Citrus Sinensis ID: 013669

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccEEccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccEEEcccccHHHHHHHHHHccccEEEEEccccccEEEEEcHHHHHHHHHHccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHccccccEEEEccccEEEEEEEHHHHHHHHcccccccccccccHHHHHHHccccccccccccccEEEcccccHHHHHHHHHHccccEEEEEEcccccEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccHccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccHcHcHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccEEccccccEEEEEcHHHHHHHHHHHHcccccHHHHHccHHHccccccccccEEEEccccHHHHHHHHHHHcccccEEEEcccccEEEEEEcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEccccHHHHHHHHHHHHccccEEEEEEcccccEEEEEEHHHHHHHHHcccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFAripvlsfpnvpggrdttipDAVKILSEcnilsapvkipdapsssdwkerylGIVDYSAIILWVLETAELAAAAFSVGTataagvgtgtVGALGALalgmtgpaaVAGLTVAAAGAAVAGGlaaekgagkdaptaadRLHEDFYKVIlqeepfkstTVRSIIKsyrwapflpvatddSMLSVLLLLSKyrlrnvpiiepgtpdiknYITQSAVVqglegckgrdwfdiiasqpisdlglpfmssdeviTIQSNELILEAFKRMkdnniggipvvegqqkkivgnvsIRDIRHLLLKPELFSNFRQLTVRDFMnavvpttpdsgkvnppitcklestlGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDViscfifeppnhldnyfgfsvKDLLNQ
Flexible Loop (DISEMBL)
maqaeeakevsklsscDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRDTTIPDAVKILSECNIlsapvkipdapsssdWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVilqeepfksttvrSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIiepgtpdiknYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIggipvvegqqkkivGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVvpttpdsgkvnpPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Low Complexity Region (SEG)
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAElaaaafsvgtataagvgtgtvgalgalalgmtgpaavagltvaaagaavagglaaekgagkdaPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDsmlsvllllsKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYvvageeaevvgvITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Disordered region (IsUnstruct)
****************DAYFEAIQ****L*HSLQETLTAAFARIPVLSFPNVPGGRDTTIPDAVKILSECNILSAPVKIPD****SDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAE*********AADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKD****
Disordered Region (DISOPRED)
************************************LTAAFARIPVLSFPNVPGGRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE*************AGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL********TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVP**P*SGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLL**
Disordered Region (DISEMBL)
**************SCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLA**********TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Disordered Region (DISPRO)
************LSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGT*******TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	438	2.2.26 [Sep-21-2011]
Q9CAR3	447	SNF1-related protein kina	yes	no	0.997	0.977	0.702	1e-160
Q8LBB2	424	SNF1-related protein kina	no	no	0.888	0.917	0.329	9e-64
Q9MYP4	514	5'-AMP-activated protein	yes	no	0.490	0.418	0.225	9e-08
Q9UGI9	489	5'-AMP-activated protein	yes	no	0.490	0.439	0.221	1e-07
Q8BGM7	489	5'-AMP-activated protein	yes	no	0.490	0.439	0.217	3e-07
Q2LL38	497	5'-AMP-activated protein	yes	no	0.497	0.438	0.223	7e-07
Q9XI37	352	SNF1-related protein kina	no	no	0.312	0.389	0.276	2e-06
Q8GXI9	357	SNF1-related protein kina	no	no	0.317	0.389	0.240	3e-05
Q5R4S0	524	5'-AMP-activated protein	no	no	0.520	0.435	0.228	0.0001
Q10343	334	5'-AMP-activated protein	yes	no	0.436	0.571	0.225	0.0002

>sp|Q9CAR3|KINGL_ARATH SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=2 SV=1

 Score =  564 bits (1454), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 312/444 (70%), Positives = 370/444 (83%), Gaps = 7/444 (1%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGR---- 56
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGR    
Sbjct: 4   SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63

Query: 57  --DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
             +T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 64  QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           A S  +ATAAGVG G VGALG  ALGMTGP A AGL  AA GAAVAGG+AAE+G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 183

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
           TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EVI+I+S 
Sbjct: 244 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESE 303

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFKRM+DNNIGG+PVVEG  KKIVGN+S+RDIR+LLL+PE+FSNFRQLTV+ F  
Sbjct: 304 ELILEAFKRMRDNNIGGLPVVEGLNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFAT 363

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
            +     + G   P ITC+ +STLGSVI+SLAS+SVHR+YV AG+E E+ GVITLRDVIS
Sbjct: 364 KIATAGEEYGLAIPAITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVIS 423

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CF+ EPPN+ +N  GFSVK++LN+
Sbjct: 424 CFVSEPPNYFENCLGFSVKEMLNR 447

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBB2|KING1_ARATH SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2

 Score =  244 bits (623), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 235/443 (53%), Gaps = 54/443 (12%)

Query: 1   MAQAEEAKEVSKLSSCDAYF----EAIQSRKKLPHSLQETLTAAFARIPVLSFP------ 50
           + ++E     S +SS +A      E +   +K   S  E L A F  IPV +FP      
Sbjct: 9   IMRSESLGHRSDVSSPEAKLGMRVEDLWDEQKPQLSPNEKLNACFESIPVSAFPLSSDSQ 68

Query: 51  NVPGGRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAE 110
           ++    DT++ +AV+ LS+  +LSAPV   DAP  + W +RY+GIV++  I++W+L   E
Sbjct: 69  DIEIRSDTSLAEAVQTLSKFKVLSAPVVDVDAPEDASWIDRYIGIVEFPGIVVWLLHQLE 128

Query: 111 LAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAG 170
                                            P +     VAA+              G
Sbjct: 129 ---------------------------------PPSPRSPAVAASNGFSHDFTTDVLDNG 155

Query: 171 KDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY 230
             A T+ +     F++V+   E +K+T VR I  ++RWAPFL +  ++S L++LLLLSKY
Sbjct: 156 DSAVTSGN-----FFEVLTSSELYKNTKVRDISGTFRWAPFLALQKENSFLTMLLLLSKY 210

Query: 231 RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT 290
           +++++P+++ G   I+N ITQS V+  L  C G  WF+    + +S++GLP MS D +I 
Sbjct: 211 KMKSIPVVDLGVAKIENIITQSGVIHMLAECAGLLWFEDWGIKTLSEVGLPIMSKDHIIK 270

Query: 291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR 350
           I  +E +L+AFK M+   IGGIPV+E   +K VGN+S+RD++ LL  PE++ ++R +T +
Sbjct: 271 IYEDEPVLQAFKLMRRKRIGGIPVIERNSEKPVGNISLRDVQFLLTAPEIYHDYRSITTK 330

Query: 351 DFMNAVVPTTPDSGKVNPP-----ITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 405
           +F+ +V       G  + P     I C    TL  +I  L ++ +HRIYVV  +   + G
Sbjct: 331 NFLVSVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIYVV-DDFGNLEG 389

Query: 406 VITLRDVISCFIFEPPNHLDNYF 428
           +ITLRD+I+  + EP  +  ++F
Sbjct: 390 LITLRDIIARLVHEPSGYFGDFF 412

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants. The SnRK complex may also be involved in the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase and in assimilation of nitrogen by phosphorylating nitrate reductase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MYP4|AAKG3_PIG 5'-AMP-activated protein kinase subunit gamma-3 OS=Sus scrofa GN=PRKAG3 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 24/239 (10%)

Query: 188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 247
           I + E  K  T R I     + P + ++ +DS+   +  L K R+  +P+++P +  + +
Sbjct: 286 IYEIEEHKIETWREIYLQGCFKPLVSISPNDSLFEAVYALIKNRIHRLPVLDPVSGAVLH 345

Query: 248 YITQSAVVQGLEGCKGRDWFDIIASQP------ISDLGLPFMSSDEVITIQSNELILEAF 301
            +T   +++ L        F  +  +P      I DLG+      ++  +     IL A 
Sbjct: 346 ILTHKRLLKFLH------IFGTLLPRPSFLYRTIQDLGIGTFR--DLAVVLETAPILTAL 397

Query: 302 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 361
               D  +  +PVV  +  ++VG  S  D+ HL  +      +  L     MN       
Sbjct: 398 DIFVDRRVSALPVV-NETGQVVGLYSRFDVIHLAAQ----QTYNHLD----MNVGEALRQ 448

Query: 362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 420
            +  +   ++C+   TLG VI  +  + VHR+ V+  E   ++GV++L D++   +  P
Sbjct: 449 RTLCLEGVLSCQPHETLGEVIDRIVREQVHRL-VLVDETQHLLGVVSLSDILQALVLSP 506

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|Q9UGI9|AAKG3_HUMAN 5'-AMP-activated protein kinase subunit gamma-3 OS=Homo sapiens GN=PRKAG3 PE=1 SV=3

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/239 (22%), Positives = 109/239 (45%), Gaps = 24/239 (10%)

Query: 188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 247
           I + E  K  T R I     + P + ++ +DS+   +  L K R+  +P+++P + ++ +
Sbjct: 261 IYEIEQHKIETWREIYLQGCFKPLVSISPNDSLFEAVYTLIKNRIHRLPVLDPVSGNVLH 320

Query: 248 YITQSAVVQGLEGCKGRDWFDIIASQP------ISDLGLPFMSSDEVITIQSNELILEAF 301
            +T   +++ L        F  +  +P      I DLG+   +  ++  +     IL A 
Sbjct: 321 ILTHKRLLKFLH------IFGSLLPRPSFLYRTIQDLGI--GTFRDLAVVLETAPILTAL 372

Query: 302 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 361
               D  +  +PVV  +  ++VG  S  D+ HL  +     N   ++V + +        
Sbjct: 373 DIFVDRRVSALPVV-NECGQVVGLYSRFDVIHLAAQQTY--NHLDMSVGEALRQ------ 423

Query: 362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 420
            +  +   ++C+   +LG VI  +A + VHR+ V+  E   ++GV++L D++   +  P
Sbjct: 424 RTLCLEGVLSCQPHESLGEVIDRIAREQVHRL-VLVDETQHLLGVVSLSDILQALVLSP 481

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q8BGM7|AAKG3_MOUSE 5'-AMP-activated protein kinase subunit gamma-3 OS=Mus musculus GN=Prkag3 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/239 (21%), Positives = 107/239 (44%), Gaps = 24/239 (10%)

Query: 188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 247
           I + E  K  T R I     + P + ++ +DS+   +  L K R+  +P+++P +  +  
Sbjct: 261 IYEIEEHKIETWREIYLQGCFKPLVSISPNDSLFEAVYALIKNRIHRLPVLDPVSGTVLY 320

Query: 248 YITQSAVVQGLEGCKGRDWFDIIASQP------ISDLGLPFMSSDEVITIQSNELILEAF 301
            +T   +++ L        F  +  +P      I DLG+   +  ++  +     +L A 
Sbjct: 321 ILTHKRLLKFLH------IFGALLPRPSFLCRTIQDLGI--GTFRDLAVVLETAPVLTAL 372

Query: 302 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 361
               D  +  +PVV  +  ++VG  S  D+ HL  +     N   ++V + +        
Sbjct: 373 DIFVDRRVSALPVV-NESGQVVGLYSRFDVIHLAAQQTY--NHLDMSVGEALRQ------ 423

Query: 362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 420
            +  +   ++C+   +LG VI  +A + VHR+ V+  E   ++GV++L D++   +  P
Sbjct: 424 RTLCLEGVLSCQPHESLGEVIDRIAREQVHRL-VLVDETQHLLGVVSLSDILQALVLSP 481

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q2LL38|AAKG3_BOVIN 5'-AMP-activated protein kinase subunit gamma-3 OS=Bos taurus GN=PRKAG3 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKN 247
           I + E  K  T R I     + P + ++  DS+   +  L K R+  +P+++P +  + +
Sbjct: 268 IYEIEEHKIETWREIYLQGCFKPLVSISPSDSLFEAVYTLIKNRIHRLPVLDPVSGAVLH 327

Query: 248 YITQSAVVQGLEGCKG----RDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKR 303
            +T   +++ L   +     R  F     + I DLG+   +  ++  +     IL A   
Sbjct: 328 ILTHKRLLKFLHIFQRTLLPRPSF---LYRTIQDLGIG--TFRDLAVVLETAPILTALDI 382

Query: 304 MKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDS 363
             D  +  +PV+  +  ++VG  S  D+ HL  +     N   ++V + +         +
Sbjct: 383 FVDRRVSALPVI-NEAGQVVGLYSRFDVIHLAAQQTY--NHLDISVGEALRR------RT 433

Query: 364 GKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP 420
             +   ++C+   TLG VI  +A + VHR+ V+  E   ++GV++L D++   +  P
Sbjct: 434 LCLEGVLSCQPHETLGEVIDRIAREQVHRL-VLVDETQHLLGVVSLSDILQALVLSP 489

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|Q9XI37|PV42A_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana GN=PV42A PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 26/163 (15%)

Query: 265 DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE-------- 316
           D    + S+ ISDLG     +D V  I     +  A   MK   +  +P+V         
Sbjct: 194 DDLKTVLSRSISDLG---AVNDSVYAITERTTVSNAINVMKGALLNAVPIVHAPDIAQED 250

Query: 317 ------GQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPI 370
                 G+ +K++G  S  D++   L PEL   +  LT  +F      T   SGK    +
Sbjct: 251 HLQLVNGRHRKVIGTFSATDLKGCRL-PEL-QTWLPLTALEF------TEKTSGKEREVV 302

Query: 371 TCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI 413
           +C +EST+   I  + ++ VHR++V+  ++  + GV++L D+I
Sbjct: 303 SCGVESTMEEAIEKVVTRGVHRVWVM-DQQGLLQGVVSLTDII 344

Plays redundant role with PV42b in regulating male gametogenesis and pollen tube guidance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXI9|PV42B_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42b OS=Arabidopsis thaliana GN=PV42B PE=2 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 23/162 (14%)

Query: 270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE------------- 316
           I S  ++DL       + V+ + S   + +A + M    +  +P+VE             
Sbjct: 188 ILSHTVTDLSAIH---NTVLALTSQARVKDAIQCMSIAMLNAVPIVEASGEGEDHKQLVD 244

Query: 317 GQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPP----ITC 372
           G+ +++VG  S  D++   L      ++  L   +F+  +  T   +   + P    +TC
Sbjct: 245 GKNRRVVGTFSASDLKGCHLAT--LRSWLPLNALEFVEKIPRTLLFTAATSTPGRELVTC 302

Query: 373 KLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
            + STL  VIH + +K VHR++VV  +   + G+++L D+I+
Sbjct: 303 HVTSTLAQVIHMVTTKRVHRVWVV-DQNGGLQGLVSLTDIIA 343

Plays redundant role with PV42a in regulating male gametogenesis and pollen tube guidance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 105/245 (42%), Gaps = 17/245 (6%)

Query: 180 LHEDFYKV----ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNV 235
           LH  +YK     I + E  K  T R +     + P + ++ D S+L  +  L K ++  +
Sbjct: 282 LHR-YYKSPMVQIYELEEHKIETWRELYLQETFKPLVNISPDASLLDAVYSLIKNKIHRL 340

Query: 236 PIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNE 295
           P+I+P + +    +T   +++ L+             Q + +LG+   +   +  I  + 
Sbjct: 341 PVIDPISGNALYILTHKRILKFLQLFMSDMPKPAFMKQNLDELGI--GTYHNIAFIHPDT 398

Query: 296 LILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNA 355
            I++A     +  I  +PVV+ +  K+V   S  D+  + L  E   N   +TV   +  
Sbjct: 399 PIIKALNIFVERRISALPVVD-ESGKVVDIYSKFDV--INLAAEKTYNNLDITVTQALQH 455

Query: 356 VVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC 415
                  S      + C     L +++  +    VHR+ VVA E   +VG+I+L D++  
Sbjct: 456 ------RSQYFEGVVKCNKLEILETIVDRIVRAEVHRL-VVANEADSIVGIISLSDILQA 508

Query: 416 FIFEP 420
            I  P
Sbjct: 509 LILTP 513

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

>sp|Q10343|AAKG_SCHPO 5'-AMP-activated protein kinase subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cbs2 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 107/222 (48%), Gaps = 31/222 (13%)

Query: 219 SMLSVLLLLSKYRLRNVPII----EPGTPDIKNYITQSAVVQGLE-GCKGRDWFDIIASQ 273
           S++   L +SK R R +P+I    E G+  I + +TQ  +++ +   CK      +    
Sbjct: 127 SLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRV---- 182

Query: 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVV--EGQQKKIVGNVSIRDI 331
           P++ + +   S+    ++++   + +  K + + NI  +P+V  EG    +  +V   D+
Sbjct: 183 PLNQMTIGTWSNLATASMETK--VYDVIKMLAEKNISAVPIVNSEGTLLNVYESV---DV 237

Query: 332 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 391
            HL+   + +SN   L+V +   A++    +   V+   TC+    L  +  ++    VH
Sbjct: 238 MHLIQDGD-YSNL-DLSVGE---ALLKRPANFDGVH---TCRATDRLDGIFDAIKHSRVH 289

Query: 392 RIYVVAGEEAEVVGVITLRDVISCFIFEP------PNHLDNY 427
           R++VV  E  ++ G+++L D+++  I++       P   DN+
Sbjct: 290 RLFVV-DENLKLEGILSLADILNYIIYDKTTTPGVPEQTDNF 330

Adenine nucleotides-binding subunit gamma of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (SNF1) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
357486631	443	SNF1-related protein kinase regulatory s	0.997	0.986	0.716	1e-176
225424926	444	PREDICTED: SNF1-related protein kinase r	1.0	0.986	0.772	1e-171
255558196	443	AMP-activated protein kinase, gamma regu	0.997	0.986	0.743	1e-165
224140801	443	predicted protein [Populus trichocarpa]	0.997	0.986	0.720	1e-165
356500477	443	PREDICTED: SNF1-related protein kinase r	0.997	0.986	0.720	1e-161
449434819	442	PREDICTED: SNF1-related protein kinase r	0.995	0.986	0.752	1e-161
356498190	443	PREDICTED: SNF1-related protein kinase r	0.997	0.986	0.734	1e-160
145327199	476	Cystathionine beta-synthase (CBS) protei	0.997	0.918	0.702	1e-158
42563087	447	Cystathionine beta-synthase (CBS) protei	0.997	0.977	0.702	1e-158
297841713	447	CBS domain-containing protein [Arabidops	0.997	0.977	0.700	1e-156

>gi|357486631|ref|XP_003613603.1| SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula] gi|355514938|gb|AES96561.1| SNF1-related protein kinase regulatory subunit gamma [Medicago truncatula]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/444 (71%), Positives = 376/444 (84%), Gaps = 7/444 (1%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGR---- 56
           MA  +E +  ++LS CD YFE IQSRKKLP +LQETLT +FA+IPV SFP VPGG+    
Sbjct: 1   MAHEQEVRTSTQLSKCDRYFETIQSRKKLPQTLQETLTDSFAKIPVSSFPGVPGGKVVEI 60

Query: 57  --DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
             DT + +AVKILSE NIL+APVK PDA   SDW++RYLGI+DYSAIILWV+E+AELAA 
Sbjct: 61  LADTPVGEAVKILSESNILAAPVKDPDAGIGSDWRDRYLGIIDYSAIILWVMESAELAAV 120

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           A S GTATAAGVG GTVGALGA+ALG TGPAA+AGLT AA GAAV GG+AA+K   KDAP
Sbjct: 121 ALSAGTATAAGVGAGTVGALGAIALGATGPAAIAGLTAAAVGAAVVGGVAADKTMAKDAP 180

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
            AA+ L EDFYKVILQEEPFKSTTVRSI+KSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAANNLGEDFYKVILQEEPFKSTTVRSILKSYRWAPFVPVAKNSAMLTVLLLLSKYRLRN 240

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP+IEPG  DI N+ITQSAV+QGLEGC+GRDWFD IA++P++DLGLPFMS+D+VI+IQSN
Sbjct: 241 VPVIEPGKADIVNFITQSAVIQGLEGCRGRDWFDCIAARPMADLGLPFMSADKVISIQSN 300

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFK M+DN IGG+PVVEG  K IVGN+SIRDIR+LLLKPE+FSNFR LTV DFM 
Sbjct: 301 ELILEAFKIMRDNQIGGLPVVEGPAKTIVGNLSIRDIRYLLLKPEIFSNFRNLTVMDFMK 360

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
            +V  + +SGKV  PITCK ++TL SVIH+LAS+S+HRIY V G++ +VVGVITLRDVIS
Sbjct: 361 KIVSASYESGKVTRPITCKPDATLQSVIHTLASQSIHRIYTVNGQD-QVVGVITLRDVIS 419

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CFI EP  H D+Y+GF+VK++LNQ
Sbjct: 420 CFITEPDYHFDDYYGFAVKEMLNQ 443

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424926|ref|XP_002277342.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Vitis vinifera] gi|296086419|emb|CBI32008.3| unnamed protein product [Vitis vinifera]

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 343/444 (77%), Positives = 384/444 (86%), Gaps = 6/444 (1%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGR---- 56
           MAQA+EAKE  +L SCDAYFE IQSRKKLP SLQE+LTAAFARIPV SFP V GG+    
Sbjct: 1   MAQAQEAKESPQLLSCDAYFENIQSRKKLPRSLQESLTAAFARIPVSSFPEVLGGKVVEI 60

Query: 57  --DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
             D  I +AVK LS CNILSAPV+ PDA +S DW+ERYLGI+DYSAIILWVLE+A+LAA 
Sbjct: 61  RGDAIIAEAVKTLSLCNILSAPVRNPDAGTSLDWRERYLGIIDYSAIILWVLESAQLAAV 120

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           AFS  TATAAGV  G VGALGALALG TGPAAVAG+TVAA GAAVAGG+AA++G GKDAP
Sbjct: 121 AFSASTATAAGVSAGAVGALGALALGATGPAAVAGITVAAVGAAVAGGMAADRGMGKDAP 180

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
           TAAD L E+FYKV+ QEEPFKSTTV+SI+KSYR APFLPVATD SMLSVLLLLSKYR+RN
Sbjct: 181 TAADHLGEEFYKVLFQEEPFKSTTVQSILKSYRSAPFLPVATDSSMLSVLLLLSKYRMRN 240

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP+IEPG P +KNYITQSA+VQGLE CKGRDWFD IA+ PISDLGLPFMS +EV+TIQSN
Sbjct: 241 VPVIEPGQPFVKNYITQSAIVQGLERCKGRDWFDCIAAHPISDLGLPFMSHNEVVTIQSN 300

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFK+MKDN IGG+PVVEG +KKIVGNVSIRDIR LLL P+LFSNFRQLTV DFM 
Sbjct: 301 ELILEAFKKMKDNKIGGLPVVEGPRKKIVGNVSIRDIRFLLLNPDLFSNFRQLTVMDFMT 360

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
            +  TT ++G V  P+TC L S LGSVIH+LA+KSVHRIYVVAG+E EVVGVITLRDVIS
Sbjct: 361 TIASTTEEAGNVIQPMTCHLNSALGSVIHTLAAKSVHRIYVVAGQEDEVVGVITLRDVIS 420

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CFIFEPPNH DNYFGF+VK++LN+
Sbjct: 421 CFIFEPPNHFDNYFGFTVKEMLNK 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558196|ref|XP_002520125.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223540617|gb|EEF42180.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 330/444 (74%), Positives = 378/444 (85%), Gaps = 7/444 (1%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGR---- 56
           MAQ +E +  S L SCDAYFE IQSRKKLP SLQ+TLT AFARIPV SFP VP G+    
Sbjct: 1   MAQTKEKRASSNLESCDAYFETIQSRKKLPLSLQDTLTTAFARIPVSSFPLVPRGKVIEI 60

Query: 57  --DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
             DT++ DAVKILSECNI +APVK  +A +SSDW+E+YLG++DYSAIILWVLE+AELAA 
Sbjct: 61  LADTSVADAVKILSECNITAAPVKNSEAGTSSDWREKYLGMIDYSAIILWVLESAELAAV 120

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           A S   ATAAGVG G VGALGA+ALG+TGPAA+AGLT AA GAAV GG+AA+KG GKDAP
Sbjct: 121 ALSASRATAAGVGAGAVGALGAVALGITGPAAIAGLTAAAVGAAVVGGVAADKGMGKDAP 180

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
           TAA  L +DFYKVILQEEPFKSTTVRS++KSYRWAPFL VATD SMLSVLLLLSKYRLRN
Sbjct: 181 TAASNLGKDFYKVILQEEPFKSTTVRSVLKSYRWAPFLAVATDSSMLSVLLLLSKYRLRN 240

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP++EPG  D++N+ITQSA+VQGLEGCKGRDWFD IA++PISD GLPFMS++EVI+I+SN
Sbjct: 241 VPVVEPGKTDVQNFITQSAIVQGLEGCKGRDWFDCIAARPISDFGLPFMSANEVISIRSN 300

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFKRM+DN+IGG+PVVEG  K+IV N+SIRDIRHLLLKPELF+NFRQLTV DFM 
Sbjct: 301 ELILEAFKRMRDNHIGGLPVVEGANKRIVWNLSIRDIRHLLLKPELFNNFRQLTVTDFM- 359

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
                T + G+  PPITCK ++TLGSVIHSLA  SVHRIYVVAG E EVVGVITLRDVIS
Sbjct: 360 VTFSKTHEIGRGIPPITCKPDATLGSVIHSLAWNSVHRIYVVAGNENEVVGVITLRDVIS 419

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CFI+EP +H DNYFGFS K++LN 
Sbjct: 420 CFIYEPADHSDNYFGFSTKEMLNN 443

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140801|ref|XP_002323767.1| predicted protein [Populus trichocarpa] gi|222866769|gb|EEF03900.1| predicted protein [Populus trichocarpa]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 320/444 (72%), Positives = 381/444 (85%), Gaps = 7/444 (1%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGR---- 56
           MA  ++  + S+LS CD+YFE IQSRKKLP SLQETLTAAFA IP  SFP VPGG+    
Sbjct: 1   MAGKQQVTKSSELSICDSYFENIQSRKKLPFSLQETLTAAFAEIPASSFPPVPGGKVIEI 60

Query: 57  --DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
             D+++ DAV+ILSECNI++APVK  DA  S DW++RYLGI+DYSAI+LWVLE+AELAA 
Sbjct: 61  LADSSVADAVRILSECNIMAAPVKKVDAGDSLDWRDRYLGIIDYSAIVLWVLESAELAAV 120

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           A +  +A AAG+GTG VGALGA+ALG+TGP AVAGLT AA GAAV GG+AAEKGAGKDA 
Sbjct: 121 ALAATSAAAAGIGTGAVGALGAVALGLTGPVAVAGLTFAAVGAAVVGGVAAEKGAGKDAS 180

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
           TAAD L +DFYKV+LQEEPFKSTTV SII SYRW+PFLPV T+ SMLS+LLLLSKYRLRN
Sbjct: 181 TAADNLGQDFYKVLLQEEPFKSTTVGSIITSYRWSPFLPVTTNSSMLSILLLLSKYRLRN 240

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP+IEPG PDI+N+ITQSA+VQGLEGCKGRDWFD IA+QPIS++GLPF+S++EV+++QS 
Sbjct: 241 VPVIEPGKPDIQNFITQSAIVQGLEGCKGRDWFDCIAAQPISNVGLPFVSANEVVSVQSG 300

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFK+MKDN IGG+PVVEG  KKI+GN+SIRDIRHLLLKPELFSNFRQ TV DFMN
Sbjct: 301 ELILEAFKKMKDNKIGGLPVVEGPNKKIIGNLSIRDIRHLLLKPELFSNFRQHTVMDFMN 360

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
           A+V TT  +G V PPITCK ++TLGS+IH+L+S+S HRI+VV   E EVVGVITLRDVIS
Sbjct: 361 AIVSTTKGTGSVIPPITCKPDATLGSLIHALSSRSGHRIHVVNQSE-EVVGVITLRDVIS 419

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CF++EPPNH D+YF FS K++L++
Sbjct: 420 CFVYEPPNHFDSYFSFSTKEMLDE 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500477|ref|XP_003519058.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max]

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 320/444 (72%), Positives = 377/444 (84%), Gaps = 7/444 (1%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGR---- 56
           MAQ +E +  + L  CD YFE IQSRKKLP SLQETLT AFA+IPV SFP VP G+    
Sbjct: 1   MAQEQEYRTSTTLPKCDTYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEI 60

Query: 57  --DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
             DT I +AVKILSE NILSAPVK P+A +SSDW+ RYLGI+DYSAIILWVLE AELA  
Sbjct: 61  LADTPIGEAVKILSESNILSAPVKDPEAANSSDWRRRYLGIIDYSAIILWVLEGAELAHK 120

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           A  VGTATAAGVG G  GA+GALALG+TGPAA+AGLT AAAGAA+AGG+AA++   KDAP
Sbjct: 121 ALLVGTATAAGVGAGAAGAMGALALGVTGPAAIAGLTAAAAGAALAGGIAADRVVAKDAP 180

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
            AAD L EDFYK+IL+EEPFKSTTVRSIIKSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRN 240

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP+IE G PDI N+ITQSAVVQGLEGCKGRDWFD IA + I+DLGLPFMS+DEVI+IQSN
Sbjct: 241 VPVIETGKPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKRIADLGLPFMSTDEVISIQSN 300

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFK+M+DN IGG+P+VEG +K+IVGN+SIRDIRHLLL+PELF+NFR+LTV +FMN
Sbjct: 301 ELILEAFKQMRDNKIGGLPIVEGPKKRIVGNLSIRDIRHLLLRPELFTNFRKLTVMNFMN 360

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
            +V ++  +GKV   ITCK +STL  VIH+LAS+S+HRIYVV G++ EVVGVITLRDVIS
Sbjct: 361 KIVSSSLQTGKVTQSITCKPDSTLQGVIHTLASQSIHRIYVVDGQD-EVVGVITLRDVIS 419

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CF+ EPP + D+Y+GF+VK++LNQ
Sbjct: 420 CFVTEPPYNFDDYYGFAVKEMLNQ 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434819|ref|XP_004135193.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis sativus] gi|449478452|ref|XP_004155322.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Cucumis sativus]

 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 334/444 (75%), Positives = 381/444 (85%), Gaps = 8/444 (1%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGR---- 56
           M Q +E K  S LS+C++YFE IQS KKLP  LQETL  AF+RIPV SFP VPGGR    
Sbjct: 1   MEQGKEVK-YSALSNCESYFERIQSTKKLPKYLQETLNDAFSRIPVSSFPGVPGGRVIEI 59

Query: 57  --DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
             DTTI +AVKILSECNILSAPV  P+A ++ +W+ERY+GIVDYSAIILWVLE+AELAAA
Sbjct: 60  PADTTIANAVKILSECNILSAPVVNPNAKANMNWRERYIGIVDYSAIILWVLESAELAAA 119

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           A S G+ATA GVG G VGALGALALG TGP AVAG+  AA GAAVAGG+A +KG GKDAP
Sbjct: 120 ALSAGSATAVGVGAGAVGALGALALGATGPIAVAGIAAAAVGAAVAGGVAVDKGIGKDAP 179

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
           TAAD L EDFYKV+LQEEPFKSTTV  I+KSYRWAPFLPV  D+SML VLLLLSKYRLRN
Sbjct: 180 TAADNLGEDFYKVLLQEEPFKSTTVEMILKSYRWAPFLPVTLDNSMLCVLLLLSKYRLRN 239

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP+IE G P+IKNYITQSAVVQGLE CKGRDWFD IA++PISDLGLPF+S  EVI+IQSN
Sbjct: 240 VPVIESGKPEIKNYITQSAVVQGLERCKGRDWFDCIAARPISDLGLPFVSCKEVISIQSN 299

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFK+M++N+IGG+PVVEG +K+IVGN+SIRDIR+LLLKPELFSNFR+LTV DF+ 
Sbjct: 300 ELILEAFKQMRENHIGGLPVVEGPKKRIVGNISIRDIRYLLLKPELFSNFRKLTVMDFIK 359

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
            VV  T D GK+ PPITC+L+STLG VIHSLASKSVHRIYVVAG+E EVVGVITLRDVIS
Sbjct: 360 TVVTLTQDVGKLAPPITCRLDSTLGFVIHSLASKSVHRIYVVAGDE-EVVGVITLRDVIS 418

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CFIFEPPN++ N+FGFS +++LNQ
Sbjct: 419 CFIFEPPNYIINHFGFSAEEMLNQ 442

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498190|ref|XP_003517936.1| PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Glycine max]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 326/444 (73%), Positives = 378/444 (85%), Gaps = 7/444 (1%)

Query: 1   MAQAEEAKEVSKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGR---- 56
           MAQ +E +  + L  CDAYFE IQSRKKLP SLQETLT AFA+IPV SFP VP G+    
Sbjct: 1   MAQEQEFRTSTPLPKCDAYFETIQSRKKLPLSLQETLTDAFAKIPVSSFPAVPSGKVIEI 60

Query: 57  --DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
             DT + +AVKILSE NIL+APVK PDA +SSDW+ RYLGI+DYSAIILWVLE AELA A
Sbjct: 61  LADTPVGEAVKILSESNILAAPVKDPDASNSSDWRSRYLGIIDYSAIILWVLEGAELAQA 120

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           A   GTATAAGVG G  GALGALALG+TGPAA+AGLT AAAGAA+AGG+AA+K   KDAP
Sbjct: 121 ALLAGTATAAGVGAGAAGALGALALGLTGPAAIAGLTTAAAGAALAGGVAADKVMAKDAP 180

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
            AAD L EDFYK+IL+EEPFKSTTVRSIIKSYRWAPF+PVA + +ML+VLLLLSKYRLRN
Sbjct: 181 QAADNLGEDFYKIILEEEPFKSTTVRSIIKSYRWAPFVPVARNSAMLTVLLLLSKYRLRN 240

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP+IEPG PDI N+ITQSAVVQGLEGCKGRDWFD IA + ISDLGLPFMS+DEVI+IQSN
Sbjct: 241 VPVIEPGRPDIVNFITQSAVVQGLEGCKGRDWFDCIAEKCISDLGLPFMSTDEVISIQSN 300

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFK+MKDN IGG+PV+EG +K+IVGN+SIRDIRHLLL+PELF+NFR+LTV DFM 
Sbjct: 301 ELILEAFKQMKDNRIGGLPVIEGPKKRIVGNLSIRDIRHLLLRPELFTNFRKLTVMDFMK 360

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
            +V ++  +GKV  PITCK +STL  VIH+LAS+S+HRIYVV G + EVVGVITLRDVIS
Sbjct: 361 KIVSSSLQTGKVTQPITCKPDSTLQGVIHTLASQSIHRIYVVDGHD-EVVGVITLRDVIS 419

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CF+ EPP + D+Y+GF+VK++LNQ
Sbjct: 420 CFVTEPPYNFDDYYGFAVKEMLNQ 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145327199|ref|NP_001077801.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] gi|332196856|gb|AEE34977.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 312/444 (70%), Positives = 370/444 (83%), Gaps = 7/444 (1%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGR---- 56
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGR    
Sbjct: 33  SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 92

Query: 57  --DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
             +T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 93  QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 152

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           A S  +ATAAGVG G VGALG  ALGMTGP A AGL  AA GAAVAGG+AAE+G GKDAP
Sbjct: 153 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 212

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
           TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 213 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 272

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EVI+I+S 
Sbjct: 273 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESE 332

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFKRM+DNNIGG+PVVEG  KKIVGN+S+RDIR+LLL+PE+FSNFRQLTV+ F  
Sbjct: 333 ELILEAFKRMRDNNIGGLPVVEGLNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFAT 392

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
            +     + G   P ITC+ +STLGSVI+SLAS+SVHR+YV AG+E E+ GVITLRDVIS
Sbjct: 393 KIATAGEEYGLAIPAITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVIS 452

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CF+ EPPN+ +N  GFSVK++LN+
Sbjct: 453 CFVSEPPNYFENCLGFSVKEMLNR 476

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563087|ref|NP_564975.2| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana] gi|75262290|sp|Q9CAR3.1|KINGL_ARATH RecName: Full=SNF1-related protein kinase regulatory subunit gamma-1-like; AltName: Full=AKIN subunit gamma-1-like; AltName: Full=CBS domain-containing protein CBSCBS2 gi|12325233|gb|AAG52563.1|AC010675_11 hypothetical protein; 77242-78931 [Arabidopsis thaliana] gi|190684768|gb|ACE82595.1| At1g69800 [Arabidopsis thaliana] gi|222424344|dbj|BAH20128.1| AT1G69800 [Arabidopsis thaliana] gi|332196855|gb|AEE34976.1| Cystathionine beta-synthase (CBS) protein [Arabidopsis thaliana]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 312/444 (70%), Positives = 370/444 (83%), Gaps = 7/444 (1%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGR---- 56
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGR    
Sbjct: 4   SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63

Query: 57  --DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
             +T + +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 64  QAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           A S  +ATAAGVG G VGALG  ALGMTGP A AGL  AA GAAVAGG+AAE+G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGMTGPVAAAGLAAAAVGAAVAGGVAAERGIGKDAP 183

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
           TAAD+L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP+I+ G PDIKNY+TQSAVV GLEGCKGRDWFD I++ PISDLGLPFMS +EVI+I+S 
Sbjct: 244 VPVIKTGEPDIKNYVTQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESE 303

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFKRM+DNNIGG+PVVEG  KKIVGN+S+RDIR+LLL+PE+FSNFRQLTV+ F  
Sbjct: 304 ELILEAFKRMRDNNIGGLPVVEGLNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFAT 363

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
            +     + G   P ITC+ +STLGSVI+SLAS+SVHR+YV AG+E E+ GVITLRDVIS
Sbjct: 364 KIATAGEEYGLAIPAITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVIS 423

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CF+ EPPN+ +N  GFSVK++LN+
Sbjct: 424 CFVSEPPNYFENCLGFSVKEMLNR 447

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841713|ref|XP_002888738.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297334579|gb|EFH64997.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 311/444 (70%), Positives = 368/444 (82%), Gaps = 7/444 (1%)

Query: 2   AQAEEAKEV-SKLSSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRDTTI 60
           ++A E KE+ S +SSC+AYFE +QSRK LP SLQETL +AFA IPV SFP VPGGR   I
Sbjct: 4   SEAVEDKEIKSAVSSCEAYFEKVQSRKNLPKSLQETLNSAFAGIPVSSFPQVPGGRVIEI 63

Query: 61  P------DAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAA 114
           P      +AVKILS+  ILSAPV   D  SS DW+ERYLGI+DYS+IILWVLE+AELAA 
Sbjct: 64  PAETPVSEAVKILSDSKILSAPVINTDHESSLDWRERYLGIIDYSSIILWVLESAELAAI 123

Query: 115 AFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP 174
           A S  +ATAAGVG G VGALG  ALG+TGP AVAGL  AA GAAVAGG+AA++G GKDAP
Sbjct: 124 ALSATSATAAGVGAGAVGALGVAALGVTGPVAVAGLAAAAVGAAVAGGVAADRGIGKDAP 183

Query: 175 TAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN 234
           TAAD L +DFY+VILQEEPFKSTTVR+I+KS+RWAPFLPV+T+ SMLSV+LLLSKYRLRN
Sbjct: 184 TAADNLGKDFYQVILQEEPFKSTTVRTILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN 243

Query: 235 VPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           VP+I+ G PDIKNYITQSAVV GLEGCKGRDWFD I++  ISDLGLPFMS +EVI+I+S 
Sbjct: 244 VPVIKSGEPDIKNYITQSAVVHGLEGCKGRDWFDHISALSISDLGLPFMSPNEVISIESE 303

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
           ELILEAFKRM+DNNIGG+PV+EG  KKIVGN+S+RDIR+LLL+PE+FSNFRQLTV+ F  
Sbjct: 304 ELILEAFKRMRDNNIGGLPVIEGPNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFAT 363

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
            +     + G   P ITC+ +STLGSVI+SLAS+SVHR+YV AG+E E+ GVITLRDVIS
Sbjct: 364 KIATAGEEYGLAIPAITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVITLRDVIS 423

Query: 415 CFIFEPPNHLDNYFGFSVKDLLNQ 438
           CF+ EPPN+ +N  GFSVK++LN+
Sbjct: 424 CFVSEPPNYFENCLGFSVKEMLNR 447

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
TAIR|locus:2114475	424	KING1 "AT3G48530" [Arabidopsis	0.559	0.577	0.350	1.4e-56
DICTYBASE|DDB_G0288201	313	DDB_G0288201 [Dictyostelium di	0.442	0.619	0.229	2.3e-09
DICTYBASE|DDB_G0278953	359	DDB_G0278953 "CBS (cystathioni	0.463	0.565	0.223	1.9e-07
DICTYBASE|DDB_G0275177	304	sigI "CBS (cystathionine-beta-	0.351	0.506	0.266	8.9e-07
UNIPROTKB|Q48IU0	146	PSPPH_2494 "CBS domain protein	0.132	0.397	0.409	0.00085

TAIR|locus:2114475 KING1 "AT3G48530" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
 Identities = 88/251 (35%), Positives = 145/251 (57%)

Query:   183 DFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDXXXXXXXXXXKYRLRNVPIIEPGT 242
             +F++V+   E +K+T VR I  ++RWAPFL +  ++          KY+++++P+++ G 
Sbjct:   163 NFFEVLTSSELYKNTKVRDISGTFRWAPFLALQKENSFLTMLLLLSKYKMKSIPVVDLGV 222

Query:   243 PDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFK 302
               I+N ITQS V+  L  C G  WF+    + +S++GLP MS D +I I  +E +L+AFK
Sbjct:   223 AKIENIITQSGVIHMLAECAGLLWFEDWGIKTLSEVGLPIMSKDHIIKIYEDEPVLQAFK 282

Query:   303 RMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPD 362
              M+   IGGIPV+E   +K VGN+S+RD++ LL  PE++ ++R +T ++F+ +V      
Sbjct:   283 LMRRKRIGGIPVIERNSEKPVGNISLRDVQFLLTAPEIYHDYRSITTKNFLVSVREHLEK 342

Query:   363 SGKVNPPI-----TCKLESTLGSVIHSLASKSVHRIYXXXXXXXXXXXXITLRDVISCFI 417
              G  + PI      C    TL  +I  L ++ +HRIY            ITLRD+I+  +
Sbjct:   343 CGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIYVVDDFGNLEGL-ITLRDIIARLV 401

Query:   418 FEPPNHLDNYF 428
              EP  +  ++F
Sbjct:   402 HEPSGYFGDFF 412

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

DICTYBASE|DDB_G0288201 DDB_G0288201 [Dictyostelium discoideum (taxid:44689)]

 Score = 153 (58.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
 Identities = 48/209 (22%), Positives = 97/209 (46%)

Query:   189 LQEEP-FKSTTVRSIIKSYRWAPFLPVATDDXXXXXXXXXXKYRLRNVPIIEPGTPDIKN 247
             LQ+   FK + V  I  S +  PF+ V ++           K  +R V ++     ++ N
Sbjct:    90 LQDRKLFKKSIVADICDSSKRDPFIVVDSETMLDNVAGLMVKNNIRRVAVLNQ-KGELCN 148

Query:   248 YITQSAVVQGLEGCKGRDW-FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 306
              IT S +++ +      D   + +    I ++ +    + +V++I S++   +AFK +  
Sbjct:   149 IITNSRIIECISHLFAMDKELEKLGKMTIKEMKI---GTSDVVSISSDKKAWDAFKLISK 205

Query:   307 NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-FSNFRQLTVRDFMNAVVPTTPDSGK 365
               + G+ V + Q K ++G +   D++  L+KP+  +     L V +++ A+   T     
Sbjct:   206 MGVSGVGVTDSQGK-LIGAIGDSDLK--LIKPKFQYLQLLHLPVSEYLQALKKVTD---- 258

Query:   366 VNPPITCKLESTLGSVIHSLASKSVHRIY 394
              N  I CK   T  SV+ +++ K  HR++
Sbjct:   259 -NNYIFCKPSDTFKSVVENVSEKKAHRVF 286

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0278953 DDB_G0278953 "CBS (cystathionine-beta-synthase) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 146 (56.5 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 50/224 (22%), Positives = 109/224 (48%)

Query:   180 LHEDFYKVILQEEPFKSTTVRSIIKSYRWAP--FLPVATDDXXXXXXXXXXKY-RLRNVP 236
             + +DF+K+  +EE FK+ TV  +++        F P+  +           +   +  +P
Sbjct:   123 IEQDFWKLSEEEEKFKTLTVNDVMRYPHTKDNRFSPITQNYSLFSAFEIFARDPNVHRIP 182

Query:   237 IIEP-GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE---VITIQ 292
             I++      + + +TQS +V+ +      D   ++ S+   DL +  MS  +   V+T++
Sbjct:   183 ILDNMANRHLVSILTQSQLVKYVY-----DNMSLLGSK--KDLIVKNMSGIQMGSVVTVK 235

Query:   293 SNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDF 352
             S+ L +EAFK +++ +I G+ V+   + +++  +S+RD++ +      F    +  V +F
Sbjct:   236 SSILAIEAFKILEEKDINGVAVLN-DKGELIDTLSVRDLKAIATDGSFFWKLYK-PVEEF 293

Query:   353 MNAVVPTTPDSGKVNP--PITCKLESTLGSVIHSLASKSVHRIY 394
             +  +     D   V P  P+ C    T  +V+  + + S+HR++
Sbjct:   294 LGFI---KNDQITVRPRNPVFCMDGDTFEAVLTKIYTNSIHRLF 334

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0275177 sigI "CBS (cystathionine-beta-synthase) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
 Identities = 45/169 (26%), Positives = 87/169 (51%)

Query:   229 KYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEG-CKGRDWFDIIASQPISDLGLPFMSSD 286
             K+ +  +PII+  GT  + + +TQS VV+ ++   +  +  D    Q + + G     + 
Sbjct:   126 KWGVHRLPIIDSEGT--LISILTQSRVVEYIQNHIQNINGLDKAIGQ-LKEFG-----TS 177

Query:   287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
              VI+I+ + ++++AF+ M +N I  +PVV  Q   ++GN+S+ D++ +     LFS    
Sbjct:   178 SVISIKQDRMVIDAFRLMHENGISAVPVVN-QIGILIGNISVSDMKMVGYDGTLFSRMF- 235

Query:   347 LTVRDFMNAVVPTTPDSGKVNPPITCKLEST-LGSVIHSLASKSVHRIY 394
             L +  F+  + P   +   +   + C L+ST +  +I       VHR+Y
Sbjct:   236 LPIESFLE-MKPKNQNID-IFGKVLCVLDSTTIEEIITKFYISKVHRLY 282

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q48IU0 PSPPH_2494 "CBS domain protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 101 (40.6 bits), Expect = 0.00085, P = 0.00085
 Identities = 25/61 (40%), Positives = 39/61 (63%)

Query:   278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLL 336
             L L  + + +V TI  ++++L+A + M + NIG +PVVEG    +VG VS RD  R ++L
Sbjct:     8 LKLKDLQNQQVHTIGPDQMVLDALRLMAEKNIGALPVVEGNV--VVGVVSERDYARKVIL 65

Query:   337 K 337
             K
Sbjct:    66 K 66


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      438       353   0.00079  117 3  11 22  0.40    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  229 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.59u 0.12s 25.71t   Elapsed:  00:00:01
  Total cpu time:  25.59u 0.12s 25.71t   Elapsed:  00:00:01
  Start:  Sat May 11 11:39:10 2013   End:  Sat May 11 11:39:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAR3	KINGL_ARATH	No assigned EC number	0.7027	0.9977	0.9776	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	438
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	7e-43
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-16
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	5e-14
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	6e-12
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	1e-11
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	2e-11
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	5e-11
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	9e-10
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	3e-09
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	4e-09
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	6e-09
COG3620	187	COG3620, COG3620, Predicted transcriptional regula	7e-09
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-08
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	2e-08
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	5e-08
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	9e-08
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-07
pfam00571	57	pfam00571, CBS, CBS domain	1e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	3e-07
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	6e-07
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	6e-07
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	9e-07
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	1e-06
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	2e-06
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	2e-06
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	9e-06
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	1e-05
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	1e-05
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	1e-05
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	2e-05
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-05
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	2e-05
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	2e-05
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	2e-05
pfam00571	57	pfam00571, CBS, CBS domain	3e-05
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	4e-05
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	6e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	7e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	1e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	1e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	2e-04
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	2e-04
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	2e-04
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	2e-04
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	3e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	3e-04
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	3e-04
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	5e-04
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	5e-04
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	8e-04
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	9e-04
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	0.001
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.001
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	0.001
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	0.001
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	0.001
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	0.001
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	0.002
PRK13875	440	PRK13875, PRK13875, conjugal transfer protein TrbL	0.002
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	0.002
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	0.002
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	0.002
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	0.002
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	0.003
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	0.003
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	0.004
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	0.004

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  146 bits (371), Expect = 7e-43
 Identities = 55/130 (42%), Positives = 81/130 (62%), Gaps = 4/130 (3%)

Query: 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 345
            +V++I S+E +L+AFK M+ NNI G+PVV+ +  K++GN+S  D++ LLL P+    +R
Sbjct: 1   SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYR 59

Query: 346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 405
            +T ++       T  D  K  P ITC   STL  VI  L +  VHR++VV  EE + +G
Sbjct: 60  TITFKELSEKF--TDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVV-DEEGKPIG 116

Query: 406 VITLRDVISC 415
           VITL D+IS 
Sbjct: 117 VITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 74.8 bits (184), Expect = 2e-16
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 17/129 (13%)

Query: 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 345
            +V+T+  ++ + EA + M ++ I G+PVV+    ++VG V+ RD+   L +  L     
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG-RLVGIVTERDLLRALAEGGL---DP 56

Query: 346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 405
            +TV D M                +T   +++L      +    + R+ VV  E   +VG
Sbjct: 57  LVTVGDVMTR------------DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVG 103

Query: 406 VITLRDVIS 414
           ++T  D++ 
Sbjct: 104 IVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-FD 268
           PF+PV +  S+   + +L    +  V + E  + ++   ++Q  +V+ L          D
Sbjct: 2   PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLD 61

Query: 269 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSI 328
            +   P+ DL +    + +VI+I  ++ +++A   M +  I  + VV   Q  ++GN+S+
Sbjct: 62  PLYPIPLRDLTIG---TSDVISINGDQPLIDALHLMHNEGISSVAVV-DNQGNLIGNISV 117

Query: 329 RDIRHL 334
            D+R L
Sbjct: 118 TDVRLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 62.1 bits (151), Expect = 6e-12
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 19/129 (14%)

Query: 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 345
            +VIT++ +  + +A   M +N +  +PVV+    K+VG ++ RDI   L         R
Sbjct: 7   KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGK----R 60

Query: 346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLAS-KSVHRIYVVAGEEAEVV 404
            L V++ M              P +T   ++ L   +  +     + R+ VV  +  ++V
Sbjct: 61  LLPVKEVMT------------KPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLV 108

Query: 405 GVITLRDVI 413
           G+ITL D++
Sbjct: 109 GIITLSDIL 117

Length = 117

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 19/128 (14%)

Query: 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPELFSNF 344
            +VIT++ +  + EA K M + NIG + VV+    ++VG  S RDI R + L+    ++ 
Sbjct: 1   RDVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRG---ASA 56

Query: 345 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 404
               V + M                IT   + T+   +  +  +    + VV  +  ++V
Sbjct: 57  LDTPVSEIMTR------------NVITVTPDDTVDEAMALMTERRFRHLPVV--DGGKLV 102

Query: 405 GVITLRDV 412
           G++++ DV
Sbjct: 103 GIVSIGDV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 26/128 (20%), Positives = 57/128 (44%), Gaps = 20/128 (15%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
           +V+++  ++ + +A +RM++  +  +PVV+    ++VG++   D+   L++ +       
Sbjct: 2   DVVSVAPDDTVSQAIERMREYGVSQLPVVDDG--RVVGSIDESDLLDALIEGK---AKFS 56

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
           L VR+ M   +PT      +           L  ++            VV  E  + VG+
Sbjct: 57  LPVREVMGEPLPTVDPDAPI---------EELSELLDRGNVA------VVVDEGGKFVGI 101

Query: 407 ITLRDVIS 414
           IT  D++ 
Sbjct: 102 ITRADLLK 109

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 59.4 bits (145), Expect = 5e-11
 Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 21/128 (16%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI--RHLLLKPELFSNF 344
           +V+T+  ++ I EA + M+++++G +PV E  +  +VG V+ RDI  R +        + 
Sbjct: 2   DVVTVSPDDTIREAARLMREHDVGALPVCENDR--LVGIVTDRDIVVRAVAEG----RDP 55

Query: 345 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 404
              TV D M                +T   +  +      +    V R+ VV  ++  +V
Sbjct: 56  DTTTVGDVMTR------------GVVTVTEDDDVDEAARLMREHQVRRLPVV-DDDGRLV 102

Query: 405 GVITLRDV 412
           G+++L D+
Sbjct: 103 GIVSLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 55.6 bits (135), Expect = 9e-10
 Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 19/128 (14%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
           +++T   +  + EA  RM++  I  I VV+    + +G V+ RDI  LL          Q
Sbjct: 2   QILTCPPDTSLAEAASRMRERRISSIVVVDDG--RPLGIVTERDILRLLASGPDL----Q 55

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
             V + M++            P +T   +++L      +    +  + VV  ++ E++G+
Sbjct: 56  TPVGEVMSS------------PLLTVPADTSLYDARQLMREHGIRHL-VVVDDDGELLGL 102

Query: 407 ITLRDVIS 414
           ++  D++ 
Sbjct: 103 LSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 22/133 (16%)

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR-------HLLLKPEL 340
            IT+  +  ++EA K MK+N+I  +PVV+    K+VG V+ RD++         L   EL
Sbjct: 3   PITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWEL 60

Query: 341 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 400
           +    ++ V D M               PIT   ++++      +  + +  + VV  + 
Sbjct: 61  YYLLSKIKVSDIMTR------------DPITVSPDASVEEAAELMLERKISGLPVVDDQG 108

Query: 401 AEVVGVITLRDVI 413
             +VG+IT  D+ 
Sbjct: 109 -RLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 23/134 (17%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-------RHLLLKPE 339
            VIT+  ++ +  A + M D++I  +PV+EG   K+VG V+ +DI       R L+    
Sbjct: 2   PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRH 59

Query: 340 LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGE 399
                R L V D M              P IT + ++++  V   +   ++  + VV  +
Sbjct: 60  QERRIRNLPVSDIMTR------------PVITIEPDTSVSDVASLMLENNIGGLPVV--D 105

Query: 400 EAEVVGVITLRDVI 413
           + ++VG++T  D++
Sbjct: 106 DGKLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 53.2 bits (129), Expect = 6e-09
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 21/125 (16%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
           + IT+  +  + EA + M +  I G+PVV+    K+VG V+ RD+R        F     
Sbjct: 3   DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLR--------FETDLD 53

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
             V + M      TP+       +T    ++L   +  L    + ++ VV  +E ++ G+
Sbjct: 54  KPVSEVM------TPE-----NLLTTVEGTSLEEALELLHEHKIEKLPVV-DDEGKLKGL 101

Query: 407 ITLRD 411
           IT++D
Sbjct: 102 ITVKD 106

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|226147 COG3620, COG3620, Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

 Score = 55.1 bits (133), Expect = 7e-09
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 33/175 (18%)

Query: 238 IEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELI 297
           +E G  D +   T   +++ LE  +       I ++ I       M S  V+++  ++ I
Sbjct: 38  LEAGKVDPR-LSTVKRILEALEEAEK----TRITAKTI-------MHSP-VVSVSPDDSI 84

Query: 298 LEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVV 357
            +    M+D  I  +PV+E    K+VG+++  DI   LL  E   + R L VR+ M    
Sbjct: 85  SDVVNLMRDKGISQLPVIEED--KVVGSITENDIVRALL--EGMESIRSLRVREVMGEPF 140

Query: 358 PTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDV 412
           PT      V+P  +        +VI  L         V+  E  +VVG+IT  D+
Sbjct: 141 PT------VSPDESL-------NVISQLLE---EHPAVLVVENGKVVGIITKADI 179

Length = 187

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 19/115 (16%)

Query: 226 LLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-FDIIAS--------QPIS 276
           ++ +   R +P+++ GT  +   IT + +++ L    G    F+ I +        +P+ 
Sbjct: 18  IMVRNGFRRLPVVDEGTGKLVGIITATDILKYL----GGGEKFNKIKTGNGLEAINEPVR 73

Query: 277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
            +    M+ + VITI  ++ I +A + M +  +GG+PVV+    K+VG V+ RD+
Sbjct: 74  SI----MTRN-VITITPDDSIKDAAELMLEKRVGGLPVVDDDG-KLVGIVTERDL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 21/133 (15%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR------HLLLKPEL 340
           +V+TI     I EA + M+++ I  +PVV+ +  ++VG V+ RD+R         L    
Sbjct: 2   DVVTITPTTTIAEALELMREHKIRHLPVVDEEG-RLVGIVTDRDLRDASPSPFTTLSEHE 60

Query: 341 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 400
                ++ V++ M                IT     T+      +    +  + VV  E+
Sbjct: 61  LYLLLKMPVKEIM------------TKDVITVHPLDTVEEAALLMREHRIGCLPVV--ED 106

Query: 401 AEVVGVITLRDVI 413
             +VG+IT  D++
Sbjct: 107 GRLVGIITETDLL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 13/122 (10%)

Query: 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 269
             + V+ DD++   L L+ ++ +  +P+++     +   +T+  +++ L           
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVD-DDGRLVGIVTERDLLRALAEGGLDP---- 56

Query: 270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329
                + D     M+ D V+T+  +  + EA + M ++ I  +PVV+ +  ++VG V+  
Sbjct: 57  --LVTVGD----VMTRD-VVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVGIVTRS 108

Query: 330 DI 331
           DI
Sbjct: 109 DI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 49.8 bits (120), Expect = 9e-08
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 18/126 (14%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 348
           + +  +  IL+A +++ D N   I +V  +  +++G V+  DIR  LLK           
Sbjct: 5   LLVSPDASILDALRKI-DKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL----DDP 59

Query: 349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 408
           V + MN              PIT K+ S+   ++  +  +S+  + ++  EE  VVG+ T
Sbjct: 60  VSEVMNRN------------PITAKVGSSREEILALMRERSIRHLPIL-DEEGRVVGLAT 106

Query: 409 LRDVIS 414
           L D++S
Sbjct: 107 LDDLLS 112

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 21/134 (15%)

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 347
           V+T+     I+EA K M  N    +PVV+    K+VG ++  DI   L   E F+  +  
Sbjct: 3   VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTG 62

Query: 348 TVRDFMNAVVP--------TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGE 399
              + +N  V         T      +       LE  +G +             VV  +
Sbjct: 63  NGLEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLP------------VVDDD 110

Query: 400 EAEVVGVITLRDVI 413
             ++VG++T RD++
Sbjct: 111 G-KLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 337
            M+ D V+T+  +  + EA + M++N I  +PVV  +  K+VG V++RD+   LL+
Sbjct: 4   IMTPD-VVTVPPDTSLEEALELMRENGISRLPVV-DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336
           +V+T+  +  + EA + +++N I  +PVV+ +  ++VG V+ RDI   L 
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEG-RLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 21/144 (14%)

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE------LF 341
            IT  +++ I +A + +++N I G PV++G   K+VG VS  DI  LL+  +      L 
Sbjct: 3   PITCNADDTISDAARLLRENKISGAPVLDGG--KLVGIVSESDILKLLVTHDPSGNLWLP 60

Query: 342 SNFR--QLTVRDFMN--AVVPTTPDSGKV-------NPPITCKLESTLGSVIHSLASKSV 390
           S     +L +R+F+N         D+GK+          IT   ++++      +    +
Sbjct: 61  SPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKI 120

Query: 391 HRIYVVAGEEAEVVGVITLRDVIS 414
            R+ VV  E+  +VG++T  D+I 
Sbjct: 121 KRLPVV--EDGRLVGIVTRGDIIE 142

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 20/127 (15%)

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 347
           V+T+  +  I EA K M + N+G + VV+   ++ +G V+ RDI                
Sbjct: 3   VVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDI---------------- 45

Query: 348 TVRDFMNAVVPTTP-DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
            VR     +   TP         +T   +  +      +   ++    VV  +  E+VGV
Sbjct: 46  -VRAVAAGIDLDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVV-DKGGELVGV 103

Query: 407 ITLRDVI 413
           I++RD++
Sbjct: 104 ISIRDLV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 17/120 (14%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPD-IKNYITQSAVVQGLEGCKGRDWFDIIAS 272
           V  D S+   LLL+S+  +  VP+++ G    I   IT+  ++             + A 
Sbjct: 12  VKPDTSVRDALLLMSENGVSAVPVVDDGKLVGI---ITERDIL-----------RALAAG 57

Query: 273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-NIGGIPVVEGQQKKIVGNVSIRDI 331
                     M+   V+T+  +  + EA + M +   I  +PVV+    K+VG +++ DI
Sbjct: 58  GKRLLPVKEVMTKP-VVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116

Length = 117

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 345
            +VIT++ ++ + +  + +    I G+PVV+  + ++VG VS  D+   + K +      
Sbjct: 1   KDVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVT 59

Query: 346 QLTVRDFMNAVVPTTPDSGKVN-----PPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 400
            L    F++          KV        IT   ++T+  V   ++ K++ R+ VV  ++
Sbjct: 60  LLYSVIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVV--DD 117

Query: 401 AEVVGVITLRDVISC 415
            ++VG+I+  D+I  
Sbjct: 118 GKLVGIISRGDIIRS 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 29/131 (22%)

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD----IRHLLLKPELFSN 343
           V T++    I EA + +       +PVVEG   ++VG +S RD    +RH          
Sbjct: 4   VKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRH---------G 52

Query: 344 FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV 403
                V+D+M+  V T      V P      ++ L  V   +    + R+ VV      +
Sbjct: 53  LGHAPVKDYMSTDVVT------VPP------DTPLSEVQELMVEHDIGRVPVVEDG--RL 98

Query: 404 VGVITLRDVIS 414
           VG++T  D++ 
Sbjct: 99  VGIVTRTDLLR 109

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 19/128 (14%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
             +T   +  I EA + M ++ +  + VV+    ++VG V+ RD+R+ ++   L  +   
Sbjct: 2   PPVTCSPDTTIREAARLMTEHRVSSLLVVDDG--RLVGIVTDRDLRNRVVAEGLDPD--- 56

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
             V + M A            PPIT   ++T+   +  +  + +H + VV  ++  +VGV
Sbjct: 57  TPVSEVMTA------------PPITIPPDATVFEALLLMLERGIHHLPVV--DDGRLVGV 102

Query: 407 ITLRDVIS 414
           I+  D++ 
Sbjct: 103 ISATDLLR 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 20/127 (15%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
            +IT+  N  + EA +    ++I G PVV+    K+VG V++ DI H      +      
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHA-----IARGLEL 54

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
             V+D M   V            IT   +  L   I  +   +V R+ +V  +E   VG+
Sbjct: 55  AKVKDVMTKDV------------ITIDEDEQLYDAIRLMNKHNVGRL-IVTDDEGRPVGI 101

Query: 407 ITLRDVI 413
           IT  D++
Sbjct: 102 ITRTDIL 108

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
             P+S++    M++   ITI  +  + EA   M +  I  +PVV+    ++VG +S  D+
Sbjct: 56  DTPVSEV----MTAP-PITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDL 108

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 347
           V+TI  +  + E    +  +     PVV     ++VG VS+ DIR +L  P L+     +
Sbjct: 3   VVTIPEDTPLNELLDVIAHSPENNFPVV-DDDGRLVGIVSLDDIREILFDPSLYDL---V 58

Query: 348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 407
              D M              PP+    E +L   +         ++ VV  +  +++G++
Sbjct: 59  VASDIMT------------KPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGIL 106

Query: 408 TLRDVIS 414
           +  D++S
Sbjct: 107 SRSDLLS 113

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 24/129 (18%), Positives = 60/129 (46%), Gaps = 10/129 (7%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD-IRHLLLKPELFSNFR 345
           E +T   ++ + + +  M ++   G+PVV+ +  +++G ++ RD IR   ++  +    R
Sbjct: 2   EPVTCTPDDPVSKVWDLMLESGFTGLPVVQ-KAGELIGIITRRDIIRAGSVRTSVEDQQR 60

Query: 346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 405
             T        + +T       P  +   + ++ + +  +    + R+ VV  E+ ++VG
Sbjct: 61  TQTKASPTVEKIMST-------PVYSVTPDDSIATAVELMLEHDIGRLPVV-NEKDQLVG 112

Query: 406 VITLRDVIS 414
           ++   DV+ 
Sbjct: 113 IVDRHDVLK 121

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 12/125 (9%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQS----AVVQGLEGCKGRDWFDI 269
           V  D S++  L L+ +  +R +P+++ G   +   +T      A           + + +
Sbjct: 6   VTPDTSLMEALKLMKENSIRRLPVVDRGK--LVGIVTDRDLKLASPSKATTLDIWELYYL 63

Query: 270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329
           ++   +SD     M+ D  IT+  +  + EA + M +  I G+PVV+  Q ++VG ++  
Sbjct: 64  LSKIKVSD----IMTRD-PITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITES 117

Query: 330 DIRHL 334
           D+   
Sbjct: 118 DLFRA 122

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 19/125 (15%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPG-------TPDIKNYITQSAVVQGLEGCKGRDW 266
           V+ DD +     L+  + +  +P+IE G         DI +     A+       + R  
Sbjct: 6   VSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIAD-----ALRSFRPLVRDRHQ 60

Query: 267 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNV 326
              I + P+SD+    M+   VITI+ +  + +    M +NNIGG+PVV+    K+VG V
Sbjct: 61  ERRIRNLPVSDI----MTRP-VITIEPDTSVSDVASLMLENNIGGLPVVD--DGKLVGIV 113

Query: 327 SIRDI 331
           +  DI
Sbjct: 114 TRTDI 118

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 22/124 (17%)

Query: 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 344
               +TI  +  + EA K M+D  +  + VV+    K++G VS+  +             
Sbjct: 1   IKNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDN-KLLGIVSLESLEQAYK-------- 51

Query: 345 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 404
              ++ D M   V T      V P      +++L  V+  +  +    + VV  E+ ++V
Sbjct: 52  EAKSLEDIMLEDVFT------VQP------DASLRDVLGLVLKRGPKYVPVV-DEDGKLV 98

Query: 405 GVIT 408
           G+IT
Sbjct: 99  GLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 46.7 bits (112), Expect = 2e-05
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 21/125 (16%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
           + +T+  +  + EA   M    I G+PVV+    K+VG ++ RD+R        F     
Sbjct: 96  DPVTVTPDTTLAEALALMARYGISGVPVVDENG-KLVGIITNRDVR--------FETDLS 146

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
             V + M      T +       +T    +TL   +  L    + ++ VV  +   + G+
Sbjct: 147 QPVSEVM------TKE-----RLVTVPEGTTLEEALELLHEHRIEKLPVV-DDNGRLKGL 194

Query: 407 ITLRD 411
           IT++D
Sbjct: 195 ITVKD 199

Length = 486

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
           + ++E+IT+  N+ +++A K M + NI G+PVV+     IVG ++  DI
Sbjct: 86  IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDND--NIVGVITKTDI 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 13/66 (19%)

Query: 349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 408
           V+D M                +T   +++L   +  +    + R+ VV  E+ ++VG++T
Sbjct: 1   VKDIMT------------PDVVTVPPDTSLEEALELMRENGISRLPVV-DEDGKLVGIVT 47

Query: 409 LRDVIS 414
           LRD++ 
Sbjct: 48  LRDLLR 53

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 19/127 (14%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
           +V+T+  +  + E    M      G PVV+    ++VG V++ DIR +  +         
Sbjct: 2   DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR----EAT 55

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
           + V D M               P+T   + TL   +  +A + + R+ VV      +VG+
Sbjct: 56  VLVGDVMT------------RDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGI 102

Query: 407 ITLRDVI 413
           ++  D++
Sbjct: 103 VSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE 419
            P I     ++L   I  L S  +HR+ V   E  EV+G+++ R ++  F++E
Sbjct: 1   EPFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVE-FLWE 52

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
            MS+  +ITI  N  + EA K M  + I  +PVV+    ++VG V+  DI
Sbjct: 63  VMST-PLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDI 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 269
           P + +  + ++     L + + +   P+++ G   +   +T S +   +           
Sbjct: 2   PLITLNPNATLREAARLFNTHHIHGAPVVDDG--KLVGIVTLSDIAHAI--------ARG 51

Query: 270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329
           +    + D+    M+ D VITI  +E + +A + M  +N+G + V +  + + VG ++  
Sbjct: 52  LELAKVKDV----MTKD-VITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRT 105

Query: 330 DIRHL 334
           DI   
Sbjct: 106 DILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 344
           S  V+TI  +  I EA K M + NI  +PVV+    ++VG V+  DI   + + +     
Sbjct: 1   SRPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDK----- 54

Query: 345 RQLTVRDFMNA-VVPTTPD 362
              +V D M   V+  TPD
Sbjct: 55  --KSVEDIMTRNVITATPD 71

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 368 PPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 417
             +T   ++TL   +  L    + R+ VV  EE  +VG++T RD+I    
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVV-DEEGRLVGIVTRRDIIKALA 49

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 34/145 (23%)

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI---------------R 332
           V+T+     + EA + M DN+I G+PVV+    ++VG VS  D+                
Sbjct: 4   VVTVSPETSVAEAARLMLDNHISGLPVVD-DDGRLVGIVSEGDLLRRAELGTERRRARWL 62

Query: 333 HLLLKPEL----FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASK 388
            LL   E     F       V D M              P +T   ++ L  V   +   
Sbjct: 63  DLLAGAEELAAAFVRSHGRKVADVMTR------------PVVTVGEDTPLAEVAELMEEH 110

Query: 389 SVHRIYVVAGEEAEVVGVITLRDVI 413
            + R+ VV G    +VG+++  D++
Sbjct: 111 RIKRVPVVRGG--RLVGIVSRADLL 133

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 24/126 (19%)

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 347
           VIT+  +  + +  K +K+    G PVV+    K+VG VS RD   LL K          
Sbjct: 4   VITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARD---LLGKDPD------E 52

Query: 348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 407
           TV + M      + D     P      E  +      +    + ++ VV  E   +VG+I
Sbjct: 53  TVEEIM------SKDLVVAVP------EMDIMDAARVMFRTGISKLPVV-DENNNLVGII 99

Query: 408 TLRDVI 413
           T  DVI
Sbjct: 100 TNTDVI 105

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 20/135 (14%)

Query: 197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ 256
             V++++        + V  DD++     L  +  +R  P+++     I   IT S + +
Sbjct: 172 EKVKNLMSK----KLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAK 225

Query: 257 GLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE 316
            +                +SD          VITI  +E I +A + M  NN+G + V +
Sbjct: 226 AIANGN--------LDAKVSDYMRK-----NVITINEDEDIYDAIRLMNKNNVGRLLVTD 272

Query: 317 GQQKKIVGNVSIRDI 331
               K VG ++  DI
Sbjct: 273 -SNGKPVGIITRTDI 286

Length = 294

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 23/138 (16%)

Query: 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD-IRH------LLLK 337
           S +V+T+  +  + EA+  ++ + I  +PVV+G + ++VG V+ RD +RH        L+
Sbjct: 1   SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDR-RLVGIVTQRDLLRHARPDGRRPLR 59

Query: 338 PELFSNFRQLTVRDFMNAVVPT-TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVV 396
             L    +  TV D M+  V T  PD+     PI          ++  LA    H + VV
Sbjct: 60  GRLRGRDKPETVGDIMSPPVVTVRPDT-----PI--------AELVPLLADGGHHHVPVV 106

Query: 397 AGEEAEVVGVITLRDVIS 414
             E+  +VG++T  D+I+
Sbjct: 107 -DEDRRLVGIVTQTDLIA 123

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
           M+S  VITI +N+ I +A   M +NNI  +PV++  + K+ G V+  DI
Sbjct: 64  MNSP-VITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 20/128 (15%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIK--NYITQSAVVQGLEGCKGRDW-FDII 270
           ++ + ++  VL L+ +  +  +P++E G    K    IT             RD  F   
Sbjct: 93  ISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIIT------------KRDIRFVKD 140

Query: 271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD 330
             +P+S++    M+ +EVIT+     + EA K + ++ I  +PVV+    ++VG ++++D
Sbjct: 141 KGKPVSEV----MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNG-ELVGLITMKD 195

Query: 331 IRHLLLKP 338
           I      P
Sbjct: 196 IVKRRKFP 203

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 20/110 (18%)

Query: 222 SVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLP 281
            VL LL +Y++  VP+++    ++   IT+                D++ +     L L 
Sbjct: 14  DVLELLKEYKVSGVPVVKKSG-ELVGIITRK---------------DLLRNPEEEQLAL- 56

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
            M+ D   T+  ++ + EA K M +NNI  +PVV+    K+VG V++ DI
Sbjct: 57  LMTRD-PPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADI 103

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 10/127 (7%)

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL 347
           + T + +  +++    + +  +  +P+V+ +  K+V   S  D+ +L  K   ++N   L
Sbjct: 3   IATARPDTPLIDVLDMLVERRVSALPIVD-ENGKVVDVYSRFDVINLA-KEGAYNNLD-L 59

Query: 348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 407
           TV +   A+   + D   V    TC  +  L ++   +    VHR+ VV  E   V G+I
Sbjct: 60  TVGE---ALERRSQDFEGV---RTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGII 112

Query: 408 TLRDVIS 414
           +L D++ 
Sbjct: 113 SLSDILQ 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (91), Expect = 8e-04
 Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 27/125 (21%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTP-------DIKNYITQSAVVQGLEGCKGRDW 266
           V+ DD++     L+ ++ +  +P+ E           DI        VV+ +   +GRD 
Sbjct: 6   VSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDI--------VVRAV--AEGRD- 54

Query: 267 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNV 326
                +  + D+    M+   V+T+  ++ + EA + M+++ +  +PVV+    ++VG V
Sbjct: 55  ---PDTTTVGDV----MTRG-VVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIV 105

Query: 327 SIRDI 331
           S+ D+
Sbjct: 106 SLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 19/127 (14%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
           +  TI  +  I EA   M   N   I V +  ++K+ G V+  DI    L  +LF +F +
Sbjct: 2   DFPTIDEDASIREALHEMLKYNTNEIIVKD-NEEKLKGVVTFTDI----LDLDLFESFLE 56

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
             V + ++                    E T+   +  +  K + R+ VV  ++ +++GV
Sbjct: 57  KKVFNIVS------------QDVFYVNEEDTIDEALDIMREKQIGRLPVV--DDNKLIGV 102

Query: 407 ITLRDVI 413
           +  +D++
Sbjct: 103 VRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 35/149 (23%)

Query: 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 345
           +++ T+     +L     M+ N +G + VV+    K VG ++ RD+     +       +
Sbjct: 1   EDIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPK 59

Query: 346 Q--------------------LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSL 385
           +                    L   D M      T +   V+P         +      +
Sbjct: 60  KSIKMKRKAGQKRYRYVKEVPLVAEDIM------TEEIITVSP------NDDVVDAAKLM 107

Query: 386 ASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
              ++  + VV  +   +VGVIT  D+  
Sbjct: 108 LEANISGLPVVDND--NIVGVITKTDICR 134

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
           + + +T   +E + +A KRM + +IG +PVV+    ++VG VS  D+
Sbjct: 63  TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 17/125 (13%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 348
             +  N  I  A   M  +    +PVV+  +K++VG ++  D+    L+ E   + +   
Sbjct: 4   SCVVLNTDIARAVAEMYTSGSRALPVVD-DKKRLVGIITRYDVLSYALESEELKDAK--- 59

Query: 349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 408
           VR+ MN+            P IT     ++      +++ ++ R+ V+  +  +V G++T
Sbjct: 60  VREVMNS------------PVITIDANDSIAKARWLMSNNNISRLPVLDDK-GKVGGIVT 106

Query: 409 LRDVI 413
             D++
Sbjct: 107 EDDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 265 DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVG 324
           D  D+   +   +  +  + S +V  +   + I EA   M++  IG +PVV+    K++G
Sbjct: 44  DILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD--DNKLIG 101

Query: 325 NVSIRDIR 332
            V  +DI 
Sbjct: 102 VVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 18/130 (13%)

Query: 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL--FSN 343
           +EV  +Q    +  A   +  +    IPV++ ++ K VG +S+ DI   L   E      
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLD-KEGKYVGTISLTDILWKLKGLENLDLER 59

Query: 344 FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV 403
              L V D MN  VP                ++ +  ++H L          V  ++   
Sbjct: 60  LVDLKVIDVMNTDVP------------VIIDDADIEEILHLLID---QPFLPVVDDDGIF 104

Query: 404 VGVITLRDVI 413
           +G+IT R+++
Sbjct: 105 IGIITRREIL 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 23/101 (22%)

Query: 313 PVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITC 372
           PVV+ ++ K+VG V+ +D+     K          T+   M               PIT 
Sbjct: 29  PVVD-EKNKVVGIVTSKDV---AGKD------PDTTIEKVMT------------KNPITV 66

Query: 373 KLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI 413
             ++++ SV H +  + +  + VV  +  +++G+I+ +DV+
Sbjct: 67  NPKTSVASVAHMMIWEGIEMLPVV-DDNKKLLGIISRQDVL 106

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 32/133 (24%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN-FRQL 347
           +T   +  + EA +++  + I G PVV+     +VG +S +D     LK  L S+     
Sbjct: 4   VTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQD----CLKQLLESSYHCDG 58

Query: 348 --TVRDFMNAVVPT-TPDSGKVNPPITCKLESTLGSVIHSLAS---KSVHRIY-VVAGEE 400
             TVRD M   V T +PD                 S++  LA    K+  + Y VV  ++
Sbjct: 59  VATVRDIMTTEVLTVSPDD----------------SIV-DLAQLMLKAKPKRYPVV--DD 99

Query: 401 AEVVGVITLRDVI 413
            ++VG I+ RDV+
Sbjct: 100 GKLVGQISRRDVL 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 28/67 (41%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 112 AAAAFSVGTATAAGVGTGTVGALGA-LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAG 170
           A AA  VGT  AAG G     A GA LA G    AA      A  GAA AGG ++   AG
Sbjct: 271 AGAA--VGTGLAAG-GAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAG 327

Query: 171 KDAPTAA 177
               + A
Sbjct: 328 AAGGSGA 334

Length = 440

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 19/127 (14%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
           +++ +   + + E  + + ++    IPV +G    I+G V ++D    LL+  L      
Sbjct: 217 DIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKD----LLR-ALLDGQSD 271

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
           L +R  +       P++             +L  ++     +  H + +V  E   V G+
Sbjct: 272 LDLRVLVRP-PLFVPET------------LSLSDLLEEFREERTH-MAIVVDEYGGVEGL 317

Query: 407 ITLRDVI 413
           +TL D+I
Sbjct: 318 VTLEDII 324

Length = 429

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
           +  D+ +T+  +  + EA+  M +NN+  +PVV+ ++ K++G VS+ D+
Sbjct: 73  LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVD-EEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLL-----LKPEL 340
            V+T+  ++ + +A + M+++ I  +PVV  +  K+VG ++ RD+ R  L        E 
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVN-EDGKLVGLLTQRDLLRAALSSLSDNGEES 60

Query: 341 FSNFRQLTVRDFMNA-VVPTTPDSG 364
            +  R + V + M   V+  TPD+ 
Sbjct: 61  LTKERDVPVAEVMKTDVLTVTPDTP 85

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
           M+ D  IT+  +  + EA K + +N+I  +PVV+    +++G ++ +D+
Sbjct: 73  MTRD-PITVSPDTPVDEASKLLLENSISCLPVVDENG-QLIGIITWKDL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 12/122 (9%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ----SAVVQGLEGCKGRDWFDI 269
           ++ DDS+     L+ ++R+R++P++      +   +TQ     A +  L    G +    
Sbjct: 6   LSEDDSLADAEELMREHRIRHLPVVN-EDGKLVGLLTQRDLLRAALSSLSDN-GEESLTK 63

Query: 270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329
               P++++    M +D V+T+  +  + EA + M +N IG +PVV+  +  +VG ++  
Sbjct: 64  ERDVPVAEV----MKTD-VLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRS 117

Query: 330 DI 331
           D 
Sbjct: 118 DF 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 22/127 (17%), Positives = 55/127 (43%), Gaps = 19/127 (14%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
           +++ + +++ + E  + + ++     PV +G    I+G V ++D+   L + E   + R 
Sbjct: 2   DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEEDLDLRD 61

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
           L +R          P+S  ++             ++  +  +  H + +V  E     G+
Sbjct: 62  L-LRP-----PLFVPESTPLD------------DLLEEMRKERSH-MAIVVDEYGGTAGL 102

Query: 407 ITLRDVI 413
           +TL D++
Sbjct: 103 VTLEDIL 109

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
           +++T+  +E + EA K M+ NNI    VV+ +  ++VG +SIRD+
Sbjct: 66  DLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQK-KIVGNVSIRD 330
             P+ D     MSS  VIT   N+ + +A  RM +N+   + VV      K+VG ++ +D
Sbjct: 70  DLPVYDA----MSS-PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKD 124

Query: 331 I 331
           +
Sbjct: 125 V 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	438
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.97
COG2524	294	Predicted transcriptional regulator, contains C-te	99.77
COG2524	294	Predicted transcriptional regulator, contains C-te	99.71
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.65
COG3620	187	Predicted transcriptional regulator with C-termina	99.63
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.6
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.58
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.58
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.58
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.57
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.56
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.56
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.53
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.52
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.52
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.52
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.52
COG3620	187	Predicted transcriptional regulator with C-termina	99.52
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.51
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.5
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.5
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.5
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.5
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.5
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.5
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.49
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.49
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.49
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.48
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.48
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.48
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.48
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.48
COG2905	610	Predicted signal-transduction protein containing c	99.48
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.48
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.47
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.47
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.47
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.47
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.47
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.47
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.47
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.47
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.47
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.47
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.46
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.46
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.46
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.46
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.45
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.45
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.45
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.45
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.45
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.44
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.44
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.44
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.44
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.44
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.44
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.43
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.43
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.43
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.42
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.42
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.42
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.42
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.41
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.41
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.41
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.41
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.41
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.4
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.4
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.4
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.39
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.39
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.39
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.39
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.38
PRK11573	413	hypothetical protein; Provisional	99.38
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.38
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.38
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.38
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.38
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.38
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.38
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.37
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.37
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.37
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.37
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.37
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.37
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.37
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.37
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.36
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.36
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.35
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.35
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.35
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.35
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.35
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.35
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.34
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.34
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.34
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.34
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.34
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.34
COG0517	117	FOG: CBS domain [General function prediction only]	99.34
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.33
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.33
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.33
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.33
COG4109	432	Predicted transcriptional regulator containing CBS	99.33
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.33
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.32
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.32
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.31
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.31
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.31
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.31
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.3
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.3
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.3
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.29
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.29
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.29
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.29
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.28
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.28
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.28
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.28
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.28
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.27
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.27
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.27
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.27
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.27
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.27
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.27
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.27
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.27
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.26
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.26
COG2905	610	Predicted signal-transduction protein containing c	99.26
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.26
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.25
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.25
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.23
COG0517	117	FOG: CBS domain [General function prediction only]	99.23
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.23
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.23
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.23
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.23
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.22
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.21
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.21
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.21
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.21
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.2
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.2
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.18
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.17
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.15
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.15
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.14
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.12
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.11
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.11
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.09
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.08
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.08
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.06
COG4109	432	Predicted transcriptional regulator containing CBS	99.05
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.04
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.02
PRK11573	413	hypothetical protein; Provisional	99.02
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.98
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.97
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.97
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.9
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.82
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.75
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.71
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.7
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.66
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.65
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.6
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.36
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.35
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.24
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.21
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.15
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.99
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.94
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.72
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.72
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.59
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.52
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.97
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.38
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.01
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.84
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	93.53
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	92.58
KOG2118	498	consensus Predicted membrane protein, contains two	86.59
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	86.02

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.97  E-value=9.1e-30  Score=251.75  Aligned_cols=294  Identities=26%  Similarity=0.379  Sum_probs=241.3

Q ss_pred             CCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHHhhhhcccccccccccCCcccccchh
Q 013669           57 DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGA  136 (438)
Q Consensus        57 ~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  136 (438)
                      ..++.+|+..|..+.++++||+|...       ++++|++++.|++..++..+...                        
T Consensus        84 ~~~v~~a~~~l~~~~~~~~p~~~~~~-------~~~~g~~~~~d~i~~~~~~~~~~------------------------  132 (381)
T KOG1764|consen   84 KLSVKKAFNALVQNGVRAAPLWDSKK-------QQFVGMLTITDFITVLLRYYKSK------------------------  132 (381)
T ss_pred             CCcHHHHHHHHHhhceeeeccccCcc-------ceeEEEEEHHHHHHHHHHhhccC------------------------
Confidence            89999999999999999999999987       79999999999999877654210                        


Q ss_pred             hhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhccCCCCCCchhhhccccCCCCceEEeC
Q 013669          137 LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVAT  216 (438)
Q Consensus       137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~  216 (438)
                                                                 ...+....+..........+..+.....+++++.+.+
T Consensus       133 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p  169 (381)
T KOG1764|consen  133 -------------------------------------------SSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISP  169 (381)
T ss_pred             -------------------------------------------CcHHHHhhhhhhhccccchhhhhhccccCCCceeecC
Confidence                                                       0112222232233333344555555556677799999


Q ss_pred             CCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceEEcCCCc
Q 013669          217 DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNEL  296 (438)
Q Consensus       217 ~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~  296 (438)
                      ..++.++...+.+++++++||.|.+.+++.+++|+..|++++..+.+.-++..+..+++.+++++.+.  ++..+..+++
T Consensus       170 ~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~--~i~~i~~~~~  247 (381)
T KOG1764|consen  170 ESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWS--NIASISEDTP  247 (381)
T ss_pred             cHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhh--hheeecCCCc
Confidence            99999999999999999999999666899999999999999998866666778889999999887554  6999999999


Q ss_pred             HHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc-HHHHhcccCCCCCCCCCCCCCeEeCCC
Q 013669          297 ILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT-VRDFMNAVVPTTPDSGKVNPPITCKLE  375 (438)
Q Consensus       297 l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~-v~~~m~~~~~~~~~~~~~~~~~~v~~~  375 (438)
                      +.+|+++|.+++++++||++. .|+.+|+++..|+..+........  ...+ +.+.....      ..+..++++|+++
T Consensus       248 v~~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~~--~~~~~l~~~~~~~------~~~~~~vvtc~~~  318 (381)
T KOG1764|consen  248 VIEALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYNN--LDLSCLSEALSHR------PIRFEGVVTCRPT  318 (381)
T ss_pred             HHHHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccCc--cchhHHHHHhhhc------ccccCccEEEeec
Confidence            999999999999999999998 777799999999999987654422  1233 55555431      1233468999999


Q ss_pred             CCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcccccchhhHHHhh
Q 013669          376 STLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLL  436 (438)
Q Consensus       376 ~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~~~~~~~~~~~~  436 (438)
                      +||.+++.+|..+++||+||||++| +++|+||++||+.++..+|.+++...+++......
T Consensus       319 ssL~~vi~~lv~~~vHRl~VVd~~~-~l~GvvSLsDil~~l~~~p~~~~~~~~~~~~~~~~  378 (381)
T KOG1764|consen  319 STLAEVIDKLVAHRVHRLWVVDEDG-VLVGVISLSDILSYLVLTPSGGTPDAPSSSMSTSE  378 (381)
T ss_pred             chHHHHHHHHHhcCceEEEEEcCCC-cEEEEeeHHHHHHHHHhCccCCCCCCcCccccccC
Confidence            9999999999999999999999998 99999999999999999999999998887665443

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.77  E-value=4.6e-18  Score=153.33  Aligned_cols=124  Identities=27%  Similarity=0.457  Sum_probs=115.0

Q ss_pred             cccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      +...++.+    +|++ +++++.+++++.++.+.|.++++++.||+|  +++++|++|.+|+..++.+...     ...|
T Consensus       169 iPk~~V~~----~~s~-~~i~v~~d~tl~eaak~f~~~~i~GaPVvd--~dk~vGiit~~dI~~aia~g~~-----~~kV  236 (294)
T COG2524         169 IPKEKVKN----LMSK-KLITVRPDDTLREAAKLFYEKGIRGAPVVD--DDKIVGIITLSDIAKAIANGNL-----DAKV  236 (294)
T ss_pred             cCcchhhh----hccC-CceEecCCccHHHHHHHHHHcCccCCceec--CCceEEEEEHHHHHHHHHcCCc-----cccH
Confidence            46778888    7887 999999999999999999999999999999  4699999999999999987644     5689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .++|.+            ++++++.++.+.||+++|..+++.|+.|+|.+| +++|+||++||++.++.
T Consensus       237 ~~~M~k------------~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~g-kpvGiITrTDIL~~ia~  292 (294)
T COG2524         237 SDYMRK------------NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNG-KPVGIITRTDILTRIAG  292 (294)
T ss_pred             HHHhcc------------CCceEcCchhHHHHHHHHHhcCcceEEEEccCC-cEEEEEehHHHHHHhhc
Confidence            999996            999999999999999999999999999999988 99999999999998874

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.71  E-value=1.1e-16  Score=144.54  Aligned_cols=126  Identities=25%  Similarity=0.415  Sum_probs=116.1

Q ss_pred             cCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccc
Q 013669          191 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII  270 (438)
Q Consensus       191 ~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l  270 (438)
                      -......+|.++|+    .+++++.+++|+.+|..+|.++++++.||+|+  ++++|++|.+|+...+.++.        
T Consensus       166 m~siPk~~V~~~~s----~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~--------  231 (294)
T COG2524         166 MVSIPKEKVKNLMS----KKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGN--------  231 (294)
T ss_pred             eeecCcchhhhhcc----CCceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCC--------
Confidence            34455678999999    88999999999999999999999999999997  49999999999999998873        


Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ...++++    +|.+ +++++.+++.+.+|+++|..++++++.|+|. +|+++|+||+.|++..+.
T Consensus       232 ~~~kV~~----~M~k-~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         232 LDAKVSD----YMRK-NVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ccccHHH----Hhcc-CCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhh
Confidence            5678999    8997 9999999999999999999999999999998 899999999999998765

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.65  E-value=3.4e-16  Score=143.75  Aligned_cols=128  Identities=24%  Similarity=0.438  Sum_probs=112.0

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc---ccccC
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS---NFRQL  347 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~---~~~~~  347 (438)
                      .+.+..+    +|++ ++++++.++++.+|.++|.+++++.+||+|+ +.+++|+++.+|+.+.... ..+.   .+...
T Consensus       243 ~~Ltcad----IMSr-dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-~~rl~GiVt~~dl~~~a~~-~p~qrlr~~~~~  315 (382)
T COG3448         243 GELTCAD----IMSR-DVVTVSTDTSIDHARKLLQEHRIKALPVLDE-HRRLVGIVTQRDLLKHARP-SPFQRLRFLRPP  315 (382)
T ss_pred             ccccHHH----hcCc-cceecCCcCChHHHHHHHHHcCccccccccc-ccceeeeeeHHHHhhccCc-chHHHhhccCCC
Confidence            4557777    8997 9999999999999999999999999999998 8999999999999875322 2222   23445


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      +++.+|++            ++.++.++++..+.+-++.+.+.|++||+|++| +++||||++|++..+..
T Consensus       316 ~vk~imt~------------~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g-~lvGIvsQtDliaal~r  373 (382)
T COG3448         316 TVKGIMTT------------PVVTVRPDTPAVELVPRLADEGLHALPVLDAAG-KLVGIVSQTDLIAALYR  373 (382)
T ss_pred             cccccccC------------cceeecCCCcHHHHHHHhhcCCcceeeEEcCCC-cEEEEeeHHHHHHHHHH
Confidence            78888885            899999999999999999999999999999998 99999999999999875

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.63  E-value=4.3e-15  Score=124.64  Aligned_cols=137  Identities=27%  Similarity=0.457  Sum_probs=113.3

Q ss_pred             eHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHH
Q 013669          250 TQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR  329 (438)
Q Consensus       250 t~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~  329 (438)
                      |.+.|++++.++.+       ...+...    +|+. +++.|.+++++.++.++|.+++++.+||++  +++++|-||..
T Consensus        49 t~k~Il~aL~e~e~-------~~ita~~----iM~s-pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~--~~k~VGsItE~  114 (187)
T COG3620          49 TVKRILEALEEAEK-------TRITAKT----IMHS-PVVSVSPDDSISDVVNLMRDKGISQLPVIE--EDKVVGSITEN  114 (187)
T ss_pred             HHHHHHHHHHHhhc-------ceEeHhh----hccC-CeeEECchhhHHHHHHHHHHcCCccCceee--CCeeeeeecHH
Confidence            44666777776642       2234455    7886 999999999999999999999999999999  69999999999


Q ss_pred             HHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeH
Q 013669          330 DIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITL  409 (438)
Q Consensus       330 Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~  409 (438)
                      |+.+.+.+.  ...+.+..|+++|..            +..++++++++..+-+++..+.  .+.|+ ++| +++||||+
T Consensus       115 ~iv~~~le~--~e~i~~~~vr~vM~e------------~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G-~~vGIITk  176 (187)
T COG3620         115 DIVRALLEG--MESIRSLRVREVMGE------------PFPTVSPDESLNVISQLLEEHP--AVLVV-ENG-KVVGIITK  176 (187)
T ss_pred             HHHHHHhcc--ccchhhhhHHHHhcC------------CCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCC-ceEEEEeH
Confidence            999998653  245678899999985            8899999999999888888764  56666 555 99999999


Q ss_pred             HHHHHHhhc
Q 013669          410 RDVISCFIF  418 (438)
Q Consensus       410 ~DIl~~l~~  418 (438)
                      .||++.+..
T Consensus       177 ~DI~k~~~~  185 (187)
T COG3620         177 ADIMKLLAG  185 (187)
T ss_pred             HHHHHHHhc
Confidence            999998764

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.60  E-value=2.6e-14  Score=150.28  Aligned_cols=193  Identities=12%  Similarity=0.162  Sum_probs=145.5

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC--
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP--  274 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~--  274 (438)
                      .+|+++|.    .+++++++++++.+|+++|.+++++.+||+|++ |+++|++|..|+.+.+........+... ..+  
T Consensus        68 ~~V~dim~----~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~-~~t~~  141 (546)
T PRK14869         68 PQVRDLEI----DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKS-PTSLE  141 (546)
T ss_pred             CcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhc-CCCHH
Confidence            46999998    789999999999999999999999999999977 8999999999999876543211001100 000  


Q ss_pred             --------------------cccccc---------CCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC-------
Q 013669          275 --------------------ISDLGL---------PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-------  318 (438)
Q Consensus       275 --------------------v~~l~l---------~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-------  318 (438)
                                          ...+-+         ..+.+..++.+....   +....+.+.++++++|+...       
T Consensus       142 ~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~~~v~  218 (546)
T PRK14869        142 NIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVSEDVL  218 (546)
T ss_pred             HHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCCHHHH
Confidence                                000000         023333455554333   33446788999999888641       


Q ss_pred             ----CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhc-ccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEE
Q 013669          319 ----QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN-AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRI  393 (438)
Q Consensus       319 ----~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~-~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l  393 (438)
                          +..+.++.|..|.......-.     ...+|.++|+ .            +++++++++++.++.+.|.+++++++
T Consensus       219 ~la~~~~i~ii~t~~dt~~t~~~l~-----~~~~V~~iM~~~------------~~~~~~~~~~~~~~~~~m~~~~~~~~  281 (546)
T PRK14869        219 ELAKENGVTVISTPYDTFTTARLIN-----QSIPVSYIMTTE------------DLVTFSKDDYLEDVKEVMLKSRYRSY  281 (546)
T ss_pred             HHHHhCCCeEEEecccHHHHHHHhh-----cCCCHHHhccCC------------CcEEECCCCcHHHHHHHHHhcCCCce
Confidence                225889999999887754311     3678999998 5            88999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEeHHHHHHHh
Q 013669          394 YVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       394 ~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                      ||+|++| +++|+||.+|+++..
T Consensus       282 PVvd~~g-~lvGiit~~dl~~~~  303 (546)
T PRK14869        282 PVVDEDG-KVVGVISRYHLLSPV  303 (546)
T ss_pred             EEEcCCC-CEEEEEEHHHhhccc
Confidence            9999988 999999999999854

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.58  E-value=3.4e-14  Score=117.02  Aligned_cols=109  Identities=18%  Similarity=0.340  Sum_probs=95.3

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+.+.+.++|+++ +++++|+++..|+.....  .   .....++.++|..           
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~--~---~~~~~~v~~~~~~-----------   64 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGP--N---DYETLKVCEVYIV-----------   64 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcc--c---cccccChhheeec-----------
Confidence            4678899999999999999999999999997 789999999999987421  1   1123578899874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.+|+++|.+++.+++||+|++| +++|+||.+|+++
T Consensus        65 -~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~-~~~Giit~~di~~  110 (111)
T cd04603          65 -PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEG-KLVGTIYERELLR  110 (111)
T ss_pred             -CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCC-eEEEEEEhHHhhc
Confidence             788999999999999999999999999999887 9999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=2.8e-14  Score=115.03  Aligned_cols=95  Identities=19%  Similarity=0.341  Sum_probs=85.8

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      +++++++++++.++.+.|.+++++++||+|+++|+++|++|..|+...+.                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence            57899999999999999999999999999962479999999999976421                              


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCC-CCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE-EAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~-g~~lvGvIT~~DIl~  414 (438)
                        ++++.+++++.+|+++|.+++++++||+|++ | +++|+||.+||++
T Consensus        52 --~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~-~~~giit~~d~~~   97 (98)
T cd04618          52 --LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTG-TGLYILTSRRILK   97 (98)
T ss_pred             --eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCC-CceEEeehhhhhc
Confidence              4679999999999999999999999999987 6 9999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=4.9e-14  Score=116.56  Aligned_cols=112  Identities=19%  Similarity=0.266  Sum_probs=97.6

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      .+.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..|++..+.....  .....++.++|..           
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~--~~~~~~v~~~~~~-----------   67 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGG--PGCTAPVENVMTR-----------   67 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCC--CcccCCHHHHhcC-----------
Confidence            4678899999999999999999999999997 8899999999999876542111  1234679999975           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       +++++.+++++.++++.|.+++.+++||+|++| +++|+||++|+++
T Consensus        68 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~~Gvi~~~dl~~  113 (114)
T cd04619          68 -AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENA-RPLGVLNARDALK  113 (114)
T ss_pred             -CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCC-cEEEEEEhHhhcc
Confidence             889999999999999999999999999999887 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.57  E-value=1.6e-14  Score=132.80  Aligned_cols=131  Identities=21%  Similarity=0.367  Sum_probs=113.3

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      +...++.+||+    +.++++.+++++.+|..+|.+++++.+||+|++ .+++||+|++|+++...... ...+..+...
T Consensus       242 ~~~LtcadIMS----rdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~~p-~qrlr~~~~~  315 (382)
T COG3448         242 MGELTCADIMS----RDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLKHARPSP-FQRLRFLRPP  315 (382)
T ss_pred             hccccHHHhcC----ccceecCCcCChHHHHHHHHHcCcccccccccc-cceeeeeeHHHHhhccCcch-HHHhhccCCC
Confidence            34467899999    889999999999999999999999999999988 79999999999987443211 2222334566


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +++.    +|++ ++.++.++++..+.+-.+.+.+.+++||+|. .|+++||||..|++..+.
T Consensus       316 ~vk~----imt~-~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~  372 (382)
T COG3448         316 TVKG----IMTT-PVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             cccc----cccC-cceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHH
Confidence            7788    8997 8999999999999999999999999999998 999999999999998865

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.56  E-value=7.6e-14  Score=134.49  Aligned_cols=132  Identities=17%  Similarity=0.325  Sum_probs=112.9

Q ss_pred             ccCCccccccCCCCCC-CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          271 ASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~-~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      ...++++    +|+++ +++++..++++.++++.+.+++++++||+++..++++|+++.+|++..+....     ...++
T Consensus        65 ~~~~V~d----iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~-----~~~~l  135 (292)
T PRK15094         65 ADQRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA-----EAFSM  135 (292)
T ss_pred             CCCEEeE----EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC-----CcCCH
Confidence            5678999    89874 58999999999999999999999999999862378999999999987643211     12357


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCccc
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  425 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~  425 (438)
                      .++|.             +++++.+++++.++++.|.+++.+.++|+|+.| .++|+||+.||++.+.++..+.++
T Consensus       136 ~~l~r-------------~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G-~viGiVTleDIle~ivGei~de~d  197 (292)
T PRK15094        136 DKVLR-------------QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-GVSGLVTIEDILELIVGEIEDEYD  197 (292)
T ss_pred             HHHcC-------------CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCC-CEEEEeEHHHHHHHHhCCCccccc
Confidence            88886             567999999999999999999999999999998 899999999999999987665554

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=5.3e-14  Score=117.43  Aligned_cols=119  Identities=21%  Similarity=0.379  Sum_probs=95.0

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+++++++||+++ +|+++|+++.+|++.++..... . ....++.+++...      ....
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~-~-~~~~~~~~~~~~~------~~~~   72 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAY-N-NLDLTVGEALERR------SQDF   72 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCcc-c-cccCCHHHHHhhc------ccCC
Confidence            5788999999999999999999999999987 8999999999999986543211 1 1122344443210      0011


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                      .++.++.+++++.++++.|.+++++++||+|++| +++|+||++|++++
T Consensus        73 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~~~Givt~~di~~~  120 (120)
T cd04641          73 EGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENK-RVEGIISLSDILQF  120 (120)
T ss_pred             CCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCC-CEEEEEEHHHhhcC
Confidence            3678999999999999999999999999999887 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=3e-13  Score=111.71  Aligned_cols=111  Identities=23%  Similarity=0.388  Sum_probs=96.4

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  365 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  365 (438)
                      ++.++.+++++.++++.|.+++.+.+||+++ + ++++|+++..|++..+.....  .....++.++|..          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~~G~v~~~dl~~~~~~~~~--~~~~~~v~~~~~~----------   68 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR-RESDAYGIVTMRDILKKVVAEGR--DPDRVNVYEIMTK----------   68 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CCCcEEEEEehHHHHHHHHhCCC--CCCccCHHHHhcC----------
Confidence            5788999999999999999999999999997 6 899999999999886543211  1234579999974          


Q ss_pred             CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                        ++.++++++++.++++.|.+++.+++||+|+ | +++|+||..||++
T Consensus        69 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~-~~~Gvi~~~dl~~  113 (114)
T cd04630          69 --PLISVSPDMDIKYCARLMERTNIRRAPVVEN-N-ELIGIISLTDIFL  113 (114)
T ss_pred             --CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-C-EEEEEEEHHHhhc
Confidence              7899999999999999999999999999998 6 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=3e-13  Score=112.54  Aligned_cols=114  Identities=20%  Similarity=0.294  Sum_probs=96.9

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+++..++||+|+ +++++|+++..|++.......   .+...++.++|..          .
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~---~~~~~~~~~~~~~----------~   67 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGA---DLQKVPVGVIMTR----------M   67 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCC---CccCCCHHHHhCC----------C
Confidence            5788999999999999999999999999997 789999999999988764211   1235578888862          0


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCC--CeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE--AEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g--~~lvGvIT~~DIl~  414 (438)
                      .++.++++++++.+++++|.+++++++||+|+++  |+++|+||++||++
T Consensus        68 ~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          68 PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            2578999999999999999999999999999872  39999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.52  E-value=3e-13  Score=111.41  Aligned_cols=110  Identities=28%  Similarity=0.460  Sum_probs=96.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      +++++.+++++.++.+.|.+.+...++|+++ +++++|+++.+|++..+.+...    ...++.++|..           
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~----~~~~v~~~~~~-----------   66 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLS----LDDPVSEVMNR-----------   66 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCC----cCCCHHHhhcC-----------
Confidence            4677899999999999999999999999987 7999999999999876543221    13478999974           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++.+++||+|++| +++|+||.+||+.
T Consensus        67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~di~~  112 (113)
T cd04607          67 -NPITAKVGSSREEILALMRERSIRHLPILDEEG-RVVGLATLDDLLS  112 (113)
T ss_pred             -CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEhHHhcc
Confidence             788999999999999999999999999999887 9999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.52  E-value=2.4e-13  Score=113.79  Aligned_cols=114  Identities=26%  Similarity=0.467  Sum_probs=97.6

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------ccccCcHHHHhcccCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------NFRQLTVRDFMNAVVPT  359 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~-------~~~~~~v~~~m~~~~~~  359 (438)
                      ++.++.+++++.++.+.|.+.+++++||+++ +|+++|+++..|++..+.......       .....++.++|..    
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----   77 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP----   77 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC----
Confidence            6788999999999999999999999999987 799999999999987764322100       0124468888874    


Q ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                              +++++.+++++.++++.|.+.+.+++||+|++| +++|+||..|+++
T Consensus        78 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g-~~~Gvit~~di~~  123 (124)
T cd04600          78 --------PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDR-RLVGIVTQTDLIA  123 (124)
T ss_pred             --------CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCC-CEEEEEEhHHhhc
Confidence                    789999999999999999999999999999887 9999999999986

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.52  E-value=2.6e-13  Score=136.97  Aligned_cols=130  Identities=18%  Similarity=0.318  Sum_probs=113.1

Q ss_pred             ccCCccccccCCCCCC-CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          271 ASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~-~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      .+.++++    +|+++ ++++++.++++.++++.|.+++++++||++++.++++|+++.+|++..+..       ...++
T Consensus       189 ~~~~v~d----iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------~~~~l  257 (408)
T TIGR03520       189 GNTDTKQ----VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------KNFDW  257 (408)
T ss_pred             CCCEeee----eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------CCCCH
Confidence            5678999    89873 689999999999999999999999999998644799999999999876432       12357


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCccc
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  425 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~  425 (438)
                      .++|+             ++.++++++++.++++.|.+++.|..+|+|+.| .++|+||..||++.+.+|..+.++
T Consensus       258 ~~~~~-------------~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G-~~~GiVT~eDileeivgei~de~d  319 (408)
T TIGR03520       258 QSLLR-------------EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYG-GTSGLVTLEDIIEEIVGDISDEFD  319 (408)
T ss_pred             HHHcC-------------CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCC-CEEEEEEHHHHHHHHhCCCCCcCC
Confidence            78876             789999999999999999999999999999998 999999999999999987655443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.52  E-value=9.9e-14  Score=116.52  Aligned_cols=134  Identities=24%  Similarity=0.388  Sum_probs=113.6

Q ss_pred             chhhhhhhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcC
Q 013669          182 EDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGC  261 (438)
Q Consensus       182 ~~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~  261 (438)
                      ..+++.+.+.+. ...+++.+|+    +|++++.|++++.+++++|.+++++.+||++.  ++++|-||..+|.+.+.+.
T Consensus        51 k~Il~aL~e~e~-~~ita~~iM~----spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~  123 (187)
T COG3620          51 KRILEALEEAEK-TRITAKTIMH----SPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEG  123 (187)
T ss_pred             HHHHHHHHHhhc-ceEeHhhhcc----CCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhcc
Confidence            456666665554 5577899999    89999999999999999999999999999997  6999999999999998765


Q ss_pred             CCCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          262 KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       262 ~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .     +++....+++    +|.. ++.++++++++..+..++..++  ++.|++  +|+++|+||+.|++.++.
T Consensus       124 ~-----e~i~~~~vr~----vM~e-~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e--~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         124 M-----ESIRSLRVRE----VMGE-PFPTVSPDESLNVISQLLEEHP--AVLVVE--NGKVVGIITKADIMKLLA  184 (187)
T ss_pred             c-----cchhhhhHHH----HhcC-CCCcCCCCCCHHHHHHHHhhCC--eEEEEe--CCceEEEEeHHHHHHHHh
Confidence            2     3456778888    8986 8999999999988887777654  678886  799999999999998865

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.51  E-value=1.3e-13  Score=116.16  Aligned_cols=113  Identities=19%  Similarity=0.252  Sum_probs=96.4

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+++++++||+|+ +++++|+++..|++..+.....   ....++.++|..           
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~---~~~~~v~~im~~-----------   67 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKV---QPSDPVSKALYK-----------   67 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhcc---CCCCcHHHHhhc-----------
Confidence            6788999999999999999999999999997 7899999999999876543221   135689999985           


Q ss_pred             CCCeEeCCCCCHHHHHHHHH---------hCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          367 NPPITCKLESTLGSVIHSLA---------SKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~---------~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                       ++.++.+++++.++.++|.         +.+.+++||+|++| +++|+||.+||++++
T Consensus        68 -~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~Givt~~Dl~~~~  124 (124)
T cd04608          68 -QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQE-KPIGIVTKIDLLSYI  124 (124)
T ss_pred             -cceecCCCCCHHHHHhhcccCCceEEEecccccccccccccc-ceEEEEehhHhhhhC
Confidence             8899999999999999653         34678889999887 999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.50  E-value=5.7e-13  Score=110.13  Aligned_cols=111  Identities=20%  Similarity=0.314  Sum_probs=96.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++.+.|.+.+++.+||+++ +|+++|+++..|++..+.+...   ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~~-----------   66 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEA---GEPSAVDEVATP-----------   66 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcccc---cccccHHHhccC-----------
Confidence            4678899999999999999999999999997 7999999999999987643221   123458888874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCC--CCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE--EAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~--g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.+++++|.+++.+++||+|++  | +++|+||.+||++
T Consensus        67 -~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~-~~~Gvit~~di~~  114 (115)
T cd04593          67 -PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPG-QVLGLLTRENVLL  114 (115)
T ss_pred             -CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCC-eEEEEEEhHHhhc
Confidence             78999999999999999999999999999987  6 9999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=7.8e-13  Score=108.54  Aligned_cols=111  Identities=27%  Similarity=0.432  Sum_probs=96.3

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.++.++.++++.|.+++++.+||+++ +++++|+++..|++..+.....  .....++.++|..           
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~--~~~~~~~~~~~~~-----------   67 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGA--SALDTPVSEIMTR-----------   67 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCC--CccccCHHHhcCC-----------
Confidence            5778899999999999999999999999997 7899999999999987653211  1124578999874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+.+.+++||+++ | +++|+||..||++
T Consensus        68 -~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~-~~~Gvit~~di~~  112 (113)
T cd04623          68 -NVITVTPDDTVDEAMALMTERRFRHLPVVDG-G-KLVGIVSIGDVVK  112 (113)
T ss_pred             -CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-C-EEEEEEEHHHhhc
Confidence             7899999999999999999999999999998 6 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=4.6e-13  Score=111.70  Aligned_cols=117  Identities=15%  Similarity=0.211  Sum_probs=92.4

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccccc-CCccccccCCCCCCCc
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS-QPISDLGLPFMSSDEV  288 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~-~~v~~l~l~~m~~~~v  288 (438)
                      +++++++++++.+|++.|.+++++++||+|++ ++++|+++..|+++++...........+.. .....    +|.. ++
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~   75 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRS----QDFE-GV   75 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcc----cCCC-CC
Confidence            57899999999999999999999999999976 899999999999987643311000000000 01112    3443 67


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.+++++.++++.|.+++.+.+||+++ +|+++|+||.+|++.
T Consensus        76 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~  119 (120)
T cd04641          76 RTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQ  119 (120)
T ss_pred             eEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhc
Confidence            89999999999999999999999999997 689999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=5.4e-13  Score=111.83  Aligned_cols=115  Identities=29%  Similarity=0.400  Sum_probs=98.0

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCcccc--------ccccCcHHHHhcccC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFS--------NFRQLTVRDFMNAVV  357 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~--------~~~~~~v~~~m~~~~  357 (438)
                      ++.++.++.++.+++++|.+.+...+||+++ + |+++|+++..|++..+.+...+.        .....++.+++..  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~-~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE-GTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR--   78 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC-CCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC--
Confidence            5778899999999999999999999999997 5 99999999999998775432211        1123578888864  


Q ss_pred             CCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          358 PTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       358 ~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                                ++.++++++++.++++.|.+.+.+++||+|++| +++|+||..||+++
T Consensus        79 ----------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~-~~~Gvit~~di~~~  125 (125)
T cd04631          79 ----------NVITITPDDSIKDAAELMLEKRVGGLPVVDDDG-KLVGIVTERDLLKA  125 (125)
T ss_pred             ----------CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCC-cEEEEEEHHHhhcC
Confidence                      789999999999999999999999999999877 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=2.6e-13  Score=114.32  Aligned_cols=122  Identities=43%  Similarity=0.687  Sum_probs=92.6

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh---cccCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM---NAVVPTTPDS  363 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m---~~~~~~~~~~  363 (438)
                      +++++.+++++.++++.|.+++++.+||+|+ +|+++|+++..|++.........   ...+...++   ..... . ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~-~~   75 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDL---LLYRTITFKELSEKFTD-S-DG   75 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchh---hcccchhhhhhhhhccc-c-cc
Confidence            5788999999999999999999999999997 79999999999998876432211   010111000   00000 0 00


Q ss_pred             CCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          364 GKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       364 ~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                      ....++.++.+++++.+|+++|.+++.+++||+|+++ +++|+||.+||+++
T Consensus        76 ~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~-~~~Giit~~dil~~  126 (126)
T cd04642          76 VKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEG-KPIGVITLTDIISI  126 (126)
T ss_pred             cccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCC-CEEEEEEHHHHhcC
Confidence            0124789999999999999999999999999999887 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=5.7e-13  Score=111.21  Aligned_cols=115  Identities=23%  Similarity=0.354  Sum_probs=98.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc------ccccCcHHHHhcccCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS------NFRQLTVRDFMNAVVPTT  360 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~------~~~~~~v~~~m~~~~~~~  360 (438)
                      ++.++.+++++.++.+.|.+.+++.+||+++ +|+++|+++..|++..+.......      .....++.+++..     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----   75 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT-----   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC-----
Confidence            5788999999999999999999999999997 799999999999988764321100      1135678899874     


Q ss_pred             CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                             ++.++.+++++.++++.|.+.+.+++||+|++| +++|+||..|++++
T Consensus        76 -------~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~dl~~~  122 (122)
T cd04803          76 -------DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKG-TLVGIITRSDFLRL  122 (122)
T ss_pred             -------CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCC-CEEEEEEHHHhhcC
Confidence                   789999999999999999999999999999887 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=6.7e-13  Score=109.20  Aligned_cols=111  Identities=23%  Similarity=0.394  Sum_probs=96.8

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++..+.+++++.++++.|.+.+.+.+||+|+ +++++|+++..|++..+.+...   +...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~i~~~~~~-----------   66 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESEE---LKDAKVREVMNS-----------   66 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhhh---hcCCcHHHhccC-----------
Confidence            3677899999999999999999999999997 7899999999999876443322   234578899874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++..++++.++++.|.+++.+++||+|++| +++|+||..||++
T Consensus        67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g-~~~Gvvt~~dl~~  112 (113)
T cd04615          67 -PVITIDANDSIAKARWLMSNNNISRLPVLDDKG-KVGGIVTEDDILR  112 (113)
T ss_pred             -CceEECCCCcHHHHHHHHHHcCCCeeeEECCCC-eEEEEEEHHHhhc
Confidence             789999999999999999999999999999887 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=4e-13  Score=108.27  Aligned_cols=95  Identities=15%  Similarity=0.222  Sum_probs=84.9

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      +++++++++++.+|.+.|.+++++++||+|+++++++|++|..|+.+.+                         .   +.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------~---~~   53 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------R---LV   53 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------e---eE
Confidence            4789999999999999999999999999997437899999999986521                         0   67


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++++++||+++ + |+++|++|.+|++.
T Consensus        54 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~   97 (98)
T cd04618          54 SIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILK   97 (98)
T ss_pred             EeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhc
Confidence            8899999999999999999999999997 5 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.49  E-value=9.3e-14  Score=146.13  Aligned_cols=282  Identities=16%  Similarity=0.205  Sum_probs=173.5

Q ss_pred             CCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHHhhhhcccccccccccCCcccccchh
Q 013669           57 DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGA  136 (438)
Q Consensus        57 ~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  136 (438)
                      ++++.+|+++|.+++++.+||+|++        ++++|+|+..|+..++++..+....+                     
T Consensus        84 ~~~l~~a~~~m~~~~~~~lpVvd~~--------g~l~Givt~~di~~~~~~~~~~~~~~---------------------  134 (546)
T PRK14869         84 DTSLKEAWNLMDENNVKTLPVVDEE--------GKLLGLVSLSDLARAYMDILDPEILS---------------------  134 (546)
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHhhcchhhhh---------------------
Confidence            8899999999999999999999976        49999999999999887754311110                     


Q ss_pred             hhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhccCCCCCCchhhhccccCCCCceEEeC
Q 013669          137 LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVAT  216 (438)
Q Consensus       137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~  216 (438)
                           ..+..+..+..+..|..+.|+.......|+  ..+.....               ..+...+.   ...++.+..
T Consensus       135 -----~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~--~~v~a~~~---------------~~~~~~~~---~~~lvi~gd  189 (546)
T PRK14869        135 -----KSPTSLENIIRTLDGEVLVGAEEDKVEEGK--VVVAAMAP---------------ESLLERIE---EGDIVIVGD  189 (546)
T ss_pred             -----hcCCCHHHHHHhcCcEEEecCccccccccc--EEEEEcCH---------------HHHHHhcc---CCCEEEEcC
Confidence                 001122333322222222221111000000  00000000               01112222   123444433


Q ss_pred             CCCHHHHHHHHHhCCCCEEEEEcCC-----------CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCC-
Q 013669          217 DDSMLSVLLLLSKYRLRNVPIIEPG-----------TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMS-  284 (438)
Q Consensus       217 ~~sl~~al~~m~~~~i~~lpVvd~~-----------~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~-  284 (438)
                      ...   ....+.+.++++++|+...           ...+.++.|..|.........        ...++++    +|+ 
T Consensus       190 r~d---~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~--------~~~~V~~----iM~~  254 (546)
T PRK14869        190 RED---IQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLIN--------QSIPVSY----IMTT  254 (546)
T ss_pred             cHH---HHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHhh--------cCCCHHH----hccC
Confidence            333   2335678889999888653           236889999999987765432        3568899    898 


Q ss_pred             CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc------cccc-cc---cCcHHHHhc
Q 013669          285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE------LFSN-FR---QLTVRDFMN  354 (438)
Q Consensus       285 ~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~------~~~~-~~---~~~v~~~m~  354 (438)
                      . +++++++++++.++.+.|.+++++.+||+|+ +|+++|++|.+|++.....+-      .... ..   ...+.+++.
T Consensus       255 ~-~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiD  332 (546)
T PRK14869        255 E-DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-DGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIID  332 (546)
T ss_pred             C-CcEEECCCCcHHHHHHHHHhcCCCceEEEcC-CCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEec
Confidence            5 8999999999999999999999999999997 899999999999988643210      0000 00   000000110


Q ss_pred             c-cCCCCCCCCCCCCCeEe---CCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          355 A-VVPTTPDSGKVNPPITC---KLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       355 ~-~~~~~~~~~~~~~~~~v---~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                      . ..++.    ....++.+   ....+...+.++|.+.++...|++.. . .+.||+|-++.+++
T Consensus       333 HH~~~~~----~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~-~-ll~gIlsDT~~f~~  391 (546)
T PRK14869        333 HHRLGDI----QTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG-L-LLAAILSDTLLFKS  391 (546)
T ss_pred             CCccCCC----CCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH-H-HHHHHHHHhcCccC
Confidence            0 00000    11233333   44667778899999999887777754 2 68888888887764

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.48  E-value=1.2e-12  Score=107.14  Aligned_cols=107  Identities=29%  Similarity=0.444  Sum_probs=95.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+++++.+||+++ +|+++|+++..|++..+....       .++.++|..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~-------~~~~~~~~~-----------   63 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDK-------KSVEDIMTR-----------   63 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCc-------cCHHHhcCC-----------
Confidence            6788999999999999999999999999997 799999999999987654321       248888864           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++.+.+||++++| +++|+||+.||++
T Consensus        64 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~v~~~di~~  109 (110)
T cd04605          64 -NVITATPDEPIDVAARKMERHNISALPVVDAEN-RVIGIITSEDISK  109 (110)
T ss_pred             -CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCC-cEEEEEEHHHhhh
Confidence             788999999999999999999999999999887 9999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.48  E-value=4.4e-13  Score=110.64  Aligned_cols=111  Identities=23%  Similarity=0.328  Sum_probs=94.0

Q ss_pred             CceEEcCCCcHHHHHHHHHHcC-CceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  365 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  365 (438)
                      ++.++++++++.++++.|.+++ .+.+||+|+ +++++|+++..|++......     ....++.++|...         
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~-----~~~~~v~~~~~~~---------   66 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQ-----WAQTTVIQVMTPA---------   66 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhh-----ccccchhhhhccc---------
Confidence            5778999999999999997775 889999987 79999999999998875321     1245788888631         


Q ss_pred             CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       .++.++.+++++.++++.|.+++.+++||+|++| +++|+||.+||++
T Consensus        67 -~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~-~~~Gvl~~~di~~  113 (114)
T cd04801          67 -AKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSG-QVIGLITEADLLR  113 (114)
T ss_pred             -ccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCC-cEEEEEeccceec
Confidence             1467899999999999999999999999999887 9999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=4.8e-13  Score=112.11  Aligned_cols=113  Identities=18%  Similarity=0.261  Sum_probs=90.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCcccc---cc---ccCcHHHHhcccCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFS---NF---RQLTVRDFMNAVVPT  359 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~---~~---~~~~v~~~m~~~~~~  359 (438)
                      ++.++.+++++.++++.|.+++++++||+|+ + ++++|+++..|++..+.......   ..   ....+.++|.     
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   75 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE-ESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGT-----   75 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC-CCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCc-----
Confidence            5788999999999999999999999999997 5 89999999999987653211000   00   0011112333     


Q ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013669          360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI  413 (438)
Q Consensus       360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl  413 (438)
                             .++.++++++++.+|++.|.+++.+++||+|+++ +++|+||++||-
T Consensus        76 -------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~vGiit~~di~  121 (123)
T cd04627          76 -------SDVISINGDQPLIDALHLMHNEGISSVAVVDNQG-NLIGNISVTDVR  121 (123)
T ss_pred             -------CCceEeCCCCCHHHHHHHHHHcCCceEEEECCCC-cEEEEEeHHHhh
Confidence                   3788999999999999999999999999999987 999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=9.1e-13  Score=112.71  Aligned_cols=113  Identities=22%  Similarity=0.345  Sum_probs=96.3

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc--------------------cccc
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS--------------------NFRQ  346 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~--------------------~~~~  346 (438)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+++..|++..+.......                    ....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence            5778999999999999999999999999997 799999999999998764221100                    0124


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                      .++.++|..            ++.++.+++++.++++.|.+++.+++||+++ | +++|+||.+||++
T Consensus        81 ~~v~~~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~-~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAEDIMTE------------EIITVSPNDDVVDAAKLMLEANISGLPVVDN-D-NIVGVITKTDICR  134 (135)
T ss_pred             ccHHHhcCC------------CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-C-EEEEEEEHHHHhh
Confidence            578899874            7889999999999999999999999999987 6 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.3e-13  Score=108.61  Aligned_cols=109  Identities=23%  Similarity=0.312  Sum_probs=96.0

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+.+...+||+++ +++++|+++..|+...+....     ...++.++|..           
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~-----~~~~v~~~~~~-----------   64 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGG-----PDAPVRGVMRR-----------   64 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcC-----CCCcHHHHhcC-----------
Confidence            5678899999999999999889999999997 789999999999988764321     23478898874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++..++||+|++| +++|+||.+||.+
T Consensus        65 -~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~dl~~  110 (111)
T cd04639          65 -DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSG-RLVGLVTLENVGE  110 (111)
T ss_pred             -CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCC-CEEEEEEHHHhhc
Confidence             789999999999999999999999999999887 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.48  E-value=2.5e-13  Score=135.49  Aligned_cols=123  Identities=18%  Similarity=0.348  Sum_probs=108.1

Q ss_pred             CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHH
Q 013669          273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDF  352 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~  352 (438)
                      ..+.+    +++. ++++|++..++.+|..+|.+.|++++.++++ ++...||||.+|+.........   ....+|.++
T Consensus       149 trv~~----~~~~-~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~---~~~~~V~ev  219 (610)
T COG2905         149 TRVGE----VKTL-PAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGR---SKTQKVSEV  219 (610)
T ss_pred             HHHHH----HhcC-CCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCC---Ccccchhhh
Confidence            35555    4565 8999999999999999999999999999988 8999999999999887653222   246799999


Q ss_pred             hcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          353 MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       353 m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      |+.            |+++++.++.+.+|+-+|.+++++|+||.++  |+++|+||.+||++.+..
T Consensus       220 mT~------------p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         220 MTS------------PVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             hcc------------CceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHHhhCC
Confidence            995            9999999999999999999999999999876  499999999999998875

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1.1e-12  Score=107.55  Aligned_cols=109  Identities=25%  Similarity=0.370  Sum_probs=95.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++++++++.++++.|.+++.+++||+++ +|+++|+++..|++.+.....    ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~----~~~~~v~~~~~~-----------   65 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFES----FLEKKVFNIVSQ-----------   65 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcc----cccCcHHHHhcC-----------
Confidence            5778999999999999999999999999997 799999999999987643211    124578898874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++.+++||+|+ | +++|+||..||+.
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~di~~  110 (111)
T cd04626          66 -DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-N-KLIGVVRTKDILD  110 (111)
T ss_pred             -CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEhHHhcc
Confidence             7899999999999999999999999999998 6 9999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.47  E-value=8.6e-13  Score=107.83  Aligned_cols=105  Identities=22%  Similarity=0.382  Sum_probs=94.7

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++.+.|.+.+.+.+||+|+ +|+++|+++..|++...         ...++.++|..           
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~---------~~~~v~~~~~~-----------   61 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD---------PDTTIEKVMTK-----------   61 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc---------ccccHHHHhcC-----------
Confidence            6788999999999999999999999999997 89999999999997531         13478999974           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++.+.+||+|++| +++|+||..|+++
T Consensus        62 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~G~it~~di~~  107 (108)
T cd04596          62 -NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNK-KLLGIISRQDVLK  107 (108)
T ss_pred             -CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCC-CEEEEEEHHHhhc
Confidence             789999999999999999999999999999887 9999999999985

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=9.7e-13  Score=108.68  Aligned_cols=113  Identities=25%  Similarity=0.369  Sum_probs=94.6

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc--ccccCcHHHHhcccCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS--NFRQLTVRDFMNAVVPTTPDSG  364 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~--~~~~~~v~~~m~~~~~~~~~~~  364 (438)
                      +++++.+++++.++++.|.+++++.+||+|+ +++++|+++.+|++..+.......  .+...++.++|..         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~---------   71 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT---------   71 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC---------
Confidence            5788999999999999999999999999997 789999999999988764321110  0114578898874         


Q ss_pred             CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          365 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       365 ~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                         ++.++.+++++.++++.|.+.+  .+||+|++| +++|+||..|++++
T Consensus        72 ---~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~-~~~Gvit~~dil~~  116 (116)
T cd04643          72 ---DVPVIIDDADIEEILHLLIDQP--FLPVVDDDG-IFIGIITRREILKA  116 (116)
T ss_pred             ---CCceecCCCCHHHHHHHHhcCC--ceeEEeCCC-eEEEEEEHHHhhcC
Confidence               7899999999999999998865  599999887 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.47  E-value=5.5e-13  Score=131.10  Aligned_cols=121  Identities=17%  Similarity=0.258  Sum_probs=106.2

Q ss_pred             cCCccccccCCCCCCC--ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          272 SQPISDLGLPFMSSDE--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~--vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      ..++++    +|.+ +  +.++++++++.++.+.|.+.+...+||+|+ +|+++|+|+..|+...+.....    ...++
T Consensus       196 ~~~V~~----im~~-~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~~----~~~~v  265 (321)
T PRK11543        196 LNKVHH----LMRR-DDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGGA----LTTPV  265 (321)
T ss_pred             HhHHHH----Hhcc-CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCCC----cCCcH
Confidence            457778    7876 5  899999999999999999999999999997 8999999999999887643221    24579


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                      .++|..            ++.++.+++++.+|++.|.++++.++||||++| +++|+||++||+++
T Consensus       266 ~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGvIt~~di~~~  318 (321)
T PRK11543        266 NEAMTR------------GGTTLQAQSRAIDAKEILMKRKITAAPVVDENG-KLTGAINLQDFYQA  318 (321)
T ss_pred             HHhcCC------------CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHhc
Confidence            999985            789999999999999999999999999999888 99999999999974

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=9.3e-13  Score=108.87  Aligned_cols=111  Identities=19%  Similarity=0.419  Sum_probs=95.6

Q ss_pred             ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669          211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  290 (438)
Q Consensus       211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~  290 (438)
                      +..+.+++++.+|++.|.+++...+||+|++ |+++|++|..|+.+.+......     ....++.+    +|.. ++.+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~-----~~~~~v~~----~~~~-~~~~   71 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGP-----GCTAPVEN----VMTR-AVVS   71 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCC-----cccCCHHH----HhcC-CCee
Confidence            6788999999999999999999999999987 8999999999998866431111     13456777    6766 7899


Q ss_pred             EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      +.+++++.++++.|.+++...+||+++ +|+++|+|+.+|++.
T Consensus        72 v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~  113 (114)
T cd04619          72 CRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK  113 (114)
T ss_pred             ECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence            999999999999999999999999997 789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.47  E-value=9.8e-13  Score=134.33  Aligned_cols=119  Identities=22%  Similarity=0.316  Sum_probs=105.2

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  353 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m  353 (438)
                      ++.+    +|.+ +++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+|+...  .       ...++.++|
T Consensus        90 Kv~~----iMi~-~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~--~-------~~~~V~diM  154 (479)
T PRK07807         90 KSRD----LVFD-TPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV--D-------RFTQVRDVM  154 (479)
T ss_pred             cccc----cccc-CCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC--c-------cCCCHHHhc
Confidence            4456    6766 8999999999999999999999999999997 8899999999999543  1       124799999


Q ss_pred             cccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669          354 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  420 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~  420 (438)
                      ..            +++++++++++.+|++.|.+++++++||+|+++ +++|+||.+||++.....|
T Consensus       155 t~------------~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g-~lvGIIT~~DIl~~~~~~~  208 (479)
T PRK07807        155 ST------------DLVTLPAGTDPREAFDLLEAARVKLAPVVDADG-RLVGVLTRTGALRATIYTP  208 (479)
T ss_pred             cC------------CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHhhCCc
Confidence            85            899999999999999999999999999999988 9999999999999877643

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.47  E-value=1.4e-12  Score=106.86  Aligned_cols=108  Identities=21%  Similarity=0.485  Sum_probs=94.4

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  365 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  365 (438)
                      +++++.+++++.++.+.|.+.+.+.+||+++ + ++++|+++..|++....+...     ..++.+++.           
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-~~~~~~G~v~~~~l~~~~~~~~~-----~~~~~~~~~-----------   64 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG-DLDNIIGVVHVKDLLRALAEGEE-----DLDLRDLLR-----------   64 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-CCceEEEEEEHHHHHHHHHcCCC-----cCCHHHHhc-----------
Confidence            5788999999999999999999999999997 6 899999999999987653211     145777664           


Q ss_pred             CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                        ++.++.+++++.++++.|.+++.+++||+|++| +++|+||++|+++
T Consensus        65 --~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~di~~  110 (111)
T cd04590          65 --PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYG-GTAGLVTLEDILE  110 (111)
T ss_pred             --CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCC-CEEEEeEHHHhhc
Confidence              678999999999999999999999999999988 9999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.47  E-value=7.7e-13  Score=108.87  Aligned_cols=108  Identities=11%  Similarity=0.226  Sum_probs=93.0

Q ss_pred             ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669          211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  290 (438)
Q Consensus       211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~  290 (438)
                      ++++.+++++.+|++.|.+++.+.+||+|++ ++++|+++..|+.+.....        +...++.+    +|.. ++.+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~--------~~~~~v~~----~~~~-~~~~   68 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPND--------YETLKVCE----VYIV-PVPI   68 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhcccc--------ccccChhh----eeec-CCcE
Confidence            6788999999999999999999999999976 8999999999998732111        12346777    6765 7889


Q ss_pred             EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      +.+++++.+++++|.+++.+.+||+|+ +|+++|+||.+|+++
T Consensus        69 v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~  110 (111)
T cd04603          69 VYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR  110 (111)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence            999999999999999999999999997 799999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=8.4e-13  Score=108.69  Aligned_cols=112  Identities=26%  Similarity=0.373  Sum_probs=96.1

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++.+.|.+++.+.+||+++ +++++|+++..|++..+.... +......++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~-~~~~~~~~v~~~~~~-----------   68 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESS-YHCDGVATVRDIMTT-----------   68 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhh-hccCCCccHHHHhcc-----------
Confidence            5778999999999999999999999999997 789999999999987654321 111224578999874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++.+++||+|+ | +++|+||.+||++
T Consensus        69 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvit~~di~~  113 (114)
T cd04629          69 -EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-G-KLVGQISRRDVLR  113 (114)
T ss_pred             -CceEECCCCcHHHHHHHHHHhCCCccCEEEC-C-EEEEEEEHHHHhc
Confidence             7889999999999999999999999999998 6 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.5e-12  Score=106.86  Aligned_cols=110  Identities=25%  Similarity=0.389  Sum_probs=96.7

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++.+.|.+.+++.+||+++ +++++|+++..|++..+.....    ...++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~~----~~~~v~~~~~~-----------   65 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGID----LDTPVSEIMTR-----------   65 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccCC----CccCHHHhccC-----------
Confidence            5678899999999999999999999999997 7999999999999887654321    24578888874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++..++++.++++.|.+++...+||+|++| +++|++|..|+++
T Consensus        66 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g-~~~Gilt~~dl~~  111 (112)
T cd04624          66 -DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGG-ELVGVISIRDLVR  111 (112)
T ss_pred             -CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCC-cEEEEEEHHHhcc
Confidence             788999999999999999999999999999887 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.47  E-value=1.2e-12  Score=106.33  Aligned_cols=104  Identities=19%  Similarity=0.296  Sum_probs=92.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.++.++.++++.|.+++.+.++|+++ +|+++|+++..|++....          .++.++|..           
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~----------~~~~~~~~~-----------   59 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG----------GCCGDHAEP-----------   59 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc----------cchhhhccc-----------
Confidence            5678899999999999999999999999987 799999999999986521          247788864           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++...+||+|+++ +++|+||.+|+++
T Consensus        60 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~~l~~  105 (106)
T cd04582          60 -FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDG-RYVGEVTQRSIAD  105 (106)
T ss_pred             -CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence             668899999999999999999999999999887 9999999999985

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.3e-12  Score=110.18  Aligned_cols=114  Identities=25%  Similarity=0.455  Sum_probs=95.1

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc----------ccccccCcHHHHhccc
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL----------FSNFRQLTVRDFMNAV  356 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~----------~~~~~~~~v~~~m~~~  356 (438)
                      ++.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..|+..++.....          .......++.++|.. 
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS-   79 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC-
Confidence            5678999999999999999999999999997 7999999999999876532110          001223578888874 


Q ss_pred             CCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEe--CCCCeEEEEEeHHHHHH
Q 013669          357 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVA--GEEAEVVGVITLRDVIS  414 (438)
Q Consensus       357 ~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd--~~g~~lvGvIT~~DIl~  414 (438)
                                 +++++.+++++.++++.|.+.+.+.+||++  +++ +++|+||.+||++
T Consensus        80 -----------~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~-~~~Gvit~~di~~  127 (128)
T cd04632          80 -----------PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDT-KVVGILTKKDVLR  127 (128)
T ss_pred             -----------CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCC-cEEEEEEhHhhhc
Confidence                       789999999999999999999999999985  356 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.46  E-value=1.3e-12  Score=107.45  Aligned_cols=111  Identities=21%  Similarity=0.319  Sum_probs=96.8

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+++..+++.++.....   +...++.++|..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~---~~~~~v~~~~~~-----------   67 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLD---ILTLPVADVMTR-----------   67 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCc---cccCCHHHhhcc-----------
Confidence            5677899999999999999888899999997 7899999999999988754221   223479999975           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++.+.+||+|+++ +++|+||..||++
T Consensus        68 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~iG~it~~di~~  113 (114)
T cd04604          68 -NPKTIDPDALAAEALELMEENKITALPVVDDNG-RPVGVLHIHDLLR  113 (114)
T ss_pred             -CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC-CEEEEEEHHHhhc
Confidence             778999999999999999999999999999877 9999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.46  E-value=8.8e-13  Score=129.92  Aligned_cols=122  Identities=20%  Similarity=0.360  Sum_probs=103.6

Q ss_pred             cCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          272 SQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       272 ~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      ..++++    +|.+ ++++++++++++.++++.|.+++.+.+||+|+ +|+++|++|.+|+++.+....   .+...++.
T Consensus       201 ~~~V~d----im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~---~~~~~~v~  272 (326)
T PRK10892        201 LLRVSD----IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGI---DLRQASIA  272 (326)
T ss_pred             cCcHHH----HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCC---CcccCCHH
Confidence            345677    6764 37899999999999999999999888888887 899999999999987654321   12346899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                      ++|.+            +++++.+++++.+|++.|.+++++++||+|+ + +++|+||++||++.
T Consensus       273 ~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~-~lvGiit~~dil~~  323 (326)
T PRK10892        273 DVMTP------------GGIRVRPGILAVDALNLMQSRHITSVLVADG-D-HLLGVLHMHDLLRA  323 (326)
T ss_pred             HhcCC------------CCEEECCCCCHHHHHHHHHHCCCcEEEEeeC-C-EEEEEEEhHHhHhc
Confidence            99985            8899999999999999999999999999974 5 99999999999975

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.46  E-value=1.6e-12  Score=106.86  Aligned_cols=111  Identities=25%  Similarity=0.515  Sum_probs=97.3

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++.+.|.+.+++.+||+++ +++++|+++..|+...+.+...   ....++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~---~~~~~v~~~~~~-----------   66 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPSL---YDLVVASDIMTK-----------   66 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhcccc---cccEEHHHhccC-----------
Confidence            5788999999999999999999999999997 7899999999999887643222   123579999975           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAG-EEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~-~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+.+.+++||+|+ ++ +++|+||..||+.
T Consensus        67 -~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~-~~~Gvvt~~di~~  113 (114)
T cd04613          67 -PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG-KLLGILSRSDLLS  113 (114)
T ss_pred             -CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCC-EEEEEEEhHHhhc
Confidence             7899999999999999999999999999998 77 9999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.3e-12  Score=108.93  Aligned_cols=114  Identities=19%  Similarity=0.371  Sum_probs=96.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc------ccccCcHHHHhcccCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS------NFRQLTVRDFMNAVVPTT  360 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~------~~~~~~v~~~m~~~~~~~  360 (438)
                      +++++.+++++.++++.|.+.+++++||+|+ +|+++|+++..|++..........      .....++.++|..     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   75 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST-----   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC-----
Confidence            5788999999999999999999999999997 799999999999987532110000      0234578888864     


Q ss_pred             CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                             ++.++..++++.++++.|.+++.+++||+|++| +++|++|.+|+++
T Consensus        76 -------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g-~~~Gvit~~dl~~  121 (122)
T cd04635          76 -------PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKD-QLVGIVDRHDVLK  121 (122)
T ss_pred             -------CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCC-cEEEEEEhHHhhc
Confidence                   789999999999999999999999999999887 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.45  E-value=2.3e-12  Score=105.11  Aligned_cols=106  Identities=23%  Similarity=0.391  Sum_probs=94.4

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++..+.+++++.+++..|.+.++.++||+++ +++++|+++..|++.....        ..++.++|..           
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~--------~~~v~~~~~~-----------   62 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYKE--------AKSLEDIMLE-----------   62 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhhc--------CCcHhHhhcC-----------
Confidence            5778899999999999999999999999997 7899999999999876421        2368888874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       .+.++++++++.++++.|.+.+.+++||+|++| +++|+||.+|+++
T Consensus        63 -~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g-~~~Gvit~~~l~~  108 (109)
T cd04583          63 -DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDG-KLVGLITRSSLVD  108 (109)
T ss_pred             -CceEECCCCcHHHHHHHHHHcCCceeeEECCCC-eEEEEEehHHhhc
Confidence             788999999999999999999999999999887 9999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.2e-12  Score=105.08  Aligned_cols=94  Identities=18%  Similarity=0.366  Sum_probs=85.6

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      +++++.+++++.++++.|.+++++.+||+|+ +|+++|+++.+|++...                               
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~-------------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAKS-------------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcCC-------------------------------
Confidence            5788999999999999999999999999997 79999999999997631                               


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       .+.++.+++++.+++++|.+++.+++||+|++| +++|+||.+||++
T Consensus        50 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~-~~~Giit~~di~~   95 (96)
T cd04614          50 -EVVTATKRTTVSECAQKMKRNRIEQIPIINGND-KLIGLLRDHDLLK   95 (96)
T ss_pred             -CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence             147799999999999999999999999999887 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.45  E-value=2.8e-13  Score=138.60  Aligned_cols=179  Identities=16%  Similarity=0.251  Sum_probs=144.7

Q ss_pred             hhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHh-----CCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC
Q 013669          188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSK-----YRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK  262 (438)
Q Consensus       188 l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~-----~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~  262 (438)
                      +.....+...+++++|.    .++++++++.++.++++.|.+     ++...++|+|++ ++++|+++.+|++..   . 
T Consensus       122 i~~ll~~~e~tvg~iMt----~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a---~-  192 (449)
T TIGR00400       122 INLLLSYSDDSAGRIMT----IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-KHLKGVLSIRDLILA---K-  192 (449)
T ss_pred             HHHHhCCCcchHHHhCc----CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-CeEEEEEEHHHHhcC---C-
Confidence            33345577788999999    779999999999999999975     456779999876 899999999998642   1 


Q ss_pred             CCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc
Q 013669          263 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS  342 (438)
Q Consensus       263 ~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~  342 (438)
                              ...++++    +|.+ +++++.+++++.++++.|.+++...+||+|+ +|+++|+||.+|++..+.+.    
T Consensus       193 --------~~~~v~~----im~~-~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~~----  254 (449)
T TIGR00400       193 --------PEEILSS----IMRS-SVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQSE----  254 (449)
T ss_pred             --------CCCcHHH----HhCC-CCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHhh----
Confidence                    2346888    7876 7889999999999999999999999999997 89999999999999987631    


Q ss_pred             ccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          343 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       343 ~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                           ..+++|+.            ..++..+++++.+++..|.+++...++|.     .+.|++| ..++..|
T Consensus       255 -----~~ed~~~~------------~gv~~~~~~~l~~~~~~~~~~R~~wL~v~-----~~~~~~t-~~ii~~f  305 (449)
T TIGR00400       255 -----ATEDFYMI------------AAVKPLDDSYFDTSILVMAKNRIIWLLVL-----LVSSTFT-ATIISNY  305 (449)
T ss_pred             -----hHHHHHHh------------cCCCCCcchhhhchHHHHHHhccchHHHH-----HHHHHHH-HHHHHHH
Confidence                 24688874            44555567889999999999998888774     4566666 5565544

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=2.1e-12  Score=106.69  Aligned_cols=110  Identities=16%  Similarity=0.331  Sum_probs=91.9

Q ss_pred             CceEEcCCCcHHHHHHHHHHcC-CceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  365 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  365 (438)
                      ++.++.++.++.++++.|.+++ ...++|++  +|+++|+++..|++..+....   .....++.++|..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~---~~~~~~i~~~~~~----------   66 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGK---DLSDLPIGEVMTQ----------   66 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCC---CccccCHHHhcCC----------
Confidence            5678899999999999998888 66677777  589999999999988654311   1123578899874          


Q ss_pred             CCCCeEeCCC--CCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          366 VNPPITCKLE--STLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       366 ~~~~~~v~~~--~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                        ++.++.++  +++.++++.|.+++.+.+||+|++| +++|+||++|+++
T Consensus        67 --~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~-~~~Gvit~~dl~~  114 (115)
T cd04620          67 --PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQG-QLIGLVTAESIRQ  114 (115)
T ss_pred             --CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCC-CEEEEEEhHHhhc
Confidence              77888877  7899999999999999999999887 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.44  E-value=4e-12  Score=104.01  Aligned_cols=108  Identities=31%  Similarity=0.453  Sum_probs=95.1

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+++++++||+++  ++++|+++..|+++......     ...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~-----~~~~v~~~~~~-----------   63 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL-----ELAKVKDVMTK-----------   63 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc-----cccCHHHHhcC-----------
Confidence            5788999999999999999999999999994  89999999999998754321     12578888874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+.+.+.+||+|++| +++|+||..|+++
T Consensus        64 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~  109 (110)
T cd04588          64 -DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEG-RPVGIITRTDILR  109 (110)
T ss_pred             -CceEECCCCCHHHHHHHHHhcCCCEEEEECCCC-CEEEEEEhHHhhc
Confidence             889999999999999999999999999999887 9999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.3e-12  Score=109.40  Aligned_cols=114  Identities=25%  Similarity=0.440  Sum_probs=95.9

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-----------------ccccCcH
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-----------------NFRQLTV  349 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~-----------------~~~~~~v  349 (438)
                      ++.++.+++++.++++.|.+.+++++||+|+ +++++|+++..|+...+.......                 .+...++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            5788999999999999999999999999997 789999999999988764321100                 0111277


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                      .++|..            ++..+.+++++.+++++|.+.+.+++||+|+ | +++|+||..|++++
T Consensus        81 ~~~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~-~~iGvit~~dl~~~  132 (132)
T cd04636          81 EEIMTK------------KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-G-KLVGIISRGDIIRS  132 (132)
T ss_pred             HHhccC------------CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-C-EEEEEEEHHHhhcC
Confidence            888764            7899999999999999999999999999998 6 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.44  E-value=1.4e-12  Score=111.17  Aligned_cols=113  Identities=27%  Similarity=0.424  Sum_probs=95.7

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-------------------ccccccC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-------------------FSNFRQL  347 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~-------------------~~~~~~~  347 (438)
                      ++.++.+++++.++++.|.+.++.++||+|+ +++++|+++..|+.........                   +......
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR   81 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence            6788999999999999999999999999997 7899999999999876432100                   0011235


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                      ++.++|..            ++.++.+++++.++++.|.+.+.+++||+| +| +++|+||..|+++
T Consensus        82 ~v~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g-~~~Gvit~~di~~  134 (135)
T cd04586          82 KVADVMTR------------PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GG-RLVGIVSRADLLR  134 (135)
T ss_pred             CHHHHhCC------------CceEeCCCCcHHHHHHHHHHcCCCccCEec-CC-EEEEEEEhHhhhc
Confidence            78888874            789999999999999999999999999999 66 9999999999986

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.1e-12  Score=110.55  Aligned_cols=112  Identities=21%  Similarity=0.297  Sum_probs=91.0

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh-----cCCccccccccCcHHHHhcccCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL-----LKPELFSNFRQLTVRDFMNAVVPTTP  361 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l-----~~~~~~~~~~~~~v~~~m~~~~~~~~  361 (438)
                      ++.++.+++++.++++.|.+++...+||+++ +|+++|+++..|+....     ....  ......++.++|..      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~--~~~~~~~v~~im~~------   72 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGG--ISRSELTVADVMTP------   72 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcC--CCchheEHHHhcCc------
Confidence            4678999999999999999999999999997 78999999999998521     1110  01234579999974      


Q ss_pred             CCCCCCCCe--Ee----CCCCCHHHHHHHHHhCCCCEEEEEeCC-CCeEEEEEeHHHHHH
Q 013669          362 DSGKVNPPI--TC----KLESTLGSVIHSLASKSVHRIYVVAGE-EAEVVGVITLRDVIS  414 (438)
Q Consensus       362 ~~~~~~~~~--~v----~~~~tL~ea~~~m~~~~i~~l~VVd~~-g~~lvGvIT~~DIl~  414 (438)
                            +..  .+    .+++++.++++.|.+++.+++||+|++ | +++|+||++||++
T Consensus        73 ------~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~-~~~G~it~~di~~  125 (126)
T cd04640          73 ------KEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHH-QIRGIISTSDIAR  125 (126)
T ss_pred             ------hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCC-EEEEEEeHHHHhh
Confidence                  332  23    368899999999999999999999987 6 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.44  E-value=4.7e-12  Score=103.64  Aligned_cols=107  Identities=28%  Similarity=0.450  Sum_probs=94.7

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++..+.++.++.+.|.+.+.+++||+++  ++++|+++..|+...+.. ..    ...++.++|..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~-~~----~~~~~~~~~~~-----------   64 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRH-GL----GHAPVKDYMST-----------   64 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhc-cc----ccCcHHHHhcC-----------
Confidence            6788999999999999999999999999994  899999999999887532 11    34689999974           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.+++++|.+++.+++||+| +| +++|+||..|+++
T Consensus        65 -~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-~~~Gvvt~~di~~  109 (110)
T cd04595          65 -DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DG-RLVGIVTRTDLLR  109 (110)
T ss_pred             -CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CC-EEEEEEEhHHhhc
Confidence             789999999999999999999999999999 66 9999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.44  E-value=4.9e-12  Score=103.62  Aligned_cols=109  Identities=28%  Similarity=0.440  Sum_probs=94.9

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++..++++.++.+.|.+.+++.+||++  +++++|+++..|++..+......   ...++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~--~~~~~G~v~~~~l~~~~~~~~~~---~~~~i~~~~~~-----------   65 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD--DGRLVGIVTDRDLRNRVVAEGLD---PDTPVSEVMTA-----------   65 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEE--CCEEEEEEEhHHHHHHHhccCCC---ccCCHHHHhCC-----------
Confidence            577899999999999999999999999998  48999999999998755433221   23578999874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       +++++.+++++.++++.|.+++.+++||+++ | +++|+||.+||++
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Giit~~di~~  110 (111)
T cd04800          66 -PPITIPPDATVFEALLLMLERGIHHLPVVDD-G-RLVGVISATDLLR  110 (111)
T ss_pred             -CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-C-EEEEEEEHHHhhc
Confidence             8899999999999999999999999999998 6 9999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.4e-12  Score=107.02  Aligned_cols=112  Identities=19%  Similarity=0.383  Sum_probs=94.8

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCC-CCc
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DEV  288 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~-~~v  288 (438)
                      +++++.+++++.+|++.|.++++..+||+|++ ++++|++|..|+.+......  .    +...++.+    +|.. .++
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~--~----~~~~~~~~----~~~~~~~~   70 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGA--D----LQKVPVGV----IMTRMPNI   70 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCC--C----ccCCCHHH----HhCCCCCc
Confidence            57899999999999999999999999999986 79999999999988765321  1    13445666    5652 368


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCC---CeEEEEEeHHHHHH
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~---~~lvGiIs~~Dl~~  333 (438)
                      .++.+++++.+++++|.++++..+||+|+ +   ++++|+||.+|+..
T Consensus        71 ~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          71 TTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK  117 (118)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence            89999999999999999999999999997 4   69999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=3e-12  Score=105.19  Aligned_cols=111  Identities=19%  Similarity=0.308  Sum_probs=94.6

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+++.+.++|++  +++++|+++..|++..+......  ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~G~v~~~dl~~~~~~~~~~--~~~~~v~~i~~~-----------   66 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD--GNKLVGIFTSKDIALRVVAQGLD--PESTLVERVMTP-----------   66 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE--CCEEEEEEEhHHHHHHHHhcCCC--cCcCCHHHhcCC-----------
Confidence            577889999999999999999999999998  48999999999998544332211  112578999874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++.+++||+++++ +++|+||..||+.
T Consensus        67 -~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~-~~~Gvvs~~dl~~  112 (113)
T cd04587          67 -NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSG-QVVGLLDVTKLTH  112 (113)
T ss_pred             -CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCC-CEEEEEEHHHhcc
Confidence             788999999999999999999999999999887 9999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=2.5e-12  Score=107.77  Aligned_cols=118  Identities=23%  Similarity=0.381  Sum_probs=92.4

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc-ccc--ccCCccccccCCCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF-DII--ASQPISDLGLPFMSSD  286 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~-~~l--~~~~v~~l~l~~m~~~  286 (438)
                      ++.++.+++++.+|++.|.+++++++||+|+++++++|+++..|+++++..+...... ...  ....+.+    +|.. 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-   76 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLT----IGTS-   76 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcc----cCcC-
Confidence            5788999999999999999999999999997436899999999999876543110000 000  0011112    4554 


Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.++.+++++.++++.|.+++.+.+||+|+ +++++|+||.+|+..
T Consensus        77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~~  122 (123)
T cd04627          77 DVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVRL  122 (123)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhhc
Confidence            7899999999999999999999999999997 789999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.42  E-value=6.1e-12  Score=102.91  Aligned_cols=109  Identities=25%  Similarity=0.412  Sum_probs=95.4

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+.+...+||++  +++++|+++..|++........    ...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~G~v~~~~l~~~~~~~~~----~~~~v~~~~~~-----------   64 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVD--DGRPLGIVTERDILRLLASGPD----LQTPVGEVMSS-----------   64 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEeHHHHHHHHhcCCC----CCcCHHHhcCC-----------
Confidence            567889999999999999999999999998  4899999999999887643211    24678899874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       +++++.+++++.++++.|.+.+.+.+||+|++| +++|+||.+||++
T Consensus        65 -~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~di~~  110 (111)
T cd04611          65 -PLLTVPADTSLYDARQLMREHGIRHLVVVDDDG-ELLGLLSQTDLLQ  110 (111)
T ss_pred             -CceEECCCCCHHHHHHHHHHcCCeEEEEECCCC-cEEEEEEhHHhhc
Confidence             789999999999999999999999999999887 9999999999985

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=7.1e-12  Score=102.85  Aligned_cols=110  Identities=24%  Similarity=0.468  Sum_probs=92.4

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      .+.++.+++++.++.+.|.+++...++|.+  +|+++|+++..|++..+....  ......++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~--~~~~~~~v~~~~~~-----------   66 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME--RGELVGLLTFREVLQAMAQHG--AGVLDTTVRAIMNP-----------   66 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHHHHHHHhcC--CchhcCCHHHHhCC-----------
Confidence            467889999999999999888887777776  689999999999987764211  01124579999974           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.+++++|.+++..++||+|+ | +++|+||.+||++
T Consensus        67 -~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-~-~~~Gvvt~~dl~~  111 (112)
T cd04625          67 -EPIVASPDDSIDEVRRLMVERHLRYLPVLDG-G-TLLGVISFHDVAK  111 (112)
T ss_pred             -CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC-C-EEEEEEEHHHhhc
Confidence             6889999999999999999999999999984 6 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.42  E-value=4.6e-12  Score=125.90  Aligned_cols=191  Identities=17%  Similarity=0.261  Sum_probs=145.1

Q ss_pred             CCCCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHHhhhhcccccccccccCCcccccc
Q 013669           55 GRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGAL  134 (438)
Q Consensus        55 ~~~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~  134 (438)
                      .+..++.+|+..|.+++++.+||.|.+.       +.++.+++..-|++++-......                      
T Consensus       168 ~p~~s~l~~~~~l~~~~~~rvpv~d~~~-------~~v~~ilt~~rIl~~l~~~~~~~----------------------  218 (381)
T KOG1764|consen  168 SPESSLLDAVLLLIKSRIHRVPVIDPET-------GEVLYILTQRRILKFLWLNGRLL----------------------  218 (381)
T ss_pred             cCcHHHHHHHHHHHhCCccceeeecccc-------cceeeehhHHHHHHHHHHhhccc----------------------
Confidence            3367899999999999999999999666       69999999999998854432110                      


Q ss_pred             hhhhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhccCCCCCCchhhhccccCCCCceEE
Q 013669          135 GALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPV  214 (438)
Q Consensus       135 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v  214 (438)
                                                                        .     ...+...++.|+-. ..|..+..+
T Consensus       219 --------------------------------------------------~-----~~~~l~~s~~dl~i-g~~~~i~~i  242 (381)
T KOG1764|consen  219 --------------------------------------------------P-----LPSLLSKSLSDLGI-GTWSNIASI  242 (381)
T ss_pred             --------------------------------------------------c-----cHHHhhCCHHHhCc-chhhhheee
Confidence                                                              0     01122233443322 234679999


Q ss_pred             eCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC-ccccc-cCCCCCCCceEEc
Q 013669          215 ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP-ISDLG-LPFMSSDEVITIQ  292 (438)
Q Consensus       215 ~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~-v~~l~-l~~m~~~~vv~v~  292 (438)
                      ..++++.+|+++|.+.+++.+||+|.. |+.+|+++..|+.....+.. ...+    ..+ ++... ..-.....+++|.
T Consensus       243 ~~~~~v~~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~-~~~~----~~~~l~~~~~~~~~~~~~vvtc~  316 (381)
T KOG1764|consen  243 SEDTPVIEALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGT-YNNL----DLSCLSEALSHRPIRFEGVVTCR  316 (381)
T ss_pred             cCCCcHHHHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCc-cCcc----chhHHHHHhhhcccccCccEEEe
Confidence            999999999999999999999999988 77899999999988776542 1111    111 21110 0011224689999


Q ss_pred             CCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          293 SNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       293 ~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      +++++.+++..|..++++++.|||+ +|.++|+||.+|++.++..
T Consensus       317 ~~ssL~~vi~~lv~~~vHRl~VVd~-~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  317 PTSTLAEVIDKLVAHRVHRLWVVDE-DGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             ecchHHHHHHHHHhcCceEEEEEcC-CCcEEEEeeHHHHHHHHHh
Confidence            9999999999999999999999998 8999999999999998764

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=4e-12  Score=105.88  Aligned_cols=112  Identities=29%  Similarity=0.443  Sum_probs=95.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-------ccccccCcHHHHhcccCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-------FSNFRQLTVRDFMNAVVPT  359 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~-------~~~~~~~~v~~~m~~~~~~  359 (438)
                      +++++.+++++.++.+.|.+.++.++||++  +|+++|+++..|++..+.....       ...+...++.++|..    
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~--~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   75 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIE--GGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR----   75 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEE--CCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC----
Confidence            577899999999999999999999999999  4899999999999876542110       011234578888864    


Q ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                              ++.++.+++++.+++++|.+.+.+++||+|+ | +++|+||.+|+++
T Consensus        76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~dl~~  120 (121)
T cd04633          76 --------PVITIEPDTSVSDVASLMLENNIGGLPVVDD-G-KLVGIVTRTDILR  120 (121)
T ss_pred             --------CceEECCCCcHHHHHHHHHHcCCCcccEEEC-C-EEEEEEEHHHhhc
Confidence                    7899999999999999999999999999998 7 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.41  E-value=6.4e-12  Score=102.77  Aligned_cols=109  Identities=26%  Similarity=0.447  Sum_probs=94.7

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      +++++.+++++.++++.|.+.+++.+||+++  ++++|+++..|+.........    ...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~~-----------   64 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGRE----ATVLVGDVMTR-----------   64 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcc----cccCHHHhccC-----------
Confidence            5788999999999999999999999999994  899999999999876543211    12467788874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++..++++.++++.|.+++.+++||+|+++ +++|+||..||++
T Consensus        65 -~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~  110 (111)
T cd04612          65 -DPVTASPDETLRDALKRMAERDIGRLPVVDDSG-RLVGIVSRSDLLR  110 (111)
T ss_pred             -CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCC-CEEEEEEHHHhhh
Confidence             889999999999999999999999999999887 9999999999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.41  E-value=5.4e-12  Score=104.88  Aligned_cols=113  Identities=27%  Similarity=0.430  Sum_probs=95.6

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------ccccCcHHHHhcccCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------NFRQLTVRDFMNAVVPT  359 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~-------~~~~~~v~~~m~~~~~~  359 (438)
                      ++.++.+++++.++++.|.+.+...+||+++  |+++|+++..|++..........       .....++.++|..    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   75 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR----   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC----
Confidence            5778999999999999999999999999994  89999999999988764321100       0123567888864    


Q ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                              ++.++.+++++.+++..|.+.+.+++||+|++| +++|+||..||++
T Consensus        76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvvt~~di~~  121 (122)
T cd04585          76 --------DPITVSPDASVEEAAELMLERKISGLPVVDDQG-RLVGIITESDLFR  121 (122)
T ss_pred             --------CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCC-cEEEEEEHHHhhh
Confidence                    789999999999999999999999999999887 9999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.41  E-value=1e-11  Score=126.69  Aligned_cols=114  Identities=18%  Similarity=0.297  Sum_probs=100.9

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  361 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  361 (438)
                      +|.. +++++.+++++.++++.|.+++++.++|+|  +++++|+||.+|+...  .       ...++.++|+.      
T Consensus        93 im~~-~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD--~gklvGIVT~rDL~~~--~-------~~~~V~dIMt~------  154 (475)
T TIGR01303        93 LVLD-TPITLAPHDTVSDAMALIHKRAHGAAVVIL--EDRPVGLVTDSDLLGV--D-------RFTQVRDIMST------  154 (475)
T ss_pred             cccc-CCeEECCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEEEHHHhhcC--C-------CCCCHHHHccC------
Confidence            5665 789999999999999999999999999988  5799999999998533  1       12479999985      


Q ss_pred             CCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669          362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  420 (438)
Q Consensus       362 ~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~  420 (438)
                            +++++.+++++.+|+++|.+++++++||+|+++ +++|+||.+||++.....|
T Consensus       155 ------~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g-~LvGIIT~~DLl~~~~~~~  206 (475)
T TIGR01303       155 ------DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADG-TLAGILTRTGALRATIYTP  206 (475)
T ss_pred             ------CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHHhCCc
Confidence                  899999999999999999999999999999888 9999999999999887654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.41  E-value=3.8e-12  Score=125.36  Aligned_cols=124  Identities=18%  Similarity=0.264  Sum_probs=105.5

Q ss_pred             CCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC
Q 013669          195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  274 (438)
Q Consensus       195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~  274 (438)
                      ...+|+++|...  ++++++++++++.+|++.|.+++.+.+||+|++ |+++|++|..|+.+.+....  .    +...+
T Consensus       200 ~~~~V~dim~~~--~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~--~----~~~~~  270 (326)
T PRK10892        200 LLLRVSDIMHTG--DEIPHVSKTASLRDALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGI--D----LRQAS  270 (326)
T ss_pred             ccCcHHHHhCCC--CCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCC--C----cccCC
Confidence            446799999821  279999999999999999999888888888876 89999999999987654321  1    23457


Q ss_pred             ccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669          275 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  334 (438)
Q Consensus       275 v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  334 (438)
                      +.+    +|++ ++.++.+++++.++++.|.+++++.+||++  +++++|+||.+|+++.
T Consensus       271 v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~  323 (326)
T PRK10892        271 IAD----VMTP-GGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             HHH----hcCC-CCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence            888    7887 899999999999999999999999999998  6899999999999865

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.41  E-value=9.6e-12  Score=101.96  Aligned_cols=110  Identities=24%  Similarity=0.347  Sum_probs=94.5

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++++++++.++.++++.|.+.+...++|+++  ++++|+++..|++..+.....   ....++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~---~~~~~i~~~~~~-----------   65 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGL---PSSTPVGEIATF-----------   65 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCC---CCCCCHHHHhCC-----------
Confidence            4678899999999999999999999999984  789999999999887643221   124578899874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                       ++.++.+++++.++++.|.+++.+.+||+|+ + +++|+||..|++++
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~dl~~~  111 (111)
T cd04589          66 -PLITVDPDDFLFNALLLMTRHRIHRVVVREG-G-EVVGVLEQTDLLSF  111 (111)
T ss_pred             -CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-C-EEEEEEEhHHhhcC
Confidence             7889999999999999999999999999986 5 99999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.40  E-value=3.7e-12  Score=125.21  Aligned_cols=121  Identities=20%  Similarity=0.328  Sum_probs=105.7

Q ss_pred             CCchhhhccccCCCC--ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          196 STTVRSIIKSYRWAP--FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       196 ~~~v~di~~~~~~~~--~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      ..+|+++|.    .+  ++++++++++.+|++.|.+++...+||+|++ |+++|+||..|+.+.+.....       ...
T Consensus       196 ~~~V~~im~----~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~-------~~~  263 (321)
T PRK11543        196 LNKVHHLMR----RDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGA-------LTT  263 (321)
T ss_pred             HhHHHHHhc----cCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCC-------cCC
Confidence            457999998    55  9999999999999999999899999999987 899999999999887653211       234


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  334 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  334 (438)
                      ++.+    +|.+ ++.++.+++++.++++.|.+++...+||+|+ +++++|+||.+|++.+
T Consensus       264 ~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~  318 (321)
T PRK11543        264 PVNE----AMTR-GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA  318 (321)
T ss_pred             cHHH----hcCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence            6778    7876 8899999999999999999999999999997 7899999999999865

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=9.2e-12  Score=102.27  Aligned_cols=110  Identities=26%  Similarity=0.452  Sum_probs=93.6

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  365 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~-~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  365 (438)
                      ++.++.+++++.++++.|.+++.+.+||++  +|+++|+++..|++. .+... .  .....++.++|..          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~i~~~~l~~~~~~~~-~--~~~~~~~~~~~~~----------   66 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCE--NDRLVGIVTDRDIVVRAVAEG-R--DPDTTTVGDVMTR----------   66 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEhHHHHHHHhhcc-C--CcccCCHHHhccC----------
Confidence            578899999999999999999999999998  499999999999873 33221 1  1123358899874          


Q ss_pred             CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                        .+.++.+++++.++++.|.+.+.+++||+|++| +++|+||..|+++
T Consensus        67 --~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~it~~di~~  112 (113)
T cd04622          67 --GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDG-RLVGIVSLGDLAR  112 (113)
T ss_pred             --CccEECCCCCHHHHHHHHHHcCCCeeeEECCCC-cEEEEEEHHHhhc
Confidence              788899999999999999999999999999887 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.40  E-value=5.3e-12  Score=105.62  Aligned_cols=118  Identities=21%  Similarity=0.346  Sum_probs=96.8

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccc----ccccCCccccccCCCC
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIASQPISDLGLPFMS  284 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~----~l~~~~v~~l~l~~m~  284 (438)
                      .+++++.++.++.++++.|.+++++++||++++ |+++|+++..|+.+.+..........    .....++.+    +|.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~   76 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD----IMS   76 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH----hcc
Confidence            468899999999999999999999999999987 89999999999987665321100000    012335667    676


Q ss_pred             CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       285 ~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      . ++.++.+++++.++++.|.+++.+.+||+++ +|+++|+|+..|++.
T Consensus        77 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~  123 (124)
T cd04600          77 P-PVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA  123 (124)
T ss_pred             C-CCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence            5 7899999999999999999999999999997 799999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.39  E-value=4.7e-12  Score=130.79  Aligned_cols=176  Identities=20%  Similarity=0.338  Sum_probs=132.8

Q ss_pred             hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcccc
Q 013669          199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL  278 (438)
Q Consensus       199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l  278 (438)
                      +.++|.    .+++++++++++.+++++|.+++++++||+|++ ++++|++|.+|+.....           ...++.+ 
T Consensus        89 ~~dim~----~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~DL~~~~~-----------~~~~V~d-  151 (486)
T PRK05567         89 SESGVV----TDPVTVTPDTTLAEALALMARYGISGVPVVDEN-GKLVGIITNRDVRFETD-----------LSQPVSE-  151 (486)
T ss_pred             hhhccc----CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-CEEEEEEEHHHhhhccc-----------CCCcHHH-
Confidence            566776    789999999999999999999999999999976 89999999999954211           2346788 


Q ss_pred             ccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc-cccCcHHHHhcccC
Q 013669          279 GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN-FRQLTVRDFMNAVV  357 (438)
Q Consensus       279 ~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~-~~~~~v~~~m~~~~  357 (438)
                         +|.+.+++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+||+..+..+....+ ...+.|...|.   
T Consensus       152 ---im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~---  224 (486)
T PRK05567        152 ---VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVG---  224 (486)
T ss_pred             ---HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecc---
Confidence               677337899999999999999999999999999998 8999999999999987643221000 01112223332   


Q ss_pred             CCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          358 PTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       358 ~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                                    ..+  .-.+.++.|.+.+++.+ |+|...|+..++++..+.++.
T Consensus       225 --------------~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        225 --------------VGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             --------------cCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence                          223  12788889999999855 677532388787766665554

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=8.8e-12  Score=102.86  Aligned_cols=112  Identities=16%  Similarity=0.226  Sum_probs=94.3

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++..+.+++++.++++.|.+++++.+||+|++.++++|+++..|+++.+.....     .....++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~-----~~~~~~v~~----~~~~-~~~   71 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR-----DPDRVNVYE----IMTK-PLI   71 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC-----CCCccCHHH----HhcC-CCe
Confidence            478899999999999999999999999998642699999999999986643210     012346777    6765 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++...+||++  +|+++|+|+..|++.
T Consensus        72 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~~~~Gvi~~~dl~~  113 (114)
T cd04630          72 SVSPDMDIKYCARLMERTNIRRAPVVE--NNELIGIISLTDIFL  113 (114)
T ss_pred             eECCCCCHHHHHHHHHHcCCCEeeEee--CCEEEEEEEHHHhhc
Confidence            999999999999999999999999998  489999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.39  E-value=8.3e-12  Score=102.78  Aligned_cols=109  Identities=22%  Similarity=0.352  Sum_probs=94.2

Q ss_pred             ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669          211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  290 (438)
Q Consensus       211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~  290 (438)
                      .+++.+++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+.+.+...       ...++.+    +|.. ++.+
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-------~~~~v~~----~~~~-~~~~   70 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLS-------LDDPVSE----VMNR-NPIT   70 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCC-------cCCCHHH----hhcC-CCEE
Confidence            6778999999999999999999999999987 899999999999886654311       2345777    6765 7889


Q ss_pred             EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      +.+++++.++++.|.+++.+.+||+++ +|+++|+||.+|++.
T Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~  112 (113)
T cd04607          71 AKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS  112 (113)
T ss_pred             EcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence            999999999999999999999999997 789999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.39  E-value=8.2e-12  Score=127.68  Aligned_cols=115  Identities=29%  Similarity=0.438  Sum_probs=101.5

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC---CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVP  358 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~---~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~  358 (438)
                      .|.+ +++++.+++++.++++.|.+++++++||+|+ +   ++++|+|+.+|++....        ...++.++|..   
T Consensus        85 ~~~~-~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~-~~~~~~lvGIVt~rDL~~~~~--------~~~~V~dvm~~---  151 (450)
T TIGR01302        85 GIIS-DPVTISPETTVADVLELMERKGISGIPVVED-GDMTGKLVGIITKRDIRFVKD--------KGKPVSEVMTR---  151 (450)
T ss_pred             ceec-CceEeCCCCCHHHHHHHHHHcCCCEEEEEeC-CCCCCeEEEEEEHHHHhhhhc--------CCCCHHHhhCC---
Confidence            4555 7899999999999999999999999999997 5   79999999999975421        24579999972   


Q ss_pred             CCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          359 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       359 ~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                              .+++++.+++++.++++.|.+++.+.+||+|++| +++|+||++||++.+..
T Consensus       152 --------~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G-~lvGiVT~~DIl~~~~~  202 (450)
T TIGR01302       152 --------EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNG-ELVGLITMKDIVKRRKF  202 (450)
T ss_pred             --------CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEhHHhhhcccC
Confidence                    2789999999999999999999999999999998 99999999999998753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.38  E-value=5.9e-12  Score=102.80  Aligned_cols=106  Identities=26%  Similarity=0.450  Sum_probs=91.7

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++..++++.++.+.|.+++...+||+++ +|+++|+++..|++....        ...++.++|..           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~--------~~~~v~~~~~~-----------   62 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFETD--------LDKPVSEVMTP-----------   62 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeeccc--------CCCCHHHhccc-----------
Confidence            5788899999999999999999999999997 799999999999864311        13578899874           


Q ss_pred             CCCeEeCC-CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKL-ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~-~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       .+..+.. ++++.++++.|.+.+.+++||+|++| +++|+||.+|+++
T Consensus        63 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvi~~~dil~  109 (110)
T cd04601          63 -ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEG-KLKGLITVKDIEK  109 (110)
T ss_pred             -CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCC-CEEEEEEhhhhhc
Confidence             5566666 99999999999999999999999887 9999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>PRK11573 hypothetical protein; Provisional

Probab=99.38  E-value=1.1e-11  Score=125.10  Aligned_cols=135  Identities=12%  Similarity=0.213  Sum_probs=113.0

Q ss_pred             cccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013669          270 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT  348 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~  348 (438)
                      +.+.++++    +|++ .+++.++.++++.++++.+.+++++++||+++..+.++|++..+|++..+.+...   .....
T Consensus       184 l~~~~v~e----iMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~---~~~~~  256 (413)
T PRK11573        184 LEKVTVDD----IMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---FTKEN  256 (413)
T ss_pred             cCCCChhh----cCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc---CCHHH
Confidence            35778999    7876 4789999999999999999999999999998645899999999999876432111   11112


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCccc
Q 013669          349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  425 (438)
Q Consensus       349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~  425 (438)
                      +.++++             ++.+++++.++.++++.|.+++.|-..|+|+.| ...|+||..||++.+++|..+.|+
T Consensus       257 l~~~~r-------------~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG-~~~GiVTleDilEeivGei~de~d  319 (413)
T PRK11573        257 MLRAAD-------------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIVGDFTTSMS  319 (413)
T ss_pred             HHhhcc-------------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCC-CeEEEeeHHHHHHHHhCCCCcccC
Confidence            334443             889999999999999999999999999999998 999999999999999988777655

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.38  E-value=1.2e-11  Score=100.20  Aligned_cols=103  Identities=30%  Similarity=0.429  Sum_probs=91.5

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+++...+||+|  +++++|+++..|+....         ...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~Giv~~~~l~~~~---------~~~~~~~~~~~-----------   59 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE--DGKLVGIITSRDVRRAH---------PNRLVADAMTR-----------   59 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEehHHhhccc---------ccCCHHHHccC-----------
Confidence            567889999999999999999999999998  58999999999997642         13468888874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++..++||+|+ | +++|+||..|++.
T Consensus        60 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~G~it~~~l~~  104 (105)
T cd04599          60 -EVVTISPEASLLEAKRLMEEKKIERLPVLRE-R-KLVGIITKGTIAL  104 (105)
T ss_pred             -CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-C-EEEEEEEHHHhcc
Confidence             7899999999999999999999999999998 6 9999999999973

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.38  E-value=4.7e-12  Score=103.61  Aligned_cols=103  Identities=26%  Similarity=0.369  Sum_probs=89.2

Q ss_pred             EcCCCcHHHHHHHHHHcC-----CceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669          291 IQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  365 (438)
Q Consensus       291 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  365 (438)
                      +.+++++.++++.|.+++     +..+||+|+ +++++|+++.+|++..  .       ...++.+++..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~--~-------~~~~v~~~~~~----------   61 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLA--D-------PDTPVSDIMDT----------   61 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcC--C-------CcchHHHHhCC----------
Confidence            567899999999998877     478999987 7899999999999752  1       13468898874          


Q ss_pred             CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                        ++.++.+++++.++++.|.+.+.+++||+|++| +++|+||..|+++.+
T Consensus        62 --~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-~~~Gvit~~dll~~~  109 (109)
T cd04606          62 --DVISVSADDDQEEVARLFEKYDLLALPVVDEEG-RLVGIITVDDVIDVI  109 (109)
T ss_pred             --CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCC-cEEEEEEhHHhhhhC
Confidence              789999999999999999999999999999887 999999999999753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.38  E-value=1.1e-11  Score=101.38  Aligned_cols=108  Identities=21%  Similarity=0.442  Sum_probs=94.3

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      ++++++.+++++.++++.|.+++...+||+|++ |+++|+++..|+++.+...          ..++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~----------~~~~~~----~~~~-~~   65 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARD----------KKSVED----IMTR-NV   65 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhC----------ccCHHH----hcCC-CC
Confidence            568899999999999999999999999999987 8999999999998766532          123666    5665 78


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.+++++.++++.|.+++...+||+++ +|+++|+++..|++.
T Consensus        66 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~  109 (110)
T cd04605          66 ITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK  109 (110)
T ss_pred             eEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence            89999999999999999999999999997 789999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.3e-11  Score=101.14  Aligned_cols=111  Identities=23%  Similarity=0.402  Sum_probs=94.6

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++..+.++.++.++++.|.+++++++||+|++ ++++|+++..|+++.+..... .    ....++.+    +|.. ++.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~-~----~~~~~~~~----~~~~-~~~   70 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGA-S----ALDTPVSE----IMTR-NVI   70 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCC-C----ccccCHHH----hcCC-CcE
Confidence            46788999999999999999999999999987 799999999999987754311 0    12346777    6766 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+.+.+.+||++  +++++|+|+.+|++.
T Consensus        71 ~v~~~~~~~~~l~~~~~~~~~~~~Vv~--~~~~~Gvit~~di~~  112 (113)
T cd04623          71 TVTPDDTVDEAMALMTERRFRHLPVVD--GGKLVGIVSIGDVVK  112 (113)
T ss_pred             EECCCCcHHHHHHHHHHcCCCEeEEEe--CCEEEEEEEHHHhhc
Confidence            999999999999999999999999998  489999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=6.1e-12  Score=103.07  Aligned_cols=109  Identities=16%  Similarity=0.348  Sum_probs=94.5

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      +++++.+++++.++++.|.+.+...+||+|++ ++++|+++..|+.+++....        ...++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~~-~~~   67 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGG--------PDAPVRG----VMRR-DFP   67 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcC--------CCCcHHH----HhcC-CCc
Confidence            46789999999999999988889999999986 89999999999998775431        2246777    6765 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++...+||+++ +++++|++|.+|+..
T Consensus        68 ~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~  110 (111)
T cd04639          68 TVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE  110 (111)
T ss_pred             EECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence            9999999999999999999999999986 689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.38  E-value=5.3e-12  Score=133.56  Aligned_cols=127  Identities=15%  Similarity=0.253  Sum_probs=108.6

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      ...++++    +|++ ++.++++++++.++.+.|.+++.+.+||+|+ +++++|+++.+|+.+.+.+...   ....++.
T Consensus       445 ~~~~V~d----im~~-~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~---~~~~~v~  515 (574)
T PRK01862        445 RTTQMRE----LIQP-AQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRD---TTDKTAA  515 (574)
T ss_pred             hhCcHHH----HhcC-CCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccc---cccchHH
Confidence            4567888    7876 7889999999999999999999999999997 8999999999999886533221   1235789


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCC-CeEEEEEeHHHHHHHhhc
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE-AEVVGVITLRDVISCFIF  418 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g-~~lvGvIT~~DIl~~l~~  418 (438)
                      ++|..            ++.++++++++.+++++|.+++.+++||+|+++ ++++|+||++|+++.+..
T Consensus       516 dim~~------------~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        516 DYAHT------------PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             HhccC------------CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            99974            788999999999999999999999999999863 389999999999998764

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.4e-11  Score=101.06  Aligned_cols=110  Identities=26%  Similarity=0.449  Sum_probs=95.2

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++..+.+++++.++++.|.++++..+||+|++ ++++|+++..|+++.+.....       ...++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~-------~~~~v~~----~~~~-~~~   68 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID-------LDTPVSE----IMTR-DLV   68 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC-------CccCHHH----hccC-CCE
Confidence            46789999999999999999999999999987 899999999999887764321       2346777    6766 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++...+||+++ +|+++|++|.+|+++
T Consensus        69 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~  111 (112)
T cd04624          69 TVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR  111 (112)
T ss_pred             EECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence            9999999999999999999999999997 799999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.37  E-value=5.3e-12  Score=104.10  Aligned_cols=110  Identities=15%  Similarity=0.208  Sum_probs=92.0

Q ss_pred             CceEEeCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCC-CC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-DE  287 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~-i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~-~~  287 (438)
                      ++.++++++++.+|++.|.+++ .+.+||+|++ ++++|+++..|+++......        ...++.+    +|.+ .+
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~--------~~~~v~~----~~~~~~~   68 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQW--------AQTTVIQ----VMTPAAK   68 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhc--------cccchhh----hhccccc
Confidence            4788999999999999997775 8899999976 89999999999988664221        2346677    5653 24


Q ss_pred             ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       288 vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      +.++.+++++.++++.|.+++.+.+||+++ +++++|+++.+|++.
T Consensus        69 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~  113 (114)
T cd04801          69 LVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR  113 (114)
T ss_pred             ceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence            678999999999999999999999999996 689999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.37  E-value=1.3e-11  Score=126.03  Aligned_cols=178  Identities=16%  Similarity=0.206  Sum_probs=131.6

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      +...++.++|.    .+++++.+++++.+++++|.+++++.+||+|++ ++++|+||..|+...       .     ...
T Consensus        86 l~~VKv~~iMi----~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~-------~-----~~~  148 (479)
T PRK07807         86 VAWVKSRDLVF----DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGV-------D-----RFT  148 (479)
T ss_pred             Hhhcccccccc----cCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcC-------c-----cCC
Confidence            33455677887    779999999999999999999999999999976 899999999998421       1     124


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  353 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m  353 (438)
                      ++.+    +|+. +++++.+++++.++++.|.++++..+||+|+ +++++|+||.+||+.....+.....-....|... 
T Consensus       149 ~V~d----iMt~-~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aa-  221 (479)
T PRK07807        149 QVRD----VMST-DLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAA-  221 (479)
T ss_pred             CHHH----hccC-CceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhCCchhhhhhccchHhh-
Confidence            6888    7886 8999999999999999999999999999997 7899999999999998654322111111112222 


Q ss_pred             cccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          354 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                                      +.+  .....+.++.|.+.++..+ ++|-..|+   -....+.++.+.
T Consensus       222 ----------------v~~--~~~~~~~a~~Lv~aGvd~i-~~D~a~~~---~~~~~~~i~~ik  263 (479)
T PRK07807        222 ----------------VGI--NGDVAAKARALLEAGVDVL-VVDTAHGH---QEKMLEALRAVR  263 (479)
T ss_pred             ----------------hcc--ChhHHHHHHHHHHhCCCEE-EEeccCCc---cHHHHHHHHHHH
Confidence                            222  2346788888888888774 66744424   233344555444

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.37  E-value=1.2e-11  Score=102.07  Aligned_cols=107  Identities=20%  Similarity=0.305  Sum_probs=91.0

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  364 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  364 (438)
                      ++.++.+++++.++++.|.+++...+||+|+.  +|+++|+++..|++....        ...++.++|..         
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~--------~~~~v~~~~~~---------   65 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD--------SETPLSEVMTP---------   65 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc--------cCCCHHHhcCC---------
Confidence            56788999999999999999999999999842  489999999999875421        12468899974         


Q ss_pred             CCCCCeEeCC--CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          365 KVNPPITCKL--ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       365 ~~~~~~~v~~--~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                         ++.++..  ++++.++++.|.+++.+++||+|++| +++|+||.+||++
T Consensus        66 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~-~~~Gvit~~di~~  113 (114)
T cd04602          66 ---REVLVVAPTGITLEEANEILRESKKGKLPIVNDDG-ELVALVTRSDLKK  113 (114)
T ss_pred             ---CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCC-eEEEEEEHHHhhc
Confidence               5666655  99999999999999999999999888 9999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1e-11  Score=103.65  Aligned_cols=114  Identities=20%  Similarity=0.290  Sum_probs=94.9

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-----ccc--cccCcHHHHhcccCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-----FSN--FRQLTVRDFMNAVVPT  359 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~-----~~~--~~~~~v~~~m~~~~~~  359 (438)
                      ++.++.+++++.++++.|.+.+++++||++  +|+++|+++..|+...+.....     ...  ....++.++|..    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   75 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE--DNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR----   75 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEe--CCeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC----
Confidence            578899999999999999999999999999  4899999999999876542100     000  012367888864    


Q ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                              +++++.+++++.++++.|.+++..++||+|+++ +++|++|+.|++++
T Consensus        76 --------~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~-~~~Gvit~~dll~~  122 (122)
T cd04637          76 --------DPITVSPDTPVDEASKLLLENSISCLPVVDENG-QLIGIITWKDLLKY  122 (122)
T ss_pred             --------CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCC-CEEEEEEHHHhhhC
Confidence                    789999999999999999999999999999887 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=8.6e-12  Score=102.97  Aligned_cols=114  Identities=20%  Similarity=0.326  Sum_probs=93.2

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      +++++++++++.++++.|.+++++.+||+|++ ++++|+++..|+.+++.......+ ..+...++.+    +|.+ ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~-~~~~~~~v~~----~~~~-~~~   74 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDL-ERLVDLKVID----VMNT-DVP   74 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhH-HHHhCCcHHH----HhcC-CCc
Confidence            47889999999999999999999999999976 899999999999987754321110 0011456777    6776 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+.+  .+||+++ +++++|++|.+|++.
T Consensus        75 ~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~  115 (116)
T cd04643          75 VIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILK  115 (116)
T ss_pred             eecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhc
Confidence            9999999999999998765  5899987 799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=2.3e-11  Score=99.82  Aligned_cols=110  Identities=31%  Similarity=0.515  Sum_probs=93.9

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++++.|.+.+.+.+||+++  ++++|+++..|++..+.....  .....++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~--~~~~~~~~~~~~~-----------   66 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNL--KPREVPVGEVMST-----------   66 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccC--CcccCCHHHhcCC-----------
Confidence            5778899999999999999999999999995  599999999999986543221  1124578899874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++.+.+||+|+ + +++|+||..|+++
T Consensus        67 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~  111 (112)
T cd04802          67 -PLITIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM  111 (112)
T ss_pred             -CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence             7889999999999999999999999999986 4 8999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.37  E-value=1.6e-11  Score=100.11  Aligned_cols=109  Identities=23%  Similarity=0.446  Sum_probs=91.8

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++.+++++.++.+.|.+++++.+||+++  ++++|+++..|+...+.....  . ...++.++|..           
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~--~-~~~~~~~~~~~-----------   65 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKA--K-FSLPVREVMGE-----------   65 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhcccc--c-cCcCHHHHhcC-----------
Confidence            4678899999999999999999999999994  899999999999988653221  1 13578899874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                       ++.++.+++++.+++++|.+ . +.+||++++| +++|+||++||+++
T Consensus        66 -~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~-~~~Gvvt~~di~~~  110 (110)
T cd04609          66 -PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGG-KFVGIITRADLLKY  110 (110)
T ss_pred             -CCceeCCCCcHHHHHHHHHh-C-CceeEEecCC-eEEEEEeHHHhhcC
Confidence             78899999999999999988 3 4578999887 99999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.36  E-value=1.6e-11  Score=102.10  Aligned_cols=113  Identities=27%  Similarity=0.405  Sum_probs=95.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc--cc----cccccCcHHHHhcccCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE--LF----SNFRQLTVRDFMNAVVPTT  360 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~--~~----~~~~~~~v~~~m~~~~~~~  360 (438)
                      ++.++++++++.++.+.|.+.+++++||+|+ +++++|+++..|+........  ..    ......++.++|..     
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----   75 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK-----   75 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC-----
Confidence            5778899999999999999999999999997 799999999999987543110  00    01234578899874     


Q ss_pred             CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                             +++++..++++.++++.|.+++.+++||+|+ + +++|++|..||++
T Consensus        76 -------~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~-~~~Gvv~~~di~~  120 (121)
T cd04584          76 -------DVITVHPLDTVEEAALLMREHRIGCLPVVED-G-RLVGIITETDLLR  120 (121)
T ss_pred             -------CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-C-EEEEEEEHHHhhc
Confidence                   7899999999999999999999999999987 6 9999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.36  E-value=1.6e-11  Score=101.35  Aligned_cols=111  Identities=14%  Similarity=0.270  Sum_probs=94.3

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++.++.+++++.++++.|.+.+++.+||+|++ ++++|+++..|+.+.+.....      ....++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~------~~~~~~~~----~~~~-~~~   69 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEA------GEPSAVDE----VATP-PLL   69 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccc------cccccHHH----hccC-Cce
Confidence            46788999999999999999999999999987 899999999999887653210      02234666    6665 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCC--CeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQ--KKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~--~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.+++++|.+++...+||+++ +  |+++|+||.+|++.
T Consensus        70 ~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~  114 (115)
T cd04593          70 TVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLL  114 (115)
T ss_pred             EECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhc
Confidence            9999999999999999999999999986 5  79999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.6e-11  Score=102.43  Aligned_cols=117  Identities=22%  Similarity=0.414  Sum_probs=96.2

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc---cccccCCccccccCCCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF---DIIASQPISDLGLPFMSSD  286 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~---~~l~~~~v~~l~l~~m~~~  286 (438)
                      +++++.+++++.++++.|.+.+++.+||++++ ++++|+++..|+.+.+.........   ......++.+    +|.. 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~-   75 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE----VMKT-   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----hhCC-
Confidence            57889999999999999999999999999987 8999999999999876543211100   0113446667    6665 


Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.++.+++++.++++.|.+.+...+||+++ +|+++|++|..|++.
T Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~  121 (122)
T cd04803          76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR  121 (122)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence            7899999999999999999999999999996 689999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.4e-11  Score=103.71  Aligned_cols=117  Identities=16%  Similarity=0.279  Sum_probs=91.7

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccc-----ccc--CCccccccCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI-----IAS--QPISDLGLPF  282 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~-----l~~--~~v~~l~l~~  282 (438)
                      .++++++++++.++++.|.++++..+||+|++ ++++|+++..|+.+.............     +..  ....+    .
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   76 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDG----V   76 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccc----c
Confidence            37889999999999999999999999999987 899999999999887643211000000     000  01112    3


Q ss_pred             CCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       283 m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      |.. ++.++.+++++.++++.|.+++.+.+||+++ +++++|+||..|++.
T Consensus        77 ~~~-~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~  125 (126)
T cd04642          77 KSR-PLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS  125 (126)
T ss_pred             ccC-CCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence            444 7899999999999999999999999999997 789999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.35  E-value=1.6e-11  Score=126.82  Aligned_cols=115  Identities=24%  Similarity=0.373  Sum_probs=102.1

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  361 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  361 (438)
                      +|.. +++++.+++++.++++.|.+++++++||+|+ +++++|+|+.+|+.....        ...++.++|..      
T Consensus        92 im~~-~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~~--------~~~~V~dim~~------  155 (486)
T PRK05567         92 GVVT-DPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFETD--------LSQPVSEVMTK------  155 (486)
T ss_pred             cccC-CCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhccc--------CCCcHHHHcCC------
Confidence            5665 8999999999999999999999999999997 899999999999965321        23579999972      


Q ss_pred             CCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       362 ~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                           ++++++.+++++.++++.|.+++++.+||+|++| +++|+||.+||++.+..
T Consensus       156 -----~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g-~lvGiIT~~DLl~~~~~  206 (486)
T PRK05567        156 -----ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNG-RLKGLITVKDIEKAEEF  206 (486)
T ss_pred             -----CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEhHHhhhhhhC
Confidence                 2889999999999999999999999999999998 99999999999998753

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.35  E-value=1.4e-11  Score=126.75  Aligned_cols=116  Identities=17%  Similarity=0.180  Sum_probs=101.1

Q ss_pred             CCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCC
Q 013669          283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTT  360 (438)
Q Consensus       283 m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~  360 (438)
                      |.+ +++++++++++.++++.|.+++++.+||+|+.  +++++|+||.+|+....        ..+.+|.++|++.    
T Consensus       106 mi~-dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--------~~~~~V~eIMt~~----  172 (505)
T PLN02274        106 FVS-DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--------DRETKLSEVMTSD----  172 (505)
T ss_pred             ccC-CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--------ccCCcHHHHhccC----
Confidence            444 78999999999999999999999999999852  27999999999997542        1256899999840    


Q ss_pred             CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                            .+++++.+++++.+|++.|.+++++++||||+++ +++|+||++||++.+..
T Consensus       173 ------~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g-~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        173 ------DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDG-ELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             ------CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEHHHHHHHhhC
Confidence                  1378999999999999999999999999999988 99999999999998875

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.35  E-value=5e-12  Score=106.41  Aligned_cols=113  Identities=15%  Similarity=0.212  Sum_probs=94.9

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      .+++++.++.++.++++.|.++++.++||+|++ ++++|+++..|+++.+.... ..     ...++.+    +|.+ ++
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~-~~-----~~~~v~~----im~~-~~   69 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGK-VQ-----PSDPVSK----ALYK-QF   69 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhc-cC-----CCCcHHH----Hhhc-cc
Confidence            468899999999999999999999999999987 89999999999987665431 11     3568899    7887 89


Q ss_pred             eEEcCCCcHHHHHHHHH---------HcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669          289 ITIQSNELILEAFKRMK---------DNNIGGIPVVEGQQKKIVGNVSIRDIRHL  334 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~---------~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  334 (438)
                      .++.+++++.++.++|.         +.+...+||+++ +|+++|+||.+|++.+
T Consensus        70 ~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~  123 (124)
T cd04608          70 KRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSY  123 (124)
T ss_pred             eecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhh
Confidence            99999999999998653         335677888886 7999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.35  E-value=2e-11  Score=99.18  Aligned_cols=104  Identities=28%  Similarity=0.433  Sum_probs=92.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      +++++..+.++.++++.|.+.+...+||++  +++++|+++..|++..  .       ...++.++|..           
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~g~v~~~~l~~~--~-------~~~~~~~~~~~-----------   60 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVD--NGKVVGIVSARDLLGK--D-------PDETVEEIMSK-----------   60 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeE--CCEEEEEEEHHHhhcc--C-------ccccHHHhCCC-----------
Confidence            678899999999999999988888999998  4899999999999753  1       13468899874           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+++.+++||+|++| +++|+|+..||++
T Consensus        61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g-~~~Gvi~~~di~~  106 (107)
T cd04610          61 -DLVVAVPEMDIMDAARVMFRTGISKLPVVDENN-NLVGIITNTDVIR  106 (107)
T ss_pred             -CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCC-eEEEEEEHHHhhc
Confidence             788999999999999999999999999999987 9999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.34  E-value=2.6e-11  Score=98.41  Aligned_cols=100  Identities=23%  Similarity=0.345  Sum_probs=88.0

Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCC
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNP  368 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~  368 (438)
                      +++.+++++.++++.|.+.+.+.+||+++  ++++|+++..|++...          ..++.++|..            +
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~----------~~~~~~~~~~------------~   59 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT----------YGDVVDYIVR------------G   59 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc----------ccchhhhhhc------------C
Confidence            56889999999999999999999999994  8999999999997641          1246777764            6


Q ss_pred             CeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          369 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       369 ~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                      +.++.+++++.++++.|.+++...+||+| +| +++|+||.+|+++
T Consensus        60 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~-~~iGvit~~dl~~  103 (104)
T cd04594          60 IPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DG-KFKGIVTLDSILD  103 (104)
T ss_pred             CcEEcCCCCHHHHHHHHHHcCcceEEEEE-CC-EEEEEEEHHHhhc
Confidence            78999999999999999999999999998 46 9999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2.8e-11  Score=104.43  Aligned_cols=112  Identities=30%  Similarity=0.493  Sum_probs=94.1

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc-----------------------
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN-----------------------  343 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~-----------------------  343 (438)
                      +++++.+++++.++++.|.+.+++.+||+++  ++++|+++..|++..+........                       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET   79 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence            5788999999999999999999999999994  899999999999887643221000                       


Q ss_pred             ------cccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          344 ------FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       344 ------~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                            ....++.++|..            ++.++..++++.+++..|.+.+.+++||+++ + +++|+||..|+++
T Consensus        80 ~~~~~~~~~~~v~~~~~~------------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~-~~~Gvvt~~dl~~  142 (143)
T cd04634          80 KRALTDAGKMKVRDIMTK------------KVITISPDASIEDAAELMVRHKIKRLPVVED-G-RLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHhcCCHHHHcCC------------CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHhhc
Confidence                  123467777763            7899999999999999999999999999998 6 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2.3e-11  Score=99.96  Aligned_cols=110  Identities=24%  Similarity=0.297  Sum_probs=94.2

Q ss_pred             ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669          211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  290 (438)
Q Consensus       211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~  290 (438)
                      +..+.+++++.++++.|.+.+.+.+||+|++ ++++|+++..|+.+.+....      .+...++.+    +|.. ++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~------~~~~~~i~~----~~~~-~~~~   70 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESE------ELKDAKVRE----VMNS-PVIT   70 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhh------hhcCCcHHH----hccC-CceE
Confidence            6788999999999999999999999999986 89999999999987544321      113456777    6766 7899


Q ss_pred             EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      +.+++++.++++.|.+++...+||+++ +|+++|+++..|++.
T Consensus        71 v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~  112 (113)
T cd04615          71 IDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR  112 (113)
T ss_pred             ECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence            999999999999999999999999987 789999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.34  E-value=2.9e-11  Score=98.52  Aligned_cols=106  Identities=13%  Similarity=0.304  Sum_probs=92.7

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++..+.++.++.++++.|.++++.++||+|++ ++++|+++..|+.+....           ..++.+    +|.. ++.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~-----------~~~v~~----~~~~-~~~   65 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE-----------AKSLED----IMLE-DVF   65 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-----------CCcHhH----hhcC-Cce
Confidence            47789999999999999999999999999986 899999999999875421           235666    6765 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.+++..|.+.+...+||+++ +|+++|++|.+|++.
T Consensus        66 ~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~  108 (109)
T cd04583          66 TVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD  108 (109)
T ss_pred             EECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence            9999999999999999999999999997 789999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=2.3e-11  Score=99.64  Aligned_cols=109  Identities=22%  Similarity=0.362  Sum_probs=93.3

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++..+++++++.++++.|.+++++.+||+|++ |+++|+++..|+.++.....       ....++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~-------~~~~~v~~----~~~~-~~~   68 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFES-------FLEKKVFN----IVSQ-DVF   68 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcc-------cccCcHHH----HhcC-CcE
Confidence            47789999999999999999999999999986 89999999999987654321       02346777    6765 788


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++...+||++  +|+++|+||..|++.
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~di~~  110 (111)
T cd04626          69 YVNEEDTIDEALDIMREKQIGRLPVVD--DNKLIGVVRTKDILD  110 (111)
T ss_pred             EEcCCCcHHHHHHHHHHcCCCeeeEeE--CCEEEEEEEhHHhcc
Confidence            999999999999999999999999998  489999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.6e-11  Score=102.82  Aligned_cols=118  Identities=25%  Similarity=0.442  Sum_probs=95.8

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc-----ccccccCCccccccCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-----FDIIASQPISDLGLPFMS  284 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~-----~~~l~~~~v~~l~l~~m~  284 (438)
                      ++.++.++.++.+++++|.+++...+||+|+++++++|+++..|+.+++........     .......++.+    +|.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   77 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS----IMT   77 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH----Hhc
Confidence            477889999999999999999999999998754799999999999987754311100     00112345667    566


Q ss_pred             CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       285 ~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      . ++.++.+++++.++++.|.+.+...+||+++ +|+++|+||..|+++
T Consensus        78 ~-~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~  124 (125)
T cd04631          78 R-NVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK  124 (125)
T ss_pred             C-CceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence            5 7999999999999999999999999999986 689999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.34  E-value=4e-11  Score=98.97  Aligned_cols=112  Identities=29%  Similarity=0.545  Sum_probs=97.1

Q ss_pred             CCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCC
Q 013669          283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPD  362 (438)
Q Consensus       283 m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~  362 (438)
                      |.+ .++++.++.++.++...|.++++..+||++  .++++|++|.+|++..+.....    ...++.++|..       
T Consensus         5 ~~~-~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~--~~~l~Giit~~di~~~~~~~~~----~~~~v~~v~~~-------   70 (117)
T COG0517           5 MTK-DVITVKPDTSVRDALLLMSENGVSAVPVVD--DGKLVGIITERDILRALAAGGK----RLLPVKEVMTK-------   70 (117)
T ss_pred             ccC-CCEEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHhccCC----ccccHHHhccC-------
Confidence            444 789999999999999999999999999998  4589999999999999764322    11168899984       


Q ss_pred             CCCCCCCeEeCCCCCHHHHHHHHHh-CCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013669          363 SGKVNPPITCKLESTLGSVIHSLAS-KSVHRIYVVAGEEAEVVGVITLRDVI  413 (438)
Q Consensus       363 ~~~~~~~~~v~~~~tL~ea~~~m~~-~~i~~l~VVd~~g~~lvGvIT~~DIl  413 (438)
                           +++++.+++++.++++.|.+ ++++++||+|+++++++|++|.+|++
T Consensus        71 -----~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          71 -----PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             -----CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                 88999999999999999999 79999999998722999999999974

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=3.3e-11  Score=103.02  Aligned_cols=116  Identities=25%  Similarity=0.329  Sum_probs=95.0

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc-----------------cccccc
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-----------------FDIIAS  272 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~-----------------~~~l~~  272 (438)
                      ++.++.+++++.+|++.|.+++...+||+|++ ++++|+++..|+++.+........                 ......
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence            36788999999999999999999999999987 899999999999987753211100                 000123


Q ss_pred             CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.+    +|.. ++..+.+++++.++++.|.+++...+||++  +|+++|+||.+|++.
T Consensus        81 ~~v~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAED----IMTE-EIITVSPNDDVVDAAKLMLEANISGLPVVD--NDNIVGVITKTDICR  134 (135)
T ss_pred             ccHHH----hcCC-CCeEECCCCCHHHHHHHHHHcCCCEEEEEe--CCEEEEEEEHHHHhh
Confidence            46777    6765 788999999999999999999999999998  489999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.33  E-value=2.1e-11  Score=124.82  Aligned_cols=122  Identities=19%  Similarity=0.267  Sum_probs=106.1

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHH-----cCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD-----NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  345 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~  345 (438)
                      ...++++    +|++ ++++++++.++.++++.|.+     ++...++|+|+ +++++|+++.+|++..  .       .
T Consensus       129 ~e~tvg~----iMt~-~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a--~-------~  193 (449)
T TIGR00400       129 SDDSAGR----IMTI-EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILA--K-------P  193 (449)
T ss_pred             CcchHHH----hCcC-ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcC--C-------C
Confidence            5568888    7987 89999999999999999986     45667888987 7999999999998643  1       2


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669          346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  420 (438)
Q Consensus       346 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~  420 (438)
                      +.++.++|.+            +++++++++++.+|++.|.+++...+||||++| +++|+||.+|+++.+..+.
T Consensus       194 ~~~v~~im~~------------~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g-~lvGiIt~~Dil~~l~~~~  255 (449)
T TIGR00400       194 EEILSSIMRS------------SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEG-RLVGIVTVDDIIDVIQSEA  255 (449)
T ss_pred             CCcHHHHhCC------------CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCC-eEEEEEEHHHHHHHHHhhh
Confidence            3479999985            788999999999999999999999999999998 9999999999999887644

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.9e-11  Score=97.94  Aligned_cols=94  Identities=19%  Similarity=0.384  Sum_probs=84.3

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      +++.+.+++++.+|++.|.+++++.+||+|++ ++++|+++..|+.+..                            .+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~----------------------------~~~   52 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS----------------------------EVV   52 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC----------------------------CcE
Confidence            47889999999999999999999999999976 8999999999985410                            267


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++.+.+||+++ +|+++|++|.+|++.
T Consensus        53 ~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~   95 (96)
T cd04614          53 TATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLK   95 (96)
T ss_pred             EecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            8899999999999999999999999996 689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.33  E-value=3.7e-11  Score=97.51  Aligned_cols=104  Identities=18%  Similarity=0.305  Sum_probs=90.2

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++.+++++.++.+|++.|.+++.+.+||+|++ |+++|++|..|+.+...             .++.+    +|.+ .+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~-------------~~~~~----~~~~-~~~   62 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG-------------GCCGD----HAEP-FKV   62 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc-------------cchhh----hccc-CCE
Confidence            46788999999999999999999999999876 89999999999976421             23556    6665 678


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .+.+++++.++++.|.+++...+||+++ +++++|+|+.+|++.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~  105 (106)
T cd04582          63 TVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD  105 (106)
T ss_pred             EECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            8999999999999999999999999997 789999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.33  E-value=1.1e-11  Score=116.99  Aligned_cols=118  Identities=21%  Similarity=0.397  Sum_probs=106.4

Q ss_pred             CCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013669          273 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  351 (438)
Q Consensus       273 ~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~  351 (438)
                      ..+.+    +|.| .+..++.+++++.+..++..+.+.+++||+|. ..+++|++|.+|+....         .+.++..
T Consensus       188 ~~Ved----i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~---------~~t~ieK  253 (432)
T COG4109         188 ITVED----IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKK---------PSTTIEK  253 (432)
T ss_pred             eeHHH----hccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCC---------CCccHHH
Confidence            45677    6664 36788999999999999999999999999998 89999999999997662         2568999


Q ss_pred             HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          352 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       352 ~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                      +|++            +|+++.+.+++..+.++|.-.++.-+||+|++. +++|+||++|+++.+.
T Consensus       254 VMtk------------np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~-~llGiitR~dvlk~lq  306 (432)
T COG4109         254 VMTK------------NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNN-TLLGIITRQDVLKSLQ  306 (432)
T ss_pred             Hhcc------------CCeeecccchHHHHHHHHHhccceeeeEEcCCc-eEEEEEEHHHHHHHHH
Confidence            9995            899999999999999999999999999999998 9999999999999885

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.7e-11  Score=100.89  Aligned_cols=112  Identities=20%  Similarity=0.363  Sum_probs=94.1

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++.++.+++++.++++.|.+++++.+||+|++ ++++|+++..|+++.+....    .......++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~----~~~~~~~~v~~----~~~~-~~~   71 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESS----YHCDGVATVRD----IMTT-EVL   71 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhh----hccCCCccHHH----Hhcc-Cce
Confidence            47789999999999999998899999999987 89999999999988664321    00012456777    6766 788


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++...+||++  +|+++|++|.+|++.
T Consensus        72 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Gvit~~di~~  113 (114)
T cd04629          72 TVSPDDSIVDLAQLMLKAKPKRYPVVD--DGKLVGQISRRDVLR  113 (114)
T ss_pred             EECCCCcHHHHHHHHHHhCCCccCEEE--CCEEEEEEEHHHHhc
Confidence            999999999999999999999999999  489999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=4.2e-11  Score=97.28  Aligned_cols=111  Identities=28%  Similarity=0.488  Sum_probs=94.8

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++..++++.++.+.|.+.+...+||+++ +++++|+++.+|+...+.....   .....+.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~---~~~~~~~~~~~~-----------   66 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGL---DPLVTVGDVMTR-----------   66 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccC---CccccHHHHhcC-----------
Confidence            5678899999999999999999999999997 6899999999999887653211   011126677764           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++.+++++.++++.|.+.+.+++||+|+++ +++|+++..|+++
T Consensus        67 -~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~G~i~~~dl~~  112 (113)
T cd02205          67 -DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEG-RLVGIVTRSDILR  112 (113)
T ss_pred             -CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHhhc
Confidence             788999999999999999999999999999987 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.32  E-value=3.2e-11  Score=100.09  Aligned_cols=113  Identities=17%  Similarity=0.331  Sum_probs=92.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcC-CceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNN-IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  365 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  365 (438)
                      ++.++.+++++.++++.|...+ .+.+||+++  |+++|+++..|++..+........+...++.++|..          
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~----------   69 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP----------   69 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC----------
Confidence            4667899999999999998887 889999995  899999999999876543110011234578999974          


Q ss_pred             CCCCeEeCCCCCHHHHHHHHHhCCCC---EEEEEeCCCCeEEEEEeHHHHHH
Q 013669          366 VNPPITCKLESTLGSVIHSLASKSVH---RIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       366 ~~~~~~v~~~~tL~ea~~~m~~~~i~---~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                        ++.++.+++++.++++.|.+++..   ..+|++++| +++|+||..|+++
T Consensus        70 --~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~-~~~Gvvs~~di~~  118 (119)
T cd04598          70 --DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEG-RYLGIGTVKDLLR  118 (119)
T ss_pred             --CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCC-eEEEEEEHHHHhc
Confidence              789999999999999999998864   346888887 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.31  E-value=2.8e-11  Score=98.85  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=93.0

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      .++.++.+++++.+++..|.+++.+.+||+|.+ ++++|+++..|+....            ...++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~------------~~~~v~~----~~~~-~~   63 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD------------PDTTIEK----VMTK-NP   63 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc------------ccccHHH----HhcC-CC
Confidence            458899999999999999999999999999976 8999999999996421            2346777    6765 78


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.+++++.++++.|.+++...+||+++ +|+++|+++..|++.
T Consensus        64 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~  107 (108)
T cd04596          64 ITVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK  107 (108)
T ss_pred             eEECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence            99999999999999999999999999997 789999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.31  E-value=2.4e-11  Score=124.91  Aligned_cols=111  Identities=17%  Similarity=0.199  Sum_probs=96.5

Q ss_pred             ceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669          288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  365 (438)
Q Consensus       288 vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  365 (438)
                      ..++++++++.++++.|.+++++.+||+|+.  +++++|+||..|++...       ...+.++.++|+..         
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-------~~~~~~V~dIMt~~---------  170 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-------MSLDTKVKDFMTPF---------  170 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-------cCCCCCHHHHhCCC---------
Confidence            4689999999999999999999999999852  47999999999996431       12356899999831         


Q ss_pred             CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                       .+++++.+++++.+|+++|.+++++++||+|+++ +++|+||++||++..
T Consensus       171 -~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g-~LvGIIT~~Dilk~~  219 (502)
T PRK07107        171 -EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNG-NLVYLVFRKDYDSHK  219 (502)
T ss_pred             -CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEhHHHHhcc
Confidence             2678999999999999999999999999999888 999999999999965

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.31  E-value=3.4e-11  Score=121.59  Aligned_cols=169  Identities=10%  Similarity=0.156  Sum_probs=129.7

Q ss_pred             hhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc
Q 013669          188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF  267 (438)
Q Consensus       188 l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~  267 (438)
                      +..--.+...+|+++|...  .++++++.++++.++++.+.+++++++||++++.++++|+++.+|++.++..       
T Consensus       182 i~~vl~l~~~~v~diMtpr--~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-------  252 (408)
T TIGR03520       182 LQGIVSFGNTDTKQVMRPR--LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-------  252 (408)
T ss_pred             HHHHhccCCCEeeeeCCch--HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-------
Confidence            3344567788999999933  5799999999999999999999999999998765689999999999875432       


Q ss_pred             cccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013669          268 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL  347 (438)
Q Consensus       268 ~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~  347 (438)
                         ...++.+    +|.  ++.++++++++.++++.|.+++.+..+|+|+ .|.++|+||..|++..+.. +..... + 
T Consensus       253 ---~~~~l~~----~~~--~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivg-ei~de~-d-  319 (408)
T TIGR03520       253 ---KNFDWQS----LLR--EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVG-DISDEF-D-  319 (408)
T ss_pred             ---CCCCHHH----HcC--CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhC-CCCCcC-C-
Confidence               1224566    564  5789999999999999999999999999997 7999999999999998753 221111 1 


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHh
Q 013669          348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLAS  387 (438)
Q Consensus       348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~  387 (438)
                      .-.+.+..         .....+.++...++.++.+.|--
T Consensus       320 ~~~~~i~~---------~~~~~~~v~G~~~l~~l~~~l~~  350 (408)
T TIGR03520       320 DEDLIYSK---------IDDNNYVFEGKTSLKDFYKILKL  350 (408)
T ss_pred             cCccceEE---------eCCCeEEEEeccCHHHHHHHhCC
Confidence            11111221         01245778889999999888843

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=3.8e-11  Score=101.86  Aligned_cols=116  Identities=22%  Similarity=0.416  Sum_probs=94.5

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc--------------cccccCCc
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF--------------DIIASQPI  275 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~--------------~~l~~~~v  275 (438)
                      +++++.+++++.++++.|.+.+++++||+|++ ++++|+++..|+.+++.........              ..+...++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            47889999999999999999999999999987 8999999999999877543211100              00111256


Q ss_pred             cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .+    +|.+ ++..+.+++++.++++.|.+.+.+.+||+++  |+++|++|..|++.
T Consensus        81 ~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          81 EE----IMTK-KVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             HH----hccC-CceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            66    5665 7899999999999999999999999999994  89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=3.9e-11  Score=101.10  Aligned_cols=118  Identities=23%  Similarity=0.368  Sum_probs=94.3

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc-------ccccccCCccccccCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-------FDIIASQPISDLGLPF  282 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~-------~~~l~~~~v~~l~l~~  282 (438)
                      ++..+.+++++.+|+++|.+.+.+.+||+|++ ++++|++|..|+.+++........       .......++.+    +
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   76 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD----A   76 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH----H
Confidence            46788999999999999999999999999987 899999999999876532210000       00112345677    6


Q ss_pred             CCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeC-CCCeEEEEEeHHHHHH
Q 013669          283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRH  333 (438)
Q Consensus       283 m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~lvGiIs~~Dl~~  333 (438)
                      |.. +++++.+++++.++++.|.+++...+||++. ++++++|+||.+|++.
T Consensus        77 ~~~-~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          77 MSS-PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             hcC-CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            776 7899999999999999999999999999852 2689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.30  E-value=4.6e-11  Score=98.15  Aligned_cols=112  Identities=26%  Similarity=0.400  Sum_probs=95.8

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      .++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++..++.+.+.....      ....++.+    +|.+ ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~------~~~~~v~~----~~~~-~~   69 (114)
T cd04604           2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLD------ILTLPVAD----VMTR-NP   69 (114)
T ss_pred             CcccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCc------cccCCHHH----hhcc-CC
Confidence            346778999999999999988889999999987 899999999999987764311      12346777    6776 78


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.+++++.++++.|.+++...+||+++ +++++|+|+..|++.
T Consensus        70 ~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~  113 (114)
T cd04604          70 KTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR  113 (114)
T ss_pred             eEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence            89999999999999999999999999997 799999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.30  E-value=2.7e-11  Score=116.80  Aligned_cols=194  Identities=11%  Similarity=0.163  Sum_probs=136.2

Q ss_pred             hhhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc
Q 013669          187 VILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW  266 (438)
Q Consensus       187 ~l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~  266 (438)
                      .+..--.+...+|+++|...  .+++++++++++.++++.+.+++++++||++++.++++|+++.+|++..+....    
T Consensus        57 ~i~~vl~l~~~~V~diMtpr--~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~----  130 (292)
T PRK15094         57 MLEGVMDIADQRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA----  130 (292)
T ss_pred             HHHHHhccCCCEEeEEccch--HHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC----
Confidence            34444567788999999832  479999999999999999999999999999875468999999999987553210    


Q ss_pred             ccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccccc
Q 013669          267 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ  346 (438)
Q Consensus       267 ~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~  346 (438)
                          ....+.+    +|.  +++++++++++.++++.|.+++.+.+||+|+ .|.++|+||..|++..+.. +.......
T Consensus       131 ----~~~~l~~----l~r--~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG-ei~de~d~  198 (292)
T PRK15094        131 ----EAFSMDK----VLR--QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG-EIEDEYDE  198 (292)
T ss_pred             ----CcCCHHH----HcC--CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC-CCcccccc
Confidence                1224666    565  4668999999999999999999999999997 7889999999999998763 21111100


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669          347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  420 (438)
Q Consensus       347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~  420 (438)
                       ....-+..         ....-+.++...+|.++.+.+--   . +|   + +    +.-|...++-......
T Consensus       199 -~~~~~i~~---------~~~~~~~v~G~~~l~dl~~~l~~---~-l~---~-~----~~~Tl~G~i~~~l~~i  250 (292)
T PRK15094        199 -EDDIDFRQ---------LSRHTWTVRALASIEDFNEAFGT---H-FS---D-E----EVDTIGGLVMQAFGHL  250 (292)
T ss_pred             -ccccccEE---------eCCCeEEEEeccCHHHHHHHhCC---C-CC---C-C----CCccHHHHHHHHhCcC
Confidence             00000111         01234677778888877776522   1 22   1 1    3446666666555443

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.29  E-value=2.9e-11  Score=124.42  Aligned_cols=116  Identities=14%  Similarity=0.188  Sum_probs=100.0

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT  359 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~  359 (438)
                      .|.. +++++++++++.+++++|.+++++.+||+++.  +++++|+++.+|+...-   .     ...++.++|++.   
T Consensus       101 g~i~-dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~---~-----~~~~V~diMt~~---  168 (495)
T PTZ00314        101 GFIM-DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK---D-----KSTPVSEVMTPR---  168 (495)
T ss_pred             cccc-CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc---c-----CCCCHHHhhCCc---
Confidence            3444 78999999999999999999999999999862  27999999999997431   1     246899999731   


Q ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                             .+++++.+++++.+++++|.+++++.+||+|+++ +++|+||++||++...
T Consensus       169 -------~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g-~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        169 -------EKLVVGNTPISLEEANEVLRESRKGKLPIVNDNG-ELVALVSRSDLKKNRG  218 (495)
T ss_pred             -------CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCC-cEEEEEEehHhhhccc
Confidence                   2689999999999999999999999999999998 9999999999998765

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.29  E-value=5.9e-11  Score=97.40  Aligned_cols=112  Identities=16%  Similarity=0.284  Sum_probs=94.9

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++.++.+++++.++++.|.++++.++||+|++ ++++|+++..|+.+++.+...      ....++.+    +|.+ ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~------~~~~~v~~----~~~~-~~~   69 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSL------YDLVVASD----IMTK-PPV   69 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccc------cccEEHHH----hccC-CCc
Confidence            47789999999999999999999999999987 899999999999887654311      11256777    6776 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+.+...+||++...++++|+++..|++.
T Consensus        70 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          70 VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             EEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            99999999999999999999999999831389999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.29  E-value=3.1e-11  Score=102.86  Aligned_cols=117  Identities=19%  Similarity=0.373  Sum_probs=95.2

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC---CCccc-------------cccc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG---RDWFD-------------IIAS  272 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~---~~~~~-------------~l~~  272 (438)
                      .++.++.+++++.++++.|.+++.+++||+|++ ++++|+++..|+.+.......   ..|..             ....
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            468889999999999999999999999999976 899999999999876543210   00000             0123


Q ss_pred             CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.+    +|.+ ++.++.+++++.++++.|.+.+.+.+||+|  +|+++|+||..|++.
T Consensus        81 ~~v~~----~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVAD----VMTR-PVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHH----HhCC-CceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence            45667    6765 789999999999999999999999999998  689999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.29  E-value=7.5e-11  Score=96.39  Aligned_cols=108  Identities=19%  Similarity=0.413  Sum_probs=93.1

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      +++++.+++++.++++.|.+++++++||+++  +++.|+++..|+++......        ...++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~--------~~~~v~~----~~~~-~~~   66 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL--------ELAKVKD----VMTK-DVI   66 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc--------cccCHHH----HhcC-Cce
Confidence            4778999999999999999999999999997  69999999999998765331        1245667    5665 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+.+...+||+++ +|+++|+|+..|++.
T Consensus        67 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  109 (110)
T cd04588          67 TIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR  109 (110)
T ss_pred             EECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence            9999999999999999999999999986 689999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=7.7e-11  Score=97.20  Aligned_cols=110  Identities=25%  Similarity=0.398  Sum_probs=90.3

Q ss_pred             CceEEeCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          210 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~-i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      ++..+.++.++.++++.|.+++ ...+||+|.  ++++|+++..|+++++....  .    ....++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~--~----~~~~~i~~----~~~~-~~   68 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGK--D----LSDLPIGE----VMTQ-PV   68 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCC--C----ccccCHHH----hcCC-Cc
Confidence            4678899999999999998888 566777774  79999999999998765321  0    12346777    6765 77


Q ss_pred             eEEcCC--CcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          289 ITIQSN--ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.++  +++.++++.|.+++...+||+|+ +|+++|+||.+|+++
T Consensus        69 ~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~  114 (115)
T cd04620          69 VTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ  114 (115)
T ss_pred             EEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence            888877  68999999999999999999997 799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.28  E-value=9e-11  Score=95.91  Aligned_cols=109  Identities=18%  Similarity=0.350  Sum_probs=94.0

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++..+++++++.++++.|.+++.+.+||+|+  ++++|+++..|+.++.....  .     ...++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~--~-----~~~~v~~----~~~~-~~~   67 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGP--D-----LQTPVGE----VMSS-PLL   67 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCC--C-----CCcCHHH----hcCC-Cce
Confidence            4678999999999999999989999999986  79999999999998775431  1     2356777    6765 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+.+...+||+++ +|+++|+|+.+|+++
T Consensus        68 ~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~  110 (111)
T cd04611          68 TVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ  110 (111)
T ss_pred             EECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence            9999999999999999999999999997 789999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.28  E-value=7.1e-11  Score=98.08  Aligned_cols=116  Identities=22%  Similarity=0.364  Sum_probs=94.4

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccc----ccccCCccccccCCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIASQPISDLGLPFMSS  285 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~----~l~~~~v~~l~l~~m~~  285 (438)
                      ++.+++++.++.++++.|.+.++..+||+|+  ++++|+++..|+.++...........    .....++.+    +|.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   75 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD----IMTR   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH----hccC
Confidence            4678999999999999999999999999997  79999999999988764321100000    012245666    6766


Q ss_pred             CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       286 ~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                       ++.++.+++++.+++..|.+.+.+.+||+++ +|+++|+||..|++.
T Consensus        76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~  121 (122)
T cd04585          76 -DPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR  121 (122)
T ss_pred             -CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence             7899999999999999999999999999996 699999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=5.4e-11  Score=100.13  Aligned_cols=112  Identities=17%  Similarity=0.212  Sum_probs=89.0

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH-----hhcCCCCCcccccccCCccccccCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG-----LEGCKGRDWFDIIASQPISDLGLPFMS  284 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~-----l~~~~~~~~~~~l~~~~v~~l~l~~m~  284 (438)
                      +++++.+++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+.     +.... .    .....++.+    +|.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~-~----~~~~~~v~~----im~   71 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGG-I----SRSELTVAD----VMT   71 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcC-C----CchheEHHH----hcC
Confidence            46789999999999999999999999999976 899999999999752     22110 0    013456777    676


Q ss_pred             CCCceE--E----cCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHH
Q 013669          285 SDEVIT--I----QSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRH  333 (438)
Q Consensus       285 ~~~vv~--v----~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~  333 (438)
                      + +...  +    .+++++.++++.|.+++.+.+||+|+ + |+++|+||.+|+++
T Consensus        72 ~-~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~  125 (126)
T cd04640          72 P-KEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR  125 (126)
T ss_pred             c-hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence            5 3332  3    36889999999999999999999997 5 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.28  E-value=3.3e-11  Score=115.35  Aligned_cols=113  Identities=26%  Similarity=0.402  Sum_probs=98.1

Q ss_pred             CCccccccCCCCCCC-ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013669          273 QPISDLGLPFMSSDE-VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  351 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~-vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~  351 (438)
                      .++++    +|.+ + +.++.+++++.++++.|.+.+++.+||+|+ +|+++|+++..|++..+....    ....++.+
T Consensus       155 ~~v~~----im~~-~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~~----~~~~~v~~  224 (268)
T TIGR00393       155 VKVKD----LMQT-TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGGG----SLKSEVRD  224 (268)
T ss_pred             hhHHH----HhCC-CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcCC----cccCcHHH
Confidence            35667    6776 6 889999999999999999999999999997 799999999999988754211    12467999


Q ss_pred             HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEe
Q 013669          352 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT  408 (438)
Q Consensus       352 ~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT  408 (438)
                      +|..            ++.++.+++++.+|++.|.+++.+++||+|++| +++|+|+
T Consensus       225 im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~l~GvI~  268 (268)
T TIGR00393       225 FMTL------------GPKTFKLDALLLEALEFLERRKITSLVVVDDHN-KVLGVLH  268 (268)
T ss_pred             hCCC------------CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCC-eEEEEEC
Confidence            9974            788999999999999999999999999999988 9999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.27  E-value=9.5e-11  Score=95.93  Aligned_cols=109  Identities=21%  Similarity=0.390  Sum_probs=92.5

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++.+++++.++.++++.|.+++++.+||+|+  ++++|+++..|+.+.+.... ..     ...++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~-~~-----~~~~i~~----~~~~-~~~   68 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEG-LD-----PDTPVSE----VMTA-PPI   68 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccC-CC-----ccCCHHH----HhCC-CCe
Confidence            4778999999999999999999999999986  79999999999987554321 10     2346777    5665 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++.+++||++  +|+++|++|.+|++.
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Giit~~di~~  110 (111)
T cd04800          69 TIPPDATVFEALLLMLERGIHHLPVVD--DGRLVGVISATDLLR  110 (111)
T ss_pred             EECCCCcHHHHHHHHHHcCCCeeeEeE--CCEEEEEEEHHHhhc
Confidence            999999999999999999999999998  489999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=9.7e-11  Score=96.04  Aligned_cols=110  Identities=16%  Similarity=0.309  Sum_probs=91.2

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      .+.++.+++++.++++.|.+++.+.++|.++  ++++|+++..|+.+.+.... ..    +...++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-~~----~~~~~v~~----~~~~-~~~   69 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHG-AG----VLDTTVRA----IMNP-EPI   69 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcC-Cc----hhcCCHHH----HhCC-CCe
Confidence            3678899999999999998888877777754  79999999999998765321 11    12346778    6765 788


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++...+||++  +|+++|++|.+|++.
T Consensus        70 ~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~  111 (112)
T cd04625          70 VASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK  111 (112)
T ss_pred             EECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence            999999999999999999999999998  589999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.27  E-value=1.1e-10  Score=95.40  Aligned_cols=108  Identities=26%  Similarity=0.473  Sum_probs=93.7

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      .++.+++++.++.++++.|.+++..++||+|+  ++++|+++..|+.+.+...    +    ...++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~----~----~~~~~~~----~~~~-~~   66 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHG----L----GHAPVKD----YMST-DV   66 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhcc----c----ccCcHHH----HhcC-CC
Confidence            46889999999999999999889999999997  7999999999998866322    1    3356777    6776 78


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.+++++.++++.|.+++...+||++  +|+++|++|..|++.
T Consensus        67 ~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~  109 (110)
T cd04595          67 VTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR  109 (110)
T ss_pred             EEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence            9999999999999999999999999998  689999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.27  E-value=6.7e-11  Score=96.43  Aligned_cols=101  Identities=20%  Similarity=0.373  Sum_probs=87.6

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  364 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  364 (438)
                      ....+.+++++.++.+.|.+.+...+||+++.  +++++|+++.+|+.....+              +|..         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------~m~~---------   59 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------YIDP---------   59 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH--------------hccC---------
Confidence            46778999999999999999988999999852  3899999999999876431              5653         


Q ss_pred             CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          365 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       365 ~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                         ++.++++++++.++++.|.+++.+++||++ +| +++|+||++||+++
T Consensus        60 ---~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~-~~~Gvvt~~dl~~~  105 (105)
T cd04591          60 ---SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EG-RLVGIITRKDLLKA  105 (105)
T ss_pred             ---CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CC-eEEEEEEhhhhhcC
Confidence               788999999999999999999999999995 55 99999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.27  E-value=1.2e-10  Score=118.94  Aligned_cols=120  Identities=15%  Similarity=0.204  Sum_probs=102.9

Q ss_pred             CCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC
Q 013669          195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  274 (438)
Q Consensus       195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~  274 (438)
                      ...++.++|.    .+++++.+++++.+++++|.+++++.+||+|+  ++++|+||.+|+...       .     ...+
T Consensus        86 ~~VKv~eim~----~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~-------~-----~~~~  147 (475)
T TIGR01303        86 AFVKSRDLVL----DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV-------D-----RFTQ  147 (475)
T ss_pred             hhcchhhccc----cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC-------C-----CCCC
Confidence            3445667777    67899999999999999999999999999985  689999999998321       1     2246


Q ss_pred             ccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013669          275 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  338 (438)
Q Consensus       275 v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~  338 (438)
                      +.+    +|+. +++++.+++++.+++++|.++++..+||+|+ +++++|+||.+||++....+
T Consensus       148 V~d----IMt~-~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       148 VRD----IMST-DLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             HHH----HccC-CceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhCC
Confidence            888    7886 8999999999999999999999999999997 79999999999999876543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.27  E-value=9.7e-11  Score=95.87  Aligned_cols=109  Identities=14%  Similarity=0.259  Sum_probs=91.9

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      +++++.+++++.+|++.|.++++..+||++++.++++|+++..|+.+......  .      ..++.+    ++ . ++.
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~--~------~~~~~~----~~-~-~~~   67 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE--E------DLDLRD----LL-R-PPL   67 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC--C------cCCHHH----Hh-c-CCe
Confidence            36889999999999999999999999999875368999999999998775321  1      134555    44 3 578


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++.+.+||+++ +|+++|++|.+|++.
T Consensus        68 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~  110 (111)
T cd04590          68 FVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE  110 (111)
T ss_pred             ecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence            8999999999999999999999999997 799999999999863

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.27  E-value=7.2e-11  Score=120.26  Aligned_cols=134  Identities=22%  Similarity=0.432  Sum_probs=113.7

Q ss_pred             cccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013669          270 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT  348 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~  348 (438)
                      +.+.++++    +|++ .+++.++.+.++.++.+.+.+++++++||+++..+.++|++..+|++....+...     ...
T Consensus       203 l~~~~v~e----iMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-----~~~  273 (429)
T COG1253         203 LDDRTVRE----IMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-----DLD  273 (429)
T ss_pred             cCCcEeee----EeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-----ccc
Confidence            35778999    7887 4788999999999999999999999999999547899999999999998764321     011


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcccc
Q 013669          349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDN  426 (438)
Q Consensus       349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~~  426 (438)
                      ....+             +++..++++.++.++++.|.+.+.|-..|+|+.| .+.|+||+.||++.+++|.++.+++
T Consensus       274 ~~~~~-------------~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG-~~~GlVTleDIiEeIvGei~de~d~  337 (429)
T COG1253         274 LRVLV-------------RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYG-GVEGLVTLEDIIEEIVGEIPDEHDE  337 (429)
T ss_pred             hhhcc-------------cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCC-CeEEEeEHHHHHHHHhCCCcCcccc
Confidence            11222             2789999999999999999999999999999998 9999999999999999988877764

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.27  E-value=5.4e-11  Score=125.93  Aligned_cols=127  Identities=12%  Similarity=0.224  Sum_probs=107.5

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      +...+++|+|.    +++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+.+.+.....      ....
T Consensus       444 L~~~~V~dim~----~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~------~~~~  512 (574)
T PRK01862        444 LRTTQMRELIQ----PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRD------TTDK  512 (574)
T ss_pred             HhhCcHHHHhc----CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccc------cccc
Confidence            44567999998    678899999999999999999999999999987 899999999999886543211      1234


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhc
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~  336 (438)
                      ++.+    +|.+ ++.++.+++++.++++.|.+++.+.+||+|+++ ++++|+||++|+++.+.
T Consensus       513 ~v~d----im~~-~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        513 TAAD----YAHT-PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             hHHH----hccC-CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence            6778    7876 789999999999999999999999999998622 58999999999998864

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.27  E-value=1e-10  Score=96.01  Aligned_cols=111  Identities=17%  Similarity=0.264  Sum_probs=92.7

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++..+.+++++.++++.|.+++.+.+||+++  ++++|+++..|+++.+.... ...    ...++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~-~~~----~~~~v~~----i~~~-~~~   69 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQG-LDP----ESTLVER----VMTP-NPV   69 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcC-CCc----CcCCHHH----hcCC-CCe
Confidence            4778999999999999999999999999986  79999999999986544221 110    1246777    6765 788


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++..++||+++ +++++|+||..|++.
T Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~  112 (113)
T cd04587          70 CATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH  112 (113)
T ss_pred             EEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence            9999999999999999999999999997 689999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=6.2e-11  Score=98.78  Aligned_cols=117  Identities=21%  Similarity=0.347  Sum_probs=93.9

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC-Cc--ccccccCCccccccCCCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR-DW--FDIIASQPISDLGLPFMSSD  286 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~-~~--~~~l~~~~v~~l~l~~m~~~  286 (438)
                      +++++.+++++.++++.|.+++++++||+|.+ ++++|+++..|+++........ ..  .......++.+    +|.. 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-   75 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK----IMST-   75 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----HhcC-
Confidence            47889999999999999999999999999976 8999999999998753211000 00  00012345666    5665 


Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.++.+++++.++++.|.+.+.+.+||+++ +|+++|++|..|++.
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~  121 (122)
T cd04635          76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence            7899999999999999999999999999997 799999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.5e-10  Score=94.96  Aligned_cols=110  Identities=23%  Similarity=0.357  Sum_probs=92.1

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++.++.+++++.++++.|.+++.+.+||+|+  ++++|+++..|+++.+......     ....++.+    +|.+ ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~~~----~~~~-~~~   69 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLK-----PREVPVGE----VMST-PLI   69 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCC-----cccCCHHH----hcCC-CcE
Confidence            4678899999999999999999999999996  4899999999999866432100     12346777    6765 788


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++...+||+++  ++++|+|+.+|++.
T Consensus        70 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~  111 (112)
T cd04802          70 TIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM  111 (112)
T ss_pred             EECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence            9999999999999999999999999995  49999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.26  E-value=4.1e-11  Score=119.88  Aligned_cols=126  Identities=21%  Similarity=0.335  Sum_probs=111.4

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      +-.+++.+++.    .|.+++++..++.+|...|.+++++++.+++++ +...||+|.+|+...+...- .+     ...
T Consensus       146 ~~~trv~~~~~----~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g-~~-----~~~  214 (610)
T COG2905         146 FILTRVGEVKT----LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADG-RS-----KTQ  214 (610)
T ss_pred             HHHHHHHHHhc----CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcC-CC-----ccc
Confidence            44466788888    889999999999999999999999999999977 89999999999987665321 22     467


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      ++++    +|+. +++++..++.+.+|+-.|.++++.++||++  +|+++|+||..||+.+...
T Consensus       215 ~V~e----vmT~-p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         215 KVSE----VMTS-PVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             chhh----hhcc-CceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhCC
Confidence            8999    8997 999999999999999999999999999999  7999999999999999864

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.8e-10  Score=93.56  Aligned_cols=104  Identities=18%  Similarity=0.368  Sum_probs=90.6

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      ++.++..+.++.+++..|.+.+.+.+||+++ +++++|+++..+++...         ...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~v~~~~l~~~~---------~~~~~~~~~~~-----------   60 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK-SGELVGIITRKDLLRNP---------EEEQLALLMTR-----------   60 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhcc---------ccchHHHHhcC-----------
Confidence            5778899999999999999999999999997 68999999999997531         12357788764           


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                       ++.++..++++.++++.|.+++.+.+||+|+ | +++|+||..|+++
T Consensus        61 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~-~~~G~it~~d~~~  105 (106)
T cd04638          61 -DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-G-KLVGIVTVADIVR  105 (106)
T ss_pred             -CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHhhc
Confidence             7888999999999999999999999999985 5 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.25  E-value=1.3e-10  Score=95.04  Aligned_cols=109  Identities=26%  Similarity=0.420  Sum_probs=92.7

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      +++.+.+++++.++++.|.+.+++++||+|+  ++++|+++..|+.+......  .     ...++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~--~-----~~~~~~~----~~~~-~~~   67 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR--E-----ATVLVGD----VMTR-DPV   67 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc--c-----cccCHHH----hccC-CCe
Confidence            5788999999999999999989999999997  79999999999987664321  0     1124555    5665 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.++++.|.+++...+||+++ +++++|++|..|+++
T Consensus        68 ~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  110 (111)
T cd04612          68 TASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR  110 (111)
T ss_pred             EECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence            9999999999999999999999999986 799999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.25  E-value=1.7e-10  Score=94.50  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=92.6

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      +++.++++.++.++++.|.+++...+||+|+  +++.|+++..|+.+.+.... .     ....++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~-~-----~~~~~i~~----~~~~-~~~   68 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDG-L-----PSSTPVGE----IATF-PLI   68 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCC-C-----CCCCCHHH----HhCC-CcE
Confidence            3678899999999999999999999999997  68999999999988764321 0     13446777    6765 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .+++++++.++++.|.+++...+||++  +++++|+||..|++.
T Consensus        69 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~  110 (111)
T cd04589          69 TVDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLS  110 (111)
T ss_pred             EECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhc
Confidence            999999999999999999999999998  589999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.23  E-value=1.6e-10  Score=96.03  Aligned_cols=116  Identities=19%  Similarity=0.362  Sum_probs=93.9

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc---cccccCCccccccCCCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF---DIIASQPISDLGLPFMSSD  286 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~---~~l~~~~v~~l~l~~m~~~  286 (438)
                      ++.++++++++.+|++.|.+.+.+++||+|++ ++++|+++..|+.+...........   ......++.+    +|.. 
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~-   75 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE----IMTK-   75 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----HhhC-
Confidence            47789999999999999999999999999987 8999999999998765321100000   0123456777    6766 


Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.++.+++++.++++.|.+.+...+||++  +++++|+++.+|++.
T Consensus        76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvv~~~di~~  120 (121)
T cd04584          76 DVITVHPLDTVEEAALLMREHRIGCLPVVE--DGRLVGIITETDLLR  120 (121)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHhhc
Confidence            789999999999999999999999999998  489999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.23  E-value=2.1e-10  Score=94.60  Aligned_cols=108  Identities=27%  Similarity=0.498  Sum_probs=94.8

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      ..++++.++.++.+|+..|.++++..+||++.  .+++|++|.+|+.+.+......       ..++.+    +|+. ++
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~-------~~~v~~----v~~~-~~   72 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKR-------LLPVKE----VMTK-PV   72 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCc-------cccHHH----hccC-Cc
Confidence            56899999999999999999999999999986  4799999999999988755211       115777    7876 89


Q ss_pred             eEEcCCCcHHHHHHHHHH-cCCceEeEEeCCCC-eEEEEEeHHHH
Q 013669          289 ITIQSNELILEAFKRMKD-NNIGGIPVVEGQQK-KIVGNVSIRDI  331 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~~~-~lvGiIs~~Dl  331 (438)
                      +++.++.++.++.+.|.+ ++++++||+++ ++ +++|++|.+|+
T Consensus        73 ~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di  116 (117)
T COG0517          73 VTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDI  116 (117)
T ss_pred             EEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHc
Confidence            999999999999999999 79999999997 65 99999999997

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.23  E-value=1.4e-10  Score=119.41  Aligned_cols=126  Identities=21%  Similarity=0.347  Sum_probs=103.4

Q ss_pred             cccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013669          266 WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  345 (438)
Q Consensus       266 ~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~  345 (438)
                      .++.+...++++    +|.+ ++.++.+++++.++++.|.+++++.+||+|+ +++++|+|+..|++..+.....   ..
T Consensus       328 ~~~~l~~~~v~~----im~~-~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~~  398 (454)
T TIGR01137       328 VFDVLKNATVKD----LHLP-APVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKA---NP  398 (454)
T ss_pred             HHHHhccCCHHH----hCcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCC---Cc
Confidence            333455667888    7876 8999999999999999999999999999997 7899999999999886643211   12


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       346 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                      ..++.++|..            ++.++++++++.+++++|.+++   .+||++++ +++|+||++||++.|
T Consensus       399 ~~~v~~im~~------------~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g-~liGvvt~~dll~~l  453 (454)
T TIGR01137       399 DDAVSKVMSK------------KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEG-KPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCCHHHhcCC------------CCeEECCcCcHHHHHHHHHHCC---eeEEEECC-EEEEEEEHHHHHHhh
Confidence            3479999974            7889999999999999998753   45666666 999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.23  E-value=1.8e-10  Score=95.06  Aligned_cols=106  Identities=18%  Similarity=0.331  Sum_probs=88.7

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcC---CCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEP---GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  286 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~---~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~  286 (438)
                      ++.++.+++++.++++.|.+++...+||+|.   + ++++|+++..|+.....           ...++.+    +|.. 
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~-~~~~G~v~~~dl~~~~~-----------~~~~v~~----~~~~-   65 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSG-GKLLGIVTSRDIDFLTD-----------SETPLSE----VMTP-   65 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcC-CEEEEEEEhHHhhhhhc-----------cCCCHHH----hcCC-
Confidence            4778899999999999999889999999996   4 79999999999864211           1235677    6765 


Q ss_pred             CceEEcC--CCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          287 EVITIQS--NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       287 ~vv~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ...++..  ++++.++++.|.+++...+||+++ +++++|+||.+|++.
T Consensus        66 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~  113 (114)
T cd04602          66 REVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK  113 (114)
T ss_pred             CceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence            5666655  999999999999999999999987 789999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=2e-10  Score=94.29  Aligned_cols=110  Identities=23%  Similarity=0.440  Sum_probs=91.9

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH-HHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~-~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      +++++.+++++.++++.|.+++.+.+||+|+  ++++|+++..|++ +.+...  ..    ....++.+    +|.. .+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~--~~----~~~~~~~~----~~~~-~~   68 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEG--RD----PDTTTVGD----VMTR-GV   68 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhcc--CC----cccCCHHH----hccC-Cc
Confidence            4678999999999999999999999999996  7999999999987 333322  11    12234777    6765 78


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.+++++.++++.|.+.+..++||+++ +|+++|+++..|+++
T Consensus        69 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  112 (113)
T cd04622          69 VTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR  112 (113)
T ss_pred             cEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            89999999999999999999999999986 689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=1.2e-10  Score=97.20  Aligned_cols=116  Identities=18%  Similarity=0.314  Sum_probs=93.9

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccc--c--cccCCccccccCCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD--I--IASQPISDLGLPFMSS  285 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~--~--l~~~~v~~l~l~~m~~  285 (438)
                      +++++.+++++.++++.|.++++.++||+|+  |+++|+++..|+.+.+..........  .  ....++.+    +|..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   75 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ----IMTR   75 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH----hhcC
Confidence            4788999999999999999999999999996  79999999999988664321000000  0  01235666    6765


Q ss_pred             CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       286 ~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                       +++++.+++++.++++.|.+++...+||+++ +++++|+++..|++.
T Consensus        76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~  121 (122)
T cd04637          76 -DPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK  121 (122)
T ss_pred             -CCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence             7899999999999999999999999999987 789999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.5e-10  Score=96.38  Aligned_cols=114  Identities=30%  Similarity=0.468  Sum_probs=93.4

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc-----ccccccCCccccccCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-----FDIIASQPISDLGLPFMS  284 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~-----~~~l~~~~v~~l~l~~m~  284 (438)
                      +++++.+++++.++++.|.+++++.+||+|+  ++++|+++..|+.+.+..... .+     ...+...++.+    +|.
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~   74 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRP-LVRDRHQERRIRNLPVSD----IMT   74 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhh-cccchhhhhhhhccCHHH----Hcc
Confidence            5778999999999999999999999999996  799999999999876653210 00     00122345666    576


Q ss_pred             CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       285 ~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      . ++.++.+++++.++++.|.+.+.+.+||+++  ++++|+++.+|++.
T Consensus        75 ~-~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          75 R-PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             C-CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            5 7899999999999999999999999999994  89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.21  E-value=1.3e-10  Score=111.33  Aligned_cols=113  Identities=21%  Similarity=0.356  Sum_probs=98.3

Q ss_pred             CchhhhccccCCCC-ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCc
Q 013669          197 TTVRSIIKSYRWAP-FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  275 (438)
Q Consensus       197 ~~v~di~~~~~~~~-~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v  275 (438)
                      .+++++|.    .+ +.++.+++++.++++.|.+.+++.+||+|++ ++++|+++..|+.+.+....  .     ...++
T Consensus       155 ~~v~~im~----~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~--~-----~~~~v  222 (268)
T TIGR00393       155 VKVKDLMQ----TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGG--S-----LKSEV  222 (268)
T ss_pred             hhHHHHhC----CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCC--c-----ccCcH
Confidence            46889998    56 8899999999999999999999999999977 89999999999988664321  1     34578


Q ss_pred             cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEe
Q 013669          276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS  327 (438)
Q Consensus       276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs  327 (438)
                      ++    +|.+ ++.++.+++++.++++.|.+++...+||+|+ +|+++|+|+
T Consensus       223 ~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~  268 (268)
T TIGR00393       223 RD----FMTL-GPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH  268 (268)
T ss_pred             HH----hCCC-CCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence            88    7876 7899999999999999999999999999997 789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.21  E-value=1.6e-10  Score=94.30  Aligned_cols=107  Identities=20%  Similarity=0.431  Sum_probs=89.8

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      .+++.+.+++++.++++.|.+++...+||+|++ |+++|+++..++.+...           ...++.+    +|.. .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~-----------~~~~v~~----~~~~-~~   64 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD-----------LDKPVSE----VMTP-EN   64 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc-----------CCCCHHH----hccc-Cc
Confidence            457889999999999999999999999999987 89999999999854211           2346777    6765 55


Q ss_pred             eEEcC-CCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          289 ITIQS-NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ..+.. ++++.++++.|.+.+.+.+||+++ +++++|+|+.+|++.
T Consensus        65 ~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~  109 (110)
T cd04601          65 LLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK  109 (110)
T ss_pred             eEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence            66666 999999999999999999999997 789999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.21  E-value=2.5e-10  Score=92.31  Aligned_cols=102  Identities=26%  Similarity=0.421  Sum_probs=88.9

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++..+.+++++.++++.|.+++.+.+||+| + ++++|+++..|+.+..            ...++.+    +|.+ ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~------------~~~~~~~----~~~~-~~~   62 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAH------------PNRLVAD----AMTR-EVV   62 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhccc------------ccCCHHH----HccC-CCE
Confidence            467889999999999999989999999998 4 7999999999997632            1235666    6766 789


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  332 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~  332 (438)
                      ++.+++++.++++.|.+++...+||++  +++++|++|..|++
T Consensus        63 ~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~~l~  103 (105)
T cd04599          63 TISPEASLLEAKRLMEEKKIERLPVLR--ERKLVGIITKGTIA  103 (105)
T ss_pred             EECCCCCHHHHHHHHHHcCCCEeeEEE--CCEEEEEEEHHHhc
Confidence            999999999999999999999999999  48999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.21  E-value=1.6e-10  Score=94.38  Aligned_cols=102  Identities=17%  Similarity=0.342  Sum_probs=86.9

Q ss_pred             EeCCCCHHHHHHHHHhCC-----CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          214 VATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       214 v~~~~sl~~al~~m~~~~-----i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      +.+++++.++++.|.+++     +..+||+|++ ++++|+++..|+++.   .         ...++.+    +|.+ ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~---~---------~~~~v~~----~~~~-~~   63 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLA---D---------PDTPVSD----IMDT-DV   63 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcC---C---------CcchHHH----HhCC-CC
Confidence            568899999999998777     4789999976 899999999998651   0         2345777    6665 78


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  334 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  334 (438)
                      ..+.+++++.++++.|.+++...+||+++ +++++|+||..|++..
T Consensus        64 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~  108 (109)
T cd04606          64 ISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDV  108 (109)
T ss_pred             eEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhh
Confidence            99999999999999999999999999987 7899999999999865

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=3.7e-10  Score=91.64  Aligned_cols=111  Identities=22%  Similarity=0.387  Sum_probs=93.1

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++.++.+++++.++++.|.+++.+++||++++ ++++|+++..|+.+.+.......      ...+.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~------~~~~~~----~~~~-~~~   69 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDP------LVTVGD----VMTR-DVV   69 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCc------cccHHH----HhcC-Cce
Confidence            46788999999999999999999999999987 79999999999998776432110      011445    5655 788


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .+.+++++.+++..|.+.+...+||+++ +++++|+++..|++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  112 (113)
T cd02205          70 TVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR  112 (113)
T ss_pred             ecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence            8999999999999999999999999997 799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.20  E-value=1.3e-10  Score=119.40  Aligned_cols=122  Identities=18%  Similarity=0.223  Sum_probs=100.0

Q ss_pred             hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      |+++|...- ....++++++++.+|+++|.+++++.+||+|++  +++++|+||..|+.+.. .         ....+++
T Consensus        96 Vk~~~~g~i-~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-~---------~~~~~V~  164 (502)
T PRK07107         96 VKNYKAGFV-VSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-M---------SLDTKVK  164 (502)
T ss_pred             HHHHhcCCc-CCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-c---------CCCCCHH
Confidence            556554221 223689999999999999999999999999962  37999999999985321 0         1456788


Q ss_pred             ccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          277 DLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       277 ~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +    +|++ .+++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|++....
T Consensus       165 d----IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~~~  220 (502)
T PRK07107        165 D----FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSHKE  220 (502)
T ss_pred             H----HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhccc
Confidence            8    7874 36889999999999999999999999999997 789999999999988643

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.18  E-value=3.8e-10  Score=91.90  Aligned_cols=108  Identities=20%  Similarity=0.326  Sum_probs=89.1

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      +++++.+++++.++++.|.+++++.+||+|.  ++++|+++..|+.+.+..... .     ...++.+    +|.. ++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~-~-----~~~~~~~----~~~~-~~~   68 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKA-K-----FSLPVRE----VMGE-PLP   68 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhcccc-c-----cCcCHHH----HhcC-CCc
Confidence            4778999999999999999999999999996  799999999999987754311 0     1345666    5665 788


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++++++++.++.++|.+ . ..+||+++ +++++|++|.+|++.
T Consensus        69 ~v~~~~~l~~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~  109 (110)
T cd04609          69 TVDPDAPIEELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLK  109 (110)
T ss_pred             eeCCCCcHHHHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhc
Confidence            99999999999999988 3 34788886 799999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.17  E-value=5.3e-10  Score=90.66  Aligned_cols=100  Identities=16%  Similarity=0.243  Sum_probs=86.9

Q ss_pred             eEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceEE
Q 013669          212 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITI  291 (438)
Q Consensus       212 i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v  291 (438)
                      +++.+++++.++++.|.+.++..+||+|+  ++++|+++..|+.+..             ..++.+    +|.. .+.++
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~-------------~~~~~~----~~~~-~~~~v   63 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT-------------YGDVVD----YIVR-GIPYV   63 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc-------------ccchhh----hhhc-CCcEE
Confidence            57899999999999999999999999996  7999999999997531             124556    5665 68899


Q ss_pred             cCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          292 QSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       292 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .+++++.++++.|.+++...+||++  +|+++|++|.+|++.
T Consensus        64 ~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~  103 (104)
T cd04594          64 RLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD  103 (104)
T ss_pred             cCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence            9999999999999999999999998  689999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.15  E-value=4.1e-10  Score=116.06  Aligned_cols=113  Identities=19%  Similarity=0.224  Sum_probs=98.5

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  286 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~  286 (438)
                      .+++++.+++++.+++++|.+++++.+||+|++  .++++|+||..|+....  .         ...++.+    +|++.
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--~---------~~~~V~e----IMt~~  172 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--D---------RETKLSE----VMTSD  172 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--c---------cCCcHHH----HhccC
Confidence            678999999999999999999999999999873  27999999999995421  1         3567888    78762


Q ss_pred             -CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          287 -EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       287 -~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                       +++++.+++++.++++.|.+++...+||+|+ +++++|+||.+|+++.+..
T Consensus       173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhC
Confidence             2789999999999999999999999999997 7899999999999988754

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.15  E-value=6.7e-10  Score=90.11  Aligned_cols=105  Identities=16%  Similarity=0.354  Sum_probs=90.5

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      .+++++..+.++.++++.|.+.+...+||+|+  ++++|+++..|++..   .         ...++.+    +|.. .+
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~---~---------~~~~~~~----~~~~-~~   62 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK---D---------PDETVEE----IMSK-DL   62 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc---C---------ccccHHH----hCCC-CC
Confidence            45788999999999999998888889999985  799999999998752   1         2345777    6765 78


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.+++++.++++.|.+++...+||+++ +|+++|+++..|++.
T Consensus        63 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~  106 (107)
T cd04610          63 VVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR  106 (107)
T ss_pred             eEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence            89999999999999999999999999997 789999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.14  E-value=7.2e-10  Score=90.27  Aligned_cols=100  Identities=16%  Similarity=0.336  Sum_probs=87.1

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE  287 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~  287 (438)
                      ....+.+++++.++.+.|.+.+...+||+|+.  .++++|+++..|+.+....                     +|.. +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------~m~~-~   60 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------YIDP-S   60 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------hccC-C
Confidence            46788999999999999999989999999972  2899999999999775531                     2454 7


Q ss_pred             ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       288 vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      +.++.+++++.++++.|.+++...+||++  +|+++|++|.+|++.
T Consensus        61 ~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~  104 (105)
T cd04591          61 PFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK  104 (105)
T ss_pred             CceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence            88999999999999999999999999996  789999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.12  E-value=5.4e-10  Score=114.34  Aligned_cols=112  Identities=23%  Similarity=0.436  Sum_probs=97.8

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCC--CCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT--PDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  286 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~--~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~  286 (438)
                      .+++++++++++.+++++|.+++++++||+|++.  ++++|+||.+|+.....           ...++.+    +|++.
T Consensus        88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-----------~~~~V~d----vm~~~  152 (450)
T TIGR01302        88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD-----------KGKPVSE----VMTRE  152 (450)
T ss_pred             cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-----------CCCCHHH----hhCCC
Confidence            5789999999999999999999999999999752  58999999999964211           2357888    77723


Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +++++.+++++.++++.|.+++...+||+|+ +|+++|+||.+|++..+.
T Consensus       153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRRK  201 (450)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhccc
Confidence            7999999999999999999999999999998 899999999999998754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=1.2e-09  Score=94.10  Aligned_cols=115  Identities=23%  Similarity=0.351  Sum_probs=92.6

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC-CCc-c--------------------
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG-RDW-F--------------------  267 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~-~~~-~--------------------  267 (438)
                      +++++.+++++.++++.|.+.++..+||+|+  ++++|+++..|+.+++..... ... .                    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET   79 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence            4778999999999999999999999999996  799999999999887753210 000 0                    


Q ss_pred             ----cccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          268 ----DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       268 ----~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                          ......++.+    +|.. ++.++.+++++.+++..|.+.+.+.+||++.  ++++|+++.+|++.
T Consensus        80 ~~~~~~~~~~~v~~----~~~~-~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~  142 (143)
T cd04634          80 KRALTDAGKMKVRD----IMTK-KVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHhcCCHHH----HcCC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence                0012334556    5665 7899999999999999999999999999984  89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.11  E-value=1.2e-09  Score=112.70  Aligned_cols=122  Identities=20%  Similarity=0.311  Sum_probs=100.9

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      +...+++++|.    .++.++.+++++.++++.|.+++++.+||+|++ ++++|+||..|+.+.+....  .    ....
T Consensus       332 l~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~--~----~~~~  400 (454)
T TIGR01137       332 LKNATVKDLHL----PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGK--A----NPDD  400 (454)
T ss_pred             hccCCHHHhCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccC--C----CcCC
Confidence            45567889998    779999999999999999999999999999976 79999999999998765421  0    0234


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  335 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l  335 (438)
                      ++.+    +|.+ ++.++++++++.++++.|.+++   .++|++ +++++|+||.+|++..+
T Consensus       401 ~v~~----im~~-~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       401 AVSK----VMSK-KFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CHHH----hcCC-CCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence            6788    7876 7889999999999999998764   345554 78999999999998875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.09  E-value=1.2e-09  Score=93.12  Aligned_cols=110  Identities=18%  Similarity=0.241  Sum_probs=82.2

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc--------ccCcHHHHhcccCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF--------RQLTVRDFMNAVVP  358 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~--------~~~~v~~~m~~~~~  358 (438)
                      ++.++.+++++.++++.|.+++++.+||+|+ +|+++|++|..|++..+.........        ....+.++|....-
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~   80 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS   80 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence            5788999999999999999999999999997 79999999999999876532221000        01124455531000


Q ss_pred             CCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCC
Q 013669          359 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE  400 (438)
Q Consensus       359 ~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g  400 (438)
                      .   .....+++++++++++.+|++.|.+++++++||+|+.+
T Consensus        81 ~---~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          81 Y---GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             h---cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence            0   00003789999999999999999999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.08  E-value=6e-10  Score=99.89  Aligned_cols=133  Identities=15%  Similarity=0.335  Sum_probs=115.6

Q ss_pred             ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      ....+++    +|-+ ...+++..+.++.+++..+.+...+++||+.++.+.+.|++-.+||+.++.....     ...+
T Consensus        65 adl~vrD----iMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~-----~F~i  135 (293)
T COG4535          65 ADLRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE-----PFDI  135 (293)
T ss_pred             HHhhHhh----hcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc-----cccH
Confidence            4557788    6655 3678999999999999999999999999998767889999999999998765322     2357


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcccc
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDN  426 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~~  426 (438)
                      ++++.             |.+.++++-.+...++-+..++.|-..|||+-| .+-|.||..||+..++++..+.|++
T Consensus       136 ~~lLR-------------Pav~VPESKrvd~lLkeFR~~RnHMAIViDEfG-gVsGLVTIEDiLEqIVGdIEDE~De  198 (293)
T COG4535         136 KELLR-------------PAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFG-GVSGLVTIEDILEQIVGDIEDEYDE  198 (293)
T ss_pred             HHhcc-------------cceecccchhHHHHHHHHHhhcCceEEEEeccC-CeeeeEEHHHHHHHHhcccccccch
Confidence            77775             889999999999999999999999999999998 9999999999999999988887765

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=2.6e-09  Score=86.72  Aligned_cols=104  Identities=27%  Similarity=0.440  Sum_probs=88.5

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCce
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVI  289 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv  289 (438)
                      ++.++.++.++.+++..|.+.+...+||++++ ++++|+++..++.+..            ...++.+    +|.. ++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~------------~~~~~~~----~~~~-~~~   63 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNP------------EEEQLAL----LMTR-DPP   63 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcc------------ccchHHH----HhcC-CCc
Confidence            47788999999999999998889999999987 8999999999996521            1124555    5665 788


Q ss_pred             EEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       290 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      ++.+++++.+++..|.+++...+||++  +++++|+++..|++.
T Consensus        64 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~~~~G~it~~d~~~  105 (106)
T cd04638          64 TVSPDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR  105 (106)
T ss_pred             eECCCCCHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHhhc
Confidence            899999999999999999999999998  479999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.06  E-value=2.6e-09  Score=88.49  Aligned_cols=113  Identities=16%  Similarity=0.272  Sum_probs=90.0

Q ss_pred             CceEEeCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          210 PFLPVATDDSMLSVLLLLSKYR-LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~-i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      ++.++.+++++.++++.|...+ .+.+||+|+  |+++|+++..|+.+.+.......   .....++.+    +|.. ++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~---~~~~~~v~~----~~~~-~~   71 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRA---LYGKKPVSE----VMDP-DP   71 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHH---HHcCCcHHH----hcCC-Cc
Confidence            4667899999999999998876 889999997  79999999999987654321000   013446777    6776 78


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCc---eEeEEeCCCCeEEEEEeHHHHHH
Q 013669          289 ITIQSNELILEAFKRMKDNNIG---GIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      .++.+++++.+++..|.+++..   ..+|+++ +|+++|+||..|++.
T Consensus        72 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~  118 (119)
T cd04598          72 LIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR  118 (119)
T ss_pred             EEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence            9999999999999999988753   3467876 799999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.05  E-value=1.3e-09  Score=103.23  Aligned_cols=119  Identities=19%  Similarity=0.268  Sum_probs=106.2

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      ..|.|+|...  .....+.+++++.+-.++-.+.+..++||+|.. .+++|++|.+|+....            .+.++.
T Consensus       188 ~~Vedi~~P~--~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~------------~~t~ie  252 (432)
T COG4109         188 ITVEDIMTPL--EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKK------------PSTTIE  252 (432)
T ss_pred             eeHHHhcccc--ccceeccccccHHHHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCC------------CCccHH
Confidence            5688888744  667889999999999999999999999999987 7999999999996521            456777


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .    +|++ +++++.+.+++..+.+.|.=.++.-+||+++ +.+++|+||++|++..+.
T Consensus       253 K----VMtk-np~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq  306 (432)
T COG4109         253 K----VMTK-NPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             H----Hhcc-CCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHH
Confidence            7    8997 8999999999999999999999999999998 899999999999998875

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.04  E-value=1.4e-09  Score=111.99  Aligned_cols=112  Identities=17%  Similarity=0.253  Sum_probs=96.7

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCC-
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSS-  285 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~-  285 (438)
                      .+++++++++++.+++++|.+++++.+||+|++  +++++|++|..|+.. .. .         ...++++    +|++ 
T Consensus       104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~-~~-~---------~~~~V~d----iMt~~  168 (495)
T PTZ00314        104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF-VK-D---------KSTPVSE----VMTPR  168 (495)
T ss_pred             cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh-cc-c---------CCCCHHH----hhCCc
Confidence            568899999999999999999999999999873  278999999999862 11 1         2457888    7864 


Q ss_pred             CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       286 ~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .+++++.+++++.+++++|.+++...+||+|+ +++++|+||.+|++....
T Consensus       169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        169 EKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNRG  218 (495)
T ss_pred             CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhccc
Confidence            36899999999999999999999999999998 899999999999987753

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.02  E-value=1.4e-09  Score=109.54  Aligned_cols=126  Identities=21%  Similarity=0.386  Sum_probs=108.7

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHc-----CCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  345 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~  345 (438)
                      ...++..    .|+. .++++.++.|+.+++..+++.     .+..+.|+|. +++++|+++.++++..  ++       
T Consensus       130 ~e~taG~----~Mt~-e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~a--~~-------  194 (451)
T COG2239         130 PEDTAGR----IMTT-EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLTA--EP-------  194 (451)
T ss_pred             Chhhhhc----ccee-eeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhcC--Cc-------
Confidence            4556666    7887 899999999999999999854     3678999998 8899999999999765  32       


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcc
Q 013669          346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHL  424 (438)
Q Consensus       346 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~  424 (438)
                      +.+++++|..            .++++.+++...++.+.+.+++.-.+||||+++ +++|+||..|++..+-.|....+
T Consensus       195 ~~~i~~im~~------------~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~-~LiG~itiDDiidvi~eEa~eDi  260 (451)
T COG2239         195 DELLKDLMED------------DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDN-RLIGIITIDDIIDVIEEEATEDI  260 (451)
T ss_pred             HhHHHHHhcc------------cceeecccCCHHHHHHHHHHhCCeecceECCCC-ceeeeeeHHHHHHHHHHHHHHHH
Confidence            3479999985            689999999999999999999999999999998 99999999999998875544433

>PRK11573 hypothetical protein; Provisional

Probab=99.02  E-value=5e-09  Score=105.94  Aligned_cols=134  Identities=14%  Similarity=0.156  Sum_probs=110.5

Q ss_pred             hhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcc
Q 013669          188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWF  267 (438)
Q Consensus       188 l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~  267 (438)
                      +..--.+...+++++|...  .+++.++.++++.++++.+.+++++++||++++..+++|++..+|++..+.....    
T Consensus       178 i~~vl~l~~~~v~eiMtPr--~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~----  251 (413)
T PRK11573        178 LLSVLDLEKVTVDDIMVPR--NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----  251 (413)
T ss_pred             HHHHhccCCCChhhcCCcc--ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc----
Confidence            3444567889999999844  8999999999999999999999999999998766789999999999876543210    


Q ss_pred             cccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          268 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       268 ~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                        .....+.+    ++.  ++..++++.++.++++.|.+++.+-..|+|+ .|...|+||..|++.-+.
T Consensus       252 --~~~~~l~~----~~r--~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeiv  311 (413)
T PRK11573        252 --FTKENMLR----AAD--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIV  311 (413)
T ss_pred             --CCHHHHHh----hcc--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHh
Confidence              01122334    343  6889999999999999999999999999998 799999999999998875

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.98  E-value=6.9e-09  Score=88.46  Aligned_cols=106  Identities=14%  Similarity=0.127  Sum_probs=79.5

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCC-ccc----ccccCCccccc-----
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-WFD----IIASQPISDLG-----  279 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~-~~~----~l~~~~v~~l~-----  279 (438)
                      .++++.+++++.+|++.|.++++.++||+|++ ++++|++|..|+++++....... ...    ......+.++-     
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~   80 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS   80 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence            47889999999999999999999999999987 89999999999998875431100 000    00011122310     


Q ss_pred             cCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeC
Q 013669          280 LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG  317 (438)
Q Consensus       280 l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~  317 (438)
                      ...|.. +++++.+++++.+|++.|.+++++++||+++
T Consensus        81 ~~~~~~-~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          81 YGGQEC-GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             hcccCC-CCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence            001334 7899999999999999999999999999985

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.97  E-value=3.3e-09  Score=101.50  Aligned_cols=129  Identities=22%  Similarity=0.357  Sum_probs=109.5

Q ss_pred             ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      ...+|+|    +|.+ .++..+..+++..++++.+....+.++|+..++-+.++|++..+|+++++.+.+.+      +-
T Consensus       198 e~~tV~D----IMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~------~k  267 (423)
T COG4536         198 ENLTVSD----IMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEF------TK  267 (423)
T ss_pred             ccceeee----eeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcc------cH
Confidence            4568899    7866 36889999999999999999999999999976557899999999999998865432      23


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  420 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~  420 (438)
                      .++++.          ..+|.+++..+++.+-+..|.+++-|.-.|||+.| .+.|+||+.||++.++++-
T Consensus       268 ~d~~~~----------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG-~i~GLVTLEDIlEEIVGdf  327 (423)
T COG4536         268 EDILRA----------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYG-DIQGLVTLEDILEEIVGDF  327 (423)
T ss_pred             hHHHHH----------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccC-cEEeeeeHHHHHHHHhccc
Confidence            344432          13789999999999999999999999999999998 9999999999999999743

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.97  E-value=2.4e-09  Score=76.84  Aligned_cols=56  Identities=27%  Similarity=0.564  Sum_probs=52.3

Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                      |+++|.+            +++++++++++.++++.|.+++++++||+|++| +++|+||.+||++++.
T Consensus         1 v~~~m~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~-~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTP------------PPITVSPDDSLEEALEIMRKNGISRLPVVDEDG-KLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBS------------SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTS-BEEEEEEHHHHHHHHH
T ss_pred             CeECCcC------------CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCC-EEEEEEEHHHHHhhhh
Confidence            4678875            899999999999999999999999999999998 9999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.90  E-value=5.8e-08  Score=99.02  Aligned_cols=135  Identities=12%  Similarity=0.204  Sum_probs=112.0

Q ss_pred             hhhhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCC
Q 013669          186 KVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD  265 (438)
Q Consensus       186 ~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~  265 (438)
                      ..+..--.+...+++++|..  +..+..++.+.++.++.+.+.+.+++++||++++.+.++|++..+|++..+.....  
T Consensus       195 ~mi~~v~~l~~~~v~eiMtP--R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--  270 (429)
T COG1253         195 EMINNVLDLDDRTVREIMTP--RTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--  270 (429)
T ss_pred             HHHHHHhccCCcEeeeEeee--cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc--
Confidence            33444556788999999994  48899999999999999999999999999999555789999999999998765421  


Q ss_pred             cccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          266 WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       266 ~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                            ......    .+.  ++..++++.++.++++.|++.+.+-..|+|+ -|.+.|+||..|++..+..
T Consensus       271 ------~~~~~~----~~~--~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         271 ------DLDLRV----LVR--PPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             ------ccchhh----ccc--CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHhC
Confidence                  011111    122  6899999999999999999999999999998 7999999999999998863

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.82  E-value=1.9e-08  Score=72.05  Aligned_cols=56  Identities=23%  Similarity=0.457  Sum_probs=52.2

Q ss_pred             hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhh
Q 013669          199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE  259 (438)
Q Consensus       199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~  259 (438)
                      |+++|.    .+++++++++++.++++.|.+++++++||+|++ ++++|++|.+|+++++.
T Consensus         1 v~~~m~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMT----PPPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSB----SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred             CeECCc----CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence            567888    789999999999999999999999999999988 89999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.75  E-value=5e-07  Score=89.84  Aligned_cols=156  Identities=19%  Similarity=0.306  Sum_probs=112.8

Q ss_pred             CEEEEEcCCCCCEEEEEeHHHHHHHh-----hcCCCC-CcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHH
Q 013669          233 RNVPIIEPGTPDIKNYITQSAVVQGL-----EGCKGR-DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD  306 (438)
Q Consensus       233 ~~lpVvd~~~~~v~Giit~~Di~~~l-----~~~~~~-~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~  306 (438)
                      .++.++++  |+++..-+..+++..-     ....+. .....+....+.+    .+.. ......++.+..++++.|..
T Consensus       198 drI~vl~~--G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~  270 (363)
T TIGR01186       198 DRIVIMKA--GEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQ----RMNT-GPITKTADKGPRSALQLMRD  270 (363)
T ss_pred             CEEEEEeC--CEEEeeCCHHHHHhCcccHHHHHHhhccchhcccchhhHhh----hccc-cceeecCCCCHHHHHHHHHh
Confidence            56777765  7888887877775421     100000 0000011111111    1222 33456677789999999999


Q ss_pred             cCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHH
Q 013669          307 NNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLA  386 (438)
Q Consensus       307 ~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~  386 (438)
                      .+...+.|++. ++++.|.++..++..++..        ..++.+.+..            ...++.++++|.+++..|.
T Consensus       271 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~  329 (363)
T TIGR01186       271 ERVDSLYVVDR-QNKLVGVVDVESIKQARKK--------AQGLQDVLID------------DIYTVDAGTLLRETVRKVL  329 (363)
T ss_pred             cCCceEEEEcC-CCCEEEEEeHHHHHHHhhc--------CCchhhhhcc------------CCceECCCCcHHHHHHHHH
Confidence            99999999997 8999999999999876542        2246777764            6788999999999999999


Q ss_pred             hCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          387 SKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       387 ~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      +++.. +||+|++| +++|+||..++++.+..
T Consensus       330 ~~~~~-~~v~~~~~-~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       330 KAGIK-VPVVDEDQ-RLVGIVTRGSLVDALYD  359 (363)
T ss_pred             hCCCC-EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence            99988 99999998 99999999999999975

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.71  E-value=3e-08  Score=89.10  Aligned_cols=137  Identities=11%  Similarity=0.194  Sum_probs=114.2

Q ss_pred             hhhhhhhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC
Q 013669          183 DFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK  262 (438)
Q Consensus       183 ~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~  262 (438)
                      +-...+..--.+...+|+|||-..  .+.+++..+.++.+++..+.+...+++||+.++...+.||+-.+|+++++....
T Consensus        53 dt~~mlEGvm~iadl~vrDiMIPR--SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~  130 (293)
T COG4535          53 DTLDMLEGVMDIADLRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDA  130 (293)
T ss_pred             hHHHHHHHHHHHHHhhHhhhcccH--HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCc
Confidence            334444444445667899999844  789999999999999999999999999999888789999999999999986542


Q ss_pred             CCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          263 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       263 ~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                              ....+.+    +..  +.+.|+++-.+...++-++.++.+..+|+|+ -|.+-|++|..|++..+.
T Consensus       131 --------~~F~i~~----lLR--Pav~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIV  189 (293)
T COG4535         131 --------EPFDIKE----LLR--PAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIV  189 (293)
T ss_pred             --------ccccHHH----hcc--cceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHh
Confidence                    2235566    332  6899999999999999999999999999998 789999999999998875

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.70  E-value=1.2e-07  Score=95.87  Aligned_cols=127  Identities=13%  Similarity=0.295  Sum_probs=109.3

Q ss_pred             hhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC
Q 013669          188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK  262 (438)
Q Consensus       188 l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~  262 (438)
                      +.+...|...+++.+|+    .+++.+.++.|+.+++..+.+.     .+..+.|+|.+ +++.|+++.++++..   . 
T Consensus       123 v~~~l~y~e~taG~~Mt----~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll~a---~-  193 (451)
T COG2239         123 VRQLLSYPEDTAGRIMT----TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLLTA---E-  193 (451)
T ss_pred             HHHhcCCChhhhhccce----eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHhcC---C-
Confidence            33445566778999999    7799999999999999999854     46779999988 799999999998641   1 


Q ss_pred             CCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          263 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       263 ~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                              .+.++++    +|.+ .++++.+++.-+++.+.+.+++.-++||||+ +++++|+||..|++..+.+
T Consensus       194 --------~~~~i~~----im~~-~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         194 --------PDELLKD----LMED-DVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             --------cHhHHHH----Hhcc-cceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHHHH
Confidence                    4567888    7887 6999999999999999999999999999998 8999999999999988753

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.66  E-value=2.8e-07  Score=88.55  Aligned_cols=168  Identities=14%  Similarity=0.178  Sum_probs=126.1

Q ss_pred             CCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccc
Q 013669          192 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA  271 (438)
Q Consensus       192 ~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~  271 (438)
                      ..+...+|+|+|...  ..+..++.+++..+.++.+...-..++|++.++-..++|++..+|+++++.++..   +   .
T Consensus       195 LDLe~~tV~DIMvpR--~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~---~---~  266 (423)
T COG4536         195 LDLENLTVSDIMVPR--NEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE---F---T  266 (423)
T ss_pred             cccccceeeeeeccc--cceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc---c---c
Confidence            446668999999844  8899999999999999999999999999998876789999999999999987632   1   1


Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  351 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~  351 (438)
                      ...+..    ..  .++..+++.+++.+-+..|.+++-+.-.|||+ -|.+.|++|..|++.-+.-.  |.+.......+
T Consensus       267 k~d~~~----~a--~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVGd--ftde~d~~~~e  337 (423)
T COG4536         267 KEDILR----AA--DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVGD--FTDEHDTLAKE  337 (423)
T ss_pred             HhHHHH----Hh--cCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhcc--ccccCcccchh
Confidence            112222    11  36899999999999999999999888889998 89999999999999876531  21222223333


Q ss_pred             HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHH
Q 013669          352 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLA  386 (438)
Q Consensus       352 ~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~  386 (438)
                      +..+          ...-+.++.+.++.+.-+.|-
T Consensus       338 v~~q----------~dgs~iidGs~~iRdlNr~l~  362 (423)
T COG4536         338 VIPQ----------SDGSFIIDGSANVRDLNRALD  362 (423)
T ss_pred             hccc----------CCCcEEEeCCCcHHHHHHhcC
Confidence            3332          124466777777777655543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=9.1e-07  Score=89.07  Aligned_cols=105  Identities=19%  Similarity=0.241  Sum_probs=90.4

Q ss_pred             EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCe
Q 013669          291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPI  370 (438)
Q Consensus       291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~  370 (438)
                      ..++.+..+++..|...+...+.|+|. +++++|+++..++......        ..++.+.+..            ...
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~------------~~~  348 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ--------QQGLDAALID------------APL  348 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc--------CCchhhhhcc------------CCc
Confidence            446678899999999999999999998 8999999999999776432        2246666653            678


Q ss_pred             EeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          371 TCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       371 ~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      ++.++++|.+++..|.+.... +||||++| +++|+||..++++.+..
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        349 AVDAQTPLSELLSHVGQAPCA-VPVVDEDQ-QYVGIISKGMLLRALDR  394 (400)
T ss_pred             eeCCCCCHHHHHHHHHhCCCc-EEEECCCC-cEEEEEEHHHHHHHHHh
Confidence            999999999999999998766 99999998 99999999999999975

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.60  E-value=1.1e-07  Score=91.92  Aligned_cols=109  Identities=27%  Similarity=0.348  Sum_probs=95.8

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  364 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  364 (438)
                      +++.++|+.++.++++....+++..+||.++.  ..+++|+||.+|+-.+ .+       ...++.++|..         
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~-------~~~~~~~vmt~---------  179 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-ED-------NSLLVSDVMTK---------  179 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hc-------ccchhhhhccc---------
Confidence            57888999999999999999999999999731  3689999999999877 21       24578899986         


Q ss_pred             CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          365 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       365 ~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                         ++++.....+|.++-+.|.+.+...+||||++| +++.+|+++||.+.-
T Consensus       180 ---~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~g-elva~~~rtDl~k~~  227 (503)
T KOG2550|consen  180 ---NPVTGAQGITLKEANEILKKIKKGKLPVVDDKG-ELVAMLSRTDLMKNR  227 (503)
T ss_pred             ---ccccccccccHHHHHHHHHhhhcCCcceeccCC-ceeeeeehhhhhhhc
Confidence               558999999999999999999999999999998 999999999998853

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.36  E-value=7.9e-06  Score=81.33  Aligned_cols=108  Identities=18%  Similarity=0.338  Sum_probs=91.2

Q ss_pred             ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669          211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  290 (438)
Q Consensus       211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~  290 (438)
                      .....++.+..+++..|...+...+.|+|.+ +++.|+++..++..++...           ..+.+    .+.. .+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~~-~~~~  314 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-----------QGLQD----VLID-DIYT  314 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-----------Cchhh----hhcc-CCce
Confidence            3456677789999999999999999999987 8999999999997766432           23555    4544 6778


Q ss_pred             EcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          291 IQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       291 v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      +.+++++.+++..|.+++.. +||+|+ +|+++|+|+..+++..+..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       315 VDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             ECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence            99999999999999999998 999998 8999999999999998763

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.35  E-value=1.1e-06  Score=85.17  Aligned_cols=110  Identities=22%  Similarity=0.244  Sum_probs=95.4

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  286 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~  286 (438)
                      .+++++.|+.++.++++....+++..+||.++.  .++++|+||.+|+- ++.+          ....+.+    +|++ 
T Consensus       116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~-f~~~----------~~~~~~~----vmt~-  179 (503)
T KOG2550|consen  116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQ-FLED----------NSLLVSD----VMTK-  179 (503)
T ss_pred             cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhh-hhhc----------ccchhhh----hccc-
Confidence            457889999999999999999999999999754  36899999999983 3422          3467788    7887 


Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  335 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l  335 (438)
                      +.++.+...++.++-+++.+.+-..+||||+ +|+++.+|++.||.+.-
T Consensus       180 ~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  180 NPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKNR  227 (503)
T ss_pred             ccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhhc
Confidence            5689999999999999999999999999998 89999999999998764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.24  E-value=1.3e-05  Score=80.75  Aligned_cols=107  Identities=16%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             EEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceEEc
Q 013669          213 PVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQ  292 (438)
Q Consensus       213 ~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~  292 (438)
                      ...++.+..+++..|...+...+.|+|.+ +++.|+++..++.+.....           ..+.+    .+.. ...++.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----------~~~~~----~~~~-~~~~~~  351 (400)
T PRK10070        289 RKTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-----------QGLDA----ALID-APLAVD  351 (400)
T ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-----------Cchhh----hhcc-CCceeC
Confidence            34467789999999999999999999987 8999999999997665421           23444    3444 678899


Q ss_pred             CCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013669          293 SNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  338 (438)
Q Consensus       293 ~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~  338 (438)
                      +++++.+++..|.+.... +||+|+ +|+++|+|+..+++..+...
T Consensus       352 ~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        352 AQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             CCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence            999999999999997766 999998 89999999999999988643

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.21  E-value=2.6e-06  Score=86.60  Aligned_cols=149  Identities=23%  Similarity=0.304  Sum_probs=107.8

Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC----CeEEEEEeHHHHHHHhcCCccccc----
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ----KKIVGNVSIRDIRHLLLKPELFSN----  343 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~----~~lvGiIs~~Dl~~~l~~~~~~~~----  343 (438)
                      +..+++    +|++ +++++..-+.+..+.+.+....++.+||+|+..    +++.|+|-++.++.++.+....+.    
T Consensus       581 ~L~a~e----v~~~-pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  581 NLTAGE----VMSK-PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             hhhHhh----hccC-CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            456677    7887 999999999999999999999999999998532    478999999999988865322211    


Q ss_pred             -----cccCcHHHHhcccC--CCCC----------CCC--CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEE
Q 013669          344 -----FRQLTVRDFMNAVV--PTTP----------DSG--KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV  404 (438)
Q Consensus       344 -----~~~~~v~~~m~~~~--~~~~----------~~~--~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lv  404 (438)
                           ....+.+|+..+..  ++.+          +.+  ....|.++.+++++..+..++++-+.+|+.||+..+ +++
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~-~~~  734 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTN-RVV  734 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCC-cee
Confidence                 11123333332100  0000          001  234678999999999999999999999999999988 899


Q ss_pred             EEEeHHHHHHHhhcCCCCcccc
Q 013669          405 GVITLRDVISCFIFEPPNHLDN  426 (438)
Q Consensus       405 GvIT~~DIl~~l~~e~~~~~~~  426 (438)
                      |++|++|++.+=..+...+.++
T Consensus       735 gilTR~D~~~~~~l~~~~~v~~  756 (762)
T KOG0474|consen  735 GILTRKDLARYRILGLEPHVDE  756 (762)
T ss_pred             EEEehhhhhhHHHhcccccccc
Confidence            9999999996544333334443

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.15  E-value=5.8e-06  Score=84.18  Aligned_cols=135  Identities=16%  Similarity=0.264  Sum_probs=105.3

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCC----CCEEEEEeHHHHHHHhhcCCCC----C
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT----PDIKNYITQSAVVQGLEGCKGR----D  265 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~----~~v~Giit~~Di~~~l~~~~~~----~  265 (438)
                      +.+.+++++|.    .|+++++.-..+....+.+.....+.+||+|+..    +++.|+|-.+.++..+......    .
T Consensus       579 mr~L~a~ev~~----~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  579 MRNLTAGEVMS----KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS  654 (762)
T ss_pred             hhhhhHhhhcc----CCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence            45678899999    7999999999999999999999999999999752    4789999999998777532110    0


Q ss_pred             c--c--------ccc--ccCCcccccc------------CCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCe
Q 013669          266 W--F--------DII--ASQPISDLGL------------PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK  321 (438)
Q Consensus       266 ~--~--------~~l--~~~~v~~l~l------------~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~  321 (438)
                      .  .        +++  ...+++++.+            ++|++ .+.++.+++++..++.++++-+.+++.|++. .+.
T Consensus       655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~-sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~  732 (762)
T KOG0474|consen  655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP-SPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNR  732 (762)
T ss_pred             ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC-CCcccCcccchHHHHHHHHHhcceeEEEecC-CCc
Confidence            0  0        000  0112333221            46777 7899999999999999999999999999998 778


Q ss_pred             EEEEEeHHHHHHH
Q 013669          322 IVGNVSIRDIRHL  334 (438)
Q Consensus       322 lvGiIs~~Dl~~~  334 (438)
                      ++|++|++|+...
T Consensus       733 ~~gilTR~D~~~~  745 (762)
T KOG0474|consen  733 VVGILTRKDLARY  745 (762)
T ss_pred             eeEEEehhhhhhH
Confidence            8999999999754

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.99  E-value=1.7e-05  Score=65.39  Aligned_cols=55  Identities=25%  Similarity=0.448  Sum_probs=50.2

Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                      .++.++|..            ++.++.+++++.++++.|.+.+.+.+||+|++| +++|+||..||.+
T Consensus        58 ~~v~dim~~------------~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~-~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR------------KPVTARPNDPLREALNLMHEHNIRTLPVVDDDG-TPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC------------CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEEHHHhhc
Confidence            568899874            788999999999999999999999999999988 9999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.94  E-value=3e-05  Score=52.18  Aligned_cols=47  Identities=30%  Similarity=0.511  Sum_probs=43.2

Q ss_pred             CeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          369 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       369 ~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                      +.++.+++++.++++.|.+.+.+++||+++++ +++|+++..|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEG-RLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCC-eEEEEEEHHHHHHhh
Confidence            57789999999999999999999999999887 999999999998765

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.72  E-value=8.4e-05  Score=61.15  Aligned_cols=55  Identities=18%  Similarity=0.334  Sum_probs=49.8

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ  256 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~  256 (438)
                      .+++++|.    .++..+.+++++.++++.|.+++.+.+||+|++ ++++|++|..|+.+
T Consensus        58 ~~v~dim~----~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVIN----RKPVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcC----CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            56889998    678999999999999999999999999999987 89999999999853

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.72  E-value=0.00038  Score=71.41  Aligned_cols=142  Identities=10%  Similarity=0.188  Sum_probs=100.6

Q ss_pred             hhhccCCCCCCchhhhccccCCC-CceEEeCC-CCHHHHHHHHHhCCCCEEEEE-cCCCCCEEEEEeHHHHHHHhhcCCC
Q 013669          187 VILQEEPFKSTTVRSIIKSYRWA-PFLPVATD-DSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKG  263 (438)
Q Consensus       187 ~l~~~~~~~~~~v~di~~~~~~~-~~i~v~~~-~sl~~al~~m~~~~i~~lpVv-d~~~~~v~Giit~~Di~~~l~~~~~  263 (438)
                      .+.....+.++-..++|..-+.+ +++.+..+ .++.+...+|.+..++..||+ ++++.+++|++..+|+.-.+.....
T Consensus       533 ~l~~k~e~~~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~  612 (696)
T KOG0475|consen  533 FLDSKSEFSSTLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARK  612 (696)
T ss_pred             CcccccccccchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcc
Confidence            34444555544455666644334 57777665 899999999999999988876 4555789999999999766653211


Q ss_pred             CCcccc----cc-------------cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEE
Q 013669          264 RDWFDI----IA-------------SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNV  326 (438)
Q Consensus       264 ~~~~~~----l~-------------~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiI  326 (438)
                      .+.+..    ..             ...+++    +|.. .++++....+.+.+++++.+-+.+.+.|..  +|++.|+|
T Consensus       613 ~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~----il~~-tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Gii  685 (696)
T KOG0475|consen  613 IQSFIVTTSIYFNDPSPSAVAGIPSRLDLKD----ILDM-TPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGII  685 (696)
T ss_pred             ccccceecccccCCCCccccCCCCCCcCcee----eccC-CcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeee
Confidence            110000    00             112223    4555 789999999999999999999999888887  79999999


Q ss_pred             eHHHHHHHh
Q 013669          327 SIRDIRHLL  335 (438)
Q Consensus       327 s~~Dl~~~l  335 (438)
                      |.+|++...
T Consensus       686 tkkd~l~~~  694 (696)
T KOG0475|consen  686 TKKDCLRHT  694 (696)
T ss_pred             ehHHHHHhh
Confidence            999998763

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.59  E-value=0.00066  Score=69.69  Aligned_cols=127  Identities=19%  Similarity=0.285  Sum_probs=86.5

Q ss_pred             CceEEcCC-CcHHHHHHHHHHcCCceEeEE-eCCCCeEEEEEeHHHHHHHhcCCccccc-cccCcHHHHhcccCCCCC--
Q 013669          287 EVITIQSN-ELILEAFKRMKDNNIGGIPVV-EGQQKKIVGNVSIRDIRHLLLKPELFSN-FRQLTVRDFMNAVVPTTP--  361 (438)
Q Consensus       287 ~vv~v~~~-~~l~~a~~~m~~~~~~~lpVv-d~~~~~lvGiIs~~Dl~~~l~~~~~~~~-~~~~~v~~~m~~~~~~~~--  361 (438)
                      ...+++.+ .++.+...+|.+..++.+||+ ++++..++|++.++|+...+.+...... ..+... .+.....+...  
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~  635 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGI  635 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCC
Confidence            35555555 899999999999999999887 3336789999999999776653211110 001111 11111100000  


Q ss_pred             ----C--CCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          362 ----D--SGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       362 ----~--~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                          +  ....-.++++...++...+++++.+-+++.+.| +++| ++.|+||.+|++++.
T Consensus       636 ~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v-~~~G-~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  636 PSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILV-TKNG-ILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEE-ccCC-eeEeeeehHHHHHhh
Confidence                0  012246899999999999999999999988865 5566 999999999999864

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.52  E-value=0.00034  Score=46.85  Aligned_cols=47  Identities=19%  Similarity=0.445  Sum_probs=42.6

Q ss_pred             ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh
Q 013669          211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL  258 (438)
Q Consensus       211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l  258 (438)
                      +..+.+++++.++++.|.+++.+.+||++++ ++++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence            5678999999999999999999999999987 7999999999997754

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.97  E-value=0.016  Score=58.18  Aligned_cols=144  Identities=11%  Similarity=0.089  Sum_probs=88.5

Q ss_pred             CEEEEEcCCCCCEEEEEeHHHHHHH-----hhcCCCCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHc
Q 013669          233 RNVPIIEPGTPDIKNYITQSAVVQG-----LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN  307 (438)
Q Consensus       233 ~~lpVvd~~~~~v~Giit~~Di~~~-----l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~  307 (438)
                      .++.++++  |+++..-+..+++..     ....  ....+...-.+..+    +|.+  ...+...+.. .+++.   +
T Consensus       233 DrI~vl~~--G~iv~~g~~~ei~~~p~~~~~~~~--~~~~~~~~~l~a~~----~m~~--~~~~~~~~~~-~~~~~---~  298 (382)
T TIGR03415       233 NRIAIMEG--GRIIQHGTPEEIVLNPANDYVADF--VAHTNPLNVLTARS----LMRP--LTDLEHVDGG-WCVSD---R  298 (382)
T ss_pred             CEEEEEEC--CEEEEecCHHHHhhCcchHHHHHH--hcccCcccceeHHH----Hhcc--cccccccCcc-hhhhh---c
Confidence            45666654  678777777776431     1110  00001112223344    5643  3333222222 44433   7


Q ss_pred             CCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHh
Q 013669          308 NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLAS  387 (438)
Q Consensus       308 ~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~  387 (438)
                      +.+.+.|+|  .    |+++..+...+....      ...++.+ +..            ...++++++++.+++..+.+
T Consensus       299 ~~~~~~~~~--~----~~~~~~~~~~~~~~~------~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~  353 (382)
T TIGR03415       299 RDTWLFTID--K----QVRRRDAKLPVQAWA------AEQEVES-LEA------------APTVINPDTLMRDVLAARHR  353 (382)
T ss_pred             ccceeEeec--c----ceecccchHhHhhcc------cccchhh-hcc------------cCcccCCCCcHHHHHHHHhc
Confidence            788889998  3    788877765543311      1223555 332            67889999999999999998


Q ss_pred             CCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          388 KSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       388 ~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .+. -++|+|+ | +++|+|+..+++..+..
T Consensus       354 ~~~-~~~v~~~-~-~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       354 TGG-AILLVEN-G-RIVGVIGDDNIYHALLG  381 (382)
T ss_pred             CCC-CeEEeeC-C-eEEEEEeHHHHHHHHhc
Confidence            874 4889886 6 99999999999998863

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.38  E-value=0.006  Score=58.36  Aligned_cols=157  Identities=17%  Similarity=0.207  Sum_probs=103.4

Q ss_pred             CHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccc---ccCCccccccCCCCCCC-ceEEcCC
Q 013669          219 SMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII---ASQPISDLGLPFMSSDE-VITIQSN  294 (438)
Q Consensus       219 sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l---~~~~v~~l~l~~m~~~~-vv~v~~~  294 (438)
                      .+.+|+++     -+++.+..+  |+++.+=|..+|+..-...+-...+..+   .-.+..+    +|...+ ...-.+.
T Consensus       224 DLdEAlri-----G~rIaimkd--G~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~----IM~~~~~~~~~~~~  292 (386)
T COG4175         224 DLDEALRI-----GDRIAIMKD--GEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKD----IMRRPDLLIRKTPG  292 (386)
T ss_pred             CHHHHHhc-----cceEEEecC--CeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHH----hhcccccccccccc
Confidence            45666632     245666664  8999999999987432211101111111   1223344    454211 1122222


Q ss_pred             CcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCCCeEeCC
Q 013669          295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKL  374 (438)
Q Consensus       295 ~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~  374 (438)
                      ..-..+++.+.......+.+++. .++.+|+++..++...                 .+.            .++.++..
T Consensus       293 ~~~~~al~~~~~~~~~~~~~~~~-~~~~~g~v~~~~~~~~-----------------~~~------------~~~~~v~~  342 (386)
T COG4175         293 DGPRVALKLLRDEGREYGYAVDR-GNKFVGVVSIDSLVKA-----------------ALI------------DDVLTVDA  342 (386)
T ss_pred             cccchhhhhhhhccchhhHHHhc-cCceeeEEeccchhcc-----------------ccc------------ccccccCc
Confidence            33346778888888777777775 7889999998886543                 122            26778999


Q ss_pred             CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          375 ESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       375 ~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      ++++.+.+..+.+... .++|+|+++ +++|+|+...++.++..
T Consensus       343 d~~~~~~~~~~~~~~~-p~aVvde~~-r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         343 DTPLSEILARIRQAPC-PVAVVDEDG-RYVGIISRGELLEALAR  384 (386)
T ss_pred             cchHHHHHHHHhcCCC-ceeEEcCCC-cEEEEecHHHHHHHHhc
Confidence            9999999999888875 578999998 99999999999999875

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.01  E-value=0.18  Score=50.75  Aligned_cols=110  Identities=19%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      .+-.++.++|.    ........+.+  .+++.   ++...+.|+|.      |+++..+.......+.         ..
T Consensus       271 ~~~l~a~~~m~----~~~~~~~~~~~--~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~---------~~  326 (382)
T TIGR03415       271 LNVLTARSLMR----PLTDLEHVDGG--WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAA---------EQ  326 (382)
T ss_pred             ccceeHHHHhc----ccccccccCcc--hhhhh---cccceeEeecc------ceecccchHhHhhccc---------cc
Confidence            34456778885    21222222222  34433   67888899885      6787777655443221         12


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .+.++     .. .+.++++++++.+++..+.+.+.. ++|+|  +|+++|+|+..+++..+.
T Consensus       327 ~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       327 EVESL-----EA-APTVINPDTLMRDVLAARHRTGGA-ILLVE--NGRIVGVIGDDNIYHALL  380 (382)
T ss_pred             chhhh-----cc-cCcccCCCCcHHHHHHHHhcCCCC-eEEee--CCeEEEEEeHHHHHHHHh
Confidence            33331     22 577889999999999999887754 88888  599999999999998864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.84  E-value=0.058  Score=51.84  Aligned_cols=111  Identities=16%  Similarity=0.255  Sum_probs=81.5

Q ss_pred             CCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCc
Q 013669          196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  275 (438)
Q Consensus       196 ~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v  275 (438)
                      -.+..++|..+  .+.+.-.+...-..++..+.......+.+++.. ++.+|+++..+++..                  
T Consensus       273 VltA~~IM~~~--~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-~~~~g~v~~~~~~~~------------------  331 (386)
T COG4175         273 VLTAKDIMRRP--DLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-NKFVGVVSIDSLVKA------------------  331 (386)
T ss_pred             eeeHHHhhccc--ccccccccccccchhhhhhhhccchhhHHHhcc-CceeeEEeccchhcc------------------
Confidence            35677888732  333333344455567888887777777777754 779999988776542                  


Q ss_pred             cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                       .     +.. .+.++..++++.+.+..+.+... .++|+|+ +++++|+++...++.++.
T Consensus       332 -~-----~~~-~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         332 -A-----LID-DVLTVDADTPLSEILARIRQAPC-PVAVVDE-DGRYVGIISRGELLEALA  383 (386)
T ss_pred             -c-----ccc-cccccCccchHHHHHHHHhcCCC-ceeEEcC-CCcEEEEecHHHHHHHHh
Confidence             1     122 67788899999999988887664 5899998 899999999999999875

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.53  E-value=0.28  Score=52.08  Aligned_cols=61  Identities=15%  Similarity=0.173  Sum_probs=51.3

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCC-CCEEEEEeHHHHHHHhhcC
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGT-PDIKNYITQSAVVQGLEGC  261 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~-~~v~Giit~~Di~~~l~~~  261 (438)
                      ..|.++|-    +++..+..++|..+.-+.+....++.+|+||+.+ .-++|.|..+.+..++..+
T Consensus       588 v~VE~iMV----~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~  649 (931)
T KOG0476|consen  588 VKVEHIMV----TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRH  649 (931)
T ss_pred             EEeeeecc----ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhh
Confidence            45678888    8899999999999999988877799999998753 3489999999999888653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=92.58  E-value=0.58  Score=43.88  Aligned_cols=111  Identities=15%  Similarity=0.132  Sum_probs=70.4

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC---------C-ccccccccCcHHHHhccc
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK---------P-ELFSNFRQLTVRDFMNAV  356 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~---------~-~~~~~~~~~~v~~~m~~~  356 (438)
                      .++.|+.|  +.+|+++-     .++.|.+  +|+++-+-+..+++..-.+         . ..+..+....+.+.+...
T Consensus       188 TivfVTHD--idEA~kLa-----dri~vm~--~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~  258 (309)
T COG1125         188 TIVFVTHD--IDEALKLA-----DRIAVMD--AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG  258 (309)
T ss_pred             EEEEEecC--HHHHHhhh-----ceEEEec--CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence            46666554  46777543     4688888  6999999998887643211         0 111222333445554421


Q ss_pred             CCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          357 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       357 ~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                      ..  .      .--.........+++..+...+...+||+|++| +++|+||..+|+..
T Consensus       259 ~~--~------~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g-~~~G~vt~~~l~~~  308 (309)
T COG1125         259 EP--A------DGEPLLEGFVDRDALSDFLARGRSVLPVVDEDG-RPLGTVTRADLLDE  308 (309)
T ss_pred             cc--c------cCCccccchhhHHHHHHHHhcCCceeEEECCCC-cEeeEEEHHHHhhh
Confidence            00  0      011233344455688888899999999999998 99999999999875

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=86.59  E-value=1.1  Score=46.71  Aligned_cols=125  Identities=18%  Similarity=0.258  Sum_probs=85.0

Q ss_pred             cCCccccccCCCCC-CCceEEcCCCcHH-HHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          272 SQPISDLGLPFMSS-DEVITIQSNELIL-EAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       272 ~~~v~~l~l~~m~~-~~vv~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      .+.+++    +|++ +.++.+..+..+. +......+++++++||.+.+....+|..=...+..+... +.  .+...++
T Consensus       203 ek~~~e----vmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~-~~--~~~~~~v  275 (498)
T KOG2118|consen  203 EKLVGE----VMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQV-EV--PLEPLPV  275 (498)
T ss_pred             HHHHHH----hccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcc-cc--ccccccc
Confidence            345555    5665 3566667777776 556667789999999998633334443222222222211 11  3345677


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .+++..            +...++.++++.+.++.+.+.+.|.+.|.+. . .-+++++..|+ .....
T Consensus       276 ~~~~~~------------~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~-~-~~~~~~~l~~~-~~~~~  329 (498)
T KOG2118|consen  276 SESALL------------RLPLVPENMPLLDLLNEFQKGKSHMAVVRNG-H-VDIFVLTLEDL-EEVVK  329 (498)
T ss_pred             hhhhcc------------ccccCCCcccHHHHHHHHhhhhceeEEEecC-C-cceeeEeccch-hhhcc
Confidence            888764            7888999999999999999999888877774 3 68999999998 55443

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=86.02  E-value=4.2  Score=38.34  Aligned_cols=111  Identities=14%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHh-----hcCC--CCCcccccccCCccccccCCC
Q 013669          211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL-----EGCK--GRDWFDIIASQPISDLGLPFM  283 (438)
Q Consensus       211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l-----~~~~--~~~~~~~l~~~~v~~l~l~~m  283 (438)
                      ++.|.  ..+.+|+++-     .++.|.+.  |+++.+-+..++++.-     ....  +...+..+...++.+.   .+
T Consensus       189 ivfVT--HDidEA~kLa-----dri~vm~~--G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~---~~  256 (309)
T COG1125         189 IVFVT--HDIDEALKLA-----DRIAVMDA--GEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADA---VR  256 (309)
T ss_pred             EEEEe--cCHHHHHhhh-----ceEEEecC--CeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHh---hc
Confidence            44444  3467787543     56888885  8999999987775421     1110  1112222233333331   11


Q ss_pred             CCC--CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669          284 SSD--EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  334 (438)
Q Consensus       284 ~~~--~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  334 (438)
                      +..  .--.+.......+++..+...+...+||+|+ +|+++|.+|..+++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~~  308 (309)
T COG1125         257 RGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLDE  308 (309)
T ss_pred             ccccccCCccccchhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhhh
Confidence            110  0111223344455777788888899999998 9999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	438
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-44
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-22
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-17
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	6e-13
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-42
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	1e-12
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	8e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	5e-09
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-36
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	8e-15
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-11
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-32
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-07
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-29
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	8e-07
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	9e-23
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-21
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-17
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-13
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	9e-21
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	6e-12
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-20
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-19
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-10
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-19
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-08
1pvm_A	184	Conserved hypothetical protein TA0289; structural	8e-04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-19
1pbj_A	125	Hypothetical protein; structural genomics, domain,	5e-12
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-19
4fry_A	157	Putative signal-transduction protein with CBS DOM;	4e-19
4fry_A	157	Putative signal-transduction protein with CBS DOM;	3e-10
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	7e-19
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-12
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	1e-18
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-10
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-18
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	8e-10
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-05
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-18
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	4e-09
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	3e-18
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-08
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	5e-18
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	1e-09
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	5e-18
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-09
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	8e-06
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	8e-18
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	4e-07
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	9e-18
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	4e-10
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-17
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	4e-09
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	3e-05
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-17
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-10
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	6e-17
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	7e-16
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	4e-08
1vr9_A	213	CBS domain protein/ACT domain protein; structural	4e-15
1vr9_A	213	CBS domain protein/ACT domain protein; structural	3e-08
1vr9_A	213	CBS domain protein/ACT domain protein; structural	6e-05
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	5e-15
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	6e-09
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	9e-15
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	1e-06
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-12
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	6e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	9e-12
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	4e-11
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	3e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	9e-10
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
3fio_A	70	A cystathionine beta-synthase domain protein fused	4e-09
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	2e-08
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	3e-07
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	6e-07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	6e-07
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	1e-06
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	2e-06
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	2e-05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	1e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	2e-04
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	5e-04

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  155 bits (394), Expect = 4e-44
 Identities = 42/245 (17%), Positives = 101/245 (41%), Gaps = 12/245 (4%)

Query: 179 RLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII 238
           R ++     I + E  K  T R +     + P + ++ + S+   +  L + ++  +P+I
Sbjct: 96  RYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVI 155

Query: 239 EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELIL 298
           +P + +    +T   +++ L+            S+ + +L +   +   +  +++   + 
Sbjct: 156 DPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQI--GTYANIAMVRTTTPVY 213

Query: 299 EAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVP 358
            A      + +  +PVV+ ++ ++V   S  D+ +L  +     N   ++V   +     
Sbjct: 214 VALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAAEK--TYNNLDVSVTKALQHRSH 270

Query: 359 TTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF 418
                      + C L  TL ++I+ L    VHR+ VV  E   V G+++L D++   + 
Sbjct: 271 YFE------GVLKCYLHETLEAIINRLVEAEVHRLVVV-DEHDVVKGIVSLSDILQALVL 323

Query: 419 EPPNH 423
                
Sbjct: 324 TGGEK 328

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 95.4 bits (237), Expect = 5e-22
 Identities = 22/153 (14%), Positives = 64/153 (41%), Gaps = 1/153 (0%)

Query: 284 SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN 343
           +S +++   ++  + +AF  +  N +   P+ + +++  VG ++I D  ++L +    + 
Sbjct: 43  TSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL 102

Query: 344 FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV 403
            +   + +                P +     ++L   + SL    +HR+ V+  E    
Sbjct: 103 VQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNT 162

Query: 404 VGVITLRDVIS-CFIFEPPNHLDNYFGFSVKDL 435
           + ++T + ++    +F        +   S+++L
Sbjct: 163 LYILTHKRILKFLKLFITEFPKPEFMSKSLEEL 195

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 82.3 bits (203), Expect = 1e-17
 Identities = 36/256 (14%), Positives = 78/256 (30%), Gaps = 15/256 (5%)

Query: 174 PTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLR 233
              +    E    V       KS     +I +      +   T   +      L    +R
Sbjct: 14  NEHSQETPESNSSVYTTF--MKSHRCYDLIPTSS--KLVVFDTSLQVKKAFFALVTNGVR 69

Query: 234 NVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--FDIIASQPISDLGLPFMSS--DEVI 289
             P+ +         +T +  +  L             +    I      ++      ++
Sbjct: 70  AAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLV 129

Query: 290 TIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV 349
            I  N  + +A   +  N I  +PV++ +    +  ++ + I        L     +   
Sbjct: 130 CISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILK-----FLKLFITEFPK 184

Query: 350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITL 409
            +FM+  +      G        +  + +   +       V  + VV  E+  VV + + 
Sbjct: 185 PEFMSKSLEELQI-GTYANIAMVRTTTPVYVALGIFVQHRVSALPVV-DEKGRVVDIYSK 242

Query: 410 RDVISCFIFEPPNHLD 425
            DVI+    +  N+LD
Sbjct: 243 FDVINLAAEKTYNNLD 258

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 68.4 bits (167), Expect = 6e-13
 Identities = 40/287 (13%), Positives = 96/287 (33%), Gaps = 17/287 (5%)

Query: 57  DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 116
              +  A   L    + +AP+           K+ ++G++  +  I  +    + A    
Sbjct: 53  SLQVKKAFFALVTNGVRAAPLWDSK-------KQSFVGMLTITDFINILHRYYKSALVQI 105

Query: 117 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLA-AEKGAGKDAPT 175
                                 L    P A     V++        L   +  +G     
Sbjct: 106 YELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYI 165

Query: 176 AADRLHEDFYKVILQEEPFKSTTVRSI--IKSYRWAPFLPVATDDSMLSVLLLLSKYRLR 233
              +    F K+ + E P      +S+  ++   +A    V T   +   L +  ++R+ 
Sbjct: 166 LTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVS 225

Query: 234 NVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQS 293
            +P+++     + +  ++  V+      K  +  D+  ++ +            V+    
Sbjct: 226 ALPVVDEKG-RVVDIYSKFDVINLAAE-KTYNNLDVSVTKALQHRSH--YFEG-VLKCYL 280

Query: 294 NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 339
           +E +     R+ +  +  + VV+ +   + G VS+ DI + L+L   
Sbjct: 281 HETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSDILQALVLTGG 326

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  150 bits (381), Expect = 4e-42
 Identities = 46/248 (18%), Positives = 104/248 (41%), Gaps = 23/248 (9%)

Query: 181 HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVAT--DDSMLSVLLLLSKYRLRNVPII 238
              F + I + + F+   +R + +     P   +      S++   L +SK R R +P+I
Sbjct: 87  SSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLI 146

Query: 239 ----EPGTPDIKNYITQSAVVQGL-EGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQS 293
               E G+  I + +TQ  +++ +   CK           P++ + +   S   + T   
Sbjct: 147 DVDGETGSEMIVSVLTQYRILKFISMNCKETAMLR----VPLNQMTIGTWS--NLATASM 200

Query: 294 NELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM 353
              + +  K + + NI  +P+V   +  ++      D+ HL+   +   +   L+V + +
Sbjct: 201 ETKVYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQDGDY--SNLDLSVGEAL 257

Query: 354 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI 413
                        +   TC+    L  +  ++    VHR++VV  E  ++ G+++L D++
Sbjct: 258 ------LKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVV-DENLKLEGILSLADIL 310

Query: 414 SCFIFEPP 421
           +  I++  
Sbjct: 311 NYIIYDKT 318

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 16/139 (11%), Positives = 43/139 (30%), Gaps = 8/139 (5%)

Query: 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL----KPEL 340
           S  +I       +  +   +  NNI   P+ + +  K  G +++ D  +++         
Sbjct: 31  SFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSF 90

Query: 341 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 400
                ++     +                I      +L     +++     RI ++  + 
Sbjct: 91  PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDG 150

Query: 401 ----AEVVGVITLRDVISC 415
                 +V V+T   ++  
Sbjct: 151 ETGSEMIVSVLTQYRILKF 169

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 58.7 bits (142), Expect = 8e-10
 Identities = 36/241 (14%), Positives = 77/241 (31%), Gaps = 30/241 (12%)

Query: 212 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP---------DIKNYITQSAVVQGLEGCK 262
           +       + + L LL+   + + P+ +             D  N I +           
Sbjct: 35  IVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVI-KYYYQSSSFPEA 93

Query: 263 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVV----EGQ 318
             +                     E I +     +++A   M  +    IP++    E  
Sbjct: 94  IAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG 153

Query: 319 QKKIVGNVSIRDI-RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLEST 377
            + IV  ++   I + + +  +  +  R   +              G  +   T  +E+ 
Sbjct: 154 SEMIVSVLTQYRILKFISMNCKETAMLRV-PLNQM---------TIGTWSNLATASMETK 203

Query: 378 LGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLN 437
           +  VI  LA K++  + +V   E  ++ V    DV+        ++LD     SV + L 
Sbjct: 204 VYDVIKMLAEKNISAVPIV-NSEGTLLNVYESVDVMHLIQDGDYSNLD----LSVGEALL 258

Query: 438 Q 438
           +
Sbjct: 259 K 259

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 40/300 (13%), Positives = 96/300 (32%), Gaps = 38/300 (12%)

Query: 57  DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYS---AIILWVLETAELAA 113
              +  ++ +L+  NI+SAP+             ++ G++  +    +I +  +++    
Sbjct: 40  TLFVKTSLSLLTLNNIVSAPL-------WDSEANKFAGLLTMADFVNVIKYYYQSSSFPE 92

Query: 114 AAFSVGTATAAGVGTGTVGALGA-LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKD 172
           A   +      G+                  P         A   + A  +      G+ 
Sbjct: 93  AIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET 152

Query: 173 APTAADRL--HEDFYKVILQEEPFKSTTVRSIIKSYR--WAPFLPVATDDSMLSVLLLLS 228
                  +       K I       +     + +     W+     + +  +  V+ +L+
Sbjct: 153 GSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLA 212

Query: 229 KYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLP---FMSS 285
           +  +  VPI+      + N                 D   +I     S+L L     +  
Sbjct: 213 EKNISAVPIVNSEG-TLLNVYES------------VDVMHLIQDGDYSNLDLSVGEALLK 259

Query: 286 -----DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 339
                D V T ++ + +   F  +K + +  + VV+ +  K+ G +S+ DI  +++    
Sbjct: 260 RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD-ENLKLEGILSLADILNYIIYDKT 318

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  135 bits (340), Expect = 2e-36
 Identities = 34/244 (13%), Positives = 87/244 (35%), Gaps = 24/244 (9%)

Query: 184 FYKVILQEEPFKSTTVRSIIKSYRWA-----PFLPVATDDSMLSVLLLLSKYRLRNVPII 238
           ++    + E      +  +    R           +     +    L + + R   +P+I
Sbjct: 92  YFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLI 151

Query: 239 EP----GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSN 294
           +         + + +TQ  +++                 PI DL +  ++ D + + Q  
Sbjct: 152 DQDEETHREIVVSVLTQYRILKF---VALNCRETHFLKIPIGDLNI--ITQDNMKSCQMT 206

Query: 295 ELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN 354
             +++  + +    +  +P+++ +   ++      D+  L+       N   L+V + + 
Sbjct: 207 TPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLI--KGGIYNDLSLSVGEALM 263

Query: 355 AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS 414
                           TC     L +++ ++    VHR +VV  +   +VGV+TL D++ 
Sbjct: 264 RRSDDFE------GVYTCTKNDKLSTIMDNIRKARVHRFFVV-DDVGRLVGVLTLSDILK 316

Query: 415 CFIF 418
             + 
Sbjct: 317 YILL 320

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 73.8 bits (181), Expect = 8e-15
 Identities = 37/254 (14%), Positives = 91/254 (35%), Gaps = 25/254 (9%)

Query: 194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSA 253
             S T   ++        + + T   +   L +L +  + + P+ +  T      +T + 
Sbjct: 27  LNSKTSYDVLPVS--YRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTD 84

Query: 254 VVQGL-EGCKGRDWFDIIASQPISDLG----LPFMSSDEVITIQSNELILEAFKRMKDNN 308
            +  +       D F+++    +  L        +   +  +I  +  + EA  +M ++ 
Sbjct: 85  FINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESR 144

Query: 309 IGGIPVV----EGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG 364
            G IP++    E  ++ +V  ++   I   +      ++F ++ + D             
Sbjct: 145 SGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLN---------II 195

Query: 365 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHL 424
             +   +C++ + +  VI  L    V  + ++  E   ++ V    DV+        N L
Sbjct: 196 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII-DENGYLINVYEAYDVLGLIKGGIYNDL 254

Query: 425 DNYFGFSVKDLLNQ 438
                 SV + L +
Sbjct: 255 SL----SVGEALMR 264

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 49/341 (14%), Positives = 107/341 (31%), Gaps = 42/341 (12%)

Query: 14  SSCDAYFEAIQSRKKLPHSLQETLTAAFARIPVLSFPNVPGGRDTTIPDAVKILSECNIL 73
           S      E   + + +   L    +  +  +PV S+  +       +  ++ +L + +I+
Sbjct: 8   SQEKVSIEQQLAVESIRKFLNSKTS--YDVLPV-SYRLIVLDTSLLVKKSLNVLLQNSIV 64

Query: 74  SAPVKIPDAPSSSDWKERYLGIVDYSAIILWVL------ETAELAAAAFSVGTATAAGVG 127
           SAP+             R+ G++  +  I  +       +  EL       G        
Sbjct: 65  SAPLWDSK-------TSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERAL 117

Query: 128 TGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKV 187
                   ++        A   +  + +G         E                 F  +
Sbjct: 118 GVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVAL 177

Query: 188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTPDIK 246
             +E  F    +  +                 ++ V+ +L++ R+ +VPII E G   + 
Sbjct: 178 NCRETHFLKIPIGDL-NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGY--LI 234

Query: 247 NYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLP---FMS-----SDEVITIQSNELIL 298
           N                 D   +I     +DL L     +       + V T   N+ + 
Sbjct: 235 NVYEA------------YDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLS 282

Query: 299 EAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKP 338
                ++   +    VV+    ++VG +++ DI +++LL  
Sbjct: 283 TIMDNIRKARVHRFFVVDDV-GRLVGVLTLSDILKYILLGS 322

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  118 bits (298), Expect = 4e-32
 Identities = 27/149 (18%), Positives = 65/149 (43%), Gaps = 12/149 (8%)

Query: 272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
             PI DL +  ++ D + + Q    +++  + +    +  +P+++     ++      D+
Sbjct: 7   KIPIGDLNI--ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDV 63

Query: 332 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 391
              L+K  ++++   L+V + +         S       TC     L +++ ++    VH
Sbjct: 64  LG-LIKGGIYNDLS-LSVGEAL------MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVH 115

Query: 392 RIYVVAGEEAEVVGVITLRDVISCFIFEP 420
           R +VV  +   +VGV+TL D++   +   
Sbjct: 116 RFFVV-DDVGRLVGVLTLSDILKYILLGS 143

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 22/155 (14%)

Query: 190 QEEPFKSTTVRSI-IKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPII-EPGTP- 243
           +E  F    +  + I +        + +      ++ V+ +L++ R+ +VPII E G   
Sbjct: 1   RETHFLKIPIGDLNIITQD-----NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLI 55

Query: 244 DIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD-LGLPFMSSDEVITIQSNELILEAFK 302
           ++        V+  ++G    D      S  + + L       + V T   N+ +     
Sbjct: 56  NV---YEAYDVLGLIKGGIYNDL-----SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMD 107

Query: 303 RMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLL 336
            ++   +    VV+    ++VG +++ DI +++LL
Sbjct: 108 NIRKARVHRFFVVDD-VGRLVGVLTLSDILKYILL 141

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 96.4 bits (240), Expect = 9e-23
 Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 24/221 (10%)

Query: 196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV 255
           +  VR I++       + +  +  +   +       +   PI+      + + IT+  V+
Sbjct: 83  NEPVREIMEE----NVITLKENADIDEAIETFLTKNVGGAPIVNDEN-QLISLITERDVI 137

Query: 256 QGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVV 315
           + L      +         I D    +++ D VI     E + +  + M  N    +PVV
Sbjct: 138 RALLDKIDENE-------VIDD----YITRD-VIVATPGERLKDVARTMVRNGFRRLPVV 185

Query: 316 EGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLE 375
                ++VG ++  D   LL     F++ +   VR+  N  +    +       IT K  
Sbjct: 186 SEG--RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRM----EEIMKRDVITAKEG 239

Query: 376 STLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF 416
             L  +   + +  +  + VV  E   + G+IT +DV+  F
Sbjct: 240 DKLKKIAEIMVTNDIGALPVV-DENLRIKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 93.3 bits (232), Expect = 1e-21
 Identities = 42/207 (20%), Positives = 81/207 (39%), Gaps = 24/207 (11%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGL-EGCKGRDWFDIIAS 272
           V    ++   L+ +++ + R +P++  G   +   IT   +V  +  G K     +    
Sbjct: 17  VYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHER 76

Query: 273 QPISDLGLP---FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329
             ++ +  P    M  + VIT++ N  I EA +     N+GG P+V  +  +++  ++ R
Sbjct: 77  NFLAAINEPVREIMEEN-VITLKENADIDEAIETFLTKNVGGAPIVNDEN-QLISLITER 134

Query: 330 DIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKS 389
           D+   LL     +      + D++                I       L  V  ++    
Sbjct: 135 DVIRALLDKIDENE----VIDDYITR------------DVIVATPGERLKDVARTMVRNG 178

Query: 390 VHRIYVVAGEEAEVVGVITLRDVISCF 416
             R+ VV   E  +VG+IT  D I   
Sbjct: 179 FRRLPVV--SEGRLVGIITSTDFIKLL 203

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 3/132 (2%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 341
             +   ++T+     I +A   M +N    +PVV     K+VG ++  DI   +     +
Sbjct: 9   AQNKK-IVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKY 67

Query: 342 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 401
           +  R+   R+F+ A+     +  +    IT K  + +   I +  +K+V     +  +E 
Sbjct: 68  NLIREKHERNFLAAINEPVREIME-ENVITLKENADIDEAIETFLTKNVGGA-PIVNDEN 125

Query: 402 EVVGVITLRDVI 413
           +++ +IT RDVI
Sbjct: 126 QLISLITERDVI 137

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 68.2 bits (167), Expect = 5e-13
 Identities = 43/289 (14%), Positives = 88/289 (30%), Gaps = 47/289 (16%)

Query: 57  DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAF 116
            TTI  A+  ++E      PV             + +GI+    I+   +          
Sbjct: 20  TTTIRKALMTMNENKYRRLPVVNAG-------NNKVVGIITSMDIV-DFMGGGSKYNLIR 71

Query: 117 SVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAP-- 174
                         V  +      M               A         K  G  AP  
Sbjct: 72  EKHERNFLAAINEPVREI------MEENVITLKENADIDEAIE---TFLTKNVGG-APIV 121

Query: 175 TAADRL-----HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSK 229
              ++L       D  +  L ++  ++  +   I        +     + +  V   + +
Sbjct: 122 NDENQLISLITERDVIRA-LLDKIDENEVIDDYITR----DVIVATPGERLKDVARTMVR 176

Query: 230 YRLRNVPIIEPGTP-------DIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPF 282
              R +P++  G         D    +        ++    R+    I +  + +     
Sbjct: 177 NGFRRLPVVSEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVRE----ITNVRMEE----I 228

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
           M  D VIT +  + + +  + M  N+IG +PVV+    +I G ++ +D+
Sbjct: 229 MKRD-VITAKEGDKLKKIAEIMVTNDIGALPVVDE-NLRIKGIITEKDV 275

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 86.9 bits (216), Expect = 9e-21
 Identities = 30/144 (20%), Positives = 63/144 (43%), Gaps = 24/144 (16%)

Query: 270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329
           +  + + +     M +  VI++  +  + +  K M + NIG + VV+G   K VG ++ R
Sbjct: 1   MEEEIVKEY----MKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVDGN--KPVGIITER 53

Query: 330 DIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKS 389
           DI   + K +           +FM      T         IT + +S +   +  +   +
Sbjct: 54  DIVKAIGKGKSLE----TKAEEFM------TAS------LITIREDSPITGALALMRQFN 97

Query: 390 VHRIYVVAGEEAEVVGVITLRDVI 413
           +  + VV  ++  + G+I++RD+ 
Sbjct: 98  IRHLPVV-DDKGNLKGIISIRDIT 120

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 61.8 bits (151), Expect = 6e-12
 Identities = 30/147 (20%), Positives = 64/147 (43%), Gaps = 25/147 (17%)

Query: 195 KSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ 251
           +   V+  +K+        V +   D  +  +  ++++  + +V +++   P     IT+
Sbjct: 2   EEEIVKEYMKT-------QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKP--VGIITE 52

Query: 252 SAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGG 311
             +V+ +   KG+            +    FM++  +ITI+ +  I  A   M+  NI  
Sbjct: 53  RDIVKAIG--KGKS-----LETKAEE----FMTAS-LITIREDSPITGALALMRQFNIRH 100

Query: 312 IPVVEGQQKKIVGNVSIRDIRHLLLKP 338
           +PVV+  +  + G +SIRDI   +   
Sbjct: 101 LPVVDD-KGNLKGIISIRDITRAIDDM 126

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 90.2 bits (224), Expect = 2e-20
 Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 36/255 (14%)

Query: 186 KVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDI 245
               +   F+   + +++          ++ +D + S    +++  +  + +       +
Sbjct: 9   HHHHENLYFQGMNIETLMIK----NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGL 64

Query: 246 KNYITQS----AVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAF 301
              +T       V    +    +     I++ PI D    +M+ +  +T+ +      A 
Sbjct: 65  ---LTTRDLLSTVESYCKDSCSQGDLYHISTTPIID----YMTPN-PVTVYNTSDEFTAI 116

Query: 302 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP 361
             M   N G +PVV+    K VG V+ R+   L              V+ FM+       
Sbjct: 117 NIMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYKD-----LDEIFPVKVFMST------ 164

Query: 362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPP 421
                    T   E  L   +  +  +   R+ V+  ++ +VVG++T+ + I        
Sbjct: 165 ------KVQTIYKEVRLDQAVKLMLRRGFRRLPVI-DDDNKVVGIVTVVNAIKQLAKAVD 217

Query: 422 NHLDNYFG-FSVKDL 435
               +YF    VKD+
Sbjct: 218 KLDPDYFYGKVVKDV 232

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 88.3 bits (219), Expect = 1e-19
 Identities = 34/229 (14%), Positives = 79/229 (34%), Gaps = 35/229 (15%)

Query: 192 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ 251
               +T +   +        + V       + + ++      ++P+++         +T+
Sbjct: 88  YHISTTPIIDYMTP----NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIND-KPVGIVTE 142

Query: 252 SAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGG 311
              +   +        D+    P+      FMS+  V TI     + +A K M       
Sbjct: 143 REFLLLYK--------DLDEIFPVKV----FMSTK-VQTIYKEVRLDQAVKLMLRRGFRR 189

Query: 312 IPVVEGQQKKIVGNVSIRDIRHLLLKP---ELFSNFRQLTVRDFMNAVVPTTPDSGKVNP 368
           +PV++    K+VG V++ +    L K         F    V+D M               
Sbjct: 190 LPVID-DDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVT------------N 236

Query: 369 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 417
            +T    +++      +  K +  + ++  ++  + G+IT RD++    
Sbjct: 237 LVTIDELASVNRAAAEMIVKRIGSLLIL-NKDNTIRGIITERDLLIALH 284

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 38/293 (12%), Positives = 90/293 (30%), Gaps = 51/293 (17%)

Query: 57  DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIV---DYSAIILWVLETAELAA 113
           +  +  A K ++E  I    V            E+  G++   D  + +    + +    
Sbjct: 36  EDRLGSAFKKINEGGIGRIIV----------ANEKIEGLLTTRDLLSTVESYCKDSCSQG 85

Query: 114 AAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDA 173
             + + T                    MT        T     A     +   +  G   
Sbjct: 86  DLYHISTTPIIDY--------------MTPNPVTVYNTSDEFTAIN---IMVTRNFGS-L 127

Query: 174 P--TAADRL-----HEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLL 226
           P     D+        +F  +   ++  +   V+  + +        +  +  +   + L
Sbjct: 128 PVVDINDKPVGIVTEREFLLLY--KDLDEIFPVKVFMST----KVQTIYKEVRLDQAVKL 181

Query: 227 LSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD 286
           + +   R +P+I+     +   +T    ++ L     +   D    + + D+    M ++
Sbjct: 182 MLRRGFRRLPVIDDDN-KVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDV----MVTN 236

Query: 287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 339
            ++TI     +  A   M    IG + ++      I G ++ RD+   L    
Sbjct: 237 -LVTIDELASVNRAAAEMIVKRIGSLLILNKDN-TIRGIITERDLLIALHHIL 287

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 17/132 (12%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 341
            M+S+   T+  N  + +A K M +N++ G+ V +      VG +S R I    +     
Sbjct: 14  IMNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPR--N 69

Query: 342 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 401
               ++ +R  M              P    K +  +  V   L+   + R  VV  +  
Sbjct: 70  KKPDEVPIRLVMRK------------PIPKVKSDYDVKDVAAYLSENGLERCAVV-DDPG 116

Query: 402 EVVGVITLRDVI 413
            VVG++TL D+ 
Sbjct: 117 RVVGIVTLTDLS 128

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 15/144 (10%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273
           V  + ++   + ++++  L  + + +    +    +++ ++++     + +         
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKD-DNGNDVGLLSERSIIKRFIP-RNKK----PDEV 75

Query: 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333
           PI  +    M    +  ++S+  + +    + +N +    VV+    ++VG V++ D+  
Sbjct: 76  PIRLV----MRKP-IPKVKSDYDVKDVAAYLSENGLERCAVVDDP-GRVVGIVTLTDLSR 129

Query: 334 LLLKPELFSNFRQLTVRDFMNAVV 357
            L +  +         +D+ +   
Sbjct: 130 YLSRASITDILLSHRTKDYQHLCP 153

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 13/71 (18%)

Query: 347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGV 406
           + V   MN+               T    +T+   +  +    ++ + V        VG+
Sbjct: 9   MRVEKIMNS------------NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNG-NDVGL 55

Query: 407 ITLRDVISCFI 417
           ++ R +I  FI
Sbjct: 56  LSERSIIKRFI 66

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 82.6 bits (205), Expect = 2e-19
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 20/135 (14%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 342
           M +D V TI     + +  +   +N  G   VV+      VG V+  D+   + + +  +
Sbjct: 7   MVTD-VDTIDITASLEDVLRNYVENAKGSSVVVKEG--VRVGIVTTWDVLEAIAEGDDLA 63

Query: 343 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 402
               + V + M        D       +T    +T+      +    V R+ V   E+ E
Sbjct: 64  E---VKVWEVM------ERD------LVTISPRATIKEAAEKMVKNVVWRLLVE--EDDE 106

Query: 403 VVGVITLRDVISCFI 417
           ++GVI+  D++   +
Sbjct: 107 IIGVISATDILRAKM 121

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 15/118 (12%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273
           +    S+  VL    +    +  +++ G       +T   V++ +   +G D    +A  
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGVR--VGIVTTWDVLEAIA--EGDD----LAEV 65

Query: 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
            + +     M  D ++TI     I EA ++M  N +  + V E    +I+G +S  DI
Sbjct: 66  KVWE----VMERD-LVTISPRATIKEAAEKMVKNVVWRLLVEEDD--EIIGVISATDI 116

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 82.6 bits (205), Expect = 3e-19
 Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 25/151 (16%)

Query: 263 GRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKI 322
           G D F +       D+    M++  V  +  +E +  A + M++++IG +P+      ++
Sbjct: 1   GIDPFTMT---TARDI----MNAG-VTCVGEHETLTAAAQYMREHDIGALPICG-DDDRL 51

Query: 323 VGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVI 382
            G ++ RDI    L   L  +    T  +                        +++  ++
Sbjct: 52  HGMLTDRDIVIKGLAAGL--DPNTATAGELARD------------SIYYVDANASIQEML 97

Query: 383 HSLASKSVHRIYVVAGEEAEVVGVITLRDVI 413
           + +    V R+ V+   E  +VG++T  D+ 
Sbjct: 98  NVMEEHQVRRVPVI--SEHRLVGIVTEADIA 126

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 83.1 bits (206), Expect = 4e-19
 Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 18/137 (13%)

Query: 284 SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN 343
           S   + T+  N+ + +A K M +  IG + VV+G    I G V+ RD    ++  E   +
Sbjct: 19  SGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD--DIAGIVTERDYARKVVLQER--S 74

Query: 344 FRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV 403
            +   V + M A                 +   +    +  +    +  + V+  +  ++
Sbjct: 75  SKATRVEEIMTA------------KVRYVEPSQSTDECMALMTEHRMRHLPVL--DGGKL 120

Query: 404 VGVITLRDVISCFIFEP 420
           +G+I++ D++   I + 
Sbjct: 121 IGLISIGDLVKSVIADQ 137

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 25/154 (16%), Positives = 61/154 (39%), Gaps = 31/154 (20%)

Query: 196 STTVRSI--IKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP-------DIK 246
           STTV  I   K         V  +D +   + L+++  +  + +++           D  
Sbjct: 6   STTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYA 65

Query: 247 NYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 306
                  VV      + R       +  + ++    M++  V  ++ ++   E    M +
Sbjct: 66  R-----KVVL-----QERSS----KATRVEEI----MTAK-VRYVEPSQSTDECMALMTE 106

Query: 307 NNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 339
           + +  +PV++G   K++G +SI D+ + ++   +
Sbjct: 107 HRMRHLPVLDG--GKLIGLISIGDLVKSVIADQQ 138

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 81.5 bits (202), Expect = 7e-19
 Identities = 22/129 (17%), Positives = 55/129 (42%), Gaps = 18/129 (13%)

Query: 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 344
              V+ I  ++ +  A ++M  +NIG + V++ +  K+VG ++ RD        +     
Sbjct: 16  GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE--KLVGILTERDFSRKSYLLDK--PV 71

Query: 345 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 404
           +   V++ M                    L +T    +  +    V  + V+  ++ +V+
Sbjct: 72  KDTQVKEIMTR------------QVAYVDLNNTNEDCMALITEMRVRHLPVL--DDGKVI 117

Query: 405 GVITLRDVI 413
           G++++ D++
Sbjct: 118 GLLSIGDLV 126

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 17/152 (11%), Positives = 52/152 (34%), Gaps = 30/152 (19%)

Query: 197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP-------DIKNYI 249
            TV+ +++         +  DDS+ + +  ++   +  + +++           D     
Sbjct: 6   KTVKHLLQEKGHTVVA-IGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSR-- 62

Query: 250 TQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNI 309
                         +   D      + +     M+   V  +  N    +    + +  +
Sbjct: 63  ---KSYL-----LDKPVKDT----QVKE----IMTRQ-VAYVDLNNTNEDCMALITEMRV 105

Query: 310 GGIPVVEGQQKKIVGNVSIRDI-RHLLLKPEL 340
             +PV++    K++G +SI D+ +  + + + 
Sbjct: 106 RHLPVLDD--GKVIGLLSIGDLVKDAISQHQF 135

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 23/146 (15%)

Query: 272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
             PI       M+   ++ ++ +  + EA + M + ++G + V+      +VG  +  DI
Sbjct: 6   KAPIKVY----MTKK-LLGVKPSTSVQEASRLMMEFDVGSLVVINDDG-NVVGFFTKSDI 59

Query: 332 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 391
              ++ P L  +   + V   M      T +       IT  + + LG V+  +A   + 
Sbjct: 60  IRRVIVPGLPYD---IPVERIM------TRN------LITANVNTPLGEVLRKMAEHRIK 104

Query: 392 RIYVVAGEEAEVVGVITLRDVISCFI 417
            I +   EE ++VG+ TL D++    
Sbjct: 105 HILIE--EEGKIVGIFTLSDLLEASR 128

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 35/153 (22%)

Query: 196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTP-------DIKN 247
              ++  +        L V    S+     L+ ++ + ++ +I + G         DI  
Sbjct: 6   KAPIKVYMTK----KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR 61

Query: 248 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN 307
            +             G  +       P+       M+ + +IT   N  + E  ++M ++
Sbjct: 62  RVIV----------PGLPY-----DIPVER----IMTRN-LITANVNTPLGEVLRKMAEH 101

Query: 308 NIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPE 339
            I  I + E    KIVG  ++ D+      + E
Sbjct: 102 RIKHILIEEE--GKIVGIFTLSDLLEASRRRLE 132

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 80.9 bits (200), Expect = 2e-18
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 19/135 (14%)

Query: 282 FM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 340
            M SS++V  +Q    +  A   +  +    IPV++    K+ G +S   I   +L  E 
Sbjct: 20  LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLD-PMYKLHGLISTAMILDGILGLER 78

Query: 341 FS--NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAG 398
                  ++ V   M                   KLE +    +        H       
Sbjct: 79  IEFERLEEMKVEQVMK------------QDIPVLKLEDSFAKALEMTID---HPFICAVN 123

Query: 399 EEAEVVGVITLRDVI 413
           E+    G++T R ++
Sbjct: 124 EDGYFEGILTRRAIL 138

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 23/151 (15%), Positives = 57/151 (37%), Gaps = 28/151 (18%)

Query: 189 LQEEPFKSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEP----- 240
           + ++ F+   V+ ++          VA     + +   LL+L K     +P+++P     
Sbjct: 7   IPKDEFQQIFVKDLMI-----SSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLH 61

Query: 241 GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEA 300
           G       I+ + ++ G+ G +  ++ + +    +       M  D +  ++  +   +A
Sbjct: 62  GL------ISTAMILDGILGLERIEF-ERLEEMKVEQ----VMKQD-IPVLKLEDSFAKA 109

Query: 301 FKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
            +   D+    I  V        G ++ R I
Sbjct: 110 LEMTIDHPF--ICAVNEDG-YFEGILTRRAI 137

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 11/97 (11%)

Query: 341 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 400
              F+Q+ V+D M                   ++ + L   +  L       I V+    
Sbjct: 9   KDEFQQIFVKDLM------ISSE----KVAHVQIGNGLEHALLVLVKSGYSAIPVL-DPM 57

Query: 401 AEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLN 437
            ++ G+I+   ++   +       +      V+ ++ 
Sbjct: 58  YKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMK 94

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 81.2 bits (201), Expect = 2e-18
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 21/141 (14%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP--- 338
            M+     T+     + +A   M+  +I  +P+V+   KK++G VS RD+          
Sbjct: 10  MMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQR 67

Query: 339 --ELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVV 396
             +  S   +  + + M        D        +   ++ L      +    +  + VV
Sbjct: 68  SAQGDSLAFETPLFEVM------HTD------VTSVAPQAGLKESAIYMQKHKIGCLPVV 115

Query: 397 AGEEAEVVGVITLRDVISCFI 417
              +  +VG+IT  D ++  I
Sbjct: 116 --AKDVLVGIITDSDFVTIAI 134

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 18/131 (13%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNY----ITQSAVVQGLEGCKGR--DWF 267
           +    ++     L+    +R+VPI+     D        ++Q  ++   E    R     
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIV-----DANKKLLGIVSQRDLLAAQESSLQRSAQGD 72

Query: 268 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 327
            +    P+ ++    M +D V ++     + E+   M+ + IG +PVV      +VG ++
Sbjct: 73  SLAFETPLFEV----MHTD-VTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIIT 125

Query: 328 IRDIRHLLLKP 338
             D   + +  
Sbjct: 126 DSDFVTIAINL 136

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 80.1 bits (198), Expect = 5e-18
 Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 26/161 (16%)

Query: 263 GRDWFDIIASQP----ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ 318
           G+    ++A +     + D      S    + I  N  + +A   M   ++G + VV+ +
Sbjct: 3   GKTGTQLLADKLKKLQVKDF----QSIP--VVIHENVSVYDAICTMFLEDVGTLFVVD-R 55

Query: 319 QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTL 378
              +VG +S +D+    +  +       + V   M           ++     C+ E  +
Sbjct: 56  DAVLVGVLSRKDLLRASIGQQ---ELTSVPVHIIMT----------RMPNITVCRREDYV 102

Query: 379 GSVIHSLASKSVHRIYVV--AGEEAEVVGVITLRDVISCFI 417
             +   L  K +  + V+    +  EV+G +T  ++    +
Sbjct: 103 MDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV 143

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 17/154 (11%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 189 LQEEPFKSTTVRSIIKSYRWAPFLPV--ATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIK 246
           L  +  K   V+            PV    + S+   +  +    +  + +++     + 
Sbjct: 9   LLADKLKKLQVKDFQSI-------PVVIHENVSVYDAICTMFLEDVGTLFVVDRDA-VLV 60

Query: 247 NYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD-EVITIQSNELILEAFKRMK 305
             +++  +++   G +       + S P+       M+    +   +  + +++  K + 
Sbjct: 61  GVLSRKDLLRASIGQQE------LTSVPVHI----IMTRMPNITVCRREDYVMDIAKHLI 110

Query: 306 DNNIGGIPVVE--GQQKKIVGNVSIRDIRHLLLK 337
           +  I  +PV++   +  +++G V+  ++  +L+ 
Sbjct: 111 EKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS 144

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 79.8 bits (197), Expect = 5e-18
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 23/150 (15%)

Query: 267 FDIIASQPISDLGLPFM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGN 325
            +      +      F+  +D+V  +Q    +  A   +       IPV++    K+ G 
Sbjct: 5   HNEFMQMTVKP----FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLD-TSYKLHGL 59

Query: 326 VSIRDIRHLLLKPELFS--NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIH 383
           +S+  +   +L  E         + V + MN  +P       +        + +L   + 
Sbjct: 60  ISMTMMMDAILGLERIEFERLETMKVEEVMNRNIPR------LRL------DDSLMKAVG 107

Query: 384 SLASKSVHRIYVVAGEEAEVVGVITLRDVI 413
            + +   H    V  ++    G+ T R+V+
Sbjct: 108 LIVN---HPFVCVENDDGYFAGIFTRREVL 134

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 15/123 (12%), Positives = 52/123 (42%), Gaps = 20/123 (16%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEP-----GTPDIKNYITQSAVVQGLEGCKGRDWFD 268
           V   + +   LL+L+K     +P+++      G       I+ + ++  + G +  + F+
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGL------ISMTMMMDAILGLERIE-FE 78

Query: 269 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSI 328
            + +  + +     M+ + +  ++ ++ +++A   + ++    + V         G  + 
Sbjct: 79  RLETMKVEE----VMNRN-IPRLRLDDSLMKAVGLIVNHPF--VCVENDDG-YFAGIFTR 130

Query: 329 RDI 331
           R++
Sbjct: 131 REV 133

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 11/95 (11%)

Query: 341 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 400
            + F Q+TV+ F+       P           +  + L   +  L       I V+    
Sbjct: 5   HNEFMQMTVKPFL------IPAD----KVAHVQPGNYLDHALLVLTKTGYSAIPVL-DTS 53

Query: 401 AEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDL 435
            ++ G+I++  ++   +       +      V+++
Sbjct: 54  YKLHGLISMTMMMDAILGLERIEFERLETMKVEEV 88

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 78.4 bits (194), Expect = 8e-18
 Identities = 35/151 (23%), Positives = 73/151 (48%), Gaps = 27/151 (17%)

Query: 268 DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVS 327
           D + +  + D     M+ + VIT + +E ++EAF++M    I  +PV++  + K++G V+
Sbjct: 3   DTLKNIKVKD----VMTKN-VITAKRHEGVVEAFEKMLKYKISSLPVIDD-ENKVIGIVT 56

Query: 328 IRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIH---- 383
             DI + L++ +        T+ D M      T D       IT   ++++   I     
Sbjct: 57  TTDIGYNLIRDKYTLE---TTIGDVM------TKD------VITIHEDASILEAIKKMDI 101

Query: 384 -SLASKSVHRIYVVAGEEAEVVGVITLRDVI 413
                + ++++ VV  +  ++VG+I+  D+I
Sbjct: 102 SGKKEEIINQLPVV-DKNNKLVGIISDGDII 131

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 36/159 (22%)

Query: 192 EPFKSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNY 248
           +  K+  V+ ++          V T    + ++     + KY++ ++P+I     D +N 
Sbjct: 3   DTLKNIKVKDVMTK-------NVITAKRHEGVVEAFEKMLKYKISSLPVI-----DDENK 50

Query: 249 ----ITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRM 304
               +T + +                    I D     M+ D VITI  +  ILEA K+M
Sbjct: 51  VIGIVTTTDIG------YNLIRDKYTLETTIGD----VMTKD-VITIHEDASILEAIKKM 99

Query: 305 -----KDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP 338
                K+  I  +PVV+ +  K+VG +S  DI   + K 
Sbjct: 100 DISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTISKI 137

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 79.3 bits (196), Expect = 9e-18
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 17/129 (13%)

Query: 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 344
             +V+T+  +  I EA   +  + IG + V +     ++G  + RD+   +         
Sbjct: 34  GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQGA--AS 90

Query: 345 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 404
            Q +V   M      T +       + C+  ST   ++  +       + V   E   + 
Sbjct: 91  LQQSVSVAM------TKN------VVRCQHNSTTDQLMEIMTGGRFRHVPVE--ENGRLA 136

Query: 405 GVITLRDVI 413
           G+I++ DV+
Sbjct: 137 GIISIGDVV 145

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 33/168 (19%)

Query: 196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTP-------DIKN 247
           +T V+ ++          V  D S+      L  +++  V + +  G         D+  
Sbjct: 23  ATFVKDLLDRKGRDVVT-VGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81

Query: 248 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN 307
                AV       +G         Q +S      M+ + V+  Q N    +  + M   
Sbjct: 82  -----AVAG-----QGAASLQ----QSVSV----AMTKN-VVRCQHNSTTDQLMEIMTGG 122

Query: 308 NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNA 355
               +PV E    ++ G +SI D+    +          +  + ++  
Sbjct: 123 RFRHVPVEEN--GRLAGIISIGDVVKARIGEIEAEA-EHI--KAYIAG 165

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 79.0 bits (195), Expect = 1e-17
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 19/135 (14%)

Query: 282 FM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 340
           FM  +D+V  +Q    +  A   +       IPV++    ++ G +    I + +   E 
Sbjct: 19  FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PSYRLHGLIGTNMIMNSIFGLER 77

Query: 341 FS--NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAG 398
                  Q+TV + M                    +   +      + +   +    V  
Sbjct: 78  IEFEKLDQITVEEVML------------TDIPRLHINDPIMKGFGMVIN---NGFVCVEN 122

Query: 399 EEAEVVGVITLRDVI 413
           +E    G+ T R V+
Sbjct: 123 DEQVFEGIFTRRVVL 137

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 24/150 (16%), Positives = 58/150 (38%), Gaps = 28/150 (18%)

Query: 190 QEEPFKSTTVRSIIKSYRWAPFLPVAT---DDSMLSVLLLLSKYRLRNVPIIEP-----G 241
           Q +     TV   +          VA     +++   LL+L+K     +P+++P     G
Sbjct: 7   QSDQLLEATVGQFMI-----EADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHG 61

Query: 242 TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAF 301
                  I  + ++  + G +  ++ + +    + +     M +D +  +  N+ I++ F
Sbjct: 62  L------IGTNMIMNSIFGLERIEF-EKLDQITVEE----VMLTD-IPRLHINDPIMKGF 109

Query: 302 KRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
             + +N    + V   +Q    G  + R +
Sbjct: 110 GMVINNGF--VCVENDEQ-VFEGIFTRRVV 136

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 11/97 (11%)

Query: 341 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 400
                + TV  FM                   ++ + L   +  L       I V+    
Sbjct: 8   SDQLLEATVGQFM------IEAD----KVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PS 56

Query: 401 AEVVGVITLRDVISCFIFEPPNHLDNYFGFSVKDLLN 437
             + G+I    +++          +     +V++++ 
Sbjct: 57  YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVML 93

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 17/144 (11%), Positives = 46/144 (31%), Gaps = 28/144 (19%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL- 340
            +S      ++ +  I E   R+ ++ +     V     K+VG + +  +  +       
Sbjct: 21  LISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVAR-DNKLVGMIPVMHLLKVSGFHFFG 78

Query: 341 -----------FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKS 389
                                + M               P+   +++ L   +  +   +
Sbjct: 79  FIPKEELIRSSMKRLIAKNASEIMLD-------------PVYVHMDTPLEEALKLMIDNN 125

Query: 390 VHRIYVVAGEEAEVVGVITLRDVI 413
           +  + VV  E+ E+VG +   +++
Sbjct: 126 IQEMPVV-DEKGEIVGDLNSLEIL 148

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 26/172 (15%)

Query: 176 AADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNV 235
            +D++H   +         K   V  +I          V  D  +  ++  + +  +   
Sbjct: 2   GSDKIHHHHH-------HMKVKDVCKLISL----KPTVVEEDTPIEEIVDRILEDPVTRT 50

Query: 236 PII-EPGTP-------DIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE 287
             +              +             +    R     + ++  S++    M    
Sbjct: 51  VYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEI----MLD-- 104

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE 339
            + +  +  + EA K M DNNI  +PVV+ +  +IVG+++  +I   L K  
Sbjct: 105 PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG-EIVGDLNSLEILLALWKGR 155

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 75.6 bits (187), Expect = 6e-17
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 22/132 (16%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 341
            +S    IT  SN  I+EA K +  +NI  +P+V+    K+VG ++  DI          
Sbjct: 6   ILSKP-PITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAK-------A 56

Query: 342 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 401
               + T+ + M      T +       IT   +  +  V   ++  ++  + VV  +  
Sbjct: 57  LAQNKKTIEEIM------TRN------VITAHEDEPVDHVAIKMSKYNISGVPVV-DDYR 103

Query: 402 EVVGVITLRDVI 413
            VVG++T  D+ 
Sbjct: 104 RVVGIVTSEDIS 115

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 73.5 bits (181), Expect = 7e-16
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 24/141 (17%)

Query: 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIR 332
             S+L    +     +++     I E    +  N +G   +      K+ V  VS RDI 
Sbjct: 6   RTSEL----LKRP-PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL 60

Query: 333 HLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHR 392
             + +                N+             PIT      +      +   ++  
Sbjct: 61  RAVAQRLDLD----GPAMPIANS-------------PITVLDTDPVHVAAEKMRRHNIRH 103

Query: 393 IYVVAGEEAEVVGVITLRDVI 413
           + VV  +  E+VGV+++RD+ 
Sbjct: 104 V-VVVNKNGELVGVLSIRDLC 123

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 51.1 bits (123), Expect = 4e-08
 Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 36/155 (23%)

Query: 196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD----IKNYITQ 251
           +     ++K     P + +    ++  V   L+K R+    +     P     +   +++
Sbjct: 4   AIRTSELLKR----PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAV---VSE 56

Query: 252 SAVVQGLEGCKGRDWFDIIA-----SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKD 306
                       RD    +A       P   +     +S   IT+   + +  A ++M+ 
Sbjct: 57  ------------RDILRAVAQRLDLDGPAMPI----ANS--PITVLDTDPVHVAAEKMRR 98

Query: 307 NNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPEL 340
           +NI  + VV     ++VG +SIRD+     +  EL
Sbjct: 99  HNIRHVVVVNKN-GELVGVLSIRDLCFERAILLEL 132

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 73.2 bits (180), Expect = 4e-15
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 24/139 (17%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 341
           +++ D    ++ +  + E   RM+        V +  +    G V+  D+  L L     
Sbjct: 18  WVTQD-FPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLDLD---- 71

Query: 342 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 401
                 +V + ++             P      E  +   +          + VV  EE 
Sbjct: 72  -----SSVFNKVSL------------PDFFVHEEDNITHALLLFLEHQEPYLPVV-DEEM 113

Query: 402 EVVGVITLRDVISCFIFEP 420
            + G ++L D +   I   
Sbjct: 114 RLKGAVSLHDFLEALIEAL 132

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI 269
            F  V    ++   L  + +Y+     + +           +    +G+      D  D+
Sbjct: 22  DFPMVEESATVRECLHRMRQYQTNECIVKD-----------REGHFRGV--VNKEDLLDL 68

Query: 270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329
                + +     +S      +   + I  A     ++    +PVV  ++ ++ G VS+ 
Sbjct: 69  DLDSSVFNK----VSL-PDFFVHEEDNITHALLLFLEHQEPYLPVV-DEEMRLKGAVSLH 122

Query: 330 DIRHLLLKP 338
           D    L++ 
Sbjct: 123 DFLEALIEA 131

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 13/78 (16%)

Query: 337 KPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVV 396
             ++  +   + V+ ++                   +  +T+   +H +     +   V 
Sbjct: 3   SDKIHHHHHHMKVKKWVT------------QDFPMVEESATVRECLHRMRQYQTNECIVK 50

Query: 397 AGEEAEVVGVITLRDVIS 414
              E    GV+   D++ 
Sbjct: 51  D-REGHFRGVVNKEDLLD 67

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 72.1 bits (177), Expect = 5e-15
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 39/161 (24%)

Query: 282 FMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP-- 338
           FM+    +  ++ +  + +A + + +  + G+PV++     +VG VS  D+  L      
Sbjct: 9   FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGR 67

Query: 339 ----------------------ELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLES 376
                                 +L S      V D M               P+  +  +
Sbjct: 68  SQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTP------------SPLVVRDST 115

Query: 377 TLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 417
            L      L      R+ VV   + +++G++T  +V+   +
Sbjct: 116 NLEDAARLLLETKFRRLPVV-DADGKLIGILTRGNVVRAAL 155

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 18/146 (12%), Positives = 50/146 (34%), Gaps = 26/146 (17%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIE--------------------PGTPDIKNYITQSA 253
           V    S+   L LL + ++  +P+I+                     G       +    
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDV 78

Query: 254 VVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIP 313
                   + +        + + DL    M+    + ++ +  + +A + + +     +P
Sbjct: 79  DSTWKTFNELQKLISKTYGKVVGDL----MTPS-PLVVRDSTNLEDAARLLLETKFRRLP 133

Query: 314 VVEGQQKKIVGNVSIRDIRHLLLKPE 339
           VV+    K++G ++  ++    L+ +
Sbjct: 134 VVDADG-KLIGILTRGNVVRAALQIK 158

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 70.8 bits (173), Expect = 9e-15
 Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 11/134 (8%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE-GQQKKIVGNVSIRDI-RHLLLKPE 339
           FM+   + T+  +  + E  K +   ++   P+VE  + + +VG V    + + L  +P 
Sbjct: 18  FMNHS-ITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPP 76

Query: 340 LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGE 399
             +   Q  ++D +    PT P        +T   E+TL    +     ++  ++V    
Sbjct: 77  SRAPGHQQCLQDILARGCPTEP------VTLTLFSETTLHQAQNLFKLLNLQSLFVT--S 128

Query: 400 EAEVVGVITLRDVI 413
               VG ++  ++ 
Sbjct: 129 RGRAVGCVSWVEMK 142

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGRDWFDIIAS 272
           +A D  +  V+ +++   +   P++E   +  +   + ++ +VQ L+  +          
Sbjct: 26  LAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ-AEPPSRAPGHQQ 84

Query: 273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR 332
                L     +    +T+ S   + +A    K  N+  + V      + VG VS  +++
Sbjct: 85  CLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR--GRAVGCVSWVEMK 142

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 341
           +++  +           +A +R+  +     PV++G  ++ +G V +      LL+    
Sbjct: 9   YLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSR----LLEGRKG 62

Query: 342 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 401
               +  + + +   V +        P         L   + S+A+     + +   E+ 
Sbjct: 63  WPTVKEKLGEELLETVRS------YRP------GEQLFDNLISVAAAKCSVVPLA-DEDG 109

Query: 402 EVVGVITLRDVI 413
              GV++ + ++
Sbjct: 110 RYEGVVSRKRIL 121

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 201 SIIKSYRWAPFLPVAT-DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLE 259
           S+  SY      PV T   S       L+       P+++         +  S +++G +
Sbjct: 4   SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDGERY--LGMVHLSRLLEGRK 61

Query: 260 GCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ 319
           G            + + +  L       V + +  E + +    +       +P+ + + 
Sbjct: 62  GWPT-------VKEKLGEELLE-----TVRSYRPGEQLFDNLISVAAAKCSVVPLAD-ED 108

Query: 320 KKIVGNVSIRDI 331
            +  G VS + I
Sbjct: 109 GRYEGVVSRKRI 120

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 64.4 bits (157), Expect = 9e-12
 Identities = 29/197 (14%), Positives = 71/197 (36%), Gaps = 34/197 (17%)

Query: 217 DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS 276
             +    L L  KY++R+ P++      +   I+             +        + ++
Sbjct: 17  PATRNYALELFKKYKVRSFPVVN-KEGKLVGIISV------------KRILVNPDEEQLA 63

Query: 277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL 336
            L    +  D V  ++ N+ + +A K M + +   + VV+  + K VG +++ DI     
Sbjct: 64  ML----VKRD-VPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYF 117

Query: 337 KPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVV 396
                  ++ + +  +    V    +               L + + +L   +   +  V
Sbjct: 118 AKS--EKYKGVEIEPYYQRYVSIVWEGT------------PLKAALKALLLSNSMAL-PV 162

Query: 397 AGEEAEVVGVITLRDVI 413
              E  +VG++   D++
Sbjct: 163 VDSEGNLVGIVDETDLL 179

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 24/143 (16%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 342
           M+ +  +TI        A +  K   +   PVV   + K+VG +S++ I           
Sbjct: 7   MTQN-PVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRIL---------V 55

Query: 343 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 402
           N  +  +   +                   K   TL      +      R+ VV   + +
Sbjct: 56  NPDEEQLAMLVK------------RDVPVVKENDTLKKAAKLMLEYDYRRVVVV-DSKGK 102

Query: 403 VVGVITLRDVISCFIFEPPNHLD 425
            VG++T+ D+I  +  +   +  
Sbjct: 103 PVGILTVGDIIRRYFAKSEKYKG 125

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 19/128 (14%), Positives = 55/128 (42%), Gaps = 6/128 (4%)

Query: 212 LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA 271
           LPV   +  L  ++  +     +  +    + ++     +  +++         +   + 
Sbjct: 160 LPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLP 219

Query: 272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
           ++P++++    M+ D VI    +  + E   +M   +I  +PV+ G+   ++G +   D+
Sbjct: 220 NKPVAEI----MTRD-VIVATPHMTVHEVALKMAKYSIEQLPVIRGEG-DLIGLIRDFDL 273

Query: 332 RHLLLKPE 339
             +L+K +
Sbjct: 274 LKVLVKSK 281

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 56.8 bits (137), Expect = 9e-10
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 17/147 (11%)

Query: 282 FMSSDE-----VITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLL 335
            M          +  Q +  + +    + +    G PVV  ++ +++VG V  RD+   +
Sbjct: 16  VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISI 75

Query: 336 LKPELFSNFRQLTVRDFMNAVVPTTPDSGKVN---------PPITCKLESTLGSVIHSLA 386
                  +    T   +     P  P                P T    + +  V+    
Sbjct: 76  ENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFR 135

Query: 387 SKSVHRIYVVAGEEAEVVGVITLRDVI 413
              + +  V       ++G+IT +DV+
Sbjct: 136 KLGLRQCLVT--HNGRLLGIITKKDVL 160

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 49.1 bits (117), Expect = 4e-07
 Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 25/164 (15%)

Query: 191 EEPFKSTTVRSIIKSYRWAPFLPVATDDSML--SVLLLLSKYRLRNVPIIE-PGTPDIKN 247
           EE    T    ++K  R  P L V T DSM    V  ++S+      P++    +  +  
Sbjct: 5   EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVG 64

Query: 248 YITQSAVVQGLEGCKGRDWFDIIASQPISDLGL----------------PFMSSDEVITI 291
           ++ +  ++  +E    R   D + S  I                       +      T+
Sbjct: 65  FVLRRDLIISIE--NARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS-PFTV 121

Query: 292 QSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHL 334
                +       +   +    V      +++G ++ +D+ +H+
Sbjct: 122 TDLTPMEIVVDIFRKLGLRQCLVTHN--GRLLGIITKKDVLKHI 163

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 47/311 (15%), Positives = 109/311 (35%), Gaps = 75/311 (24%)

Query: 171 KDAPTAADRLHEDFYKVIL-QEEPFKSTTVRSIIKSYRW----------APFLP----VA 215
           KDA +   RL   F+ ++  QEE  +      +  +Y++           P +     + 
Sbjct: 58  KDAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 216 TDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQ-----SAVVQGLEGCKGRDWFDII 270
             D + +   + +KY   NV  ++P    ++  + +     + ++ G+ G  G+ W   +
Sbjct: 115 QRDRLYNDNQVFAKY---NVSRLQPYL-KLRQALLELRPAKNVLIDGVLGS-GKTW---V 166

Query: 271 ASQPISDLGLPFMSSDEV--ITI---QSNELILEAFKRM----------KDNNIGGIPV- 314
           A        +      ++  + +    S E +LE  +++          + ++   I + 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 315 VEGQQKKIVGNVSIRDIRHLLL------KPELFSNF----------RQLTVRDFMNAVVP 358
           +   Q ++   +  +   + LL        + ++ F          R   V DF++A   
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 359 TTPDSGKVNPPIT-CKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLR-DVISCF 416
           T       +  +T  +++S L   +                   EV+     R  +I+  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----------EVLTTNPRRLSIIAES 336

Query: 417 IFEPPNHLDNY 427
           I +     DN+
Sbjct: 337 IRDGLATWDNW 347

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 7e-09
 Identities = 51/361 (14%), Positives = 96/361 (26%), Gaps = 116/361 (32%)

Query: 140 GMTGPAAVAGLTVAAAGAAVAGGLAAEKGAG--------KDAPTAADRLHEDFYKVI--- 188
           G+ G    +G T  A    ++  +  +             ++P     + +     I   
Sbjct: 157 GVLG----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 189 LQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYR-----LRNV-------- 235
                  S+ ++  I S +           + L  LL    Y      L NV        
Sbjct: 213 WTSRSDHSSNIKLRIHSIQ-----------AELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 236 --------------PIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL--- 278
                          + +  +     +I+       L   + +            DL   
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 279 ---GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL 335
                P   S          +I E+ +            V   +   +   S+       
Sbjct: 322 VLTTNPRRLS----------IIAESIRDGL-ATWDNWKHVNCDKLTTIIESSLNV----- 365

Query: 336 LKPELF-SNFRQLTVRDFMNAVVPTTPDSGKVNPPIT-CKL-----ESTLGSVIHSLASK 388
           L+P  +   F +L+V  F        P S  + P I    +     +S +  V++ L   
Sbjct: 366 LEPAEYRKMFDRLSV--F--------PPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 389 S------------VHRIYVVAGEEAEVVGVITL-RDVISCFIF--------EPPNHLDNY 427
           S            +  IY+    + E      L R ++  +            P +LD Y
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLE--NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 428 F 428
           F
Sbjct: 473 F 473

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 27/157 (17%), Positives = 54/157 (34%), Gaps = 29/157 (18%)

Query: 262 KGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK 321
           +   W+    S  I++L LP       + ++S+  + EA   MK + +  +PVV+     
Sbjct: 376 EHGHWWW---SLAIAELELP----APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGS 428

Query: 322 IVGNVSIRDI-RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGS 380
           ++G V    +   ++      S+         +N  V                    LG 
Sbjct: 429 VLGVVGQETLITQIVSMNRQQSD----PAIKALNKRVIRLN------------ESEILGK 472

Query: 381 VIHSLASKSVHRIYVVAGEEA---EVVGVITLRDVIS 414
           +   L       + ++    A   E+  + T  DV +
Sbjct: 473 LARVLEVDPS--VLILGKNPAGKVELKALATKLDVTT 507

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 21/124 (16%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKPELFSNFRQL 347
             +     + +A   M    I G+PVV    ++K+VG ++ RD+R        F     +
Sbjct: 124 FFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMR--------FIQDYSI 175

Query: 348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 407
            + D M      T +       IT  + +TL      L    + ++ +V      + G+I
Sbjct: 176 KISDVM------TKE-----QLITAPVGTTLSEAEKILQKYKIEKLPLV-DNNGVLQGLI 223

Query: 408 TLRD 411
           T++D
Sbjct: 224 TIKD 227

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 20/123 (16%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 348
           IT+  +  + EA   M +  IGG+PVV+  + ++VG ++ RD+R        F       
Sbjct: 106 ITVTPDMTVKEAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVR--------FEKNLSKK 156

Query: 349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 408
           ++D M      TP        I    + +L      L    + ++ +V  ++ ++VG+IT
Sbjct: 157 IKDLM------TPR----EKLIVAPPDISLEKAKEILHQHRIEKLPLV-SKDNKLVGLIT 205

Query: 409 LRD 411
           ++D
Sbjct: 206 IKD 208

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 50.5 bits (122), Expect = 6e-07
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 21/124 (16%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL 347
             +     + EA + M+   I G+P+VE    +K+VG ++ RD+R        F +    
Sbjct: 101 FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMR--------FISDYNA 152

Query: 348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVI 407
            + + M      T +       +T  + + L +    L    + ++ +V      + G+I
Sbjct: 153 PISEHM------TSE-----HLVTAAVGTDLETAERILHEHRIEKLPLV-DNSGRLSGLI 200

Query: 408 TLRD 411
           T++D
Sbjct: 201 TIKD 204

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 25/124 (20%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 348
           ITI  +E +  A   M+ + I G+PVVE   +K+VG ++ +DI     K           
Sbjct: 104 ITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAAREGKL---------- 151

Query: 349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 408
           V++ M      T         IT      +   +  +    + R+ VV  E  ++VG+IT
Sbjct: 152 VKELM------TK------EVITVPESIEVEEALKIMIENRIDRLPVV-DERGKLVGLIT 198

Query: 409 LRDV 412
           + D+
Sbjct: 199 MSDL 202

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 49.0 bits (118), Expect = 2e-06
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT 348
           +T++  + I +  +    +   G PVV  +  ++VG ++ RD+R        F      +
Sbjct: 100 VTVRPEQTIADVMELTHYHGFAGFPVVT-ENNELVGIITGRDVR--------FVTDLTKS 150

Query: 349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT 408
           V   M      TP         T K  +T   V   +    V +I VV  +E ++ G+IT
Sbjct: 151 VAAVM------TPK----ERLATVKEGATGAEVQEKMHKARVEKILVV-NDEFQLKGMIT 199

Query: 409 LRD 411
            +D
Sbjct: 200 AKD 202

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 16/126 (12%), Positives = 43/126 (34%), Gaps = 22/126 (17%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQK--KIVGNVSIRDIRHLLLKPELFSNFR- 345
             ++ ++   +     +      + V +       ++G V+ RD              + 
Sbjct: 108 SNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYP--------IDLTQT 159

Query: 346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 405
           +  V D M      TP S  V    T   ++ L      +  K ++ + ++  ++  +  
Sbjct: 160 ETKVSDMM------TPFSKLV----TAHQDTKLSEANKIIWEKKLNALPII-DDDQHLRY 208

Query: 406 VITLRD 411
           ++  +D
Sbjct: 209 IVFRKD 214

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 23/127 (18%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVE--GQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
           + +  +  + +  +    +   GIP+ E      K+VG V+ RDI         F   + 
Sbjct: 119 VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDID--------FLAEKD 170

Query: 347 LT--VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 404
            T  + + M      TP        +      TL      L      ++ +V  +  E+V
Sbjct: 171 HTTLLSEVM------TPR----IELVVAPAGVTLKEANEILQRSKKGKLPIV-NDCDELV 219

Query: 405 GVITLRD 411
            +I   D
Sbjct: 220 AIIARTD 226

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 344
            D++  +     +  A+  M+D N+  IPV +G    ++G +S  +I    +     +  
Sbjct: 14  MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNN-HLLGMLSTSNITATYMDIWDSNIL 72

Query: 345 RQLTVRDFM 353
            +       
Sbjct: 73  AKSATSLDN 81

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
           I I+   L ++A   M+  +I  + V +G    ++G V + D+
Sbjct: 106 IRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDL 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	438
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	99.98
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.97
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.97
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.97
3ddj_A	296	CBS domain-containing protein; structural genomics	99.91
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.91
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.89
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.88
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.86
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.86
4esy_A	170	CBS domain containing membrane protein; structural	99.81
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.8
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.78
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.78
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.77
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.77
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.77
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.76
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.76
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.75
4esy_A	170	CBS domain containing membrane protein; structural	99.75
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.74
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.74
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.73
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.73
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.73
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.73
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.72
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.72
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.72
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.72
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.71
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.71
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.71
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.71
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.71
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.71
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.7
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.7
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.7
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.7
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.69
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.69
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.69
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.69
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.69
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.69
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.69
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.69
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.68
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.68
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.68
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.68
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.68
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.68
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.68
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.68
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.67
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.67
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.67
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.67
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.67
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.66
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.66
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.66
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.66
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.66
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.65
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.65
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.65
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.64
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.64
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.63
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.63
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.63
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.63
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.62
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.62
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.62
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.62
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.61
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.61
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.61
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.61
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.61
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.61
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.6
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.6
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.6
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.59
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.59
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.58
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.58
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.58
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.56
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.55
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.5
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.5
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.48
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.48
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.44
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.42
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.37
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.35
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.35
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.34
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.32
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.32
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.32
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.27
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.25
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.23
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.22
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.19
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.15
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.13
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.09
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.07
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.07
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.04
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.01
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.96
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.95
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.86
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.66
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.58

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=1e-32  Score=263.23  Aligned_cols=253  Identities=20%  Similarity=0.338  Sum_probs=207.8

Q ss_pred             CCCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHHhhhhcccccccccccCCcccccch
Q 013669           56 RDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALG  135 (438)
Q Consensus        56 ~~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  135 (438)
                      +++|+.+|+++|.+++++++||+|++.       ++++|++|..||+.++.......                       
T Consensus        19 ~~~sl~~a~~~m~~~~~~~lpV~d~~~-------~~~~Givt~~di~~~~~~~~~~~-----------------------   68 (280)
T 3kh5_A           19 PTTTIRKALMTMNENKYRRLPVVNAGN-------NKVVGIITSMDIVDFMGGGSKYN-----------------------   68 (280)
T ss_dssp             TTSBHHHHHHHHHHHCCCEEEEECTTT-------CBEEEEEEHHHHHHHTTTSGGGH-----------------------
T ss_pred             CCCcHHHHHHHHHhCCCcEeeEEECCC-------CeEEEEEEHHHHHHHhcccchhh-----------------------
Confidence            499999999999999999999999744       69999999999998742211000                       


Q ss_pred             hhhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhccCCCCCCchhhhccccCCCCceEEe
Q 013669          136 ALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVA  215 (438)
Q Consensus       136 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v~  215 (438)
                                    +                         .......+++..+       ..+++++|.    .+++++.
T Consensus        69 --------------~-------------------------~~~~~~~~~~~~~-------~~~v~~im~----~~~~~v~   98 (280)
T 3kh5_A           69 --------------L-------------------------IREKHERNFLAAI-------NEPVREIME----ENVITLK   98 (280)
T ss_dssp             --------------H-------------------------HHTTSTTCHHHHT-------TSBGGGTSB----CSCCCEE
T ss_pred             --------------h-------------------------hhhccccchhHHh-------hhhHHHhcC----CCCEEEC
Confidence                          0                         0000111222111       356999998    6899999


Q ss_pred             CCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceEEcCCC
Q 013669          216 TDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNE  295 (438)
Q Consensus       216 ~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~  295 (438)
                      +++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+.....       ...++.+    +|.+ ++.++.+++
T Consensus        99 ~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-------~~~~v~~----~m~~-~~~~v~~~~  165 (280)
T 3kh5_A           99 ENADIDEAIETFLTKNVGGAPIVNDE-NQLISLITERDVIRALLDKID-------ENEVIDD----YITR-DVIVATPGE  165 (280)
T ss_dssp             TTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHGGGSC-------TTCBSGG----GCBC-SCCCBCTTC
T ss_pred             CCCCHHHHHHHHHhCCCCEEEEEcCC-CEEEEEEEHHHHHHHHhhcCC-------CCCCHHH----HhCC-CCeEECCCC
Confidence            99999999999999999999999987 899999999999998865421       2347888    7876 889999999


Q ss_pred             cHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc--------ccccCcHHHHhcccCCCCCCCCCCC
Q 013669          296 LILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS--------NFRQLTVRDFMNAVVPTTPDSGKVN  367 (438)
Q Consensus       296 ~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~--------~~~~~~v~~~m~~~~~~~~~~~~~~  367 (438)
                      ++.++++.|.+++++++||++  +|+++|+||.+|++..+.....+.        .....++.++|..            
T Consensus       166 ~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~------------  231 (280)
T 3kh5_A          166 RLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKR------------  231 (280)
T ss_dssp             BHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBHHHHSBS------------
T ss_pred             cHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcHHHHhcC------------
Confidence            999999999999999999995  799999999999999876432111        1245689999985            


Q ss_pred             CCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          368 PPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       368 ~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                      +++++++++++.+|++.|.+++++++||+|++| +++|+||.+||++++
T Consensus       232 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Givt~~dil~~l  279 (280)
T 3kh5_A          232 DVITAKEGDKLKKIAEIMVTNDIGALPVVDENL-RIKGIITEKDVLKYF  279 (280)
T ss_dssp             SCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTC-BEEEEEEHHHHGGGG
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-eEEEEEeHHHHHHhh
Confidence            889999999999999999999999999999987 999999999999876

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=7.3e-33  Score=270.48  Aligned_cols=287  Identities=14%  Similarity=0.271  Sum_probs=218.0

Q ss_pred             HHHHhccCCCccCCCCCCC-----CCCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHH
Q 013669           37 LTAAFARIPVLSFPNVPGG-----RDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAEL  111 (438)
Q Consensus        37 ~~~~~~~~pvs~~p~~~~~-----~~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~  111 (438)
                      +..|+....++++..+...     .++|+.+|++.|.+++++++||+|++.       ++++|+++..|++..++.....
T Consensus        23 i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~-------~~lvGilt~~Dl~~~l~~~~~~   95 (323)
T 3t4n_C           23 IRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKT-------SRFAGLLTTTDFINVIQYYFSN   95 (323)
T ss_dssp             HHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCC-------CeEEEEEEHHHHHHHHHHHHcC
Confidence            3445566666665553221     289999999999999999999999875       6999999999999886643321


Q ss_pred             hhhhcccccccccccCCcccccchhhhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhcc
Q 013669          112 AAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQE  191 (438)
Q Consensus       112 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~  191 (438)
                      ...                                                                      +..+   
T Consensus        96 ~~~----------------------------------------------------------------------~~~l---  102 (323)
T 3t4n_C           96 PDK----------------------------------------------------------------------FELV---  102 (323)
T ss_dssp             GGG----------------------------------------------------------------------GGGG---
T ss_pred             cch----------------------------------------------------------------------hHHH---
Confidence            100                                                                      0000   


Q ss_pred             CCCCCCchhhhccc--cCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCC-----EEEEEeHHHHHHHhhcCCCC
Q 013669          192 EPFKSTTVRSIIKS--YRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD-----IKNYITQSAVVQGLEGCKGR  264 (438)
Q Consensus       192 ~~~~~~~v~di~~~--~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~-----v~Giit~~Di~~~l~~~~~~  264 (438)
                      +.+....+++++..  ....+++++.+++++.+|++.|.+++++++||+|++ +.     ++|++|.+|+++++......
T Consensus       103 ~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~~~~l~Givt~~di~~~l~~~~~~  181 (323)
T 3t4n_C          103 DKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQD-EETHREIVVSVLTQYRILKFVALNCRE  181 (323)
T ss_dssp             GGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC-TTTCCEEEEEEEEHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecC-CCCCccceEEEecHHHHHHHHHhcCCc
Confidence            00111123333311  112678999999999999999999999999999976 54     99999999999988644211


Q ss_pred             CcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc
Q 013669          265 DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF  344 (438)
Q Consensus       265 ~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~  344 (438)
                         ..+...++++++. .|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|++..+.... + ..
T Consensus       182 ---~~~~~~~v~~~~~-~m~~-~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~-~-~~  253 (323)
T 3t4n_C          182 ---THFLKIPIGDLNI-ITQD-NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGI-Y-ND  253 (323)
T ss_dssp             ---GGGCCSBGGGTTC-SBCT-TCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETTHHHHHHHTTH-H-HH
T ss_pred             ---hhhhhCcHHHcCC-CCCC-CcEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHhhch-h-hh
Confidence               2335668888332 1665 8999999999999999999999999999997 799999999999999876432 1 12


Q ss_pred             ccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          345 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       345 ~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      ...++.++|.....      ...++++|.+++++.+|+++|.+++++++||+|++| +++|+||.+||++++..+
T Consensus       254 ~~~~v~~~m~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          254 LSLSVGEALMRRSD------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             TTSBHHHHGGGSCT------TCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTS-BEEEEEEHHHHHHHHHHC
T ss_pred             ccCCHHHHHhhccc------cCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCC-cEEEEEEHHHHHHHHHhc
Confidence            35689999985211      112689999999999999999999999999999888 999999999999999864

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.98  E-value=7.5e-32  Score=260.06  Aligned_cols=261  Identities=16%  Similarity=0.243  Sum_probs=214.1

Q ss_pred             hccCCCccCCCCC---CCCCCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHHhhhhcc
Q 013669           41 FARIPVLSFPNVP---GGRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFS  117 (438)
Q Consensus        41 ~~~~pvs~~p~~~---~~~~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~~~~~~~  117 (438)
                      +...+|+++...+   ..+++|+.+|++.|.+++++++||+|  .        +++|++|..||+.++......      
T Consensus        17 ~~~~~V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d--~--------~l~GivT~~Di~~~~~~~~~~------   80 (296)
T 3ddj_A           17 FQGMNIETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN--E--------KIEGLLTTRDLLSTVESYCKD------   80 (296)
T ss_dssp             TCCSSGGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES--S--------SEEEEEEHHHHHGGGTTCC--------
T ss_pred             hcccCHHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC--C--------eEEEEEeHHHHHHHhcccccc------
Confidence            3556666655421   12399999999999999999999999  4        999999999999763211000      


Q ss_pred             cccccccccCCcccccchhhhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhccCCCCCC
Q 013669          118 VGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKST  197 (438)
Q Consensus       118 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~  197 (438)
                                                                                  .....+++..       ...
T Consensus        81 ------------------------------------------------------------~~~~~~~~~~-------~~~   93 (296)
T 3ddj_A           81 ------------------------------------------------------------SCSQGDLYHI-------STT   93 (296)
T ss_dssp             -------------------------------------------------------------CCHHHHHHH-------HTS
T ss_pred             ------------------------------------------------------------cccchhhHHH-------hcc
Confidence                                                                        0011222221       134


Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +++++|.    .+++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|+++.+....        ...++.+
T Consensus        94 ~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~lvGivt~~dl~~~~~~~~--------~~~~v~~  160 (296)
T 3ddj_A           94 PIIDYMT----PNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKDLD--------EIFPVKV  160 (296)
T ss_dssp             BGGGTSE----ESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGGSC--------CCCBHHH
T ss_pred             cHHHhcc----CCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHhhhccc--------ccccHHH
Confidence            5899998    679999999999999999999999999999977 89999999999998775432        3457888


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-----ccccCcHHHH
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-----NFRQLTVRDF  352 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~-----~~~~~~v~~~  352 (438)
                          +|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|++..+..  .+.     .....++.++
T Consensus       161 ----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~--~~~~~~~~~~~~~~v~~~  232 (296)
T 3ddj_A          161 ----FMST-KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAK--AVDKLDPDYFYGKVVKDV  232 (296)
T ss_dssp             ----HSBC-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH--HHHHTCTHHHHTCBHHHH
T ss_pred             ----hhcC-CCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHH--HHhhcChhhhcCcCHHHH
Confidence                7876 8999999999999999999999999999997 7999999999999988752  111     1235789999


Q ss_pred             hcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          353 MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       353 m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      |..            ++++|.+++++.+|+++|.+++++++||+|++| +++|+||++||++++..
T Consensus       233 m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Giit~~Dil~~l~~  285 (296)
T 3ddj_A          233 MVT------------NLVTIDELASVNRAAAEMIVKRIGSLLILNKDN-TIRGIITERDLLIALHH  285 (296)
T ss_dssp             SBC------------CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHH
T ss_pred             hCC------------CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEcHHHHHHHHHH
Confidence            985            889999999999999999999999999999888 99999999999999985

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.97  E-value=2.4e-30  Score=253.84  Aligned_cols=290  Identities=18%  Similarity=0.302  Sum_probs=220.0

Q ss_pred             HHHHHHhccCCCccCCCCCC-----CCCCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhh
Q 013669           35 ETLTAAFARIPVLSFPNVPG-----GRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETA  109 (438)
Q Consensus        35 ~~~~~~~~~~pvs~~p~~~~-----~~~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~  109 (438)
                      +.+..|+...+++++..+..     ..++|+.+|++.|.+++++++||+|++.       ++++|+|+..|++.++....
T Consensus        13 ~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~-------~~~vGiv~~~Dl~~~~~~~~   85 (334)
T 2qrd_G           13 KEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA-------NKFAGLLTMADFVNVIKYYY   85 (334)
T ss_dssp             HHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT-------TEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCC-------CeEEEEEEHHHHHHHHHHHh
Confidence            34566778899999876421     2299999999999999999999999865       69999999999998765432


Q ss_pred             HHhhhhcccccccccccCCcccccchhhhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhh
Q 013669          110 ELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVIL  189 (438)
Q Consensus       110 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~  189 (438)
                      .....                             +                                      +.+..+ 
T Consensus        86 ~~~~~-----------------------------~--------------------------------------~~~~~~-   97 (334)
T 2qrd_G           86 QSSSF-----------------------------P--------------------------------------EAIAEI-   97 (334)
T ss_dssp             HHCSC-----------------------------G--------------------------------------GGGGGG-
T ss_pred             hccCC-----------------------------c--------------------------------------cHHHHH-
Confidence            11000                             0                                      000000 


Q ss_pred             ccCCCCCCch----hhhccccCCCCc--eEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCC----EEEEEeHHHHHHHhh
Q 013669          190 QEEPFKSTTV----RSIIKSYRWAPF--LPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPD----IKNYITQSAVVQGLE  259 (438)
Q Consensus       190 ~~~~~~~~~v----~di~~~~~~~~~--i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~----v~Giit~~Di~~~l~  259 (438)
                        .......+    +++|.    .++  +++.+++++.++++.|.+++++++||+|++.++    ++|++|..|+++++.
T Consensus        98 --~~~~~~~i~~~l~~im~----~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~  171 (334)
T 2qrd_G           98 --DKFRLLGLREVERKIGA----IPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  171 (334)
T ss_dssp             --GSCBHHHHHHHHHHHTC----SCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHH
T ss_pred             --hhhchhhHHHHHHhhcc----CCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHH
Confidence              00000112    23454    455  999999999999999999999999999976234    999999999999886


Q ss_pred             cCCCCCcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc
Q 013669          260 GCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE  339 (438)
Q Consensus       260 ~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~  339 (438)
                      ...  ... .+...+++++.. +|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|++..+....
T Consensus       172 ~~~--~~~-~~~~~~v~~l~~-~m~~-~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~~  245 (334)
T 2qrd_G          172 MNC--KET-AMLRVPLNQMTI-GTWS-NLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGD  245 (334)
T ss_dssp             HHC--GGG-GGCCCBGGGSSC-SBCS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHTTSC
T ss_pred             hhc--cch-hhhhCcHHHhCC-cccC-CceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhhccc
Confidence            431  100 123456777432 3665 8899999999999999999999999999997 789999999999999876432


Q ss_pred             cccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          340 LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       340 ~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                       + .....++.++|......      ..++++|++++++.+|+++|.+++++++||+|++| +++|+||.+||++++..+
T Consensus       246 -~-~~~~~~v~~~m~~~~~~------~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~l~Giit~~dil~~~~~~  316 (334)
T 2qrd_G          246 -Y-SNLDLSVGEALLKRPAN------FDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENL-KLEGILSLADILNYIIYD  316 (334)
T ss_dssp             -G-GGGGSBHHHHHTTCCTT------CCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTC-BEEEEEEHHHHHHHHHSC
T ss_pred             -c-ccccCcHHHHHhccccc------CCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEeHHHHHHHHHhc
Confidence             1 12356899999731000      02789999999999999999999999999999887 999999999999999864


Q ss_pred             C
Q 013669          420 P  420 (438)
Q Consensus       420 ~  420 (438)
                      .
T Consensus       317 ~  317 (334)
T 2qrd_G          317 K  317 (334)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.97  E-value=1.1e-30  Score=255.91  Aligned_cols=295  Identities=15%  Similarity=0.234  Sum_probs=224.9

Q ss_pred             HHHHHHHHhccCCCccCCCCCC-----CCCCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHH
Q 013669           33 LQETLTAAFARIPVLSFPNVPG-----GRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLE  107 (438)
Q Consensus        33 ~~~~~~~~~~~~pvs~~p~~~~-----~~~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~  107 (438)
                      ..+.++.+|...+++++..+..     ..++|+.+|++.|.+++++++||+|++.       ++++|+|+..|++..+..
T Consensus        24 ~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~-------~~~vGivt~~Dll~~l~~   96 (330)
T 2v8q_E           24 NSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK-------QSFVGMLTITDFINILHR   96 (330)
T ss_dssp             CSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT-------TEEEEEEEHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCC-------CeEEEEEEHHHHHHHHHH
Confidence            3456888999999999884321     1299999999999999999999999875       589999999999987654


Q ss_pred             hhHHhhhhcccccccccccCCcccccchhhhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhh
Q 013669          108 TAELAAAAFSVGTATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKV  187 (438)
Q Consensus       108 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  187 (438)
                      ..+.....                       .                              +.    ........+.  
T Consensus        97 ~~~~~~~~-----------------------~------------------------------~~----l~~~~~~~~~--  117 (330)
T 2v8q_E           97 YYKSALVQ-----------------------I------------------------------YE----LEEHKIETWR--  117 (330)
T ss_dssp             HHHHHTTT-----------------------C------------------------------CC----GGGCBHHHHH--
T ss_pred             HHhccccc-----------------------h------------------------------hH----HhhccHHHHH--
Confidence            32111000                       0                              00    0000000010  


Q ss_pred             hhccCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcC-CCCCEEEEEeHHHHHHHhhcCCCCCc
Q 013669          188 ILQEEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGRDW  266 (438)
Q Consensus       188 l~~~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~-~~~~v~Giit~~Di~~~l~~~~~~~~  266 (438)
                               .+++++|.    .+++++.+++++.+|+++|.+++++++||+|+ + |+++|++|..|+++++........
T Consensus       118 ---------~~~~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~~~Givt~~dl~~~~~~~~~~~~  183 (330)
T 2v8q_E          118 ---------EVYLQDSF----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES-GNTLYILTHKRILKFLKLFITEFP  183 (330)
T ss_dssp             ---------HHHSSSSC----CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT-CCEEEEECHHHHHHHHHHHSCSSS
T ss_pred             ---------HHHhhccc----CCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC-CcEEEEEcHHHHHHHHHHHhhccC
Confidence                     12345666    77999999999999999999999999999997 5 899999999999998865322222


Q ss_pred             ccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccccc
Q 013669          267 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ  346 (438)
Q Consensus       267 ~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~  346 (438)
                      ...+...+++++.  +|...+++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|++..+.... +. ...
T Consensus       184 ~~~~~~~~v~~~~--v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~l~Giit~~dl~~~~~~~~-~~-~~~  258 (330)
T 2v8q_E          184 KPEFMSKSLEELQ--IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKT-YN-NLD  258 (330)
T ss_dssp             CCGGGGSBHHHHT--CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSC-CC-CCS
T ss_pred             chhhhcCCHHHhc--ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEHHHHHHHHhccc-cc-ccc
Confidence            2233455666642  354137899999999999999999999999999997 799999999999998765432 11 125


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      .++.++|.....      ...+++++.+++++.+++++|.+++++++||+|++| +++|+||.+||++++..+
T Consensus       259 ~~v~~~~~~~~~------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g-~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          259 VSVTKALQHRSH------YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             SBHHHHGGGCCS------CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHSS
T ss_pred             CcHHHHHhcccc------ccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCC-cEEEEEeHHHHHHHHHhh
Confidence            689999952100      113889999999999999999999999999999988 999999999999998864

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=1.8e-30  Score=248.27  Aligned_cols=236  Identities=18%  Similarity=0.261  Sum_probs=180.7

Q ss_pred             CCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHHhhhhcccccccccccCCcccccchh
Q 013669           57 DTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGTATAAGVGTGTVGALGA  136 (438)
Q Consensus        57 ~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  136 (438)
                      ++|+.+|+++|.++++.++||+|++        ++++|+++..|++..+.                              
T Consensus        17 ~~~~~~a~~~~~~~~~~~~pV~d~~--------~~~~Giv~~~dl~~~~~------------------------------   58 (282)
T 2yzq_A           17 PATRNYALELFKKYKVRSFPVVNKE--------GKLVGIISVKRILVNPD------------------------------   58 (282)
T ss_dssp             SCC------------CCEEEEECTT--------CCEEEEEESSCC-----------------------------------
T ss_pred             CCcHHHHHHHHHHcCCCeEEEEcCC--------CcEEEEEEHHHHHhhhc------------------------------
Confidence            8899999999999999999999974        59999999999984310                              


Q ss_pred             hhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhccCCCCCCchhhhccccCCCCceEEeC
Q 013669          137 LALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVRSIIKSYRWAPFLPVAT  216 (438)
Q Consensus       137 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~di~~~~~~~~~i~v~~  216 (438)
                                                                                 ..+++++|.    .+++++.+
T Consensus        59 -----------------------------------------------------------~~~v~~~m~----~~~~~v~~   75 (282)
T 2yzq_A           59 -----------------------------------------------------------EEQLAMLVK----RDVPVVKE   75 (282)
T ss_dssp             ----------------------------------------------------------------CCCB----SCCCEEET
T ss_pred             -----------------------------------------------------------cCCHHHHcC----CCCcEECC
Confidence                                                                       123667776    56899999


Q ss_pred             CCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHH-HhhcCCCCCcccccccCCccccccCCCCCCCceEEcCCC
Q 013669          217 DDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQ-GLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNE  295 (438)
Q Consensus       217 ~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~-~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~  295 (438)
                      ++++.+|++.|.+++++++||+|++ |+++|++|..|+++ ++....      .....++++    +|.. +++++.+++
T Consensus        76 ~~~l~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~------~~~~~~v~~----~m~~-~~~~v~~~~  143 (282)
T 2yzq_A           76 NDTLKKAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKSE------KYKGVEIEP----YYQR-YVSIVWEGT  143 (282)
T ss_dssp             TSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCS------GGGGCBSTT----TSBS-CCCCEETTS
T ss_pred             CCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhccC------CcccCcHHH----HhCC-CCEEECCCC
Confidence            9999999999999999999999987 89999999999998 665320      113557788    7876 889999999


Q ss_pred             cHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHH------HHhc------CC-----------cc----ccccccCc
Q 013669          296 LILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR------HLLL------KP-----------EL----FSNFRQLT  348 (438)
Q Consensus       296 ~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~------~~l~------~~-----------~~----~~~~~~~~  348 (438)
                      ++.++++.|.+++++++||+|+ +|+++|++|.+|++      ..+.      .+           ..    .......+
T Consensus       144 ~l~~~~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (282)
T 2yzq_A          144 PLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKP  222 (282)
T ss_dssp             BHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC--------------------------------CCCB
T ss_pred             CHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCC
Confidence            9999999999999999999997 78999999999998      4432      00           00    01123568


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      +.++|++            +++++++++++.+|+++|.+++++++||+|++| +++|+||++||++++..+
T Consensus       223 v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~lvGiit~~Dil~~~~~~  280 (282)
T 2yzq_A          223 VAEIMTR------------DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG-DLIGLIRDFDLLKVLVKS  280 (282)
T ss_dssp             GGGTCBS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTT-EEEEEEEHHHHGGGGCC-
T ss_pred             HHHhcCC------------CCceeCCCCCHHHHHHHHHHcCcceeEEECCCC-CEEEEEeHHHHHHHHHhh
Confidence            8899985            899999999999999999999999999999887 999999999999988754

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.91  E-value=4.9e-24  Score=205.24  Aligned_cols=194  Identities=20%  Similarity=0.292  Sum_probs=167.5

Q ss_pred             CCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCC----ccc
Q 013669          193 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD----WFD  268 (438)
Q Consensus       193 ~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~----~~~  268 (438)
                      .....+|+++|.    .+++++++++++.+|+++|.+++++++||+|   ++++|++|..|+++.+.......    .+-
T Consensus        16 ~~~~~~V~dim~----~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~~~~~~~~~   88 (296)
T 3ddj_A           16 YFQGMNIETLMI----KNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLY   88 (296)
T ss_dssp             TTCCSSGGGTCE----ESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHH
T ss_pred             hhcccCHHHhcc----CCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccccccchhhH
Confidence            355678999999    6799999999999999999999999999998   68999999999999875432110    011


Q ss_pred             ccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013669          269 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT  348 (438)
Q Consensus       269 ~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~  348 (438)
                      .....++++    +|++ +++++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|++..+...     ....+
T Consensus        89 ~~~~~~v~~----im~~-~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~lvGivt~~dl~~~~~~~-----~~~~~  157 (296)
T 3ddj_A           89 HISTTPIID----YMTP-NPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYKDL-----DEIFP  157 (296)
T ss_dssp             HHHTSBGGG----TSEE-SCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGGGS-----CCCCB
T ss_pred             HHhcccHHH----hccC-CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHhhhcc-----ccccc
Confidence            123568888    7887 8899999999999999999999999999987 79999999999998876432     23458


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                      +.++|..            +++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+.
T Consensus       158 v~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~-~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          158 VKVFMST------------KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDN-KVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HHHHSBC------------SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred             HHHhhcC------------CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-EEEEEEEHHHHHHHHH
Confidence            9999984            889999999999999999999999999999887 9999999999999876

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.91  E-value=1.8e-23  Score=199.06  Aligned_cols=186  Identities=23%  Similarity=0.395  Sum_probs=158.3

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc--------ccccccCCcccccc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW--------FDIIASQPISDLGL  280 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~--------~~~l~~~~v~~l~l  280 (438)
                      ++++++++++|+.+|+++|.+++++++||+|+++++++|++|.+|+++++........        +......++++   
T Consensus        12 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---   88 (280)
T 3kh5_A           12 KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINEPVRE---   88 (280)
T ss_dssp             SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTSBGGG---
T ss_pred             CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhhhHHH---
Confidence            6799999999999999999999999999999734899999999999998753321111        11122568888   


Q ss_pred             CCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCC
Q 013669          281 PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTT  360 (438)
Q Consensus       281 ~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~  360 (438)
                       +|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|++..+.....    ...++.++|..     
T Consensus        89 -im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~~~~v~~~m~~-----  156 (280)
T 3kh5_A           89 -IMEE-NVITLKENADIDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKID----ENEVIDDYITR-----  156 (280)
T ss_dssp             -TSBC-SCCCEETTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHGGGSC----TTCBSGGGCBC-----
T ss_pred             -hcCC-CCEEECCCCCHHHHHHHHHhCCCCEEEEEcC-CCEEEEEEEHHHHHHHHhhcCC----CCCCHHHHhCC-----
Confidence             7887 8999999999999999999999999999997 8999999999999988753211    23478899974     


Q ss_pred             CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                             +++++++++++.++++.|.+++++++||+ ++| +++|+||.+||++.+..
T Consensus       157 -------~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~-~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          157 -------DVIVATPGERLKDVARTMVRNGFRRLPVV-SEG-RLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             -------SCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETT-EEEEEEEHHHHHHHHTS
T ss_pred             -------CCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECC-EEEEEEEHHHHHHHHhh
Confidence                   88999999999999999999999999999 556 99999999999998753

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.89  E-value=4.8e-23  Score=200.80  Aligned_cols=207  Identities=14%  Similarity=0.228  Sum_probs=162.1

Q ss_pred             CCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC----CCccccc
Q 013669          195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG----RDWFDII  270 (438)
Q Consensus       195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~----~~~~~~l  270 (438)
                      ...++.++|...  .+++.++.++++.+|++.|.+++++++||+|++.++++|++|..|++.++.....    ...+...
T Consensus        28 ~~~~~~d~m~~~--~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~~~~~l~~~  105 (323)
T 3t4n_C           28 NSKTSYDVLPVS--YRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKL  105 (323)
T ss_dssp             HHSBHHHHSCSE--EEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGGGGGGGGGC
T ss_pred             HhCchHhhCCCC--CcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcchhHHHHHH
Confidence            456799999844  6799999999999999999999999999999865699999999999987642210    0111111


Q ss_pred             ccCCcccc--ccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCe-----EEEEEeHHHHHHHhcCCccccc
Q 013669          271 ASQPISDL--GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK-----IVGNVSIRDIRHLLLKPELFSN  343 (438)
Q Consensus       271 ~~~~v~~l--~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~-----lvGiIs~~Dl~~~l~~~~~~~~  343 (438)
                      ....+.++  ...+|.+ +++++.+++++.++++.|.+++++++||+++ ++.     ++|++|.+|++..+........
T Consensus       106 ~~~~v~~i~~~~~~~~~-~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~~~l~Givt~~di~~~l~~~~~~~~  183 (323)
T 3t4n_C          106 QLDGLKDIERALGVDQL-DTASIHPSRPLFEACLKMLESRSGRIPLIDQ-DEETHREIVVSVLTQYRILKFVALNCRETH  183 (323)
T ss_dssp             BHHHHHHHHHHTTC-----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CTTTCCEEEEEEEEHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHHHHHhCCCCC-CceEeCCCCcHHHHHHHHHhCCeeEEEEEec-CCCCCccceEEEecHHHHHHHHHhcCCchh
Confidence            11222221  0114555 7899999999999999999999999999997 554     9999999999988753211123


Q ss_pred             cccCcHHHH---hcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          344 FRQLTVRDF---MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       344 ~~~~~v~~~---m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      +...++.++   |..            +++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.+..
T Consensus       184 ~~~~~v~~~~~~m~~------------~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~-~~~Giit~~dl~~~~~~  248 (323)
T 3t4n_C          184 FLKIPIGDLNIITQD------------NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG-YLINVYEAYDVLGLIKG  248 (323)
T ss_dssp             GCCSBGGGTTCSBCT------------TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEETTHHHHHHHT
T ss_pred             hhhCcHHHcCCCCCC------------CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEeHHHHHHHHhh
Confidence            345688898   653            889999999999999999999999999999988 99999999999998864

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.88  E-value=2.8e-22  Score=191.25  Aligned_cols=177  Identities=18%  Similarity=0.313  Sum_probs=138.9

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +++++|.    .+++++++++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+.            ..++++
T Consensus         2 ~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-~~~~Giv~~~dl~~~~~------------~~~v~~   64 (282)
T 2yzq_A            2 RVKTIMT----QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPD------------EEQLAM   64 (282)
T ss_dssp             BHHHHSE----ESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC----------------------C
T ss_pred             chHHhcc----CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhhhc------------cCCHHH
Confidence            4788998    779999999999999999999999999999975 89999999999976432            357788


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcHHHHhccc
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTVRDFMNAV  356 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~-~l~~~~~~~~~~~~~v~~~m~~~  356 (438)
                          +|.+ ++.++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|++. .+.....   ....++.++|.. 
T Consensus        65 ----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~~~~---~~~~~v~~~m~~-  134 (282)
T 2yzq_A           65 ----LVKR-DVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEK---YKGVEIEPYYQR-  134 (282)
T ss_dssp             ----CCBS-CCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCSG---GGGCBSTTTSBS-
T ss_pred             ----HcCC-CCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhccCC---cccCcHHHHhCC-
Confidence                7876 7899999999999999999999999999997 789999999999998 6653211   235578888874 


Q ss_pred             CCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013669          357 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI  413 (438)
Q Consensus       357 ~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl  413 (438)
                                 +++++.+++++.++++.|.+++++++||+|++| +++|+||.+|++
T Consensus       135 -----------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~-~~~Giit~~dl~  179 (282)
T 2yzq_A          135 -----------YVSIVWEGTPLKAALKALLLSNSMALPVVDSEG-NLVGIVDETDLL  179 (282)
T ss_dssp             -----------CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTS-CEEEEEEGGGGG
T ss_pred             -----------CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHh
Confidence                       889999999999999999999999999999887 999999999999

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.86  E-value=3.9e-21  Score=188.12  Aligned_cols=206  Identities=14%  Similarity=0.140  Sum_probs=159.1

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC----CCCccccccc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK----GRDWFDIIAS  272 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~----~~~~~~~l~~  272 (438)
                      .+++++|...  .+++++++++++.+|++.|.+++++++||+|++.++++|++|.+|+++++....    ....+..+..
T Consensus        22 ~~v~dim~~~--~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~   99 (334)
T 2qrd_G           22 RTSYDVLPTS--FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDK   99 (334)
T ss_dssp             SBGGGGSCSE--EEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGS
T ss_pred             CchhhhCCCC--CCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhh
Confidence            5699999733  568999999999999999999999999999976578999999999998764210    0111111223


Q ss_pred             CCccccc---cCCCCCCCc--eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCe----EEEEEeHHHHHHHhcCCccccc
Q 013669          273 QPISDLG---LPFMSSDEV--ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKK----IVGNVSIRDIRHLLLKPELFSN  343 (438)
Q Consensus       273 ~~v~~l~---l~~m~~~~v--v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~----lvGiIs~~Dl~~~l~~~~~~~~  343 (438)
                      .++..+.   -.+|.. ++  +++.+++++.++++.|.+++++++||+|+.+++    ++|++|.+|++..+........
T Consensus       100 ~~~~~i~~~l~~im~~-~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~~~  178 (334)
T 2qrd_G          100 FRLLGLREVERKIGAI-PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETA  178 (334)
T ss_dssp             CBHHHHHHHHHHHTCS-CSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGGGG
T ss_pred             hchhhHHHHHHhhccC-CCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccchh
Confidence            3333310   002443 45  899999999999999999999999999862234    9999999999987753110011


Q ss_pred             cccCcHHHH---hcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          344 FRQLTVRDF---MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       344 ~~~~~v~~~---m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      +...++.++   |..            +++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+..
T Consensus       179 ~~~~~v~~l~~~m~~------------~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~-~~~Giit~~dl~~~~~~  243 (334)
T 2qrd_G          179 MLRVPLNQMTIGTWS------------NLATASMETKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQD  243 (334)
T ss_dssp             GCCCBGGGSSCSBCS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEETHHHHHHHTT
T ss_pred             hhhCcHHHhCCcccC------------CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCC-cEEEEEEHHHHHHHhhc
Confidence            234578884   553            789999999999999999999999999999887 99999999999998765

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.86  E-value=3.1e-21  Score=188.60  Aligned_cols=205  Identities=13%  Similarity=0.127  Sum_probs=160.7

Q ss_pred             CCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCC--CCCccccccc
Q 013669          195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCK--GRDWFDIIAS  272 (438)
Q Consensus       195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~--~~~~~~~l~~  272 (438)
                      ...+++++|...  .+++++++++++.+|++.|.+++++++||+|.+.++++|++|..|++..+....  .......+..
T Consensus        33 ~~~~v~dim~p~--~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~  110 (330)
T 2v8q_E           33 KSHRCYDLIPTS--SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEE  110 (330)
T ss_dssp             HHSBGGGGSCSE--EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGG
T ss_pred             HcCcHhhhccCC--CcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhh
Confidence            345699999311  679999999999999999999999999999986468999999999998764321  0001111111


Q ss_pred             CC-------ccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc---ccc
Q 013669          273 QP-------ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE---LFS  342 (438)
Q Consensus       273 ~~-------v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~---~~~  342 (438)
                      .+       +++    +|.+ +++++.+++++.++++.|.+++++++||+|+++|+++|++|.+|++..+....   ...
T Consensus       111 ~~~~~~~~~~~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~  185 (330)
T 2v8q_E          111 HKIETWREVYLQ----DSFK-PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKP  185 (330)
T ss_dssp             CBHHHHHHHHSS----SSCC-CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCC
T ss_pred             ccHHHHHHHHhh----cccC-CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCch
Confidence            22       234    5776 89999999999999999999999999999852489999999999998764210   011


Q ss_pred             ccccCcHHHH--hcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          343 NFRQLTVRDF--MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       343 ~~~~~~v~~~--m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .+...++.++  |..           .+++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+..
T Consensus       186 ~~~~~~v~~~~v~~~-----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~-~l~Giit~~dl~~~~~~  251 (330)
T 2v8q_E          186 EFMSKSLEELQIGTY-----------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG-RVVDIYSKFDVINLAAE  251 (330)
T ss_dssp             GGGGSBHHHHTCSBC-----------SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTS-BEEEEEEGGGTGGGGGS
T ss_pred             hhhcCCHHHhcccCc-----------CCceEECCCCCHHHHHHHHHHcCCCeEEEECCCC-cEEEEEEHHHHHHHHhc
Confidence            2234566666  320           2789999999999999999999999999999887 99999999999998764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.81  E-value=4.1e-20  Score=163.27  Aligned_cols=129  Identities=29%  Similarity=0.476  Sum_probs=112.1

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc-----------
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE-----------  339 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~-----------  339 (438)
                      ...++++    +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|+++.+....           
T Consensus        16 ~~~~V~d----iM~~-~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~   89 (170)
T 4esy_A           16 RQVPIRD----ILTS-PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWIYEASEILSRA   89 (170)
T ss_dssp             HTSBGGG----GCCS-CCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTT
T ss_pred             cCCCHHH----hcCC-CCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhccccchhhhhhhc
Confidence            4568999    8987 8999999999999999999999999999998 899999999999976543211           


Q ss_pred             --------cccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHH
Q 013669          340 --------LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRD  411 (438)
Q Consensus       340 --------~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~D  411 (438)
                              .+......++.++|++            ++++|++++++.+|+++|.+++++++||+|+ | +++|+||++|
T Consensus        90 ~~~~~~~~~~~~~~~~~v~~im~~------------~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~lvGivt~~D  155 (170)
T 4esy_A           90 IPAPEVEHLFETGRKLTASAVMTQ------------PVVTAAPEDSVGSIADQMRRHGIHRIPVVQD-G-VPVGIVTRRD  155 (170)
T ss_dssp             SCHHHHHHHHHHHTTCBHHHHCBC------------CSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-T-EEEEEEEHHH
T ss_pred             cchhhHHhhhccccccchhhhccc------------CcccCCcchhHHHHHHHHHHcCCcEEEEEEC-C-EEEEEEEHHH
Confidence                    1112345689999985            8999999999999999999999999999984 5 9999999999


Q ss_pred             HHHHhhcC
Q 013669          412 VISCFIFE  419 (438)
Q Consensus       412 Il~~l~~e  419 (438)
                      |+++++.+
T Consensus       156 il~~l~~~  163 (170)
T 4esy_A          156 LLKLLLLE  163 (170)
T ss_dssp             HTTTSCCC
T ss_pred             HHHHHHhc
Confidence            99998754

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.80  E-value=5.9e-19  Score=156.22  Aligned_cols=129  Identities=14%  Similarity=0.233  Sum_probs=111.2

Q ss_pred             cccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccC
Q 013669          270 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL  347 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~~~~~~  347 (438)
                      +...++++    +|++ .+++++.+++++.+|++.|.+++++++||+++ + ++++|+||.+|++..+...      ...
T Consensus        39 l~~~~v~d----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-~~~~lvGivt~~dl~~~~~~~------~~~  107 (172)
T 3lhh_A           39 LDERTISS----LMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN-NVDDMVGIISAKQLLSESIAG------ERL  107 (172)
T ss_dssp             ----CTTT----TSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS-STTSEEEEEEHHHHHHHHHTT------CCC
T ss_pred             cCCCCHHH----hCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-CCCeEEEEEEHHHHHHHHhhc------Ccc
Confidence            35668888    7883 27899999999999999999999999999997 5 8999999999999887542      146


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCc
Q 013669          348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNH  423 (438)
Q Consensus       348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~  423 (438)
                      ++.++| .            +++++.+++++.+|+++|.+++++++||+|++| +++|+||++||++.+..+..+.
T Consensus       108 ~v~~im-~------------~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g-~lvGiit~~Dil~~l~~~~~de  169 (172)
T 3lhh_A          108 ELVDLV-K------------NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYG-DLKGLVTLQDMMDALTGEFFQE  169 (172)
T ss_dssp             CGGGGC-B------------CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHTTCC--
T ss_pred             cHHHHh-c------------CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCC-CEEEEeeHHHHHHHHhCCCccc
Confidence            899999 5            889999999999999999999999999999988 9999999999999999765443

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.78  E-value=3e-19  Score=155.60  Aligned_cols=128  Identities=18%  Similarity=0.250  Sum_probs=108.7

Q ss_pred             cCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-ccccccCcH
Q 013669          272 SQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-FSNFRQLTV  349 (438)
Q Consensus       272 ~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~-~~~~~~~~v  349 (438)
                      ..++++    +|.+ ++++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|++..+..... ...+...++
T Consensus        14 ~~~~~~----iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v   88 (156)
T 3k6e_A           14 LGQEET----FLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDLSQEIMADTDI   88 (156)
T ss_dssp             HTTGGG----GEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBG
T ss_pred             hccHHH----hCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhcccccccccccCH
Confidence            346677    7775 47899999999999999999999999999997 7999999999999887654322 123346789


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      .++|.+            +++++++++++.+|+++|.+++  .+||||++| +++|+||++||++++...
T Consensus        89 ~~im~~------------~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g-~l~GiiT~~Dil~~~~~~  143 (156)
T 3k6e_A           89 VHMTKT------------DVAVVSPDFTITEVLHKLVDES--FLPVVDAEG-IFQGIITRKSILKAVNAL  143 (156)
T ss_dssp             GGTCBC------------SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTS-BEEEEEEHHHHHHHHHHH
T ss_pred             HHhhcC------------CceecccccHHHHHHHHHHHcC--CeEEEecCC-EEEEEEEHHHHHHHHHHH
Confidence            999985            8999999999999999999875  499999998 999999999999998653

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.78  E-value=1.6e-18  Score=145.82  Aligned_cols=125  Identities=20%  Similarity=0.273  Sum_probs=109.1

Q ss_pred             ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCc
Q 013669          271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLT  348 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~  348 (438)
                      ...++++    +|++ ..++++.+++++.+|++.|.+++++++||+++ + |+++|+||.+|++..+....     ...+
T Consensus         4 ~~~~v~~----iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~~Givt~~dl~~~~~~~~-----~~~~   73 (130)
T 3i8n_A            4 QDVPVTQ----VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE-QKDNIIGFVHRLELFKMQQSGS-----GQKQ   73 (130)
T ss_dssp             ---CCTT----TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS-STTCEEEECCHHHHHHHHHTTT-----TTSB
T ss_pred             CcCCHhh----CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-CCCcEEEEEEHHHHHHHHhcCC-----CcCC
Confidence            5568888    7875 25679999999999999999999999999997 5 89999999999998875432     2568


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      +.++|.             +++++.+++++.+|++.|.+++++++||+|++| +++|+||++||++.+..|
T Consensus        74 v~~~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~~vGivt~~dil~~l~ge  130 (130)
T 3i8n_A           74 LGAVMR-------------PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYG-TVLGLVTLEDIFEHLVGE  130 (130)
T ss_dssp             HHHHSE-------------ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHHHHHTC
T ss_pred             HHHHhc-------------CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCC-CEEEEEEHHHHHHHHcCC
Confidence            999995             678999999999999999999999999999988 999999999999998753

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.77  E-value=3.8e-18  Score=159.71  Aligned_cols=190  Identities=13%  Similarity=0.197  Sum_probs=137.4

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccc--------
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD--------  268 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~--------  268 (438)
                      .+|+++|.    .+++++.+++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+........+.        
T Consensus         7 ~~v~~im~----~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~   81 (245)
T 3l2b_A            7 LKVEDLEM----DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDN   81 (245)
T ss_dssp             CBGGGSCC----BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHH
T ss_pred             CcHHHhcC----CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHH
Confidence            56999998    779999999999999999999999999999987 89999999999999886432111000        


Q ss_pred             --------------------------ccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC----
Q 013669          269 --------------------------IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ----  318 (438)
Q Consensus       269 --------------------------~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----  318 (438)
                                                .+....+.+    ++.+..++.+. +  -.++...+.+.+++++++++..    
T Consensus        82 v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~----~~~~~~ivIvg-d--r~~~~~~~i~~~~~~liit~~~~~~~  154 (245)
T 3l2b_A           82 ILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKE----FISEGDIAIAG-D--RAEIQAELIELKVSLLIVTGGHTPSK  154 (245)
T ss_dssp             HHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGG----TCCTTCEEEEC-S--CHHHHHHHHHTTCSEEEECTTCCCCH
T ss_pred             HHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHh----cCCCCCEEEEC-C--CHHHHHHHHHcCCCEEEECCCCCCCH
Confidence                                      000111222    33443444442 2  3688888999999999888531    


Q ss_pred             -------CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhc-ccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCC
Q 013669          319 -------QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN-AVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSV  390 (438)
Q Consensus       319 -------~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~-~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i  390 (438)
                             ++.+..+.+..|.......  .   ....++.++|+ .            +++++++++++.+++++|.++++
T Consensus       155 ~v~~~a~~~~~~~i~t~~d~~~~~~~--~---~~~~~v~~im~~~------------~~~~~~~~~~~~~~~~~m~~~~~  217 (245)
T 3l2b_A          155 EIIELAKKNNITVITTPHDSFTASRL--I---VQSLPVDYVMTKD------------NLVAVSTDDLVEDVKVTMSETRY  217 (245)
T ss_dssp             HHHHHHHHHTCEEEECSSCHHHHHHH--G---GGGSBHHHHSBCT------------TCCCEETTSBHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCeEEEeCCChHHHHHH--H---hcCCceeeEecCC------------ccEEECCCCcHHHHHHHHHhcCC
Confidence                   1123455666665443221  1   13568999998 4            88999999999999999999999


Q ss_pred             CEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          391 HRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       391 ~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                      +++||+|++| +++|+||.+||+++.
T Consensus       218 ~~~pVvd~~~-~~~Giit~~dll~~~  242 (245)
T 3l2b_A          218 SNYPVIDENN-KVVGSIARFHLISTH  242 (245)
T ss_dssp             SEEEEECTTC-BEEEEEECC------
T ss_pred             ceEEEEcCCC-eEEEEEEHHHhhchh
Confidence            9999999987 999999999999864

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.77  E-value=1.9e-18  Score=145.61  Aligned_cols=125  Identities=13%  Similarity=0.220  Sum_probs=108.3

Q ss_pred             CccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHH
Q 013669          274 PISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDF  352 (438)
Q Consensus       274 ~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~  352 (438)
                      ++++    +|++ .+++++.+++++.+|++.|.+++++++||+++++++++|++|.+|++..+.....   +...++.++
T Consensus         3 ~v~~----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~---~~~~~v~~~   75 (130)
T 3hf7_A            3 SVND----IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE---FTKEIMLRA   75 (130)
T ss_dssp             BHHH----HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC---CCHHHHHHH
T ss_pred             CHHH----hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc---cchhhHHHh
Confidence            4666    6864 3689999999999999999999999999997535899999999999998765332   234578999


Q ss_pred             hcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          353 MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       353 m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      |.             +++++.+++++.+|++.|.+++++++||+|++| +++|+||.+||++.+..+
T Consensus        76 m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~lvGiit~~Dil~~l~g~  128 (130)
T 3hf7_A           76 AD-------------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYG-DIQGLVTVEDILEEIVGD  128 (130)
T ss_dssp             SB-------------CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTS-CEEEEEEHHHHHHHHHC-
T ss_pred             cc-------------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCC-CEEEEeeHHHHHHHHhCC
Confidence            85             789999999999999999999999999999988 999999999999999864

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.77  E-value=1.1e-18  Score=146.17  Aligned_cols=123  Identities=16%  Similarity=0.329  Sum_probs=106.5

Q ss_pred             CCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          273 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       273 ~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      .++++    +|++ .+++++.+++++.++++.|.+++++++||+++ + |+++|+||.+|++..+....     ...++.
T Consensus         3 ~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~vGivt~~dl~~~~~~~~-----~~~~v~   72 (127)
T 3nqr_A            3 QRVRD----IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE-DKDHIEGILMAKDLLPFMRSDA-----EAFSMD   72 (127)
T ss_dssp             CBHHH----HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGGSTTC-----CCCCHH
T ss_pred             cCHHH----hcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHhccC-----CCCCHH
Confidence            45677    6875 24899999999999999999999999999997 5 89999999999988764321     356899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      ++|.             +++++.+++++.+|+++|.+++++++||+|++| +++|+||++||++.+..|
T Consensus        73 ~~m~-------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~~Giit~~dll~~l~ge  127 (127)
T 3nqr_A           73 KVLR-------------TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFG-GVSGLVTIEDILELIVGE  127 (127)
T ss_dssp             HHCB-------------CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTS-CEEEEEEHHHHHHHC---
T ss_pred             HHcC-------------CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCC
Confidence            9996             578999999999999999999999999999988 999999999999998753

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.76  E-value=5.1e-18  Score=146.04  Aligned_cols=125  Identities=17%  Similarity=0.311  Sum_probs=111.7

Q ss_pred             cccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccC
Q 013669          270 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQL  347 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~~~~~~  347 (438)
                      +...++++    +|++ .+++++.+++++.++++.|.+++++++||+|+ + |+++|+||.+|++..+....      ..
T Consensus        20 l~~~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~lvGivt~~dl~~~~~~~~------~~   88 (148)
T 3lv9_A           20 FEEKKIRE----IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK-NKDDILGFVHIRDLYNQKINEN------KI   88 (148)
T ss_dssp             GGTCBGGG----TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS-STTSEEEEEEHHHHHHHHHHHS------CC
T ss_pred             cCCCCHHH----ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHhcCC------Cc
Confidence            35678999    7874 36889999999999999999999999999997 5 89999999999998865321      46


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      ++.++| .            +++++++++++.+|+++|.+++++++||+|++| +++|+||..||++.+..+
T Consensus        89 ~v~~~m-~------------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dil~~l~~~  146 (148)
T 3lv9_A           89 ELEEIL-R------------DIIYISENLTIDKALERIRKEKLQLAIVVDEYG-GTSGVVTIEDILEEIVGE  146 (148)
T ss_dssp             CGGGTC-B------------CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTS-SEEEEEEHHHHHHHHHHT
T ss_pred             cHHHhc-C------------CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCc
Confidence            799999 4            889999999999999999999999999999988 999999999999999875

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.76  E-value=8.7e-19  Score=148.84  Aligned_cols=129  Identities=18%  Similarity=0.304  Sum_probs=106.9

Q ss_pred             CCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          273 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       273 ~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      .++++    +|++ .+++++.+++++.+|++.|.+++++++||+++ + ++++|+||.+|++..+....    ....++.
T Consensus         3 ~~v~~----iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-~~~~~vGivt~~dl~~~~~~~~----~~~~~v~   73 (136)
T 3lfr_A            3 LQVRD----IMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE-SHDDVLGVLLAKDLLPLILKAD----GDSDDVK   73 (136)
T ss_dssp             CBHHH----HSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGGGSSS----GGGCCGG
T ss_pred             CChHh----ccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHHhcc----CCCcCHH
Confidence            45677    6873 26899999999999999999999999999997 5 79999999999998765321    2356899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcc
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHL  424 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~  424 (438)
                      ++|+             +++++.+++++.+|+++|.+++++++||+|++| +++|+||++||++.+..+-.+.+
T Consensus        74 ~~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g-~lvGiit~~Dil~~l~~~~~de~  133 (136)
T 3lfr_A           74 KLLR-------------PATFVPESKRLNVLLREFRANHNHMAIVIDEYG-GVAGLVTIEDVLEQIVGDIEDEH  133 (136)
T ss_dssp             GTCB-------------CCCEEETTCBHHHHHHHHHHHTCCEEEEECTTS-CEEEEEEHHHHHTTC--------
T ss_pred             HHcC-------------CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCCCcCcc
Confidence            9996             689999999999999999999999999999988 99999999999999987554433

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.75  E-value=3.5e-18  Score=143.69  Aligned_cols=124  Identities=16%  Similarity=0.344  Sum_probs=107.6

Q ss_pred             ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      ...++++    +|++ .+++++.+++++.++++.|.+++++++||++++.++++|+||.+|++..+..       ...++
T Consensus         3 ~~~~v~d----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~-------~~~~v   71 (129)
T 3jtf_A            3 AERTVAD----IMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE-------PALDI   71 (129)
T ss_dssp             -CCBHHH----HCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC-------TTSCG
T ss_pred             CCCCHHH----hCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc-------CCcCH
Confidence            3457788    7873 2678999999999999999999999999999622899999999999887542       24578


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      .++|.             +++++.+++++.+|+++|.+++++++||+|++| +++|+||++||++.+..|
T Consensus        72 ~~~m~-------------~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g-~~~Giit~~Dil~~l~ge  127 (129)
T 3jtf_A           72 RSLVR-------------PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHG-GISGLVTMEDVLEQIVGD  127 (129)
T ss_dssp             GGGCB-------------CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-C-CEEEEEEHHHHHHHHHHT
T ss_pred             HHHhC-------------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCC-CEEEEEEHHHHHHHHhCC
Confidence            89986             688999999999999999999999999999988 999999999999999875

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.75  E-value=1.1e-18  Score=153.94  Aligned_cols=130  Identities=24%  Similarity=0.339  Sum_probs=109.8

Q ss_pred             CCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC-----------
Q 013669          196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR-----------  264 (438)
Q Consensus       196 ~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~-----------  264 (438)
                      ..+|+++|+    .+++++.+++++.+|+++|.+++++++||+|++ |+++|+||.+|+++.+......           
T Consensus        17 ~~~V~diM~----~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~   91 (170)
T 4esy_A           17 QVPIRDILT----SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWIYEASEILSRAIP   91 (170)
T ss_dssp             TSBGGGGCC----SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSC
T ss_pred             CCCHHHhcC----CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccccchhhhhhhccc
Confidence            456999998    789999999999999999999999999999987 8999999999998765432100           


Q ss_pred             -----CcccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          265 -----DWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       265 -----~~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                           .........++++    +|++ +++++.+++++.+|+++|.+++++++||+|  +|+++|+||.+||++++..
T Consensus        92 ~~~~~~~~~~~~~~~v~~----im~~-~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A           92 APEVEHLFETGRKLTASA----VMTQ-PVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HHHHHHHHHHHTTCBHHH----HCBC-CSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSCC
T ss_pred             hhhHHhhhccccccchhh----hccc-CcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence                 0011123457788    7987 899999999999999999999999999998  6899999999999988653

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.74  E-value=1.2e-17  Score=138.52  Aligned_cols=119  Identities=28%  Similarity=0.377  Sum_probs=107.0

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  353 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m  353 (438)
                      ++++    +|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|+++.+|++..+...       ..++.++|
T Consensus         2 ~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~-------~~~v~~~~   68 (122)
T 3kpb_A            2 LVKD----ILSK-PPITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQN-------KKTIEEIM   68 (122)
T ss_dssp             BHHH----HCCS-CCCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTT-------CCBGGGTS
T ss_pred             chHH----hhCC-CCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhc-------ccCHHHHh
Confidence            4566    6887 8899999999999999999999999999997 89999999999999887642       23799999


Q ss_pred             cccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          354 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .+            +++++.+++++.++++.|.+++++++||+|++| +++|+||..||++++..
T Consensus        69 ~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g-~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           69 TR------------NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYR-RVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             BS------------SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHC-
T ss_pred             cC------------CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCC-CEEEEEeHHHHHHHhhc
Confidence            74            889999999999999999999999999999988 99999999999998865

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.74  E-value=3.5e-18  Score=148.03  Aligned_cols=130  Identities=17%  Similarity=0.215  Sum_probs=110.0

Q ss_pred             ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEE-eCCCCeEEEEEeHHHHHHHhcCCccccccccCc
Q 013669          271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVV-EGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLT  348 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~  348 (438)
                      ...++++    +|++ .+++++.+++++.+|++.|.+++++++||+ ++++|+++|+||.+|++..+...      ...+
T Consensus        18 ~~~~v~~----iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~------~~~~   87 (153)
T 3oco_A           18 NDKVASD----VMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID------DKAK   87 (153)
T ss_dssp             HHCBHHH----HSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH------TTSB
T ss_pred             CCCEeee----EecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC------CCCc
Confidence            4568888    7874 368999999999999999999999999999 54248999999999999886532      1568


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcc
Q 013669          349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHL  424 (438)
Q Consensus       349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~  424 (438)
                      +.++| .            +++++.+++++.+|++.|.+++++++||+|++| +++|+||++||++.+..+-.+.+
T Consensus        88 v~~~m-~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g-~~vGivt~~dil~~l~~~~~de~  149 (153)
T 3oco_A           88 ISTIM-R------------DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYG-GTSGIITDKDVYEELFGNLRDEQ  149 (153)
T ss_dssp             GGGTC-B------------CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTS-CEEEEECHHHHHHHHHC------
T ss_pred             HHHHh-C------------CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCC-CEEEEeeHHHHHHHHhccCCCcc
Confidence            99999 4            899999999999999999999999999999988 99999999999999997654443

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.73  E-value=6.4e-17  Score=137.93  Aligned_cols=137  Identities=18%  Similarity=0.383  Sum_probs=110.9

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      ..++++++.. +|.. +++++.+++++.+|++.|.+++++++||+|+ +|+++|+++.+|++..+.... + .....++.
T Consensus         6 ~~~~v~~~~~-~~~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~-~-~~~~~~v~   80 (144)
T 2nyc_A            6 LKIPIGDLNI-ITQD-NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGI-Y-NDLSLSVG   80 (144)
T ss_dssp             GGSBGGGSSC-CBCS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC------CCSBHH
T ss_pred             hhcchhhcCC-CCCC-CceEECCCCcHHHHHHHHHHcCcceeeEEcC-CCcEEEEEcHHHHHHHhcccc-c-ccCCccHH
Confidence            4567777554 5665 8999999999999999999999999999997 799999999999998875421 1 12356899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      ++|.....      ...+++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++.+..+
T Consensus        81 ~~m~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dil~~l~~~  142 (144)
T 2nyc_A           81 EALMRRSD------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYILLG  142 (144)
T ss_dssp             HHHHHCC------------CEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHHC
T ss_pred             HHHhcCcc------ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCC-CEEEEEEHHHHHHHHHhc
Confidence            99974100      001578999999999999999999999999999887 999999999999998764

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.73  E-value=4.8e-17  Score=137.84  Aligned_cols=125  Identities=26%  Similarity=0.424  Sum_probs=110.3

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHH-HHHhcCCccccccccCcH
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-RHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl-~~~l~~~~~~~~~~~~~v  349 (438)
                      ...++++    +|.+ ++.++.+++++.++++.|.+++.+++||+|+ +|+++|+++.+|+ +..+....    ....++
T Consensus         6 ~~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~~~~~v   75 (138)
T 2p9m_A            6 KNIKVKD----VMTK-NVITAKRHEGVVEAFEKMLKYKISSLPVIDD-ENKVIGIVTTTDIGYNLIRDKY----TLETTI   75 (138)
T ss_dssp             TTCBGGG----TSBC-SCCCEETTSBHHHHHHHHHHHTCCEEEEECT-TCBEEEEEEHHHHHHHHTTTCC----CSSCBH
T ss_pred             ccCCHHH----hhcC-CceEECCCCcHHHHHHHHHHCCCcEEEEECC-CCeEEEEEEHHHHHHHHHhhcc----cCCcCH
Confidence            4567888    7876 8899999999999999999999999999997 7999999999999 88765322    235689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCC-----CCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKS-----VHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~-----i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .++|..            ++.++++++++.++++.|.+++     ++++||+|++| +++|+||..||++.+..
T Consensus        76 ~~~m~~------------~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           76 GDVMTK------------DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNN-KLVGIISDGDIIRTISK  136 (138)
T ss_dssp             HHHSCS------------SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTS-BEEEEEEHHHHHHHHHH
T ss_pred             HHHhCC------------CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCC-eEEEEEEHHHHHHHHHh
Confidence            999985            7899999999999999999999     99999999887 99999999999998865

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.73  E-value=5.6e-17  Score=136.64  Aligned_cols=123  Identities=24%  Similarity=0.391  Sum_probs=110.1

Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  351 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~  351 (438)
                      ..++++    +|.+ ++.++.+++++.++++.|.+++++++||+|  +|+++|++|.+|++..+.....    ...++.+
T Consensus         3 ~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~----~~~~v~~   71 (133)
T 2ef7_A            3 EEIVKE----YMKT-QVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKS----LETKAEE   71 (133)
T ss_dssp             CCBGGG----TSBC-SCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTCC----TTCBGGG
T ss_pred             cccHHH----hccC-CCEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEcHHHHHHHHhcCCC----cccCHHH
Confidence            457888    7887 799999999999999999999999999999  6899999999999988764321    2468999


Q ss_pred             HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          352 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       352 ~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      +|..            ++.++++++++.++++.|.+++++++||+|++| +++|+||..||++.+..
T Consensus        72 ~~~~------------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           72 FMTA------------SLITIREDSPITGALALMRQFNIRHLPVVDDKG-NLKGIISIRDITRAIDD  125 (133)
T ss_dssp             TSEE------------CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHH
T ss_pred             HcCC------------CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCC-eEEEEEEHHHHHHHHHH
Confidence            9975            889999999999999999999999999999887 99999999999998875

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.73  E-value=2.3e-17  Score=146.12  Aligned_cols=131  Identities=16%  Similarity=0.198  Sum_probs=112.3

Q ss_pred             ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      ...++++    +|++ .+++++.+++++.++++.|.+++++++||++++.++++|+|+.+|++..+...      ...++
T Consensus        34 ~~~~v~d----iM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~------~~~~v  103 (173)
T 3ocm_A           34 AERSIRS----IMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE------GRVRR  103 (173)
T ss_dssp             TTSCSTT----TSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH------SSCCG
T ss_pred             CCCCHHH----hCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC------Ccchh
Confidence            5678899    8974 36899999999999999999999999999986228999999999999886432      13467


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcccc
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDN  426 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~~  426 (438)
                      . ++.             +++++.+++++.+|+++|.+++++++||+|++| +++|+||..||++.+..+..+.++.
T Consensus       104 ~-~~~-------------~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g-~lvGiIT~~Dil~~l~~~i~de~~~  165 (173)
T 3ocm_A          104 N-RLR-------------DPIIVHESIGILRLMDTLKRSRGQLVLVADEFG-AIEGLVTPIDVFEAIAGEFPDEDEL  165 (173)
T ss_dssp             G-GSB-------------CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTC-CEEEEECHHHHHHHHHCCCCCTTSC
T ss_pred             H-hcC-------------CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCC-CEEEEEeHHHHHHHHhCcCCCcccc
Confidence            6 443             789999999999999999999999999999988 9999999999999999876665553

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.72  E-value=2.3e-17  Score=138.31  Aligned_cols=124  Identities=12%  Similarity=0.123  Sum_probs=109.3

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      ...++++    +|.+ ++.++.+++++.++++.|.+++++++||+|+  |+++|++|.+|++..+.....    ...++.
T Consensus         3 ~s~~v~~----~m~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~----~~~~v~   71 (128)
T 3gby_A            3 ASVTFSY----LAET-DYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPT----VKEKLG   71 (128)
T ss_dssp             TTCBGGG----GCBC-CSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCC----TTCBCC
T ss_pred             cceEHHH----hhcC-CcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCc----ccCcHH
Confidence            3467888    7887 7999999999999999999999999999994  899999999999987653221    235788


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      ++|.+            ++.++.+++++.++++.|.+++++++||+|++| +++|+||.+||++++..
T Consensus        72 ~~m~~------------~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g-~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           72 EELLE------------TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDG-RYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             GGGCB------------CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTC-BEEEEEEHHHHHHHHHT
T ss_pred             HHccC------------CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCC-CEEEEEEHHHHHHHHHh
Confidence            99985            889999999999999999999999999999887 99999999999998864

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.72  E-value=5.5e-17  Score=138.30  Aligned_cols=122  Identities=17%  Similarity=0.221  Sum_probs=107.7

Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCC--eEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQK--KIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~--~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      ..++++    +|.+ +++++.+++++.++++.|.+++++++||+|+ ++  +++|+||.+|++..+.....    ...++
T Consensus         4 ~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~~~Givt~~dl~~~~~~~~~----~~~~v   73 (141)
T 2rih_A            4 AIRTSE----LLKR-PPVSLPETATIREVATELAKNRVGLAVLTAR-DNPKRPVAVVSERDILRAVAQRLD----LDGPA   73 (141)
T ss_dssp             -CBGGG----GCCS-CCEEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEEEEHHHHHHHHHTTCC----TTSBS
T ss_pred             ceEHHH----HhcC-CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCcceeEEEEEHHHHHHHHhcCCC----CCCCH
Confidence            356788    7886 8999999999999999999999999999997 67  99999999999988754321    25689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                      .++|..            +++++.++ ++.+|++.|.+++++++||+|++| +++|+||.+||++.+.
T Consensus        74 ~~~m~~------------~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g-~~~Giit~~dll~~~~  127 (141)
T 2rih_A           74 MPIANS------------PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNG-ELVGVLSIRDLCFERA  127 (141)
T ss_dssp             GGGCBC------------CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHSCHH
T ss_pred             HHHcCC------------CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCC-cEEEEEEHHHHHHHHH
Confidence            999974            88999999 999999999999999999999887 9999999999988665

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.72  E-value=1.1e-16  Score=135.64  Aligned_cols=125  Identities=22%  Similarity=0.415  Sum_probs=109.8

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcH
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTV  349 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~-~l~~~~~~~~~~~~~v  349 (438)
                      ...++++    +|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|++. ++....    ....++
T Consensus         5 ~~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~~~~~v   74 (138)
T 2yzi_A            5 MKAPIKV----YMTK-KLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPGL----PYDIPV   74 (138)
T ss_dssp             TTSBGGG----TCBC-CCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCC----CTTSBG
T ss_pred             hhhhHHH----HhcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHhcCC----cccCCH
Confidence            4567888    7886 8999999999999999999999999999997 799999999999974 433221    235689


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      .++|..            +++++++++++.++++.|.+++++++ |+|++| +++|+||..||++.+..+
T Consensus        75 ~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g-~~~Giit~~dil~~~~~~  130 (138)
T 2yzi_A           75 ERIMTR------------NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEG-KIVGIFTLSDLLEASRRR  130 (138)
T ss_dssp             GGTCBC------------SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETT-EEEEEEEHHHHHHHHHCC
T ss_pred             HHHhhC------------CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCC-CEEEEEEHHHHHHHHHHH
Confidence            999985            88999999999999999999999999 999887 999999999999998864

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.72  E-value=1.2e-16  Score=137.32  Aligned_cols=127  Identities=18%  Similarity=0.270  Sum_probs=111.5

Q ss_pred             CCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccc
Q 013669          192 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA  271 (438)
Q Consensus       192 ~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~  271 (438)
                      ..+...+|+++|...  .+++++++++++.+|+++|.+++++++||+|++.++++|+||..|+++.+...         .
T Consensus        18 ~~l~~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~   86 (148)
T 3lv9_A           18 FEFEEKKIREIMVPR--TDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINE---------N   86 (148)
T ss_dssp             CGGGTCBGGGTSEET--TTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHH---------S
T ss_pred             hccCCCCHHHccccH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcC---------C
Confidence            345667899999832  37999999999999999999999999999997536999999999999887643         1


Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ..++++    +| + ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+.
T Consensus        87 ~~~v~~----~m-~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           87 KIELEE----IL-R-DIIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             CCCGGG----TC-B-CCEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHH
T ss_pred             CccHHH----hc-C-CCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            467888    78 5 7899999999999999999999999999997 799999999999998864

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.71  E-value=4.6e-17  Score=142.80  Aligned_cols=134  Identities=19%  Similarity=0.269  Sum_probs=114.5

Q ss_pred             ccccccCCccccccCCCCC--CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccccc
Q 013669          267 FDIIASQPISDLGLPFMSS--DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF  344 (438)
Q Consensus       267 ~~~l~~~~v~~l~l~~m~~--~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~  344 (438)
                      ...+...++++    +|.+  ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|++..+....  ...
T Consensus        18 ~~~l~~~~v~d----im~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~--~~~   90 (165)
T 3fhm_A           18 YFQGMATFVKD----LLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQG--AAS   90 (165)
T ss_dssp             CCSSSSCBHHH----HHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHG--GGG
T ss_pred             hHhhhhcCHHH----HhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHhcC--Ccc
Confidence            33456678888    7874  36999999999999999999999999999997 799999999999998875421  122


Q ss_pred             ccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCC
Q 013669          345 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPP  421 (438)
Q Consensus       345 ~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~  421 (438)
                      ...++.++|..            +++++.+++++.+|+++|.+++++++||+|+ | +++|+||..||++++..+..
T Consensus        91 ~~~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~~~Giit~~dil~~~~~~~~  153 (165)
T 3fhm_A           91 LQQSVSVAMTK------------NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-G-RLAGIISIGDVVKARIGEIE  153 (165)
T ss_dssp             GTSBGGGTSBS------------SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHTTCC--
T ss_pred             ccCCHHHHhcC------------CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHHHHHH
Confidence            45789999985            8899999999999999999999999999999 7 99999999999999986543

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.71  E-value=4.4e-17  Score=141.82  Aligned_cols=126  Identities=15%  Similarity=0.220  Sum_probs=108.0

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      ++.++|...  .+++++.+++|+.+|+.+|.+++++++||+|++ ++++|++|.+|+++++....  .....+...++.+
T Consensus        16 ~~~~iM~P~--~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~--~~~~~~~~~~v~~   90 (156)
T 3k6e_A           16 QEETFLTPA--KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHD--LSQEIMADTDIVH   90 (156)
T ss_dssp             TGGGGEEET--TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHT--CCHHHHTTSBGGG
T ss_pred             cHHHhCcch--hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcc--cccccccccCHHH
Confidence            478888743  789999999999999999999999999999977 89999999999998876541  1222345678889


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                          +|.+ ++.++.+++++.++++.|.++++  +||+|+ +|+++|+||.+||++.+.
T Consensus        91 ----im~~-~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~-~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           91 ----MTKT-DVAVVSPDFTITEVLHKLVDESF--LPVVDA-EGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             ----TCBC-SCCCBCTTCCHHHHHHHTTTSSE--EEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ----hhcC-CceecccccHHHHHHHHHHHcCC--eEEEec-CCEEEEEEEHHHHHHHHH
Confidence                7887 89999999999999999998764  999997 899999999999998874

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.71  E-value=6.6e-17  Score=148.12  Aligned_cols=162  Identities=13%  Similarity=0.177  Sum_probs=105.7

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      .++.++|.    .+++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|+.+.+            ...+++
T Consensus        13 ~~~~~~~~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~------------~~~~v~   75 (213)
T 1vr9_A           13 MKVKKWVT----QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLD------------LDSSVF   75 (213)
T ss_dssp             CBGGGGCB----SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSC------------TTSBSG
T ss_pred             cCHHHhhc----CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhc------------CCCcHH
Confidence            44778888    789999999999999999999999999999976 8999999999986533            135788


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhccc
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAV  356 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~  356 (438)
                      +    +|++ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|++..+....        .+.+.+...
T Consensus        76 ~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~Dil~~~~~~~--------~~~~~~~~l  141 (213)
T 1vr9_A           76 N----KVSL-PDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIEAL--------AMDVPGIRF  141 (213)
T ss_dssp             G----GCBC-TTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHHSC--------C--------
T ss_pred             H----HccC-CCEEECCCCcHHHHHHHHHHhCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHHh--------cCCCCcEEE
Confidence            8    7887 8999999999999999999999999999997 799999999999998865211        122333210


Q ss_pred             CCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCC
Q 013669          357 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE  400 (438)
Q Consensus       357 ~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g  400 (438)
                                 .+.+.....++.++.+.|.+++++.++|++.+|
T Consensus       142 -----------~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          142 -----------SVLLEDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             --------------------------------------------
T ss_pred             -----------EEEeCCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence                       111223344599999999999999999986654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.71  E-value=7e-17  Score=138.89  Aligned_cols=130  Identities=25%  Similarity=0.375  Sum_probs=107.8

Q ss_pred             cCCccccccCCCCCC-CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc----------c
Q 013669          272 SQPISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE----------L  340 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~-~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~----------~  340 (438)
                      ..++++    +|.+. +++++.+++++.++++.|.+++++++||+|+ +++++|+||.+|++..+....          .
T Consensus         4 ~~~v~~----im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~   78 (152)
T 4gqw_A            4 VYTVGE----FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE-DWKLVGLVSDYDLLALDSGDSTWKTFNAVQKL   78 (152)
T ss_dssp             CSBGGG----TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHTTCC----CCHHHHHHHTC
T ss_pred             eEEhhh----ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-CCeEEEEEEHHHHHHhhcccCcccchHHHHHH
Confidence            356778    67642 5899999999999999999999999999997 789999999999976432211          1


Q ss_pred             ccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          341 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       341 ~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      .......++.++|.+            +++++.+++++.+|+++|.+++++++||+|++| +++|+||.+||++++...
T Consensus        79 ~~~~~~~~v~~~m~~------------~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g-~~~Giit~~dil~~~~~~  144 (152)
T 4gqw_A           79 LSKTNGKLVGDLMTP------------APLVVEEKTNLEDAAKILLETKYRRLPVVDSDG-KLVGIITRGNVVRAALQI  144 (152)
T ss_dssp             -----CCBHHHHSEE------------SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTS-BEEEEEEHHHHHHHHHC-
T ss_pred             HHHhccccHHHhcCC------------CceEECCCCcHHHHHHHHHHCCCCEEEEECCCC-cEEEEEEHHHHHHHHHhc
Confidence            112235689999985            788999999999999999999999999999887 999999999999998853

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.71  E-value=1.1e-16  Score=133.09  Aligned_cols=117  Identities=21%  Similarity=0.338  Sum_probs=104.4

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  361 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  361 (438)
                      +|.+ ++.++.+++++.++++.|.+++.+++||+|  +|+++|+++.+|++..+....   .....++.++|.+      
T Consensus         6 ~m~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~~---~~~~~~v~~~m~~------   73 (125)
T 1pbj_A            6 VMVT-DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGD---DLAEVKVWEVMER------   73 (125)
T ss_dssp             HCBC-SCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTC---CTTTSBHHHHCBC------
T ss_pred             hcCC-CceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcCC---cccccCHHHHcCC------
Confidence            6776 899999999999999999999999999999  699999999999998765322   1235689999984      


Q ss_pred             CCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       362 ~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                            ++.++.+++++.++++.|.+++++++||+|+ | +++|+||.+||++++..
T Consensus        74 ------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~-~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           74 ------DLVTISPRATIKEAAEKMVKNVVWRLLVEED-D-EIIGVISATDILRAKMA  122 (125)
T ss_dssp             ------GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHHHC-
T ss_pred             ------CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-C-EEEEEEEHHHHHHHHHh
Confidence                  7899999999999999999999999999998 7 99999999999998875

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.71  E-value=4.1e-17  Score=137.45  Aligned_cols=124  Identities=18%  Similarity=0.305  Sum_probs=107.3

Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH-HhcCCccccccccCcHH
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH-LLLKPELFSNFRQLTVR  350 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~-~l~~~~~~~~~~~~~v~  350 (438)
                      ..++++    +|.+ +++++.+++++.++++.|.+++++++||+|+ +++++|+||.+|++. ++....   .....++.
T Consensus         7 ~~~v~~----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~   77 (133)
T 1y5h_A            7 MTTARD----IMNA-GVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGL---DPNTATAG   77 (133)
T ss_dssp             -CCHHH----HSEE-TCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTC---CTTTSBHH
T ss_pred             hcCHHH----HhcC-CceEeCCCCCHHHHHHHHHHhCCCeEEEECC-CCeEEEEEeHHHHHHHHHhcCC---CccccCHH
Confidence            357778    6876 7899999999999999999999999999987 799999999999984 543221   12356899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      ++|.+            +++++++++++.++++.|.+++++++||+|+ | +++|+||.+||++++..
T Consensus        78 ~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g-~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           78 ELARD------------SIYYVDANASIQEMLNVMEEHQVRRVPVISE-H-RLVGIVTEADIARHLPE  131 (133)
T ss_dssp             HHHTT------------CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHTCC-
T ss_pred             HHhcC------------CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-C-EEEEEEEHHHHHHHHHh
Confidence            99985            8899999999999999999999999999998 6 99999999999998765

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.70  E-value=1.5e-16  Score=131.74  Aligned_cols=119  Identities=25%  Similarity=0.430  Sum_probs=107.6

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +++++|.    .+++++.+++++.+|++.|.+++++++||+|++ |+++|++|..|+++++...          ..++.+
T Consensus         2 ~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~----------~~~v~~   66 (122)
T 3kpb_A            2 LVKDILS----KPPITAHSNISIMEAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQN----------KKTIEE   66 (122)
T ss_dssp             BHHHHCC----SCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTT----------CCBGGG
T ss_pred             chHHhhC----CCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhc----------ccCHHH
Confidence            5889998    779999999999999999999999999999976 8999999999999987653          237888


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                          +|.+ ++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||..|++..+..
T Consensus        67 ----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           67 ----IMTR-NVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ----TSBS-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC-
T ss_pred             ----HhcC-CCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhhc
Confidence                7876 8899999999999999999999999999997 7999999999999998753

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.70  E-value=5.3e-17  Score=139.80  Aligned_cols=129  Identities=20%  Similarity=0.264  Sum_probs=111.5

Q ss_pred             cccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc--cccccc
Q 013669          270 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL--FSNFRQ  346 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~--~~~~~~  346 (438)
                      +...++++    +|.+ .+++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|++..+.....  ......
T Consensus        12 l~~~~v~~----im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~   86 (150)
T 3lqn_A           12 FQQIFVKD----LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAMILDGILGLERIEFERLEE   86 (150)
T ss_dssp             HHHCBHHH----HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHTBCSSSBCGGGGGG
T ss_pred             hhcCChhh----cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHHHHHHHhhcccchhHHhc
Confidence            45668888    7874 26899999999999999999999999999997 8999999999999998754221  112346


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .++.++|.+            +++++.+++++.+|+++|.++++  +||+|++| +++|+||.+||++++..
T Consensus        87 ~~v~~~m~~------------~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g-~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           87 MKVEQVMKQ------------DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDG-YFEGILTRRAILKLLNK  143 (150)
T ss_dssp             CBGGGTCBS------------SCCEEETTCBHHHHHHHHHHCSE--EEEECTTC-BEEEEEEHHHHHHHHHH
T ss_pred             CCHHHHhcC------------CCceeCCCCCHHHHHHHHHhCCE--EEEECCCC-cEEEEEEHHHHHHHHHH
Confidence            789999985            88999999999999999999986  99999887 99999999999999875

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.70  E-value=3.7e-17  Score=142.18  Aligned_cols=118  Identities=16%  Similarity=0.352  Sum_probs=105.4

Q ss_pred             ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC-CeEEEEEeHHHHHHHhcCCccccccccCc
Q 013669          271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ-KKIVGNVSIRDIRHLLLKPELFSNFRQLT  348 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~-~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~  348 (438)
                      ...++++    +|++ .+++++.+++++.++++.|.+++++++||+++ + ++++|+||.+|++..+...      ...+
T Consensus        36 ~~~~v~d----iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~-~~~~lvGivt~~dl~~~~~~~------~~~~  104 (156)
T 3oi8_A           36 SDLEVRD----AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE-DKDEVLGILHAKDLLKYMFNP------EQFH  104 (156)
T ss_dssp             TTCBGGG----TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-STTCEEEEEEGGGGGGGSSCG------GGCC
T ss_pred             CCCCHhh----eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-CCCcEEEEEEHHHHHHHHHcC------Cccc
Confidence            5678899    7875 26899999999999999999999999999997 5 5999999999998875432      3568


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHH
Q 013669          349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVI  413 (438)
Q Consensus       349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl  413 (438)
                      +.++|.             +++++.+++++.+|++.|.+++++++||+|++| +++|+||++||+
T Consensus       105 v~~im~-------------~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g-~~~Givt~~Dil  155 (156)
T 3oi8_A          105 LKSILR-------------PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYG-GTSGLVTFEDII  155 (156)
T ss_dssp             HHHHCB-------------CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTS-SEEEEEEHHHHC
T ss_pred             HHHHcC-------------CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCC-CEEEEEEHHHhc
Confidence            999996             688999999999999999999999999999988 999999999986

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.69  E-value=1.7e-16  Score=138.51  Aligned_cols=126  Identities=21%  Similarity=0.231  Sum_probs=108.2

Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-----cccccc
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-----FSNFRQ  346 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~-----~~~~~~  346 (438)
                      ..++++    +|.+ +++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|++..+.....     ......
T Consensus         4 ~~~v~d----im~~-~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~   77 (160)
T 2o16_A            4 MIKVED----MMTR-HPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFE   77 (160)
T ss_dssp             CCBGGG----TSEE-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC---------CC
T ss_pred             cCcHHH----HhcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhhcccccccchhcc
Confidence            356788    7886 8899999999999999999999999999997 7999999999999887642100     011235


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                      .++.++|..            +++++++++++.+|++.|.+++++++||+|+ | +++|+||.+||++++.
T Consensus        78 ~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g-~lvGiit~~dil~~~~  134 (160)
T 2o16_A           78 TPLFEVMHT------------DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-D-VLVGIITDSDFVTIAI  134 (160)
T ss_dssp             CBHHHHSCS------------CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-T-EEEEEECHHHHHHHHH
T ss_pred             cCHHHHhcC------------CCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-C-EEEEEEEHHHHHHHHH
Confidence            689999985            8899999999999999999999999999998 6 9999999999999875

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.69  E-value=1.6e-16  Score=144.69  Aligned_cols=129  Identities=13%  Similarity=0.177  Sum_probs=110.4

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHc---CCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN---NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL  347 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~---~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~  347 (438)
                      ...++++    +|++ +++++.+++++.+|++.|.++   +++.+||+|+ +++++|+||.+|++..  .       ...
T Consensus        52 ~~~~v~~----iM~~-~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~--~-------~~~  116 (205)
T 3kxr_A           52 SENEIGR----YTDH-QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFKH--E-------PHE  116 (205)
T ss_dssp             CTTCGGG----GCBC-CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTTS--C-------TTS
T ss_pred             CcchHHh----hccC-ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHhC--C-------Ccc
Confidence            4568889    8987 899999999999999999997   8899999998 8999999999998643  1       245


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCccccc
Q 013669          348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLDNY  427 (438)
Q Consensus       348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~~~  427 (438)
                      ++.++|.+            +++++++++++.+|++.|.+++++++||||++| +++|+||..||++.+..+....+..+
T Consensus       117 ~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g-~lvGiIT~~Dil~~i~~e~~ed~~~~  183 (205)
T 3kxr_A          117 PLISLLSE------------DSRALTANTTLLDAAEAIEHSREIELPVIDDAG-ELIGRVTLRAATALVREHYEAQLMAT  183 (205)
T ss_dssp             BGGGGCCS------------SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTS-BEEEEEEHHHHHHHHHHHHC------
T ss_pred             hHHHHhcC------------CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCC-eEEEEEEHHHHHHHHHHHHHHHHHHh
Confidence            89999975            889999999999999999999999999999988 99999999999999986555544443

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.69  E-value=2.1e-16  Score=133.02  Aligned_cols=125  Identities=13%  Similarity=0.143  Sum_probs=107.2

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      .+++++|...  .+++++++++++.+|+++|.+++++++||++++.++++|++|..|+++.+.....      +...++.
T Consensus         2 ~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~------~~~~~v~   73 (130)
T 3hf7_A            2 VSVNDIMVPR--NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE------FTKEIML   73 (130)
T ss_dssp             CBHHHHSEEG--GGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC------CCHHHHH
T ss_pred             cCHHHhCccH--HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc------cchhhHH
Confidence            4689999632  4689999999999999999999999999997644799999999999998865421      1235677


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +    +| . ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+.
T Consensus        74 ~----~m-~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           74 R----AA-D-EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             H----HS-B-CCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             H----hc-c-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHh
Confidence            8    67 3 6889999999999999999999999999997 799999999999998865

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.69  E-value=3.1e-16  Score=136.63  Aligned_cols=128  Identities=20%  Similarity=0.313  Sum_probs=109.4

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      ...++++    +|++  ++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|++..+.....   ....++.
T Consensus        15 ~~~~v~~----im~~--~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~~~~~v~   84 (159)
T 3fv6_A           15 KKLQVKD----FQSI--PVVIHENVSVYDAICTMFLEDVGTLFVVDR-DAVLVGVLSRKDLLRASIGQQE---LTSVPVH   84 (159)
T ss_dssp             TTCBGGG----SCBC--CCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHTSCSC---TTTCBGG
T ss_pred             hhCCHHH----HcCC--CEEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHhhccCc---ccCcCHH
Confidence            4568889    7875  459999999999999999999999999997 7999999999999987643222   2456899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCC--eEEEEEeHHHHHHHhhc
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA--EVVGVITLRDVISCFIF  418 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~--~lvGvIT~~DIl~~l~~  418 (438)
                      ++|.+.          .+++++.+++++.+|+++|.+++++++||+|++|+  +++|+||.+||++++..
T Consensus        85 ~~m~~~----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           85 IIMTRM----------PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             GTSEET----------TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             HHHcCC----------CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence            999731          16789999999999999999999999999997532  89999999999999873

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.69  E-value=2.3e-16  Score=133.27  Aligned_cols=123  Identities=19%  Similarity=0.381  Sum_probs=106.2

Q ss_pred             CccccccCCCC---CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          274 PISDLGLPFMS---SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       274 ~v~~l~l~~m~---~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      ++++    +|+   + +++++.+++++.++++.|.+++++++||+|  +|+++|+||.+|++..+.....  .....++.
T Consensus         7 ~v~~----im~~~~~-~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~--~~~~~~v~   77 (135)
T 2rc3_A            7 TVKH----LLQEKGH-TVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLDK--PVKDTQVK   77 (135)
T ss_dssp             BHHH----HHHHHCC-CCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGSSS--CGGGSBGG
T ss_pred             eHHH----HHhcCCC-CcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHHHHHHcCC--CcccCCHH
Confidence            5677    676   5 789999999999999999999999999998  6899999999999864332111  12466899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      ++|..            ++.++++++++.+|++.|.+++++++||+| +| +++|+||.+||++++..+
T Consensus        78 ~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           78 EIMTR------------QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DG-KVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             GTSBC------------SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHC-
T ss_pred             HhccC------------CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CC-EEEEEEEHHHHHHHHHhc
Confidence            99985            889999999999999999999999999999 66 999999999999998764

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.69  E-value=4.1e-16  Score=135.49  Aligned_cols=128  Identities=14%  Similarity=0.284  Sum_probs=109.5

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCce-EeEEeCCCCeEEEEEeHHHHHHHhcC--------Ccc-
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGG-IPVVEGQQKKIVGNVSIRDIRHLLLK--------PEL-  340 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~-lpVvd~~~~~lvGiIs~~Dl~~~l~~--------~~~-  340 (438)
                      ...++++    +|++ +++++.+++++.+|++.|.++++++ +||+|+ + +++|+||.+|++..+..        ... 
T Consensus        14 ~~~~v~~----im~~-~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           14 KVKDVCK----LISL-KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-N-KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             BHHHHTT----SSCC-CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-T-EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             ccccHhh----cccC-CCceECCCCCHHHHHHHHHhCCCCccEEEEEC-C-EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            4567888    7887 8999999999999999999999999 999996 5 99999999999887531        000 


Q ss_pred             ---ccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          341 ---FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       341 ---~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                         .......++.++|.            . ++++++++++.+|+++|.+++++++||+|++| +++|+||.+||++.+.
T Consensus        87 ~~~~~~~~~~~v~~im~------------~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~vGiit~~dll~~l~  152 (157)
T 1o50_A           87 RSSMKRLIAKNASEIML------------D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG-EIVGDLNSLEILLALW  152 (157)
T ss_dssp             --CCCCCSSCBHHHHCB------------C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHcC------------C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCC-EEEEEEEHHHHHHHHH
Confidence               01234678999997            3 88999999999999999999999999999887 9999999999999987


Q ss_pred             cC
Q 013669          418 FE  419 (438)
Q Consensus       418 ~e  419 (438)
                      .+
T Consensus       153 ~~  154 (157)
T 1o50_A          153 KG  154 (157)
T ss_dssp             HS
T ss_pred             Hh
Confidence            53

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.69  E-value=3.8e-16  Score=138.02  Aligned_cols=128  Identities=11%  Similarity=0.133  Sum_probs=109.0

Q ss_pred             CCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccc
Q 013669          192 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIA  271 (438)
Q Consensus       192 ~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~  271 (438)
                      ..+...+|+++|...  .+++++++++++.+|+++|.+++++++||+|++.++++|+||..|+++.+...         .
T Consensus        37 ~~l~~~~v~diM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~  105 (172)
T 3lhh_A           37 FRLDERTISSLMVPR--SDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAG---------E  105 (172)
T ss_dssp             ------CTTTTSEEG--GGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTT---------C
T ss_pred             hccCCCCHHHhCccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhc---------C
Confidence            346667899999833  56899999999999999999999999999987546999999999999987653         2


Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      ..++++    +| + +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+..
T Consensus       106 ~~~v~~----im-~-~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          106 RLELVD----LV-K-NCNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             CCCGGG----GC-B-CCEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHT
T ss_pred             cccHHH----Hh-c-CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHhC
Confidence            467888    78 5 7999999999999999999999999999997 7999999999999998763

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.68  E-value=5.7e-16  Score=135.10  Aligned_cols=135  Identities=16%  Similarity=0.233  Sum_probs=108.5

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeC-CCCeEEEEEeHHHHHHHhcCCcc-ccccccCc
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRHLLLKPEL-FSNFRQLT  348 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~lvGiIs~~Dl~~~l~~~~~-~~~~~~~~  348 (438)
                      ...++++    +|.+ +++++.+++++.+|++.|.+++++++||+|+ ++|+++|+||.+|++..+..... .......+
T Consensus        11 ~~~~v~d----im~~-~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~   85 (164)
T 2pfi_A           11 HHVRVEH----FMNH-SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQC   85 (164)
T ss_dssp             CSCBHHH----HCBC-CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCB
T ss_pred             cCCCHHH----HcCC-CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccch
Confidence            3567888    7887 8999999999999999999999999999984 25899999999999988753211 01112457


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      +.++|.....      ....++++.+++++.+|+++|.+++++++||+| +| +++|+||.+||++.+..
T Consensus        86 v~~~m~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           86 LQDILARGCP------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RG-RAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             HHHHHHTTCC------CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TT-EEEEEEEHHHHHHHHHH
T ss_pred             hhhhhccccc------ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CC-EEEEEEEHHHHHHHHHh
Confidence            9999984100      000178999999999999999999999999999 66 99999999999998873

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.68  E-value=5.4e-16  Score=130.54  Aligned_cols=122  Identities=24%  Similarity=0.413  Sum_probs=109.0

Q ss_pred             CCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCc
Q 013669          196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  275 (438)
Q Consensus       196 ~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v  275 (438)
                      ..+++++|.    .+++++.+++++.+|+++|.+++++++||+| + ++++|++|..|+++++.....       ...++
T Consensus         3 ~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~-------~~~~v   69 (133)
T 2ef7_A            3 EEIVKEYMK----TQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKS-------LETKA   69 (133)
T ss_dssp             CCBGGGTSB----CSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCC-------TTCBG
T ss_pred             cccHHHhcc----CCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCC-------cccCH
Confidence            456899998    6799999999999999999999999999999 5 899999999999988765421       34678


Q ss_pred             cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ++    +|.+ ++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||..|++..+.
T Consensus        70 ~~----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           70 EE----FMTA-SLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAID  124 (133)
T ss_dssp             GG----TSEE-CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             HH----HcCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence            88    7876 8899999999999999999999999999997 799999999999998865

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.68  E-value=1.4e-16  Score=133.83  Aligned_cols=126  Identities=12%  Similarity=0.183  Sum_probs=107.1

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      +...+++++|...  .+++++++++++.+|+++|.+++++++||+|++.++++|++|..|+++.+....        ...
T Consensus         3 l~~~~v~~iM~~~--~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~--------~~~   72 (130)
T 3i8n_A            3 AQDVPVTQVMTPR--PVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS--------GQK   72 (130)
T ss_dssp             ----CCTTTSCCB--CCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT--------TTS
T ss_pred             cCcCCHhhCCCcH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC--------CcC
Confidence            3456789999833  567799999999999999999999999999975479999999999999876541        346


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ++++    +|.  ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+.
T Consensus        73 ~v~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           73 QLGA----VMR--PIQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             BHHH----HSE--ECCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             CHHH----Hhc--CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHc
Confidence            7888    674  5889999999999999999999999999997 799999999999998764

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.68  E-value=3.9e-16  Score=131.05  Aligned_cols=122  Identities=11%  Similarity=0.168  Sum_probs=105.8

Q ss_pred             CCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCc
Q 013669          196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  275 (438)
Q Consensus       196 ~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v  275 (438)
                      ..+++++|...  .+++++++++++.+|+++|.+++++++||+|++.++++|++|..|+++.+..          ...++
T Consensus         4 ~~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~----------~~~~v   71 (129)
T 3jtf_A            4 ERTVADIMVPR--SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE----------PALDI   71 (129)
T ss_dssp             CCBHHHHCEEG--GGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC----------TTSCG
T ss_pred             CCCHHHhCccH--HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc----------CCcCH
Confidence            45699999833  4688999999999999999999999999999744799999999999886642          24578


Q ss_pred             cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ++    +|.  +++++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..|++..+.
T Consensus        72 ~~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           72 RS----LVR--PAVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             GG----GCB--CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHH
T ss_pred             HH----HhC--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            88    675  4789999999999999999999999999997 799999999999998764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.68  E-value=3.8e-16  Score=135.39  Aligned_cols=131  Identities=18%  Similarity=0.292  Sum_probs=110.3

Q ss_pred             cccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccc--ccccc
Q 013669          270 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF--SNFRQ  346 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~--~~~~~  346 (438)
                      +...++++    +|.+ ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|++..+.....+  .....
T Consensus         8 l~~~~v~~----im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~   82 (157)
T 2emq_A            8 FMQMTVKP----FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAILGLERIEFERLET   82 (157)
T ss_dssp             --CCBSTT----TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSBCSSSBCGGGGGT
T ss_pred             HhhCcHHh----hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHhcccccchHHhcC
Confidence            35567888    7763 36889999999999999999999999999997 79999999999999887542111  12345


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669          347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  420 (438)
Q Consensus       347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~  420 (438)
                      .++.++|..            +++++++++++.+|++.|.++++  +||+|++| +++|+||.+||++++....
T Consensus        83 ~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g-~~~Giit~~dil~~~~~~~  141 (157)
T 2emq_A           83 MKVEEVMNR------------NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDG-YFAGIFTRREVLKQLNKQL  141 (157)
T ss_dssp             CBGGGTCBC------------CCCEEETTSBHHHHHHHHHHSSE--EEEECSSS-SEEEEEEHHHHHHHHHHTT
T ss_pred             CcHHHHhCC------------CCceecCCCcHHHHHHHHhhCCE--EEEEcCCC-eEEEEEEHHHHHHHHHHHh
Confidence            689999985            88999999999999999999987  99999887 9999999999999988643

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.68  E-value=5.3e-16  Score=133.55  Aligned_cols=121  Identities=17%  Similarity=0.364  Sum_probs=106.5

Q ss_pred             cCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          272 SQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       272 ~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      ..++++    +|.+ ++++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|++..+....   .+...++.
T Consensus        27 ~~~v~d----im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~---~~~~~~v~   98 (149)
T 3k2v_A           27 LLRVND----IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD-DMNIIGIFTDGDLRRVFDTGV---DMRDASIA   98 (149)
T ss_dssp             TSBGGG----TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT-TCBEEEEEEHHHHHHHHCSSS---CCTTCBHH
T ss_pred             ccCHHH----HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC-CCcEEEEecHHHHHHHHhcCC---CcccCcHH
Confidence            357888    7763 25889999999999999999999999999997 799999999999999876432   23467899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                      ++|..            +++++++++++.+|++.|.+++++++||+|+ + +++|+||.+||++
T Consensus        99 ~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~~~Giit~~dil~  148 (149)
T 3k2v_A           99 DVMTR------------GGIRIRPGTLAVDALNLMQSRHITCVLVADG-D-HLLGVVHMHDLLR  148 (149)
T ss_dssp             HHSEE------------SCCEECTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHTC
T ss_pred             HHcCC------------CCeEECCCCCHHHHHHHHHHcCCCEEEEecC-C-EEEEEEEHHHhhc
Confidence            99985            7899999999999999999999999999996 3 9999999999975

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.68  E-value=4.3e-16  Score=135.19  Aligned_cols=128  Identities=18%  Similarity=0.350  Sum_probs=109.1

Q ss_pred             CCccccccCCCCC-----CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013669          273 QPISDLGLPFMSS-----DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQL  347 (438)
Q Consensus       273 ~~v~~l~l~~m~~-----~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~  347 (438)
                      .++++    +|.+     ++++++.+++++.+|++.|.+++++++||++  +|+++|+||.+|++..+.....  .....
T Consensus         7 ~~v~d----im~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~--~~~~~   78 (157)
T 4fry_A            7 TTVAQ----ILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQER--SSKAT   78 (157)
T ss_dssp             CBHHH----HHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTC--CSSSC
T ss_pred             HHHHH----HHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccC--Ccccc
Confidence            35666    5652     2579999999999999999999999999965  7999999999999988654221  12467


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCC
Q 013669          348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN  422 (438)
Q Consensus       348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~  422 (438)
                      ++.++|.+            +++++.+++++.+++++|.+++++++||+| +| +++|+||.+||++++..+...
T Consensus        79 ~v~~~m~~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g-~~~Giit~~dil~~l~~~~~~  139 (157)
T 4fry_A           79 RVEEIMTA------------KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GG-KLIGLISIGDLVKSVIADQQF  139 (157)
T ss_dssp             BHHHHSBS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHTTCCC
T ss_pred             CHHHHcCC------------CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CC-EEEEEEEHHHHHHHHHHHHHh
Confidence            89999985            889999999999999999999999999999 66 999999999999999875543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.68  E-value=2.4e-16  Score=131.97  Aligned_cols=123  Identities=12%  Similarity=0.238  Sum_probs=105.9

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      .+++++|...  .+++++.+++++.+|+++|.+++++++||+|++.++++|++|..|+++.+....        ...+++
T Consensus         3 ~~v~diM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~--------~~~~v~   72 (127)
T 3nqr_A            3 QRVRDIMIPR--SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA--------EAFSMD   72 (127)
T ss_dssp             CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC--------CCCCHH
T ss_pred             cCHHHhcccH--HHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC--------CCCCHH
Confidence            4689999832  348999999999999999999999999999975469999999999988765331        356788


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +    +|.  ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+.
T Consensus        73 ~----~m~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           73 K----VLR--TAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             H----HCB--CCCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC-
T ss_pred             H----HcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            8    675  4789999999999999999999999999997 899999999999998754

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.67  E-value=1.9e-16  Score=137.06  Aligned_cols=126  Identities=14%  Similarity=0.251  Sum_probs=110.0

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEE-cCCCCCEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPII-EPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  272 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVv-d~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~  272 (438)
                      +...+|+++|...  .+++++++++++.+|+++|.+++++++||+ |++.++++|+||..|+++.+...         ..
T Consensus        17 l~~~~v~~iM~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~---------~~   85 (153)
T 3oco_A           17 MNDKVASDVMVDR--TSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARID---------DK   85 (153)
T ss_dssp             HHHCBHHHHSEEG--GGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHH---------TT
T ss_pred             cCCCEeeeEecch--hheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcC---------CC
Confidence            3456799999831  368999999999999999999999999999 64337999999999999887653         24


Q ss_pred             CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      .++++    +| + ++.++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++..+..
T Consensus        86 ~~v~~----~m-~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           86 AKIST----IM-R-DIVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             SBGGG----TC-B-CCEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHHC
T ss_pred             CcHHH----Hh-C-CCeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHhc
Confidence            67888    78 5 7999999999999999999999999999997 7999999999999988763

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.67  E-value=1.1e-16  Score=141.88  Aligned_cols=127  Identities=21%  Similarity=0.375  Sum_probs=105.9

Q ss_pred             CccccccCCCCCC-CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc-------------
Q 013669          274 PISDLGLPFMSSD-EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE-------------  339 (438)
Q Consensus       274 ~v~~l~l~~m~~~-~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~-------------  339 (438)
                      ++++    +|.+. +++++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|++.+.....             
T Consensus         5 ~v~d----im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~   79 (180)
T 3sl7_A            5 TVGD----FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVD   79 (180)
T ss_dssp             BHHH----HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHTCC------------------
T ss_pred             eHHH----hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC-CCeEEEEEEHHHHHhhhhhccccCCccccccccc
Confidence            5666    56542 5889999999999999999999999999997 799999999999974321000             


Q ss_pred             -----------cccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEe
Q 013669          340 -----------LFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT  408 (438)
Q Consensus       340 -----------~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT  408 (438)
                                 ........++.++|.+            +++++++++++.+|+++|.+++++++||+|++| +++|+||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~vGiit  146 (180)
T 3sl7_A           80 STWKTFNELQKLISKTYGKVVGDLMTP------------SPLVVRDSTNLEDAARLLLETKFRRLPVVDADG-KLIGILT  146 (180)
T ss_dssp             -CCCSHHHHHHHHHTTTTCBHHHHSEE------------SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTC-BEEEEEE
T ss_pred             chhhhhHHHHHHHhccccccHHHHhCC------------CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCC-eEEEEEE
Confidence                       0012235689999985            789999999999999999999999999999887 9999999


Q ss_pred             HHHHHHHhhc
Q 013669          409 LRDVISCFIF  418 (438)
Q Consensus       409 ~~DIl~~l~~  418 (438)
                      .+||++++..
T Consensus       147 ~~dil~~~~~  156 (180)
T 3sl7_A          147 RGNVVRAALQ  156 (180)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.67  E-value=3.2e-16  Score=132.92  Aligned_cols=124  Identities=11%  Similarity=0.179  Sum_probs=107.0

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      .+|+++|...  .+++++.+++++.+|+++|.+++++++||+|++.++++|+||..|+++.+....       ....+++
T Consensus         3 ~~v~~iM~~~--~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~-------~~~~~v~   73 (136)
T 3lfr_A            3 LQVRDIMVPR--SQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD-------GDSDDVK   73 (136)
T ss_dssp             CBHHHHSEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS-------GGGCCGG
T ss_pred             CChHhccccH--HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc-------CCCcCHH
Confidence            4689999833  468999999999999999999999999999975369999999999998775321       1456788


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +    +|+  +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|++..+.
T Consensus        74 ~----~m~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           74 K----LLR--PATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             G----TCB--CCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC-
T ss_pred             H----HcC--CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            8    785  4899999999999999999999999999997 799999999999988754

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.67  E-value=5.4e-16  Score=138.52  Aligned_cols=126  Identities=24%  Similarity=0.313  Sum_probs=110.6

Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  351 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~  351 (438)
                      ..++++    +|.+ +++++.+++++.+|+++|.+++++++||+++ +|+++|++|.+|++..+....  ......++.+
T Consensus         8 ~~~v~~----im~~-~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~-~g~~vGivt~~dl~~~~~~~~--~~~~~~~v~~   79 (184)
T 1pvm_A            8 FMRVEK----IMNS-NFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRN--KKPDEVPIRL   79 (184)
T ss_dssp             CCBGGG----TSBT-TCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGC--CCGGGSBGGG
T ss_pred             ccCHHH----hcCC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhcc--cCcccCCHHH
Confidence            357888    7886 8999999999999999999999999999987 799999999999998765311  1123568999


Q ss_pred             HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          352 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       352 ~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      +|.+            +++++.+++++.+|+++|.+++++++||+|++| +++|+||..||++++..
T Consensus        80 im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           80 VMRK------------PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPG-RVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             TSBS------------SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTC-CEEEEEEHHHHTTTSCH
T ss_pred             HhCC------------CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHHHHHh
Confidence            9985            789999999999999999999999999999887 99999999999987764

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.67  E-value=3.4e-16  Score=131.10  Aligned_cols=122  Identities=13%  Similarity=0.200  Sum_probs=108.2

Q ss_pred             CCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCc
Q 013669          196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  275 (438)
Q Consensus       196 ~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v  275 (438)
                      +.+++++|.    .++.++.+++++.+|++.|.+++++++||+|+  ++++|++|..|+.+.+.....       ...++
T Consensus         4 s~~v~~~m~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~-------~~~~v   70 (128)
T 3gby_A            4 SVTFSYLAE----TDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPT-------VKEKL   70 (128)
T ss_dssp             TCBGGGGCB----CCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCC-------TTCBC
T ss_pred             ceEHHHhhc----CCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCc-------ccCcH
Confidence            356999999    77999999999999999999999999999997  799999999999987654311       22568


Q ss_pred             cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ++    +|.+ ++.++.+++++.++++.|.++++.++||+|+ +|+++|+||..|++..+.
T Consensus        71 ~~----~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           71 GE----ELLE-TVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CG----GGCB-CCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             HH----HccC-CCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence            88    7886 8899999999999999999999999999997 899999999999998875

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.66  E-value=6.5e-16  Score=132.92  Aligned_cols=130  Identities=18%  Similarity=0.299  Sum_probs=110.6

Q ss_pred             CCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC
Q 013669          195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  274 (438)
Q Consensus       195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~  274 (438)
                      ...+++++|...  .+++++.+++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+...... ........+
T Consensus        13 ~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~-~~~~~~~~~   88 (150)
T 3lqn_A           13 QQIFVKDLMISS--EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERI-EFERLEEMK   88 (150)
T ss_dssp             HHCBHHHHSEEG--GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSB-CGGGGGGCB
T ss_pred             hcCChhhcccCC--CceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhccc-chhHHhcCC
Confidence            345699999832  458999999999999999999999999999977 8999999999999988643211 122335678


Q ss_pred             ccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          275 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       275 v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +.+    +|.+ ++.++.+++++.++++.|.++++  +||+|+ +|+++|+||.+|++..+.
T Consensus        89 v~~----~m~~-~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~  142 (150)
T 3lqn_A           89 VEQ----VMKQ-DIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLN  142 (150)
T ss_dssp             GGG----TCBS-SCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             HHH----HhcC-CCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHH
Confidence            888    7886 88999999999999999999987  999997 899999999999999875

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.66  E-value=1.5e-15  Score=128.57  Aligned_cols=125  Identities=18%  Similarity=0.313  Sum_probs=109.1

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHH-hhcCCCCCccccccc
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG-LEGCKGRDWFDIIAS  272 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~-l~~~~~~~~~~~l~~  272 (438)
                      +...+++++|.    .+++++.+++++.+|++.|.+++++++||+|++ |+++|+||..|+++. +....       ...
T Consensus         4 l~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-------~~~   71 (138)
T 2yzi_A            4 DMKAPIKVYMT----KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGL-------PYD   71 (138)
T ss_dssp             CTTSBGGGTCB----CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCC-------CTT
T ss_pred             hhhhhHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCC-------ccc
Confidence            45567999998    789999999999999999999999999999976 899999999999853 33221       145


Q ss_pred             CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      .++.+    +|.+ ++.++.+++++.++++.|.+++++++ |+|+ +|+++|+||..|++..+..
T Consensus        72 ~~v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~-~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           72 IPVER----IMTR-NLITANVNTPLGEVLRKMAEHRIKHI-LIEE-EGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             SBGGG----TCBC-SCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             CCHHH----HhhC-CCeEECCCCcHHHHHHHHHhcCCCEE-EECC-CCCEEEEEEHHHHHHHHHH
Confidence            67888    7886 89999999999999999999999999 9997 7999999999999988763

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.66  E-value=1.5e-15  Score=129.34  Aligned_cols=121  Identities=17%  Similarity=0.244  Sum_probs=107.3

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCC--CEEEEEeHHHHHHHhhcCCCCCcccccccCC
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTP--DIKNYITQSAVVQGLEGCKGRDWFDIIASQP  274 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~--~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~  274 (438)
                      .+++++|.    .+++++.+++++.+|+++|.+++++++||+|++ +  +++|++|..|+++++.....       ...+
T Consensus         5 ~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~-------~~~~   72 (141)
T 2rih_A            5 IRTSELLK----RPPVSLPETATIREVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLD-------LDGP   72 (141)
T ss_dssp             CBGGGGCC----SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCC-------TTSB
T ss_pred             eEHHHHhc----CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCC-------CCCC
Confidence            45899998    779999999999999999999999999999986 7  89999999999998765421       3567


Q ss_pred             ccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          275 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       275 v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +.+    +|.+ ++.++.++ ++.++++.|.+++++++||+|+ +|+++|+||.+|++..+.
T Consensus        73 v~~----~m~~-~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           73 AMP----IANS-PITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             SGG----GCBC-CCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCHH
T ss_pred             HHH----HcCC-CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHHH
Confidence            888    7876 89999999 9999999999999999999997 799999999999976543

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.66  E-value=3.2e-16  Score=139.61  Aligned_cols=129  Identities=19%  Similarity=0.288  Sum_probs=108.3

Q ss_pred             ccCCccccccCCCCCCC---ceEE--cCCCcHHHHHHHHHHcCCceEeEE--eCCCCeEEEEEeHHHHHHHhcCCcc---
Q 013669          271 ASQPISDLGLPFMSSDE---VITI--QSNELILEAFKRMKDNNIGGIPVV--EGQQKKIVGNVSIRDIRHLLLKPEL---  340 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~---vv~v--~~~~~l~~a~~~m~~~~~~~lpVv--d~~~~~lvGiIs~~Dl~~~l~~~~~---  340 (438)
                      ...++++    +|.+..   ++++  .+++++.+|++.|.+++++++||+  |+ +|+++|+||.+|++..+.....   
T Consensus         9 ~~~~v~d----im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-~~~lvGiit~~dl~~~~~~~~~~~~   83 (185)
T 2j9l_A            9 HKTLAMD----VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-SQRLVGFVLRRDLIISIENARKKQD   83 (185)
T ss_dssp             CCCBHHH----HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-TCBEEEEEEHHHHHHHHHHHHTSCS
T ss_pred             ccCcHHH----HhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-CCeEEEEEEHHHHHHHHHhhcccCC
Confidence            4567888    787621   7788  999999999999999999999999  55 7999999999999987643110   


Q ss_pred             ------------------ccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCe
Q 013669          341 ------------------FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE  402 (438)
Q Consensus       341 ------------------~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~  402 (438)
                                        .......++.++|..            +++++.+++++.+|+++|.+++++++||+| +| +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g-~  149 (185)
T 2j9l_A           84 GVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDL------------SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NG-R  149 (185)
T ss_dssp             CCCTTCEEECSSSCCCCCTTCCCCEECGGGEES------------SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TT-E
T ss_pred             CccccceeecccCCcccccccccCccHHHhhCc------------CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CC-E
Confidence                              001235678899874            889999999999999999999999999999 66 9


Q ss_pred             EEEEEeHHHHHHHhhc
Q 013669          403 VVGVITLRDVISCFIF  418 (438)
Q Consensus       403 lvGvIT~~DIl~~l~~  418 (438)
                      ++|+||.+||++++..
T Consensus       150 ~vGiit~~dll~~l~~  165 (185)
T 2j9l_A          150 LLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             EEEEEEHHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHHH
Confidence            9999999999999874

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.66  E-value=5.2e-16  Score=135.04  Aligned_cols=130  Identities=18%  Similarity=0.251  Sum_probs=110.4

Q ss_pred             cccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc--cccccc
Q 013669          270 IASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL--FSNFRQ  346 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~--~~~~~~  346 (438)
                      +...++++    +|.+ ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|++..+.....  +.....
T Consensus        11 l~~~~v~~----im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~~~~~   85 (159)
T 1yav_A           11 LLEATVGQ----FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLERIEFEKLDQ   85 (159)
T ss_dssp             CTTCBHHH----HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSSSBCGGGTTT
T ss_pred             HhHhhHHH----HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC-CCCEEEEeEHHHHHHHhhhhcccchhhhcc
Confidence            34567888    6753 25889999999999999999999999999997 7899999999999998765321  112346


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      .++.++|.+            +++++.+++++.+|++.|.++++  +||+|++| +++|+||.+||++.+..+
T Consensus        86 ~~v~~~m~~------------~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g-~~vGiit~~dil~~~~~~  143 (159)
T 1yav_A           86 ITVEEVMLT------------DIPRLHINDPIMKGFGMVINNGF--VCVENDEQ-VFEGIFTRRVVLKELNKH  143 (159)
T ss_dssp             SBHHHHSBC------------SCCEEETTSBHHHHHHHTTTCSE--EEEECTTC-BEEEEEEHHHHHHHHHHH
T ss_pred             CCHHHhcCC------------CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCC-eEEEEEEHHHHHHHHHHH
Confidence            789999985            88999999999999999999976  99999887 999999999999998753

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.65  E-value=9.7e-16  Score=129.74  Aligned_cols=125  Identities=24%  Similarity=0.431  Sum_probs=109.2

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHH-HHHhhcCCCCCccccccc
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAV-VQGLEGCKGRDWFDIIAS  272 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di-~~~l~~~~~~~~~~~l~~  272 (438)
                      +...+++++|.    .+++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|+ .+++....       ...
T Consensus         5 l~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-------~~~   72 (138)
T 2p9m_A            5 LKNIKVKDVMT----KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKY-------TLE   72 (138)
T ss_dssp             CTTCBGGGTSB----CSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCC-------CSS
T ss_pred             cccCCHHHhhc----CCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcc-------cCC
Confidence            44567999998    679999999999999999999999999999976 899999999999 88775431       145


Q ss_pred             CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcC-----CceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .++.+    +|.+ ++.++.+++++.++++.|.+++     ++++||+|+ +|+++|+||.+|++..+.
T Consensus        73 ~~v~~----~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           73 TTIGD----VMTK-DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             CBHHH----HSCS-SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             cCHHH----HhCC-CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence            67888    7876 8899999999999999999999     999999997 799999999999998764

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.65  E-value=1.2e-15  Score=133.68  Aligned_cols=133  Identities=18%  Similarity=0.190  Sum_probs=114.2

Q ss_pred             cCCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccc
Q 013669          191 EEPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII  270 (438)
Q Consensus       191 ~~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l  270 (438)
                      ...+...+|+++|... ..+++++.+++++.+|+++|.+++++++||+|++ |+++|+||..|+++.+.....     ..
T Consensus        18 ~~~l~~~~v~dim~~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-----~~   90 (165)
T 3fhm_A           18 YFQGMATFVKDLLDRK-GRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGA-----AS   90 (165)
T ss_dssp             CCSSSSCBHHHHHHHH-CSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGG-----GG
T ss_pred             hHhhhhcCHHHHhccC-CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCC-----cc
Confidence            3456668899999831 1368999999999999999999999999999977 899999999999988765310     12


Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      ...++.+    +|.+ +++++.+++++.++++.|.+++++++||+|+  |+++|+||..||+..+..
T Consensus        91 ~~~~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           91 LQQSVSV----AMTK-NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             GTSBGGG----TSBS-SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTTC
T ss_pred             ccCCHHH----HhcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            4568888    7886 8899999999999999999999999999994  899999999999998764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.65  E-value=1.8e-15  Score=125.65  Aligned_cols=121  Identities=18%  Similarity=0.215  Sum_probs=106.9

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +++++|.    .+++++.+++++.+|++.|.+++++++||+| + |+++|++|..|+++++.....      ....++.+
T Consensus         2 ~v~~~m~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~------~~~~~v~~   69 (125)
T 1pbj_A            2 RVEDVMV----TDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDD------LAEVKVWE   69 (125)
T ss_dssp             CHHHHCB----CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCC------TTTSBHHH
T ss_pred             CHHHhcC----CCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCc------ccccCHHH
Confidence            4788998    6799999999999999999999999999999 5 899999999999988765421      13567888


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                          +|.+ ++.++.+++++.++++.|.+++++++||+|+  |+++|+||.+|++..+..
T Consensus        70 ----~m~~-~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           70 ----VMER-DLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             ----HCBC-GGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC-
T ss_pred             ----HcCC-CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHHh
Confidence                7876 8999999999999999999999999999994  899999999999988753

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.64  E-value=6e-16  Score=133.00  Aligned_cols=132  Identities=16%  Similarity=0.254  Sum_probs=107.2

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCC-------cccc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD-------WFDI  269 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~-------~~~~  269 (438)
                      .+++++|...  .+++++.+++++.+|+++|.+++++++||+|++ ++++|+||..|+++++.......       .+..
T Consensus         5 ~~v~~im~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~   81 (152)
T 4gqw_A            5 YTVGEFMTKK--EDLHVVKPTTTVDEALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSK   81 (152)
T ss_dssp             SBGGGTSEES--TTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC---
T ss_pred             EEhhhccCCC--CCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHHH
Confidence            5689999831  379999999999999999999999999999987 89999999999986543221100       0111


Q ss_pred             cccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      ....++.+    +|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+||+..+..
T Consensus        82 ~~~~~v~~----~m~~-~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           82 TNGKLVGD----LMTP-APLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             --CCBHHH----HSEE-SCCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             hccccHHH----hcCC-CceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHh
Confidence            23567888    7876 7889999999999999999999999999997 7999999999999998764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.64  E-value=1e-15  Score=140.23  Aligned_cols=121  Identities=16%  Similarity=0.242  Sum_probs=106.9

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      ...++.+    +|.+ +++++.+++++.+++++|.+++++++||+|+ +++++|+||.+|++..+.         ..++.
T Consensus        11 ~~~~~~~----~~~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~l~Givt~~dl~~~~~---------~~~v~   75 (213)
T 1vr9_A           11 HHMKVKK----WVTQ-DFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLDL---------DSSVF   75 (213)
T ss_dssp             --CBGGG----GCBS-CSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSCT---------TSBSG
T ss_pred             cccCHHH----hhcC-CCeEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCEEEEEEEHHHHHhhcC---------CCcHH
Confidence            3456666    6876 8999999999999999999999999999997 799999999999876532         45799


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      ++|.+            +++++.+++++.+|+++|.+++++++||+|++| +++|+||.+||++.+...
T Consensus        76 ~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGiit~~Dil~~~~~~  131 (213)
T 1vr9_A           76 NKVSL------------PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEM-RLKGAVSLHDFLEALIEA  131 (213)
T ss_dssp             GGCBC------------TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTC-BEEEEEEHHHHHHHHHHS
T ss_pred             HHccC------------CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCC-EEEEEEEHHHHHHHHHHH
Confidence            99985            889999999999999999999999999999887 999999999999988753

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.63  E-value=2e-15  Score=129.86  Aligned_cols=121  Identities=19%  Similarity=0.304  Sum_probs=105.9

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      .+++++|...  .+++++.+++++.+|+++|.+++++++||+|++ |+++|+||..|+++.+.....      +...++.
T Consensus        28 ~~v~dim~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~------~~~~~v~   98 (149)
T 3k2v_A           28 LRVNDIMHTG--DEIPHVGLQATLRDALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVD------MRDASIA   98 (149)
T ss_dssp             SBGGGTSBCG--GGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSC------CTTCBHH
T ss_pred             cCHHHHhcCC--CCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCC------cccCcHH
Confidence            4699999821  279999999999999999999999999999977 899999999999998865421      2456888


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                      +    +|.+ +++++.+++++.++++.|.+++++.+||+|+  ++++|+||..||+.
T Consensus        99 ~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~  148 (149)
T 3k2v_A           99 D----VMTR-GGIRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDLLR  148 (149)
T ss_dssp             H----HSEE-SCCEECTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTC
T ss_pred             H----HcCC-CCeEECCCCCHHHHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhc
Confidence            8    7876 7899999999999999999999999999995  49999999999863

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.63  E-value=2.1e-15  Score=131.47  Aligned_cols=128  Identities=17%  Similarity=0.311  Sum_probs=107.7

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCC--cccccccCC
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD--WFDIIASQP  274 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~--~~~~l~~~~  274 (438)
                      .+|+++|.    .+++++.+++++.+|+++|.+++++++||+|++ |+++|+||..|+++++.......  ........+
T Consensus         5 ~~v~dim~----~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T 2o16_A            5 IKVEDMMT----RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETP   79 (160)
T ss_dssp             CBGGGTSE----ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCB
T ss_pred             CcHHHHhc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhcccC
Confidence            56899998    679999999999999999999999999999976 89999999999998875321000  001124567


Q ss_pred             ccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          275 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       275 v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +.+    +|.+ +++++.+++++.++++.|.+++++++||+|  +|+++|+||.+||+..+.
T Consensus        80 v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           80 LFE----VMHT-DVTSVAPQAGLKESAIYMQKHKIGCLPVVA--KDVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             HHH----HSCS-CEEEBCTTSBHHHHHHHHHHTTCSCEEEEE--TTEEEEEECHHHHHHHHH
T ss_pred             HHH----HhcC-CCeEECCCCCHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            888    7886 899999999999999999999999999999  489999999999998865

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.63  E-value=3.4e-15  Score=130.00  Aligned_cols=125  Identities=12%  Similarity=0.332  Sum_probs=107.6

Q ss_pred             CCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC
Q 013669          195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  274 (438)
Q Consensus       195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~  274 (438)
                      ...+|+++|.    .+ +++.+++++.+|+++|.+++++++||+|++ ++++|+||..|+++.+.....      ....+
T Consensus        15 ~~~~v~~im~----~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~------~~~~~   82 (159)
T 3fv6_A           15 KKLQVKDFQS----IP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQE------LTSVP   82 (159)
T ss_dssp             TTCBGGGSCB----CC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSC------TTTCB
T ss_pred             hhCCHHHHcC----CC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCc------ccCcC
Confidence            3456999998    54 599999999999999999999999999976 899999999999997754311      14567


Q ss_pred             ccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCC---eEEEEEeHHHHHHHhc
Q 013669          275 ISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQK---KIVGNVSIRDIRHLLL  336 (438)
Q Consensus       275 v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~---~lvGiIs~~Dl~~~l~  336 (438)
                      +.+    +|.+ .+++++.+++++.++++.|.+++++++||+|+ +|   +++|+||.+||+..+.
T Consensus        83 v~~----~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           83 VHI----IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             GGG----TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHH
T ss_pred             HHH----HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHH
Confidence            888    6763 25789999999999999999999999999997 66   9999999999998875

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.63  E-value=4e-15  Score=128.92  Aligned_cols=131  Identities=14%  Similarity=0.277  Sum_probs=109.2

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      +...+++++|...  .+++++.+++++.+|++.|.+++++++||+|++ |+++|+||..|+++.+...... ....+...
T Consensus         8 l~~~~v~~im~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~-~~~~~~~~   83 (157)
T 2emq_A            8 FMQMTVKPFLIPA--DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERI-EFERLETM   83 (157)
T ss_dssp             --CCBSTTTCEEG--GGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSB-CGGGGGTC
T ss_pred             HhhCcHHhhccCC--ccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhccccc-chHHhcCC
Confidence            4456799999821  278999999999999999999999999999976 8999999999999887643111 11223466


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ++.+    +|.+ +++++.+++++.++++.|.++++  +||+|+ +|+++|+||.+|++..+.
T Consensus        84 ~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~  138 (157)
T 2emq_A           84 KVEE----VMNR-NIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLN  138 (157)
T ss_dssp             BGGG----TCBC-CCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHH
T ss_pred             cHHH----HhCC-CCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHH
Confidence            8888    7887 89999999999999999999987  999997 799999999999998875

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.62  E-value=1.2e-15  Score=128.30  Aligned_cols=125  Identities=20%  Similarity=0.361  Sum_probs=106.5

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHH-HHhhcCCCCCccccccc
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVV-QGLEGCKGRDWFDIIAS  272 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~-~~l~~~~~~~~~~~l~~  272 (438)
                      +...+++++|.    .+++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|++ +++.....      ...
T Consensus         5 ~~~~~v~~im~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~------~~~   73 (133)
T 1y5h_A            5 FTMTTARDIMN----AGVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLD------PNT   73 (133)
T ss_dssp             ---CCHHHHSE----ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCC------TTT
T ss_pred             hhhcCHHHHhc----CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCC------ccc
Confidence            33457999998    679999999999999999999999999999876 8999999999998 45544311      134


Q ss_pred             CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .++.+    +|.+ ++.++.+++++.++++.|.+++.+++||+|  +|+++|+||.+|++..+.
T Consensus        74 ~~v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           74 ATAGE----LARD-SIYYVDANASIQEMLNVMEEHQVRRVPVIS--EHRLVGIVTEADIARHLP  130 (133)
T ss_dssp             SBHHH----HHTT-CCCCEETTCCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHTCC
T ss_pred             cCHHH----HhcC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            67888    7876 889999999999999999999999999999  489999999999988754

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.62  E-value=7.7e-15  Score=123.81  Aligned_cols=125  Identities=13%  Similarity=0.272  Sum_probs=106.3

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +++++|... ..+++++++++++.+|++.|.+++++++||+| + ++++|++|..|+++.+.... .    .....++.+
T Consensus         7 ~v~~im~~~-~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~-~----~~~~~~v~~   78 (135)
T 2rc3_A            7 TVKHLLQEK-GHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLD-K----PVKDTQVKE   78 (135)
T ss_dssp             BHHHHHHHH-CCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSS-S----CGGGSBGGG
T ss_pred             eHHHHHhcC-CCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcC-C----CcccCCHHH
Confidence            588998621 14589999999999999999999999999998 5 89999999999997544321 1    124568888


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                          +|.+ ++.++.+++++.++++.|.+++++++||+|  +|+++|+||.+|++..+.+
T Consensus        79 ----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           79 ----IMTR-QVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             ----TSBC-SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             ----hccC-CCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHHh
Confidence                7887 899999999999999999999999999999  5899999999999988754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.62  E-value=2.7e-15  Score=130.45  Aligned_cols=131  Identities=16%  Similarity=0.288  Sum_probs=110.4

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      +...+++++|...  .+++++.+++++.+|+++|.+++++++||+|++ ++++|+||..|+++.+...... ........
T Consensus        11 l~~~~v~~im~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~-~~~~~~~~   86 (159)
T 1yav_A           11 LLEATVGQFMIEA--DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERI-EFEKLDQI   86 (159)
T ss_dssp             CTTCBHHHHSEEG--GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSB-CGGGTTTS
T ss_pred             HhHhhHHHHhCCc--cceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhccc-chhhhccC
Confidence            4457799999821  269999999999999999999999999999976 8999999999999987653211 11223466


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ++.+    +|.+ ++.++.+++++.++++.|.++++  +||+|+ +|+++|+||.+|++..+.
T Consensus        87 ~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           87 TVEE----VMLT-DIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             BHHH----HSBC-SCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             CHHH----hcCC-CCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHH
Confidence            8888    7886 88999999999999999999887  999997 799999999999998865

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.61  E-value=5.3e-15  Score=132.00  Aligned_cols=124  Identities=14%  Similarity=0.259  Sum_probs=108.7

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      .+++++|.    .+++++.+++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+.....     .....++.
T Consensus         9 ~~v~~im~----~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~-----~~~~~~v~   78 (184)
T 1pvm_A            9 MRVEKIMN----SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNK-----KPDEVPIR   78 (184)
T ss_dssp             CBGGGTSB----TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCC-----CGGGSBGG
T ss_pred             cCHHHhcC----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhccc-----CcccCCHH
Confidence            46899998    789999999999999999999999999999976 899999999999987753210     11456788


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +    +|.+ +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..||+..+.
T Consensus        79 ~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           79 L----VMRK-PIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             G----TSBS-SCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSC
T ss_pred             H----HhCC-CCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence            8    7886 8899999999999999999999999999997 799999999999987654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.61  E-value=3.1e-15  Score=127.35  Aligned_cols=126  Identities=17%  Similarity=0.264  Sum_probs=104.4

Q ss_pred             CCchhh---hccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013669          196 STTVRS---IIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  272 (438)
Q Consensus       196 ~~~v~d---i~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~  272 (438)
                      ..++++   +|.    .+++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|+++++.....     ....
T Consensus         7 ~~~v~~~~~~~~----~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-----~~~~   76 (144)
T 2nyc_A            7 KIPIGDLNIITQ----DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIY-----NDLS   76 (144)
T ss_dssp             GSBGGGSSCCBC----SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC---------CC
T ss_pred             hcchhhcCCCCC----CCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhccccc-----ccCC
Confidence            345777   555    679999999999999999999999999999976 899999999999988764310     0134


Q ss_pred             CCccccccCCCCCC-----CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          273 QPISDLGLPFMSSD-----EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       273 ~~v~~l~l~~m~~~-----~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .++.+    +|.+.     ++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|++..+.
T Consensus        77 ~~v~~----~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           77 LSVGE----ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             SBHHH----HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ccHHH----HHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence            57777    56531     5889999999999999999999999999997 799999999999998864

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.61  E-value=1.3e-15  Score=132.22  Aligned_cols=121  Identities=11%  Similarity=0.173  Sum_probs=105.1

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      +...+|+++|...  .+++++++++++.+|+++|.+++++++||+|++.++++|+||..|+++.+...         ...
T Consensus        35 l~~~~v~diM~~~--~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~---------~~~  103 (156)
T 3oi8_A           35 FSDLEVRDAMITR--SRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP---------EQF  103 (156)
T ss_dssp             HTTCBGGGTCEEG--GGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG---------GGC
T ss_pred             cCCCCHhheeeeH--HHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC---------Ccc
Confidence            5567899999832  36899999999999999999999999999997634999999999998765432         346


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHH
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIR  332 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~  332 (438)
                      ++++    +|.  +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|++
T Consensus       104 ~v~~----im~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~g~~~Givt~~Dil  155 (156)
T 3oi8_A          104 HLKS----ILR--PAVFVPEGKSLTALLKEFREQRNHMAIVIDE-YGGTSGLVTFEDII  155 (156)
T ss_dssp             CHHH----HCB--CCCEEETTSBHHHHHHHHHHTTCCEEEEECT-TSSEEEEEEHHHHC
T ss_pred             cHHH----HcC--CCEEECCCCCHHHHHHHHHhcCCeEEEEECC-CCCEEEEEEHHHhc
Confidence            7888    675  4889999999999999999999999999997 79999999999985

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.61  E-value=5.9e-15  Score=128.58  Aligned_cols=130  Identities=16%  Similarity=0.229  Sum_probs=106.1

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcC-CCCCEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  272 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~-~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~  272 (438)
                      ....+++++|.    .+++++.+++++.+|+++|.+++++++||+|+ ++++++|+||..|+++.+..... .. .....
T Consensus        10 ~~~~~v~dim~----~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~-~~-~~~~~   83 (164)
T 2pfi_A           10 SHHVRVEHFMN----HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPP-SR-APGHQ   83 (164)
T ss_dssp             CCSCBHHHHCB----CCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC---------CCC
T ss_pred             ccCCCHHHHcC----CCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhcc-cc-CCccc
Confidence            34467999998    67999999999999999999999999999996 23899999999999988754311 00 01123


Q ss_pred             CCccccccCCCCCCC------ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          273 QPISDLGLPFMSSDE------VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~------vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .++.+    +|.. +      ++++.+++++.++++.|.+++++++||+|  +|+++|+||.+||+..+.
T Consensus        84 ~~v~~----~m~~-~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~  146 (164)
T 2pfi_A           84 QCLQD----ILAR-GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAIS  146 (164)
T ss_dssp             CBHHH----HHHT-TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             chhhh----hhcc-cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            45666    4544 3      78999999999999999999999999999  689999999999998865

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.61  E-value=5e-15  Score=131.03  Aligned_cols=125  Identities=15%  Similarity=0.104  Sum_probs=106.3

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccC
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ  273 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~  273 (438)
                      +...+|+++|...  .+++++++++++.+|+++|.+++++++||+|++.++++|+||.+|+++.+...         ...
T Consensus        33 l~~~~v~diM~~~--~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~---------~~~  101 (173)
T 3ocm_A           33 LAERSIRSIMTPR--TDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE---------GRV  101 (173)
T ss_dssp             HTTSCSTTTSEEG--GGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHH---------SSC
T ss_pred             cCCCCHHHhCCcH--HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcC---------Ccc
Confidence            5567799999732  56899999999999999999999999999987547999999999999887543         122


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      ++. +     .. +++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..||+..+..
T Consensus       102 ~v~-~-----~~-~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde-~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          102 RRN-R-----LR-DPIIVHESIGILRLMDTLKRSRGQLVLVADE-FGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             CGG-G-----SB-CCCEECGGGCHHHHHHHHHHSTTCCEEEECT-TCCEEEEECHHHHHHHHHC
T ss_pred             hhH-h-----cC-CCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-CCCEEEEEeHHHHHHHHhC
Confidence            333 2     23 6889999999999999999999999999997 7999999999999998763

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.60  E-value=2.3e-15  Score=133.26  Aligned_cols=131  Identities=15%  Similarity=0.250  Sum_probs=106.5

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC------------C
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG------------R  264 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~------------~  264 (438)
                      .+|+++|...  .+++++.+++++.+|+++|.+++++++||+|++ ++++|+||..|++++......            .
T Consensus         4 ~~v~dim~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T 3sl7_A            4 YTVGDFMTPR--QNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS   80 (180)
T ss_dssp             CBHHHHSEEG--GGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------
T ss_pred             eeHHHhcCCC--CCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccc
Confidence            4589999821  279999999999999999999999999999987 899999999999853211100            0


Q ss_pred             Ccc---------cccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669          265 DWF---------DIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  335 (438)
Q Consensus       265 ~~~---------~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l  335 (438)
                      .|.         ......++++    +|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+||+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~  154 (180)
T 3sl7_A           81 TWKTFNELQKLISKTYGKVVGD----LMTP-SPLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAA  154 (180)
T ss_dssp             CCCSHHHHHHHHHTTTTCBHHH----HSEE-SCCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHH
T ss_pred             hhhhhHHHHHHHhccccccHHH----HhCC-CceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHH
Confidence            000         0123567888    7876 7899999999999999999999999999997 89999999999999887


Q ss_pred             c
Q 013669          336 L  336 (438)
Q Consensus       336 ~  336 (438)
                      .
T Consensus       155 ~  155 (180)
T 3sl7_A          155 L  155 (180)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.60  E-value=4.1e-15  Score=141.82  Aligned_cols=131  Identities=19%  Similarity=0.303  Sum_probs=106.8

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHc-----CCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  345 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~  345 (438)
                      ...++++    +|++ +++++.+++++.++++.|.++     +++++||+|+ +++++|+||.+|++..  .       .
T Consensus       133 ~~~~v~~----iM~~-~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~--~-------~  197 (278)
T 2yvy_A          133 EEDEAGG----LMTP-EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA--D-------P  197 (278)
T ss_dssp             CTTBGGG----TCBS-CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT-TCBEEEEEEHHHHHHS--C-------T
T ss_pred             CcchHHh----hcCC-CceEECCCCcHHHHHHHHHHccCCccceeEEEEECC-CCCEEEEEEHHHHhcC--C-------C
Confidence            3457888    8987 899999999999999999987     7899999997 7999999999999864  1       2


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCccc
Q 013669          346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHLD  425 (438)
Q Consensus       346 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~~  425 (438)
                      ..++.++|.+            +++++++++++.+|++.|.+++++++||||++| +++|+||..||++.+..+....+.
T Consensus       198 ~~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g-~lvGivT~~Dil~~i~~e~~ed~~  264 (278)
T 2yvy_A          198 RTRVAEIMNP------------KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-RLVGIVTVDDVLDVLEAEATEDIH  264 (278)
T ss_dssp             TCBSTTTSBS------------SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHC---------
T ss_pred             CCcHHHHhCC------------CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCC-eEEEEEEHHHHHHHHHHHhHHHHH
Confidence            4578999974            889999999999999999999999999999988 999999999999999887666555


Q ss_pred             ccch
Q 013669          426 NYFG  429 (438)
Q Consensus       426 ~~~~  429 (438)
                      .+-+
T Consensus       265 ~~~g  268 (278)
T 2yvy_A          265 KLGA  268 (278)
T ss_dssp             ----
T ss_pred             HhcC
Confidence            5443

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.60  E-value=2e-15  Score=144.60  Aligned_cols=126  Identities=19%  Similarity=0.317  Sum_probs=110.4

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHc-----CCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  345 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~  345 (438)
                      ...++++    +|++ +++++.+++++.++++.|.++     +++++||+|+ +|+++|+||.+|++...         .
T Consensus       135 ~~~~v~~----iM~~-~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~-~~~lvGivt~~dll~~~---------~  199 (286)
T 2oux_A          135 EDETAGA----IMTT-EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVND---------D  199 (286)
T ss_dssp             CTTBHHH----HCBS-CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTSC---------T
T ss_pred             ChHHHHH----hCCC-CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC-CCeEEEEEEHHHHHcCC---------C
Confidence            4568888    7987 899999999999999999998     7889999997 79999999999997541         2


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCCcc
Q 013669          346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPNHL  424 (438)
Q Consensus       346 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~~~  424 (438)
                      ..++.++|.+            +++++++++++.+|++.|.+++++++||||++| +++|+||..||++.+..+....+
T Consensus       200 ~~~v~~im~~------------~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIT~~Dil~~i~~e~~ed~  265 (286)
T 2oux_A          200 DTLIADILNE------------RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD-HLLGIVTVDDIIDVIDDEAASDY  265 (286)
T ss_dssp             TSBHHHHSBS------------CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHHHHHC--
T ss_pred             CCcHHHHcCC------------CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHHHHHHHhHHHH
Confidence            5689999985            889999999999999999999999999999988 99999999999999875433333

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.59  E-value=1.1e-14  Score=126.12  Aligned_cols=128  Identities=18%  Similarity=0.321  Sum_probs=109.4

Q ss_pred             CchhhhccccC--CCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCC
Q 013669          197 TTVRSIIKSYR--WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQP  274 (438)
Q Consensus       197 ~~v~di~~~~~--~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~  274 (438)
                      .+|+++|....  ..+++++.+++++.+|+++|.+++++++||.+ + ++++|++|..|+++.+......     ....+
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~-~~~~Givt~~dl~~~~~~~~~~-----~~~~~   79 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G-DDIAGIVTERDYARKVVLQERS-----SKATR   79 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S-SSEEEEEEHHHHHHHSGGGTCC-----SSSCB
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C-CEEEEEEEHHHHHHHHHhccCC-----ccccC
Confidence            45899998431  15679999999999999999999999999966 4 8999999999999987653211     14568


Q ss_pred             ccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013669          275 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  338 (438)
Q Consensus       275 v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~  338 (438)
                      +++    +|.+ ++.++.+++++.++++.|.+++++++||+|  +|+++|+||.+|++..+...
T Consensus        80 v~~----~m~~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           80 VEE----IMTA-KVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             HHH----HSBS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTT
T ss_pred             HHH----HcCC-CCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHHH
Confidence            888    7887 889999999999999999999999999999  69999999999999998753

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.59  E-value=1.3e-14  Score=131.90  Aligned_cols=122  Identities=11%  Similarity=0.275  Sum_probs=108.9

Q ss_pred             CCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhC---CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccc
Q 013669          193 PFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY---RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDI  269 (438)
Q Consensus       193 ~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~---~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~  269 (438)
                      .|...+++++|.    .+++++++++|+.+|++.|.++   +++.+||+|++ ++++|+||.+|++..   .        
T Consensus        50 ~~~~~~v~~iM~----~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~---~--------  113 (205)
T 3kxr_A           50 QYSENEIGRYTD----HQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-DKYLGTVRRYDIFKH---E--------  113 (205)
T ss_dssp             HSCTTCGGGGCB----CCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-CBEEEEEEHHHHTTS---C--------
T ss_pred             CCCcchHHhhcc----CceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-CeEEEEEEHHHHHhC---C--------
Confidence            366678999999    6799999999999999999987   89999999987 899999999998642   1        


Q ss_pred             cccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                       ...++++    +|++ +++++.+++++.++++.|.++++..+||+|+ +|+++|+||..|++..+..
T Consensus       114 -~~~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          114 -PHEPLIS----LLSE-DSRALTANTTLLDAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             -TTSBGGG----GCCS-SCCCEETTSCHHHHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             -CcchHHH----HhcC-CCeEECCCCCHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence             3467889    7886 8999999999999999999999999999997 8999999999999998753

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.58  E-value=9.2e-15  Score=126.88  Aligned_cols=130  Identities=19%  Similarity=0.226  Sum_probs=108.0

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCE-EEEEcCCCCCEEEEEeHHHHHHHhhcC-----CCCCc-
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRN-VPIIEPGTPDIKNYITQSAVVQGLEGC-----KGRDW-  266 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~-lpVvd~~~~~v~Giit~~Di~~~l~~~-----~~~~~-  266 (438)
                      +...+++++|.    .+++++.+++++.+|+++|.++++++ +||+|++  +++|+||..|+++++...     ..... 
T Consensus        13 ~~~~~v~~im~----~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~   86 (157)
T 1o50_A           13 MKVKDVCKLIS----LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELI   86 (157)
T ss_dssp             CBHHHHTTSSC----CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-----
T ss_pred             hccccHhhccc----CCCceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHH
Confidence            44566999998    78999999999999999999999999 9999974  899999999999875410     00000 


Q ss_pred             ---ccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          267 ---FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       267 ---~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                         .......++.+    +|.+  ++++.+++++.++++.|.+++++++||+|+ +|+++|+||..||+..+.
T Consensus        87 ~~~~~~~~~~~v~~----im~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           87 RSSMKRLIAKNASE----IMLD--PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             --CCCCCSSCBHHH----HCBC--CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHH----HcCC--CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence               01224567888    6875  889999999999999999999999999997 799999999999998865

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.58  E-value=1.5e-14  Score=128.71  Aligned_cols=136  Identities=10%  Similarity=0.205  Sum_probs=109.1

Q ss_pred             CCCCchhhhccccCCCCceEE--eCCCCHHHHHHHHHhCCCCEEEEE--cCCCCCEEEEEeHHHHHHHhhcCCCC--Cc-
Q 013669          194 FKSTTVRSIIKSYRWAPFLPV--ATDDSMLSVLLLLSKYRLRNVPII--EPGTPDIKNYITQSAVVQGLEGCKGR--DW-  266 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v--~~~~sl~~al~~m~~~~i~~lpVv--d~~~~~v~Giit~~Di~~~l~~~~~~--~~-  266 (438)
                      ....+++++|......+++++  .+++++.+|+++|.+++++++||+  |++ ++++|+||..|+++.+......  .. 
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~-~~lvGiit~~dl~~~~~~~~~~~~~~~   86 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-QRLVGFVLRRDLIISIENARKKQDGVV   86 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-CBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC-CeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence            445679999983322237788  999999999999999999999999  555 8999999999999887532100  00 


Q ss_pred             ---------------ccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHH
Q 013669          267 ---------------FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI  331 (438)
Q Consensus       267 ---------------~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl  331 (438)
                                     .......++.+    +|.+ +++++.+++++.++++.|.+++++++||++  +|+++|+||.+||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dl  159 (185)
T 2j9l_A           87 STSIIYFTEHSPPLPPYTPPTLKLRN----ILDL-SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDV  159 (185)
T ss_dssp             TTCEEECSSSCCCCCTTCCCCEECGG----GEES-SCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHH
T ss_pred             ccceeecccCCcccccccccCccHHH----hhCc-CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHH
Confidence                           00123456777    7876 789999999999999999999999999999  6999999999999


Q ss_pred             HHHhcC
Q 013669          332 RHLLLK  337 (438)
Q Consensus       332 ~~~l~~  337 (438)
                      +..+..
T Consensus       160 l~~l~~  165 (185)
T 2j9l_A          160 LKHIAQ  165 (185)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988753

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.58  E-value=9.7e-15  Score=136.55  Aligned_cols=140  Identities=17%  Similarity=0.267  Sum_probs=102.3

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC-CCeEEEEEeHHHHHHHhcCC----ccc-cc-
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKP----ELF-SN-  343 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~l~~~----~~~-~~-  343 (438)
                      ...++++    +|++ +++++.+++++.++.++|.+++++++||||+. +++++|+|+.+||+.++...    ... .. 
T Consensus        11 ~~~~v~d----iMt~-~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~   85 (250)
T 2d4z_A           11 YNIQVGD----IMVR-DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAA   85 (250)
T ss_dssp             SSCBTTS----SSBS-SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCC
T ss_pred             CCCChHH----hcCC-CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhh
Confidence            4567889    8997 89999999999999999999999999999862 26899999999998876421    000 00 


Q ss_pred             -------------------------ccc----------------------------------------------------
Q 013669          344 -------------------------FRQ----------------------------------------------------  346 (438)
Q Consensus       344 -------------------------~~~----------------------------------------------------  346 (438)
                                               +..                                                    
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (250)
T 2d4z_A           86 AEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVAS  165 (250)
T ss_dssp             CCBCCC--------------------------------------------------------------------------
T ss_pred             hcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCc
Confidence                                     000                                                    


Q ss_pred             -----CcHHH-------HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 013669          347 -----LTVRD-------FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVIS  414 (438)
Q Consensus       347 -----~~v~~-------~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~  414 (438)
                           ++..+       .+.... +....-....++++.++++|.+|..+|...+++++||++. | +++||||+.||++
T Consensus       166 ~~~~~i~~~~~~~~~~~~l~~~V-dl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~-G-rLVGIVTrkDl~k  242 (250)
T 2d4z_A          166 RFEEMLTLEEIYRWEQREKNVVV-NFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-G-KLVGVVALAEIQA  242 (250)
T ss_dssp             -CCSCCBHHHHHHHHHHHTTCBC-CTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHH
T ss_pred             ccccccChhhhhhHHHHhcCcee-ccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC-C-EEEEEEEHHHHHH
Confidence                 00000       000000 0000001246789999999999999999999999999985 5 9999999999999


Q ss_pred             Hhhc
Q 013669          415 CFIF  418 (438)
Q Consensus       415 ~l~~  418 (438)
                      ++..
T Consensus       243 ai~~  246 (250)
T 2d4z_A          243 AIEG  246 (250)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            9873

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.56  E-value=1.5e-14  Score=135.10  Aligned_cols=222  Identities=14%  Similarity=0.169  Sum_probs=131.7

Q ss_pred             CCCccCCCCC---CCCCCCHHHHHHHHHHcCCccCceecCCCCCCCCcccceeEEeehhHHHHHHHHhhHHhhhhccccc
Q 013669           44 IPVLSFPNVP---GGRDTTIPDAVKILSECNILSAPVKIPDAPSSSDWKERYLGIVDYSAIILWVLETAELAAAAFSVGT  120 (438)
Q Consensus        44 ~pvs~~p~~~---~~~~~sv~~A~~~l~~~~i~~~PV~d~~~~~~~~~~~~~iGiv~~~di~~~~l~~~~~~~~~~~~~~  120 (438)
                      .+|+++...+   ..+++++.+|+++|.+++++++||+|++        ++++|+|+..||++.+............   
T Consensus         7 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~--------~~l~Giit~~di~~~~~~~~~~~~~~~~---   75 (245)
T 3l2b_A            7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN--------NHLLGMLSTSNITATYMDIWDSNILAKS---   75 (245)
T ss_dssp             CBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT--------CBEEEEEEHHHHHHHHHCCCCTTHHHHT---
T ss_pred             CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC--------CEEEEEEEHHHHHHHHHHhhhhhhhhhc---
Confidence            4555554321   1238999999999999999999999986        4999999999999987653211110000   


Q ss_pred             ccccccCCcccccchhhhccCCCcchhhhhhHHHhhhhhhccccccccCCCCCccccccccchhhhhhhccCCCCCCchh
Q 013669          121 ATAAGVGTGTVGALGALALGMTGPAAVAGLTVAAAGAAVAGGLAAEKGAGKDAPTAADRLHEDFYKVILQEEPFKSTTVR  200 (438)
Q Consensus       121 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~  200 (438)
                                             ...+..+.....+..+.|........|+            ++-     ..+....+.
T Consensus        76 -----------------------~~~~~~v~~~l~~~~l~~~~~~~~~~g~------------~~i-----~a~~~~~~~  115 (245)
T 3l2b_A           76 -----------------------ATSLDNILDTLSAEAQNINEERKVFPGK------------VVV-----AAMQAESLK  115 (245)
T ss_dssp             -----------------------TCCHHHHHHHTTCEEEECCTTCCCCCSC------------EEE-----CCSCGGGGG
T ss_pred             -----------------------cCCHHHHHHHhCCEEEeccCCcceeeee------------EEE-----EeCChHHHH
Confidence                                   0001111111111111110000000000            000     000001111


Q ss_pred             hhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC-----------CCCEEEEEeHHHHHHHhhcCCCCCcccc
Q 013669          201 SIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-----------TPDIKNYITQSAVVQGLEGCKGRDWFDI  269 (438)
Q Consensus       201 di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~-----------~~~v~Giit~~Di~~~l~~~~~~~~~~~  269 (438)
                      +.+.   ...++.+ .+  -.++...+.+.++..+++++..           .+.+..+.|..|.........       
T Consensus       116 ~~~~---~~~ivIv-gd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~~~~~~i~t~~d~~~~~~~~~-------  182 (245)
T 3l2b_A          116 EFIS---EGDIAIA-GD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLIV-------  182 (245)
T ss_dssp             GTCC---TTCEEEE-CS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHHHTCEEEECSSCHHHHHHHGG-------
T ss_pred             hcCC---CCCEEEE-CC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHcCCeEEEeCCChHHHHHHHh-------
Confidence            2222   2344444 22  4788888889999999888642           123456677766654332211       


Q ss_pred             cccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669          270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  335 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l  335 (438)
                       ...++++    +|++.+++++.+++++.+++++|.+++++++||+|+ +|+++|+||.+|++...
T Consensus       183 -~~~~v~~----im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          183 -QSLPVDY----VMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE-NNKVVGSIARFHLISTH  242 (245)
T ss_dssp             -GGSBHHH----HSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEECC------
T ss_pred             -cCCceee----EecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC-CCeEEEEEEHHHhhchh
Confidence             3457888    798238999999999999999999999999999997 79999999999998763

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.55  E-value=2.7e-14  Score=133.53  Aligned_cols=134  Identities=14%  Similarity=0.164  Sum_probs=105.2

Q ss_pred             CCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhcCC---CC--Cc--
Q 013669          195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCK---GR--DW--  266 (438)
Q Consensus       195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~-~~~v~Giit~~Di~~~l~~~~---~~--~~--  266 (438)
                      ...+|+|+|.    .+++++.+++++.+|.++|.+++++++||+|++ +++++|+||..|+++++....   ..  .+  
T Consensus        11 ~~~~v~diMt----~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~   86 (250)
T 2d4z_A           11 YNIQVGDIMV----RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA   86 (250)
T ss_dssp             SSCBTTSSSB----SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred             CCCChHHhcC----CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence            3457999999    789999999999999999999999999999974 268999999999998764220   00  00  


Q ss_pred             ------------------------c-c-----------------------------------------------------
Q 013669          267 ------------------------F-D-----------------------------------------------------  268 (438)
Q Consensus       267 ------------------------~-~-----------------------------------------------------  268 (438)
                                              + .                                                     
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (250)
T 2d4z_A           87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR  166 (250)
T ss_dssp             CBCCC---------------------------------------------------------------------------
T ss_pred             cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence                                    0 0                                                     


Q ss_pred             ---------------ccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHH
Q 013669          269 ---------------IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH  333 (438)
Q Consensus       269 ---------------~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~  333 (438)
                                     .....++. |.-.+|++ .++++.+++++.++..+|...|++++||++  .|+++|+||++||++
T Consensus       167 ~~~~i~~~~~~~~~~~~l~~~Vd-l~~~~md~-sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~k  242 (250)
T 2d4z_A          167 FEEMLTLEEIYRWEQREKNVVVN-FETCRIDQ-SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQA  242 (250)
T ss_dssp             CCSCCBHHHHHHHHHHHTTCBCC-TTSSCEEC-CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHH
T ss_pred             cccccChhhhhhHHHHhcCceec-cccccccC-CCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHH
Confidence                           00011110 00015776 889999999999999999999999999998  699999999999999


Q ss_pred             Hhc
Q 013669          334 LLL  336 (438)
Q Consensus       334 ~l~  336 (438)
                      ++.
T Consensus       243 ai~  245 (250)
T 2d4z_A          243 AIE  245 (250)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.50  E-value=5.6e-14  Score=145.78  Aligned_cols=127  Identities=17%  Similarity=0.188  Sum_probs=109.8

Q ss_pred             cccCCccccccCCCCCCCceEEcCC-CcHHHHHHHHHHcCCceEeEEe-CCCCeEEEEEeHHHHHHHhcCCccccccccC
Q 013669          270 IASQPISDLGLPFMSSDEVITIQSN-ELILEAFKRMKDNNIGGIPVVE-GQQKKIVGNVSIRDIRHLLLKPELFSNFRQL  347 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~~~vv~v~~~-~~l~~a~~~m~~~~~~~lpVvd-~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~  347 (438)
                      +...++++    +|++ +++++.++ +++.+++++|.+++++++||+| + +++++|+||.+||+..+....   .....
T Consensus       381 l~~~~V~d----iM~~-~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~-~g~lvGiVt~~Dll~~l~~~~---~~~~~  451 (527)
T 3pc3_A          381 WWSLAIAE----LELP-APPVILKSDATVGEAIALMKKHRVDQLPVVDQD-DGSVLGVVGQETLITQIVSMN---RQQSD  451 (527)
T ss_dssp             TTTSBGGG----GCCC-CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT-TCCEEEEEEHHHHHHHHHHHC---CCTTS
T ss_pred             ccCCcHHH----hCcC-CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC-CCEEEEEEEHHHHHHHHHhcc---CcCCC
Confidence            34678899    7886 89999999 9999999999999999999999 6 789999999999998775321   12356


Q ss_pred             cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCC----CCeEEEEEeHHHHHHHhhcCC
Q 013669          348 TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGE----EAEVVGVITLRDVISCFIFEP  420 (438)
Q Consensus       348 ~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~----g~~lvGvIT~~DIl~~l~~e~  420 (438)
                      +|.++|++            +++++.+++++.+++++|.++++  +||||++    | +++||||++||++++....
T Consensus       452 ~V~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g-~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          452 PAIKALNK------------RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKV-ELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             BGGGGEET------------TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCE-EEEEEEEHHHHHHHHHTCC
T ss_pred             cHHHHhcC------------CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCC-eEEEEEEHHHHHHHHHhcc
Confidence            89999985            89999999999999999977664  7999985    7 9999999999999998643

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.50  E-value=1.1e-13  Score=132.44  Aligned_cols=122  Identities=15%  Similarity=0.322  Sum_probs=109.4

Q ss_pred             CCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc
Q 013669          192 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW  266 (438)
Q Consensus       192 ~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~  266 (438)
                      ..+...+++++|.    .+++++.+++++.+|++.|.++     +++++||+|++ ++++|+||..|+++..        
T Consensus       132 l~~~~~~v~~iM~----~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dll~~~--------  198 (286)
T 2oux_A          132 LHYEDETAGAIMT----TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVND--------  198 (286)
T ss_dssp             TTSCTTBHHHHCB----SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSC--------
T ss_pred             hcCChHHHHHhCC----CCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHHHcCC--------
Confidence            3566788999998    6799999999999999999987     88999999987 8999999999996531        


Q ss_pred             ccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          267 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       267 ~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                          ...++.+    +|.+ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||..|++..+.
T Consensus       199 ----~~~~v~~----im~~-~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          199 ----DDTLIAD----ILNE-RVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             ----TTSBHHH----HSBS-CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ----CCCcHHH----HcCC-CCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHH
Confidence                3467888    7876 8999999999999999999999999999997 899999999999998875

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.48  E-value=2.2e-13  Score=139.21  Aligned_cols=120  Identities=20%  Similarity=0.318  Sum_probs=107.7

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHc-----CCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccc
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR  345 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~  345 (438)
                      ...++++    +|++ +++++++++++.++++.|.++     +++++||+|+ +++++|++|.+|++..  .       .
T Consensus       153 ~~~~v~~----iM~~-~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~-~~~lvGiVt~~Dll~~--~-------~  217 (473)
T 2zy9_A          153 EEDEAGG----LMTP-EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA--D-------P  217 (473)
T ss_dssp             CTTBSTT----TCBS-CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT-TSBEEEEEEHHHHHHS--C-------T
T ss_pred             CCCCHHH----hCCC-CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC-CCcEEEEEEHHHHhcC--C-------C
Confidence            4567888    8987 899999999999999999986     5789999997 7999999999999863  1       2


Q ss_pred             cCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       346 ~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      +.++.++|++            +++++++++++.++++.|.+++.+.+||||++| +++|+||.+||++.+..
T Consensus       218 ~~~v~dim~~------------~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g-~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          218 RTRVAEIMNP------------KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-RLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             TSBGGGTSBS------------SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHH
T ss_pred             CCcHHHHhCC------------CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCC-EEEEEEehHhhHHHHHH
Confidence            4589999974            889999999999999999999999999999998 99999999999998764

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.48  E-value=3.5e-13  Score=128.37  Aligned_cols=121  Identities=15%  Similarity=0.326  Sum_probs=107.2

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccc
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD  268 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~  268 (438)
                      +...+++++|.    .+++++.+++++.+|++.|.++     ++.++||+|.+ ++++|+||..|++..   .       
T Consensus       132 ~~~~~v~~iM~----~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~---~-------  196 (278)
T 2yvy_A          132 YEEDEAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA---D-------  196 (278)
T ss_dssp             SCTTBGGGTCB----SCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHS---C-------
T ss_pred             CCcchHHhhcC----CCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHHHhcC---C-------
Confidence            55678999998    6799999999999999999987     78999999987 899999999999753   1       


Q ss_pred             ccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          269 IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       269 ~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                        ...++++    +|.+ +++++++++++.++++.|.+++...+||+|+ +|+++|+||..|++..+..
T Consensus       197 --~~~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          197 --PRTRVAE----IMNP-KVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             --TTCBSTT----TSBS-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHC--
T ss_pred             --CCCcHHH----HhCC-CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-CCeEEEEEEHHHHHHHHHH
Confidence              3467888    7876 8999999999999999999999999999997 7999999999999988753

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.44  E-value=3.8e-13  Score=139.49  Aligned_cols=128  Identities=9%  Similarity=0.180  Sum_probs=109.7

Q ss_pred             CCCCCchhhhccccCCCCceEEeCC-CCHHHHHHHHHhCCCCEEEEEc-CCCCCEEEEEeHHHHHHHhhcCCCCCccccc
Q 013669          193 PFKSTTVRSIIKSYRWAPFLPVATD-DSMLSVLLLLSKYRLRNVPIIE-PGTPDIKNYITQSAVVQGLEGCKGRDWFDII  270 (438)
Q Consensus       193 ~~~~~~v~di~~~~~~~~~i~v~~~-~sl~~al~~m~~~~i~~lpVvd-~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l  270 (438)
                      .+...+|+++|.    .+++++.++ +++.+|+++|.+++++++||+| ++ ++++|+||.+||++.+.....      .
T Consensus       380 ~l~~~~V~diM~----~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~-g~lvGiVt~~Dll~~l~~~~~------~  448 (527)
T 3pc3_A          380 WWWSLAIAELEL----PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD-GSVLGVVGQETLITQIVSMNR------Q  448 (527)
T ss_dssp             TTTTSBGGGGCC----CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT-CCEEEEEEHHHHHHHHHHHCC------C
T ss_pred             cccCCcHHHhCc----CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC-CEEEEEEEHHHHHHHHHhccC------c
Confidence            355688999998    789999999 9999999999999999999999 55 899999999999988765311      1


Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC---CCeEEEEEeHHHHHHHhcCC
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ---QKKIVGNVSIRDIRHLLLKP  338 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---~~~lvGiIs~~Dl~~~l~~~  338 (438)
                      ...++.+    +|++ +++++.+++++.+++++|.++++  +||+|++   +|+++|+||..||+..+.+.
T Consensus       449 ~~~~V~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          449 QSDPAIK----ALNK-RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             TTSBGGG----GEET-TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             CCCcHHH----HhcC-CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence            4568899    7887 89999999999999999977765  6999862   28999999999999998753

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.42  E-value=3.7e-14  Score=150.02  Aligned_cols=129  Identities=14%  Similarity=0.096  Sum_probs=102.3

Q ss_pred             cCCccccccCCCCC-CCceEEcCCCcHHHHHHHHH-HcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccc------
Q 013669          272 SQPISDLGLPFMSS-DEVITIQSNELILEAFKRMK-DNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSN------  343 (438)
Q Consensus       272 ~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~-~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~------  343 (438)
                      ..++++    +|++ +++.++++++++.++.+.|. +++++++||+|+ +++++|+||.+|++..+.+......      
T Consensus       452 ~~~V~d----iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~  526 (632)
T 3org_A          452 EMTARE----IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGH  526 (632)
T ss_dssp             TSBHHH----HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC-----------
T ss_pred             cCcHHH----HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhcccccccc
Confidence            457888    7882 27899999999999999999 799999999998 8999999999999887653210000      


Q ss_pred             --------------ccc------------------------CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHH
Q 013669          344 --------------FRQ------------------------LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSL  385 (438)
Q Consensus       344 --------------~~~------------------------~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m  385 (438)
                                    ...                        .++.++|+            ++++++++++++.+++++|
T Consensus       527 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt------------~~pitV~~~~~l~ea~~~M  594 (632)
T 3org_A          527 RTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCD------------VSPIVVTSYSLVRQLHFLF  594 (632)
T ss_dssp             --------------------------------------------CCSCC------------CCCCEEETTCBHHHHHHHH
T ss_pred             cceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhc------------CCCceecCCCcHHHHHHHH
Confidence                          000                        01333443            4789999999999999999


Q ss_pred             HhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          386 ASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       386 ~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      .+++++++||+ ++| +++||||++||++.+..+
T Consensus       595 ~~~~i~~lpVv-e~G-~lvGIVT~~Dll~~~~~~  626 (632)
T 3org_A          595 VMLMPSMIYVT-ERG-KLVGIVEREDVAYGYSNS  626 (632)
T ss_dssp             HHTCCSEEEEE-ETT-EEEEEEEGGGTEECCCC-
T ss_pred             HhcCCCEEEEE-ECC-EEEEEEehhhHHHHHhhh
Confidence            99999999999 666 999999999999887654

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.37  E-value=2.9e-12  Score=131.72  Aligned_cols=116  Identities=23%  Similarity=0.387  Sum_probs=102.7

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC-CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTT  360 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~  360 (438)
                      .|.. +++++.+++++.+++++|.+++++++||+|+. +++++|+||.+|++..        .....++.++|++     
T Consensus       118 ~m~~-d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~~--------~~~~~~V~~vM~~-----  183 (511)
T 3usb_A          118 GVIS-DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFI--------QDYSIKISDVMTK-----  183 (511)
T ss_dssp             CSSS-SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTTC--------CCSSSBHHHHCCC-----
T ss_pred             cccc-CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhhh--------ccCCCcHHHhccc-----
Confidence            5665 78999999999999999999999999999841 4799999999999651        1135689999983     


Q ss_pred             CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                            .+++++++++++.++++.|.+++++.+||||++| +++|+||..||++.+..
T Consensus       184 ------~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g-~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          184 ------EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNG-VLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             ------CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHC
T ss_pred             ------CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCC-CEeeeccHHHHHHhhhc
Confidence                  2789999999999999999999999999999998 99999999999999875

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.35  E-value=4.6e-13  Score=137.19  Aligned_cols=115  Identities=23%  Similarity=0.287  Sum_probs=89.5

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhc-ccCCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMN-AVVPTT  360 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~-~~~~~~  360 (438)
                      +|.. +++++.+++++.+++++|.+++++++||+|+ +++++|+||.+|++..        .....++.++|+ .     
T Consensus        94 ~m~~-d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~~~--------~~~~~~v~diM~p~-----  158 (496)
T 4fxs_A           94 GVVT-HPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVRFV--------TDLTKSVAAVMTPK-----  158 (496)
T ss_dssp             --CB-CCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHTTC--------CCTTSBGGGTSEEG-----
T ss_pred             cccc-CceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHhhc--------ccCCCcHHHHhcCC-----
Confidence            6776 8899999999999999999999999999998 7999999999999622        113568999998 3     


Q ss_pred             CCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          361 PDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       361 ~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                            .+++++++++++.++++.|.+++++.+||||++| +++|+||++||++....
T Consensus       159 ------~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G-~l~GiIT~~DIl~~~~~  209 (496)
T 4fxs_A          159 ------ERLATVKEGATGAEVQEKMHKARVEKILVVNDEF-QLKGMITAKDFHKAESK  209 (496)
T ss_dssp             ------GGCCEEECC----CGGGTCC---CCCEEEECTTS-BCCEEECCC-----CCC
T ss_pred             ------CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-CEEEeehHhHHHHhhcc
Confidence                  2589999999999999999999999999999998 99999999999997653

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.35  E-value=4.3e-12  Score=129.63  Aligned_cols=122  Identities=15%  Similarity=0.322  Sum_probs=108.8

Q ss_pred             CCCCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc
Q 013669          192 EPFKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW  266 (438)
Q Consensus       192 ~~~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~  266 (438)
                      ..+...+++++|.    .+++++++++++.+|++.|.++     +++++||+|++ ++++|++|.+|++..   .     
T Consensus       150 l~~~~~~v~~iM~----~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~---~-----  216 (473)
T 2zy9_A          150 ARYEEDEAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA---D-----  216 (473)
T ss_dssp             HTSCTTBSTTTCB----SCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHS---C-----
T ss_pred             hcCCCCCHHHhCC----CCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-CcEEEEEEHHHHhcC---C-----
Confidence            3456678999999    6799999999999999999986     57899999987 899999999999762   1     


Q ss_pred             ccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          267 FDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       267 ~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                          ...++++    +|++ +++++++++++.++++.|.+++...+||+|+ +|+++|+||..|++..+.
T Consensus       217 ----~~~~v~d----im~~-~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          217 ----PRTRVAE----IMNP-KVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             ----TTSBGGG----TSBS-SCCCEESSSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ----CCCcHHH----HhCC-CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC-CCEEEEEEehHhhHHHHH
Confidence                3568899    8986 8999999999999999999999999999998 899999999999998875

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.34  E-value=1.1e-11  Score=127.42  Aligned_cols=156  Identities=21%  Similarity=0.300  Sum_probs=122.4

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcC--CCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEP--GTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  286 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~--~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~  286 (438)
                      .+++++++++++.+++++|.+++++++||+|+  + ++++|+||.+|+..  ..    .     ...++++    +|++.
T Consensus       121 ~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-~~lvGiVt~rDl~~--~~----~-----~~~~V~~----vM~~~  184 (511)
T 3usb_A          121 SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-RKLVGIITNRDMRF--IQ----D-----YSIKISD----VMTKE  184 (511)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-CBEEEEEEHHHHTT--CC----C-----SSSBHHH----HCCCC
T ss_pred             cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-CEEEEEEEehHhhh--hc----c-----CCCcHHH----hcccC
Confidence            56889999999999999999999999999997  5 89999999999954  11    1     4568888    78754


Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKV  366 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~  366 (438)
                      +++++++++++.+++++|.++++..+||+|+ +|+++|+||.+|++..+..+..        +.+.+..          .
T Consensus       185 ~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~~~~~p~a--------~~D~~~r----------l  245 (511)
T 3usb_A          185 QLITAPVGTTLSEAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEKVIEFPNS--------AKDKQGR----------L  245 (511)
T ss_dssp             CCCCEETTCCHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHCTTC--------CBCTTSC----------B
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHHhhhcccc--------hhhhccc----------e
Confidence            7899999999999999999999999999998 8999999999999998764321        1122221          0


Q ss_pred             CCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCC
Q 013669          367 NPPITCKLESTLGSVIHSLASKSVHRIYVVAGE  399 (438)
Q Consensus       367 ~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~  399 (438)
                      .....+.......+.++.|.+.++..++|-..+
T Consensus       246 ~V~aavg~~~d~~era~aLveaGvd~I~Id~a~  278 (511)
T 3usb_A          246 LVGAAVGVTADAMTRIDALVKASVDAIVLDTAH  278 (511)
T ss_dssp             CCEEEECSSTTHHHHHHHHHHTTCSEEEEECSC
T ss_pred             eeeeeeeeccchHHHHHHHHhhccceEEecccc
Confidence            122344445455666778888898887665444

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.32  E-value=1.5e-13  Score=141.41  Aligned_cols=116  Identities=10%  Similarity=0.162  Sum_probs=0.0

Q ss_pred             CCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCC---CeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013669          283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQ---KKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT  359 (438)
Q Consensus       283 m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~---~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~  359 (438)
                      |.+ +++++.+++++.+++++|.+++++++||+|+ +   ++++|+||.+|++..  .     .....++.++|++.   
T Consensus       103 M~~-~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~-~~~~g~lvGiVt~~Dl~~~--~-----~~~~~~V~diM~~~---  170 (503)
T 1me8_A          103 FVV-SDSNVKPDQTFADVLAISQRTTHNTVAVTDD-GTPHGVLLGLVTQRDYPID--L-----TQTETKVSDMMTPF---  170 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccc-CCeEECCCCcHHHHHHHHHHcCceEEEEEEC-CCcCCeEEEEEEHHHHHhh--h-----ccccCcHHHHhCCC---
Confidence            776 8999999999999999999999999999996 5   899999999999864  1     11356899999840   


Q ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                             .+++++++++++.+|+++|.+++++++||||++| +++|+||.+||++.+..
T Consensus       171 -------~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g-~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          171 -------SKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQ-HLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             -----------------------------------------------------------
T ss_pred             -------CCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCC-eEEEEEEecHHHHhhhc
Confidence                   1289999999999999999999999999999988 99999999999998874

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.32  E-value=1.2e-12  Score=138.44  Aligned_cols=132  Identities=16%  Similarity=0.071  Sum_probs=105.0

Q ss_pred             CCCchhhhccccCCCCceEEeCCCCHHHHHHHHH-hCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc-------
Q 013669          195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLS-KYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW-------  266 (438)
Q Consensus       195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~-~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~-------  266 (438)
                      ...+|+|+|...  +++.++++++++.++.+.|. +++++++||+|++ ++++|+||.+|+.+.+........       
T Consensus       451 ~~~~V~diM~p~--~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~  527 (632)
T 3org_A          451 PEMTAREIMHPI--EGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHR  527 (632)
T ss_dssp             TTSBHHHHCBCT--TTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC------------
T ss_pred             ccCcHHHHhhcC--CCceEecCCCcHHHHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhccccccccc
Confidence            567899999832  56899999999999999999 7999999999986 899999999999887654310000       


Q ss_pred             -------------ccccc---------------------cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceE
Q 013669          267 -------------FDIIA---------------------SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGI  312 (438)
Q Consensus       267 -------------~~~l~---------------------~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~l  312 (438)
                                   .....                     ..++++    +|++ +++++++++++.++.+.|.+++++++
T Consensus       528 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~----iMt~-~pitV~~~~~l~ea~~~M~~~~i~~l  602 (632)
T 3org_A          528 TLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV----PCDV-SPIVVTSYSLVRQLHFLFVMLMPSMI  602 (632)
T ss_dssp             -------------------------------------------CC----SCCC-CCCEEETTCBHHHHHHHHHHTCCSEE
T ss_pred             ceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch----hhcC-CCceecCCCcHHHHHHHHHhcCCCEE
Confidence                         00000                     012566    7887 88999999999999999999999999


Q ss_pred             eEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          313 PVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       313 pVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ||++  +|+++|+||.+|+++.+.
T Consensus       603 pVve--~G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          603 YVTE--RGKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             EEEE--TTEEEEEEEGGGTEECCC
T ss_pred             EEEE--CCEEEEEEehhhHHHHHh
Confidence            9995  799999999999976644

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.32  E-value=7.3e-12  Score=128.83  Aligned_cols=115  Identities=21%  Similarity=0.384  Sum_probs=103.1

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEe--CCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE--GQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPT  359 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~  359 (438)
                      +|.+ +++++.+++++.++++.|.+++++++||+|  + +++++|+||.+|++... +       ...++.++|++    
T Consensus        95 im~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-~~~lvGivt~~Dl~~~~-~-------~~~~v~~im~~----  160 (491)
T 1zfj_A           95 GVII-DPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-NRKLVGIITNRDMRFIS-D-------YNAPISEHMTS----  160 (491)
T ss_dssp             TTSS-SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-TCBEEEEEEHHHHHHCS-C-------SSSBTTTSCCC----
T ss_pred             cCcC-CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-CCEEEEEEEHHHHhhhc-c-------CCCcHHHHcCC----
Confidence            6887 889999999999999999999999999998  6 79999999999998641 1       25678899872    


Q ss_pred             CCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          360 TPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       360 ~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                             .+++++++++++.++++.|.+++++++||||++| +++|+||..||++.+..
T Consensus       161 -------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g-~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          161 -------EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG-RLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             -------SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS-BEEEEEEHHHHHHHHHC
T ss_pred             -------CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEEHHHHHHHHhc
Confidence                   1688999999999999999999999999999998 99999999999999874

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.27  E-value=4.9e-13  Score=137.58  Aligned_cols=152  Identities=13%  Similarity=0.148  Sum_probs=19.3

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  286 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~  286 (438)
                      .+++++++++++.+++++|.+++++++||+|++  .++++|+||.+|+.+. ..         ....++++    +|++ 
T Consensus       105 ~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~~---------~~~~~V~d----iM~~-  169 (503)
T 1me8_A          105 VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-LT---------QTETKVSD----MMTP-  169 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-hc---------cccCcHHH----HhCC-
Confidence            578999999999999999999999999999964  2689999999999763 11         14568888    7886 


Q ss_pred             C--ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013669          287 E--VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  364 (438)
Q Consensus       287 ~--vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  364 (438)
                      +  ++++++++++.+++++|.+++++.+||+|+ +|+++|+||.+||+..+..+..        ..+.+..         
T Consensus       170 ~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~~~~--------~~d~~~~---------  231 (503)
T 1me8_A          170 FSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD-DQHLRYIVFRKDYDRSQVCHNE--------LVDSQKR---------  231 (503)
T ss_dssp             -----------------------------------------------------CCC--------CBCTTSC---------
T ss_pred             CCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEecHHHHhhhcccc--------hhccccc---------
Confidence            5  999999999999999999999999999998 8999999999999988653221        1111110         


Q ss_pred             CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEE
Q 013669          365 KVNPPITCKLESTLGSVIHSLASKSVHRIYV  395 (438)
Q Consensus       365 ~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~V  395 (438)
                       ......+.. ....+.++.|.+.+++.+.|
T Consensus       232 -l~v~a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          232 -YLVGAGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             -BCCEEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             -cccccccCc-hhHHHHHHHHHhhhccceEE
Confidence             001133444 56667788899989887655

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.25  E-value=5.6e-13  Score=136.45  Aligned_cols=115  Identities=23%  Similarity=0.351  Sum_probs=0.4

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  361 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  361 (438)
                      +|.. +++++.+++++.+++++|.+++++++||+|  +++++|+||.+|++...        ....++.++|++.     
T Consensus        93 ~m~~-~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd--~g~lvGIVt~rDl~~~~--------~~~~~V~~vMtp~-----  156 (490)
T 4avf_A           93 AIVR-DPVTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLRVKP--------NAGDTVAAIMTPK-----  156 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Cccc-CceEeCCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEhHHhhhcc--------ccCCcHHHHhccC-----
Confidence            6776 789999999999999999999999999999  68999999999996431        1356899999820     


Q ss_pred             CCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       362 ~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                           .+++++++++++.+++++|.+++++.+||||++| +++|+||++||++....
T Consensus       157 -----~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g-~lvGiIT~~Dil~~~~~  207 (490)
T 4avf_A          157 -----DKLVTAREGTPLEEMKAKLYENRIEKMLVVDENF-YLRGLVTFRDIEKAKTY  207 (490)
T ss_dssp             --------------------------------------------------------C
T ss_pred             -----CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCC-cEEEEEehHHhhhhccC
Confidence                 2589999999999999999999999999999998 99999999999998653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.23  E-value=8.7e-13  Score=135.78  Aligned_cols=117  Identities=24%  Similarity=0.422  Sum_probs=6.3

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  361 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  361 (438)
                      +|.+ +++++.+++++.++++.|.+++++.+||+|+ +++++|+||.+|++...   .     ...++.++|++.     
T Consensus       100 iM~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~lvGivt~~Dl~~~~---~-----~~~~v~~im~~~-----  164 (494)
T 1vrd_A          100 GIIY-DPITVTPDMTVKEAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVRFEK---N-----LSKKIKDLMTPR-----  164 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcc-CCeEECCCCCHHHHHHHHHHcCceEEEEEcC-CCEEEEEEEHHHHHhhc---C-----CCCcHHHHhCCC-----
Confidence            6876 8999999999999999999999999999997 78999999999998631   1     246899999720     


Q ss_pred             CCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       362 ~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                           .+++++++++++.+++++|.+++++++||||++| +++|+||..||++.+..+
T Consensus       165 -----~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          165 -----EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDN-KLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             --------------------------------------------------CHHHHTCT
T ss_pred             -----CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCC-eEEEEEEHHHHHhhhccc
Confidence                 2689999999999999999999999999999998 999999999999998753

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.22  E-value=9.8e-13  Score=132.10  Aligned_cols=110  Identities=15%  Similarity=0.265  Sum_probs=0.4

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  364 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  364 (438)
                      +++++.++.++.+++++|.+++++.+||+++.  +++++||||.+|+...  +       ...+|.++|++         
T Consensus       147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d-------~~~~V~evMT~---------  208 (556)
T 4af0_A          147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D-------AETPIKSVMTT---------  208 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c-------cceEhhhhccc---------
Confidence            68999999999999999999999999999852  4689999999998653  2       24589999985         


Q ss_pred             CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          365 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       365 ~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                         ++++++...++.+|.++|.++++..+||||+++ +++|+||++||++.-..
T Consensus       209 ---~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g-~LvGlIT~kDi~k~~~~  258 (556)
T 4af0_A          209 ---EVVTGSSPITLEKANSLLRETKKGKLPIVDSNG-HLVSLVARSDLLKNQNY  258 (556)
T ss_dssp             -----------------------------------------------------C
T ss_pred             ---ceEEecCCCCHHHHHHHHHHccccceeEEccCC-cEEEEEEechhhhhhhC
Confidence               799999999999999999999999999999998 99999999999987653

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.19  E-value=1e-10  Score=120.20  Aligned_cols=118  Identities=19%  Similarity=0.321  Sum_probs=103.7

Q ss_pred             hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEc--CCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIE--PGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd--~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      +.++|.    .+++++.+++++.+++++|.+++++++||+|  ++ ++++|+||.+|+++..  .         ...+++
T Consensus        92 ~~~im~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-~~lvGivt~~Dl~~~~--~---------~~~~v~  155 (491)
T 1zfj_A           92 SENGVI----IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-RKLVGIITNRDMRFIS--D---------YNAPIS  155 (491)
T ss_dssp             HTTTTS----SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-CBEEEEEEHHHHHHCS--C---------SSSBTT
T ss_pred             HHhcCc----CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC-CEEEEEEEHHHHhhhc--c---------CCCcHH
Confidence            456777    6789999999999999999999999999999  55 8999999999997531  1         356788


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      +    +|++++++++++++++.++++.|.+++++.+||+|. +++++|++|..|++..+..
T Consensus       156 ~----im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          156 E----HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             T----SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             H----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHhc
Confidence            8    787436889999999999999999999999999998 8999999999999998874

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.15  E-value=1.5e-11  Score=125.92  Aligned_cols=116  Identities=15%  Similarity=0.232  Sum_probs=88.6

Q ss_pred             hhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccc
Q 013669          200 RSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLG  279 (438)
Q Consensus       200 ~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~  279 (438)
                      .++|.    .+++++++++++.+++++|.+++++++||+|++ ++++|+||.+|+..   .   ..     ...++.+  
T Consensus        92 ~~~m~----~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-~~lvGiVt~rDL~~---~---~~-----~~~~v~d--  153 (496)
T 4fxs_A           92 EAGVV----THPVTVRPEQTIADVMELTHYHGFAGFPVVTEN-NELVGIITGRDVRF---V---TD-----LTKSVAA--  153 (496)
T ss_dssp             CC--C----BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-SBEEEEEEHHHHTT---C---CC-----TTSBGGG--
T ss_pred             ccccc----cCceEECCCCCHHHHHHHHHHcCCcEEEEEccC-CEEEEEEEHHHHhh---c---cc-----CCCcHHH--
Confidence            44565    678999999999999999999999999999986 89999999999851   1   11     4567889  


Q ss_pred             cCCCC-CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          280 LPFMS-SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       280 l~~m~-~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                        +|+ .++++++++++++.+++++|.++++..+||+|+ +|+++|+||.+|+++...
T Consensus       154 --iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          154 --VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND-EFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             --TSEEGGGCCEEECC----CGGGTCC---CCCEEEECT-TSBCCEEECCC-----CC
T ss_pred             --HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEeehHhHHHHhhc
Confidence              788 435899999999999999999999999999998 899999999999998754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.13  E-value=1.2e-11  Score=126.45  Aligned_cols=117  Identities=18%  Similarity=0.284  Sum_probs=1.8

Q ss_pred             hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcccc
Q 013669          199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL  278 (438)
Q Consensus       199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l  278 (438)
                      +.++|.    .+++++++++++.+++++|.+++++++||+| + ++++|+||.+|+....           ....++++ 
T Consensus        90 ~~~~m~----~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-g~lvGIVt~rDl~~~~-----------~~~~~V~~-  151 (490)
T 4avf_A           90 HETAIV----RDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-GELVGIVTGRDLRVKP-----------NAGDTVAA-  151 (490)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             cccCcc----cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEhHHhhhcc-----------ccCCcHHH-
Confidence            445666    6688999999999999999999999999999 5 8999999999984211           13568888 


Q ss_pred             ccCCCC-CCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          279 GLPFMS-SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       279 ~l~~m~-~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                         +|+ .++++++++++++.+++++|.++++..+||+|+ +|+++|+||.+|+++....
T Consensus       152 ---vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~~  207 (490)
T 4avf_A          152 ---IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAKTY  207 (490)
T ss_dssp             -----------------------------------------------------------C
T ss_pred             ---HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhccC
Confidence               788 336999999999999999999999999999998 8999999999999988643

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.09  E-value=2.4e-11  Score=125.03  Aligned_cols=119  Identities=20%  Similarity=0.373  Sum_probs=6.4

Q ss_pred             hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcccc
Q 013669          199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL  278 (438)
Q Consensus       199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l  278 (438)
                      +.++|.    .+++++.+++++.+|+++|.+++++.+||+|++ ++++|+||..|+.+.-      .     ...++.+ 
T Consensus        97 ~~~iM~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~~------~-----~~~~v~~-  159 (494)
T 1vrd_A           97 TENGII----YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFEK------N-----LSKKIKD-  159 (494)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             HhhcCc----cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhhc------C-----CCCcHHH-
Confidence            456777    679999999999999999999999999999976 8999999999997521      0     3467888 


Q ss_pred             ccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCC
Q 013669          279 GLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP  338 (438)
Q Consensus       279 ~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~  338 (438)
                         +|++ ++++++.+++++.+++++|.++++..+||+|+ +|+++|+||..|++..+..+
T Consensus       160 ---im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          160 ---LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             -----------------------------------------------------CHHHHTCT
T ss_pred             ---HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhccc
Confidence               7873 36899999999999999999999999999998 89999999999999987643

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.07  E-value=2.8e-12  Score=132.59  Aligned_cols=123  Identities=17%  Similarity=0.224  Sum_probs=70.3

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC--CCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ--QKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  351 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~  351 (438)
                      ++.+    +|.+ +++++.+++++.+++++|.+++++.+||+|++  +++++|+||.+|++....      .....++.+
T Consensus       109 ~~~~----im~~-~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~------~~~~~~v~~  177 (514)
T 1jcn_A          109 NFEQ----GFIT-DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE------KDHTTLLSE  177 (514)
T ss_dssp             TCCT----TSCS-SCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------
T ss_pred             hhhh----cccc-CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh------ccCCCCHHH
Confidence            4556    6776 78899999999999999999999999999852  389999999999976421      013568899


Q ss_pred             HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          352 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       352 ~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      +|.+          ..+++++++++++.+++++|.+++++++||||++| +++|+||++||++.+..
T Consensus       178 vm~~----------~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g-~lvGiIt~~Dll~~~~~  233 (514)
T 1jcn_A          178 VMTP----------RIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCD-ELVAIIARTDLKKNRDY  233 (514)
T ss_dssp             ---C----------CBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSS-CCC----CCCCSSCCCC
T ss_pred             HhCC----------CCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCC-eEEEEEEHHHHHHHhhC
Confidence            9972          01689999999999999999999999999999988 99999999999987753

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.07  E-value=4.4e-10  Score=83.41  Aligned_cols=65  Identities=25%  Similarity=0.369  Sum_probs=55.3

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcc
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNA  355 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~  355 (438)
                      +++++.+++++.+|+++|.+++++++||+|  +|+++|++|.+|+++.+.....  .+.+.+++++|++
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d--~~~lvGIvT~~Di~~~~~~~~~--~~~~~~V~~iMt~   65 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME--GDEILGVVTERDILDKVVAKGK--NPKEVKVEEIMTK   65 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHTTTTTC--CGGGCBGGGTCEE
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHhcCC--CcccCCHHHhcCC
Confidence            368999999999999999999999999998  6899999999999876543222  3456789999996

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.04  E-value=2.3e-11  Score=124.80  Aligned_cols=110  Identities=27%  Similarity=0.439  Sum_probs=0.5

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  361 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  361 (438)
                      .|.. +++++.+++++.++++.|.+++++++||+++  ++++|+|+.+|++.   +       ...++.++|.+      
T Consensus        98 ~m~~-~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~---~-------~~~~v~~im~~------  158 (486)
T 2cu0_A           98 LIVE-DVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA---R-------EGKLVKELMTK------  158 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc-CceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc---C-------CCCCHHHHccC------
Confidence            4665 8899999999999999999999999999984  89999999999975   1       24579999985      


Q ss_pred             CCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       362 ~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                            +++++++++++.++++.|.+++++.+||||++| +++|+||.+||++.+.
T Consensus       159 ------~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g-~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          159 ------EVITVPESIEVEEALKIMIENRIDRLPVVDERG-KLVGLITMSDLVARKK  207 (486)
T ss_dssp             -------------------------------------------------------C
T ss_pred             ------CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCC-eEEEEEEHHHHHHhhh
Confidence                  789999999999999999999999999999988 9999999999999865

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.01  E-value=3.5e-11  Score=120.90  Aligned_cols=110  Identities=25%  Similarity=0.311  Sum_probs=0.0

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCC
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSD  286 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~  286 (438)
                      ..++++.|+.|+.+|+++|.+++++.+||+|+.  +++++||||.+|+. +-  .         ...++++    +|++ 
T Consensus       146 ~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r-f~--d---------~~~~V~e----vMT~-  208 (556)
T 4af0_A          146 TDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ-FQ--D---------AETPIKS----VMTT-  208 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc-cc--c---------cceEhhh----hccc-
Confidence            358899999999999999999999999999863  37999999999973 21  1         3568999    8997 


Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ++++++++.++.+|.++|.++++..+||||+ +++++|+||.+|+.+...
T Consensus       209 ~lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          209 EVVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             --------------------------------------------------
T ss_pred             ceEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhhhh
Confidence            8999999999999999999999999999998 899999999999987653

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.96  E-value=1.1e-10  Score=119.69  Aligned_cols=158  Identities=23%  Similarity=0.312  Sum_probs=23.1

Q ss_pred             CCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          209 APFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       209 ~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      .+++++.+++++.+++++|.+++++++||+|+  ++++|+||.+|++.    .         ...++.+    +|++ ++
T Consensus       101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~----~---------~~~~v~~----im~~-~~  160 (486)
T 2cu0_A          101 EDVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA----R---------EGKLVKE----LMTK-EV  160 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc----C---------CCCCHHH----HccC-CC
Confidence            57899999999999999999999999999997  79999999999875    1         3457888    7886 78


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCCCCC
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNP  368 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~  368 (438)
                      +++++++++.++++.|.+++++.+||+|+ +++++|++|.+||+.....+..        ..+.+..          ..-
T Consensus       161 ~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~~~~~~--------~~~~~g~----------~~v  221 (486)
T 2cu0_A          161 ITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARKKYKNA--------VRDENGE----------LLV  221 (486)
T ss_dssp             -----------------------------------------------CCTTC--------CBCTTSC----------BCC
T ss_pred             eEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhhhcccc--------ccccCCc----------eee
Confidence            99999999999999999999999999997 8999999999999988542211        0010000          000


Q ss_pred             CeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEe
Q 013669          369 PITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT  408 (438)
Q Consensus       369 ~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT  408 (438)
                      ...+..++  .+.+..|.+.++..+ |++..+|+..++++
T Consensus       222 ~~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L~  258 (486)
T 2cu0_A          222 AAAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAIK  258 (486)
T ss_dssp             EEEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHHH
T ss_pred             cceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehhh
Confidence            11233333  566778889998875 66643335555443

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.95  E-value=1.6e-09  Score=80.27  Aligned_cols=68  Identities=13%  Similarity=0.223  Sum_probs=56.2

Q ss_pred             ceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCceE
Q 013669          211 FLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVIT  290 (438)
Q Consensus       211 ~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~vv~  290 (438)
                      ++++.|++++.+|+++|.+++++++||+|+  ++++||+|.+|+++.+.... .    .....++++    +|++ ++++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~-~----~~~~~~V~~----iMt~-~~iT   69 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKG-K----NPKEVKVEE----IMTK-NPVK   69 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTT-C----CGGGCBGGG----TCEE-CTTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcC-C----CcccCCHHH----hcCC-CCeE
Confidence            689999999999999999999999999985  79999999999987664321 1    124568999    8987 6654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.86  E-value=9.3e-11  Score=121.12  Aligned_cols=121  Identities=15%  Similarity=0.178  Sum_probs=68.7

Q ss_pred             hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      +.++|.    .+++++.+++++.+|+++|.+++++.+||+|++  +++++|+||..|+.+...         .....++.
T Consensus       110 ~~~im~----~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~---------~~~~~~v~  176 (514)
T 1jcn_A          110 FEQGFI----TDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE---------KDHTTLLS  176 (514)
T ss_dssp             CCTTSC----SSCCCCCC-----------------CEESCC--------CCEECTTTTC---------------------
T ss_pred             hhhccc----cCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh---------ccCCCCHH
Confidence            556776    668899999999999999999999999999973  379999999999865311         01346788


Q ss_pred             ccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          277 DLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       277 ~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      +    +|++ ++++++.+++++.+++++|.++++..+||+|+ +|+++|+||.+|++..+..
T Consensus       177 ~----vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~  233 (514)
T 1jcn_A          177 E----VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND-CDELVAIIARTDLKKNRDY  233 (514)
T ss_dssp             --------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-SSCCC----CCCCSSCCCC
T ss_pred             H----HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC-CCeEEEEEEHHHHHHHhhC
Confidence            8    7763 26899999999999999999999999999998 8999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	438
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	6e-17
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	2e-08
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-15
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	6e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	4e-12
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	1e-11
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	3e-10
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	4e-10
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	2e-06
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-09
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	3e-09
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	3e-09
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	4e-09
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	9e-09
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	2e-08
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	3e-08
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	2e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	3e-08
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-07
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	2e-07
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	6e-07
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	8e-07
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-06
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	1e-06
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	4e-06
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	4e-06
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	1e-05
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	1e-04
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	2e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	0.003

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.6 bits (185), Expect = 6e-17
 Identities = 19/129 (14%), Positives = 55/129 (42%)

Query: 285 SDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNF 344
           S +++   ++  + +AF  +  N +   P+ + +++  VG ++I D  ++L +    +  
Sbjct: 22  SSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALV 81

Query: 345 RQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVV 404
           +   + +                P +     ++L   + SL    +HR+ V+  E    +
Sbjct: 82  QIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTL 141

Query: 405 GVITLRDVI 413
            ++T + ++
Sbjct: 142 YILTHKRIL 150

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273
             T   +      L    +R  P+ +         +T +  +  L          I   +
Sbjct: 28  FDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELE 87

Query: 274 PISDLGLPF----MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIR 329
                         S   ++ I  N  + +A   +  N I  +PV++ +    +  ++ +
Sbjct: 88  EHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHK 147

Query: 330 DI-RHLLL 336
            I + L L
Sbjct: 148 RILKFLKL 155

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (173), Expect = 2e-15
 Identities = 23/147 (15%), Positives = 57/147 (38%), Gaps = 12/147 (8%)

Query: 272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
             PI DL +  ++ D + + Q    +++  + +    +  +P+++ +   ++      D+
Sbjct: 5   KIPIGDLNI--ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDV 61

Query: 332 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 391
             L+           +       +               TC     L +++ ++    VH
Sbjct: 62  LGLIKGGIYNDLSLSVGEALMRRSDD--------FEGVYTCTKNDKLSTIMDNIRKARVH 113

Query: 392 RIYVVAGEEAEVVGVITLRDVISCFIF 418
           R +VV  +   +VGV+TL D++   + 
Sbjct: 114 RFFVV-DDVGRLVGVLTLSDILKYILL 139

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (117), Expect = 6e-08
 Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 214 VATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQ 273
                 ++ V+ +L++ R+ +VPII     D   Y+        + G      ++ ++  
Sbjct: 22  CQMTTPVIDVIQMLTQGRVSSVPII-----DENGYLINVYEAYDVLGLIKGGIYNDLSLS 76

Query: 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI-R 332
               L       + V T   N+ +      ++   +    VV+    ++VG +++ DI +
Sbjct: 77  VGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILK 135

Query: 333 HLLL 336
           ++LL
Sbjct: 136 YILL 139

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.8 bits (149), Expect = 4e-12
 Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
           S+ + +L +   +   +  +++   +  A      + +  +PVV+ ++ ++V   S  D 
Sbjct: 8   SKSLEELQIG--TYANIAMVRTTTPVYVALGIFVQHRVSALPVVD-EKGRVVDIYSKFD- 63

Query: 332 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 391
             + L  E   N   ++V   +                + C L  TL ++I+ L    VH
Sbjct: 64  -VINLAAEKTYNNLDVSVTKALQHRSHYFE------GVLKCYLHETLEAIINRLVEAEVH 116

Query: 392 RIYVVAGEEAEVVGVITLRDVISCFIFEP 420
           R+ VV  E   V G+++L D++   +   
Sbjct: 117 RLVVV-DEHDVVKGIVSLSDILQALVLTG 144

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 24/148 (16%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333
           P++ + +   S   + T      + +  K + + NI  +P+V  +   +       D+ H
Sbjct: 2   PLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV-YESVDVMH 58

Query: 334 LLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRI 393
           L                  ++            +   TC+    L  +  ++    VHR+
Sbjct: 59  L--------IQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRL 110

Query: 394 YVVAGEEAEVVGVITLRDVISCFIFEPP 421
           +VV  E  ++ G+++L D+++  I++  
Sbjct: 111 FVV-DENLKLEGILSLADILNYIIYDKT 137

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 18/128 (14%)

Query: 286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFR 345
             V+ I  ++ +  A ++M  +NIG + V++ +  K+VG ++ RD               
Sbjct: 13  HTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE--KLVGILTERDFSR------------ 58

Query: 346 QLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVG 405
                     V  T              L +T    +  +    V  + V+  ++ +V+G
Sbjct: 59  --KSYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVL--DDGKVIG 114

Query: 406 VITLRDVI 413
           ++++ D++
Sbjct: 115 LLSIGDLV 122

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 55.7 bits (133), Expect = 4e-10
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 11/136 (8%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 341
            M+     T+     + +A   M+  +I  +P+V+   KK++G VS RD+          
Sbjct: 7   MMTRH-PHTLLRTHTLNDAKHLMEALDIRHVPIVD-ANKKLLGIVSQRDLLAAQESSLQR 64

Query: 342 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 401
           S        +     V             +   ++ L      +    +  + VV   + 
Sbjct: 65  SAQGDSLAFETPLFEVMH-------TDVTSVAPQAGLKESAIYMQKHKIGCLPVV--AKD 115

Query: 402 EVVGVITLRDVISCFI 417
            +VG+IT  D ++  I
Sbjct: 116 VLVGIITDSDFVTIAI 131

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 20/140 (14%), Positives = 50/140 (35%), Gaps = 10/140 (7%)

Query: 198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 257
            V  ++          +    ++     L+    +R+VPI++     +   ++Q  ++  
Sbjct: 3   KVEDMMTR----HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAA 57

Query: 258 LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG 317
            E                 +  L  +   +V ++     + E+   M+ + IG +PVV  
Sbjct: 58  QESSL---QRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK 114

Query: 318 QQKKIVGNVSIRDIRHLLLK 337
               +VG ++  D   + + 
Sbjct: 115 --DVLVGIITDSDFVTIAIN 132

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 19/158 (12%), Positives = 49/158 (31%), Gaps = 11/158 (6%)

Query: 264 RDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIV 323
           ++    I S+   D+      S  +I       +  +   +  NNI   P+ + +  K  
Sbjct: 11  KEIQAFIRSRTSYDVLPT---SFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFA 67

Query: 324 GNVSIRDIRHLLLK----PELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLG 379
           G +++ D  +++              ++     +                I      +L 
Sbjct: 68  GLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLM 127

Query: 380 SVIHSLASKSVHRIYVV----AGEEAEVVGVITLRDVI 413
               +++     RI ++          +V V+T   ++
Sbjct: 128 DACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL 165

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 53.4 bits (127), Expect = 3e-09
 Identities = 19/131 (14%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 342
           +S      ++ +  I E   R+ ++ +     V  +  K+VG + +  +  +        
Sbjct: 10  ISLK-PTVVEEDTPIEEIVDRILEDPVTRTVYVA-RDNKLVGMIPVMHLLKVSGFHFFGF 67

Query: 343 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 402
             ++  +R  M   +     S  +  P+   +++ L   +  +   ++  + VV  E+ E
Sbjct: 68  IPKEELIRSSMKR-LIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVV-DEKGE 125

Query: 403 VVGVITLRDVI 413
           +VG +   +++
Sbjct: 126 IVGDLNSLEIL 136

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 53.5 bits (127), Expect = 3e-09
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 18/152 (11%)

Query: 281 PFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 340
           P+     V  +     +  A K +  +N   +PVV+ +   +   V   D+        +
Sbjct: 8   PYYQRY-VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVG-IVDETDLLRDSEIVRI 65

Query: 341 FSNFRQLTVRDFM--------------NAVVPTTPDSGKVNP-PITCKLESTLGSVIHSL 385
             +       +                   +P  P +  +    I      T+  V   +
Sbjct: 66  MKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKM 125

Query: 386 ASKSVHRIYVVAGEEAEVVGVITLRDVISCFI 417
           A  S+ ++ V+   E +++G+I   D++   +
Sbjct: 126 AKYSIEQLPVI-RGEGDLIGLIRDFDLLKVLV 156

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 52.1 bits (124), Expect = 4e-09
 Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 20/133 (15%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVE--GQQKKIVGNVSIRDIRHLLLKPEL 340
             +D  + +   + + + F+    +   GIP+ +      ++VG +S RDI  L  +   
Sbjct: 2   FITD-PVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE--- 57

Query: 341 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 400
                                   K    +      TL      L      ++ +V  E 
Sbjct: 58  -------------EHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIV-NEN 103

Query: 401 AEVVGVITLRDVI 413
            E+V +I   D+ 
Sbjct: 104 DELVAIIARTDLK 116

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 52.3 bits (124), Expect = 9e-09
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 14/142 (9%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 342
           M  D V +I S     +    ++   +   P V+      +     R     LL+  + +
Sbjct: 17  MVRD-VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISA 75

Query: 343 NFRQLTVRDFMNAVVPTTPDSGKVN-----------PPITCKLESTLGSVIHSLASKSVH 391
             RQ          +       K              P      ++L       +   + 
Sbjct: 76  YRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLD 135

Query: 392 RIYVVAGEEAEVVGVITLRDVI 413
           R YV      ++VGV+ L ++ 
Sbjct: 136 RAYVT--SMGKLVGVVALAEIQ 155

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 18/138 (13%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPV----VEGQQKKIVGNVSIRDIRHLLLKP 338
           M  +    +   + +  AFK++ +  IG I V    +EG         ++          
Sbjct: 7   MIKN-PPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSCSQ 65

Query: 339 ELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAG 398
               +     + D+M      TP+   V             + I+ + +++   + VV  
Sbjct: 66  GDLYHISTTPIIDYM------TPNPVTVYNTSDEF------TAINIMVTRNFGSLPVV-D 112

Query: 399 EEAEVVGVITLRDVISCF 416
              + VG++T R+ +  +
Sbjct: 113 INDKPVGIVTEREFLLLY 130

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 12/136 (8%)

Query: 288 VITIQSNELILEAFKRMKDNNIGGIPVV-EGQQKKIVGNVSIRDIRHLLLKPELFSNFRQ 346
            +  Q +  + +    + +    G PVV   + +++VG V  RD+   +       +   
Sbjct: 19  TVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVV 78

Query: 347 LTVRDFMNAVVPTTPDSGKVN---------PPITCKLESTLGSVIHSLASKSVHRIYVVA 397
            T   +     P  P                P T    + +  V+       + +  V  
Sbjct: 79  STSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVT- 137

Query: 398 GEEAEVVGVITLRDVI 413
                ++G+IT +DV+
Sbjct: 138 -HNGRLLGIITKKDVL 152

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 18/152 (11%)

Query: 196 STTVRSIIKSYRWAPFLPVATDDSML--SVLLLLSKYRLRNVPII-EPGTPDIKNYITQS 252
            T    ++K  R  P L V T DSM    V  ++S+      P++    +  +  ++ + 
Sbjct: 2   KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRR 61

Query: 253 AVVQ-GLEGCKGRDWFDIIASQPISDLGLPFMSSD------------EVITIQSNELILE 299
            ++       K +D     +    ++   P                    T+     +  
Sbjct: 62  DLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEI 121

Query: 300 AFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
                +   +    V      +++G ++ +D+
Sbjct: 122 VVDIFRKLGLRQCLVTHN--GRLLGIITKKDV 151

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.2 bits (119), Expect = 3e-08
 Identities = 25/142 (17%), Positives = 53/142 (37%), Gaps = 23/142 (16%)

Query: 272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDI 331
             PI       M+   ++ ++ +  + EA + M + ++G + V           V     
Sbjct: 4   KAPIKVY----MTKK-LLGVKPSTSVQEASRLMMEFDVGSLVV----INDDGNVVGFFTK 54

Query: 332 RHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 391
             ++ +  +      + V   M                IT  + + LG V+  +A   + 
Sbjct: 55  SDIIRRVIVPGLPYDIPVERIMT------------RNLITANVNTPLGEVLRKMAEHRIK 102

Query: 392 RIYVVAGEEAEVVGVITLRDVI 413
            I +   EE ++VG+ TL D++
Sbjct: 103 HILIE--EEGKIVGIFTLSDLL 122

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 18/131 (13%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 342
           M++  V  +  +E +  A + M++++IG +P+     +          +   L      +
Sbjct: 7   MNAG-VTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPN 65

Query: 343 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 402
                 +       V       +               +++ +    V R+ V+   E  
Sbjct: 66  TATAGELARDSIYYVDANASIQE---------------MLNVMEEHQVRRVPVI--SEHR 108

Query: 403 VVGVITLRDVI 413
           +VG++T  D+ 
Sbjct: 109 LVGIVTEADIA 119

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRH 333
           P+       MS+  V TI     + +A K M       +PV++   K +     +  I+ 
Sbjct: 3   PVKVF----MSTK-VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQ 57

Query: 334 LLLKPELFSNFRQ--LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVH 391
           L    +           V+D M                +T    +++      +  K + 
Sbjct: 58  LAKAVDKLDPDYFYGKVVKDVMV------------TNLVTIDELASVNRAAAEMIVKRIG 105

Query: 392 RIYVVAGEEAEVVGVITLRDVI 413
            + ++  +   + G+IT RD++
Sbjct: 106 SLLILNKDN-TIRGIITERDLL 126

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.1 bits (108), Expect = 6e-07
 Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 24/138 (17%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 341
           +++ D    ++ +  + E   RM+        V + +                       
Sbjct: 6   WVTQD-FPMVEESATVRECLHRMRQYQTNECIVKDREGHFR------------------- 45

Query: 342 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 401
                +   D ++  + ++  +    P      E  +   +          + VV  EE 
Sbjct: 46  ---GVVNKEDLLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVV-DEEM 101

Query: 402 EVVGVITLRDVISCFIFE 419
            + G ++L D +   I  
Sbjct: 102 RLKGAVSLHDFLEALIEA 119

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 45.6 bits (107), Expect = 8e-07
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 20/131 (15%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 342
           M +D V TI     + +  +   +N  G   VV+   +  +                   
Sbjct: 6   MVTD-VDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEV 64

Query: 343 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 402
              ++  RD +      T                        +    V R+ V   E+ E
Sbjct: 65  KVWEVMERDLVTISPRATIK-----------------EAAEKMVKNVVWRLLVE--EDDE 105

Query: 403 VVGVITLRDVI 413
           ++GVI+  D++
Sbjct: 106 IIGVISATDIL 116

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 21/155 (13%), Positives = 58/155 (37%), Gaps = 16/155 (10%)

Query: 198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQG 257
            V  I+ S     F  V  + ++   + ++++  L  + + +    D+     +S + + 
Sbjct: 4   RVEKIMNS----NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRF 59

Query: 258 LEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG 317
           +   K  D   I             +    +  ++S+  + +    + +N +    VV+ 
Sbjct: 60  IPRNKKPDEVPI-----------RLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD 108

Query: 318 QQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDF 352
              ++VG V++ D+   L +  +         +D+
Sbjct: 109 P-GRVVGIVTLTDLSRYLSRASITDILLSHRTKDY 142

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 342
           M+S+   T+  N  + +A K M +N++ G+ V +      VG +S R I    +      
Sbjct: 9   MNSN-FKTVNWNTTVFDAVKIMNENHLYGLVVKD-DNGNDVGLLSERSIIKRFIPRNKKP 66

Query: 343 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 402
           +   + +          +    K               V   L+   + R  VV  +   
Sbjct: 67  DEVPIRLVMRKPIPKVKSDYDVK--------------DVAAYLSENGLERCAVV-DDPGR 111

Query: 403 VVGVITLRDVI 413
           VVG++TL D+ 
Sbjct: 112 VVGIVTLTDLS 122

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 24/135 (17%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS 342
           M+ +  +TI        A +  K   +   PVV  + K                      
Sbjct: 7   MTQN-PVTITLPATRNYALELFKKYKVRSFPVVNKEGK---------------------- 43

Query: 343 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAE 402
               ++V+  +                   K   TL      +      R+ VV   + +
Sbjct: 44  LVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVV-DSKGK 102

Query: 403 VVGVITLRDVISCFI 417
            VG++T+ D+I  + 
Sbjct: 103 PVGILTVGDIIRRYF 117

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 20/132 (15%)

Query: 282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELF 341
           +M +  VI++  +  + +  K M + NIG + VV+G +   VG ++ RDI   +      
Sbjct: 9   YMKTQ-VISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK--PVGIITERDIVKAI------ 59

Query: 342 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 401
                          + T  +       IT + +S +   +  +   ++  + VV  ++ 
Sbjct: 60  ----------GKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVV-DDKG 108

Query: 402 EVVGVITLRDVI 413
            + G+I++RD+ 
Sbjct: 109 NLKGIISIRDIT 120

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 22/132 (16%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDNNIGGIPV-VEGQQKKIVGNVSIRDIRHLLLKPELF 341
           +  D    +     + EA + M+   I G+P+      +K+VG ++ RD+R +       
Sbjct: 3   VIID-PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPI 61

Query: 342 SNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEA 401
           S                        +  +      T       +  +       +     
Sbjct: 62  SEHMT--------------------SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG 101

Query: 402 EVVGVITLRDVI 413
            + G+IT++D+ 
Sbjct: 102 RLSGLITIKDIE 113

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 15/133 (11%)

Query: 282 FM-SSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL 340
           FM  +D+V  +Q    +  A   +       IPV++    ++ G +    I + +   E 
Sbjct: 7   FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PSYRLHGLIGTNMIMNSIFGLER 65

Query: 341 FSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE 400
               +   +      +                 +                +    V  +E
Sbjct: 66  IEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVIN-------------NGFVCVENDE 112

Query: 401 AEVVGVITLRDVI 413
               G+ T R V+
Sbjct: 113 QVFEGIFTRRVVL 125

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 22/139 (15%)

Query: 275 ISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL 334
            S+L    +     +++     I E    +  N +G   +      K    V        
Sbjct: 3   TSEL----LKRP-PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILR 57

Query: 335 LLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIY 394
            +   L  +   + + +    V+ T P                            +  + 
Sbjct: 58  AVAQRLDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHN----------------IRHVV 101

Query: 395 VVAGEEAEVVGVITLRDVI 413
           VV  +  E+VGV+++RD+ 
Sbjct: 102 VV-NKNGELVGVLSIRDLC 119

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 29/136 (21%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 337
           M+++  ++I +N+ +  A   +K+       I  + VV+ Q+  +VG +S+RD+      
Sbjct: 7   MTTE-FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD-QENHLVGVISLRDLIV---- 60

Query: 338 PELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVA 397
                N     + D +N               I+  +      V  ++       + V  
Sbjct: 61  -----NDDDTLIADILN------------ERVISVHVGDDQEDVAQTIRDYDFLAVPVT- 102

Query: 398 GEEAEVVGVITLRDVI 413
             +  ++G++T+ D+I
Sbjct: 103 DYDDHLLGIVTVDDII 118

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 29/136 (21%)

Query: 283 MSSDEVITIQSNELILEAFKRMKDN-----NIGGIPVVEGQQKKIVGNVSIRDIRHLLLK 337
           M+ +  + ++    + E  + ++        I  I VV+ ++ ++ G +S+RD+      
Sbjct: 7   MTPE-YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD-EKGRLKGVLSLRDLIV---- 60

Query: 338 PELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVA 397
                   +  V + MN               +  + ++    V   +A      + VV 
Sbjct: 61  -----ADPRTRVAEIMN------------PKVVYVRTDTDQEEVARLMADYDFTVLPVV- 102

Query: 398 GEEAEVVGVITLRDVI 413
            EE  +VG++T+ DV+
Sbjct: 103 DEEGRLVGIVTVDDVL 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	438
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.81
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.8
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.8
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.8
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.8
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.79
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.79
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.78
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.78
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.77
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.77
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.77
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.77
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.77
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.76
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.76
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.75
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.75
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.75
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.75
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.75
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.75
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.74
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.74
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.74
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.73
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.73
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.73
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.73
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.72
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.71
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.71
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.71
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.69
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.68
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.68
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.68
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.67
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.66
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.66
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.66
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.65
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.65
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.65
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.65
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.65
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.64
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.64
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.61
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.6
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.59
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.58

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.81  E-value=1.8e-19  Score=149.47  Aligned_cols=124  Identities=23%  Similarity=0.388  Sum_probs=111.9

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      .+..|++    +|++ +++++.+++++.+|+++|.+++++++||++  +++++|++|.+|+++.+.+...    ...++.
T Consensus         2 ~~~~V~d----~m~~-~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d--~~~~~Givt~~dl~~~~~~~~~----~~~~v~   70 (127)
T d2ef7a1           2 EEEIVKE----YMKT-QVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKS----LETKAE   70 (127)
T ss_dssp             CCCBGGG----TSBC-SCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTCC----TTCBGG
T ss_pred             CccCHHH----hCCC-CCeEECCcCcHHHHHHHHHHcCCceEEeec--ccchhhhcchhHHHHHHHhhcc----ccchhh
Confidence            3457888    8987 899999999999999999999999999998  6899999999999998875332    356899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      ++|.+            +++++++++++.+|++.|.+++++++||+|++| +++|+||..||++++..
T Consensus        71 ~~~~~------------~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          71 EFMTA------------SLITIREDSPITGALALMRQFNIRHLPVVDDKG-NLKGIISIRDITRAIDD  125 (127)
T ss_dssp             GTSEE------------CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHH
T ss_pred             hhhhh------------hccccccccchhHHHHHHHHcCceEEEEEeCCC-eEEEEEEHHHHHHHHHh
Confidence            99986            889999999999999999999999999999998 99999999999998864

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=9.2e-20  Score=150.37  Aligned_cols=121  Identities=18%  Similarity=0.336  Sum_probs=105.9

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  353 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m  353 (438)
                      ++++    +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|++..+....  ......+++++|
T Consensus         2 t~~d----iM~~-~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~~~Giit~~Di~~~~~~~~--~~~~~~~v~~im   73 (123)
T d1y5ha3           2 TARD----IMNA-GVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAG--LDPNTATAGELA   73 (123)
T ss_dssp             CHHH----HSEE-TCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGT--CCTTTSBHHHHH
T ss_pred             CHHH----hcCC-CCcEECCcCcHHHHHHHHHHcCCCceEEEec-cchhhhhhhhhhHhhhhhhcC--CCcccceEEEEe
Confidence            5667    7887 8999999999999999999999999999997 799999999999977543222  123456799999


Q ss_pred             cccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          354 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                      .+            +++++++++++.+|++.|.+++++++||+|+ | +++|+||.+||++++
T Consensus        74 ~~------------~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~-~-~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          74 RD------------SIYYVDANASIQEMLNVMEEHQVRRVPVISE-H-RLVGIVTEADIARHL  122 (123)
T ss_dssp             TT------------CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-T-EEEEEEEHHHHHHTC
T ss_pred             ec------------cceeeeecchHHHHHHHHHHcCceEEEEEEC-C-EEEEEEEHHHHHhhC
Confidence            85            8899999999999999999999999999985 5 999999999999864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=5.2e-19  Score=149.16  Aligned_cols=137  Identities=18%  Similarity=0.370  Sum_probs=109.1

Q ss_pred             cccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcH
Q 013669          270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTV  349 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v  349 (438)
                      +..+++.++++ ++. ++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|++..+......  .....+
T Consensus         3 ~~~~~i~~l~~-~~~-~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vG~it~~Di~~~~~~~~~~--~~~~~~   77 (140)
T d2nyca1           3 FLKIPIGDLNI-ITQ-DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYN--DLSLSV   77 (140)
T ss_dssp             GGGSBGGGSSC-CBC-SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC------CCSBH
T ss_pred             cccCcHHHhCC-ccC-CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCeEcceehhhHHHHHHhhcccc--ccccch
Confidence            35678888765 344 48999999999999999999999999999998 88999999999999988654322  223345


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .+.+....      ....++++|++++++.+++++|.+++++++||||++| +++|+||.+||+++++.
T Consensus        78 ~~~~~~~~------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~-~l~GiIt~~Dii~~l~~  139 (140)
T d2nyca1          78 GEALMRRS------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG-RLVGVLTLSDILKYILL  139 (140)
T ss_dssp             HHHHHHCC------------CEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHH
T ss_pred             hhhhhhhh------hcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCC-eEEEEEEHHHHHHHHhc
Confidence            55554211      0123778999999999999999999999999999998 99999999999999863

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=8e-20  Score=157.05  Aligned_cols=128  Identities=20%  Similarity=0.254  Sum_probs=106.9

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCC------------
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKP------------  338 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~------------  338 (438)
                      .+.++.+    +|++ +++++.+++++.+|+++|.+++++++||+|+ +|+++|++|..|++..+...            
T Consensus         2 ~~~~v~~----~m~r-~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~   75 (156)
T d2yzqa1           2 KGVEIEP----YYQR-YVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASS   75 (156)
T ss_dssp             GGCBSTT----TSBS-CCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC-----------
T ss_pred             CCCCHHH----HhcC-CCeEECCcCcHHHHHHHHHHcCCCEEEEEeC-CCCceeEEeeeechhhhcccccccccccccch
Confidence            3457778    7987 8999999999999999999999999999998 89999999999996543211            


Q ss_pred             ---------------ccccccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeE
Q 013669          339 ---------------ELFSNFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEV  403 (438)
Q Consensus       339 ---------------~~~~~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~l  403 (438)
                                     .........++.++|+.            ++++|.+++++.++++.|.+++++++||+|++| ++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~------------~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g-~l  142 (156)
T d2yzqa1          76 EEEWILESHPTLLFEKFELQLPNKPVAEIMTR------------DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEG-DL  142 (156)
T ss_dssp             ---------------------CCCBGGGTCBS------------SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTT-EE
T ss_pred             hhhhhhhhhhhhhHHHhhhcccCCEeehhccc------------CceEECcccccHHHHHHHHHcCeeEEEEEeCCC-EE
Confidence                           00012233466777764            889999999999999999999999999999998 99


Q ss_pred             EEEEeHHHHHHHhh
Q 013669          404 VGVITLRDVISCFI  417 (438)
Q Consensus       404 vGvIT~~DIl~~l~  417 (438)
                      +||||++||+++++
T Consensus       143 vGivt~~Dil~~l~  156 (156)
T d2yzqa1         143 IGLIRDFDLLKVLV  156 (156)
T ss_dssp             EEEEEHHHHGGGGC
T ss_pred             EEEEEHHHHHHHhC
Confidence            99999999999874

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.80  E-value=9.4e-19  Score=149.88  Aligned_cols=137  Identities=18%  Similarity=0.411  Sum_probs=113.3

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  353 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m  353 (438)
                      |++++.++  +.++++++.+++++.+|++.|.+++++++||+|+ +++++|+++.+|++..+.....  .....++.++|
T Consensus         2 pl~~~~ig--~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-~~~~vG~it~~Dl~~~~~~~~~--~~~~~~v~~~~   76 (153)
T d2ooxe2           2 PLNQMTIG--TWSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDY--SNLDLSVGEAL   76 (153)
T ss_dssp             BGGGTCCS--BCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-GGBEEEEEEHHHHHHHHGGGCG--GGGGSBHHHHH
T ss_pred             CHHHcCCC--CCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-cceEEEEEEeeeeeehhccccc--cccccchhhhe
Confidence            56665443  2347999999999999999999999999999997 8999999999999988764322  12356899998


Q ss_pred             cccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCCCC
Q 013669          354 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEPPN  422 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~~~  422 (438)
                      ....      ....+++++.+++++.++++.|.+++++++||||++| +++|+||++||++++..++..
T Consensus        77 ~~~~------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~-~lvGivT~~Dil~~~~~~~~~  138 (153)
T d2ooxe2          77 LKRP------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENL-KLEGILSLADILNYIIYDKTT  138 (153)
T ss_dssp             HTSC------CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTC-BEEEEEEHHHHHHHHHSCTTC
T ss_pred             eeee------cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCC-EEEEEEEHHHHHHHHHcCccc
Confidence            6421      1224778999999999999999999999999999988 999999999999999865543

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=3.4e-19  Score=150.72  Aligned_cols=124  Identities=24%  Similarity=0.328  Sum_probs=110.5

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  353 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m  353 (438)
                      ++++    +|++ ++.++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|++..+....  ......++.++|
T Consensus         4 ~v~d----im~~-~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~-~~~~~Giit~~di~~~~~~~~--~~~~~~~v~~im   75 (142)
T d1pvma4           4 RVEK----IMNS-NFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRN--KKPDEVPIRLVM   75 (142)
T ss_dssp             BGGG----TSBT-TCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGC--CCGGGSBGGGTS
T ss_pred             EHHH----hCCC-CCcEECCcCcHHHHHHHHHHCCCceEeeecc-CCcccceEEeechhhhhhhhc--cccccccccccc
Confidence            5778    7987 8999999999999999999999999999997 799999999999987754322  133467899999


Q ss_pred             cccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          354 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      ..            +++++++++++.+|+++|.+++++++||+|++| +++|+||..||++++..
T Consensus        76 ~~------------~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g-~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          76 RK------------PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPG-RVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             BS------------SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTC-CEEEEEEHHHHTTTSCH
T ss_pred             cc------------ccccccchhhHHHHHHHHHHcCCcEEEEEecCC-EEEEEEEHHHHHHHHhh
Confidence            85            899999999999999999999999999999998 99999999999997754

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.79  E-value=1.2e-18  Score=145.42  Aligned_cols=125  Identities=23%  Similarity=0.436  Sum_probs=111.4

Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHH
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRD  351 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~  351 (438)
                      ..||++    +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|+||..|++..+.....   ....++.+
T Consensus         4 ~~pV~~----im~~-~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~~~---~~~~~v~~   74 (132)
T d2yzia1           4 KAPIKV----YMTK-KLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPGL---PYDIPVER   74 (132)
T ss_dssp             TSBGGG----TCBC-CCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCC---CTTSBGGG
T ss_pred             CCcHHH----HcCC-CCeEECCcCcHHHHHHHHHHcCCcEEEEecc-cceeeeeeeHHHHHHHHhhccC---ccceeEee
Confidence            468999    8987 8999999999999999999999999999998 8899999999999987765433   24568999


Q ss_pred             HhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          352 FMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       352 ~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      +|.+            ++.++++++++.++++.|.+++++++||++ +| +++|+||.+||++++..+
T Consensus        75 im~~------------~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~-~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          75 IMTR------------NLITANVNTPLGEVLRKMAEHRIKHILIEE-EG-KIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             TCBC------------SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHCC
T ss_pred             cccc------------cccccCcchHHHHHHHHHHHcCCCEEEEEE-CC-EEEEEEEHHHHHHHHHHH
Confidence            9985            899999999999999999999999999875 45 999999999999998753

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.78  E-value=7.9e-19  Score=147.87  Aligned_cols=125  Identities=22%  Similarity=0.233  Sum_probs=108.4

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcc-----ccccccCc
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPEL-----FSNFRQLT  348 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~-----~~~~~~~~  348 (438)
                      ++++    +|++ +++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+|++..+.....     .......+
T Consensus         3 ~v~d----iM~~-~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~   76 (139)
T d2o16a3           3 KVED----MMTR-HPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETP   76 (139)
T ss_dssp             BGGG----TSEE-SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC---------CCCB
T ss_pred             EHHH----hCcC-CCeEECCcCCHHHHHHHHHHcCCCeeeeecc-cccccccccHHHHHHHHHhhhhhhhcccccccccc
Confidence            5677    7987 8999999999999999999999999999998 8999999999999887743110     01233568


Q ss_pred             HHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          349 VRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       349 v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      +.++|.+            ++.+|++++++.+|+++|.+++++++||+|+ | +++|+||.+||++++..
T Consensus        77 v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~-~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          77 LFEVMHT------------DVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-D-VLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             HHHHSCS------------CEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-T-EEEEEECHHHHHHHHHH
T ss_pred             hhHhhcc------------ccccccccchHHHHHHHHHHcCceEEEEEEC-C-EEEEEEEHHHHHHHHHH
Confidence            9999985            8999999999999999999999999999995 5 99999999999998864

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.78  E-value=6.4e-19  Score=146.10  Aligned_cols=114  Identities=20%  Similarity=0.397  Sum_probs=101.0

Q ss_pred             CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669          286 DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  365 (438)
Q Consensus       286 ~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  365 (438)
                      ++++++.+++++.+|+++|.+++++++||++  +++++|++|.+|+++.+....  ......++.++|+.          
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~--~~~~vGiit~~Di~~~~~~~~--~~~~~~~v~~im~~----------   78 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLD--KPVKDTQVKEIMTR----------   78 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGSS--SCGGGSBGGGTSBC----------
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEccchhhhhhhhc--ccccceeEeeeccc----------
Confidence            3789999999999999999999999999998  689999999999987654222  12345689999985          


Q ss_pred             CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                        ++++|.+++++.+|+++|.+++++++||+| +| +++|+||.+||++.++
T Consensus        79 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~-~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          79 --QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DG-KVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             --SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHH
T ss_pred             --eeEEeccCccHHHHHHHHHHCCCcEEEEEE-CC-EEEEEEEHHHHHHHHh
Confidence              899999999999999999999999999998 46 9999999999999875

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.5e-18  Score=147.13  Aligned_cols=122  Identities=13%  Similarity=0.232  Sum_probs=105.1

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc------------cccccccCcH
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE------------LFSNFRQLTV  349 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~------------~~~~~~~~~v  349 (438)
                      +|+. +++++.+++++.+|++.|.+++++++||+|+ +++++|+||.+|++.++....            ....+...++
T Consensus         9 ~m~~-~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (145)
T d1o50a3           9 LISL-KPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-DNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNA   86 (145)
T ss_dssp             SSCC-CCEEECTTCBHHHHHHHHHHSTTCCEEEEEE-TTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSSCBH
T ss_pred             hCCC-CCEEECCcCcHHHHHHHHHHcCCceEEEecc-CcceeeeeccchhhhhhhcccccccchhHHHHhhhhhccccCH
Confidence            6776 8999999999999999999999999999997 899999999999988764211            1112334556


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                      .++|.             +++++.+++++.+|+++|.+++++++||||++| +++|+||.+||++++..+
T Consensus        87 ~~~~~-------------~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g-~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          87 SEIML-------------DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKG-EIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             HHHCB-------------CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHHS
T ss_pred             HHHcC-------------CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCC-eEEEEEEHHHHHHHHHhc
Confidence            66665             678999999999999999999999999999988 999999999999999864

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=4.6e-19  Score=146.13  Aligned_cols=122  Identities=19%  Similarity=0.316  Sum_probs=105.6

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      ++++|+|.    ++++++.+++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+.... ..    .....++
T Consensus         1 tt~~diM~----~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~-~~----~~~~~v~   70 (123)
T d1y5ha3           1 TTARDIMN----AGVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAG-LD----PNTATAG   70 (123)
T ss_dssp             CCHHHHSE----ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGT-CC----TTTSBHH
T ss_pred             CCHHHhcC----CCCcEECCcCcHHHHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcC-CC----cccceEE
Confidence            57999998    779999999999999999999999999999987 89999999999987554321 11    1344567


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  335 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l  335 (438)
                      +    +|++ +++++.+++++.++++.|.+++++++||+|  +++++|+||.+||++.+
T Consensus        71 ~----im~~-~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          71 E----LARD-SIYYVDANASIQEMLNVMEEHQVRRVPVIS--EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             H----HHTT-CCCCEETTCCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHTC
T ss_pred             E----Eeec-cceeeeecchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHhhC
Confidence            7    6876 899999999999999999999999999998  58999999999998753

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1.6e-18  Score=147.01  Aligned_cols=138  Identities=19%  Similarity=0.351  Sum_probs=113.7

Q ss_pred             ccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHH
Q 013669          271 ASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVR  350 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~  350 (438)
                      ..++++++.++  +.++++++.+++++.+|+++|.+++++++||+|+ +|+++|++|..|++..+......  ....++.
T Consensus         7 ~~~~l~~l~i~--~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~-~~~~~Gvit~~di~~~l~~~~~~--~~~~~v~   81 (145)
T d2v8qe1           7 MSKSLEELQIG--TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTYN--NLDVSVT   81 (145)
T ss_dssp             GGSBHHHHTCS--BCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCCC--CCSSBHH
T ss_pred             hhCCHHHHcCC--CCCCceEEcCcCcHHHHHHHHHHcCCCccccccc-CCceEEEEEcchhhhhhhccccc--chhhhhh
Confidence            45678887653  2237999999999999999999999999999997 89999999999998887653221  2345676


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  420 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~  420 (438)
                      +.+.....      ...+++++.+++++.+++++|.+++++++||+|++| +++|+||.+||+++++.++
T Consensus        82 ~~~~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g-~l~GiVt~~dii~~lv~~~  144 (145)
T d2v8qe1          82 KALQHRSH------YFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALVLTG  144 (145)
T ss_dssp             HHGGGCCS------CCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTS-BEEEEEEHHHHHHHHHSSC
T ss_pred             hccchhhh------ccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCC-EEEEEEEHHHHHHHHHhcC
Confidence            66653111      224788999999999999999999999999999988 9999999999999999764

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=7.4e-19  Score=148.26  Aligned_cols=126  Identities=23%  Similarity=0.332  Sum_probs=111.5

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc---cccccccCcHH
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE---LFSNFRQLTVR  350 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~---~~~~~~~~~v~  350 (438)
                      ||++    +|++ +++++++++++.+|+++|.+++++++||++. +++++|+++..|++..+....   ........++.
T Consensus         3 ~V~~----iMt~-~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~-~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~   76 (141)
T d3ddja1           3 PVKV----FMST-KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVK   76 (141)
T ss_dssp             BHHH----HSBC-SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHH
T ss_pred             eeHH----hCcC-CCeEEcCcCcHHHHHHHHHHcCCCeeecccc-cCccccccccccchhhhhccccccccccccCCCHH
Confidence            6778    7987 8999999999999999999999999999998 899999999999988764311   11123467899


Q ss_pred             HHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          351 DFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       351 ~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      ++|..            +++++.+++++.++++.|.+++++++||+|++| +++|+||.+||++++..
T Consensus        77 ~im~~------------~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~-~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          77 DVMVT------------NLVTIDELASVNRAAAEMIVKRIGSLLILNKDN-TIRGIITERDLLIALHH  131 (141)
T ss_dssp             HHSBC------------CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHHHH
T ss_pred             HHhCc------------ccccccccchhhHHHHHHHHcCCCEEEEEccCC-EEEEEEEHHHHHHHHHH
Confidence            99985            899999999999999999999999999999988 99999999999999875

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=1.5e-18  Score=144.87  Aligned_cols=126  Identities=18%  Similarity=0.243  Sum_probs=108.7

Q ss_pred             CCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc--cccccccCcH
Q 013669          273 QPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE--LFSNFRQLTV  349 (438)
Q Consensus       273 ~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~--~~~~~~~~~v  349 (438)
                      .++++    +|.+ ++++++.+++++.+|+++|.+++++++||+|+ +|+++|++|.+|++..+....  .+......++
T Consensus         2 ~tv~~----~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~-~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v   76 (132)
T d1yava3           2 ATVGQ----FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLERIEFEKLDQITV   76 (132)
T ss_dssp             CBHHH----HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBH
T ss_pred             CCHHH----ccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeec-ccccccEEEcchhHHHhhccccccccccccccc
Confidence            45667    5633 37999999999999999999999999999997 799999999999999986532  2234556789


Q ss_pred             HHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          350 RDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       350 ~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .++|.+            ++.++++++++.+++++|.+++  .+||+|++| +++|+||.+||++++..
T Consensus        77 ~~~m~~------------~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~-~~~Givt~~dil~~l~~  130 (132)
T d1yava3          77 EEVMLT------------DIPRLHINDPIMKGFGMVINNG--FVCVENDEQ-VFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             HHHSBC------------SCCEEETTSBHHHHHHHTTTCS--EEEEECTTC-BEEEEEEHHHHHHHHHH
T ss_pred             cccccc------------cccccccchhHHHHHHHHHhCC--EEEEEccCC-EEEEEEEHHHHHHHHHh
Confidence            999985            8899999999999999998764  599999998 99999999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=2.5e-18  Score=140.98  Aligned_cols=115  Identities=21%  Similarity=0.333  Sum_probs=103.7

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  361 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  361 (438)
                      +|++ +++++.+++++.+|++.|.+++++++||++  +|+++|++|.+||++.+.....   +...++.++|++      
T Consensus         5 iM~~-~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~--~~~~~Gvit~~Di~~~l~~~~~---~~~~~v~~~m~~------   72 (120)
T d1pbja3           5 VMVT-DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDD---LAEVKVWEVMER------   72 (120)
T ss_dssp             HCBC-SCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCC---TTTSBHHHHCBC------
T ss_pred             hCCC-CCeEECCcCcHHHHHHHHHHcCceEEEEEe--CCcEEEEEEeeecccccccccc---ccceeEeeeccc------
Confidence            7887 899999999999999999999999999998  6899999999999988765332   356789999985      


Q ss_pred             CCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 013669          362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCF  416 (438)
Q Consensus       362 ~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l  416 (438)
                            ++.++++++++.+|++.|.+++++++||++ +| +++|+||.+||+++.
T Consensus        73 ------~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~-~l~Givt~~Dil~A~  119 (120)
T d1pbja3          73 ------DLVTISPRATIKEAAEKMVKNVVWRLLVEE-DD-EIIGVISATDILRAK  119 (120)
T ss_dssp             ------GGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHH
T ss_pred             ------ccccccchhHHHHHHHHHHHcCCeEEEEEE-CC-EEEEEEEHHHHHhcC
Confidence                  889999999999999999999999999986 46 999999999999874

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.76  E-value=4.6e-18  Score=140.78  Aligned_cols=122  Identities=23%  Similarity=0.391  Sum_probs=110.0

Q ss_pred             CCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCc
Q 013669          196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPI  275 (438)
Q Consensus       196 ~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v  275 (438)
                      ...|+++|.    .+++++++++++.+|+++|.+++++++||+|+  ++++|++|..|+++.+.+...       ...++
T Consensus         3 ~~~V~d~m~----~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~-------~~~~v   69 (127)
T d2ef7a1           3 EEIVKEYMK----TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKS-------LETKA   69 (127)
T ss_dssp             CCBGGGTSB----CSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCC-------TTCBG
T ss_pred             ccCHHHhCC----CCCeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhcc-------ccchh
Confidence            356899998    78999999999999999999999999999986  689999999999998876532       34577


Q ss_pred             cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .+    +|.+ ++.++.+++++.++++.|.+++++++||+|+ +|+++|+||.+||++.+.
T Consensus        70 ~~----~~~~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          70 EE----FMTA-SLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAID  124 (127)
T ss_dssp             GG----TSEE-CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             hh----hhhh-hccccccccchhHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHH
Confidence            88    7876 8899999999999999999999999999997 899999999999999875

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=1.2e-17  Score=139.32  Aligned_cols=123  Identities=18%  Similarity=0.299  Sum_probs=110.1

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      .+|+++|.    .+++++++++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+.....      ....+++
T Consensus         5 ~pV~~im~----~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~------~~~~~v~   73 (132)
T d2yzia1           5 APIKVYMT----KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGL------PYDIPVE   73 (132)
T ss_dssp             SBGGGTCB----CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCC------CTTSBGG
T ss_pred             CcHHHHcC----CCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccC------ccceeEe
Confidence            36999998    789999999999999999999999999999987 899999999999988765421      1456889


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      +    +|.+ ++.++.+++++.++++.|.+++++++||++  +|+++|+||.+|+++.+.+
T Consensus        74 ~----im~~-~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~--~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          74 R----IMTR-NLITANVNTPLGEVLRKMAEHRIKHILIEE--EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             G----TCBC-SCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             e----cccc-cccccCcchHHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            9    7887 899999999999999999999999999887  6999999999999998753

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=2.9e-18  Score=140.84  Aligned_cols=119  Identities=15%  Similarity=0.228  Sum_probs=107.1

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHh
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFM  353 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m  353 (438)
                      .+++    +|++ ++.++.+++++.+|+++|.+++.+++||+|+ +|+++|+++.+|++...         ...++.++|
T Consensus         2 ~v~~----~m~~-~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-~~~~~Gii~~~dl~~~~---------~~~~v~~~~   66 (121)
T d1vr9a3           2 KVKK----WVTQ-DFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLD---------LDSSVFNKV   66 (121)
T ss_dssp             BGGG----GCBS-CSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSC---------TTSBSGGGC
T ss_pred             Cchh----hhcC-CCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-CceeEEEeehhhhhhhh---------ccccccccc
Confidence            3566    7887 8999999999999999999999999999987 89999999999997541         245788888


Q ss_pred             cccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669          354 NAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  420 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~  420 (438)
                      ..            +++++++++++.+++++|.++++.++||||++| +++|+||..||++++..+.
T Consensus        67 ~~------------~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g-~~~Gvit~~dil~~l~~~l  120 (121)
T d1vr9a3          67 SL------------PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEM-RLKGAVSLHDFLEALIEAL  120 (121)
T ss_dssp             BC------------TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTC-BEEEEEEHHHHHHHHHHSC
T ss_pred             cC------------ccEEECCCCCHHHHHHHHHhcCceeeeeECCCC-eEEEEEEHHHHHHHHHHhc
Confidence            85            889999999999999999999999999999998 9999999999999998753

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=3.9e-19  Score=146.36  Aligned_cols=114  Identities=21%  Similarity=0.270  Sum_probs=86.2

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCC
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTP  361 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~  361 (438)
                      +|++ +++++++++++.+|++.|.+++++++||+|+ +|+++|+||.+|++....         ..++.++|.+      
T Consensus         6 iM~~-~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~G~it~~dl~~~~~---------~~~~~~~~~~------   68 (122)
T d2yzqa2           6 IMTQ-NPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPD---------EEQLAMLVKR------   68 (122)
T ss_dssp             HSEE-SCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC-------------------CCCBS------
T ss_pred             ccCC-CCEEECCcCcHHHHHHHHHHcCCcEEEEEec-cccchhhhhcchhhhhhc---------ccchhhcccc------
Confidence            6877 8999999999999999999999999999998 899999999999976522         3467788875      


Q ss_pred             CCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          362 DSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       362 ~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                            ++++|++++++.+++++|.+++++++||||++| +++|+||.+||++++..+
T Consensus        69 ------~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~-~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          69 ------DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKG-KPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             ------CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHHHTTTT
T ss_pred             ------ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCC-EEEEEEEHHHHHHHHHhH
Confidence                  889999999999999999999999999999998 999999999999988764

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.75  E-value=4.5e-18  Score=143.15  Aligned_cols=127  Identities=17%  Similarity=0.315  Sum_probs=108.9

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCC--cccccccCCc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD--WFDIIASQPI  275 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~--~~~~l~~~~v  275 (438)
                      +|+|+|.    ++++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++++.......  ........++
T Consensus         3 ~v~diM~----~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v   77 (139)
T d2o16a3           3 KVEDMMT----RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL   77 (139)
T ss_dssp             BGGGTSE----ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred             EHHHhCc----CCCeEECCcCCHHHHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence            5899998    679999999999999999999999999999987 89999999999998886532111  1111245678


Q ss_pred             cccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          276 SDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       276 ~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ++    +|++ ++.++++++++.+++++|.+++++++||+|  +|+++|+||.+||++.+.
T Consensus        78 ~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          78 FE----VMHT-DVTSVAPQAGLKESAIYMQKHKIGCLPVVA--KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             HH----HSCS-CEEEBCTTSBHHHHHHHHHHTTCSCEEEEE--TTEEEEEECHHHHHHHHH
T ss_pred             hH----hhcc-ccccccccchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            88    7887 899999999999999999999999999999  589999999999998865

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.75  E-value=9.2e-18  Score=138.96  Aligned_cols=123  Identities=13%  Similarity=0.274  Sum_probs=106.9

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +|+++|.. +.++++++++++++.+|+++|.+++++++||+++  ++++|++|..|+++.+......     ....++++
T Consensus         3 tV~dim~~-k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~-----~~~~~v~~   74 (127)
T d2rc3a1           3 TVKHLLQE-KGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKP-----VKDTQVKE   74 (127)
T ss_dssp             BHHHHHHH-HCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSC-----GGGSBGGG
T ss_pred             cHHHHHcc-CCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhccc-----ccceeEee
Confidence            58888874 2357999999999999999999999999999985  7999999999998876543211     24567888


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  335 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l  335 (438)
                          +|++ ++.++.+++++.++++.|.+++++++||+|  +|+++|+||.+|+++.+
T Consensus        75 ----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          75 ----IMTR-QVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             ----TSBC-SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             ----eccc-eeEEeccCccHHHHHHHHHHCCCcEEEEEE--CCEEEEEEEHHHHHHHH
Confidence                7887 899999999999999999999999999998  68999999999999875

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=2.7e-18  Score=147.27  Aligned_cols=130  Identities=15%  Similarity=0.258  Sum_probs=108.1

Q ss_pred             CCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCC---------
Q 013669          195 KSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRD---------  265 (438)
Q Consensus       195 ~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~---------  265 (438)
                      ++.++.++|.    ++++++.+++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+.......         
T Consensus         2 ~~~~v~~~m~----r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~   76 (156)
T d2yzqa1           2 KGVEIEPYYQ----RYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSE   76 (156)
T ss_dssp             GGCBSTTTSB----SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC------------
T ss_pred             CCCCHHHHhc----CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchh
Confidence            4566889998    889999999999999999999999999999987 89999999999976543211000         


Q ss_pred             ---------------cccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHH
Q 013669          266 ---------------WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRD  330 (438)
Q Consensus       266 ---------------~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~D  330 (438)
                                     ........++.+    +|++ +++++.+++++.++++.|.+++++++||+|+ +|+++|++|.+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~----~m~~-~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~lvGivt~~D  150 (156)
T d2yzqa1          77 EEWILESHPTLLFEKFELQLPNKPVAE----IMTR-DVIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIRDFD  150 (156)
T ss_dssp             --------------------CCCBGGG----TCBS-SCCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEEHHH
T ss_pred             hhhhhhhhhhhhHHHhhhcccCCEeeh----hccc-CceEECcccccHHHHHHHHHcCeeEEEEEeC-CCEEEEEEEHHH
Confidence                           001123456777    7887 8999999999999999999999999999998 899999999999


Q ss_pred             HHHHh
Q 013669          331 IRHLL  335 (438)
Q Consensus       331 l~~~l  335 (438)
                      |++++
T Consensus       151 il~~l  155 (156)
T d2yzqa1         151 LLKVL  155 (156)
T ss_dssp             HGGGG
T ss_pred             HHHHh
Confidence            98765

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=7.5e-18  Score=142.31  Aligned_cols=123  Identities=14%  Similarity=0.276  Sum_probs=109.2

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +|+++|.    .+++++++++++.+|++.|.+++++++||+|++ |+++|++|..|+++.+......     ....++++
T Consensus         4 ~v~dim~----~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~-----~~~~~v~~   73 (142)
T d1pvma4           4 RVEKIMN----SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKK-----PDEVPIRL   73 (142)
T ss_dssp             BGGGTSB----TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCC-----GGGSBGGG
T ss_pred             EHHHhCC----CCCcEECCcCcHHHHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhccc-----cccccccc
Confidence            5899998    789999999999999999999999999999987 8999999999998876543211     24557888


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                          +|+. +++++.+++++.+++++|.+++++++||+|+ +|+++|+||..||++.+.
T Consensus        74 ----im~~-~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          74 ----VMRK-PIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             ----TSBS-SCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTTSC
T ss_pred             ----cccc-ccccccchhhHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHHHHh
Confidence                7886 8999999999999999999999999999998 899999999999988754

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.74  E-value=3.4e-18  Score=141.63  Aligned_cols=114  Identities=21%  Similarity=0.336  Sum_probs=102.9

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcC-----CceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhccc
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAV  356 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~  356 (438)
                      +|++ +++++++++++.+|++.|.+++     ++.+||+|+ +++++|+++.++++..         ....++.++|.+ 
T Consensus         6 iM~~-d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~~l~~~---------~~~~~v~~im~~-   73 (127)
T d2ouxa2           6 IMTT-EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVN---------DDDTLIADILNE-   73 (127)
T ss_dssp             HCBS-CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTS---------CTTSBHHHHSBS-
T ss_pred             hCCC-CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec-CCeEEEEEEeeccccc---------cccEEhhhhccC-
Confidence            7887 8999999999999999998874     789999998 8999999999998643         135689999985 


Q ss_pred             CCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcC
Q 013669          357 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFE  419 (438)
Q Consensus       357 ~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e  419 (438)
                                 +++++++++++.+|+++|.+++++++||||++| +++|+||..||++.+..|
T Consensus        74 -----------~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g-~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          74 -----------RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDD-HLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             -----------CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTC-BEEEEEEHHHHHHHHHHH
T ss_pred             -----------CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCC-EEEEEEEHHHHHHHHHHH
Confidence                       899999999999999999999999999999988 999999999999987653

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.74  E-value=1.1e-17  Score=138.27  Aligned_cols=112  Identities=21%  Similarity=0.396  Sum_probs=95.7

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeC-CCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGK  365 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~  365 (438)
                      +++++++++++.+|+++|.+++++++||+|+ .+++++|++|.+|++.....        ..+..+.|..          
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~--------~~~~~~~~~~----------   67 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY--------NAPISEHMTS----------   67 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCS--------SSBTTTSCCC----------
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhcc--------CCceeeeeec----------
Confidence            6789999999999999999999999999984 25789999999999876432        1222233322          


Q ss_pred             CCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          366 VNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       366 ~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                       .+++++.+++++.+|+++|.+++++++||||++| +++|+||++||++++..
T Consensus        68 -~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g-~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          68 -EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSG-RLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             -SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTS-BEEEEEEHHHHHHHHHC
T ss_pred             -cceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCC-eEEEEEEHHHHHHHhhC
Confidence             3789999999999999999999999999999998 99999999999998775

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=3.7e-18  Score=143.86  Aligned_cols=128  Identities=16%  Similarity=0.249  Sum_probs=112.0

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +|+++|+    .+++++++++|+.+|+++|.+++++++||+|.+ ++++|++|..|+++.+...............++++
T Consensus         3 ~V~~iMt----~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~   77 (141)
T d3ddja1           3 PVKVFMS----TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKD   77 (141)
T ss_dssp             BHHHHSB----CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHH
T ss_pred             eeHHhCc----CCCeEEcCcCcHHHHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHH
Confidence            5899999    779999999999999999999999999999987 89999999999998876432111222235678888


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                          +|++ +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+||+..+.
T Consensus        78 ----im~~-~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~-~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          78 ----VMVT-NLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALH  130 (141)
T ss_dssp             ----HSBC-CCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             ----HhCc-ccccccccchhhHHHHHHHHcCCCEEEEEcc-CCEEEEEEEHHHHHHHHH
Confidence                7887 8999999999999999999999999999998 899999999999998875

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=9.8e-18  Score=139.72  Aligned_cols=128  Identities=16%  Similarity=0.275  Sum_probs=110.7

Q ss_pred             CchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          197 TTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      .+|+++|...  .+++++.+++++.+|+++|.+++++++||+|++ |+++|++|..|+++++..... .........+++
T Consensus         2 ~tv~~~mip~--~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~-~~~~~~~~~~v~   77 (132)
T d1yava3           2 ATVGQFMIEA--DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLER-IEFEKLDQITVE   77 (132)
T ss_dssp             CBHHHHSEEG--GGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSS-BCGGGTTTSBHH
T ss_pred             CCHHHccccc--cceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhcccc-cccccccccccc
Confidence            4689999633  779999999999999999999999999999987 899999999999999876532 233445567888


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +    +|.+ ++.++.+++++.+++..|.+++  .+||+|+ +|+++|+||.+|+++.+.
T Consensus        78 ~----~m~~-~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~-~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          78 E----VMLT-DIPRLHINDPIMKGFGMVINNG--FVCVEND-EQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             H----HSBC-SCCEEETTSBHHHHHHHTTTCS--EEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             c----cccc-cccccccchhHHHHHHHHHhCC--EEEEEcc-CCEEEEEEEHHHHHHHHH
Confidence            8    7876 8999999999999999998765  4999998 899999999999998864

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=4.7e-18  Score=142.19  Aligned_cols=124  Identities=22%  Similarity=0.295  Sum_probs=107.2

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------cccc
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------NFRQ  346 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~-------~~~~  346 (438)
                      ++++    +|.+ +++++++++++.+|++.|.+++++++||+|   ++++|+++..|++..+.......       ....
T Consensus         2 ~V~~----lM~~-~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (135)
T d3ddja2           2 NIET----LMIK-NPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHIST   73 (135)
T ss_dssp             SGGG----TCEE-SCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHT
T ss_pred             EeeE----EeeC-CCeEECCCCcHHHHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhcccccc
Confidence            4677    7887 788999999999999999999999999997   36999999999998875432111       2345


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .+++++|..            +++++++++++.+|+++|.+++++++||+|++| +++|+||++||++++..
T Consensus        74 ~~v~~im~~------------~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g-~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          74 TPIIDYMTP------------NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIND-KPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             SBGGGTSEE------------SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHGGGGGG
T ss_pred             CCHHHHhCC------------ccceEEeccccchhhhhhhhcceeEEEEEeCCC-EEEEEEEHHHHHHHHHH
Confidence            688899985            899999999999999999999999999999998 99999999999998863

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=2.3e-17  Score=135.12  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=106.4

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +|+++|.    .+++++++++|+.+|++.|.+++++.+||.++  |+++|++|.+|+++.+.....      +...++.+
T Consensus         1 kV~diM~----~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~------~~~~~v~~   68 (120)
T d1pbja3           1 RVEDVMV----TDVDTIDITASLEDVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDD------LAEVKVWE   68 (120)
T ss_dssp             CHHHHCB----CSCCEEETTCBHHHHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCC------TTTSBHHH
T ss_pred             ChHHhCC----CCCeEECCcCcHHHHHHHHHHcCceEEEEEeC--CcEEEEEEeeecccccccccc------ccceeEee
Confidence            3789999    78999999999999999999999999999985  799999999999998876532      24567888


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  334 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  334 (438)
                          +|++ ++.++.+++++.+|++.|.+++++++||++  +|+++|++|.+|++++
T Consensus        69 ----~m~~-~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          69 ----VMER-DLVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRA  118 (120)
T ss_dssp             ----HCBC-GGGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHH
T ss_pred             ----eccc-ccccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhc
Confidence                7887 899999999999999999999999999987  6899999999999886

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=2.8e-18  Score=145.34  Aligned_cols=115  Identities=22%  Similarity=0.326  Sum_probs=103.2

Q ss_pred             CCCCCCceEEcCCCcHHHHHHHHHHcC-----CceEeEEeCCCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhccc
Q 013669          282 FMSSDEVITIQSNELILEAFKRMKDNN-----IGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAV  356 (438)
Q Consensus       282 ~m~~~~vv~v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~  356 (438)
                      +|++ +++++++++++.+|++.|.+++     +..+||+|+ +|+++|+++.+|++...         ...++.++|.+ 
T Consensus         6 iM~~-~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~dl~~~~---------~~~~v~~im~~-   73 (144)
T d2yvxa2           6 LMTP-EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVAD---------PRTRVAEIMNP-   73 (144)
T ss_dssp             GCBS-CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT-TCBBCCBCBHHHHTTSC---------TTCBSTTTSBS-
T ss_pred             ccCC-CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC-CCCEecccchhhhhhcc---------cccchHHhccc-
Confidence            7998 8999999999999999998774     788999998 89999999999986531         24578889985 


Q ss_pred             CCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhcCC
Q 013669          357 VPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIFEP  420 (438)
Q Consensus       357 ~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~e~  420 (438)
                                 +++++++++++.+|++.|.+++++++||||++| +++|+||.+||++.+..|.
T Consensus        74 -----------~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g-~lvGiIt~~Dil~~l~~e~  125 (144)
T d2yvxa2          74 -----------KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG-RLVGIVTVDDVLDVLEAEA  125 (144)
T ss_dssp             -----------SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSC-BEEEEEEHHHHHHHHHHHH
T ss_pred             -----------CCccCCCCChHHHHHHHHHHcCCCEEEEEeECC-EEEEEEEHHHHHHHHHHHh
Confidence                       899999999999999999999999999999998 9999999999999887543

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.71  E-value=2.7e-17  Score=136.76  Aligned_cols=121  Identities=19%  Similarity=0.220  Sum_probs=101.8

Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeC-CCCeEEEEEeHHHHHHHhcCCccccccccCcHHHH
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDF  352 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~  352 (438)
                      ++++    +|++ +++++++++++.+|++.|.+++++++||++. .+++++|+++..|+++.+.....    ....+ ..
T Consensus         2 ~V~d----im~~-~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~----~~~~~-~~   71 (131)
T d2riha1           2 RTSE----LLKR-PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD----LDGPA-MP   71 (131)
T ss_dssp             BGGG----GCCS-CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC----TTSBS-GG
T ss_pred             CHHH----hccC-CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccc----ccccc-cc
Confidence            4677    7887 8999999999999999999999999999942 15889999999999988764332    11222 33


Q ss_pred             hcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          353 MNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       353 m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                      +..            ++.++.+++++.+|+++|.+++++++||+|++| +++|+||..||++.+.
T Consensus        72 ~~~------------~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g-~l~Giit~~Dll~~~~  123 (131)
T d2riha1          72 IAN------------SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNG-ELVGVLSIRDLCFERA  123 (131)
T ss_dssp             GCB------------CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTS-CEEEEEEHHHHHSCHH
T ss_pred             ccc------------cceeEeeecchHHHHHHHHHCCeEEEEEEcCCC-eEEEEEEHHHHHHHHH
Confidence            332            778999999999999999999999999999998 9999999999998754

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.2e-17  Score=143.60  Aligned_cols=132  Identities=15%  Similarity=0.281  Sum_probs=103.7

Q ss_pred             ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-----cc
Q 013669          271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-----NF  344 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~-----~~  344 (438)
                      ...++.|    +|.. .+++++..++++.+|++.|.+++++++||+++++++++|+++.+|++..+.......     ..
T Consensus        11 ~~~t~~D----lm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~   86 (159)
T d2v8qe2          11 KSHRCYD----LIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYEL   86 (159)
T ss_dssp             HHSBGGG----GSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCG
T ss_pred             cCCEEEe----ECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhh
Confidence            4567888    5643 368999999999999999999999999999865789999999999988864311100     00


Q ss_pred             ccC-------cHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 013669          345 RQL-------TVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFI  417 (438)
Q Consensus       345 ~~~-------~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~  417 (438)
                      ...       ...++|.            .++++|++++++.+|+++|.++++|++||+|+++|+++||||++||++++.
T Consensus        87 ~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          87 EEHKIETWREVYLQDSF------------KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             GGCBHHHHHHHHSSSSC------------CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             hhhhcccccceeeeeec------------cceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            000       1112222            488999999999999999999999999999854349999999999999886


Q ss_pred             c
Q 013669          418 F  418 (438)
Q Consensus       418 ~  418 (438)
                      .
T Consensus       155 ~  155 (159)
T d2v8qe2         155 L  155 (159)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.71  E-value=1.9e-17  Score=145.21  Aligned_cols=141  Identities=13%  Similarity=0.154  Sum_probs=104.1

Q ss_pred             ccCCccccccCCCCC-CCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCcccc-------
Q 013669          271 ASQPISDLGLPFMSS-DEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFS-------  342 (438)
Q Consensus       271 ~~~~v~~l~l~~m~~-~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~~~~-------  342 (438)
                      ...++.+    +|.+ .+++++.++.++.+|++.|.+++++++||+|+++++++|++|..|++..+.......       
T Consensus        18 ~~~~~~d----vm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~   93 (179)
T d2ooxe1          18 RSRTSYD----VLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIA   93 (179)
T ss_dssp             HHSBHHH----HSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGG
T ss_pred             cCCEeee----eCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhh
Confidence            3457778    5653 379999999999999999999999999999964689999999999988764210000       


Q ss_pred             ccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCC----CeEEEEEeHHHHHHHhhc
Q 013669          343 NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEE----AEVVGVITLRDVISCFIF  418 (438)
Q Consensus       343 ~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g----~~lvGvIT~~DIl~~l~~  418 (438)
                      .........+......   ......++++|.++++|.+|+++|.++++|++||+|++|    ++++|+||++||++++..
T Consensus        94 ~~~~~~~~~~~~~~~~---~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~  170 (179)
T d2ooxe1          94 EIDKFRLLGLREVERK---IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM  170 (179)
T ss_dssp             GGGGSBHHHHHHHHHH---TTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred             hhhccchhhhccccee---eeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHH
Confidence            0001111111000000   000124889999999999999999999999999999654    269999999999999986

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=2.7e-17  Score=135.07  Aligned_cols=116  Identities=18%  Similarity=0.320  Sum_probs=87.2

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +|+++|.    .+++++++++++.+|+++|.+++++++||+|++ |+++|+||..|++...            ...++.+
T Consensus         2 ~v~diM~----~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~------------~~~~~~~   64 (122)
T d2yzqa2           2 RVKTIMT----QNPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNP------------DEEQLAM   64 (122)
T ss_dssp             BHHHHSE----ESCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC----------------------C
T ss_pred             CcccccC----CCCEEECCcCcHHHHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhh------------cccchhh
Confidence            4889998    679999999999999999999999999999987 8999999999987532            2346777


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                          +|.+ +++++.+++++.++++.|.++++.++||+|+ +|+++|+||.+|+++.+.
T Consensus        65 ----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          65 ----LVKR-DVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             ----CCBS-CCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTT
T ss_pred             ----cccc-ceeecchhhHHHHHHHHHHHcCcEEEEEEeC-CCEEEEEEEHHHHHHHHH
Confidence                6776 8899999999999999999999999999997 899999999999998754

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.68  E-value=1.7e-16  Score=131.03  Aligned_cols=114  Identities=20%  Similarity=0.339  Sum_probs=96.1

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCCc
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEV  288 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~-~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~v  288 (438)
                      .++++.+++|+.+|+++|.+++++++||+|+. +++++|++|..|+.+....           ..+....   +|.. ++
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~-----------~~~~~~~---~~~~-~~   70 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDY-----------NAPISEH---MTSE-HL   70 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCS-----------SSBTTTS---CCCS-CC
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhcc-----------CCceeee---eecc-ce
Confidence            46799999999999999999999999999962 3789999999999764332           2233331   3444 78


Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcCCc
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPE  339 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~~~  339 (438)
                      +++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|+++.+..+.
T Consensus        71 ~~~~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGiiT~~Dil~~~~~p~  120 (126)
T d1zfja4          71 VTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEFPH  120 (126)
T ss_dssp             CCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHCTT
T ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEEcC-CCeEEEEEEHHHHHHHhhCcc
Confidence            99999999999999999999999999997 899999999999999876543

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.68  E-value=9.4e-17  Score=137.78  Aligned_cols=127  Identities=16%  Similarity=0.245  Sum_probs=102.7

Q ss_pred             cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC-CCeEEEEEeHHHHHHHhcCCcccc--------
Q 013669          272 SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ-QKKIVGNVSIRDIRHLLLKPELFS--------  342 (438)
Q Consensus       272 ~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~lvGiIs~~Dl~~~l~~~~~~~--------  342 (438)
                      ..++++    +|++ +++++++++++.++++.|.+++++++||+|+. ++.++|+++..|++.++.......        
T Consensus        10 ~~~V~d----iM~~-~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~   84 (160)
T d2d4za3          10 NIQVGD----IMVR-DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEM   84 (160)
T ss_dssp             SCBTTS----SSBS-SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSC
T ss_pred             ceEHHH----hcCC-CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhc
Confidence            568899    8997 99999999999999999999999999999852 478999999999988875311000        


Q ss_pred             --------------ccccCcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEe
Q 013669          343 --------------NFRQLTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVIT  408 (438)
Q Consensus       343 --------------~~~~~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT  408 (438)
                                    ......+.++|.            .+++++.+++++.+++++|.+++++++||+|+ | +++||||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~-g-~lvGiIt  150 (160)
T d2d4za3          85 LTLEEIYRWEQREKNVVVNFETCRID------------QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-G-KLVGVVA  150 (160)
T ss_dssp             CBHHHHHHHHHHHTTCBCCTTSSCEE------------CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-T-EEEEEEE
T ss_pred             cccchhhhhhhhhcccccceeeeccc------------CCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC-C-EEEEEEE
Confidence                          000111222232            47899999999999999999999999999884 6 9999999


Q ss_pred             HHHHHHHhh
Q 013669          409 LRDVISCFI  417 (438)
Q Consensus       409 ~~DIl~~l~  417 (438)
                      ++||++++.
T Consensus       151 ~~Di~k~I~  159 (160)
T d2d4za3         151 LAEIQAAIE  159 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            999999875

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.68  E-value=1.7e-16  Score=131.14  Aligned_cols=116  Identities=16%  Similarity=0.333  Sum_probs=103.9

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhC-----CCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKY-----RLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  272 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~-----~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~  272 (438)
                      +++.+|.    .+++++++++|+.+|++.|.++     +++.+||+|++ ++++|+++..+++..   .         ..
T Consensus         2 taG~iM~----~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~---~---------~~   64 (127)
T d2ouxa2           2 TAGAIMT----TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVN---D---------DD   64 (127)
T ss_dssp             BHHHHCB----SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTS---C---------TT
T ss_pred             ChhHhCC----CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeeccccc---c---------cc
Confidence            5788999    7899999999999999999877     47899999988 899999999888531   1         35


Q ss_pred             CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .++.+    +|++ +++++.+++++.+|+++|.+++++++||+|+ +|+++|+||..||+.++.
T Consensus        65 ~~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~-~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          65 TLIAD----ILNE-RVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             SBHHH----HSBS-CCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             EEhhh----hccC-CCccCCCCCCHHHHHHHHHHhCCEEEEEEeC-CCEEEEEEEHHHHHHHHH
Confidence            67899    7987 8999999999999999999999999999997 899999999999998864

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=2.1e-16  Score=129.51  Aligned_cols=116  Identities=14%  Similarity=0.224  Sum_probs=104.3

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISD  277 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~  277 (438)
                      +|+++|.    +++.++++++|+.+|+++|.+++.+++||+|++ ++++|++|..|++++.            ...++.+
T Consensus         2 ~v~~~m~----~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~------------~~~~v~~   64 (121)
T d1vr9a3           2 KVKKWVT----QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLD------------LDSSVFN   64 (121)
T ss_dssp             BGGGGCB----SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSC------------TTSBSGG
T ss_pred             Cchhhhc----CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhh------------ccccccc
Confidence            4778888    789999999999999999999999999999977 8999999999996531            3457888


Q ss_pred             cccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          278 LGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       278 l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                          +|.. +++++++++++.+++++|.++++..+||+|+ +|+++|+||..|++.++.
T Consensus        65 ----~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde-~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          65 ----KVSL-PDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             ----GCBC-TTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ----cccC-ccEEECCCCCHHHHHHHHHhcCceeeeeECC-CCeEEEEEEHHHHHHHHH
Confidence                6776 7889999999999999999999999999998 899999999999999875

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.66  E-value=2.5e-16  Score=130.73  Aligned_cols=120  Identities=18%  Similarity=0.244  Sum_probs=101.5

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPIS  276 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~-~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~  276 (438)
                      +|+++|.    ++++++++++|+.+|++.|.+++++++||++.+ .++++|+++..|+++.+.....       ..... 
T Consensus         2 ~V~dim~----~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~-------~~~~~-   69 (131)
T d2riha1           2 RTSELLK----RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-------LDGPA-   69 (131)
T ss_dssp             BGGGGCC----SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-------TTSBS-
T ss_pred             CHHHhcc----CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccc-------ccccc-
Confidence            5899998    789999999999999999999999999999432 2789999999999998875421       11222 


Q ss_pred             ccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669          277 DLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  335 (438)
Q Consensus       277 ~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l  335 (438)
                      .    .+.. ++.++.+++++.+++++|.+++++++||+|+ +|+++|+||..||++.+
T Consensus        70 ~----~~~~-~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~-~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          70 M----PIAN-SPITVLDTDPVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFER  122 (131)
T ss_dssp             G----GGCB-CCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCH
T ss_pred             c----cccc-cceeEeeecchHHHHHHHHHCCeEEEEEEcC-CCeEEEEEEHHHHHHHH
Confidence            2    2344 6788999999999999999999999999998 89999999999998654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2.5e-16  Score=132.37  Aligned_cols=122  Identities=17%  Similarity=0.206  Sum_probs=95.5

Q ss_pred             CCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccccc-CCccccccCCCCCC
Q 013669          208 WAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS-QPISDLGLPFMSSD  286 (438)
Q Consensus       208 ~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~-~~v~~l~l~~m~~~  286 (438)
                      +.+++++.+++++.+|+++|.+++++++||+|.+ ++++|++|..|+++++.............. .....    .+.. 
T Consensus        16 ~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-   89 (140)
T d2nyca1          16 QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS----DDFE-   89 (140)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC---------
T ss_pred             CCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhhhhhh----hccc-
Confidence            4889999999999999999999999999999987 899999999999999876532111100000 00111    2333 


Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++++.
T Consensus        90 ~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~-~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          90 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             --CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             ccEEECCCCcHHHHHHHHHhcCeeEEEEEeC-CCeEEEEEEHHHHHHHHh
Confidence            6889999999999999999999999999998 899999999999998763

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.5e-16  Score=136.63  Aligned_cols=134  Identities=13%  Similarity=0.159  Sum_probs=107.1

Q ss_pred             CCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCC-----Cccccc
Q 013669          196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGR-----DWFDII  270 (438)
Q Consensus       196 ~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~-----~~~~~l  270 (438)
                      ..+++|+|...  .++++++.++++.+|+++|.+++++++||+|++.++++|++|..|+++.+......     ......
T Consensus        12 ~~t~~Dlm~~~--~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~   89 (159)
T d2v8qe2          12 SHRCYDLIPTS--SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH   89 (159)
T ss_dssp             HSBGGGGSCSE--EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred             CCEEEeECCCC--CceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhh
Confidence            45689999643  67999999999999999999999999999987658899999999999887543110     000000


Q ss_pred             c----cCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          271 A----SQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       271 ~----~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .    .....+    +|.. +++++++++++.+++++|.+++++++||+|+++|+++|+||.+||++++.
T Consensus        90 ~~~~~~~~~~~----~~~~-~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          90 KIETWREVYLQ----DSFK-PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             BHHHHHHHHSS----SSCC-CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             hcccccceeee----eecc-ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            0    011223    5665 89999999999999999999999999999864789999999999999874

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.65  E-value=3.5e-18  Score=140.06  Aligned_cols=112  Identities=19%  Similarity=0.317  Sum_probs=59.9

Q ss_pred             CceEEcCCCcHHHHHHHHHHcCCceEeEEeC--CCCeEEEEEeHHHHHHHhcCCccccccccCcHHHHhcccCCCCCCCC
Q 013669          287 EVITIQSNELILEAFKRMKDNNIGGIPVVEG--QQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSG  364 (438)
Q Consensus       287 ~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~lvGiIs~~Dl~~~l~~~~~~~~~~~~~v~~~m~~~~~~~~~~~  364 (438)
                      +++++++++++.+|+++|.+++++++||+|+  .+++++|++|.+|+...... .     ...++.+++..         
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~-~-----~~~~~~~~~~~---------   69 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE-E-----HDRFLEEIMTK---------   69 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC----------------------------CCSB---------
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcc-c-----cCceeEEEEee---------
Confidence            5789999999999999999999999999984  25789999999998654321 1     13455565542         


Q ss_pred             CCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 013669          365 KVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISC  415 (438)
Q Consensus       365 ~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~  415 (438)
                       ..+++++++++++.+|+++|.+++++++||||++| +++|+||++||++.
T Consensus        70 -~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~-~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          70 -REDLVVAPAGITLKEANEILQRSKKGKLPIVNEND-ELVAIIARTDLKKN  118 (120)
T ss_dssp             -TTTSCCEETTCCHHHHHHHTCSCC---CEEEETTT-EEEEEECHHHHHHH
T ss_pred             -ccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCC-EEEEEEEHHHhhhc
Confidence             13689999999999999999999999999999998 99999999999985

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=1.6e-16  Score=132.61  Aligned_cols=126  Identities=19%  Similarity=0.288  Sum_probs=107.3

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCc----ccccccC
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDW----FDIIASQ  273 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~----~~~l~~~  273 (438)
                      +|+++|.    .+++++++++++.+|+++|.+++++++||+|+   +++|++|..|+++++........    ...+...
T Consensus         2 ~V~~lM~----~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (135)
T d3ddja2           2 NIETLMI----KNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT   74 (135)
T ss_dssp             SGGGTCE----ESCCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred             EeeEEee----CCCeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccchhhhhccccccC
Confidence            4889998    56889999999999999999999999999974   69999999999988764421111    1113456


Q ss_pred             CccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          274 PISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       274 ~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      ++++    +|+. +++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|+++++.
T Consensus        75 ~v~~----im~~-~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          75 PIID----YMTP-NPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             BGGG----TSEE-SCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGG
T ss_pred             CHHH----HhCC-ccceEEeccccchhhhhhhhcceeEEEEEeC-CCEEEEEEEHHHHHHHHH
Confidence            7888    7887 8999999999999999999999999999998 899999999999998865

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=3.2e-16  Score=132.36  Aligned_cols=127  Identities=20%  Similarity=0.206  Sum_probs=103.2

Q ss_pred             hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCC---------CCcccc
Q 013669          199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKG---------RDWFDI  269 (438)
Q Consensus       199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~---------~~~~~~  269 (438)
                      +.++|.    .+++++.+++++.+|++.|.+++++++||+|++ ++++|++|..|+++++.....         ......
T Consensus         6 v~~~m~----~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~   80 (145)
T d1o50a3           6 VCKLIS----LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKR   80 (145)
T ss_dssp             HTTSSC----CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCCC
T ss_pred             hHHhCC----CCCEEECCcCcHHHHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhhh
Confidence            556666    778999999999999999999999999999977 899999999999987653210         001111


Q ss_pred             cccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          270 IASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       270 l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      +...++.+    +|.  +++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+||++++.+
T Consensus        81 ~~~~~~~~----~~~--~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~-~g~i~Gvit~~dil~~l~~  141 (145)
T d1o50a3          81 LIAKNASE----IML--DPVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALWK  141 (145)
T ss_dssp             CSSCBHHH----HCB--CCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             ccccCHHH----HcC--CCEEEcCCCCHHHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHHh
Confidence            22334444    343  5788999999999999999999999999997 8999999999999998764

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=6.1e-16  Score=130.73  Aligned_cols=135  Identities=15%  Similarity=0.189  Sum_probs=106.1

Q ss_pred             CCCCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccc-cc
Q 013669          194 FKSTTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDII-AS  272 (438)
Q Consensus       194 ~~~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l-~~  272 (438)
                      |...+++++.- ..+++++++.+++++.+|+++|.+++++++||+|++ |+++|++|..|+++.+........-... ..
T Consensus         6 f~~~~l~~l~i-~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~   83 (145)
T d2v8qe1           6 FMSKSLEELQI-GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKA   83 (145)
T ss_dssp             GGGSBHHHHTC-SBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHH
T ss_pred             HhhCCHHHHcC-CCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhc
Confidence            33445777654 123679999999999999999999999999999987 8999999999998887654211100000 01


Q ss_pred             CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .....    .|.. +++++.+++++.+++++|.+++++++||+|+ +|+++|+||.+||++++.
T Consensus        84 ~~~~~----~~~~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          84 LQHRS----HYFE-GVLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             GGGCC----SCCC-SCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             cchhh----hccC-CCeEECCCCcHHHHHHHHHHcCceEEEEEcc-CCEEEEEEEHHHHHHHHH
Confidence            11222    3554 7889999999999999999999999999987 899999999999999875

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.65  E-value=5.9e-16  Score=132.66  Aligned_cols=129  Identities=14%  Similarity=0.169  Sum_probs=105.2

Q ss_pred             CCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC-CCCEEEEEeHHHHHHHhhcCCCC---Cccc---
Q 013669          196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG-TPDIKNYITQSAVVQGLEGCKGR---DWFD---  268 (438)
Q Consensus       196 ~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~-~~~v~Giit~~Di~~~l~~~~~~---~~~~---  268 (438)
                      ..+|+|+|.    ++++++++++++.+|+++|.+++++++||+|+. ++.++|++|..|+++++......   ....   
T Consensus        10 ~~~V~diM~----~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~   85 (160)
T d2d4za3          10 NIQVGDIMV----RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEML   85 (160)
T ss_dssp             SCBTTSSSB----SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCC
T ss_pred             ceEHHHhcC----CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcc
Confidence            457999999    789999999999999999999999999999853 36899999999999887542110   0000   


Q ss_pred             -------------ccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669          269 -------------IIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  335 (438)
Q Consensus       269 -------------~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l  335 (438)
                                   ......+.+    +|.+ .++++.+++++.+++++|.+++++++||++  +|+++|+||.+||++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETC----RIDQ-SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSS----CEEC-CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             ccchhhhhhhhhcccccceeee----cccC-CCEEEcCCCCHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHHHh
Confidence                         011122333    5665 789999999999999999999999999998  68999999999999875

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.64  E-value=5.4e-16  Score=132.37  Aligned_cols=130  Identities=15%  Similarity=0.259  Sum_probs=103.6

Q ss_pred             hhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCcccccccCCcccc
Q 013669          199 VRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDL  278 (438)
Q Consensus       199 v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l  278 (438)
                      +++++- ..|++++++.+++++.+|+++|.+++++++||+|++ ++++|++|..|+++++.......     ...++.+.
T Consensus         3 l~~~~i-g~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~-----~~~~v~~~   75 (153)
T d2ooxe2           3 LNQMTI-GTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSN-----LDLSVGEA   75 (153)
T ss_dssp             GGGTCC-SBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGG-----GGSBHHHH
T ss_pred             HHHcCC-CCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccc-----cccchhhh
Confidence            444432 234789999999999999999999999999999987 89999999999999886542111     22333331


Q ss_pred             c--cCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhcC
Q 013669          279 G--LPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       279 ~--l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~~  337 (438)
                      -  -+.+.. +++++.+++++.++++.|.+++++++||+|+ +|+++|+||.+|+++++..
T Consensus        76 ~~~~~~~~~-~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          76 LLKRPANFD-GVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             HHTSCCCSS-CCCEECTTCBHHHHHHHHHHSCCSEEEEECT-TCBEEEEEEHHHHHHHHHS
T ss_pred             eeeeecccC-CCeEECCCCcHHHHHHhhhhceeeEEEEEcC-CCEEEEEEEHHHHHHHHHc
Confidence            0  012333 7889999999999999999999999999997 8999999999999988753

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=1.4e-16  Score=134.62  Aligned_cols=116  Identities=16%  Similarity=0.319  Sum_probs=103.5

Q ss_pred             chhhhccccCCCCceEEeCCCCHHHHHHHHHhCC-----CCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccccccc
Q 013669          198 TVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYR-----LRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFDIIAS  272 (438)
Q Consensus       198 ~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~-----i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~  272 (438)
                      +++.+|+    .+++++++++|+.+|+++|.+++     ++.+||+|++ |+++|+++.+|+.+..            ..
T Consensus         2 taG~iM~----~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~------------~~   64 (144)
T d2yvxa2           2 EAGGLMT----PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVAD------------PR   64 (144)
T ss_dssp             SSGGGCB----SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSC------------TT
T ss_pred             CcccccC----CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhcc------------cc
Confidence            4788999    78999999999999999998774     7889999987 8999999999985421            34


Q ss_pred             CCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHhc
Q 013669          273 QPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLL  336 (438)
Q Consensus       273 ~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l~  336 (438)
                      .++.+    +|.+ +++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+||+..+.
T Consensus        65 ~~v~~----im~~-~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~-~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          65 TRVAE----IMNP-KVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             CBSTT----TSBS-SCCCEESSCCHHHHHHHHHHSCCSEEEEECS-SCBEEEEEEHHHHHHHHH
T ss_pred             cchHH----hccc-CCccCCCCChHHHHHHHHHHcCCCEEEEEeE-CCEEEEEEEHHHHHHHHH
Confidence            57788    7887 8999999999999999999999999999997 899999999999998875

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.61  E-value=9.9e-16  Score=134.05  Aligned_cols=139  Identities=14%  Similarity=0.178  Sum_probs=105.9

Q ss_pred             CCchhhhccccCCCCceEEeCCCCHHHHHHHHHhCCCCEEEEEcCCCCCEEEEEeHHHHHHHhhcCCCCCccc----ccc
Q 013669          196 STTVRSIIKSYRWAPFLPVATDDSMLSVLLLLSKYRLRNVPIIEPGTPDIKNYITQSAVVQGLEGCKGRDWFD----IIA  271 (438)
Q Consensus       196 ~~~v~di~~~~~~~~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~~~~v~Giit~~Di~~~l~~~~~~~~~~----~l~  271 (438)
                      ..++.|+|...  .++++++++.++.+|+..|.+++++++||+|++.++++|++|..|+++++..........    .+.
T Consensus        19 ~~~~~dvm~~s--~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~   96 (179)
T d2ooxe1          19 SRTSYDVLPTS--FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEID   96 (179)
T ss_dssp             HSBHHHHSCSE--EEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGG
T ss_pred             CCEeeeeCCCC--CcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhh
Confidence            34689999743  579999999999999999999999999999976578999999999998775321000000    000


Q ss_pred             cCCcccc-----ccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCC----CCeEEEEEeHHHHHHHhcC
Q 013669          272 SQPISDL-----GLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQ----QKKIVGNVSIRDIRHLLLK  337 (438)
Q Consensus       272 ~~~v~~l-----~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----~~~lvGiIs~~Dl~~~l~~  337 (438)
                      ......+     ....|.. +++++.+++++.+++..|.+++++++||+|++    +++++|++|.+||++.+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~-~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~  170 (179)
T d2ooxe1          97 KFRLLGLREVERKIGAIPP-ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM  170 (179)
T ss_dssp             GSBHHHHHHHHHHTTCSCS-SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred             ccchhhhcccceeeeeccc-CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHH
Confidence            0000000     0114665 89999999999999999999999999999852    2379999999999999863

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.9e-15  Score=127.90  Aligned_cols=134  Identities=10%  Similarity=0.197  Sum_probs=104.5

Q ss_pred             CchhhhccccCCCCceE--EeCCCCHHHHHHHHHhCCCCEEEEEcC-CCCCEEEEEeHHHHHHHhhcCCCCC--------
Q 013669          197 TTVRSIIKSYRWAPFLP--VATDDSMLSVLLLLSKYRLRNVPIIEP-GTPDIKNYITQSAVVQGLEGCKGRD--------  265 (438)
Q Consensus       197 ~~v~di~~~~~~~~~i~--v~~~~sl~~al~~m~~~~i~~lpVvd~-~~~~v~Giit~~Di~~~l~~~~~~~--------  265 (438)
                      +.++|+|....+.++++  +.++.|+.+|+++|.+++++++||+++ ++++++|++|.+|+++++.......        
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            44789998655555544  456789999999999999999999953 3478999999999998875310000        


Q ss_pred             ----------cccccccCCccccccCCCCCCCceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHHh
Q 013669          266 ----------WFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLL  335 (438)
Q Consensus       266 ----------~~~~l~~~~v~~l~l~~m~~~~vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~l  335 (438)
                                ........++.+    +|.+ +++++.+++++.+++++|.+++++++||++  +|+++|+||++|+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~----im~~-~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l  155 (169)
T d2j9la1          83 IYFTEHSPPLPPYTPPTLKLRN----ILDL-SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHI  155 (169)
T ss_dssp             EECSSSCCCCCTTCCCCEECGG----GEES-SCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             hhhcccchhhhhccccccchhh----hccC-CCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHH
Confidence                      000112334566    6877 789999999999999999999999999988  68999999999999987


Q ss_pred             cC
Q 013669          336 LK  337 (438)
Q Consensus       336 ~~  337 (438)
                      .+
T Consensus       156 ~~  157 (169)
T d2j9la1         156 AQ  157 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.7e-15  Score=129.23  Aligned_cols=116  Identities=18%  Similarity=0.284  Sum_probs=94.9

Q ss_pred             eEEcCCCcHHHHHHHHHHcCCceEeEEeC-CCCeEEEEEeHHHHHHHhcCCccc---------------------ccccc
Q 013669          289 ITIQSNELILEAFKRMKDNNIGGIPVVEG-QQKKIVGNVSIRDIRHLLLKPELF---------------------SNFRQ  346 (438)
Q Consensus       289 v~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~lvGiIs~~Dl~~~l~~~~~~---------------------~~~~~  346 (438)
                      +.+.++.|+.++.++|.+++++++||+++ ++++++|+||.+||+.++......                     .....
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPT   99 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCC
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccc
Confidence            55678889999999999999999999942 267899999999999887421000                     01123


Q ss_pred             CcHHHHhcccCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhc
Q 013669          347 LTVRDFMNAVVPTTPDSGKVNPPITCKLESTLGSVIHSLASKSVHRIYVVAGEEAEVVGVITLRDVISCFIF  418 (438)
Q Consensus       347 ~~v~~~m~~~~~~~~~~~~~~~~~~v~~~~tL~ea~~~m~~~~i~~l~VVd~~g~~lvGvIT~~DIl~~l~~  418 (438)
                      .++.++|.+            +++++.+++++.+++++|.+++++++||+| +| +++|+||++||++++..
T Consensus       100 ~~v~~im~~------------~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g-~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1         100 LKLRNILDL------------SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NG-RLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EECGGGEES------------SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TT-EEEEEEEHHHHHHHHHH
T ss_pred             cchhhhccC------------CCEEECCCCcHHHHHHHHHhcCceEEEEEE-CC-EEEEEEEHHHHHHHHHH
Confidence            346777764            789999999999999999999999999887 55 99999999999999874

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.58  E-value=1.1e-16  Score=131.04  Aligned_cols=112  Identities=13%  Similarity=0.210  Sum_probs=57.6

Q ss_pred             CceEEeCCCCHHHHHHHHHhCCCCEEEEEcCC--CCCEEEEEeHHHHHHHhhcCCCCCcccccccCCccccccCCCCCCC
Q 013669          210 PFLPVATDDSMLSVLLLLSKYRLRNVPIIEPG--TPDIKNYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDE  287 (438)
Q Consensus       210 ~~i~v~~~~sl~~al~~m~~~~i~~lpVvd~~--~~~v~Giit~~Di~~~l~~~~~~~~~~~l~~~~v~~l~l~~m~~~~  287 (438)
                      +++++.+++++.+|+++|.+++++++||+|++  .++++|++|.+|+.......         ...++....  .+.+ +
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~---------~~~~~~~~~--~~~~-~   72 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE---------HDRFLEEIM--TKRE-D   72 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC-------------------------------CC--SBTT-T
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc---------cCceeEEEE--eecc-C
Confidence            45789999999999999999999999999852  37899999999985433222         223444420  2233 6


Q ss_pred             ceEEcCCCcHHHHHHHHHHcCCceEeEEeCCCCeEEEEEeHHHHHHH
Q 013669          288 VITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHL  334 (438)
Q Consensus       288 vv~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~lvGiIs~~Dl~~~  334 (438)
                      ++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+||++.
T Consensus        73 ~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~-~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          73 LVVAPAGITLKEANEILQRSKKGKLPIVNE-NDELVAIIARTDLKKN  118 (120)
T ss_dssp             SCCEETTCCHHHHHHHTCSCC---CEEEET-TTEEEEEECHHHHHHH
T ss_pred             ceEECCCCCHHHHHHHHHHcCccEEEEEcC-CCEEEEEEEHHHhhhc
Confidence            899999999999999999999999999998 8999999999999875