Citrus Sinensis ID: 013681
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 438 | 2.2.26 [Sep-21-2011] | |||||||
| O34508 | 366 | L-Ala-D/L-Glu epimerase O | yes | no | 0.778 | 0.931 | 0.337 | 2e-43 | |
| Q9WXM1 | 345 | L-Ala-D/L-Glu epimerase O | yes | no | 0.732 | 0.930 | 0.315 | 1e-36 | |
| Q97MK4 | 358 | L-Ala-D/L-Glu epimerase O | yes | no | 0.742 | 0.907 | 0.320 | 3e-33 | |
| O33949 | 385 | Muconate cycloisomerase 1 | N/A | no | 0.828 | 0.942 | 0.240 | 3e-13 | |
| P42428 | 372 | Chloromuconate cycloisome | yes | no | 0.680 | 0.801 | 0.274 | 7e-13 | |
| P08310 | 375 | Muconate cycloisomerase 1 | yes | no | 0.694 | 0.810 | 0.268 | 2e-12 | |
| Q43931 | 370 | Muconate cycloisomerase 1 | yes | no | 0.698 | 0.827 | 0.24 | 3e-11 | |
| P51981 | 321 | L-Ala-D/L-Glu epimerase O | N/A | no | 0.559 | 0.763 | 0.271 | 9e-11 | |
| P95608 | 373 | Muconate cycloisomerase 1 | no | no | 0.703 | 0.825 | 0.251 | 2e-10 | |
| O34514 | 371 | o-succinylbenzoate syntha | no | no | 0.684 | 0.808 | 0.203 | 4e-09 |
| >sp|O34508|AEEP_BACSU L-Ala-D/L-Glu epimerase OS=Bacillus subtilis (strain 168) GN=ykfB PE=1 SV=1 | Back alignment and function desciption |
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Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 121/358 (33%), Positives = 181/358 (50%), Gaps = 17/358 (4%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK 128
R E + V L+ P L +V E+V +R+ +G VGWGE ++TGD ++
Sbjct: 5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGD---SMDS 61
Query: 129 VREACQFLRQSPPTTLNFA-----LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPL 183
+ A + + + A L +I +L G+ S +A VEMAL D A +PL
Sbjct: 62 IESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGN--MSAKAAVEMALYDGWAQMCGLPL 119
Query: 184 WRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIH 242
+++ GG ++L T T+ SP E + A Y K GF TLK+ VG+ +I D +Q I
Sbjct: 120 YQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIR 179
Query: 243 A-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
V LDAN+G+ +EAV + K+ D G+ L EQPVH+DD +GL V++ A D
Sbjct: 180 KRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTD-ATD 238
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKS-GLHLMID 360
T ++ADES + +V+Q A ++NIKL K G + + I A ++ G+ M+
Sbjct: 239 T---PIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVG 295
Query: 361 GMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
MIET+L A H AA I + + P +L D F GG SG+ + G G
Sbjct: 296 SMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of the other Ala-X dipeptides L-Ala-L-Asp, L-Ala-L-Leu, L-Ala-L-Met, and L-Ala-L-Ser. Is not able to epimerize other L-Ala-X dipeptides. Is also active with L-Ser-L-Glu and, oddly, L-Pro-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Lys-L-Ala, or D-Ala-D-Ala. Bacillus subtilis (strain 168) (taxid: 224308) EC: 5EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1 |
| >sp|Q9WXM1|AEEP_THEMA L-Ala-D/L-Glu epimerase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0006 PE=1 SV=1 | Back alignment and function description |
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Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 169/336 (50%), Gaps = 15/336 (4%)
Query: 73 RELNVALS-------APLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA 125
R +NV LS P + S NV + + L +G G+GE + V G++ +A
Sbjct: 3 RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEA 62
Query: 126 LVKVREACQFLRQSPPTTLNFA-LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
L+ + A + + + N+A + EI L G F S++A V+ A +DA++ + +
Sbjct: 63 LLAIENAVREM-ITGIDVRNYARIFEITDRLFG--FPSLKAAVQFATLDALSQELGTQVC 119
Query: 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV 244
L GG + + T T+ + + A K + GF +K+ VG N+ D + ++ I V
Sbjct: 120 YLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKV 179
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
+I+DAN GYT +EAVE + G+ ++EQPV R+D GL F R
Sbjct: 180 TRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGL----KFVRFHSP 235
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIE 364
V ADES R+ DV ++++E VNIKL K G+ L I++ SGL LMI M E
Sbjct: 236 FPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGE 295
Query: 365 TRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVG 400
+ L ++H A G G ++ +L++ +L E+ F G
Sbjct: 296 SSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRG 331
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of a broad range of other dipeptides; is most efficient with L-Ala-D/L-Phe, L-Ala-D/L-Tyr, and L-Ala-D/L-His. Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 |
| >sp|Q97MK4|AEEP_CLOAB L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=CA_C0192 PE=1 SV=1 | Back alignment and function description |
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Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 175/346 (50%), Gaps = 21/346 (6%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
L+V L P + SV +V +V +++ G VG+G A LVTGD T+++
Sbjct: 11 LSVPLKKPFKTAVRSVNSVNDVVVKIITDTGNVGFGSAASTGLVTGDITESIEGA--INN 68
Query: 135 FLRQSPPTTLNFALDEIARILPGSEF-----ASVRAGVEMALIDAVANSIDIPLWRLFGG 189
++++S + +++ IL + S +A V++AL D PL++L GG
Sbjct: 69 YIKRS---IVGMDIEDFEAILIKLDNCIVGNTSAKAAVDIALYDLYGQRYGAPLYKLLGG 125
Query: 190 ASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AVHPHC 248
N L T ITI SP E S + KLG+ TLK+ VG+N D ++ I A+
Sbjct: 126 FRNKLETDITISVNSPEEMSRDSVDAVKLGYKTLKIKVGKNPKLDIKRMREIRKAIGYEV 185
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
+ +DAN+G+ +EA+ L ++ + G+ L EQPV + GL V+ D I V+
Sbjct: 186 NLRIDANQGWQPKEAIRALNEIENEGLKIELVEQPVKAWNLEGLKMVT----DNVNIPVM 241
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRL 367
ADES S D +VM+ ++NIKL K G+ L+I G+ M+ M+E ++
Sbjct: 242 ADESVFSPKDAARVMEMRACDLINIKLMKTGGIHNALKICALAEVYGMECMLGCMLEGKV 301
Query: 368 ATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN 413
+ A+HLAA I ++L+ P L S D VG GA+Y+ +N
Sbjct: 302 SVTAAVHLAAAKRIITKIDLDGPVLCSRDDVVG-----GAMYDNSN 342
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has probably a role in the metabolism of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the epimerization of L-Ala-D-Asp. Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 |
| >sp|O33949|CATB2_ACILW Muconate cycloisomerase 1-2 OS=Acinetobacter lwoffii GN=catB2 PE=3 SV=2 | Back alignment and function description |
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Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 163/383 (42%), Gaps = 20/383 (5%)
Query: 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP-LVTGDQT 123
V ++ E ++V P L ++++ V +R+ ++G VG GE + L G+++
Sbjct: 6 VKIESVETILVDVPTIRPHRLSVATMNCQTLVLVRIRCADGVVGVGEGTTIGGLAYGEES 65
Query: 124 KALVKVREACQF---LRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSID 180
+KV F L+ T A+ + + G+ FA R+ VE AL DA A +
Sbjct: 66 PESIKVNIDTYFAPLLKGLDATRPGAAMATLRGLFQGNRFA--RSAVETALFDAQAQRLG 123
Query: 181 IPLWRLFGGA-SNSLSTAITIPAVSPAEASELASK-YCKLGFSTLKLNVGRNITADFDVL 238
+PL LFGG +S+ A T+ + + A + + KL +G AD DV
Sbjct: 124 VPLSELFGGRIRDSVDVAWTLASGDTTRDIDEAERVFEAKRHRVFKLKIGSRALAD-DVA 182
Query: 239 QAI---HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
+ A+ +D N+ +T EA+ + D V L EQP+ ++ +GL +
Sbjct: 183 HVVAIQKALQGRGEVRVDVNQAWTESEAIWAGKRFADASV--ALIEQPIAAENRAGLKRL 240
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSG 354
++ A+ + ++ADE+ D + A V +K+A+ G L G + +
Sbjct: 241 TDLAQ----VPIMADEALHGPADAFALASARAADVFAVKIAQSGGLSGAANVAAIALAAN 296
Query: 355 LHLMIDGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTN 413
+ L M+E + T + L + G +K+ L P LL+E+ + +
Sbjct: 297 IDLYGGTMLEGAVGTIASAQLFSTFGELKWGTELFGPLLLTEEILTEPLRYENFVLHLPQ 356
Query: 414 ARGQGGFLKWTIVSCTQVDCCHG 436
G G L W + + D G
Sbjct: 357 GPGLGITLDWDKIDRLRRDTRKG 379
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Catalyzes a syn cycloisomerization. Acinetobacter lwoffii (taxid: 28090) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P42428|TFDD2_CUPPJ Chloromuconate cycloisomerase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=tfdDII PE=3 SV=2 | Back alignment and function description |
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Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 91/331 (27%), Positives = 148/331 (44%), Gaps = 33/331 (9%)
Query: 95 NVAIRVELSNGCVGWGEVAVV--PLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIA 152
+V IR+ G VG GE P +GD +A+ +A +P ALD +
Sbjct: 23 SVLIRLHTKGGIVGIGESITPCGPWWSGDSVEAI----QATINHYLAPLVVGEPALDA-S 77
Query: 153 RILP-------GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVS 204
RI+ G+ FA +AG+EMAL+DAV +D P+ L GG + LS A +
Sbjct: 78 RIMAKLHGRVAGNAFA--KAGIEMALLDAVGKIVDAPIHVLLGGRFRDRLSVAWPLATGD 135
Query: 205 PAEASELASKYCKLGFS-TLKLNVGR-NITADFDVLQAI-HAVHPHCSFILDANEGYTSE 261
+ + A + + G + KL +G + D AI + S +D NE +
Sbjct: 136 VNQEVDEAFRMLEAGKAGAFKLKMGALPLAQDLRRALAIAKELEGKASLRVDPNEAWDEP 195
Query: 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321
+ L L GV + EQPV R + + + AR ++ DE +SL+D +
Sbjct: 196 TTMRALAPLEAAGV--EIIEQPVARWNLDAMARIHRQARSM----LLIDEGVQSLHDASE 249
Query: 322 VMQENLASVVNIKLAKFGVLGTLQ-IIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380
V++ A +V++K+ K G + + + G+H+ + +ET + T + LAA +
Sbjct: 250 VVKRAAAGLVSLKIMKTGGMRPARAMADIANAGGMHVYMGTFLETSIGTAANMQLAASIE 309
Query: 381 CIKY-VNLNTPFLLSEDPFVGGCEVSGAIYN 410
+ Y + P L+ ED CEV A+Y
Sbjct: 310 SLPYGGEVIGPLLIEEDL----CEVP-AVYK 335
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Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 7 |
| >sp|P08310|CATB_PSEPU Muconate cycloisomerase 1 OS=Pseudomonas putida GN=catB PE=1 SV=4 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 149/328 (45%), Gaps = 24/328 (7%)
Query: 82 PLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP-LVTGDQTKALVKVREACQF---LR 137
P L + +++ V IRV S+G G GE + L G ++ +K L
Sbjct: 23 PHKLAMHTMQTQTLVLIRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALV 82
Query: 138 QSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG-ASNSLST 196
P +N A+ ++ ++ G+ FA ++G+E AL+DA + +P+ L GG +SL
Sbjct: 83 GLPADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRLGLPVSELLGGRVRDSLEV 140
Query: 197 AITIPAVSPAEASELASKYCKLG-FSTLKLNVGRN-ITADFDVLQAI-HAVHPHCSFILD 253
A T+ + A A ++ KL +G N + D + AI + S +D
Sbjct: 141 AWTLASGDTARDIAEAQHMLEIRRHRVFKLKIGANPLAQDLKHVVAIKRELGDSASVRVD 200
Query: 254 ANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC 313
N+ + +A+ L D G+ L EQP+ R + SG ++ + ++ADES
Sbjct: 201 VNQYWDESQAIRACQVLGDNGI--DLIEQPISRINRSGQVRLNQRS----PAPIMADESI 254
Query: 314 RSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369
S+ D + + AS+ +K+AK G VL T QI +A +G+ L M+E + T
Sbjct: 255 ESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEA---AGIALYGGTMLEGSIGT 311
Query: 370 GFALHLAAGLGCIKY-VNLNTPFLLSED 396
+ H L + + L P LL+E+
Sbjct: 312 LASAHAFLTLRQLTWGTELFGPLLLTEE 339
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Catalyzes a syn cycloisomerization. Pseudomonas putida (taxid: 303) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q43931|CATB_ACIAD Muconate cycloisomerase 1 OS=Acinetobacter sp. (strain ADP1) GN=catB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 154/325 (47%), Gaps = 19/325 (5%)
Query: 82 PLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQTKALVKVREACQF----L 136
P L +++++ V I++ +G VGWGE + L G+++ VK F L
Sbjct: 17 PHKLSVTTMQTQTLVLIKIITEDGIVGWGEATTIGGLNYGEESPESVKANIDTYFKPLLL 76
Query: 137 RQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLS 195
P + L I + + G+ FA + ++ AL++ A +++P+ L GG + L
Sbjct: 77 SIKAPLNVAQTLKLIRKSINGNRFA--KCAIQTALLEIQAKRLNVPVSELLGGRIRDRLP 134
Query: 196 TAITIPAVSPAEASELASKYCKLG-FSTLKLNVGRN-ITADFDVLQAI-HAVHPHCSFIL 252
T+ + + A K +L +T KL +G N + D D + AI A+ P S +
Sbjct: 135 VLWTLASGDTDKDIAEAKKMIELKRHNTFKLKIGSNPLQHDVDHVIAIKKALGPEISVRV 194
Query: 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES 312
D N ++ E V+ + +L D G+ L EQP ++ L ++ AR + ++++ADE
Sbjct: 195 DVNRAWSELECVKGIQQLQDGGI--DLIEQPCAIENTDALARLT--AR--FDVAIMADEV 248
Query: 313 CRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGF 371
+ ++ +++ A V +K+ + G++ ++ K R +G+ L M+E + +
Sbjct: 249 LTGPDSAYRIAKKSGADVFAVKVEQSGGLIEACEVAKIARLAGISLYGGTMLEGPVGSIA 308
Query: 372 ALHLAAGLGCIKY-VNLNTPFLLSE 395
+ H + +++ L P LL++
Sbjct: 309 SAHAFSTFETLEFGTELFGPLLLTQ 333
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Catalyzes a syn cycloisomerization. Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|P51981|AEEP_ECOLI L-Ala-D/L-Glu epimerase OS=Escherichia coli (strain K12) GN=ycjG PE=1 SV=2 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 119/265 (44%), Gaps = 20/265 (7%)
Query: 134 QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG-GASN 192
Q + P +E+ +ILP + R ++ AL D A L L G
Sbjct: 61 QIMSVVPQLEKGLTREELQKILPA---GAARNALDCALWDLAARRQQQSLADLIGITLPE 117
Query: 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFIL 252
++ TA T+ +P + + AS + G LK+ + ++ ++ V AI P + I+
Sbjct: 118 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISERMV--AIRTAVPDATLIV 175
Query: 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES 312
DANE + +E L D+GV + EQP+ D + L NF + + + ADES
Sbjct: 176 DANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALE---NF---IHPLPICADES 227
Query: 313 CRSLNDVQKVMQENLASVVNIKLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGF 371
C + ++++ + + +VNIKL K G L L + R G LM+ M+ T A
Sbjct: 228 CHTRSNLKAL--KGRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 285
Query: 372 ALHLAAGLGCIKYVNLNTPFLLSED 396
AL L + + +L+ P L+ D
Sbjct: 286 ALPLVPQ---VSFADLDGPTWLAVD 307
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Catalyzes the epimerization of L-Ala-D-Glu to L-Ala-L-Glu and has a role in the recycling of the murein peptide, of which L-Ala-D-Glu is a component. Is also able to catalyze the reverse reaction and the epimerization of all the L-Ala-X dipeptides, except L-Ala-L-Arg, L-Ala-L-Lys and L-Ala-L-Pro. Is also active with L-Gly-L-Glu, L-Phe-L-Glu, and L-Ser-L-Glu, but not with L-Glu-L-Glu, L-Lys-L-Glu, L-Pro-L-Glu, L-Lys-L-Ala, or D-Ala-D-Ala. Escherichia coli (strain K12) (taxid: 83333) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P95608|CATB_RHOOP Muconate cycloisomerase 1 OS=Rhodococcus opacus GN=catB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 141/338 (41%), Gaps = 30/338 (8%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKALVKVREA 132
L+V L P +S+ + + V + G G+GE V P G+ + + + E
Sbjct: 14 LDVPLVRPHKFATTSMTAQPLLLVAVTTAGGVTGYGEGVVPGGPWWGGESVETMQAIVE- 72
Query: 133 CQFLRQSPPTTLNFALDEIARILPGSE-------FASVRAGVEMALIDAVANSIDIPLWR 185
R P L +DEI I+P E FA +A V++AL DA A S+ +P+
Sbjct: 73 ----RYIVPVLLGRGVDEITGIMPDIERVVANARFA--KAAVDVALHDAWARSLGVPVHT 126
Query: 186 LFGGASNSLSTAITIPAVSPA-----EASELASKYCKLGFSTLKLNVGRNITADFDVLQA 240
L GGA +PA EA +L F LK+ V+Q
Sbjct: 127 LLGGAFRKSVDVTWALGAAPAEEIIEEALDLVESKRHFSFK-LKMGALDPAVDTARVVQI 185
Query: 241 IHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
A+ +D N + A++ + +L + GV L EQP + L +++
Sbjct: 186 AQALQGKAGVRIDVNARWDRLTALKYVPRLVEGGV--ELIEQPTPGEQLEVLAELNRLVP 243
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSGLHLMI 359
+ V+ADES ++ +D +V + A V+ +K K G L + +++ + +G+
Sbjct: 244 ----VPVMADESVQTPHDALEVARRGAADVIALKTTKCGGLQKSREVVAIAKAAGIACHG 299
Query: 360 DGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSED 396
IE + T ++H A I + L P L SE+
Sbjct: 300 ATSIEGPIGTAASIHFACAEPGIDFGTELFGPLLFSEE 337
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Rhodococcus opacus (taxid: 37919) EC: 5 EC: . EC: 5 EC: . EC: 1 EC: . EC: 1 |
| >sp|O34514|MENC_BACSU o-succinylbenzoate synthase OS=Bacillus subtilis (strain 168) GN=menC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/319 (20%), Positives = 142/319 (44%), Gaps = 19/319 (5%)
Query: 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQ 122
+++++ L++ L P + +++ + + + ++G GWGEV+ P T +
Sbjct: 2 IEIEKITLYHLSMNLKKPFKNSIETLQERKFLIVEAIDTSGVTGWGEVSAFSSPWYTEET 61
Query: 123 TKALVKVREACQFLRQSPPTTLNF---ALDEIARILPGSEFASVRAGVEMALIDAVANSI 179
+ + + F+ N D +AR G+ A +AG+E A+ D A
Sbjct: 62 IGTCLHMLKDF-FIPNVVGREFNHPSEVPDSLAR-YKGNRMA--KAGLESAVWDIYAKKK 117
Query: 180 DIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQ 239
+ L GG + + + + + + Y K G+ +K+ + D ++++
Sbjct: 118 GVSLAEALGGTRDKVPAGVVVGLAPLDDMLKEIESYQKEGYQRIKIKI--QPGQDVELVK 175
Query: 240 AIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299
AI + P + DAN Y ++ + L +L+D ++ + EQP+ DD +
Sbjct: 176 AIRSRFPTIPLMADANSSYELKD-ISRLKELDDYHLM--MIEQPLQADDIVDHRHLQKHL 232
Query: 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLG-TLQIIKATRKSGLHLM 358
+ ++ DES S++D ++ ++ ++NIK ++ G L L+I ++ + +
Sbjct: 233 K----TAICLDESICSVDDARRAIELGSCKIINIKPSRVGGLTEALKIHDLCKEHHMQVW 288
Query: 359 IDGMIETRLATGFALHLAA 377
GM+ET ++ + LA+
Sbjct: 289 CGGMLETGISRAQNVALAS 307
|
Converts SHCHC to OSB. Bacillus subtilis (strain 168) (taxid: 224308) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 438 | ||||||
| 225456012 | 420 | PREDICTED: l-Ala-D/L-Glu epimerase [Viti | 0.849 | 0.885 | 0.675 | 1e-145 | |
| 297734245 | 401 | unnamed protein product [Vitis vinifera] | 0.849 | 0.927 | 0.675 | 1e-144 | |
| 255574332 | 453 | muconate cycloisomerase, putative [Ricin | 0.974 | 0.942 | 0.579 | 1e-139 | |
| 356512290 | 387 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.858 | 0.971 | 0.660 | 1e-138 | |
| 356525058 | 442 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.876 | 0.868 | 0.651 | 1e-138 | |
| 449439093 | 432 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.890 | 0.902 | 0.611 | 1e-137 | |
| 224118774 | 387 | predicted protein [Populus trichocarpa] | 0.849 | 0.961 | 0.630 | 1e-136 | |
| 449490070 | 438 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.860 | 0.860 | 0.622 | 1e-132 | |
| 449441724 | 439 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.860 | 0.858 | 0.622 | 1e-132 | |
| 357133316 | 442 | PREDICTED: l-Ala-D/L-Glu epimerase-like | 0.842 | 0.834 | 0.618 | 1e-130 |
| >gi|225456012|ref|XP_002277056.1| PREDICTED: l-Ala-D/L-Glu epimerase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/373 (67%), Positives = 293/373 (78%), Gaps = 1/373 (0%)
Query: 52 TSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGE 111
T+ GFKNL ETF VDVQRAEGR LNV L AP ++ S +E VENVAIR+EL NGCVGWGE
Sbjct: 44 TTFGFKNLIETFTVDVQRAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGCVGWGE 103
Query: 112 VAVVPLVTGD-QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMA 170
++P VT + Q A+ K E C+ LR+ P TL L EI LPG EFASVRAGVEMA
Sbjct: 104 GPILPFVTAENQATAMAKAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFASVRAGVEMA 163
Query: 171 LIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN 230
LIDAVANS+ IPLWRLFGG SN+++T ITIP VSPA+A+ELA+KY K GF TLKL VG+N
Sbjct: 164 LIDAVANSMGIPLWRLFGGVSNAITTDITIPIVSPADAAELATKYRKQGFKTLKLKVGKN 223
Query: 231 ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290
+ AD +VLQAI HP C FILDANEGYT +EA+EVL KL++MGV PVLFEQPVHRDDW
Sbjct: 224 LNADIEVLQAIRVAHPDCLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQPVHRDDWE 283
Query: 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKAT 350
GL VS ARD YG+SV ADESCRSL DV+K+++ NLA+V+NIKLAK GVLG L+II A
Sbjct: 284 GLGHVSKVARDKYGVSVAADESCRSLVDVKKIVEGNLANVINIKLAKVGVLGALEIIDAA 343
Query: 351 RKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYN 410
R +GL LMI GM+ETRLA GFA HLAAGLGC K+++L+TP LLSEDP G +VSGA+Y
Sbjct: 344 RAAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGYDVSGAVYK 403
Query: 411 FTNARGQGGFLKW 423
FTNARG GGFL W
Sbjct: 404 FTNARGHGGFLHW 416
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734245|emb|CBI15492.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 252/373 (67%), Positives = 293/373 (78%), Gaps = 1/373 (0%)
Query: 52 TSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGE 111
T+ GFKNL ETF VDVQRAEGR LNV L AP ++ S +E VENVAIR+EL NGCVGWGE
Sbjct: 7 TTFGFKNLIETFTVDVQRAEGRPLNVPLIAPFTIASSRLERVENVAIRIELKNGCVGWGE 66
Query: 112 VAVVPLVTGD-QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMA 170
++P VT + Q A+ K E C+ LR+ P TL L EI LPG EFASVRAGVEMA
Sbjct: 67 GPILPFVTAENQATAMAKAAEVCEVLRRRPAMTLGMLLGEIGEALPGHEFASVRAGVEMA 126
Query: 171 LIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN 230
LIDAVANS+ IPLWRLFGG SN+++T ITIP VSPA+A+ELA+KY K GF TLKL VG+N
Sbjct: 127 LIDAVANSMGIPLWRLFGGVSNAITTDITIPIVSPADAAELATKYRKQGFKTLKLKVGKN 186
Query: 231 ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290
+ AD +VLQAI HP C FILDANEGYT +EA+EVL KL++MGV PVLFEQPVHRDDW
Sbjct: 187 LNADIEVLQAIRVAHPDCLFILDANEGYTPKEAIEVLEKLHEMGVTPVLFEQPVHRDDWE 246
Query: 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKAT 350
GL VS ARD YG+SV ADESCRSL DV+K+++ NLA+V+NIKLAK GVLG L+II A
Sbjct: 247 GLGHVSKVARDKYGVSVAADESCRSLVDVKKIVEGNLANVINIKLAKVGVLGALEIIDAA 306
Query: 351 RKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYN 410
R +GL LMI GM+ETRLA GFA HLAAGLGC K+++L+TP LLSEDP G +VSGA+Y
Sbjct: 307 RAAGLDLMIGGMVETRLAMGFAGHLAAGLGCFKFIDLDTPLLLSEDPVQEGYDVSGAVYK 366
Query: 411 FTNARGQGGFLKW 423
FTNARG GGFL W
Sbjct: 367 FTNARGHGGFLHW 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574332|ref|XP_002528080.1| muconate cycloisomerase, putative [Ricinus communis] gi|223532541|gb|EEF34330.1| muconate cycloisomerase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 262/452 (57%), Positives = 318/452 (70%), Gaps = 25/452 (5%)
Query: 1 MVPVGSALFSPTCNFFFSPCV-----------SRSLHRSQNVIKFCVSNVMAETTTVRTS 49
M P+G AL T FF S V ++ + ++ + + S +MA++T TS
Sbjct: 1 MAPIGFALCPKTSIFFPSSNVEERVSGNYLYANKHISKTGVIASYGGSKLMAQSTVTTTS 60
Query: 50 ERT-----------SLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAI 98
+ + GFKNL ETFWVDVQRAEGR LN+ L APLS+G SVE VENVAI
Sbjct: 61 STSVSTSSRSSERTNFGFKNLAETFWVDVQRAEGRPLNLELIAPLSVGSKSVEEVENVAI 120
Query: 99 RVELSNGCVGWGEVAVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALDEIARILPG 157
RVEL+NGCVGWGEV V P VT + T AL K EAC+FL S P L+ L EI ILPG
Sbjct: 121 RVELTNGCVGWGEVPVFPSVTAVNHTVALAKAMEACEFLSCSSPMVLSLVLSEIGGILPG 180
Query: 158 SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEA-SELASKYC 216
E ASVRAGVEMALIDAVANSID+PLWRLFGG +N+L+T +T+P V PAEA S+ ASKYC
Sbjct: 181 PELASVRAGVEMALIDAVANSIDVPLWRLFGGVANTLTTGVTLPTVFPAEAYSQGASKYC 240
Query: 217 KLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276
+ GF T KL +G+N +A+ LQAI A HP CS ILDANE YT +EA+E+L KL D G+
Sbjct: 241 QSGFRTFKLKIGKNTSAEIKALQAIQAAHPLCSLILDANEAYTCQEAIEILQKLYDSGIT 300
Query: 277 PVLFEQPVHRDDWSGLHDVSNFARDT-YGISVVADESCRSLNDVQKVMQENLASVVNIKL 335
P + EQPVHR DW GL +VSNFAR+ YGISV DE+C+SL +V++V++ENLA +NIKL
Sbjct: 301 PAVLEQPVHRSDWKGLGEVSNFAREKKYGISVAVDETCQSLIEVRRVIKENLADAINIKL 360
Query: 336 AKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSE 395
AKFGV+G L+II+ R+SG+ LMI G +E+RLATGFA HLAAGLGC K V L+ PFLLSE
Sbjct: 361 AKFGVMGALEIIELARESGVKLMISGTVESRLATGFAAHLAAGLGCFKSVVLDMPFLLSE 420
Query: 396 DPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427
DP + G E SG +Y F N RGQGGFLKW S
Sbjct: 421 DPVICGYEASGPVYKFLNVRGQGGFLKWDFSS 452
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512290|ref|XP_003524853.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 249/377 (66%), Positives = 293/377 (77%), Gaps = 1/377 (0%)
Query: 48 TSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCV 107
T+ + GFKNL ETF VDV RAE R LNV L AP ++ S ++ VENVAIRVELSNG V
Sbjct: 7 TAAAITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLDKVENVAIRVELSNGAV 66
Query: 108 GWGEVAVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAG 166
GWGE ++P VT DQT A+VK EAC FLR+ P TL L EIA ILPG +FAS RAG
Sbjct: 67 GWGEAPILPFVTAEDQTTAMVKASEACAFLRKCPALTLGSMLGEIAGILPGHQFASARAG 126
Query: 167 VEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226
+EMA+IDAVANSI +PLWRLFGGASN+++T ITIP VSPAEA+ELASKY K GF TLKL
Sbjct: 127 IEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYYKEGFKTLKLK 186
Query: 227 VGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286
VG+N+ AD +VLQAI HP C FILDANEGY SEEAV+VL KL+DMG+ PVLFEQPVHR
Sbjct: 187 VGKNLNADIEVLQAIRVAHPKCQFILDANEGYNSEEAVDVLEKLHDMGLTPVLFEQPVHR 246
Query: 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQI 346
DDW GL V N AR+ YG+SV ADESCRS+ DV K+++ N+ V+NIKLAK GV+G L+I
Sbjct: 247 DDWDGLRYVGNIARERYGVSVAADESCRSIIDVYKIVEGNVLDVINIKLAKVGVMGALEI 306
Query: 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
I+ + +GL LMI GM+ETRLA GFA LAAGLGC K+++L+TP LLS+DP + G EVSG
Sbjct: 307 IEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDDPVLEGYEVSG 366
Query: 407 AIYNFTNARGQGGFLKW 423
A Y FTNARG GGFL W
Sbjct: 367 ATYKFTNARGHGGFLHW 383
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525058|ref|XP_003531144.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/387 (65%), Positives = 295/387 (76%), Gaps = 3/387 (0%)
Query: 38 NVMAETTTVRTSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVA 97
+MA T T+ + GFKNL ETF VDV RAE R LNV L AP ++ S + VENVA
Sbjct: 54 KIMASATP--TAAPITFGFKNLLETFTVDVHRAENRPLNVPLIAPFTIATSRLAKVENVA 111
Query: 98 IRVELSNGCVGWGEVAVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALDEIARILP 156
IRVELSNG VGWGE ++P VT DQT A+ K EAC FLR+ P TL L EIA ILP
Sbjct: 112 IRVELSNGSVGWGEAPILPFVTAEDQTTAMAKASEACAFLRRCPALTLGSMLGEIAGILP 171
Query: 157 GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYC 216
G +FASVRAG+EMA+IDAVANSI +PLWRLFGGASN+++T ITIP VSPAEA+ELASKY
Sbjct: 172 GHQFASVRAGMEMAIIDAVANSIRVPLWRLFGGASNTITTDITIPIVSPAEAAELASKYY 231
Query: 217 KLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276
K GF TLKL VG+N+ AD +VLQAI HP C FILDANEGY SEEAVEVL KL+DM +
Sbjct: 232 KEGFKTLKLKVGKNLNADIEVLQAIRVAHPECQFILDANEGYNSEEAVEVLEKLHDMRLT 291
Query: 277 PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336
PVLFEQPVHRDDW GL V N AR+ YG+SV ADESCRS+ DV K+++ N+ V+NIKLA
Sbjct: 292 PVLFEQPVHRDDWDGLRYVGNIARERYGVSVAADESCRSIVDVYKIVEGNVLDVINIKLA 351
Query: 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSED 396
K GV+G L+II+ + +GL LMI GM+ETRLA GFA LAAGLGC K+++L+TP LLS+D
Sbjct: 352 KVGVMGALEIIEKAKAAGLDLMIGGMVETRLAMGFAGQLAAGLGCFKFIDLDTPLLLSDD 411
Query: 397 PFVGGCEVSGAIYNFTNARGQGGFLKW 423
P + G EVSGA Y FTNARG GGFL W
Sbjct: 412 PVLEGYEVSGATYKFTNARGHGGFLHW 438
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439093|ref|XP_004137322.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] gi|449497562|ref|XP_004160436.1| PREDICTED: LOW QUALITY PROTEIN: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/394 (61%), Positives = 306/394 (77%), Gaps = 4/394 (1%)
Query: 31 VIKFCVSNVMAETTTVRTSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSV 90
+++ CV +MA + R SLGFKNL ETF V+VQRAE R LNV L P ++ S +
Sbjct: 37 ILRLCV-KIMAAAAPADS--RNSLGFKNLMETFTVNVQRAENRTLNVPLIEPFTIASSRL 93
Query: 91 ENVENVAIRVELSNGCVGWGEVAVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALD 149
E VENVAIR+ELSNGCVGWGE ++P VT DQ+ A+ K E C+ LRQ PP+TL A+
Sbjct: 94 EMVENVAIRIELSNGCVGWGEAPILPFVTAEDQSTAMAKAEEVCELLRQRPPSTLGSAMM 153
Query: 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEAS 209
+I+ LPG EFASVRAGVEMALIDAVANSI+IPLW+LFGG S+S++T ITIP S + A+
Sbjct: 154 QISETLPGHEFASVRAGVEMALIDAVANSINIPLWKLFGGVSDSITTDITIPITSASNAA 213
Query: 210 ELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK 269
+LA+KY GF TLKL VG+++ +D +VL++I VHP C FILDANEGY +EEA++VL K
Sbjct: 214 KLAAKYRDQGFKTLKLKVGKDLKSDIEVLKSIRMVHPDCEFILDANEGYDTEEAIQVLEK 273
Query: 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLAS 329
L+++GV P LFEQPVHRD+W GL +VS ARD YG+SV ADESCRS++DV+++++ +LA
Sbjct: 274 LHELGVTPTLFEQPVHRDNWEGLGNVSRVARDKYGVSVAADESCRSVDDVKRIVEGDLAD 333
Query: 330 VVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT 389
V+NIKLAK GVLG ++II+ R SGL LMI GM+ETRLA GF+ HLAAGLGC KY++L+T
Sbjct: 334 VINIKLAKVGVLGAIEIIEVARGSGLSLMIGGMVETRLAMGFSGHLAAGLGCFKYIDLDT 393
Query: 390 PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKW 423
P LLSEDP GG EVSGA+Y FTN++G GG+L W
Sbjct: 394 PLLLSEDPVHGGYEVSGAVYKFTNSQGHGGYLHW 427
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118774|ref|XP_002317902.1| predicted protein [Populus trichocarpa] gi|222858575|gb|EEE96122.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/373 (63%), Positives = 291/373 (78%), Gaps = 1/373 (0%)
Query: 52 TSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGE 111
++ F++L ETF VDV+RAE R LNV L AP ++ S ++ VENVAIR+ELS+GCVGWGE
Sbjct: 10 STFEFRDLMETFAVDVKRAENRPLNVPLIAPFTIASSRLDKVENVAIRIELSDGCVGWGE 69
Query: 112 VAVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMA 170
++P VT DQ+ A++K REAC+ L+ S L L+ ++ ILPG EFASVRAGVEMA
Sbjct: 70 APILPFVTAEDQSTAMIKAREACELLKNSSSMKLGLVLERVSEILPGHEFASVRAGVEMA 129
Query: 171 LIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN 230
LIDAVA SI++PLW LFGGAS+S++T ITIP VS AEA+ELASKY K GF TLKL VG+N
Sbjct: 130 LIDAVAKSINVPLWILFGGASDSITTDITIPIVSSAEAAELASKYRKQGFQTLKLKVGKN 189
Query: 231 ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290
+ D +VLQAI AVHP C FILDANEGY EEA+EVL +L+ MGV P+LFEQPVHRDDW
Sbjct: 190 LKEDIEVLQAIRAVHPDCLFILDANEGYKPEEAIEVLEELHKMGVTPILFEQPVHRDDWE 249
Query: 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKAT 350
GL V++ A+ YG+SV ADESCRSL D +++++ NLA V+NIKLAK GV+G L+II+
Sbjct: 250 GLGHVTHIAKGKYGVSVAADESCRSLVDAKRIIKGNLADVINIKLAKVGVVGGLEIIEEA 309
Query: 351 RKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYN 410
R SGL LMI GM+ETRLA GFA HLAAG GC K+++L+TP LLSEDP + G EVSGA+Y
Sbjct: 310 RTSGLDLMIGGMVETRLAMGFAGHLAAGFGCFKFIDLDTPLLLSEDPVLEGYEVSGAVYK 369
Query: 411 FTNARGQGGFLKW 423
FT+A+G GFL W
Sbjct: 370 FTDAQGHAGFLDW 382
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449490070|ref|XP_004158499.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/381 (62%), Positives = 291/381 (76%), Gaps = 4/381 (1%)
Query: 48 TSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCV 107
+S+R S GF+N+ +TFWV+VQRAEGR L++ L++PL G S +E + NVAIRVELSNGCV
Sbjct: 53 SSQRLSFGFQNVADTFWVNVQRAEGRPLSIGLNSPLHFGNSKLETLNNVAIRVELSNGCV 112
Query: 108 GWGEVAVVPLVTGDQT--KALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRA 165
GWGEV V+P VT D T AL K +E C FL ++PP TL D++ +L EFA +RA
Sbjct: 113 GWGEVQVLPSVT-DVTLEMALAKAQEVCNFLLRTPPATLTSVFDDVTALLSPREFAPIRA 171
Query: 166 GVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKL 225
GVEMALIDAVANSI +PLWRLFGG +++L+T IT+P +SP EAS LASKY GF TLKL
Sbjct: 172 GVEMALIDAVANSISVPLWRLFGGVTSTLTTVITVPILSPEEASILASKYYNQGFETLKL 231
Query: 226 NVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285
VG+N A+ ++AIHA P CSF+ DANEGYT +EA++ L KL D+G++P++FEQPV
Sbjct: 232 VVGKNFAAEIAAIEAIHAAQPCCSFMFDANEGYTPDEAIKFLEKLKDVGIVPLVFEQPVD 291
Query: 286 RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQ 345
RDDW GLH+VSN AR TYGI V DESCRSL DV K++ +NL +NIKL KFGVLG L+
Sbjct: 292 RDDWKGLHEVSNVAR-TYGIPVAVDESCRSLTDVWKIIDKNLVDAINIKLPKFGVLGALE 350
Query: 346 IIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVS 405
II RKSGL LM+D M ETRLATGFA HLAAG+GC KY+ L+TP LL+EDP VGG E S
Sbjct: 351 IINLARKSGLILMVDSMAETRLATGFAGHLAAGVGCFKYIVLDTPLLLAEDPVVGGYEAS 410
Query: 406 GAIYNFTNARGQGGFLKWTIV 426
GA+Y F NARGQGGFL W ++
Sbjct: 411 GAVYKFNNARGQGGFLNWNLL 431
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441724|ref|XP_004138632.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/381 (62%), Positives = 291/381 (76%), Gaps = 4/381 (1%)
Query: 48 TSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCV 107
+S+R S GF+N+ +TFWV+VQRAEGR L++ L++PL G S +E + NVAIRVELSNGCV
Sbjct: 54 SSQRLSFGFQNVADTFWVNVQRAEGRPLSIGLNSPLHFGNSKLETLNNVAIRVELSNGCV 113
Query: 108 GWGEVAVVPLVTGDQT--KALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRA 165
GWGEV V+P VT D T AL K +E C FL ++PP TL D++ +L EFA +RA
Sbjct: 114 GWGEVQVLPSVT-DVTLEMALAKAQEVCNFLLRTPPATLTSVFDDVTALLSPREFAPIRA 172
Query: 166 GVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKL 225
GVEMALIDAVANSI +PLWRLFGG +++L+T IT+P +SP EAS LASKY GF TLKL
Sbjct: 173 GVEMALIDAVANSISVPLWRLFGGVTSTLTTVITVPILSPEEASILASKYYNQGFETLKL 232
Query: 226 NVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285
VG+N A+ ++AIHA P CSF+ DANEGYT +EA++ L KL D+G++P++FEQPV
Sbjct: 233 VVGKNFAAEIAAIEAIHAAQPCCSFMFDANEGYTPDEAIKFLEKLKDVGIVPLVFEQPVD 292
Query: 286 RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQ 345
RDDW GLH+VSN AR TYGI V DESCRSL DV K++ +NL +NIKL KFGVLG L+
Sbjct: 293 RDDWKGLHEVSNVAR-TYGIPVAVDESCRSLTDVWKIIDKNLVDAINIKLPKFGVLGALE 351
Query: 346 IIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVS 405
II RKSGL LM+D M ETRLATGFA HLAAG+GC KY+ L+TP LL+EDP VGG E S
Sbjct: 352 IINLARKSGLILMVDSMAETRLATGFAGHLAAGVGCFKYIVLDTPLLLAEDPVVGGYEAS 411
Query: 406 GAIYNFTNARGQGGFLKWTIV 426
GA+Y F NARGQGGFL W ++
Sbjct: 412 GAVYKFNNARGQGGFLNWNLL 432
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357133316|ref|XP_003568272.1| PREDICTED: l-Ala-D/L-Glu epimerase-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/370 (61%), Positives = 280/370 (75%), Gaps = 1/370 (0%)
Query: 53 SLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEV 112
+ GF+ L ETF VDV AE R L+V L+AP ++ S +E+V NVA+RVELS+G VGWGE
Sbjct: 64 TFGFEALKETFSVDVSAAEARPLDVPLAAPFTIASSRLESVSNVAVRVELSSGAVGWGEA 123
Query: 113 AVVPLVTG-DQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMAL 171
V+P VT DQ AL V AC L +P L L+++A LPG FAS RAGVEMA+
Sbjct: 124 PVLPSVTAEDQPAALAAVGRACAKLAGAPSAPLGAVLEDVAAALPGHAFASARAGVEMAV 183
Query: 172 IDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNI 231
IDAVANSI +PLWRLFGGASNS++T ITIP V+P EA++LA+KY GF TLKL VG+N+
Sbjct: 184 IDAVANSIRVPLWRLFGGASNSVTTDITIPIVTPNEAAQLAAKYRGQGFQTLKLKVGKNL 243
Query: 232 TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
+D +VL+AI VHP CSFILDANEGYT+ +A+EVL +LN+MGV PVLFEQPVHRDDW G
Sbjct: 244 NSDIEVLKAIRLVHPDCSFILDANEGYTANQAIEVLDRLNEMGVTPVLFEQPVHRDDWEG 303
Query: 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATR 351
L DVS A + Y ++V ADESCR L D QK++ NL+ V+NIKLAK GVLG L++I A R
Sbjct: 304 LRDVSTAAMEKYRVAVAADESCRGLLDAQKIINGNLSHVINIKLAKLGVLGALEVIDAAR 363
Query: 352 KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNF 411
K+G+ LMI GM+ETR+A GFA HLAAGLGC +++L+TP LLSEDP GG E SG +Y F
Sbjct: 364 KAGIALMIGGMVETRIAMGFAGHLAAGLGCFSFIDLDTPLLLSEDPVYGGYEASGPLYKF 423
Query: 412 TNARGQGGFL 421
TNARG GGFL
Sbjct: 424 TNARGHGGFL 433
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 438 | ||||||
| UNIPROTKB|Q81PF7 | 350 | BAS2659 "Mandelate racemase/mu | 0.705 | 0.882 | 0.304 | 5.2e-33 | |
| TIGR_CMR|BA_2850 | 350 | BA_2850 "mandelate racemase/mu | 0.705 | 0.882 | 0.304 | 5.2e-33 | |
| TIGR_CMR|BA_0339 | 369 | BA_0339 "mandelate racemase/mu | 0.671 | 0.796 | 0.213 | 2.3e-17 | |
| UNIPROTKB|Q4K9X1 | 382 | catB "Muconate cycloisomerase" | 0.680 | 0.780 | 0.261 | 1e-13 | |
| UNIPROTKB|Q71WQ8 | 374 | LMOf2365_2493 "N-acylamino aci | 0.607 | 0.711 | 0.255 | 1.6e-13 | |
| UNIPROTKB|P27099 | 370 | tcbD "Chloromuconate cycloisom | 0.664 | 0.786 | 0.248 | 7.5e-13 | |
| TIGR_CMR|SPO_1594 | 368 | SPO_1594 "mandelate racemase/m | 0.618 | 0.736 | 0.262 | 4.8e-12 | |
| UNIPROTKB|P51981 | 321 | ycjG "L-Ala-D/L-Glu epimerase" | 0.623 | 0.850 | 0.27 | 1.4e-11 | |
| TIGR_CMR|SPO_1595 | 367 | SPO_1595 "mandelate racemase/m | 0.630 | 0.752 | 0.238 | 3.9e-11 | |
| UNIPROTKB|Q81K98 | 368 | BAS4746 "N-acylamino acid race | 0.621 | 0.739 | 0.244 | 4.1e-10 |
| UNIPROTKB|Q81PF7 BAS2659 "Mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 100/328 (30%), Positives = 163/328 (49%)
Query: 90 VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQF-LRQS--PPTTLNF 146
V +E++ + + G VG G A P++TGD + EA +R S + F
Sbjct: 26 VTEIESIDVYIHTDEGIVGKGAGAATPVITGDFANG---IEEAILGPMRSSLIGQDIIQF 82
Query: 147 A--LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVS 204
L I G+ S +A V++AL D +IPL+ L GG + T IT+
Sbjct: 83 QQLLQHIQMSCIGNP--SAKAAVDIALYDVYCQYHNIPLYALLGG-KKEIHTDITLSVDE 139
Query: 205 PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGYTSEEA 263
P ++ A ++ + GF TLK+ VG++ D + ++AI ++V + + LDAN+G+ +EA
Sbjct: 140 PFIMAKEAKQHVEKGFQTLKIKVGKSAHLDLERIEAIRNSVPKNTTLRLDANQGWNPKEA 199
Query: 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323
V ++ ++ + + EQPVH DW GL + +D ++ADES S +D K++
Sbjct: 200 VSIIKEMENRNLNIEFIEQPVHAKDWDGL----KYVKDHVQTPIMADESIFSASDALKIV 255
Query: 324 QENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382
Q ++NIKL K G+ +I +G+ M+ M+E+ L+ HLAA I
Sbjct: 256 QGRYVDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLSVSAVAHLAAAHPNI 315
Query: 383 KYVNLNTPFLLSEDPFVGGCEVSGAIYN 410
Y +L+ P L E+P G SG+ N
Sbjct: 316 HYFDLDAPLWLMEEP--EGMTYSGSKVN 341
|
|
| TIGR_CMR|BA_2850 BA_2850 "mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 100/328 (30%), Positives = 163/328 (49%)
Query: 90 VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQF-LRQS--PPTTLNF 146
V +E++ + + G VG G A P++TGD + EA +R S + F
Sbjct: 26 VTEIESIDVYIHTDEGIVGKGAGAATPVITGDFANG---IEEAILGPMRSSLIGQDIIQF 82
Query: 147 A--LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVS 204
L I G+ S +A V++AL D +IPL+ L GG + T IT+
Sbjct: 83 QQLLQHIQMSCIGNP--SAKAAVDIALYDVYCQYHNIPLYALLGG-KKEIHTDITLSVDE 139
Query: 205 PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGYTSEEA 263
P ++ A ++ + GF TLK+ VG++ D + ++AI ++V + + LDAN+G+ +EA
Sbjct: 140 PFIMAKEAKQHVEKGFQTLKIKVGKSAHLDLERIEAIRNSVPKNTTLRLDANQGWNPKEA 199
Query: 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323
V ++ ++ + + EQPVH DW GL + +D ++ADES S +D K++
Sbjct: 200 VSIIKEMENRNLNIEFIEQPVHAKDWDGL----KYVKDHVQTPIMADESIFSASDALKIV 255
Query: 324 QENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382
Q ++NIKL K G+ +I +G+ M+ M+E+ L+ HLAA I
Sbjct: 256 QGRYVDLINIKLMKCSGIREAWRIADIAEAAGVKCMVGSMMESSLSVSAVAHLAAAHPNI 315
Query: 383 KYVNLNTPFLLSEDPFVGGCEVSGAIYN 410
Y +L+ P L E+P G SG+ N
Sbjct: 316 HYFDLDAPLWLMEEP--EGMTYSGSKVN 341
|
|
| TIGR_CMR|BA_0339 BA_0339 "mandelate racemase/muconate lactonizing enzyme family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 67/314 (21%), Positives = 153/314 (48%)
Query: 92 NVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA---LVKVREACQFLRQSPPTTLNFAL 148
++ ++ +++E G +G+GE VTG+ ++ ++K A + Q+P +N +
Sbjct: 28 DMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHILKHTLAPALIGQNP---MN--I 82
Query: 149 DEIARILPGSEFA--SVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVS-P 205
++I ++ + + + +A +++A D + ++ P+++L GG + + +++ P
Sbjct: 83 EKIHDMMDNTIYGVPTAKAAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPITHVLSIADP 142
Query: 206 AEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAV 264
E +E A+ + G+ + K+ VG N+ D ++A+ V + +D N+G+ + +
Sbjct: 143 EEMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGW--KNSA 200
Query: 265 EVLGKLNDMGVIPV-LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323
L L +G + + EQPV DD + + R + ++ DE + ++++++
Sbjct: 201 NTLMALRSLGHLNIDWIEQPVIADDIDAMAHI----RSKTDLPLMIDEGLKGSREMRQII 256
Query: 324 QENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382
+ A VNIKL K G + +++ +G+ + M+E+ +A+ H+A I
Sbjct: 257 NLDAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFSKKII 316
Query: 383 KYVNLNTPFLLSED 396
V L P ++D
Sbjct: 317 TSVELTGPLKFTKD 330
|
|
| UNIPROTKB|Q4K9X1 catB "Muconate cycloisomerase" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 83/318 (26%), Positives = 144/318 (45%)
Query: 90 VENVENVAIRVELSNGCVGWGEVAVVP-LVTGDQTKALVKV---REACQFLRQSPPTTLN 145
++N V IR+ ++G G GE + L G+++ +K R L + +N
Sbjct: 29 MQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPDSIKTNIDRFVAPLLIGQDASNIN 88
Query: 146 FALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG-ASNSLSTAITIPAVS 204
A+ + + + G+ FA ++G+E AL+DA + +P+ L GG ++L A T+ +
Sbjct: 89 AAMLRLEQSIRGNTFA--KSGIESALLDAQGKRLGLPVSELLGGRVRDALPVAWTLASGD 146
Query: 205 PAEASELASKYCKLGFSTL-KLNVGRNITADFDVLQAI---HAVHPHCSFILDANEGYTS 260
A+ A K L + KL +G D D+ I A+ S +D N+ +
Sbjct: 147 TAKDIAEAQKMLDLRRHRIFKLKIGAG-EVDRDLAHVIAIKKALGDSASVRVDVNQAWDE 205
Query: 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ 320
A+ L G+ L EQP+ R++ +G+ + N + ++ADES + D
Sbjct: 206 AVALRACRILGGNGID--LIEQPISRNNRAGMVRL-NASSPA---PIMADESIECVEDAF 259
Query: 321 KVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379
+ +E ASV +K+AK G TL+ +G+ L M+E + T + H L
Sbjct: 260 NLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHAFLTL 319
Query: 380 GCIKY-VNLNTPFLLSED 396
+ + L P LL+ED
Sbjct: 320 NKLSWDTELFGPLLLTED 337
|
|
| UNIPROTKB|Q71WQ8 LMOf2365_2493 "N-acylamino acid racemase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 73/286 (25%), Positives = 134/286 (46%)
Query: 100 VELSN--GCVGWGEVAVVPL--VTGDQTKALVKV--REACQFLRQSPPTTLNFALDEIAR 153
+EL N G G+GE+ PL T + + + + L Q T ++++
Sbjct: 34 IELVNEEGIRGYGELEAFPLPDYTEETLGTAISIIKQHLLPILAQKEIRTPE-EVNQMFS 92
Query: 154 ILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEAS-ELA 212
+ G+E A +A VE+A+ DA A + + L ++ G +S++ ++I AEA +L
Sbjct: 93 WIQGNEMA--KAAVELAVWDAFAKNEKLSLAKMIGAKKDSIAVGVSIGVQHSAEALVQLV 150
Query: 213 SKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND 272
S+Y G+ +KL + D ++A+ P+ S + DAN Y E+ + +L +L+
Sbjct: 151 SQYMDEGYERVKLKIAPK--KDIQFVKAVREKFPNLSLMADANSAYNREDFL-LLKELDH 207
Query: 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332
+ + EQP D+ H + + + DE+ RSL+D+++ VN
Sbjct: 208 FNL--EMIEQPFGTKDFVE-HA---WLQKKLKTRICLDENIRSLDDLKQAHMLGSCQAVN 261
Query: 333 IKLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+KLA+ G + L+I + + L + GM+E + + LAA
Sbjct: 262 LKLARVGGMSEALKIARYCSDNNLLVWCGGMLEAGIGRAHNIALAA 307
|
|
| UNIPROTKB|P27099 tcbD "Chloromuconate cycloisomerase" [Pseudomonas sp. P51 (taxid:65067)] | Back alignment and assigned GO terms |
|---|
Score = 195 (73.7 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 77/310 (24%), Positives = 149/310 (48%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVT-GDQTKALVKV---REACQFLRQSPPTTLNFALDEI 151
V ++V+ + G VG GE V T G ++ +KV L + L+ A +
Sbjct: 32 VIVQVK-AGGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKDASNLSQARVLM 90
Query: 152 ARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-SLSTAITIPAVSPAEASE 210
R + G+ S +A +++AL D A ++++ + L GG S+ A T+ + A +
Sbjct: 91 DRAVTGN--LSAKAAIDIALHDLKARALNLSIADLIGGTMRTSIPIAWTLASGDTARDID 148
Query: 211 LASKYCKLG-FSTLKLNVGRNITA-DFDVLQAI-HAVHPHCSFILDANEGYTSEEAVEVL 267
A + + + K+ +G A D + +++I AV S +D N+G+ + A +
Sbjct: 149 SALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWI 208
Query: 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327
+L + GV L EQPV R ++ L ++ + G++++ADES SL+ ++ +++
Sbjct: 209 PRLEEAGV--ELVEQPVPRANFGALRRLT----EQNGVAILADESLSSLSSAFELARDHA 262
Query: 328 ASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY-V 385
++KL G + TL++ +G+ M+++ + T ALH+ A L + Y
Sbjct: 263 VDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGC 322
Query: 386 NLNTPFLLSE 395
L P++L +
Sbjct: 323 ELIGPWVLGD 332
|
|
| TIGR_CMR|SPO_1594 SPO_1594 "mandelate racemase/muconate lactonizing enzyme, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 78/297 (26%), Positives = 134/297 (45%)
Query: 91 ENVENVAIRVELSNGCVGWGEVA-----VVPLVTGDQTKALVKVREACQFLRQSPPTTLN 145
E ++ +++E G GWGE VP G +A ++ A L P L+
Sbjct: 29 ELLDATLVKLETDAGITGWGEGTPWGHTYVP-AHGPGIRAGIETM-APFVLGLDPRRLLD 86
Query: 146 F--ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNS-LSTAITIPA 202
A+D IA LPG +A ++ ++MA D + +P+ L GG S + A ++ A
Sbjct: 87 VERAMD-IA--LPGHLYA--KSPIDMACWDIAGQAAGLPIADLMGGGSRTPRPIASSVGA 141
Query: 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFIL-DANEGYTSE 261
S E + +Y + G+ + +G ++ D ++ + + +L D N G+T +
Sbjct: 142 KSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVEDIRKPGEIVLYDVNRGWTRQ 201
Query: 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321
+A+ V+ D+ V +FEQP L D++ R + V DE +L D +
Sbjct: 202 QALRVMRATEDLHV---MFEQPGET-----LDDIAAI-RPLHSAPVSVDECLVTLQDAAR 252
Query: 322 VMQENLASVVNIKLAKFGVLGTLQIIKATRKS-GLHLMIDGMIETRLATGFALHLAA 377
V ++ LA V IKL + G L ++ + G+ + + + LA ALHLAA
Sbjct: 253 VARDGLAEVFGIKLNRVGGLTRAARMRDIALAHGIDMFVMATGGSVLADAEALHLAA 309
|
|
| UNIPROTKB|P51981 ycjG "L-Ala-D/L-Glu epimerase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 81/300 (27%), Positives = 132/300 (44%)
Query: 100 VELSN-GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGS 158
VEL G G GE P G+ +++ Q + P +E+ +ILP
Sbjct: 32 VELEEEGIKGTGECTPYPRY-GESDASVM-----AQIMSVVPQLEKGLTREELQKILPAG 85
Query: 159 EFASVRAGVEMALIDAVANSIDIPLWRLFG-GASNSLSTAITIPAVSPAEASELASKYCK 217
+ R ++ AL D A L L G ++ TA T+ +P + + AS +
Sbjct: 86 ---AARNALDCALWDLAARRQQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQ 142
Query: 218 LGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277
G LK+ + ++ ++ V AI P + I+DANE + +E L D+GV
Sbjct: 143 AGAKLLKVKLDNHLISERMV--AIRTAVPDATLIVDANESWRAEGLAARCQLLADLGV-- 198
Query: 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337
+ EQP+ D + L NF + + + ADESC + ++++ + + +VNIKL K
Sbjct: 199 AMLEQPLPAQDDAALE---NFI---HPLPICADESCHTRSNLKAL--KGRYEMVNIKLDK 250
Query: 338 FGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSED 396
G L L + R G LM+ M+ T A AL L + + +L+ P L+ D
Sbjct: 251 TGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQ---VSFADLDGPTWLAVD 307
|
|
| TIGR_CMR|SPO_1595 SPO_1595 "mandelate racemase/muconate lactonizing enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 70/293 (23%), Positives = 126/293 (43%)
Query: 91 ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK-VREACQFLRQSPPTTLNFALD 149
+ VE V I V+ G GWGEV +P + + + E + + P + ++
Sbjct: 28 DTVETVVIAVQTDTGITGWGEVCPIPHYLPAYARGVAPALTELAPVILGADPVGVGALME 87
Query: 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG-ASNSLSTAITIPAVSPAEA 208
+ +L G +A ++ +++AL D +PL L GG + + +I ++P +
Sbjct: 88 RVDAVLHGHPYA--KSALDIALWDITGQVAGLPLHALLGGWRAADMPLYHSITCIAPDDM 145
Query: 209 SELASKYCKLGFSTLKLNVGRNITADFDV--LQAIH-AVHPHCSFILDANEGYTSEEAVE 265
+ +A + G + ++ +G + DV L + AV P D N G TS EA+
Sbjct: 146 ARIAREAQAQGITQFQVKLGASGDWQTDVERLAKVREAVGPGPLVYGDWNCGATSLEAIR 205
Query: 266 VLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325
V G+ + + ++ EQP + L D + R T G+ + DE + +
Sbjct: 206 V-GRA--VAQLDIMLEQPC-----ATLEDCARVQRAT-GLPMKIDELAHDTASLLTAHRL 256
Query: 326 NLASVVNIKLAKFGVLGTLQIIK-ATRKSGLHLMIDGMIETRLATGFALHLAA 377
+ V +KL+KFG L T + + G + I+ + + T LHL A
Sbjct: 257 GIMDAVALKLSKFGGLSTTRRARDLCLHLGARMCIEDTWGSDITTAALLHLGA 309
|
|
| UNIPROTKB|Q81K98 BAS4746 "N-acylamino acid racemase" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 72/295 (24%), Positives = 129/295 (43%)
Query: 91 ENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKALVKVREACQFLRQSPPTTLNFAL 148
E E++ I +E +G +G+GEV P T + K + V + FL P L +
Sbjct: 27 EKRESIVIELEDEDGYIGFGEVVAFSEPWYTEETVKTALHVLQ--DFLL---PDLLKAEI 81
Query: 149 ---DEIARILPG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVS 204
+E+ + +AG+E A+ D A L L GG + + + I +
Sbjct: 82 SHPNEVPSLFQHIKRNRMAKAGIEGAVWDLYAKRQKKSLATLLGGTKSEIEVGVVIGINT 141
Query: 205 -PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEA 263
P ++ KY + G+ K+ + D+++L+ I PH + DAN YT +
Sbjct: 142 IPVMLKQI-EKYAEEGYERFKVKIKPG--HDYELLKEIRKEFPHIPLMADANSAYTLADT 198
Query: 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323
E L +L++ ++ + EQP+ D+ L D + + + DES SL D + +
Sbjct: 199 -ESLKRLDEFQLM--MIEQPLA--DYDFL-DHAQLQKKIE-TPICLDESIHSLEDARVAI 251
Query: 324 QENLASVVNIKLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+VNIK + G L ++QI + + + GM+E ++ + LA+
Sbjct: 252 TLGSCQIVNIKPGRVGGLTESIQIHNYCMEHNIPVWCGGMVEMGISRAQNVALAS 306
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.2.1.11 | LOW CONFIDENCE prediction! |
| 3rd Layer | 4.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 438 | |||
| cd03319 | 316 | cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epi | 3e-88 | |
| COG4948 | 372 | COG4948, COG4948, L-alanine-DL-glutamate epimerase | 2e-44 | |
| cd03315 | 265 | cd03315, MLE_like, Muconate lactonizing enzyme (ML | 2e-39 | |
| cd03318 | 365 | cd03318, MLE, Muconate Lactonizing Enzyme (MLE), a | 9e-31 | |
| TIGR02534 | 368 | TIGR02534, mucon_cyclo, muconate and chloromuconat | 4e-26 | |
| cd03317 | 354 | cd03317, NAAAR, N-acylamino acid racemase (NAAAR), | 4e-25 | |
| cd00308 | 229 | cd00308, enolase_like, Enolase-superfamily, charac | 1e-22 | |
| cd03320 | 263 | cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) | 1e-22 | |
| cd03316 | 357 | cd03316, MR_like, Mandelate racemase (MR)-like sub | 6e-21 | |
| TIGR01928 | 324 | TIGR01928, menC_lowGC/arch, o-succinylbenzoate syn | 1e-17 | |
| smart00922 | 97 | smart00922, MR_MLE, Mandelate racemase / muconate | 8e-16 | |
| TIGR01927 | 307 | TIGR01927, menC_gamma/gm+, o-succinylbenzoate synt | 1e-14 | |
| PLN02980 | 1655 | PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ | 2e-13 | |
| PRK15129 | 321 | PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provi | 4e-12 | |
| cd03321 | 355 | cd03321, mandelate_racemase, Mandelate racemase (M | 4e-12 | |
| PRK02714 | 320 | PRK02714, PRK02714, O-succinylbenzoate synthase; P | 8e-12 | |
| pfam13378 | 111 | pfam13378, MR_MLE_C, Enolase C-terminal domain-lik | 3e-10 | |
| pfam01188 | 69 | pfam01188, MR_MLE, Mandelate racemase / muconate l | 2e-09 | |
| PRK02901 | 327 | PRK02901, PRK02901, O-succinylbenzoate synthase; P | 2e-07 | |
| cd03328 | 352 | cd03328, MR_like_3, Mandelate racemase (MR)-like s | 6e-07 | |
| cd03325 | 352 | cd03325, D-galactonate_dehydratase, D-galactonate | 4e-06 | |
| pfam02746 | 117 | pfam02746, MR_MLE_N, Mandelate racemase / muconate | 5e-06 | |
| cd03324 | 415 | cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS | 3e-05 | |
| PRK05105 | 322 | PRK05105, PRK05105, O-succinylbenzoate synthase; P | 0.004 |
| >gnl|CDD|239435 cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 3e-88
Identities = 111/324 (34%), Positives = 166/324 (51%), Gaps = 15/324 (4%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKALVKVRE 131
R + L P ++ S ENV + +EL G G+GE A P VTG+ L ++
Sbjct: 5 RPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKS 63
Query: 132 ACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS 191
L P L L+ + +LPG + RA V++AL D A + +PL++L+GG +
Sbjct: 64 VRPALIGGDPR-LEKLLEALQELLPG--NGAARAAVDIALWDLEAKLLGLPLYQLWGGGA 120
Query: 192 -NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSF 250
L T TI +P + A K K GF LK+ +G ++ D + ++AI P
Sbjct: 121 PRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREAAPDARL 180
Query: 251 ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310
+DAN+G+T EEAVE+L +L ++GV L EQPV D GL + RD + ++AD
Sbjct: 181 RVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYL----RDKSPLPIMAD 234
Query: 311 ESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLMIDGMIETRLAT 369
ESC S D ++ +NIKL K G+ L+I R +GL +M+ M+E+ L+
Sbjct: 235 ESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSI 294
Query: 370 GFALHLAAGLGCIKYVNLNTPFLL 393
A HLAA +V+L+ P LL
Sbjct: 295 AAAAHLAA--AKADFVDLDGPLLL 316
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 316 |
| >gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 2e-44
Identities = 85/357 (23%), Positives = 142/357 (39%), Gaps = 21/357 (5%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREA 132
+ V LS P +V V + + +G VGWGE + V +
Sbjct: 9 IPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARYGEEAEAVLLAPL 68
Query: 133 CQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN 192
+ L G + + V++AL D ++ +P+++L GG
Sbjct: 69 LIGRDPFDIERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVR 128
Query: 193 SLSTAITI---PAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAI-HAVHPH 247
A A+E A +LGF LKL VG D + ++A+ AV
Sbjct: 129 DEVRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALREAVGDD 188
Query: 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307
++DAN G+T EEA+ + L + G E+P+ DD GL ++ R +
Sbjct: 189 VRLMVDANGGWTLEEAIRLARALEEYG--LEWIEEPLPPDDLEGLREL----RAATSTPI 242
Query: 308 VADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETR 366
A ES + D +++++ +V LA+ G+ L+I A G +M+ +E
Sbjct: 243 AAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKI--AALAEGFGVMVGPHVEGP 300
Query: 367 LATGFALHLAAGLGCIKYVNLNTPFLLSEDP-----FVGGCEVSGAIYNFTNARGQG 418
++ ALHLAA L + +L P L++D V G + + + G G
Sbjct: 301 ISLAAALHLAAALP--NFGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLG 355
|
Length = 372 |
| >gnl|CDD|239431 cd03315, MLE_like, Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-39
Identities = 84/301 (27%), Positives = 127/301 (42%), Gaps = 58/301 (19%)
Query: 79 LSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQ 138
L PL ++ ++V +R+ +G VGW E
Sbjct: 10 LKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------- 44
Query: 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI 198
+A V+MAL D + +P++ L GG + + A
Sbjct: 45 -------------------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAH 79
Query: 199 TIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEG 257
+ PAE +E A + + GF T KL VGR+ D V+ A+ AV +DAN G
Sbjct: 80 MLGLGEPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDDAELRVDANRG 139
Query: 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLN 317
+T ++A+ L L D+G+ EQP+ DD L + AR T ++ADES + +
Sbjct: 140 WTPKQAIRALRALEDLGLD--YVEQPLPADD---LEGRAALARAT-DTPIMADESAFTPH 193
Query: 318 DVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376
D + + A VNIK AK G L +++ GL +M+ MIE+ L T HLA
Sbjct: 194 DAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLA 253
Query: 377 A 377
A
Sbjct: 254 A 254
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. Length = 265 |
| >gnl|CDD|239434 cd03318, MLE, Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-31
Identities = 86/317 (27%), Positives = 142/317 (44%), Gaps = 28/317 (8%)
Query: 96 VAIRVELSNGCVGWGEVAVV--PLVTGDQT---KALVKVREACQFLRQ----SPPTTLNF 146
V +R+ S+G VG GE P G+ KA++ ++L T +
Sbjct: 31 VLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIID-----RYLAPLLIGRDATNIGA 85
Query: 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSP 205
A+ + R + G+ FA +A +EMAL+DA + +P+ L GG +SL A T+ +
Sbjct: 86 AMALLDRAVAGNLFA--KAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDT 143
Query: 206 AEASELASKYCKLG-FSTLKLNVGRNITA-DFDVLQAIHAVHP-HCSFILDANEGYTSEE 262
A + + G KL +G A D ++AI S +D N+ +
Sbjct: 144 ERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDEST 203
Query: 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322
A+ L +L GV L EQPV R++ GL + R + ++ADES D ++
Sbjct: 204 AIRALPRLEAAGV--ELIEQPVPRENLDGLARL----RSRNRVPIMADESVSGPADAFEL 257
Query: 323 MQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381
+ A V ++K+AK G+ ++ +G+ L M+E+ + T + HL A L
Sbjct: 258 ARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASAHLFATLPS 317
Query: 382 IKY-VNLNTPFLLSEDP 397
+ + L P LL+ED
Sbjct: 318 LPFGCELFGPLLLAEDL 334
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. Length = 365 |
| >gnl|CDD|162905 TIGR02534, mucon_cyclo, muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 78/342 (22%), Positives = 143/342 (41%), Gaps = 22/342 (6%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTK 124
+Q E ++V P L +++ V +R+ +G +G+GE L G ++
Sbjct: 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGE-GTTIGGLWWGGESP 59
Query: 125 ALVKVREACQF---LRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
+K L T + + ++ +++ G+ FA +A V+ AL DA A + +
Sbjct: 60 ETIKANIDTYLAPVLVGRDATEIAAIMADLEKVVAGNRFA--KAAVDTALHDAQARRLGV 117
Query: 182 PLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL-GFSTLKLNVGRNITADFDVLQ 239
P+ L GG +S+ T+ + A + + + KL +G AD DV
Sbjct: 118 PVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIGARDPAD-DVAH 176
Query: 240 AI---HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296
+ A+ S +D N + A+ L +L D GV L EQP ++ L ++
Sbjct: 177 VVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARLT 234
Query: 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGL 355
+ + ++ADES D + + + A V +K K G+L + +I +G+
Sbjct: 235 ----RRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGI 290
Query: 356 HLMIDGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSED 396
L M+E + T + H A + + L P LL ++
Sbjct: 291 ALYGGTMLEGPIGTIASAHFFATFPALSFGTELFGPLLLKDE 332
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). Length = 368 |
| >gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 67/289 (23%), Positives = 124/289 (42%), Gaps = 24/289 (8%)
Query: 98 IRVELSNGCVGWGEVAVV--PLVTG-DQTKALVKVREACQFLRQSPPTTLN--FALDEIA 152
+ + G G+GEV P T A +++ L + + E
Sbjct: 29 VELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKD--YLLPLLLGREFSHPEEVSERL 86
Query: 153 RILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEAS-EL 211
+ G+ A +AG+EMA+ D A + L + GG +S+ ++I E +
Sbjct: 87 APIKGNNMA--KAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQ 144
Query: 212 ASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLN 271
+Y + G+ +KL + D + L+A+ P + DAN YT + +L +L+
Sbjct: 145 IERYLEEGYKRIKLKIKPGW--DVEPLKAVRERFPDIPLMADANSAYTLADI-PLLKRLD 201
Query: 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS--VVADESCRSLNDVQKVMQENLAS 329
+ G+ ++ EQP+ DD H A + + DES +S D +K ++
Sbjct: 202 EYGL--LMIEQPLAADDLID-H-----AELQKLLKTPICLDESIQSAEDARKAIELGACK 253
Query: 330 VVNIKLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
++NIK + G L L+I ++ G+ + GM+E+ + + LA+
Sbjct: 254 IINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALAS 302
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 354 |
| >gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 1e-22
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 40/219 (18%)
Query: 163 VRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222
V +G++MAL D A ++ +PL L GG S V PA S + +
Sbjct: 43 VISGIDMALWDLAAKALGVPLAELLGGGSR--------DRV-PAYGSI---ERVRA---- 86
Query: 223 LKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282
++ G + +DAN +T +EA+ ++ L G E+
Sbjct: 87 VREAFGPDA-----------------RLAVDANGAWTPKEAIRLIRALEKYG--LAWIEE 127
Query: 283 PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341
P DD G + R GI + ADES +++D + ++ ++ IK + G +
Sbjct: 128 PCAPDDLEGYAAL----RRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLT 183
Query: 342 GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380
+ + G+ +M+ G +E+ + T ALHLAA L
Sbjct: 184 ESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALP 222
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. Length = 229 |
| >gnl|CDD|239436 cd03320, OSBS, o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-22
Identities = 74/305 (24%), Positives = 112/305 (36%), Gaps = 64/305 (20%)
Query: 79 LSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQ 138
LS PL + + +R+E G VGWGE+A PL
Sbjct: 10 LSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIA--PL--------------------- 46
Query: 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI 198
+ G+E AL + A + R N +
Sbjct: 47 -----------------------PLAFGIESALANLEALLVGFTRPR------NRIPVNA 77
Query: 199 TIPAVSPAEASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIHAVHP-HCSFILDANE 256
+PA A E + Y G+ T+KL VG + D L+A+ P LDAN
Sbjct: 78 LLPAGDAAALGEAKAAY-GGGYRTVKLKVGATSFEEDLARLRALREALPADAKLRLDANG 136
Query: 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL 316
G++ EEA+ L L + EQP+ DD + L R G+ + DES R L
Sbjct: 137 GWSLEEALAFLEALAAGRI--EYIEQPLPPDDLAELR------RLAAGVPIALDESLRRL 188
Query: 317 NDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375
+D + + +K A G L++ + R G+ ++ +E+ + G HL
Sbjct: 189 DDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHL 248
Query: 376 AAGLG 380
AA L
Sbjct: 249 AAALP 253
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 263 |
| >gnl|CDD|239432 cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 6e-21
Identities = 67/327 (20%), Positives = 121/327 (37%), Gaps = 51/327 (15%)
Query: 79 LSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQ 138
L PL +V V +RV +G GWGE P A ++ A + +
Sbjct: 10 LRVPLPEPGGAVTWRNLVLVRVTTDDGITGWGEA--YPGGRPSAVAAAIEDLLAPLLIGR 67
Query: 139 SPPTTLNFALDEIARIL--------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA 190
P ++ + L G + + V++AL D + +P+++L GG
Sbjct: 68 DP-----LDIERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGK 122
Query: 191 SNSLSTAITIPA--------VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH 242
+ SP E +E A + GF+ +KL VG + D+ + +
Sbjct: 123 VRD-----RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLA 177
Query: 243 AVH-------PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
V P ++DAN + EA+ + L + + FE+PV DD GL +
Sbjct: 178 RVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLF--WFEEPVPPDDLEGLARL 235
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSG 354
R + + A E+ + + + +++ ++ + K G+ +I G
Sbjct: 236 ----RQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHG 291
Query: 355 L----HLMIDGMIETRLATGFALHLAA 377
+ H + +LHLAA
Sbjct: 292 VRVAPHGAGGP-----IGLAASLHLAA 313
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). Length = 357 |
| >gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 1e-17
Identities = 63/285 (22%), Positives = 113/285 (39%), Gaps = 18/285 (6%)
Query: 98 IRVELSNGCVGWGEVAV--VPLVTGDQTKALVKVRE--ACQFLRQSPPTTLNFALDEIAR 153
I + G G+GEV P T + + + E + + E+ R
Sbjct: 26 IELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINKEFEHP--SEALELVR 83
Query: 154 ILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELAS 213
L G+ A +AG+EMAL D L G + + + +
Sbjct: 84 SLKGTPMA--KAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIE 141
Query: 214 KYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDM 273
G+ +KL + I +++ P ++DANE Y ++ L +L+
Sbjct: 142 SLKATGYKRIKLKITPQI--MHQLVKLRRLRFPQIPLVIDANESYDLQD-FPRLKELDRY 198
Query: 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333
++ E+P DD S L +++ + DES SL+D + +++ V+NI
Sbjct: 199 QLL--YIEEPFKIDDISMLDELA----KGTITPICLDESITSLDDARNLIELGNVKVINI 252
Query: 334 KLAKFGVLG-TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
K + G L + I ++ G + I GM+ET ++ F + LA+
Sbjct: 253 KPGRLGGLTEVQKAIDTCKEHGAKVWIGGMLETGISRAFNVALAS 297
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 324 |
| >gnl|CDD|214914 smart00922, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 8e-16
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 205 PAEASELASKYCK-LGFSTLKLNVGRNITADFDVLQAIH-AVHPHCSFILDANEGYTSEE 262
P E +E A + GF +K+ VG D + A+ AV P ++DAN +T+EE
Sbjct: 1 PEELAEAARRAVAEAGFRAVKVKVGGGPLEDLARVAAVREAVGPDADLMVDANGAWTAEE 60
Query: 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296
A+ L L+++G E+PV DD GL ++
Sbjct: 61 AIRALEALDELG--LEWIEEPVPPDDLEGLAELR 92
|
Mandelate racemase (MR) and muconate lactonizing enzyme (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyze mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures.. This entry represents the C-terminal region of these proteins. Length = 97 |
| >gnl|CDD|233641 TIGR01927, menC_gamma/gm+, o-succinylbenzoate synthase | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-14
Identities = 70/289 (24%), Positives = 110/289 (38%), Gaps = 35/289 (12%)
Query: 97 AIRVEL-SNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
+ V L G GWGE+A +P G T+ L EA F R ++ I L
Sbjct: 23 GLIVRLTDEGRTGWGEIAPLP---GFGTETL---AEALDFCRALIEEITRGDIEAIDDQL 76
Query: 156 PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKY 215
P SV G E A L L G ++ + + + + L +
Sbjct: 77 P-----SVAFGFESA------------LIELESGDELPPASNYYVALLPAGDPALLLLRS 119
Query: 216 CKL-GFSTLKLNVGR-NITADFDVLQAIHAVHP-HCSFILDANEGYTSEEAVEVLGKLN- 271
K GF T K VG + + ++ + P LDAN G + +EA + L L+
Sbjct: 120 AKAEGFRTFKWKVGVGELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDP 179
Query: 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331
++ E+P+ D ++S F+ T G ++ DES L + +
Sbjct: 180 NLRGRIAFLEEPLPDAD-----EMSAFSEAT-GTAIALDESLWELPQLADEYGPGWRGAL 233
Query: 332 NIKLAKFGVLGTL-QIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379
IK A G L + + + GL + + E+ +A G LAA L
Sbjct: 234 VIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKL 282
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 307 |
| >gnl|CDD|215530 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 75/263 (28%), Positives = 117/263 (44%), Gaps = 39/263 (14%)
Query: 77 VALSAPLSLGLSSVENV--ENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
+ L AP + E + + L +G VG+GEVA + + D L+ V E +
Sbjct: 943 IQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEIHEED----LLDVEEQLR 998
Query: 135 FLRQS-PPTTLNFALDEIAR-----------ILPGSEFASVRAGVEMALIDAVANSIDIP 182
FL ++F L + I P S F SVR G+EMA+++A+A
Sbjct: 999 FLLHVIKGAKISFMLPLLKGSFSSWIWSELGIPPSSIFPSVRCGLEMAILNAIAVRHGSS 1058
Query: 183 LWRL---FGGASNSL--STAITIPAV-----SPAEASELASKYCKLGFSTLKLNVGRNIT 232
L + + N S ++ I A+ SP E + +A K + GFS +KL VGR ++
Sbjct: 1059 LLNILDPYQKDENGSEQSHSVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVS 1118
Query: 233 A--DFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289
D V+Q + AV DAN +T EEA+E + + + E+PV +D
Sbjct: 1119 PIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIEFGSLVKSCNLKYI--EEPVQDED- 1175
Query: 290 SGLHDVSNFARDTYGISVVADES 312
D+ F +T G+ V DE+
Sbjct: 1176 ----DLIKFCEET-GLPVALDET 1193
|
Length = 1655 |
| >gnl|CDD|185083 PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 32/256 (12%)
Query: 149 DEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG-GASNSLSTAITIPAVSPAE 207
+ + ++LP + R V+ AL D A L +L G +++TA T+ +P +
Sbjct: 76 EALQKLLPA---GAARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQ 132
Query: 208 ASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL 267
+ AS + G LK+ + ++ ++ + AI + P + I+DANE + +E
Sbjct: 133 MANSASALWQAGAKLLKVKLDNHLISE--RMVAIRSAVPDATLIVDANESWRAEGLAARC 190
Query: 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327
L D+GV + EQP+ D + L NF + + + ADESC + + +L
Sbjct: 191 QLLADLGV--AMLEQPLPAQDDAAL---ENF---IHPLPICADESCHT--------RSSL 234
Query: 328 ASV------VNIKLAKFGVL-GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380
++ VNIKL K G L L + R G LM+ M+ T A AL L
Sbjct: 235 KALKGRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPLVPQ-- 292
Query: 381 CIKYVNLNTPFLLSED 396
+++ +L+ P L+ D
Sbjct: 293 -VRFADLDGPTWLAVD 307
|
Length = 321 |
| >gnl|CDD|239437 cd03321, mandelate_racemase, Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 17/236 (7%)
Query: 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK 124
V + R +NV + P+ + +V V I + G G + K
Sbjct: 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFTYTPAALKSLK 60
Query: 125 ALVKVREACQFLRQSP--PTTLNFALDEIARILPGSEFASV-RAGVEMALIDAVANSIDI 181
L+ + L P P L AL + R+L + + AG++MA DA+A +
Sbjct: 61 QLL--DDMAALLVGEPLAPAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGL 118
Query: 182 PLWRLFGGASNSL----STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITA-DFD 236
PL +L GG + S + ++ A A + GF +K +G D
Sbjct: 119 PLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAA----EEGFHAVKTKIGYPTADEDLA 174
Query: 237 VLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
V+++I AV ++D N+ T EA+E L+ G+ + E+P + D+ G
Sbjct: 175 VVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWI--EEPTLQHDYEG 228
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 355 |
| >gnl|CDD|235061 PRK02714, PRK02714, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 73/295 (24%), Positives = 121/295 (41%), Gaps = 40/295 (13%)
Query: 94 ENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIAR 153
E + +R+ G +GWGE+A +P G +T + EA F +Q P ++I
Sbjct: 29 EGIILRLTDETGKIGWGEIAPLPWF-GSET-----LEEALAFCQQLPG---EITPEQIFS 79
Query: 154 I---LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASE 210
I LP +F G E AL + + ++ L N LS + +PA A +
Sbjct: 80 IPDALPACQF-----GFESALENESGSRSNVTL--------NPLSYSALLPAGEAAL--Q 124
Query: 211 LASKYCKLGFSTLKLNVGRNITAD-FDVLQAIHAVHP-HCSFILDANEGYTSEEA---VE 265
+ G+ T K +G + + + + P LDAN G + EEA ++
Sbjct: 125 QWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQ 184
Query: 266 VLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325
+ + G I EQP+ D + + +S Y + DES +L +Q+ Q+
Sbjct: 185 LCDRR-LSGKIE-FIEQPLPPDQFDEMLQLSQ----DYQTPIALDESVANLAQLQQCYQQ 238
Query: 326 NLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380
+ IK A G L+ + ++ L + + ET + AL LAA L
Sbjct: 239 GWRGIFVIKPAIAGSPSRLR--QFCQQHPLDAVFSSVFETAIGRKAALALAAELS 291
|
Length = 320 |
| >gnl|CDD|222086 pfam13378, MR_MLE_C, Enolase C-terminal domain-like | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-10
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 310 DESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLA 368
ES SL D +++++ ++ + + G+ L+I G+ + GM E +
Sbjct: 1 GESLYSLADFRRLLEAGAVDIIQPDVTRVGGITEALKIAALAEAFGVPVAPHGM-EGGIG 59
Query: 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEV 404
+LHLAA L + P+LL +D G V
Sbjct: 60 LAASLHLAAALPNFDILEYV-PYLLPDDLLTGPPPV 94
|
This domain appears at the C-terminus of many of the proteins that carry the MR_MLE, pfam01188 and MR_MLE_N pfam02746 domains. EC:4.2.1.40. Length = 111 |
| >gnl|CDD|201648 pfam01188, MR_MLE, Mandelate racemase / muconate lactonizing enzyme, C-terminal domain | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-09
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 237 VLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
+ A+ AV P +DAN +T EEA+ + L G+ + E+P+ DD GL ++
Sbjct: 1 RVAAVREAVGPDVDLRVDANGAWTPEEAIRLARALEPYGL--LWIEEPLPPDDLEGLAEL 58
Query: 296 S 296
Sbjct: 59 R 59
|
C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain. Length = 69 |
| >gnl|CDD|235084 PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 199 TIPAVSPAEASELASKY--CKLGFSTLKLNV---GRNITADFDVLQAIH-AVHPHCSFIL 252
T+PAV A+ E+ +++ C+ T K+ V G+ + D + A+ A+ P +
Sbjct: 84 TVPAVDAAQVPEVLARFPGCR----TAKVKVAEPGQTLADDVARVNAVRDALGPDGRVRV 139
Query: 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA--RDTYGISVVAD 310
DAN G++ +EAV L+ G + + EQP V A R G+ + AD
Sbjct: 140 DANGGWSVDEAVAAARALDADGPLEYV-EQPC--------ATVEELAELRRRVGVPIAAD 190
Query: 311 ESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATG 370
ES R D +V + A V +K+A G G + + GL +++ ++T +
Sbjct: 191 ESIRRAEDPLRVARAGAADVAVLKVAPLG--GVRAALDIAEQIGLPVVVSSALDTSVGIA 248
Query: 371 FALHLAAGLGCIKY-VNLNTPFLLSED 396
L LAA L + + L T L ED
Sbjct: 249 AGLALAAALPELDHACGLATGGLFEED 275
|
Length = 327 |
| >gnl|CDD|239444 cd03328, MR_like_3, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 28/257 (10%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVG----WGEVAVVPLVTGDQ 122
V+R E R V AP + G + + V + V + G G + + A LV G
Sbjct: 2 VERVEARAYTVPTDAPEADGTLAWDATTLVLVEVR-AGGRTGLGYTYADAAAAALVDG-L 59
Query: 123 TKALVKVREACQFLRQSPPT---TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSI 179
+V+ R+A PP + A+ R PG ++ A V++AL D A +
Sbjct: 60 LAPVVEGRDAL-----DPPAAWEAMQRAVRNAGR--PGVAAMAISA-VDIALWDLKARLL 111
Query: 180 DIPLWRLFGGASNSL----STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADF 235
+PL RL G A +S+ S T + E S + G +K+ +GR+ D
Sbjct: 112 GLPLARLLGRAHDSVPVYGSGGFT--SYDDDRLREQLSGWVAQGIPRVKMKIGRDPRRDP 169
Query: 236 DVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHD 294
D + A A+ P +DAN Y+ ++A+ + D GV FE+PV DD +GL
Sbjct: 170 DRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRL 227
Query: 295 VSNFARDTYGISVVADE 311
V R G+ + A E
Sbjct: 228 VR--ERGPAGMDIAAGE 242
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. Length = 352 |
| >gnl|CDD|239441 cd03325, D-galactonate_dehydratase, D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 71/353 (20%), Positives = 133/353 (37%), Gaps = 58/353 (16%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
+ +++E G VGWGE P V G V+E +L P ++ +++
Sbjct: 15 LFVKIETDEGVVGWGE----PTVEGKARTVEAAVQELEDYLIGKDPM----NIEHHWQVM 66
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NSLSTAITIPAVSPAE 207
G S +G++ AL D + +P+ +L GG + + I P++
Sbjct: 67 YRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSD 126
Query: 208 ASELASKYCKLGFSTLKLN---------VGRNITADFDVLQAI-HAVHPHCSFILDANEG 257
+E A + GF+ +K+N + + A + + A+ AV P +D + G
Sbjct: 127 VAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFH-G 185
Query: 258 YTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL 316
S+ + L K L + E+PV ++ L +++ I + E S
Sbjct: 186 RVSKPMAKDLAKELEPYR--LLFIEEPVLPENVEALAEIAARTT----IPIATGERLFSR 239
Query: 317 NDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIET---RLATGFAL 373
D ++++++ ++ ++ G G I +K I M E LA L
Sbjct: 240 WDFKELLEDGAVDIIQPDISHAG--G----ITELKK------IAAMAEAYDVALAPHCPL 287
Query: 374 HLAAGLGCIKYVNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425
A + +V+ +TP FL+ E + G YN +
Sbjct: 288 GPIALAASL-HVDASTPNFLIQE-------QSLGIHYNEGDDLLDYLVDPEVF 332
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 352 |
| >gnl|CDD|217212 pfam02746, MR_MLE_N, Mandelate racemase / muconate lactonizing enzyme, N-terminal domain | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-06
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 80 SAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREA-CQFLRQ 138
P+ + +V+ V +R+E S G VG GE G + + L
Sbjct: 13 LRPIQMAFGTVQQQSLVIVRIETSEGVVGIGEAT---SYGGRAETIKAILDDHLAPLLIG 69
Query: 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188
++ + R G+ A +A ++MAL D A +++PL L G
Sbjct: 70 RDAANISDLWQLMYRAALGNMSA--KAAIDMALWDLKAKVLNLPLADLLG 117
|
SCOP reports fold similarity with enolase N-terminal domain. Length = 117 |
| >gnl|CDD|239440 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 210 ELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLG 268
L + GF+ KL VG ++ D + V P ++DAN+ + EA+E +
Sbjct: 202 RLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAIEWVK 261
Query: 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328
+L + P E+P DD G + A I V E C++ ++++Q
Sbjct: 262 QLAEFK--PWWIEEPTSPDDILGHAAIRK-ALAPLPIGVATGEHCQNRVVFKQLLQAGAI 318
Query: 329 SVVNIKLAKFG 339
VV I + G
Sbjct: 319 DVVQIDSCRLG 329
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Length = 415 |
| >gnl|CDD|235345 PRK05105, PRK05105, O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 237 VLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-EQPVHRDDWSGLHDV 295
+L+AI P LDAN G+T E+A + + + F E+P D D
Sbjct: 151 LLEAI----PDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRIAFLEEPCKTPD-----DS 201
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQ-IIKATRKSG 354
FAR T GI++ DES R D Q + + ++V IK G L Q +I+ G
Sbjct: 202 RAFARAT-GIAIAWDESLRE-PDFQFEAEPGVRAIV-IKPTLTGSLEKCQELIEQAHALG 258
Query: 355 LHLMIDGMIETRLA-TGFALHLAAGL 379
L +I IE+ L T A LAA L
Sbjct: 259 LRAVISSSIESSLGLTQLA-RLAAWL 283
|
Length = 322 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 438 | |||
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 100.0 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 100.0 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 100.0 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 100.0 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 100.0 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 100.0 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 100.0 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 100.0 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 100.0 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 100.0 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 100.0 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 100.0 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 100.0 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 100.0 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 100.0 | |
| PRK15129 | 321 | L-Ala-D/L-Glu epimerase; Provisional | 100.0 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 100.0 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 100.0 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 100.0 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 100.0 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 100.0 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 100.0 | |
| cd03314 | 369 | MAL Methylaspartate ammonia lyase (3-methylasparta | 100.0 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 100.0 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 100.0 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 100.0 | |
| PRK00077 | 425 | eno enolase; Provisional | 100.0 | |
| cd03313 | 408 | enolase Enolase: Enolases are homodimeric enzymes | 100.0 | |
| TIGR01060 | 425 | eno phosphopyruvate hydratase. Alternate name: eno | 100.0 | |
| PLN00191 | 457 | enolase | 100.0 | |
| PTZ00081 | 439 | enolase; Provisional | 99.97 | |
| COG1441 | 321 | MenC O-succinylbenzoate synthase [Coenzyme metabol | 99.96 | |
| PF02746 | 117 | MR_MLE_N: Mandelate racemase / muconate lactonizin | 99.87 | |
| PF13378 | 111 | MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FC | 99.84 | |
| COG0148 | 423 | Eno Enolase [Carbohydrate transport and metabolism | 99.79 | |
| PRK08350 | 341 | hypothetical protein; Provisional | 99.78 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 99.65 | |
| PTZ00378 | 518 | hypothetical protein; Provisional | 99.65 | |
| KOG2670 | 433 | consensus Enolase [Carbohydrate transport and meta | 99.55 | |
| COG3799 | 410 | Mal Methylaspartate ammonia-lyase [Amino acid tran | 99.39 | |
| PF07476 | 248 | MAAL_C: Methylaspartate ammonia-lyase C-terminus; | 99.35 | |
| PF00113 | 295 | Enolase_C: Enolase, C-terminal TIM barrel domain; | 99.17 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.03 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.98 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.65 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.55 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.48 | |
| PF03952 | 132 | Enolase_N: Enolase, N-terminal domain; InterPro: I | 98.13 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 97.43 | |
| PF05034 | 159 | MAAL_N: Methylaspartate ammonia-lyase N-terminus; | 97.23 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 97.12 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 96.89 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 96.82 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.79 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 96.71 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 96.59 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 96.55 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 96.55 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 96.43 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.26 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.19 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 96.1 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 96.02 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.95 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 95.86 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 95.76 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 95.66 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 95.58 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 95.55 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 95.32 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.31 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.08 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 95.05 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 94.33 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 94.13 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 93.7 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 93.06 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 92.84 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 92.46 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 92.37 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 92.23 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 92.13 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 91.97 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.7 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 91.58 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 91.55 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 91.18 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.17 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 91.03 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 90.92 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 90.86 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 90.48 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 90.46 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 90.25 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 90.22 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 90.22 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.11 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 90.07 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 90.0 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 89.95 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 89.89 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 89.62 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 89.59 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 89.03 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 88.82 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 88.67 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 88.16 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 88.07 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 87.99 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 87.92 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.75 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 87.61 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 87.35 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 87.11 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 86.97 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 86.92 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 86.81 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 86.11 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 85.9 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 85.89 | |
| cd06660 | 285 | Aldo_ket_red Aldo-keto reductases (AKRs) are a sup | 85.87 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 85.83 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 85.74 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 85.63 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 85.5 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 85.29 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 85.09 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 84.59 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 84.19 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 84.1 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 83.85 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 83.8 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 83.72 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 83.72 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 83.55 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 83.07 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 82.88 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 82.84 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 82.47 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 82.28 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 81.99 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 81.94 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 81.86 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 81.77 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 81.69 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 81.61 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 81.6 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 81.41 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 81.31 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 81.26 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 80.63 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 80.47 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 80.46 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 80.41 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 80.34 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 80.17 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 80.16 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 80.05 |
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=543.12 Aligned_cols=357 Identities=21% Similarity=0.329 Sum_probs=320.2
Q ss_pred EEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHHH-HHHHH-HHhhHhcCCCCC
Q 013681 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVR-EACQFLRQSPPT 142 (438)
Q Consensus 67 I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~-~i~~~l~g~~~~ 142 (438)
|++|+++.+++|++.||.++.++.+.++.++|||+|++|++||||+.+. |.++++..+. ...++ .++|.|.|+++.
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 80 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVGRDAT 80 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCChh
Confidence 7899999999999999999999999999999999999999999999875 4454433232 23344 489999999999
Q ss_pred CHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHh-hcCC
Q 013681 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYC-KLGF 220 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~-~~Gf 220 (438)
+++.+|+.|.+.+.+. +.+++|||+||||+.||..|+|||+||||. ++++|+|++++..+++++.++++++. ++||
T Consensus 81 ~~~~~~~~~~~~~~~~--~~a~said~AlwDl~gK~~g~Pv~~LLGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf 158 (368)
T TIGR02534 81 EIAAIMADLEKVVAGN--RFAKAAVDTALHDAQARRLGVPVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRH 158 (368)
T ss_pred hHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 9999999887754433 458999999999999999999999999997 78999999988877776666666655 5899
Q ss_pred cEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHh
Q 013681 221 STLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 221 ~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
++||+|+|. ++++|+++|+++|+ .++++.|++|||++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 159 ~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~- 235 (368)
T TIGR02534 159 RSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARLTR- 235 (368)
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh--hheECCCCcccHHHHHHHHH-
Confidence 999999986 78999999999999 57999999999999999999999999999987 59999999999999999986
Q ss_pred hccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 299 ~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+.||+|+++|++|+++
T Consensus 236 ---~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i~~aa~~h~~a 312 (368)
T TIGR02534 236 ---RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPIGTIASAHFFA 312 (368)
T ss_pred ---hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 378 GLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 378 al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
++++..+ .|+++++++.++++.+++.++||++.+|++||||+++|++++++|+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~~~~~~~ 367 (368)
T TIGR02534 313 TFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVEVDEDKVNFYRR 367 (368)
T ss_pred hCCCCccccccccHHHhhhccccCCceeeCCEEecCCCCcCCcccCHHHHHHhhc
Confidence 9998776 47777777667788788899999999999999999999999999986
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-68 Score=538.32 Aligned_cols=355 Identities=24% Similarity=0.351 Sum_probs=320.3
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC--CCCchHHH-HHHHHH-HHhhHhcCCCC
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTK-ALVKVR-EACQFLRQSPP 141 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~s~~~~~-~~~~~~-~i~~~l~g~~~ 141 (438)
+|++++++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.+ .++++... ....++ .+.|.+.|+++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~~~ 80 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLIGRDA 80 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCCh
Confidence 689999999999999999999999999999999999999999999998764 34443322 233344 47899999999
Q ss_pred CCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcC-
Q 013681 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG- 219 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G- 219 (438)
.+++.+|+.|++.+.++ +++++||||||||++||..|+|+|+||||. ++++|+|++++..+++++.+++++++++|
T Consensus 81 ~~~~~~~~~l~~~~~~~--~~a~said~AlwDl~gK~~g~Pl~~LLGg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 158 (365)
T cd03318 81 TNIGAAMALLDRAVAGN--LFAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDTERDIAEAEEMLEAGR 158 (365)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHhHcCCCHHHHcCCCcCCceEEEEEEeCCCHHHHHHHHHHHHhCCC
Confidence 99999999998755443 458999999999999999999999999997 78999999988888888888888889999
Q ss_pred CcEEEEecCC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHH
Q 013681 220 FSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 220 f~~iKlKvG~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
|++||+|+|. ++++|+++|+++|+. ++++.|++|||++|++++|++++++|+++++. |||||++++|++++++|++
T Consensus 159 f~~~KiKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~--~iEeP~~~~~~~~~~~l~~ 236 (365)
T cd03318 159 HRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVE--LIEQPVPRENLDGLARLRS 236 (365)
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcc--eeeCCCCcccHHHHHHHHh
Confidence 9999999996 789999999999995 67999999999999999999999999999974 9999999999999999986
Q ss_pred hhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHH
Q 013681 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (438)
Q Consensus 298 ~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (438)
++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+|+++|++|++
T Consensus 237 ----~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i~~aa~~hla 312 (365)
T cd03318 237 ----RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASAHLF 312 (365)
T ss_pred ----hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhh
Q 013681 377 AGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSC 428 (438)
Q Consensus 377 ~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~ 428 (438)
+++++..+ .|++++..+.++++..++.++||++.+|++||||+++|++.+++
T Consensus 313 aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~~ 365 (365)
T cd03318 313 ATLPSLPFGCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGVRLDEDKVRR 365 (365)
T ss_pred HhCCCCcccccccchHhhhcccccCCceeECCEEeCCCCCcCCcccCHHHhcC
Confidence 99998666 57777766667777778889999999999999999999999875
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=512.34 Aligned_cols=346 Identities=21% Similarity=0.361 Sum_probs=305.6
Q ss_pred EEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHH-HHHHHH-HHhhHhcCCCCCCHH
Q 013681 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVR-EACQFLRQSPPTTLN 145 (438)
Q Consensus 70 i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~-~i~~~l~g~~~~~~~ 145 (438)
++++.+++|+++|+.++.++.+.++.++|||+|++|++||||+.+. |+++++... ....++ .+.|.|.|+++.+.+
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~ 80 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREFSHPE 80 (354)
T ss_pred CEEEEEEecccCceEccceEEEeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 4678999999999999999999999999999999999999999965 556554333 233344 378999999999999
Q ss_pred HHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCH-HHHHHHHHHHhhcCCcEEE
Q 013681 146 FALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSP-AEASELASKYCKLGFSTLK 224 (438)
Q Consensus 146 ~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~-~~~~~~~~~~~~~Gf~~iK 224 (438)
++|+.|.+ +.+. +++++||||||||++||..|+|+|+||||.++++|+|.+++..++ +++.+++++++++||++||
T Consensus 81 ~~~~~~~~-~~~~--~~a~aaid~AlwDl~gk~~g~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~K 157 (354)
T cd03317 81 EVSERLAP-IKGN--NMAKAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIK 157 (354)
T ss_pred HHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 99999876 4443 568999999999999999999999999998899999999877665 8899999999999999999
Q ss_pred EecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC
Q 013681 225 LNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (438)
Q Consensus 225 lKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~ 304 (438)
+|++. +.|+++|++||+..+++.|++|||++|++++|. ++++|+++++ .|||||++++|++++++|++ +++
T Consensus 158 iKv~~--~~d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a~-~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 228 (354)
T cd03317 158 LKIKP--GWDVEPLKAVRERFPDIPLMADANSAYTLADIP-LLKRLDEYGL--LMIEQPLAADDLIDHAELQK----LLK 228 (354)
T ss_pred EecCh--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHH-HHHHhhcCCc--cEEECCCChhHHHHHHHHHh----hcC
Confidence 99974 689999999999756999999999999999985 8999999987 59999999999999999986 689
Q ss_pred CeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcc
Q 013681 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIK 383 (438)
Q Consensus 305 iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~ 383 (438)
+||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+++.+|++|++ ++++..
T Consensus 229 ~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~l~~~a~~hla-~~~~~~ 307 (354)
T cd03317 229 TPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALA-SLPNFT 307 (354)
T ss_pred CCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccchHHHHHHHHHH-hCCCCC
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999996 566654
Q ss_pred ee-ecCCCc-ccccCCCCCceeeeCcEEecCCCCCccceeChhhhhh
Q 013681 384 YV-NLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSC 428 (438)
Q Consensus 384 ~~-e~~~pl-~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~ 428 (438)
+. +++... .+.++++.+++.++||++.+|++||||+++|++.+++
T Consensus 308 ~~~~~~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d~~~l~~ 354 (354)
T cd03317 308 YPGDISASSRYFEEDIITPPFELENGIISVPTGPGIGVTVDREALKK 354 (354)
T ss_pred CccccCcchhhhhhccccCCeEeeCCEEECCCCCcCceecCHHHhcC
Confidence 43 444332 4556777778889999999999999999999999874
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-65 Score=518.85 Aligned_cols=350 Identities=16% Similarity=0.206 Sum_probs=303.7
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCC-CCH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP-TTL 144 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~-~~~ 144 (438)
||++++++++.+|++.||+++.++...++.++|||+||+|++||||+... .+. ...+.++++.+.|.++ .+.
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~----~~~---~~~~~~~~~~llg~~~~~~~ 73 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG----AEA---LEALLEAARSLVGGDVFGAY 73 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC----HHH---HHHHHHHhHHHhCCCcchhh
Confidence 69999999999999999999888777889999999999999999997531 112 2234567888888877 577
Q ss_pred HHHHHHHHHHCC--C-----------ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeC---------
Q 013681 145 NFALDEIARILP--G-----------SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--------- 201 (438)
Q Consensus 145 ~~~~~~l~~~~~--g-----------~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--------- 201 (438)
+.+|+.|++... + ...+++++||||||||++||..|+|||+||||. ++++|+|.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~ya~~~~~~~~~~~~ 153 (395)
T cd03323 74 LAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKTD 153 (395)
T ss_pred HHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCccCeEEEEEEeeecccccccc
Confidence 889999986531 1 134678999999999999999999999999996 88999998642
Q ss_pred ------------CCCHHHHHHHHHHHhh-cCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHH
Q 013681 202 ------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL 267 (438)
Q Consensus 202 ------------~~~~~~~~~~~~~~~~-~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l 267 (438)
..+++++.++++++++ +||++||+|+|. ++++|+++|+++|+..+++.|+||||++|++++|++++
T Consensus 154 ~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~~ 233 (395)
T cd03323 154 LPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRLA 233 (395)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHHH
Confidence 3478889889988875 699999999996 68899999999999778999999999999999999999
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHH
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~ 346 (438)
++|++ ++ .|||||++ |+++|++|++ ++++||++||++.+..+++++++.+++|++|+|++++| +++++++
T Consensus 234 ~~l~~-~l--~~iEeP~~--d~~~~~~L~~----~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~ki 304 (395)
T cd03323 234 KELEG-VL--AYLEDPCG--GREGMAEFRR----ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRV 304 (395)
T ss_pred HhcCc-CC--CEEECCCC--CHHHHHHHHH----hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHH
Confidence 99999 87 49999998 8999999986 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhh
Q 013681 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (438)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~ 425 (438)
+++|+++|+++++|++.||+|+++|++|++++++|..+ .|...++...++++.+++.++||++.+|++||||+++|+++
T Consensus 305 a~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~~~d~~~~~~~~~~~~~~~~~~~~G~~~vp~~PGLGv~~d~~~ 384 (395)
T cd03323 305 AQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLITACDTHWIWQDGQVITGEPLRIKDGKVAVPDKPGLGVELDRDK 384 (395)
T ss_pred HHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCcccccccchhhhccccccCCCceeeCCEEECCCCCcCCccCCHHH
Confidence 99999999999999999999999999999999998764 23222322223344567888999999999999999999999
Q ss_pred hhhccc
Q 013681 426 VSCTQV 431 (438)
Q Consensus 426 l~~~~~ 431 (438)
+++|++
T Consensus 385 l~~~~~ 390 (395)
T cd03323 385 LAKAHE 390 (395)
T ss_pred HHHHHH
Confidence 999975
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=509.25 Aligned_cols=346 Identities=20% Similarity=0.249 Sum_probs=301.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHHHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~i~~~l~g~~~~~ 143 (438)
|+|++++++.+++|+++||.++.++.+..+.++|+|+|++|++||||+.. ++++..+ ....++.+.|.|+|++. +
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~---~~~~~~~~~~~~~~~l~p~LiG~~~-~ 76 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT---YTPAALKSLKQLLDDMAALLVGEPL-A 76 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec---CCCCcHHHHHHHHHHHHHHhCCCCC-C
Confidence 68999999999999999999999999999999999999999999999653 2332222 22234568999999975 5
Q ss_pred HHHHHHHHHHHC--CC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 144 LNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 144 ~~~~~~~l~~~~--~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
.+.+|+.+.+.. .+ ....++++||||||||++||..|+|||+||||.++++|+|.+++..+++++.+++++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~~~G 156 (355)
T cd03321 77 PAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEG 156 (355)
T ss_pred hHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHHHhh
Confidence 666776665532 12 22357899999999999999999999999999988999999988888999999999999999
Q ss_pred CcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHH
Q 013681 220 FSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 220 f~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
|++||+|+|. ++++|++++++||+ .+|++.|++|||++|++++|++++++|+++++ .|||||++++|+++|++|++
T Consensus 157 f~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 157 FHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred hHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHHH
Confidence 9999999986 78999999999999 57999999999999999999999999999987 59999999999999999986
Q ss_pred hhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHH
Q 013681 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (438)
Q Consensus 298 ~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (438)
++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ ++ +++|++
T Consensus 235 ----~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~--~~----~~~h~~ 304 (355)
T cd03321 235 ----ALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLF--QE----ISAHLL 304 (355)
T ss_pred ----hcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccch--HH----HHHHHH
Confidence 68999999999999999999999999999999999997 99999999999999999999884 22 467999
Q ss_pred hhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhc
Q 013681 377 AGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCT 429 (438)
Q Consensus 377 ~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~ 429 (438)
+++++..++|+.. +..+++..++.++||++.+|++||||+++|++++++|
T Consensus 305 aa~~~~~~~e~~~---~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~ 354 (355)
T cd03321 305 AVTPTAHWLEYVD---WAGAILEPPLKFEDGNAVIPDEPGNGIIWREKAVRKY 354 (355)
T ss_pred HhCCCcceeeccc---hHHHHhcCCcEEECCEEECCCCCcCCcccCHHHHHhh
Confidence 9999887766421 1223445668899999999999999999999999987
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-64 Score=504.82 Aligned_cols=340 Identities=23% Similarity=0.294 Sum_probs=294.6
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLN 145 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~ 145 (438)
||++++++.+++|++.|+..+..+...+..++|+|+| +|++||||+. +.+..... ..+.+.|.|+|+++.+++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~-----~~~~~~~~-i~~~~~p~liG~d~~~~~ 73 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTY-----ADAAAAAL-VDGLLAPVVEGRDALDPP 73 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCC-----ChHHHHHH-HHHHHHHHhcCCCcccHH
Confidence 6899999999999999997766666788899999998 7999999863 22211111 123578999999999999
Q ss_pred HHHHHHHHHC---C-CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC--CCHHHHHHHHHHHhhcC
Q 013681 146 FALDEIARIL---P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--VSPAEASELASKYCKLG 219 (438)
Q Consensus 146 ~~~~~l~~~~---~-g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~~~~~~~~~~~~~~~~G 219 (438)
.+|+.|++.. . +....++++||||||||++||..|+|||+||||.++++|+|.+++. .+++++.+++++++++|
T Consensus 74 ~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~G 153 (352)
T cd03328 74 AAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQG 153 (352)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHCC
Confidence 9999997742 1 1223468999999999999999999999999998899999988653 36888999999999999
Q ss_pred CcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHh
Q 013681 220 FSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 220 f~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
|+++|+|+|.+.++|+++++++|+ .++++.|+||||++|++++|++++++|+++++ .|+|||++++|+++|++|++
T Consensus 154 f~~~Kikvg~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~~EeP~~~~d~~~~~~l~~- 230 (352)
T cd03328 154 IPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRLVRE- 230 (352)
T ss_pred CCEEEeecCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCc--chhhCCCChhhHHHHHHHHh-
Confidence 999999999888999999999999 57899999999999999999999999999997 49999999999999999986
Q ss_pred hccc--cCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHH
Q 013681 299 ARDT--YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (438)
Q Consensus 299 ~r~~--~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (438)
+ +++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ .++++|+
T Consensus 231 ---~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~~------~~a~~hl 301 (352)
T cd03328 231 ---RGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHCA------PALHAHV 301 (352)
T ss_pred ---hCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCch------HHHHHHH
Confidence 6 7799999999999999999999999999999999997 99999999999999999999974 3578999
Q ss_pred HhhcCCcceeecCCC-cccccCCCCCceeeeCcEEecCC-CCCccceeChh
Q 013681 376 AAGLGCIKYVNLNTP-FLLSEDPFVGGCEVSGAIYNFTN-ARGQGGFLKWT 424 (438)
Q Consensus 376 a~al~~~~~~e~~~p-l~~~~~~~~~~~~~~~G~~~~p~-~pGlGv~ld~~ 424 (438)
+++++|..+.|+..+ ..+..+++.+++.++||++.+|+ +||||+++|+.
T Consensus 302 ~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv~~d~~ 352 (352)
T cd03328 302 ACAVPRLRHLEWFHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGLELRAR 352 (352)
T ss_pred HHhCCCCccceecccchhhhHHhccCCCcccCCEEeCCCCCCccceecCCC
Confidence 999999877775432 23334556677788999999988 79999999973
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-63 Score=507.56 Aligned_cols=344 Identities=15% Similarity=0.181 Sum_probs=294.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH-HHHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~i~~~l~g~~~~~ 143 (438)
|||++++++.+ . ..++.++|||+|++|++||||+.+. ++.......+ +.++|.|.|+++.+
T Consensus 1 mkI~~v~~~~~-~-------------~~~~~vlVri~td~G~~G~GE~~~~----~~~~~~~~~~~~~l~p~l~G~d~~~ 62 (404)
T PRK15072 1 MKIVDAEVIVT-C-------------PGRNFVTLKITTDDGVTGLGDATLN----GRELAVASYLQDHVCPLLIGRDAHR 62 (404)
T ss_pred CeeEEEEEEEE-C-------------CCCcEEEEEEEeCCCCeEEEecccC----CchHHHHHHHHHHHHHHcCCCChhH
Confidence 79999999643 1 1134689999999999999998632 1111222223 45899999999999
Q ss_pred HHHHHHHHHHHC---CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 144 LNFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 144 ~~~~~~~l~~~~---~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
++.+|+.|.+.. .+....++++||||||||++||..|+|||+||||. ++++|+|.+....+++++.+.+++++++|
T Consensus 63 ~e~~~~~l~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~~G 142 (404)
T PRK15072 63 IEDIWQYLYRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYGHANGRDIDELLDDVARHLELG 142 (404)
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 999999997632 22234568999999999999999999999999996 78999997655567888888899999999
Q ss_pred CcEEEEecCCC-----------------------------------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHH
Q 013681 220 FSTLKLNVGRN-----------------------------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (438)
Q Consensus 220 f~~iKlKvG~d-----------------------------------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A 263 (438)
|++||+|+|.+ ++.|+++|++||+ .++++.|++|||++|++++|
T Consensus 143 f~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN~~w~~~~A 222 (404)
T PRK15072 143 YKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVHHRLTPIEA 222 (404)
T ss_pred CCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECCCCCCHHHH
Confidence 99999999731 1345789999999 57999999999999999999
Q ss_pred HHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHH
Q 013681 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~ 342 (438)
++++++|+++++ .|||||++++|+++|++|++ ++++||++||++.+..+++++++.+++|++|+|++++| +++
T Consensus 223 ~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~ 296 (404)
T PRK15072 223 ARLGKSLEPYRL--FWLEDPTPAENQEAFRLIRQ----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITH 296 (404)
T ss_pred HHHHHhccccCC--cEEECCCCccCHHHHHHHHh----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHH
Confidence 999999999987 49999999999999999986 68999999999999999999999999999999999997 999
Q ss_pred HHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCcccee
Q 013681 343 TLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFL 421 (438)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~l 421 (438)
+++++++|+++|+++++|++. +|+++.+|++|+++++++..+.|++.+.....+++..++.++||++.+|++||||+++
T Consensus 297 ~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~vpd~PGLGi~~ 376 (404)
T PRK15072 297 LRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGIQEYMGHSEETLEVFPHSYTFEDGYLHPGDAPGLGVDF 376 (404)
T ss_pred HHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccceeeecccchhhHhhcCCCCeEECCEEECCCCCCCCeeE
Confidence 999999999999999999765 7999999999999999998777776543334556667788999999999999999999
Q ss_pred Chhhhhhcccc
Q 013681 422 KWTIVSCTQVD 432 (438)
Q Consensus 422 d~~~l~~~~~~ 432 (438)
|++++++|.+.
T Consensus 377 d~~~l~~~~~~ 387 (404)
T PRK15072 377 DEKLAAKYPYE 387 (404)
T ss_pred CHHHHhhCCCc
Confidence 99999999653
|
|
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-63 Score=500.92 Aligned_cols=345 Identities=16% Similarity=0.223 Sum_probs=298.0
Q ss_pred eEEEEEEEEEEeeccCCccc----CCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCC
Q 013681 66 DVQRAEGRELNVALSAPLSL----GLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP 141 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~----s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~ 141 (438)
+|++++++.+++|+++|+.+ +.++...++.++|||+|++|++||||+.+. . .. .....+.+.|.|+|+++
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~--~--~~--~~~~~~~l~p~liG~d~ 74 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP--V--TD--PALVDRFLKKVLIGQDP 74 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc--h--hH--HHHHHHHHHHhcCCCCh
Confidence 58999999999999998766 577888899999999999999999996431 1 11 11123457899999999
Q ss_pred CCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC-------CCHHHHHHHHHH
Q 013681 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-------VSPAEASELASK 214 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~-------~~~~~~~~~~~~ 214 (438)
.+++++|+.|++.+.+. ..++++||||||||++||..|+|||+||||.++++|+|.+++. .+++++.+.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~-~~~A~said~AlwDl~gk~~g~Pl~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~a~~ 153 (368)
T cd03329 75 LDRERLWQDLWRLQRGL-TDRGLGLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAEE 153 (368)
T ss_pred hHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHhhhhcCCcHHHHhhccccceeEEEecCCCcccccCCCHHHHHHHHHH
Confidence 99999999998865553 2358999999999999999999999999998899999987632 388999999999
Q ss_pred HhhcCCcEEEEecCCC--chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhh
Q 013681 215 YCKLGFSTLKLNVGRN--ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 215 ~~~~Gf~~iKlKvG~d--~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~ 291 (438)
++++||+.||+|+|.+ +++|++++++||+ .|+++.|+||||++|++++|++++++|+++++ .|+|||++++|+++
T Consensus 154 ~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~ 231 (368)
T cd03329 154 CKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGF--FWYEDPLREASISS 231 (368)
T ss_pred HHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCC--CeEeCCCCchhHHH
Confidence 9999999999999753 6899999999999 57999999999999999999999999999987 49999999999999
Q ss_pred HHHHHHhhccccCCeEEEcCCCCC-HHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHH
Q 013681 292 LHDVSNFARDTYGISVVADESCRS-LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (438)
Q Consensus 292 ~a~L~~~~r~~~~iPIa~dEsl~~-~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (438)
+++|++ ++++||++||++.+ +.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ .
T Consensus 232 ~~~l~~----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~~------~ 301 (368)
T cd03329 232 YRWLAE----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHGN------G 301 (368)
T ss_pred HHHHHh----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEECh------H
Confidence 999986 68999999999999 999999999999999999999997 99999999999999999999984 4
Q ss_pred HHHHHHHhhcCCcceeec--CCCcccccCC-----CCCceeeeCcEEecCCCCCccceeChhhhhhc
Q 013681 370 GFALHLAAGLGCIKYVNL--NTPFLLSEDP-----FVGGCEVSGAIYNFTNARGQGGFLKWTIVSCT 429 (438)
Q Consensus 370 ~a~~hla~al~~~~~~e~--~~pl~~~~~~-----~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~ 429 (438)
+|++|+++++++..++|. +.|.....++ ..+++..+||++.+|++||||+++|+++++++
T Consensus 302 ~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~ 368 (368)
T cd03329 302 AANLHVIAAIRNTRYYERGLLHPSQKYDVYAGYLSVLDDPVDSDGFVHVPKGPGLGVEIDFDYIERN 368 (368)
T ss_pred HHHHHHHhcCCCceeEEEecccccccccccccchhccCCCcCCCCeEECCCCCcCCccCCHHHHhhC
Confidence 688999999999888763 3443321111 11234568999999999999999999999875
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=502.07 Aligned_cols=341 Identities=18% Similarity=0.236 Sum_probs=289.8
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++++.+.+. + ..++|+|+|++|++||||+.... +.. .....++.+.|.|.|+++.++
T Consensus 1 mkI~~i~~~~~~-----~-----------~~vlV~v~t~dG~~G~GE~~~~~--~~~--~~~~~~~~~~p~l~G~d~~~~ 60 (382)
T PRK14017 1 MKITKLETFRVP-----P-----------RWLFLKIETDEGIVGWGEPVVEG--RAR--TVEAAVHELADYLIGKDPRRI 60 (382)
T ss_pred CeEEEEEEEEEC-----C-----------CEEEEEEEECCCCeEEeccccCC--chH--HHHHHHHHHHHHhCCCCHHHH
Confidence 789999997651 1 13899999999999999986421 111 222234568999999999999
Q ss_pred HHHHHHHHHH--CCC-ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCC
Q 013681 145 NFALDEIARI--LPG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (438)
Q Consensus 145 ~~~~~~l~~~--~~g-~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (438)
+.+|+.|+.. ..+ ...+++++|||||||||+||..|+|||+||||. ++++|+|.+++..+++++.+++++++++||
T Consensus 61 ~~~~~~l~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~r~~i~~~~~~~~~~~~~~~~~a~~~~~~Gf 140 (382)
T PRK14017 61 EDHWQVMYRGGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGGDRPADVAEAARARVERGF 140 (382)
T ss_pred HHHHHHHHHhcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeeEeEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999663 222 123568999999999999999999999999996 789999988777899999999999999999
Q ss_pred cEEEEecCC---------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChh
Q 013681 221 STLKLNVGR---------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290 (438)
Q Consensus 221 ~~iKlKvG~---------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~ 290 (438)
+.||+|+|. ++++|+++|+++|+ .+|+++|+||||++|+.++|++++++|+++++ .|||||++++|++
T Consensus 141 ~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~ 218 (382)
T PRK14017 141 TAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRP--MFIEEPVLPENAE 218 (382)
T ss_pred CEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCC--CeEECCCCcCCHH
Confidence 999999963 35889999999999 57899999999999999999999999999997 4999999999999
Q ss_pred hHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHH
Q 013681 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (438)
Q Consensus 291 ~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (438)
+|++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +|++
T Consensus 219 ~~~~L~~----~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~-~i~~ 293 (382)
T PRK14017 219 ALPEIAA----QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLG-PIAL 293 (382)
T ss_pred HHHHHHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCCC-HHHH
Confidence 9999986 68999999999999999999999999999999999998 9999999999999999999999865 8999
Q ss_pred HHHHHHHhhcCCcceeecC--CCcccccC---CCC--CceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 370 GFALHLAAGLGCIKYVNLN--TPFLLSED---PFV--GGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 370 ~a~~hla~al~~~~~~e~~--~pl~~~~~---~~~--~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
+|++|+++++++..+.+.. ..+....+ .+. .++.++||++.+|++||||+++|+++|++|+..
T Consensus 294 aa~~hl~aa~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~~vp~~PGLGv~~d~~~l~~~~~~ 363 (382)
T PRK14017 294 AACLQVDAVSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKVRERAKT 363 (382)
T ss_pred HHHHHHHHhCccceeeeecccccccchhhHHHhcccCCCCcccCCeEECCCCCcCCcCCCHHHHHHhhhc
Confidence 9999999999886554421 11111111 111 457789999999999999999999999998754
|
|
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=493.40 Aligned_cols=339 Identities=20% Similarity=0.281 Sum_probs=288.1
Q ss_pred EEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcC---C--cEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCC--
Q 013681 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSN---G--CVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT-- 142 (438)
Q Consensus 70 i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~---G--~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~-- 142 (438)
++++.+++|+++||.++.++++.++.++|+|+||+ | ++||||+.. +. ........+.+.|.|+|++|.
T Consensus 3 ~~~~~~~~Pl~~p~~~a~~~~~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-~~----~~~~~~i~~~~~p~LiG~dp~~~ 77 (385)
T cd03326 3 VAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSI-GR----YAQGGLLRERFIPRLLAAAPDSL 77 (385)
T ss_pred eeeEEEecCCCCCccCceeeeeccEEEEEEEEeccccCCCceeEEEeccC-Cc----hhHHHHHHHHHHHHhcCCChHHh
Confidence 45678889999999999999999999999999998 9 999999862 11 111111124478999999998
Q ss_pred --------CHHHHHHHHHHHC--CCC-hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC------CCceeeeeeeC----
Q 013681 143 --------TLNFALDEIARIL--PGS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA------SNSLSTAITIP---- 201 (438)
Q Consensus 143 --------~~~~~~~~l~~~~--~g~-~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~------~~~ip~~~~i~---- 201 (438)
+++.+|+.|+... .++ ....+++||||||||++||..|+|||+||||. ++++|+|.+.+
T Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~v~~y~~~~~~~~ 157 (385)
T cd03326 78 LDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYYP 157 (385)
T ss_pred hhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCeEEEEEecCCCCC
Confidence 4499999997632 122 23468999999999999999999999999984 46899998754
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
..+++++.+++++++++||+.||+|+|. ++++|+++++++|+ ++|++.|+||||++|++++|++++++|+++++ .|
T Consensus 158 ~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~--~~ 235 (385)
T cd03326 158 GDDLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGL--RW 235 (385)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCC--CE
Confidence 3477888899999999999999999986 78899999999998 58999999999999999999999999999997 59
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc----cEEEecCCcch-HHHHHHHHHHHHHcC
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA----SVVNIKLAKFG-VLGTLQIIKATRKSG 354 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~----d~i~lk~~~~G-i~~~~~~~~~A~~~g 354 (438)
||||++++|++++++|++ ++++||++||++.++.+++++++.+++ |++|+|++++| ++++++++++|+++|
T Consensus 236 iEeP~~~~d~~~~~~L~~----~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~g 311 (385)
T cd03326 236 YEEPGDPLDYALQAELAD----HYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHG 311 (385)
T ss_pred EECCCCccCHHHHHHHHh----hCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHcC
Confidence 999999999999999986 689999999999999999999999887 99999999997 999999999999999
Q ss_pred Ce---EEEccCCchhHHHHHHHHHHhhcCCcceee----cCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhh
Q 013681 355 LH---LMIDGMIETRLATGFALHLAAGLGCIKYVN----LNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427 (438)
Q Consensus 355 i~---~~~~s~~es~ig~~a~~hla~al~~~~~~e----~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~ 427 (438)
++ +++|+ +..+++|+++++++. +++ ++.++ +.+.+++.++||++.+|++||||+|+|+++++
T Consensus 312 i~~~~~~pH~------~~~a~lhl~aa~~~~-~~e~~~~~~~~~----~~~~~~~~~~~G~i~~p~~PGlGield~~~~~ 380 (385)
T cd03326 312 WSRRRFFPHG------GHLMSLHIAAGLGLG-GNESYPDVFQPF----GGFADGCKVENGYVRLPDAPGIGFEGKAELAA 380 (385)
T ss_pred CCCceeecch------HHHHHHHHHhcCCCc-eeEEeccccchh----hhcCCCCceeCCEEECCCCCCCCcccCHHHHH
Confidence 98 77765 346788999988752 233 22332 22345677899999999999999999999999
Q ss_pred hcc
Q 013681 428 CTQ 430 (438)
Q Consensus 428 ~~~ 430 (438)
+|+
T Consensus 381 ~~~ 383 (385)
T cd03326 381 EMR 383 (385)
T ss_pred HHh
Confidence 986
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=491.03 Aligned_cols=340 Identities=22% Similarity=0.339 Sum_probs=302.1
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCCCH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTTL 144 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~~~ 144 (438)
||++|+++.+++|++.| .++.+.++.++|+|+|++|++||||+.+.+. .+ .....+++ ++|.|.|+++.++
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--~~--~~~~~l~~~~~p~l~G~~~~~~ 72 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--PS--AVAAAIEDLLAPLLIGRDPLDI 72 (357)
T ss_pred CeeEEEEEEEecCCccc----ccccccceEEEEEEEeCCCCEEEEeccCCCC--ch--HHHHHHHHHHHHHccCCChHHH
Confidence 58999999999999998 5667788999999999999999999987543 11 12233454 8999999999999
Q ss_pred HHHHHHHHHHCCCC----hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCC--CHHHHHHHHHHHhh
Q 013681 145 NFALDEIARILPGS----EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAV--SPAEASELASKYCK 217 (438)
Q Consensus 145 ~~~~~~l~~~~~g~----~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~--~~~~~~~~~~~~~~ 217 (438)
+.+|+.|.+...++ ..+++++|||+||||++||..|+|||+||||. ++++|+|.+++.. +++++.+.++++++
T Consensus 73 ~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~ 152 (357)
T cd03316 73 ERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAVA 152 (357)
T ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCccCCceeeEEecCCCCCCHHHHHHHHHHHHH
Confidence 99999998754322 34678999999999999999999999999998 8899999987655 68999999999999
Q ss_pred cCCcEEEEecCCC------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChh
Q 013681 218 LGFSTLKLNVGRN------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290 (438)
Q Consensus 218 ~Gf~~iKlKvG~d------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~ 290 (438)
+||+.||+|+|.+ ++.|++++++||+ .++++.|++|+|++|++++|++++++|+++++ .|||||+++++++
T Consensus 153 ~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~ 230 (357)
T cd03316 153 EGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDLE 230 (357)
T ss_pred cCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCHH
Confidence 9999999999974 6899999999999 57899999999999999999999999999987 5999999999999
Q ss_pred hHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHH
Q 013681 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (438)
Q Consensus 291 ~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (438)
.+++|++ ++++||++||++.++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +|+.
T Consensus 231 ~~~~l~~----~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~i~~ 305 (357)
T cd03316 231 GLARLRQ----ATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-PIGL 305 (357)
T ss_pred HHHHHHH----hCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-HHHH
Confidence 9999986 68999999999999999999999999999999999998 9999999999999999999999866 9999
Q ss_pred HHHHHHHhhcCCcceeecCCCc-ccccCCCCCceeeeCcEEecCCCCCccce
Q 013681 370 GFALHLAAGLGCIKYVNLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (438)
Q Consensus 370 ~a~~hla~al~~~~~~e~~~pl-~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 420 (438)
++++|+++++++..+.|++.+. ....+++..++.++||++.+|++||||++
T Consensus 306 aa~~hla~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 357 (357)
T cd03316 306 AASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRPGLGVE 357 (357)
T ss_pred HHHHHHHHhCcChheEEeecccchhhHhhccCCCeeeCCEEECCCCCCCCCC
Confidence 9999999999998888877653 33445566778899999999999999986
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-62 Score=490.33 Aligned_cols=330 Identities=17% Similarity=0.269 Sum_probs=282.0
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLN 145 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~ 145 (438)
+|++|+++.+ + ++.++|+|+|++|++||||+.+.. +.+. ....++.+.|.|.|+++.+++
T Consensus 1 ~I~~i~~~~~--~--------------~~~~~V~i~~~~G~~G~GE~~~~~--~~~~--~~~~~~~l~p~l~G~d~~~~~ 60 (352)
T cd03325 1 KITKIETFVV--P--------------PRWLFVKIETDEGVVGWGEPTVEG--KART--VEAAVQELEDYLIGKDPMNIE 60 (352)
T ss_pred CeEEEEEEEE--C--------------CCEEEEEEEECCCCEEEeccccCC--cchH--HHHHHHHHHHHhCCCCHHHHH
Confidence 5788888654 1 246899999999999999997521 1121 222345689999999999999
Q ss_pred HHHHHHHHH--CCCC-hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCc
Q 013681 146 FALDEIARI--LPGS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFS 221 (438)
Q Consensus 146 ~~~~~l~~~--~~g~-~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~ 221 (438)
.+|+.|... ..++ ..+++++||||||||++||..|+|||+||||. ++++|+|.+++..+++++.+++++++++||+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~ 140 (352)
T cd03325 61 HHWQVMYRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGFT 140 (352)
T ss_pred HHHHHHHHhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 999999653 2222 24578999999999999999999999999996 7899999988778999998899999999999
Q ss_pred EEEEecCC---------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhh
Q 013681 222 TLKLNVGR---------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 222 ~iKlKvG~---------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~ 291 (438)
+||+|+|. ++++|+++|+++|+ .+|+++||||||++|++++|++++++|+++++ .|||||++++|+++
T Consensus 141 ~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~ 218 (352)
T cd03325 141 AVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRL--LFIEEPVLPENVEA 218 (352)
T ss_pred EEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCC--cEEECCCCccCHHH
Confidence 99999984 46889999999999 57999999999999999999999999999987 49999999999999
Q ss_pred HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHH
Q 013681 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 292 ~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~ 370 (438)
|++|++ ++++||++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+|+++
T Consensus 219 ~~~L~~----~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~-~s~i~~~ 293 (352)
T cd03325 219 LAEIAA----RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHCP-LGPIALA 293 (352)
T ss_pred HHHHHH----hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccCC-CChHHHH
Confidence 999986 68999999999999999999999999999999999997 99999999999999999999996 8999999
Q ss_pred HHHHHHhhcCCcceee--cCCCccccc----CCCC-CceeeeCcEEecCCCCCccceeC
Q 013681 371 FALHLAAGLGCIKYVN--LNTPFLLSE----DPFV-GGCEVSGAIYNFTNARGQGGFLK 422 (438)
Q Consensus 371 a~~hla~al~~~~~~e--~~~pl~~~~----~~~~-~~~~~~~G~~~~p~~pGlGv~ld 422 (438)
+++|+++++++..+.+ ++.+....+ +.+. .++.++||++.+|++||||+++|
T Consensus 294 a~~hlaa~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGLGi~~d 352 (352)
T cd03325 294 ASLHVDASTPNFLIQEQSLGIHYNEGDDLLDYLVDPEVFDMENGYVKLPTGPGLGIEID 352 (352)
T ss_pred HHHHHHHhcccHHhhhcccccCcccchhhhhhhccCCCCeeeCCEEECCCCCccCeeeC
Confidence 9999999998865543 222222111 1233 56788999999999999999987
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=489.10 Aligned_cols=336 Identities=14% Similarity=0.163 Sum_probs=286.7
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHH-HHhhHhcCCCCCCH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPTTL 144 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~i~~~l~g~~~~~~ 144 (438)
||++|+.+.. . |. ++.++|+|+|++|++||||+.+.. +. ......++ .+.|.|.|+++.++
T Consensus 1 kI~~ie~~~~-~----~~---------~~~vlV~v~td~G~~G~GE~~~~~--~~--~~~~~~i~~~l~p~l~G~d~~~~ 62 (361)
T cd03322 1 KITAIEVIVT-C----PG---------RNFVTLKITTDQGVTGLGDATLNG--RE--LAVKAYLREHLKPLLIGRDANRI 62 (361)
T ss_pred CeEEEEEEEE-C----CC---------CCEEEEEEEeCCCCeEEEecccCC--CH--HHHHHHHHHHHHHHcCCCChhHH
Confidence 6889998543 2 21 246899999999999999986321 11 12222343 48899999999999
Q ss_pred HHHHHHHHHHC--C-CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCC
Q 013681 145 NFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (438)
Q Consensus 145 ~~~~~~l~~~~--~-g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (438)
+.+|+.|+... . +....++++|||+||||++||..|+|||+||||. ++++|+|.+.+..+++++.+++++++++||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~ya~~~~~~~~~~~~~a~~~~~~Gf 142 (361)
T cd03322 63 EDIWQYLYRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQGY 142 (361)
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCccCeeeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 99999997631 2 2223468999999999999999999999999996 789999977666678889899999999999
Q ss_pred cEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 221 STLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 221 ~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
+.||+|+ +++|+++|+ .++++.|++|||++|++++|++++++|+++++ .|||||++++|+++|++|++
T Consensus 143 ~~~KiKv-------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~-- 211 (361)
T cd03322 143 RAIRVQL-------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRL--FWMEDPTPAENQEAFRLIRQ-- 211 (361)
T ss_pred CeEeeCH-------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCC--CEEECCCCcccHHHHHHHHh--
Confidence 9999998 889999999 57899999999999999999999999999997 49999999999999999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAA 377 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~ 377 (438)
++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +|+|++++++|+++
T Consensus 212 --~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~laa 289 (361)
T cd03322 212 --HTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLDL 289 (361)
T ss_pred --cCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHHh
Confidence 68999999999999999999999999999999999998 999999999999999999999887 69999999999999
Q ss_pred hcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 378 GLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 378 al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
++++..+.++........+++.+++.++||++.+|++||||+++|++++++|+++
T Consensus 290 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d~~~l~~~~~~ 344 (361)
T cd03322 290 WVPNFGIQEYMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEIDEKAAAKFPYV 344 (361)
T ss_pred hcCcceEEEeccccchHHHhcCCCCeecCCeEeCCCCCccCceECHHHHhhCCCC
Confidence 9888665564321112234566678889999999999999999999999999653
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=477.42 Aligned_cols=309 Identities=17% Similarity=0.261 Sum_probs=266.3
Q ss_pred EEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHC--C--CChhhHHHHHHHH
Q 013681 95 NVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTTLNFALDEIARIL--P--GSEFASVRAGVEM 169 (438)
Q Consensus 95 ~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~i~~~l~g~~~~~~~~~~~~l~~~~--~--g~~~~sa~~aie~ 169 (438)
.++|||+|++|++||||+.+. .. ....+ +.+.|.|+|+++.+++.+|+.|++.. . +....++++||||
T Consensus 11 ~v~V~i~td~Gi~G~GE~~~~----~~---~~~~i~~~l~p~liG~dp~~~~~~~~~l~~~~~~~~~~~~~~~a~said~ 83 (341)
T cd03327 11 WLFVEIETDDGTVGYANTTGG----PV---ACWIVDQHLARFLIGKDPSDIEKLWDQMYRATLAYGRKGIAMAAISAVDL 83 (341)
T ss_pred EEEEEEEECCCCeEEecCCCc----hH---HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhccccCCccHHHhHHHHHHH
Confidence 589999999999999998531 11 11223 45899999999999999999997642 1 1223468999999
Q ss_pred HHHHHHHHHCCCCHHHHhCCC-CCceeeeeee-CCCCHHHHHHHHHHHhhcCCcEEEEecCC-------CchHHHHHHHH
Q 013681 170 ALIDAVANSIDIPLWRLFGGA-SNSLSTAITI-PAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQA 240 (438)
Q Consensus 170 AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i-~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-------d~~~di~~l~a 240 (438)
||||++||..|+|||+||||. ++++|+|++. ...+++++.+++++++++||++||+|+|. ++++|++++++
T Consensus 84 AlwDl~gK~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~a 163 (341)
T cd03327 84 ALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRA 163 (341)
T ss_pred HHHHhcccccCCCHHHHcCCCcCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999996 7899999874 35688999999999999999999999973 35889999999
Q ss_pred HHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH
Q 013681 241 IHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (438)
Q Consensus 241 iR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~ 319 (438)
||+ .+|++.|++|||++|++++|++++++|+++++ .|||||++++|+++|++|++ ++++||++||++.+..++
T Consensus 164 vr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~~pIa~gE~~~~~~~~ 237 (341)
T cd03327 164 IREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYEL--RWIEEPLIPDDIEGYAELKK----ATGIPISTGEHEYTVYGF 237 (341)
T ss_pred HHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCC--ccccCCCCccCHHHHHHHHh----cCCCCeEeccCccCHHHH
Confidence 999 57999999999999999999999999999997 49999999999999999986 789999999999999999
Q ss_pred HHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCC--Ccc----
Q 013681 320 QKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT--PFL---- 392 (438)
Q Consensus 320 ~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~--pl~---- 392 (438)
+++++.+++|++|+|++++| ++++++++++|+++|+++++|+. ..+++|++++++|..+.|+.. +..
T Consensus 238 ~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~~------~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~ 311 (341)
T cd03327 238 KRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHAS------QIYNYHFIMSEPNSPFAEYLPNSPDEVGNP 311 (341)
T ss_pred HHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccccH------HHHHHHHHHhCcCceeEEecccccccccch
Confidence 99999999999999999997 99999999999999999999972 458899999999977776532 111
Q ss_pred cccCCCCCceeeeCcEEecCCCCCccceeC
Q 013681 393 LSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (438)
Q Consensus 393 ~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld 422 (438)
+..+++.+++.++||++.+|++||||+++|
T Consensus 312 ~~~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 312 LFYYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred hHHHhccCCCcccCCeEECCCCCccCeecC
Confidence 113455566778999999999999999987
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-60 Score=483.19 Aligned_cols=343 Identities=18% Similarity=0.241 Sum_probs=277.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCe--eEeeeeEEEEEEEEcC-CcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLS--SVENVENVAIRVELSN-GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPP 141 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~--~~~~~~~~lV~v~t~~-G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~ 141 (438)
+||++++++.+++|+++|+..+.. .....+.++|+|+||+ |++||||+..... +.+. ....++.++|.|+|+++
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~~~-~~~~--~~~~~~~lap~liG~d~ 77 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTIGR-GNEI--VCAAIEALAHLVVGRDL 77 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccCCC-chHH--HHHHHHHHHHHhCCCCH
Confidence 589999999999999999865433 3344578999999999 9999999864311 1111 11223568999999999
Q ss_pred CCHHHHHHHHHHHCC--------C---ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-C------------------
Q 013681 142 TTLNFALDEIARILP--------G---SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-S------------------ 191 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~--------g---~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~------------------ 191 (438)
.+++.+++.+.+.+. + .....+++||||||||++||.+|+|||+||||. +
T Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~~~~ 157 (415)
T cd03324 78 ESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALTP 157 (415)
T ss_pred HHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccccCH
Confidence 988554444433221 1 122468999999999999999999999999993 2
Q ss_pred -----------------------Cceeeeeee-C--CCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-h
Q 013681 192 -----------------------NSLSTAITI-P--AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-V 244 (438)
Q Consensus 192 -----------------------~~ip~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~ 244 (438)
+++|+|.+. + ..+++++.+++++++++||++||+|+|.++++|+++++++|+ +
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~v 237 (415)
T cd03324 158 EEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREVI 237 (415)
T ss_pred HHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 578888642 2 247888999999999999999999999989999999999999 5
Q ss_pred CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhcccc---CCeEEEcCCCCCHHHHHH
Q 013681 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY---GISVVADESCRSLNDVQK 321 (438)
Q Consensus 245 ~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~---~iPIa~dEsl~~~~d~~~ 321 (438)
||++.|+||+|++|++++|++++++|+++++ .|||||++++|+++|++|++ ++ ++||++||++.+..++++
T Consensus 238 G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEEP~~~~d~~~~~~L~~----~~~~~~iPIa~gEs~~~~~~~~~ 311 (415)
T cd03324 238 GPDNKLMIDANQRWDVPEAIEWVKQLAEFKP--WWIEEPTSPDDILGHAAIRK----ALAPLPIGVATGEHCQNRVVFKQ 311 (415)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhccCC--CEEECCCCCCcHHHHHHHHH----hcccCCCceecCCccCCHHHHHH
Confidence 8999999999999999999999999999997 49999999999999999986 45 699999999999999999
Q ss_pred HHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCC-----c---ceeecCCCcc
Q 013681 322 VMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC-----I---KYVNLNTPFL 392 (438)
Q Consensus 322 ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~-----~---~~~e~~~pl~ 392 (438)
+++.+++|++|+|++++| ++++++++++|+++|+++++|+ +++++++++|.++.+.. . .+.|+.. +
T Consensus 312 ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~---s~~~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~--~ 386 (415)
T cd03324 312 LLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA---GGVGLCELVQHLSMIDYICVSGSKEGRVIEYVD--H 386 (415)
T ss_pred HHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC---CHHHHHHHHHHhhcccccccCCccccchhhhHH--H
Confidence 999999999999999998 9999999999999999999996 67777777654432111 0 1122211 1
Q ss_pred cccCCCCCceeeeCcEEecCCCCCccceeC
Q 013681 393 LSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (438)
Q Consensus 393 ~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld 422 (438)
+ .+.+.+++.++||++.+|++||||+++.
T Consensus 387 ~-~~~~~~~~~~~dG~l~lp~~PGLGve~~ 415 (415)
T cd03324 387 L-HEHFVYPVVIQNGAYMPPTDPGYSIEMK 415 (415)
T ss_pred H-HhhccCCCeeeCCEEECCCCCccCeeeC
Confidence 1 2344567889999999999999999974
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=484.30 Aligned_cols=350 Identities=15% Similarity=0.227 Sum_probs=287.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCee-EeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSS-VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~-~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~ 143 (438)
..|+++++.++... ..|+....|. -+..+.++|+|+|++|++||||+.+ .+... ..++.++|.|+|+++.+
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~-----~~~~~--~~l~~lap~LiG~dp~~ 75 (441)
T TIGR03247 4 PVVTEMRVIPVAGH-DSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPG-----GEKIR--ATLEDARPLVVGKPLGE 75 (441)
T ss_pred CEEeEEEEEeeccc-cchhccccccCCCcceEEEEEEEECCCCeEEEeCCC-----cHHHH--HHHHHHHHHhcCCCHHH
Confidence 35666666555221 2233333222 2378899999999999999999853 11111 22356899999999999
Q ss_pred HHHHHHHHHHHCC-------CCh------hhHHHHHHHHHHHHHHHHHCCCCHHHHhC-CC-CCceeeeeee---C----
Q 013681 144 LNFALDEIARILP-------GSE------FASVRAGVEMALIDAVANSIDIPLWRLFG-GA-SNSLSTAITI---P---- 201 (438)
Q Consensus 144 ~~~~~~~l~~~~~-------g~~------~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg-g~-~~~ip~~~~i---~---- 201 (438)
++.+|+.|.+... +.. ..++++||||||||++||..|+|||+||| |. ++++|+|.+. +
T Consensus 76 ~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~r~~vp~y~~~~~ig~~~~ 155 (441)
T TIGR03247 76 YQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFFIGDRKR 155 (441)
T ss_pred HHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCccceEEEeeeeeecccccc
Confidence 9999999976431 111 35689999999999999999999999999 64 7899987541 1
Q ss_pred ----------------------CCCHHHHHHHHHHHhh-cCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCC
Q 013681 202 ----------------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEG 257 (438)
Q Consensus 202 ----------------------~~~~~~~~~~~~~~~~-~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~ 257 (438)
..+++++.++++++++ +||++||+|+|. +.++|+++++++|+.++++.|+||||++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d~~L~vDAN~~ 235 (441)
T TIGR03247 156 TSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQARITLDPNGA 235 (441)
T ss_pred ccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 1368888888888776 599999999996 5789999999999977999999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEecCCCCCC----hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d----~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
|++++|++++++|+++ + .|||||++++| +++|++|++ ++++||++||++.++.+++++++.+++|++|+
T Consensus 236 wt~~~Ai~~~~~Le~~-~--~~iEePv~~~d~~~~~~~la~Lr~----~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~ 308 (441)
T TIGR03247 236 WSLDEAIALCKDLKGV-L--AYAEDPCGAEQGYSGREVMAEFRR----ATGLPTATNMIATDWRQMGHALQLQAVDIPLA 308 (441)
T ss_pred CCHHHHHHHHHHhhhh-h--ceEeCCCCcccccchHHHHHHHHH----hCCCCEEcCCccCCHHHHHHHHHhCCCCEEec
Confidence 9999999999999998 7 49999999998 899999986 69999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccc--cCCCCCceeeeCcEEec
Q 013681 334 KLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLS--EDPFVGGCEVSGAIYNF 411 (438)
Q Consensus 334 k~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~--~~~~~~~~~~~~G~~~~ 411 (438)
|+...|++++++++++|+++|+++++|+..+++|+.+|++|+++++++.. .+++.++... ++++.+++.++||++.+
T Consensus 309 d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~-~~~d~~~~~~~~~~l~~~p~~~~dG~i~v 387 (441)
T TIGR03247 309 DPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI-TAIDTHWIWQDGQRLTKEPLEIKGGKIQV 387 (441)
T ss_pred cCCcchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc-cccCcchhhhcccccccCCceeECCEEec
Confidence 99765799999999999999999999998889999999999999887632 3444443322 34555678889999999
Q ss_pred CCCCCccceeChhhhhhcc
Q 013681 412 TNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 412 p~~pGlGv~ld~~~l~~~~ 430 (438)
|++||||+++|++++++|.
T Consensus 388 p~~PGLGve~d~~~l~~~~ 406 (441)
T TIGR03247 388 PDKPGLGVEIDMDAVDAAH 406 (441)
T ss_pred CCCCCCCceeCHHHHHHHH
Confidence 9999999999999999995
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-60 Score=479.32 Aligned_cols=356 Identities=24% Similarity=0.360 Sum_probs=303.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|+|.+|+.+.+.+|+..|+.++.++.+.+..++|+++|++|++|||||.+...... ...... ..+.+.+.|.++.++
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~-~~~~~~--~~~~~~l~g~d~~~i 77 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARY-GEEAEA--VLLAPLLIGRDPFDI 77 (372)
T ss_pred CCceeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCcccccc-hhhhhH--HHHHHHhcCCCHHHH
Confidence 56788899999999999999999888999999999999999999999998532111 111111 157889999999999
Q ss_pred HHHHHHHHHHC---CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCC-CCHHHH-HHHHHHHhhc
Q 013681 145 NFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPA-VSPAEA-SELASKYCKL 218 (438)
Q Consensus 145 ~~~~~~l~~~~---~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~-~~~~~~-~~~~~~~~~~ 218 (438)
+.+|+.++... .++...++++|||+||||++||..|+|||+||||. ++++++|.+... .+++++ .+.++.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~~~ 157 (372)
T COG4948 78 ERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVRDEVRAYASGGGGEDPEEMAAEAARALVEL 157 (372)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHHhc
Confidence 99999998753 13334679999999999999999999999999998 578999888765 344444 5666666669
Q ss_pred CCcEEEEecCC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHH
Q 013681 219 GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (438)
Q Consensus 219 Gf~~iKlKvG~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~ 296 (438)
||+.+|+|+|. +.+.|+++++++|++ +++++|++|||++||+++|++++++|+++++ .|||||++++|++++++|+
T Consensus 158 G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~l~ 235 (372)
T COG4948 158 GFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGL--EWIEEPLPPDDLEGLRELR 235 (372)
T ss_pred CCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCc--ceEECCCCccCHHHHHHHH
Confidence 99999999997 567999999999996 5699999999999999999999999999996 6999999999999999998
Q ss_pred HhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHH
Q 013681 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (438)
Q Consensus 297 ~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (438)
+ .+++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+.+++.+.+|. +++++++|++|+
T Consensus 236 ~----~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v~~h~--~~~i~~aa~~hl 309 (372)
T COG4948 236 A----ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVGPHV--EGPISLAAALHL 309 (372)
T ss_pred h----cCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCceeccC--chHHHHHHHHHH
Confidence 6 56799999999999999999999999999999999998 9999999999997777776665 599999999999
Q ss_pred HhhcCCcceeecCCCcccccC-----CCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 376 AAGLGCIKYVNLNTPFLLSED-----PFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 376 a~al~~~~~~e~~~pl~~~~~-----~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+++.++ +.+++.|..+..+ ++.++...+||++.+|++||||+++|++.+++|.+..
T Consensus 310 a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~~~~~~~~~~~~ 370 (372)
T COG4948 310 AAALPN--FGDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELDEDALAKYRVRY 370 (372)
T ss_pred hhccch--hhhccccccccccchhhhhccCCccccCCeEeCCCCCCCCccccHHHHHhccccc
Confidence 998744 4466666554333 4666677899999999999999999999999998754
|
|
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=460.85 Aligned_cols=316 Identities=20% Similarity=0.292 Sum_probs=274.8
Q ss_pred EEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHHH-HHHHHH-HhhHhcCCCCCCHHHHH
Q 013681 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVRE-ACQFLRQSPPTTLNFAL 148 (438)
Q Consensus 73 ~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~~-i~~~l~g~~~~~~~~~~ 148 (438)
+.+++|+++||.++.+++++++.++|+|+|++|++||||+.+. |.++++.... ...+++ +.|.+.| ++.+++.++
T Consensus 1 ~~~~lp~~~p~~~a~~~~~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~ 79 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHPSEAL 79 (324)
T ss_pred CeecccCcCCEEcCCeeEecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 3578999999999999999999999999999999999999864 5555543332 333444 5789999 999999999
Q ss_pred HHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecC
Q 013681 149 DEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG 228 (438)
Q Consensus 149 ~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG 228 (438)
+.+.+ ..++ +++++||||||||++||..|+|+|+|||+.++++|+|.+++..+++++.+++++++++||++||+|+|
T Consensus 80 ~~~~~-~~~~--~~a~said~AlwDl~gk~~g~Pl~~llGg~~~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~ 156 (324)
T TIGR01928 80 ELVRS-LKGT--PMAKAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT 156 (324)
T ss_pred HHHHH-ccCC--cHHHHHHHHHHHHHHHhhhCCcHHHHhCCCCCeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 98865 3333 56899999999999999999999999999889999999988889999999999999999999999997
Q ss_pred CCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 229 RNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 229 ~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
. +.|+++++++|+.+|+++|++|||++|++++| +++++|+++++ .|||||++++|++++++|++ ++++||+
T Consensus 157 ~--~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~~pia 227 (324)
T TIGR01928 157 P--QIMHQLVKLRRLRFPQIPLVIDANESYDLQDF-PRLKELDRYQL--LYIEEPFKIDDLSMLDELAK----GTITPIC 227 (324)
T ss_pred C--chhHHHHHHHHHhCCCCcEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCChhHHHHHHHHHh----hcCCCEe
Confidence 4 67899999999987999999999999999986 67899999987 59999999999999999986 6899999
Q ss_pred EcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeec
Q 013681 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL 387 (438)
Q Consensus 309 ~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~ 387 (438)
+||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|+++..++....|.
T Consensus 228 ~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 228 LDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999887765433344
Q ss_pred C-CCcccccCCCCCc
Q 013681 388 N-TPFLLSEDPFVGG 401 (438)
Q Consensus 388 ~-~pl~~~~~~~~~~ 401 (438)
. +..++..|+..++
T Consensus 308 ~~~~~~~~~d~~~~~ 322 (324)
T TIGR01928 308 SPSGYYFDQDIVAPS 322 (324)
T ss_pred CCccccccccccCCC
Confidence 3 2234445554443
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >PRK15129 L-Ala-D/L-Glu epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-57 Score=450.82 Aligned_cols=316 Identities=24% Similarity=0.341 Sum_probs=273.0
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhc-CCCCCCHHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFA 147 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~-g~~~~~~~~~ 147 (438)
+++++++++|++.||.++.++.+.++.++|+|+ ++|.+||||++|.+.++.........+..++|.|. +. +.+.
T Consensus 3 ~i~~~~~~lpl~~p~~~a~g~~~~~~~~lv~l~-~~G~~G~GE~~p~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~- 77 (321)
T PRK15129 3 TVKVYEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGL---TREA- 77 (321)
T ss_pred eEEEEEEEeeccCCEEccCceEEeeeEEEEEEE-eCCeEEEEeeCCcCCCCCCHHHHHHHHHHHHHHHhCCC---CHHH-
Confidence 789999999999999999999999999999998 58999999999987765322223344556788886 32 1222
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEe
Q 013681 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (438)
Q Consensus 148 ~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (438)
+...+ + .+++++||||||||++||..|+|+|+||||. ++++|+|++++..+++++.+++++++++||++||+|
T Consensus 78 ---~~~~~-~--~~~a~~aid~AlwDl~gk~~~~pl~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlK 151 (321)
T PRK15129 78 ---LQKLL-P--AGAARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVK 151 (321)
T ss_pred ---HHhhc-c--ChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 21112 2 2578999999999999999999999999996 678999999988899999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCe
Q 013681 227 VGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (438)
Q Consensus 227 vG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP 306 (438)
+|. +.|+++++++|+..+++.||+|||++|++++|++++++|+++++ .|||||++++|+++++++ ++++|
T Consensus 152 v~~--~~d~~~v~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~l~~~------~~~~p 221 (321)
T PRK15129 152 LDN--HLISERMVAIRSAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IHPLP 221 (321)
T ss_pred CCC--chHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCc--eEEECCCCCCcHHHHHHh------ccCCC
Confidence 975 46899999999977899999999999999999999999999987 599999999998887765 35899
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee
Q 013681 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (438)
Q Consensus 307 Ia~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~ 385 (438)
|++||++.++.+++++. +++|++|+|++++| ++++++++++|+++|+++|+|+|+||+++.++++|+ +++..+.
T Consensus 222 ia~dEs~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~es~i~~~a~~~l---~~~~~~~ 296 (321)
T PRK15129 222 ICADESCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPL---VPQVRFA 296 (321)
T ss_pred EecCCCCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecchHHHHHHHHHHHH---hcCCcEe
Confidence 99999999999998884 68999999999998 999999999999999999999999999999999999 3566778
Q ss_pred ecCCCcccccCCCCCceeeeCcEEec
Q 013681 386 NLNTPFLLSEDPFVGGCEVSGAIYNF 411 (438)
Q Consensus 386 e~~~pl~~~~~~~~~~~~~~~G~~~~ 411 (438)
|+++++++.+|+. +++.+++|++.+
T Consensus 297 dl~~~~~~~~d~~-~~~~~~~G~~~~ 321 (321)
T PRK15129 297 DLDGPTWLAVDVE-PALQFTTGELHL 321 (321)
T ss_pred cCCCchhhcccCC-CCeEEeCCEEeC
Confidence 9999988888874 568889998753
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-57 Score=447.87 Aligned_cols=311 Identities=35% Similarity=0.563 Sum_probs=278.7
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchH-HHHHHHHHHHhhHhcCCCCCCHHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQ-TKALVKVREACQFLRQSPPTTLNFA 147 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~-~~~~~~~~~i~~~l~g~~~~~~~~~ 147 (438)
+++++.+++|+++|+.++.++...++.++|||+|+ |++|||||.+.++++++. ......++.++|.|.|+++. ++.+
T Consensus 1 ~i~~~~~~~p~~~p~~~~~~~~~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~ 78 (316)
T cd03319 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR-LEKL 78 (316)
T ss_pred CeEEEEEEeeccccEEeeCceEEeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-HHHH
Confidence 36789999999999999999999999999999999 999999999887655532 22333455679999999999 9999
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHh-CCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEe
Q 013681 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLF-GGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (438)
Q Consensus 148 ~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Ll-gg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (438)
|+.|.....+ .+++++|||+||||++||..|+|+|+|| |+.++++|+|++++..+++++.+.+++++++||+.||+|
T Consensus 79 ~~~l~~~~~~--~~~a~~aid~AlwDl~gk~~g~pv~~ll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik 156 (316)
T cd03319 79 LEALQELLPG--NGAARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIK 156 (316)
T ss_pred HHHHHHhccC--ChHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999875543 3568999999999999999999999995 455789999988888899999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCe
Q 013681 227 VGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (438)
Q Consensus 227 vG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP 306 (438)
+|.+.+.|+++++++|+..++++|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ .+++|
T Consensus 157 ~g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~ip 230 (316)
T cd03319 157 LGGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRD----KSPLP 230 (316)
T ss_pred eCCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHh----cCCCC
Confidence 9988899999999999953399999999999999999999999999987 59999999999999999986 68999
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee
Q 013681 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (438)
Q Consensus 307 Ia~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~ 385 (438)
|++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++|++|++++++|+++++ ..+.
T Consensus 231 Ia~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~--~~~~ 308 (316)
T cd03319 231 IMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSIAAAAHLAAAK--ADFV 308 (316)
T ss_pred EEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHHHHhhc--CcEE
Confidence 999999999999999999999999999999997 9999999999999999999999999999999999999987 4455
Q ss_pred ecCCCc
Q 013681 386 NLNTPF 391 (438)
Q Consensus 386 e~~~pl 391 (438)
|+++++
T Consensus 309 ~~~~~~ 314 (316)
T cd03319 309 DLDGPL 314 (316)
T ss_pred eccCcc
Confidence 655543
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=456.95 Aligned_cols=317 Identities=15% Similarity=0.217 Sum_probs=260.4
Q ss_pred EeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHHHHHHHC--CC--ChhhHHHH
Q 013681 90 VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL--PG--SEFASVRA 165 (438)
Q Consensus 90 ~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~~l~~~~--~g--~~~~sa~~ 165 (438)
.+.++.++|||+|++|++||||+.+. +. ......+.+.|.|+|+++.+++.+|+.|++.. .+ ....++++
T Consensus 53 ~~~~~~vlVrI~td~G~~G~Ge~~~~-----~~-~~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~s 126 (394)
T PRK15440 53 INVLGTLVVEVEAENGQVGFAVSTAG-----EM-GAFIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKGLVMNTIS 126 (394)
T ss_pred eeccceEEEEEEECCCCEEEEeCCCc-----HH-HHHHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCccHhhhHHH
Confidence 35678899999999999999996431 11 11122245889999999999999999997642 22 22346899
Q ss_pred HHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecC--C-----CchHHHHH
Q 013681 166 GVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG--R-----NITADFDV 237 (438)
Q Consensus 166 aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG--~-----d~~~di~~ 237 (438)
|||+|||||+||.+|+|||+||||. ++++|+|.+.. .++ + ..++||+++|+|+| + ++++|+++
T Consensus 127 aIDiALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~--~~~-~------a~~~Gf~~~Kik~~~g~~~g~~~~~~di~~ 197 (394)
T PRK15440 127 CVDLALWDLLGKVRGLPVYKLLGGAVRDELQFYATGA--RPD-L------AKEMGFIGGKMPLHHGPADGDAGLRKNAAM 197 (394)
T ss_pred HHHHHHHHHhhhHcCCcHHHHcCCCCCCeeEEEecCC--ChH-H------HHhCCCCEEEEcCCcCcccchHHHHHHHHH
Confidence 9999999999999999999999996 78999987532 222 1 13689999999994 2 35889999
Q ss_pred HHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCH
Q 013681 238 LQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL 316 (438)
Q Consensus 238 l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~ 316 (438)
|+++|+ +|+++.|+||||++|++++|++++++|+++++ .|||||++++|+++|++|++.. .+++||+.||++.++
T Consensus 198 v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l--~wiEEPl~~~d~~~~~~L~~~~--~~~i~ia~gE~~~~~ 273 (394)
T PRK15440 198 VADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGL--KWIEECLPPDDYWGYRELKRNA--PAGMMVTSGEHEATL 273 (394)
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--cceeCCCCcccHHHHHHHHHhC--CCCCceecCCCccCH
Confidence 999999 68999999999999999999999999999997 4999999999999999998621 245899999999999
Q ss_pred HHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecC--CCc--
Q 013681 317 NDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN--TPF-- 391 (438)
Q Consensus 317 ~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~--~pl-- 391 (438)
.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+. ..+++|++++++|..++|+. .|.
T Consensus 274 ~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH~~------~~~~~hl~aa~~n~~~~E~~~~~~~~~ 347 (394)
T PRK15440 274 QGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPHGS------SVYSHHFVITRTNSPFSEFLMMSPDAD 347 (394)
T ss_pred HHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeecccCH------HHHHHHHHhhCcCceeEEecccCcccc
Confidence 99999999999999999999997 99999999999999999999962 35788999999998887752 111
Q ss_pred ---ccccCCCCCceeeeCcEEecC--CCCCccceeChhhhhhccc
Q 013681 392 ---LLSEDPFVGGCEVSGAIYNFT--NARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 392 ---~~~~~~~~~~~~~~~G~~~~p--~~pGlGv~ld~~~l~~~~~ 431 (438)
....+.+...+.++||++.+| ++||||+++|++++..+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~G~l~vp~~~~PGlGveld~~~~~~~p~ 392 (394)
T PRK15440 348 TVVPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCNLKRPY 392 (394)
T ss_pred ccccchhhhhcCCCeeeCCEEECCCCCCCccCcccCHHHHhhCCC
Confidence 111111222356789999999 9999999999999966554
|
|
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=421.50 Aligned_cols=256 Identities=31% Similarity=0.499 Sum_probs=243.5
Q ss_pred EEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHH
Q 013681 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALD 149 (438)
Q Consensus 70 i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~ 149 (438)
|+++++++|+++||.++.++.+.++.++|+|+|++|.+||||+.
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~------------------------------------ 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------------------ 44 (265)
T ss_pred CEEEEEeecccCceEecceeEeccceEEEEEEECCCCEEEeccH------------------------------------
Confidence 46789999999999999999999999999999999999999984
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC
Q 013681 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR 229 (438)
Q Consensus 150 ~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~ 229 (438)
++|||+||||++||..|+|+|+|+|+.++++|+|++++..+++++.+++++++++||++||+|+|.
T Consensus 45 --------------~~aid~Al~Dl~gk~~g~pv~~llG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~ 110 (265)
T cd03315 45 --------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR 110 (265)
T ss_pred --------------HHHHHHHHHHHHHHHcCCcHHHHcCCCCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 679999999999999999999999998889999999888889999999999999999999999998
Q ss_pred CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 230 NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 230 d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
+.++|++++++||+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++.+|++++++|++ ++++||+
T Consensus 111 ~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipia 184 (265)
T cd03315 111 DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGL--DYVEQPLPADDLEGRAALAR----ATDTPIM 184 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHh----hCCCCEE
Confidence 889999999999995 6799999999999999999999999999987 59999999999999999986 6899999
Q ss_pred EcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCC
Q 013681 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 309 ~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~ 381 (438)
+||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|+++|++|++++++.
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~ 258 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRA 258 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999998763
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-52 Score=409.57 Aligned_cols=287 Identities=22% Similarity=0.290 Sum_probs=245.4
Q ss_pred EEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHH-HHHHHHHhhHhcCCCCCCHHHHHHHH
Q 013681 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA-LVKVREACQFLRQSPPTTLNFALDEI 151 (438)
Q Consensus 73 ~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~-~~~~~~i~~~l~g~~~~~~~~~~~~l 151 (438)
+.+++|++.||.++.++.+.++.++|+|++ +|++|||||.|.|.|++++.+. ...++.+.+.+.|.++.++..
T Consensus 1 ~~~~lpl~~p~~~a~g~~~~~~~~iv~l~~-~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~~----- 74 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLLARREGLIVRLTD-EGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAIDD----- 74 (307)
T ss_pred CcEeccCCCCcCcCceeEEeeeEEEEEEEE-CCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhccc-----
Confidence 357899999999999999999999999994 6999999999999888865443 335566888888776543321
Q ss_pred HHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-C
Q 013681 152 ARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-N 230 (438)
Q Consensus 152 ~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d 230 (438)
..+++++|||+||||+.||. +.| ....+...++++++++++.+++.+ ++||++||+|+|. +
T Consensus 75 -------~~~~~~~aie~Al~Dl~~k~-~~~--------~~~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG~~~ 136 (307)
T TIGR01927 75 -------QLPSVAFGFESALIELESGD-ELP--------PASNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVGVGE 136 (307)
T ss_pred -------cCcHHHHHHHHHHHHHhcCC-CCC--------cccccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeCCCC
Confidence 12578999999999999987 111 122233456677889988776665 7999999999996 7
Q ss_pred chHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEecCCCCCChhhHHHHHHhhccccCCe
Q 013681 231 ITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306 (438)
Q Consensus 231 ~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP 306 (438)
+++|+++|++||+. ++++.||+|||++|+.++|++++++|++ +++ .|||||++.+ +++++|++ ++++|
T Consensus 137 ~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~--~~~~~l~~----~~~~P 208 (307)
T TIGR01927 137 LAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRI--AFLEEPLPDA--DEMSAFSE----ATGTA 208 (307)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCc--eEEeCCCCCH--HHHHHHHH----hCCCC
Confidence 89999999999994 6789999999999999999999999997 776 5999999865 88999976 68999
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee
Q 013681 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV 385 (438)
Q Consensus 307 Ia~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~ 385 (438)
|++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|++++++.....
T Consensus 209 ia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaa~~~~~~~~ 288 (307)
T TIGR01927 209 IALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKLSPDPAA 288 (307)
T ss_pred EEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999877666
Q ss_pred ecCCCc
Q 013681 386 NLNTPF 391 (438)
Q Consensus 386 e~~~pl 391 (438)
.++++.
T Consensus 289 ~~~~~~ 294 (307)
T TIGR01927 289 VGFTTA 294 (307)
T ss_pred CCccHH
Confidence 666653
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-52 Score=403.15 Aligned_cols=250 Identities=28% Similarity=0.398 Sum_probs=231.0
Q ss_pred EEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHHH
Q 013681 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDE 150 (438)
Q Consensus 71 ~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~~ 150 (438)
+++.+++|+++||.++.++++.++.++|+|+|++|.+||||+.|.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~p~~---------------------------------- 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------------------------- 47 (263)
T ss_pred ccEEEEeecCCcccccCceEEEEeEEEEEEecCCCCeeEEeccchH----------------------------------
Confidence 4678899999999999999999999999999999999999998642
Q ss_pred HHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC
Q 013681 151 IARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR 229 (438)
Q Consensus 151 l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~ 229 (438)
+++||||||||+.||..| ||. ++++|+|.+++..++ ++.+.+++++++||++||+|+|.
T Consensus 48 ------------a~aaid~AlwDl~gk~~g-------gg~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg~ 107 (263)
T cd03320 48 ------------LAFGIESALANLEALLVG-------FTRPRNRIPVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVGA 107 (263)
T ss_pred ------------HHHHHHHHHhcccccccC-------CCCCccCcceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEECC
Confidence 589999999999999998 665 789999999988877 55566788889999999999996
Q ss_pred -CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeE
Q 013681 230 -NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (438)
Q Consensus 230 -d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPI 307 (438)
++++|+++++++|+. ++++.|++|||++|++++|++++++|+++++ .|||||++++|++++++|+ +++||
T Consensus 108 ~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~------~~~PI 179 (263)
T cd03320 108 TSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRI--EYIEQPLPPDDLAELRRLA------AGVPI 179 (263)
T ss_pred CChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCC--ceEECCCChHHHHHHHHhh------cCCCe
Confidence 678999999999995 6799999999999999999999999999987 4999999999999998874 68999
Q ss_pred EEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCc
Q 013681 308 VADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 308 a~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~ 382 (438)
++||++.++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|+++++++.
T Consensus 180 a~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~~ 255 (263)
T cd03320 180 ALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHLAAALPPL 255 (263)
T ss_pred eeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999997 9999999999999999999999999999999999999998863
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=398.45 Aligned_cols=295 Identities=20% Similarity=0.209 Sum_probs=247.5
Q ss_pred EEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHH-HHHHHHhhHhcCCCCCCHHH
Q 013681 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL-VKVREACQFLRQSPPTTLNF 146 (438)
Q Consensus 68 ~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~-~~~~~i~~~l~g~~~~~~~~ 146 (438)
++++++.+++|++.||.++.++.+.++.++|+|+ ++|++|||||.|.|.|++++.... ..+.+..+.+.+.+..+.
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~~~-- 78 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRLKTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCDDE-- 78 (322)
T ss_pred cceEEEEEEEecCCCceecceEEEEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCccccc--
Confidence 3789999999999999999999999999999997 789999999999999888654433 345553333433333221
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEe
Q 013681 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (438)
Q Consensus 147 ~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (438)
...++++++++++|+||+.||..+.|++.. .+++.++++++.++++++ +||++||+|
T Consensus 79 ----------~~~~~~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l~~~~~~~~~~~a~~~--~Gf~~~KvK 135 (322)
T PRK05105 79 ----------LSQYPSVAFGLSCALAELAGTLPQAANYRT-----------APLCYGDPDELILKLADM--PGEKVAKVK 135 (322)
T ss_pred ----------cccCcHHHHHHHHHHHHhcCCCCCCCCcce-----------eeeecCCHHHHHHHHHHc--CCCCEEEEE
Confidence 123468899999999999999999888621 234457889998888886 899999999
Q ss_pred cCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEecCCCCCChhhHHHHHHhhccc
Q 013681 227 VGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (438)
Q Consensus 227 vG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~ 302 (438)
+|. ++++|++++++||+..+++.||+|||++|++++|++++++|++ +++ .|||||++. .+++++|++ +
T Consensus 136 vG~~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~--~~~~~~l~~----~ 207 (322)
T PRK05105 136 VGLYEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRI--AFLEEPCKT--PDDSRAFAR----A 207 (322)
T ss_pred ECCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc--cEEECCCCC--HHHHHHHHH----h
Confidence 995 7899999999999966899999999999999999999999998 876 599999964 567888875 6
Q ss_pred cCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCC
Q 013681 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 303 ~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~ 381 (438)
+++||++||++.+.. ....+ .+++|++|+|++++| ++++++++++|+++|+++++||++||+||.+|++|+++++++
T Consensus 208 ~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~ 285 (322)
T PRK05105 208 TGIAIAWDESLREPD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAWLTP 285 (322)
T ss_pred CCCCEEECCCCCchh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHhcCC
Confidence 899999999999975 44444 568999999999998 999999999999999999999999999999999999999966
Q ss_pred cceeecCCCcccccCCC
Q 013681 382 IKYVNLNTPFLLSEDPF 398 (438)
Q Consensus 382 ~~~~e~~~pl~~~~~~~ 398 (438)
..+.+++++.++.+|+.
T Consensus 286 ~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 286 DTIPGLDTLDLMQAQLV 302 (322)
T ss_pred CCCCCCChHHHHhhccc
Confidence 56777888877776643
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=392.82 Aligned_cols=282 Identities=21% Similarity=0.292 Sum_probs=233.9
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHH-HHHHHHhhHhcCCCCCCHHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL-VKVREACQFLRQSPPTTLNFA 147 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~-~~~~~i~~~l~g~~~~~~~~~ 147 (438)
+++++++++|++.||.++.++.+.++.++|+|+|++|++||||+.|.|.|++++.+.. ..++.+.+.+.+. .
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~~------~- 76 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITPE------Q- 76 (320)
T ss_pred EEEEEEEEEecCCceEeccceEEEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCHH------H-
Confidence 5779999999999999999999999999999999999999999999998887654433 2233334443221 1
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEec
Q 013681 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNV 227 (438)
Q Consensus 148 ~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKv 227 (438)
...+. ..++++++|+|+|+.|+.++..+. ....+|++..+ .+++++.+++++++++||++||+|+
T Consensus 77 ~~~~~-----~~~~~~~~aie~A~d~~~~~~~~~--------~~~~~~~~~~i--~~~~~~~~~a~~~~~~G~~~~KvKv 141 (320)
T PRK02714 77 IFSIP-----DALPACQFGFESALENESGSRSNV--------TLNPLSYSALL--PAGEAALQQWQTLWQQGYRTFKWKI 141 (320)
T ss_pred HHhhh-----hcCCHHHHHHHHHHHHHhcccccC--------CcCCCceeeec--CCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 11111 113578999999944455554221 12345554444 5668888899999999999999999
Q ss_pred CC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEecCCCCCChhhHHHHHHhhccc
Q 013681 228 GR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (438)
Q Consensus 228 G~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~ 302 (438)
|. ++++|+++|++||+ .++++.|++|||++|+.++|+++++.|++ +++ .|||||++.+|++++++|++ +
T Consensus 142 G~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i--~~iEqP~~~~~~~~~~~l~~----~ 215 (320)
T PRK02714 142 GVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKI--EFIEQPLPPDQFDEMLQLSQ----D 215 (320)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCc--cEEECCCCcccHHHHHHHHH----h
Confidence 97 58899999999999 47899999999999999999999999998 676 59999999999999999986 6
Q ss_pred cCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCC
Q 013681 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 303 ~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~ 381 (438)
+++||++||++.+..+++++++.+++|++|+|++++| ++++ .++|+++|+++++||++||+||++|++|+++++++
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDAVFSSVFETAIGRKAALALAAELSR 292 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCEEEEechhhHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999997 9854 57899999999999999999999999999999875
|
|
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=396.57 Aligned_cols=286 Identities=17% Similarity=0.220 Sum_probs=243.1
Q ss_pred eeeEEEEEEEEcCCcEEEEEEecCCCCCchH-------HHH-HHHHH-HHhhHhcCCCCCCHHHHHHHHHHHC-CCChhh
Q 013681 92 NVENVAIRVELSNGCVGWGEVAVVPLVTGDQ-------TKA-LVKVR-EACQFLRQSPPTTLNFALDEIARIL-PGSEFA 161 (438)
Q Consensus 92 ~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~-------~~~-~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~~-~g~~~~ 161 (438)
..+.++|+|+|++|.+|||||.+. .|+++. .+. ...++ .+.|.|+|+++.+++.+++.|.... .+....
T Consensus 48 ~~~~vlV~i~tddG~~G~GE~~~~-~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~~~~ 126 (408)
T TIGR01502 48 PGESLSVLLVLEDGQVVHGDCAAV-QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRNLHT 126 (408)
T ss_pred cCcEEEEEEEECCCCEEEEEeecc-eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCcchh
Confidence 468899999999999999999984 556532 232 23344 4899999999999999999998763 121235
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHhC------CCCCceeeeeeeCC---CCHHHHHHHHHHHhhcC-CcEEEEecCCCc
Q 013681 162 SVRAGVEMALIDAVANSIDIPLWRLFG------GASNSLSTAITIPA---VSPAEASELASKYCKLG-FSTLKLNVGRNI 231 (438)
Q Consensus 162 sa~~aie~AL~Dl~gk~~g~Pl~~Llg------g~~~~ip~~~~i~~---~~~~~~~~~~~~~~~~G-f~~iKlKvG~d~ 231 (438)
++++|||+||||++||..|+|+|+||| +..+++|+|.+++. .++++|...+++++++| |+.+| |+|.+.
T Consensus 127 a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~K-kvG~~~ 205 (408)
T TIGR01502 127 AIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVE-ELGLDG 205 (408)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCcccee-eecCCH
Confidence 678999999999999999999999998 55689999999774 57899999999999998 99999 899865
Q ss_pred hHH-------HHHHHHHHhhCCCcEEEEeCCC------CCCHHHHHHHHHHhhh----CCCCCceEecCCCCCC----hh
Q 013681 232 TAD-------FDVLQAIHAVHPHCSFILDANE------GYTSEEAVEVLGKLND----MGVIPVLFEQPVHRDD----WS 290 (438)
Q Consensus 232 ~~d-------i~~l~aiR~~~~~~~L~vDAN~------~~s~~~A~~~l~~L~~----~~l~~~~iEqPl~~~d----~~ 290 (438)
.+| .++++++|+.+++..|++|+|+ +|++++|++++++|++ +++ |||||++.+| ++
T Consensus 206 ~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~---~iEqPv~~~d~~~~~e 282 (408)
T TIGR01502 206 EKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHL---RIEGPMDVGSRQAQIE 282 (408)
T ss_pred HHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCe---EEecCCCCCcchhhHH
Confidence 444 4566666644668899999998 9999999999999985 663 9999998865 99
Q ss_pred hHHHHHHhhc-cccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhH
Q 013681 291 GLHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRL 367 (438)
Q Consensus 291 ~~a~L~~~~r-~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~i 367 (438)
++++|++.++ +.+++||++||++.+++|++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||+|
T Consensus 283 ~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I 362 (408)
T TIGR01502 283 AMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNR 362 (408)
T ss_pred HHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHH
Confidence 9999986321 136999999999999999999999999999999999998 999999999999999999999986 9999
Q ss_pred HHHHHHHHHhhcCCc
Q 013681 368 ATGFALHLAAGLGCI 382 (438)
Q Consensus 368 g~~a~~hla~al~~~ 382 (438)
+.+|++|++++++..
T Consensus 363 ~~aa~~Hlaaa~~~~ 377 (408)
T TIGR01502 363 SAEVTTHVGMATGAR 377 (408)
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999987753
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=392.04 Aligned_cols=288 Identities=18% Similarity=0.234 Sum_probs=233.8
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCCC---Cch-H----HHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHHC-CCCh-hh
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPLV---TGD-Q----TKALVKVR-EACQFLRQSPPTTLNFALDEIARIL-PGSE-FA 161 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~~---s~~-~----~~~~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~~-~g~~-~~ 161 (438)
.+.++|||+|++|++||||+.+. .+ +++ . ......++ .+.|.|+|+++.+++.+|+.|++.. .++. ..
T Consensus 12 ~~~vlV~I~tddG~~G~GEa~~~-~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~~~ 90 (369)
T cd03314 12 GEAISVMLVLEDGQVAVGDCAAV-QYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRLHT 90 (369)
T ss_pred CcEEEEEEEECCCCEEEEecccc-cccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcchh
Confidence 46899999999999999999753 22 122 1 11222333 4789999999999999999997753 2332 24
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHhC-----CC-CCceeeeeeeCCC---CHHHHHHHHHHHhhc---------CCcEE
Q 013681 162 SVRAGVEMALIDAVANSIDIPLWRLFG-----GA-SNSLSTAITIPAV---SPAEASELASKYCKL---------GFSTL 223 (438)
Q Consensus 162 sa~~aie~AL~Dl~gk~~g~Pl~~Llg-----g~-~~~ip~~~~i~~~---~~~~~~~~~~~~~~~---------Gf~~i 223 (438)
++++|||+||||++||.+|+|||+||| |. ++++|+|.+++.. ..+++.+++++++++ ||+.+
T Consensus 91 aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kG~~~~ 170 (369)
T cd03314 91 AIRYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINNVEEKGPKGE 170 (369)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhhHhhcCccHH
Confidence 578999999999999999999999999 43 6899999876542 356666666555533 55555
Q ss_pred EEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCC----C--CHHHHHHHHHHhhhC-C-CCCceEecCCCCCC----hhh
Q 013681 224 KLNVGRNITADFDVLQAIHAVHPHCSFILDANEG----Y--TSEEAVEVLGKLNDM-G-VIPVLFEQPVHRDD----WSG 291 (438)
Q Consensus 224 KlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~----~--s~~~A~~~l~~L~~~-~-l~~~~iEqPl~~~d----~~~ 291 (438)
|+|+ +.++|.++++++|+.++++.|+||+|++ | ++++|+++++.|+++ + + +.|||||++++| +++
T Consensus 171 K~~~--~~~~~~~~v~avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-~~~iEqP~~~~d~~~~~~~ 247 (369)
T cd03314 171 KLLE--YVKWLSDRIRKLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-PLRIEGPMDAGSREAQIER 247 (369)
T ss_pred HHHH--hHHHHHHHHHHHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-cEEEecCCCCCcchhhHHH
Confidence 5554 3567889999999668999999999987 6 999999999999976 2 2 359999999855 899
Q ss_pred HHHHHHhhc-cccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHH
Q 013681 292 LHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLA 368 (438)
Q Consensus 292 ~a~L~~~~r-~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig 368 (438)
|++|++..+ +.+++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +||+|+
T Consensus 248 ~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~ 327 (369)
T cd03314 248 MAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDIS 327 (369)
T ss_pred HHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHH
Confidence 999986210 125899999999999999999999999999999999998 99999999999999999999987 499999
Q ss_pred HHHHHHHHhhcCCcce
Q 013681 369 TGFALHLAAGLGCIKY 384 (438)
Q Consensus 369 ~~a~~hla~al~~~~~ 384 (438)
.+|++|+++++++...
T Consensus 328 ~aa~lHlaaa~~~~~~ 343 (369)
T cd03314 328 ARVTVHVALATRADQM 343 (369)
T ss_pred HHHHHHHHHhcCCcce
Confidence 9999999999887643
|
This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=452.93 Aligned_cols=316 Identities=25% Similarity=0.311 Sum_probs=259.5
Q ss_pred ecccccccccccccCCcceeeEEEEEEEEEEeeccCCcccCCee--EeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHH
Q 013681 46 VRTSERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSS--VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT 123 (438)
Q Consensus 46 ~~~~~~ts~~~~~~~~~~~~~I~~i~~~~~~~pl~~p~~~s~~~--~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~ 123 (438)
+..+..-+.|++. |||++++++++++|++.||.++.++ ...++.++|+|++++|.+|||||+|++.++.+..
T Consensus 918 ~~~~~~~~~~~~~------~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~~~et~~ 991 (1655)
T PLN02980 918 SSCLHSIIDGVFL------CKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEIHEEDLL 991 (1655)
T ss_pred CCccccccccccc------ceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCCCccccc
Confidence 3445555666555 9999999999999999999999875 3468999999999999999999999865432211
Q ss_pred HHHHHH------------HHHhhHhcCCCCCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCC
Q 013681 124 KALVKV------------REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS 191 (438)
Q Consensus 124 ~~~~~~------------~~i~~~l~g~~~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~ 191 (438)
+....+ ..+.|.|.|.++ +.+|+.+.. ..+..++++++||||||||++||..|+|+|+||||.+
T Consensus 992 ~~~~~l~~~~~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~-~~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg~~ 1067 (1655)
T PLN02980 992 DVEEQLRFLLHVIKGAKISFMLPLLKGSFS---SWIWSELGI-PPSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQ 1067 (1655)
T ss_pred cHHHHHHHHHHHHhhhhhhhhhHhhcCcch---HHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCC
Confidence 111111 123567777743 333444421 1122468999999999999999999999999998742
Q ss_pred ---------Cceeeeeee-CCCCHHHHHHHHHHHhhcCCcEEEEecCC--CchHHHHHHHHHHh-hCCCcEEEEeCCCCC
Q 013681 192 ---------NSLSTAITI-PAVSPAEASELASKYCKLGFSTLKLNVGR--NITADFDVLQAIHA-VHPHCSFILDANEGY 258 (438)
Q Consensus 192 ---------~~ip~~~~i-~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~--d~~~di~~l~aiR~-~~~~~~L~vDAN~~~ 258 (438)
.++|+|..+ +..+++++.+++++++++||+++|+|+|. ++++|++++++||+ .+++++||+|||++|
T Consensus 1068 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~w 1147 (1655)
T PLN02980 1068 KDENGSEQSHSVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNW 1147 (1655)
T ss_pred CCcceeccccceeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCC
Confidence 346666665 45689999999999999999999999995 68999999999999 578999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHH-----HHHHHHcCCccEEEe
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLND-----VQKVMQENLASVVNI 333 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d-----~~~ll~~~a~d~i~l 333 (438)
++++|++++++|+++++ .|||||++ +++++++|++ ++++|||+||++.+..+ ++++++.+ ++++++
T Consensus 1148 s~~~A~~~~~~L~~~~i--~~iEqPl~--~~~~l~~l~~----~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~-~~~i~i 1218 (1655)
T PLN02980 1148 TYEEAIEFGSLVKSCNL--KYIEEPVQ--DEDDLIKFCE----ETGLPVALDETIDKFEECPLRMLTKYTHPG-IVAVVI 1218 (1655)
T ss_pred CHHHHHHHHHHHhhcCC--CEEECCCC--CHHHHHHHHH----hCCCCEEeCCCcCCcccchHHHHHHHHHCC-CeEEEe
Confidence 99999999999999987 49999997 4788999886 68999999999998754 56777665 558899
Q ss_pred cCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcC
Q 013681 334 KLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380 (438)
Q Consensus 334 k~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~ 380 (438)
|++++| ++++++++++|+++|+++++||++||+||++|++|+++.++
T Consensus 1219 K~~~~GGit~~~~ia~~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~ 1266 (1655)
T PLN02980 1219 KPSVVGGFENAALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLE 1266 (1655)
T ss_pred ChhhhCCHHHHHHHHHHHHHcCCeEEecCcccCHHHHHHHHHHHHhch
Confidence 999998 99999999999999999999999999999999999998873
|
|
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=365.49 Aligned_cols=225 Identities=27% Similarity=0.504 Sum_probs=211.3
Q ss_pred EEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHH
Q 013681 70 AEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALD 149 (438)
Q Consensus 70 i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~ 149 (438)
++++.+++|++.||.++.++.+.++.++|+|+|++|++||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~~~~~~~iv~l~~~~G~~G~Ge~------------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGEV------------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceEeeceeEEEEEEECCCCcchhhH-------------------------------------
Confidence 4678899999999999999999999999999999999999998
Q ss_pred HHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecC
Q 013681 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG 228 (438)
Q Consensus 150 ~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG 228 (438)
++||||||||+.||..|+|||+||||. ++++|+|.+
T Consensus 44 --------------~~aid~Al~Dl~gk~~~~pl~~llgg~~~~~v~~~~~----------------------------- 80 (229)
T cd00308 44 --------------ISGIDMALWDLAAKALGVPLAELLGGGSRDRVPAYGS----------------------------- 80 (229)
T ss_pred --------------HHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeccHH-----------------------------
Confidence 689999999999999999999999996 788998865
Q ss_pred CCchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeE
Q 013681 229 RNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (438)
Q Consensus 229 ~d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPI 307 (438)
+++++++|+. ++++.|++|||++|++++|++++++|+++++ .|||||++++|++++++|++ ++++||
T Consensus 81 ------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~pI 148 (229)
T cd00308 81 ------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGL--AWIEEPCAPDDLEGYAALRR----RTGIPI 148 (229)
T ss_pred ------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--CeEECCCCccCHHHHHHHHh----hCCCCE
Confidence 7889999994 6899999999999999999999999999987 59999999999999999986 689999
Q ss_pred EEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 308 VADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 308 a~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+++.++++|++++++|..+.|
T Consensus 149 a~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~~~~e 228 (229)
T cd00308 149 AADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPNDRAIE 228 (229)
T ss_pred EeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCCCchhhc
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999866543
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=348.47 Aligned_cols=287 Identities=23% Similarity=0.318 Sum_probs=237.1
Q ss_pred EEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHHH
Q 013681 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDE 150 (438)
Q Consensus 71 ~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~~ 150 (438)
+.+.|++||+ .....++.|+.++++ |-.||||.+|++.|+.+. + ..++
T Consensus 13 ~~~~~~~p~~----~~~~~~~~r~~~~~~-----~~~~w~e~~p~~~~~~~~--~---~~~~------------------ 60 (327)
T PRK02901 13 RAHVVALPMR----VRFRGITVREAVLIE-----GPAGWGEFSPFLEYDPAE--A---AAWL------------------ 60 (327)
T ss_pred cCeEEecccc----cccCCcceeEEEEEe-----cCCceEEecCCCCCCHHH--H---HHHH------------------
Confidence 3456778887 444567889999997 889999999998887631 1 1111
Q ss_pred HHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-
Q 013681 151 IARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR- 229 (438)
Q Consensus 151 l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~- 229 (438)
.+++|.|-. +-| ...++++|+|.+++..+++++.+.++++ .||+++|+|+|.
T Consensus 61 -------------~~~~~~~~~-------~~~-----~~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~~~~KvKVg~~ 113 (327)
T PRK02901 61 -------------ASAIEAAYG-------GPP-----PPVRDRVPVNATVPAVDAAQVPEVLARF--PGCRTAKVKVAEP 113 (327)
T ss_pred -------------HHHHHhhhc-------cCC-----cccCCeEEeeEEeCCCCHHHHHHHHHHh--CCCCEEEEEECCC
Confidence 223333210 001 1336789999998888888877666654 799999999974
Q ss_pred --CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhccccCC
Q 013681 230 --NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305 (438)
Q Consensus 230 --d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~i 305 (438)
++++|++++++||+ .||++.|++|||++||+++|+++++.| +++++ .|||||++. +++|++|++ ++++
T Consensus 114 ~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l--~~iEqP~~~--~~~la~Lr~----~~~v 185 (327)
T PRK02901 114 GQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPL--EYVEQPCAT--VEELAELRR----RVGV 185 (327)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCc--eEEecCCCC--HHHHHHHHH----hCCC
Confidence 68999999999999 579999999999999999999999999 77887 599999974 899999986 6899
Q ss_pred eEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcce
Q 013681 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY 384 (438)
Q Consensus 306 PIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~ 384 (438)
|||+||++.+..++.++++.+++|++|+|++++| ++++++ +|+++|+++++||++||+||++|++|+++++++..+
T Consensus 186 PIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp~~~~ 262 (327)
T PRK02901 186 PIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSSALDTSVGIAAGLALAAALPELDH 262 (327)
T ss_pred CEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999999998 998877 679999999999999999999999999999998665
Q ss_pred -eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 385 -VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 385 -~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
.++++..++..|+ .+++.++||++.+|+ +++|++.+++|.++.
T Consensus 263 ~~gl~t~~~~~~dl-~~~l~~~dG~i~vp~-----v~~d~~~l~~~~~~~ 306 (327)
T PRK02901 263 ACGLATGGLFEEDV-ADPLLPVDGFLPVRR-----VTPDPARLAALAADP 306 (327)
T ss_pred ccccCchhhhhhcc-CCCceeeCCEEeCCC-----CCCCHHHHHhccCCH
Confidence 4666544455666 667889999999998 899999999998764
|
|
| >PRK00077 eno enolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=319.19 Aligned_cols=297 Identities=23% Similarity=0.292 Sum_probs=226.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC-----------CC-----CCc-hHHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV-----------PL-----VTG-DQTKALV 127 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~-----------~~-----~s~-~~~~~~~ 127 (438)
++|++|..+.+- .|. .++.|.|+|+|++|.+|+|++... +. |.+ ....++.
T Consensus 2 ~~I~~v~~r~i~--------dsr----g~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~ 69 (425)
T PRK00077 2 SKIEDIIAREIL--------DSR----GNPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVE 69 (425)
T ss_pred CeEEEEEEEEEE--------cCC----CCeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHH
Confidence 478888887642 222 267799999999999999997532 00 222 1123334
Q ss_pred HHH-HHhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CC--ceeeeee
Q 013681 128 KVR-EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SN--SLSTAIT 199 (438)
Q Consensus 128 ~~~-~i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~--~ip~~~~ 199 (438)
.++ .+.|.|+|+++.+++.+|+.|.+.- .+....++++|||+|+||+.||..|+|||+||||. ++ ++|.|..
T Consensus 70 ~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~~~~pvp~~n~ 149 (425)
T PRK00077 70 NVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNAKVLPVPMMNI 149 (425)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCcccccceeEEE
Confidence 444 4899999999999999999997631 11122478999999999999999999999999995 33 4555443
Q ss_pred eCC----CC---HHH-H--------HHHHHHHhhcCCcEEEE---------ecC------CCchHHHHHHHHHHhh----
Q 013681 200 IPA----VS---PAE-A--------SELASKYCKLGFSTLKL---------NVG------RNITADFDVLQAIHAV---- 244 (438)
Q Consensus 200 i~~----~~---~~~-~--------~~~~~~~~~~Gf~~iKl---------KvG------~d~~~di~~l~aiR~~---- 244 (438)
++. .. ..+ | .+++.++..++|+.+|. ++| ++++.|.++|+.+|++
T Consensus 150 i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 150 INGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred EcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 321 11 111 1 13344445667888886 356 3568899999999984
Q ss_pred ----CCCcEEEEeC-------CCC-------CCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhcccc--
Q 013681 245 ----HPHCSFILDA-------NEG-------YTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-- 303 (438)
Q Consensus 245 ----~~~~~L~vDA-------N~~-------~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~-- 303 (438)
|+++.|+||+ |+. |+++++++++.++ ++|++ .|||||++++|++++++|++ ++
T Consensus 230 g~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i--~~iEdPl~~~D~~g~~~L~~----~~~~ 303 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPI--VSIEDGLDENDWEGWKLLTE----KLGD 303 (425)
T ss_pred cCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCc--EEEEcCCCCccHHHHHHHHH----hcCC
Confidence 6899999999 343 5778888776665 56886 59999999999999999986 45
Q ss_pred CCeEEEcCC-CCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEE-ccCCchhHHHHHHHHHHhhc
Q 013681 304 GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI-DGMIETRLATGFALHLAAGL 379 (438)
Q Consensus 304 ~iPIa~dEs-l~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~-~s~~es~ig~~a~~hla~al 379 (438)
.+||++||. ..++.+++++++.+++|++++|++++| ++++++++++|+++|+.+++ |++.|++.+..|.+|++.+.
T Consensus 304 ~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~ 382 (425)
T PRK00077 304 KVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNA 382 (425)
T ss_pred CCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCC
Confidence 699999997 467999999999999999999999998 99999999999999998776 88889999877777776554
|
|
| >cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=313.14 Aligned_cols=281 Identities=25% Similarity=0.331 Sum_probs=219.8
Q ss_pred eeEEEEEEEEcCCcEEEEEEecC--C--------------CCCch-HHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVV--P--------------LVTGD-QTKALVKVR-EACQFLRQSPPTTLNFALDEIARI 154 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~--~--------------~~s~~-~~~~~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~ 154 (438)
++.|.|+|+|++|.+|+|+++.. . .|+++ ....+..++ .+.|.|+|+++.+++.+++.|.+.
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~~l~~~ 92 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDKLLIEL 92 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 57799999999999999998652 1 13332 223444454 488999999999999999998753
Q ss_pred C----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCC-Cceeeee--eeCC-----C--C-------H--HHHHHH
Q 013681 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NSLSTAI--TIPA-----V--S-------P--AEASEL 211 (438)
Q Consensus 155 ~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~-~~ip~~~--~i~~-----~--~-------~--~~~~~~ 211 (438)
. .+....++++|||||+||+.||..|+|||++|||.. .++|++. .++. + + | ..+.++
T Consensus 93 dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~~~lpvp~~nvi~GG~ha~~~~~iqe~~i~p~~~~~~~e 172 (408)
T cd03313 93 DGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSE 172 (408)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCCcccceeeEEEecCcccccCccccccccccccCccCHHH
Confidence 1 122235789999999999999999999999999964 4555442 1211 0 1 1 222355
Q ss_pred HHHHhhcCCcEEE-----------EecC------CCchHHHHHHHHHHh-h-------CCCcEEEEeC------------
Q 013681 212 ASKYCKLGFSTLK-----------LNVG------RNITADFDVLQAIHA-V-------HPHCSFILDA------------ 254 (438)
Q Consensus 212 ~~~~~~~Gf~~iK-----------lKvG------~d~~~di~~l~aiR~-~-------~~~~~L~vDA------------ 254 (438)
+.++..+||+.+| +++| ++++.|.++|+.+|+ + |+++.|++|+
T Consensus 173 a~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~ 252 (408)
T cd03313 173 ALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYV 252 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcce
Confidence 6667788899988 3344 356889999988887 4 5689999999
Q ss_pred -----CCCCCHHHHHHHHHHhh-hCCCCCceEecCCCCCChhhHHHHHHhhcccc--CCeEEEcCC-CCCHHHHHHHHHc
Q 013681 255 -----NEGYTSEEAVEVLGKLN-DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY--GISVVADES-CRSLNDVQKVMQE 325 (438)
Q Consensus 255 -----N~~~s~~~A~~~l~~L~-~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~--~iPIa~dEs-l~~~~d~~~ll~~ 325 (438)
|+.|++++|+++++.|. +|++ .|||||++++|++++++|++ ++ ++||++||. +.++.+++++++.
T Consensus 253 ~~~~~~~~~t~~eai~~~~~l~e~~~i--~~iEdPl~~~D~eg~~~L~~----~~g~~ipi~gdE~~~~~~~~~~~~i~~ 326 (408)
T cd03313 253 YDSDEGKKLTSEELIDYYKELVKKYPI--VSIEDPFDEDDWEGWAKLTA----KLGDKIQIVGDDLFVTNPERLKKGIEK 326 (408)
T ss_pred eccCCCcccCHHHHHHHHHHHHHhCCc--EEEEeCCCCcCHHHHHHHHH----hcCCCCeEEcCCcccCCHHHHHHHHHh
Confidence 45588899999999874 6886 59999999999999999986 44 899999995 5789999999999
Q ss_pred CCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEE-ccCCchhHHHHHHHHHHhhcCC
Q 013681 326 NLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI-DGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 326 ~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~-~s~~es~ig~~a~~hla~al~~ 381 (438)
+++|++++|++++| ++++++++++|+++|+++++ |++.|+..... +|++.+++.
T Consensus 327 ~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~--adlava~~~ 382 (408)
T cd03313 327 KAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFI--ADLAVALGA 382 (408)
T ss_pred CCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHH--HHHHHHhCc
Confidence 99999999999998 99999999999999999988 77778877644 466555544
|
The reaction is facilitated by the presence of metal ions. |
| >TIGR01060 eno phosphopyruvate hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=308.99 Aligned_cols=283 Identities=23% Similarity=0.293 Sum_probs=215.5
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCC----------------CCc-hHHHHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVKVR-EACQFLRQSPPTTLNFALDEIARI 154 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~ 154 (438)
.++|.|+|+|++|.+|+++++.... |.+ ....++..++ .+.|.|+|+++.+++.+|+.|.+.
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l~~~ 94 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIMIEL 94 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 5679999999999999999864211 111 1123334454 478999999999999999999762
Q ss_pred --CCC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeee--C--C--C---CHHHH---------HHH
Q 013681 155 --LPG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI--P--A--V---SPAEA---------SEL 211 (438)
Q Consensus 155 --~~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i--~--~--~---~~~~~---------~~~ 211 (438)
.++ ....++++|||||+||+.||..|+|||+||||. ++++|++... . . . +.++. .++
T Consensus 95 d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~~~~lPvp~~n~i~GG~~a~~~~~~qe~~i~p~~a~~~~e 174 (425)
T TIGR01060 95 DGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFRE 174 (425)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCceeeEEEEeecccccccCccCHHHHhccccchHHHHH
Confidence 111 122468999999999999999999999999996 5677776442 1 1 1 33432 122
Q ss_pred HHHHhhcCCcEEE--Ee-------cC------CCch---HHHHHH-HHHHh----hCCCcEEEEeCCC------------
Q 013681 212 ASKYCKLGFSTLK--LN-------VG------RNIT---ADFDVL-QAIHA----VHPHCSFILDANE------------ 256 (438)
Q Consensus 212 ~~~~~~~Gf~~iK--lK-------vG------~d~~---~di~~l-~aiR~----~~~~~~L~vDAN~------------ 256 (438)
+.++..+||+.+| +| +| ++++ +.++++ +++++ .|+++.|++|+|.
T Consensus 175 ~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~ 254 (425)
T TIGR01060 175 ALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYV 254 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceee
Confidence 3333347899999 44 45 2332 334433 44444 3678999999973
Q ss_pred ------CCCHHHHHHHHHH-hhhCCCCCceEecCCCCCChhhHHHHHHhhcccc--CCeEEEcCCCC-CHHHHHHHHHcC
Q 013681 257 ------GYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY--GISVVADESCR-SLNDVQKVMQEN 326 (438)
Q Consensus 257 ------~~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~--~iPIa~dEsl~-~~~d~~~ll~~~ 326 (438)
.||.++|+++++. +++|++ .|||||++++|+++|++|++ ++ ++||++||+.. ++.+++++++.+
T Consensus 255 ~~~~~~~~s~~eai~~~~~lle~~~i--~~iEdPl~~~D~~~~~~L~~----~~~~~ipI~gDE~~~t~~~~~~~~i~~~ 328 (425)
T TIGR01060 255 YKGENKQLTSEEMIEYYKELVEKYPI--VSIEDGLSEEDWEGWAELTK----ELGDKVQIVGDDLFVTNTEILREGIEMG 328 (425)
T ss_pred ecCcccccCHHHHHHHHHHHHhcCCc--EEEEcCCCcccHHHHHHHHH----hcCCCCeEEeCCCcccCHHHHHHHHHhC
Confidence 2467799999995 678886 59999999999999999986 56 79999999754 699999999999
Q ss_pred CccEEEecCCcch-HHHHHHHHHHHHHcCCeEE-EccCCchhHHHHHHHHHHhhcCC
Q 013681 327 LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLM-IDGMIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 327 a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~-~~s~~es~ig~~a~~hla~al~~ 381 (438)
++|++++|++++| ++++++++++|+++|++++ .|++.|++++..|.+|++.+.+.
T Consensus 329 a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~ 385 (425)
T TIGR01060 329 VANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQ 385 (425)
T ss_pred CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCc
Confidence 9999999999998 9999999999999999955 57778999999888888776543
|
Alternate name: enolase |
| >PLN00191 enolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-30 Score=265.20 Aligned_cols=297 Identities=21% Similarity=0.265 Sum_probs=224.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCc----------EEEEEEecCCC----CCc-hHHHHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGC----------VGWGEVAVVPL----VTG-DQTKALVKV 129 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~----------~G~GE~~~~~~----~s~-~~~~~~~~~ 129 (438)
++|++|..+.+- .|.| +++|.|+|+|++|. +|++|+..++. |.+ ....++..+
T Consensus 26 ~~I~~v~~r~il--------dsrG----~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v 93 (457)
T PLN00191 26 ATITKVKARQII--------DSRG----NPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNV 93 (457)
T ss_pred CeeeEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHH
Confidence 579999887642 2222 67799999999997 78888865532 323 233445445
Q ss_pred HH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHh---CCC-CCceeeeee-
Q 013681 130 RE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLF---GGA-SNSLSTAIT- 199 (438)
Q Consensus 130 ~~-i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Ll---gg~-~~~ip~~~~- 199 (438)
++ +.|.|+|.++.+++.+++.|...- .+....++..|+++|+|++.|+..|+|||++| ||. ...+|++..
T Consensus 94 ~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~n 173 (457)
T PLN00191 94 NEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFN 173 (457)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEE
Confidence 44 899999999999999988887532 12234678999999999999999999999999 664 456776541
Q ss_pred ---e----------------C--CCCHHHHHHH-------HHHHhhc--CCcEEEEecC------CCchHHHHHHHHHHh
Q 013681 200 ---I----------------P--AVSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNITADFDVLQAIHA 243 (438)
Q Consensus 200 ---i----------------~--~~~~~~~~~~-------~~~~~~~--Gf~~iKlKvG------~d~~~di~~l~aiR~ 243 (438)
. | ..+..+..+. +.+.++. |... ..+| ++++.+.+.|+.+++
T Consensus 174 iinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGg~ap~~~~~~eal~ll~e 251 (457)
T PLN00191 174 VINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDA--CNVGDEGGFAPNIQDNKEGLELLKE 251 (457)
T ss_pred eecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--CccCCCCCcCCCCCCHHHHHHHHHH
Confidence 1 1 1133332221 1222221 3321 1243 246666777766666
Q ss_pred ----hC--CCcEEEEeCCCC--------C---------------CHHHHHHHHHHhhh-CCCCCceEecCCCCCChhhHH
Q 013681 244 ----VH--PHCSFILDANEG--------Y---------------TSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLH 293 (438)
Q Consensus 244 ----~~--~~~~L~vDAN~~--------~---------------s~~~A~~~l~~L~~-~~l~~~~iEqPl~~~d~~~~a 293 (438)
++ +++.|.+|+..+ | |.++++++++.|.+ |++ .|||||++.+||++++
T Consensus 252 Ai~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I--~~IEDPl~~~D~eg~~ 329 (457)
T PLN00191 252 AIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPI--VSIEDPFDQDDWEHWA 329 (457)
T ss_pred HHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCc--EEEECCCCcccHHHHH
Confidence 23 479999998432 3 88999999999765 886 5999999999999999
Q ss_pred HHHHhhccccCCeEEEcCCC-CCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEcc-CCchhHHHH
Q 013681 294 DVSNFARDTYGISVVADESC-RSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATG 370 (438)
Q Consensus 294 ~L~~~~r~~~~iPIa~dEsl-~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s-~~es~ig~~ 370 (438)
+|++ ++.+||++||++ .++.+++++++.+++|++++|++++| ++++++++++|+++|+++|+++ +.||+++..
T Consensus 330 ~Lt~----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~ 405 (457)
T PLN00191 330 KLTS----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFI 405 (457)
T ss_pred HHHc----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHH
Confidence 9986 588999999986 88999999999999999999999998 9999999999999999999965 899999999
Q ss_pred HHHHHHhhcCC
Q 013681 371 FALHLAAGLGC 381 (438)
Q Consensus 371 a~~hla~al~~ 381 (438)
|.+|++++.+.
T Consensus 406 Adlava~~~~~ 416 (457)
T PLN00191 406 ADLAVGLATGQ 416 (457)
T ss_pred HHHHHHhCCCc
Confidence 99999987754
|
|
| >PTZ00081 enolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-28 Score=246.40 Aligned_cols=296 Identities=23% Similarity=0.294 Sum_probs=214.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCc----------EEEEEEecCCC-----CCc-hHHHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGC----------VGWGEVAVVPL-----VTG-DQTKALVK 128 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~----------~G~GE~~~~~~-----~s~-~~~~~~~~ 128 (438)
|+|++|..+.+- .|.+ +++|.|+|+|++|. +|++|+..++. |.+ ....++..
T Consensus 2 ~~I~~v~~r~i~--------dSrg----~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~~ 69 (439)
T PTZ00081 2 STIKSIKAREIL--------DSRG----NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEN 69 (439)
T ss_pred cEEEEEEEEEEe--------cCCC----CceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHHH
Confidence 689999887642 2222 56799999999998 99999866543 222 23344444
Q ss_pred HHH-HhhHhcCCCCCCHHHHHHHHHHHCCC----------ChhhHHHHHHHHHHHHHHHHHCCCCHHHHh---CCC---C
Q 013681 129 VRE-ACQFLRQSPPTTLNFALDEIARILPG----------SEFASVRAGVEMALIDAVANSIDIPLWRLF---GGA---S 191 (438)
Q Consensus 129 ~~~-i~~~l~g~~~~~~~~~~~~l~~~~~g----------~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Ll---gg~---~ 191 (438)
+++ +.|.|+|.++.+++.+++.|.+.+.| ....++..|+++|+|++.|+..|+|||++| ||. .
T Consensus 70 v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~~ 149 (439)
T PTZ00081 70 VNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTDK 149 (439)
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccCC
Confidence 544 79999999999999999988773222 223678999999999999999999999999 553 1
Q ss_pred Cce--eeeeeeC--------------------CCCHHHHHHH-------HHHHhhc--CCcEEEEecC------CCchHH
Q 013681 192 NSL--STAITIP--------------------AVSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNITAD 234 (438)
Q Consensus 192 ~~i--p~~~~i~--------------------~~~~~~~~~~-------~~~~~~~--Gf~~iKlKvG------~d~~~d 234 (438)
..+ |.+..+. ..+..+..+. ..+.++. |... ..+| ++++.+
T Consensus 150 ~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGgfap~~~~~ 227 (439)
T PTZ00081 150 FVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGDEGGFAPNIKDP 227 (439)
T ss_pred ccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccccCCCcCCCCCCH
Confidence 233 4433211 1133332221 1222221 4321 1233 244445
Q ss_pred HHHHHHHHh----hC--CCcEEEEeCCC------------------------CCCHHHHHHHH-HHhhhCCCCCceEecC
Q 013681 235 FDVLQAIHA----VH--PHCSFILDANE------------------------GYTSEEAVEVL-GKLNDMGVIPVLFEQP 283 (438)
Q Consensus 235 i~~l~aiR~----~~--~~~~L~vDAN~------------------------~~s~~~A~~~l-~~L~~~~l~~~~iEqP 283 (438)
.+.|+.+++ ++ +++.|.+|+.. .+|.+|.++++ +.+++|++ .|||||
T Consensus 228 eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I--~~IEDP 305 (439)
T PTZ00081 228 EEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI--VSIEDP 305 (439)
T ss_pred HHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCc--EEEEcC
Confidence 555555544 43 46888888732 36777878766 66789986 599999
Q ss_pred CCCCChhhHHHHHHhhcccc--CCeEEEcCC-CCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEE
Q 013681 284 VHRDDWSGLHDVSNFARDTY--GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 284 l~~~d~~~~a~L~~~~r~~~--~iPIa~dEs-l~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~ 359 (438)
++.+||+++++|++ ++ ++||++||. ..++.+++++++.++++++++|++++| ++++++++++|+++|+.+++
T Consensus 306 l~~~D~eg~~~Lt~----~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 306 FDQDDWEAYAKLTA----AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CCcccHHHHHHHHH----hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999987 46 799999997 577999999999999999999999998 99999999999999999999
Q ss_pred ccCC-chhHHHHHHHHHHhhcCCc
Q 013681 360 DGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 360 ~s~~-es~ig~~a~~hla~al~~~ 382 (438)
++.. |+. ..+++|||.++++.
T Consensus 382 shrsgETe--d~~iadLAVa~~~~ 403 (439)
T PTZ00081 382 SHRSGETE--DTFIADLVVGLGTG 403 (439)
T ss_pred eCCCchhH--HHHHHHHHHHcCCC
Confidence 6654 554 57888999998765
|
|
| >COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=225.95 Aligned_cols=275 Identities=20% Similarity=0.220 Sum_probs=216.6
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHH--HHHHHHHhhHhcCCCCCCHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA--LVKVREACQFLRQSPPTTLNF 146 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~--~~~~~~i~~~l~g~~~~~~~~ 146 (438)
+..+|.+.+|+.......+..+..|++++|++.. ++..||||.+|+|++|.++.+. ...+.++-..+.|..+.+
T Consensus 3 sa~lYry~iPmdsgviLR~r~Lk~RdGl~V~l~~-~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~~~d--- 78 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRRLKTRDGLYVCLRE-GEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHDPLD--- 78 (321)
T ss_pred ccceEEEecccccceeeehhhhcccccEEEEEee-CCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 4578999999999988888899999999999985 6799999999999999865332 222344455555654432
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEe
Q 013681 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226 (438)
Q Consensus 147 ~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlK 226 (438)
..+||+.||+.+|+..+++-... .+....-| +..+||+++......+ .|-+.-|+|
T Consensus 79 -----------~~~PSVAFGlScA~aEl~~~Lp~-------~~nY~~AP----LC~GDPDeL~~~L~~m--pGeKvAKvK 134 (321)
T COG1441 79 -----------PQMPSVAFGLSCALAELKGTLPE-------AANYRVAP----LCTGDPDELYLKLADM--PGEKVAKVK 134 (321)
T ss_pred -----------ccCchhHHHHHHHHHHHhhhchh-------hcCccccc----CcCCCHHHHHHHHhcC--Ccceeeeee
Confidence 34689999999999999874421 12222222 3357999997666654 799999999
Q ss_pred cCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh-CCCCCceEecCCCCCChhhHHHHHHhhccccC
Q 013681 227 VGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (438)
Q Consensus 227 vG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~-~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~ 304 (438)
||. ..-+|--.+..+-+..||..||+|||.+|++..|..|++...+ +.-+|.|+||||+.. ++-++++. .++
T Consensus 135 VGlYEa~RDGmivnllLEaiPDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~--aeSr~Fa~----eTg 208 (321)
T COG1441 135 VGLYEAVRDGMIVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTR--AESRAFAR----ETG 208 (321)
T ss_pred eeeeeccccchHHHHHHHhCccceeeecccccCChHHHHHHHHhcCHHHHHHHHHHhcccCCh--HHHHHHHH----hcC
Confidence 995 4456667778888889999999999999999999999999874 333467999999864 34456664 699
Q ss_pred CeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhc
Q 013681 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (438)
Q Consensus 305 iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al 379 (438)
|.||+||++.. .||.- -....+..|+|||+.+| +..+.+.++.|++.|+..+++|.+||++|+...+.+|+-+
T Consensus 209 IAIAWDEs~re-adF~~-e~e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSSiESSLGLtQLARiA~~l 282 (321)
T COG1441 209 IAIAWDESLRE-ADFAF-EAEPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSSIESSLGLTQLARIAAWL 282 (321)
T ss_pred eeEeecchhcc-ccccc-ccCCCceEEEecccchhhHHHHHHHHHHHHhcCceeEeechhhhhcCHHHHHHHHHHh
Confidence 99999999886 44422 22346889999999999 9999999999999999999999999999999999998764
|
|
| >PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=164.16 Aligned_cols=115 Identities=26% Similarity=0.471 Sum_probs=99.0
Q ss_pred EEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCCCHHH
Q 013681 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTTLNF 146 (438)
Q Consensus 68 ~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~~~~~ 146 (438)
.+++++.+++|++ ||++|.++.+.++.++|+|+|++|++||||+.+.+. +.+ .....+.+ +.|.+.|+++.+++.
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~~-~~~--~~~~~~~~~l~~~l~g~~~~~~~~ 77 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSPG-TAE--TVASALEDYLAPLLIGQDPDDIED 77 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSSS-SHH--HHHHHHHHTHHHHHTTSBTTGHHH
T ss_pred EEEEEEEeccCcC-CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCcc-hhH--HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4678888999999 999999999999999999999999999999998764 222 12223344 789999999999999
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC
Q 013681 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188 (438)
Q Consensus 147 ~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg 188 (438)
+++.+++...+ .+++++|||+||||++||..|+|||+|||
T Consensus 78 ~~~~~~~~~~~--~~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 78 IWQELYRLIKG--NPAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHTSS--HHHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHhccc--hHHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 99999877655 47899999999999999999999999998
|
1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A .... |
| >PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=159.75 Aligned_cols=106 Identities=24% Similarity=0.366 Sum_probs=95.6
Q ss_pred cCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecC
Q 013681 310 DESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN 388 (438)
Q Consensus 310 dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~ 388 (438)
||++.++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+|+++|++|+++++++..++|+
T Consensus 1 gE~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~~~e~- 78 (111)
T PF13378_consen 1 GESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCDWLEY- 78 (111)
T ss_dssp STTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBSEEEE-
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCCcccc-
Confidence 799999999999999999999999999997 99999999999999999999999 999999999999999999888887
Q ss_pred CCcccccCCCC---CceeeeCcEEecCC-CCCccce
Q 013681 389 TPFLLSEDPFV---GGCEVSGAIYNFTN-ARGQGGF 420 (438)
Q Consensus 389 ~pl~~~~~~~~---~~~~~~~G~~~~p~-~pGlGv~ 420 (438)
|++. ++++. +++. +||++.+|+ +||||+|
T Consensus 79 -~~~~-~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 79 -PYFE-EDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp -GGGT-HHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred -cchh-hhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 5433 44544 3456 999999999 9999997
|
... |
| >COG0148 Eno Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-17 Score=160.37 Aligned_cols=283 Identities=25% Similarity=0.315 Sum_probs=195.8
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCCCCc-----------------hHHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPLVTG-----------------DQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARI 154 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~~s~-----------------~~~~~~~~~~~-i~~~l~g~~~~~~~~~~~~l~~~ 154 (438)
.++|-|+|.+++|..|++-++. ..-++ ....++..+++ +.|.|+|.+..++..+.+.|...
T Consensus 18 npTVEveV~~~~g~~g~a~vPS-GAStG~~EavElrdgd~ry~gkGV~~AV~nVn~~Iap~LiG~da~dQ~~ID~~liel 96 (423)
T COG0148 18 NPTVEVEVTLEDGFGGRAAVPS-GASTGEHEAVELRDGDSRYLGKGVLKAVANVNEIIAPALIGLDATDQALIDSLLIEL 96 (423)
T ss_pred CceEEEEEEEcCCCcceeecCC-CCCCCCceeEEecCCccccccccHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHc
Confidence 5789999999999988874432 11121 11124444544 78999999999988877776543
Q ss_pred C----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCC-Cceeee--eeeC------------------C--CCHHH
Q 013681 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NSLSTA--ITIP------------------A--VSPAE 207 (438)
Q Consensus 155 ~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~-~~ip~~--~~i~------------------~--~~~~~ 207 (438)
- .++..+.+.-|+.+|..-+.|..+|+|||++|||.+ ..+|+. ..+. . .+..+
T Consensus 97 DGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm~NvinGG~HA~n~~d~QEFmI~p~ga~sf~e 176 (423)
T COG0148 97 DGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVINGGAHADNNLDIQEFMIMPVGAESFKE 176 (423)
T ss_pred cCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccceeeeecccccCCCCccceeEEEeecChHHHHH
Confidence 1 122346788999999999999999999999999974 334432 1111 1 12222
Q ss_pred HHHHH-------HH-HhhcCCcEEEEecC---CCch---HHHHH-HHHHHhhC----CCcEEEEeCC-------C-----
Q 013681 208 ASELA-------SK-YCKLGFSTLKLNVG---RNIT---ADFDV-LQAIHAVH----PHCSFILDAN-------E----- 256 (438)
Q Consensus 208 ~~~~~-------~~-~~~~Gf~~iKlKvG---~d~~---~di~~-l~aiR~~~----~~~~L~vDAN-------~----- 256 (438)
..+.. .+ +.+.|..+-+=.=| ++++ +-++. ++++.+++ .++.|.+|+- +
T Consensus 177 alr~~~ev~h~lk~~l~~~g~~t~vGDEGgfAP~l~~~eeald~i~~Aie~agy~~g~~i~~alD~Aasefy~~~~Y~~~ 256 (423)
T COG0148 177 ALRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGYEPGEDIALALDVAASEFYKDGKYVLE 256 (423)
T ss_pred HHHHHHHHHHHHHHHHhhcCccccccCCcccCCCCCccHHHHHHHHHHHHHhCCCCCcceeeeehhhhhhhccCCeeeec
Confidence 22211 11 22344444311111 2333 33443 46777764 3588999983 2
Q ss_pred --CCCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEE
Q 013681 257 --GYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 257 --~~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~ 332 (438)
.++.+|-++++..| ++|++ .+||+|+..+||+++++|.+.+ ...+-|..|. -++++.-+++-++.+..+.+.
T Consensus 257 ~~~~~~~e~i~~~~~Lv~~Ypi--vsiEDpl~E~Dweg~~~lt~~~--g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiL 332 (423)
T COG0148 257 GESLTSEELIEYYLELVKKYPI--VSIEDPLSEDDWEGFAELTKRL--GDKVQIVGDDLFVTNPKRLKKGIEKGAANAIL 332 (423)
T ss_pred CcccCHHHHHHHHHHHHHhCCE--EEEcCCCCchhHHHHHHHHHhh--CCeEEEECCcceecCHHHHHHHHHhccCceEE
Confidence 45777888888776 57875 5999999999999999999732 1236788887 667778889999999999999
Q ss_pred ecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 333 IKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 333 lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
+||..+| +|++.+.+.+|+++|+..++++.. |+. -..++|+|.+++++
T Consensus 333 IK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETe--D~tIAdLAVa~~ag 382 (423)
T COG0148 333 IKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETE--DTTIADLAVATNAG 382 (423)
T ss_pred EechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcc--cchHHHHHHHhCCC
Confidence 9999999 999999999999999999998743 332 23578999887664
|
|
| >PRK08350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-17 Score=158.88 Aligned_cols=287 Identities=15% Similarity=0.166 Sum_probs=196.1
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC---CCCchHHHHHHHHHH-HhhHhcCCCC
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP---LVTGDQTKALVKVRE-ACQFLRQSPP 141 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~---~~s~~~~~~~~~~~~-i~~~l~g~~~ 141 (438)
+|++|..+.+ -.|+ ..++|.|+|+|++| .|.+.++.-. .|......++..+++ +.|.|+|.++
T Consensus 3 ~I~~i~aReI--------lDSR----GnPTVEveV~~~~g-~gra~vPSD~d~~ry~~gV~~AV~nVn~~Iap~LiG~d~ 69 (341)
T PRK08350 3 VIENIIGRVA--------VLRG----GKYSVEVDVITDSG-FGRFAAPIDENPSLYIAEAHRAVSEVDEIIGPELIGFDA 69 (341)
T ss_pred eeEEEEEEEE--------EcCC----CCceEEEEEEECCc-EEEEEecCCCCcccccchHHHHHHHHHHHHHHHHcCCCH
Confidence 5777776543 2222 25789999999998 7777665421 122222344555554 7899999999
Q ss_pred CCHHHHHHHHHHHCCC-----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeee--eeeCCCCHHHHH--HH
Q 013681 142 TTLNFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTA--ITIPAVSPAEAS--EL 211 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g-----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~--~~i~~~~~~~~~--~~ 211 (438)
.++..+.+.|.. +.| ...+.+.-|+.+|..-+.|...|+|||++|||. ...+|+. --+..++.|.|. .+
T Consensus 70 ~dQ~~ID~~mie-lDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylgg~~~~~lPvP~~NiiNGG~~EFmI~p~e 148 (341)
T PRK08350 70 SEQELIDSYLWE-IDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPILEFAEDENFEYYVLVRD 148 (341)
T ss_pred HHHHHHHHHHHh-ccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhcCCCCCccCccceeeecCCceEEEECchH
Confidence 998888887755 222 223568899999999999999999999999884 3445542 222222332221 00
Q ss_pred HHHHhhcCCcEEEEecCCCchHHHHH-HHHHHhhC----CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCC
Q 013681 212 ASKYCKLGFSTLKLNVGRNITADFDV-LQAIHAVH----PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~d~~~di~~-l~aiR~~~----~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~ 286 (438)
+-+ ..+=|+.+|=-+-.+.++-++. +++|.++| .|+.+.+|+...+|.+|.+ +-+++|++ .+|| |+..
T Consensus 149 a~~-~~ev~~~lk~il~~~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~~~~t~~eli---~l~~kYPI--vsIE-p~~E 221 (341)
T PRK08350 149 LME-ITDVVDAVNKILENSKEVSLEGLSKASEKAGDELGLEVALGIAQKREMETEKVL---NLVEDNNI--AYIK-PIGD 221 (341)
T ss_pred hhh-hHHHHHHHHHHHhhChHHHHHHHHHHHHHhCCCccccEEEeeccCCCCCHHHHH---HHHHHCCE--EEEE-cCCc
Confidence 000 0111222221111144555665 47777765 2689999998568888876 77788986 5999 9996
Q ss_pred CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-c
Q 013681 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-E 364 (438)
Q Consensus 287 ~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-e 364 (438)
+ +++++|++. -..+-|.+|.-..+-... +.++++.+.+||..+| ++++++.+.+|+++|..+++++.. |
T Consensus 222 ~--~gw~~lt~~---g~~iqiVGDDLfvTN~~~----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSHRSGE 292 (341)
T PRK08350 222 E--ELFLELIAG---THGVFIDGEYLFRTRNIL----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAEAKYE 292 (341)
T ss_pred c--hHHHHHHhc---CCceEEEcccccccChhH----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeecCCCC
Confidence 5 999999972 246888988865554333 7889999999999999 999999999999999999998753 3
Q ss_pred hhHHHHHHHHHHhhcCCcce
Q 013681 365 TRLATGFALHLAAGLGCIKY 384 (438)
Q Consensus 365 s~ig~~a~~hla~al~~~~~ 384 (438)
+ --..++|||.+++++..
T Consensus 293 T--eD~~IAdLaVa~~agqI 310 (341)
T PRK08350 293 S--ADEALPHLAVGLRCPAM 310 (341)
T ss_pred C--cchhHHHHHHHhCCCcc
Confidence 3 23578899999887643
|
|
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-16 Score=119.76 Aligned_cols=66 Identities=29% Similarity=0.544 Sum_probs=60.9
Q ss_pred HHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc
Q 013681 237 VLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (438)
Q Consensus 237 ~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d 310 (438)
+|++||+. ||++.|++|+|++|++++|++++++|+++ .|||||++++|++++++|++ ++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~~d~~~~~~l~~----~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPPDDLDGLAELRQ----QTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSSTTSHHHHHHHHH----HCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCCCCHHHHHHHHH----hCCCCEEeC
Confidence 68999995 99999999999999999999999999996 39999999999999999986 699999987
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >PTZ00378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=141.31 Aligned_cols=296 Identities=16% Similarity=0.135 Sum_probs=195.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcE-----EEEEEecCCC------C-Cc-hHHHHHHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCV-----GWGEVAVVPL------V-TG-DQTKALVKVRE 131 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~-----G~GE~~~~~~------~-s~-~~~~~~~~~~~ 131 (438)
+.|++|..+.+- .|. ..+.|-|+|++++|.. -.||+..++. | .+ ....++. +.
T Consensus 49 ~~I~~i~areIl--------DSr----GnPTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~--~~ 114 (518)
T PTZ00378 49 DEIRALVHNEVL--------SPA----GETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ--NS 114 (518)
T ss_pred CeeeEEEEEEEE--------cCC----CCeeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH--hh
Confidence 448887766532 222 2567888899988843 1125554422 1 11 1112222 45
Q ss_pred HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC--------CCceeeee-
Q 013681 132 ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA--------SNSLSTAI- 198 (438)
Q Consensus 132 i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~--------~~~ip~~~- 198 (438)
+.|.|+|.++.++..+.+.|.+.- ......++..|+.||..-+.|+..++|||++|++. ...+|+..
T Consensus 115 i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P~~ 194 (518)
T PTZ00378 115 YFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQLCI 194 (518)
T ss_pred hHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCccce
Confidence 899999999999888777776531 12234678999999999999999999999999873 12344321
Q ss_pred -------------------eeCC----CCHHHHHHHH-HHH--hhcCCcEEEEecCC----------CchHHHHH-HHHH
Q 013681 199 -------------------TIPA----VSPAEASELA-SKY--CKLGFSTLKLNVGR----------NITADFDV-LQAI 241 (438)
Q Consensus 199 -------------------~i~~----~~~~~~~~~~-~~~--~~~Gf~~iKlKvG~----------d~~~di~~-l~ai 241 (438)
.+|. .+..+..+.. +-+ +..|+. .-+|. +.++-+++ .++|
T Consensus 195 NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~eeAL~li~eAi 271 (518)
T PTZ00378 195 TFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANLTDAVKLATEAL 271 (518)
T ss_pred EeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCHHHHHHHHHHHH
Confidence 0122 2333332222 111 112322 12221 12333444 3666
Q ss_pred HhhC--C--CcEEEEeCC----------------------C------------CCCHHHHHHHHHHh-hhCCCCCceEec
Q 013681 242 HAVH--P--HCSFILDAN----------------------E------------GYTSEEAVEVLGKL-NDMGVIPVLFEQ 282 (438)
Q Consensus 242 R~~~--~--~~~L~vDAN----------------------~------------~~s~~~A~~~l~~L-~~~~l~~~~iEq 282 (438)
+++| | ++.|.+|+- + .+|.+|.+++++.| ++|.--+.+||+
T Consensus 272 ~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kYP~iIvsIED 351 (518)
T PTZ00378 272 RAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAVPDIVVYVED 351 (518)
T ss_pred HHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHCCCceEEEec
Confidence 6654 3 477777751 1 14578888888665 678600358999
Q ss_pred CCCCCChhhHHHHHHhhccccCCeEEEcCCCCC--HHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEE-
Q 013681 283 PVHRDDWSGLHDVSNFARDTYGISVVADESCRS--LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLM- 358 (438)
Q Consensus 283 Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~--~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~- 358 (438)
|+..+||+++++|++.+ ...+-|..|.-..+ +.-+++.++...++.+.+||+.+| ++++++.+.+|+++|..++
T Consensus 352 p~~E~D~~gw~~lt~~l--G~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~~~v~ 429 (518)
T PTZ00378 352 THCDEDTFGLQRLQAAL--GDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEGRAVT 429 (518)
T ss_pred CCCchHHHHHHHHHHHh--CCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCCcEEc
Confidence 99999999999999753 23578888874444 788899999999999999999999 9999999999999999987
Q ss_pred --EccCCchhHHHHHHHHHHhhcCCc
Q 013681 359 --IDGMIETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 359 --~~s~~es~ig~~a~~hla~al~~~ 382 (438)
+++. |+ --..++|||.+++..
T Consensus 430 v~vShR--SG-eD~~IAdLAVa~ga~ 452 (518)
T PTZ00378 430 VLVQTL--AG-NAATAAHLAVAMGAR 452 (518)
T ss_pred cccCCC--cC-CccHHHHHHHHcCCC
Confidence 6653 33 456789999988764
|
|
| >KOG2670 consensus Enolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-13 Score=128.13 Aligned_cols=248 Identities=21% Similarity=0.327 Sum_probs=168.9
Q ss_pred HHHHH-HhhHhcCC--CCCCHHHHHHHHHHHCCC-----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC---CC--c
Q 013681 127 VKVRE-ACQFLRQS--PPTTLNFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA---SN--S 193 (438)
Q Consensus 127 ~~~~~-i~~~l~g~--~~~~~~~~~~~l~~~~~g-----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~---~~--~ 193 (438)
..+++ +.|.|++. ++.+...+.+.|... .| .....++-|+.+|+.-+-|...|+|||+.+..- .. -
T Consensus 67 ~niN~~i~pali~~~~dv~~Q~~iD~~mi~L-DGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~v 145 (433)
T KOG2670|consen 67 GNINNTIAPALIKKNLDVTDQKAIDNFMIEL-DGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYV 145 (433)
T ss_pred HHHHHHHHHHHHccCCChhhHHHHHHHHHhc-cCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceE
Confidence 33444 68888876 677777777766542 22 123568999999999999999999999977532 21 2
Q ss_pred eeeee--eeC--------------------CCCHHHHHHH-------HHHHhhcCCcEEEEecC------CCc---hHHH
Q 013681 194 LSTAI--TIP--------------------AVSPAEASEL-------ASKYCKLGFSTLKLNVG------RNI---TADF 235 (438)
Q Consensus 194 ip~~~--~i~--------------------~~~~~~~~~~-------~~~~~~~Gf~~iKlKvG------~d~---~~di 235 (438)
+|+.+ .+. ..+.++..+. .+..+..-|..---.|| +++ ++-+
T Consensus 146 lPVPaFNVlNGGsHAGn~lAmQEfMIlP~ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L 225 (433)
T KOG2670|consen 146 LPVPAFNVLNGGSHAGNKLAMQEFMILPVGADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEAL 225 (433)
T ss_pred ecccceeeecCCccccchhhhhhheecccCchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHH
Confidence 34321 111 1122222211 11112222222222333 133 3444
Q ss_pred HHH-HHHHhhC--CCcEEEEeCC-------CC---------------CCHHHHHHHHHH-hhhCCCCCceEecCCCCCCh
Q 013681 236 DVL-QAIHAVH--PHCSFILDAN-------EG---------------YTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDW 289 (438)
Q Consensus 236 ~~l-~aiR~~~--~~~~L~vDAN-------~~---------------~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~ 289 (438)
+++ ++|++.+ ..++|.+|.. +. ++.++..++.+. +++|.+ ..||+|+.++||
T Consensus 226 ~Li~~Ai~kagyt~kikIgmDvAaseF~~dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPi--vSiEDPFdqdDw 303 (433)
T KOG2670|consen 226 DLIKEAINKAGYTGKVKIGMDVAASEFYKDGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPI--VSIEDPFDQDDW 303 (433)
T ss_pred HHHHHHHHhcCCCCceEEEEeechhhhhcCCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCe--eeecCCcchhhH
Confidence 543 6666665 3688888873 11 366776655544 578876 699999999999
Q ss_pred hhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chh
Q 013681 290 SGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETR 366 (438)
Q Consensus 290 ~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ 366 (438)
+.+..+.. .+++-|..|. .++++..+++.++..+++.+-+|+..+| +|++.+.+.+|++.|.++|++... |+
T Consensus 304 ~~w~~~~~----~~~iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGET- 378 (433)
T KOG2670|consen 304 EAWSKFFK----EVGIQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGET- 378 (433)
T ss_pred HHHHHHhh----ccceEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCc-
Confidence 99999875 5899999988 7888888999999999999999999999 999999999999999999998652 32
Q ss_pred HHHHHHHHHHhhcCCcc
Q 013681 367 LATGFALHLAAGLGCIK 383 (438)
Q Consensus 367 ig~~a~~hla~al~~~~ 383 (438)
--..++.|..+++++.
T Consensus 379 -eDtFIaDL~VGl~tgq 394 (433)
T KOG2670|consen 379 -EDTFIADLVVGLGTGQ 394 (433)
T ss_pred -ccchHHHhhhhhccce
Confidence 2346778888877654
|
|
| >COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-11 Score=115.26 Aligned_cols=285 Identities=17% Similarity=0.199 Sum_probs=189.4
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCCCCc---hHH-----HHHHHHH-HHhhHhcCCCCCCHHHHHHHHHHHCCCCh-hhH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPLVTG---DQT-----KALVKVR-EACQFLRQSPPTTLNFALDEIARILPGSE-FAS 162 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~~s~---~~~-----~~~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~s 162 (438)
.+.+-|.+..++|.+-||.|+...+ |+ ..+ .....++ .+.|.|+|.+....-.......+.+.++. ..+
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQY-SGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~~~LhtA 128 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQY-SGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDGNLLHTA 128 (410)
T ss_pred cceeeEEEEEecCceeeccceeeEe-cCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccCCcchHH
Confidence 4567788888899999999997643 33 111 1111122 26789999886543222112222223332 356
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHhC----CC--CCceeeeeeeCCC---CHHHHHHHHHHHhhcCCcEEEEecCCCchH
Q 013681 163 VRAGVEMALIDAVANSIDIPLWRLFG----GA--SNSLSTAITIPAV---SPAEASELASKYCKLGFSTLKLNVGRNITA 233 (438)
Q Consensus 163 a~~aie~AL~Dl~gk~~g~Pl~~Llg----g~--~~~ip~~~~i~~~---~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~ 233 (438)
++.|+.+||.|+.+-..+..-.+.+- -+ .+++|++...+-. ..+.|.-..-..+-.|.-.-.-++|.|-++
T Consensus 129 vrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNsve~~G~dG~~ 208 (410)
T COG3799 129 VRYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINSVEELGFDGEK 208 (410)
T ss_pred HHhhHHHHHHHHHHHhhccchheeehhhhCCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhhHHHhCCchHH
Confidence 79999999999999887766554443 32 3678877654321 123332111111112211111124554444
Q ss_pred HHHHHHHH----HhhC---CCcEEEEeCCCC------CCHHHHHHHHHHhhh--CCCCCceEecCCCCC----ChhhHHH
Q 013681 234 DFDVLQAI----HAVH---PHCSFILDANEG------YTSEEAVEVLGKLND--MGVIPVLFEQPVHRD----DWSGLHD 294 (438)
Q Consensus 234 di~~l~ai----R~~~---~~~~L~vDAN~~------~s~~~A~~~l~~L~~--~~l~~~~iEqPl~~~----d~~~~a~ 294 (438)
-.+.++.+ +..+ ....|.+|..|. +++...-.|+.+|++ -++ +.+||-|...+ |++.|++
T Consensus 209 l~Eyv~Wls~R~~~~g~~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~-pL~IEgP~DaGs~~aQI~~~a~ 287 (410)
T COG3799 209 LREYVRWLSDRILSKGTSGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGL-PLYIEGPVDAGSKPAQIRLLAA 287 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCC-ceeeeccccCCCCHHHHHHHHH
Confidence 44444444 3333 346899999874 577666677777763 233 35899999754 6778888
Q ss_pred HHHhhc-cccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHHHHH
Q 013681 295 VSNFAR-DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATGF 371 (438)
Q Consensus 295 L~~~~r-~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~a 371 (438)
+.+.+. .-+++.|..||.|.+.+|+....+..+++.+|+|-..+| +.+..+.+.+|+.+.+..++++. .|+.++...
T Consensus 288 i~~~L~~~Gs~v~IVaDEwCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvSAr~ 367 (410)
T COG3799 288 ITKELTRLGSGVKIVADEWCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVSART 367 (410)
T ss_pred HHHHHhhcCCcceEeehhhcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccchhhhh
Confidence 876552 357899999999999999999999999999999999999 99999999999999999998875 599999999
Q ss_pred HHHHHhhc
Q 013681 372 ALHLAAGL 379 (438)
Q Consensus 372 ~~hla~al 379 (438)
++|++.+.
T Consensus 368 cvHValAt 375 (410)
T COG3799 368 CVHVALAT 375 (410)
T ss_pred hhhhhhhh
Confidence 99998764
|
|
| >PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=113.53 Aligned_cols=186 Identities=14% Similarity=0.229 Sum_probs=118.9
Q ss_pred CceeeeeeeCCCC---HHHHH-HHHHHHhhcC-CcEEEEecCCCchHHHHHHHHHHh----hC-C--CcEEEEeCCCC--
Q 013681 192 NSLSTAITIPAVS---PAEAS-ELASKYCKLG-FSTLKLNVGRNITADFDVLQAIHA----VH-P--HCSFILDANEG-- 257 (438)
Q Consensus 192 ~~ip~~~~i~~~~---~~~~~-~~~~~~~~~G-f~~iKlKvG~d~~~di~~l~aiR~----~~-~--~~~L~vDAN~~-- 257 (438)
.++|++.+.+-+. .+.|. ..+. .+-.| |..+. |+|.+-+.=.+.++.++. ++ + ...|.+|..|.
T Consensus 4 ~pvpif~QsGddry~n~DKmIlK~~d-vlPH~linnve-klG~~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG 81 (248)
T PF07476_consen 4 EPVPIFAQSGDDRYTNVDKMILKGVD-VLPHALINNVE-KLGPDGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIG 81 (248)
T ss_dssp ----EE---TT-TTHHHHHHHHTT-S-EEEETT---CC-CC-TTSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHH
T ss_pred CCCcccccCCchhhhhHHHHHHhCCC-cCchHhhhCHH-HhCcchHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHH
Confidence 3567766655432 34442 2222 22334 78888 999876666666655554 33 3 46899999875
Q ss_pred --C--CHHHHHHHHHHhh----hCCCCCceEecCCCCC----ChhhHHHHHHhhcc-ccCCeEEEcCCCCCHHHHHHHHH
Q 013681 258 --Y--TSEEAVEVLGKLN----DMGVIPVLFEQPVHRD----DWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQ 324 (438)
Q Consensus 258 --~--s~~~A~~~l~~L~----~~~l~~~~iEqPl~~~----d~~~~a~L~~~~r~-~~~iPIa~dEsl~~~~d~~~ll~ 324 (438)
| +++...+|+.+|+ +|.+ .||-|+..+ |++.|++|++.+++ .+++.|.+||.+.+.+|++.+.+
T Consensus 82 ~~f~~d~~~~adYl~~l~~aA~P~~L---~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~d 158 (248)
T PF07476_consen 82 LAFDNDPDRMADYLAELEEAAAPFKL---RIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFAD 158 (248)
T ss_dssp HHTTT-HHHHHHHHHHHHHHHTTS-E---EEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCee---eeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHh
Confidence 3 5777778888776 4554 899999865 57888888887753 57889999999999999999999
Q ss_pred cCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHHHHHHHHHHhhcCCc
Q 013681 325 ENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 325 ~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~a~~hla~al~~~ 382 (438)
.++.|++|+|..-+| +..+.+.+-+|+++|++.+.++. .|+.++.-+++|+|.+.+..
T Consensus 159 a~A~dmVQIKtPDLGgi~ntieAvlyCk~~gvgaY~GGtCNETd~SArv~~hvalAt~p~ 218 (248)
T PF07476_consen 159 AKAADMVQIKTPDLGGINNTIEAVLYCKEHGVGAYLGGTCNETDRSARVCVHVALATRPD 218 (248)
T ss_dssp TT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-EEEE---TTS-HHHHHHHHHHHHHCT-S
T ss_pred cCCcCEEEecCCCccchhhHHHHHHHHHhcCCceeecccccccchhHHHHHHHHHhcCHH
Confidence 999999999999998 99999999999999999999875 59999999999999886544
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-10 Score=110.84 Aligned_cols=166 Identities=21% Similarity=0.349 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHH-HhhcCCcEEEEecCCCchHHHHHHHHHHhhC--CCcEEEEeCCC-------CCCHHHHHHHHHHh-
Q 013681 202 AVSPAEASELASK-YCKLGFSTLKLNVGRNITADFDVLQAIHAVH--PHCSFILDANE-------GYTSEEAVEVLGKL- 270 (438)
Q Consensus 202 ~~~~~~~~~~~~~-~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~--~~~~L~vDAN~-------~~s~~~A~~~l~~L- 270 (438)
+.++++..+.+.+ ..+.||.. ++++|.|+... +.+ .+-...++... ..|.+|.+++...|
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAs--------efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li 146 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAAS--------EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLI 146 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GG--------GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHH--------HhhhccCCeEEEeecccccccccccCHHHHHHHHHHHH
Confidence 4566666554433 34578877 77776543211 122 12334444332 36889999888775
Q ss_pred hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHH
Q 013681 271 NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (438)
Q Consensus 271 ~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~ 348 (438)
++|.+ .+||+|+..+||+++++|++.+. -.+-|.+|. ..+++..+++.++.++++.+.+|++.+| +|++++.+.
T Consensus 147 ~~YPI--vsIEDpf~edD~e~w~~lt~~~g--~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~~ 222 (295)
T PF00113_consen 147 KKYPI--VSIEDPFDEDDWEGWAKLTKRLG--DKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAVK 222 (295)
T ss_dssp HHS-E--EEEESSS-TT-HHHHHHHHHHHT--TTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHHH
T ss_pred HhcCe--EEEEccccccchHHHHHHHHhhh--cceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHHH
Confidence 68885 59999999999999999997431 238899888 6677888899999999999999999999 999999999
Q ss_pred HHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 349 ATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 349 ~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
+|+++|..+++++.. |+ --..++|||.++++.
T Consensus 223 ~a~~~g~~~vvS~rsgEt--eD~~iadLaVg~~a~ 255 (295)
T PF00113_consen 223 LAKSAGWGVVVSHRSGET--EDTFIADLAVGLGAG 255 (295)
T ss_dssp HHHHTT-EEEEE--SS----S--HHHHHHHHTT-S
T ss_pred HHHHCCceeeccCCCCCc--CchhHHHHHhccCcC
Confidence 999999999998753 33 235788999998765
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E .... |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.3e-09 Score=97.75 Aligned_cols=143 Identities=22% Similarity=0.336 Sum_probs=119.2
Q ss_pred HHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCCc
Q 013681 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHC 248 (438)
Q Consensus 185 ~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~~ 248 (438)
.+++......|+..++..++++++.+.++.+.+.||..|++++|. +.+...+.++++|+..+ +
T Consensus 46 ~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~ 124 (231)
T cd02801 46 RLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-I 124 (231)
T ss_pred HhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-C
Confidence 455555677888889988899999998988888899999999874 45567788899998544 7
Q ss_pred EEEEeCCCCCCHH-HHHHHHHHhhhCCCCCceE-------ec-CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH
Q 013681 249 SFILDANEGYTSE-EAVEVLGKLNDMGVIPVLF-------EQ-PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (438)
Q Consensus 249 ~L~vDAN~~~s~~-~A~~~l~~L~~~~l~~~~i-------Eq-Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~ 319 (438)
.+.++.|.+|+.+ ++.++++.+++.++. +| +| +....+++..+++++ ..++||.++..+.+.+++
T Consensus 125 ~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~i~~----~~~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 125 PVTVKIRLGWDDEEETLELAKALEDAGAS--ALTVHGRTREQRYSGPADWDYIAEIKE----AVSIPVIANGDIFSLEDA 198 (231)
T ss_pred CEEEEEeeccCCchHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCCHHHHHHHHh----CCCCeEEEeCCCCCHHHH
Confidence 7899999999876 899999999999874 78 76 666678888887765 688999999999999999
Q ss_pred HHHHHcCCccEEEec
Q 013681 320 QKVMQENLASVVNIK 334 (438)
Q Consensus 320 ~~ll~~~a~d~i~lk 334 (438)
.++++.+.+|.+++=
T Consensus 199 ~~~l~~~gad~V~ig 213 (231)
T cd02801 199 LRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHhcCCCEEEEc
Confidence 999998778988874
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.4e-09 Score=104.33 Aligned_cols=121 Identities=20% Similarity=0.334 Sum_probs=97.9
Q ss_pred HHHHHHHHHhhcCCcEEEEecCC------------CchHH-------------HHHHHHHHh-hCCCcEEEEeCC-----
Q 013681 207 EASELASKYCKLGFSTLKLNVGR------------NITAD-------------FDVLQAIHA-VHPHCSFILDAN----- 255 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKvG~------------d~~~d-------------i~~l~aiR~-~~~~~~L~vDAN----- 255 (438)
++.+.++...+.||..|+|+.|. +...| ++.+++||+ +++++.|.+|.|
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 34566777888999999999852 12233 889999998 578988998855
Q ss_pred -CCCCHHHHHHHHHHhhhCCCCCceEe-----------cCCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHH
Q 013681 256 -EGYTSEEAVEVLGKLNDMGVIPVLFE-----------QPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (438)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~~l~~~~iE-----------qPl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~l 322 (438)
++|+.++++++++.|+++++ .||| .|+. ..+++.++++++ .+++||+.++.+.++++++++
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gv--d~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~G~i~t~~~a~~~ 308 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGV--DLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ----EAGIPVIAVGLITDPEQAEAI 308 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CEEEECCCCCCcccccCCCccccHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHH
Confidence 89999999999999999987 4999 4663 344566666664 689999999999999999999
Q ss_pred HHcCCccEEEe
Q 013681 323 MQENLASVVNI 333 (438)
Q Consensus 323 l~~~a~d~i~l 333 (438)
++.+.+|+|.+
T Consensus 309 l~~g~aD~V~~ 319 (336)
T cd02932 309 LESGRADLVAL 319 (336)
T ss_pred HHcCCCCeehh
Confidence 99998998765
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.7e-07 Score=90.73 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=95.8
Q ss_pred HHHHHHHHhhcCCcEEEEecCC---------------------C----chHHHHHHHHHHh-hCCCcEEEEeCC------
Q 013681 208 ASELASKYCKLGFSTLKLNVGR---------------------N----ITADFDVLQAIHA-VHPHCSFILDAN------ 255 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~---------------------d----~~~di~~l~aiR~-~~~~~~L~vDAN------ 255 (438)
..+.++..++.||..|.|..|. + .+-.++.|++||+ +++++.|.+|.|
T Consensus 151 ~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~ 230 (338)
T cd04733 151 FAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR 230 (338)
T ss_pred HHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence 3556677788999999998762 1 2235678999998 578999999998
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEe-------cCCCC--CC----------hhhHHHHHHhhccccCCeEEEcCCCCCH
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVHR--DD----------WSGLHDVSNFARDTYGISVVADESCRSL 316 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iE-------qPl~~--~d----------~~~~a~L~~~~r~~~~iPIa~dEsl~~~ 316 (438)
++|+.++++++++.|++.++ .||| +|... .+ ++..++++ +.+++||++++.+.++
T Consensus 231 ~g~~~eea~~ia~~Le~~Gv--d~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~t~ 304 (338)
T cd04733 231 GGFTEEDALEVVEALEEAGV--DLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR----KVTKTPLMVTGGFRTR 304 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCC--CEEEecCCCCCCccccccccCCccccchhhHHHHHHHH----HHcCCCEEEeCCCCCH
Confidence 68999999999999999987 4998 66632 11 22333444 4689999999999999
Q ss_pred HHHHHHHHcCCccEEEec
Q 013681 317 NDVQKVMQENLASVVNIK 334 (438)
Q Consensus 317 ~d~~~ll~~~a~d~i~lk 334 (438)
++++++++.+.+|+|.+=
T Consensus 305 ~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 305 AAMEQALASGAVDGIGLA 322 (338)
T ss_pred HHHHHHHHcCCCCeeeeC
Confidence 999999999999998763
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-06 Score=87.52 Aligned_cols=120 Identities=20% Similarity=0.277 Sum_probs=93.2
Q ss_pred HHHHHHHHhhcCCcEEEEecCC------------C---------c----hHHHHHHHHHHh-hCCCcEEEEeCC------
Q 013681 208 ASELASKYCKLGFSTLKLNVGR------------N---------I----TADFDVLQAIHA-VHPHCSFILDAN------ 255 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~------------d---------~----~~di~~l~aiR~-~~~~~~L~vDAN------ 255 (438)
..+.++...+.||..|+|+.+. + + +-..+.+++||+ .++++.|.++.|
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 3455677788999999999862 1 1 123788999998 478888888777
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEe-------cCCC---------CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVH---------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iE-------qPl~---------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~ 319 (438)
++|+.++++++++.|+++++. ||+ +|.. ..+++..+.+++ .+++||+..+.+.+.+++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK----AVKIPVIAVGGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHHHHHHHHH----HCCCCEEEeCCCCCHHHH
Confidence 458999999999999999874 884 6654 223444455543 678999999999999999
Q ss_pred HHHHHcCCccEEEe
Q 013681 320 QKVMQENLASVVNI 333 (438)
Q Consensus 320 ~~ll~~~a~d~i~l 333 (438)
.++++.+.+|+|.+
T Consensus 297 ~~~l~~g~aD~V~i 310 (327)
T cd02803 297 EEILAEGKADLVAL 310 (327)
T ss_pred HHHHHCCCCCeeee
Confidence 99999888998776
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-06 Score=87.32 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=91.3
Q ss_pred HHHHHHHHhhcCCcEEEEecCC---------------------C----chHHHHHHHHHHh-hCCCcEEE-----EeCC-
Q 013681 208 ASELASKYCKLGFSTLKLNVGR---------------------N----ITADFDVLQAIHA-VHPHCSFI-----LDAN- 255 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~---------------------d----~~~di~~l~aiR~-~~~~~~L~-----vDAN- 255 (438)
+.+.|+...+.||..|+|..+. + .+..++.+++||+ +++++.+. .|.+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 3455677788999999998731 1 3446788999999 57775554 4554
Q ss_pred CCCCHHHHHHHHHHhhhCCCC-----CceEecCCCCCC--------hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHH
Q 013681 256 EGYTSEEAVEVLGKLNDMGVI-----PVLFEQPVHRDD--------WSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~-----~~~iEqPl~~~d--------~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~l 322 (438)
++|+.++++++++.|+++++. ..|.|+|++..+ .+.+++++ +.+++||+..+.+.++++++++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----HhCCCCEEEcCCCCCHHHHHHH
Confidence 678999999999999998742 125688875431 22234444 4789999999999999999999
Q ss_pred HHcCCccEEEe
Q 013681 323 MQENLASVVNI 333 (438)
Q Consensus 323 l~~~a~d~i~l 333 (438)
++.+.+|+|.+
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999998765
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ] | Back alignment and domain information |
|---|
Probab=98.13 E-value=8.8e-05 Score=64.48 Aligned_cols=95 Identities=26% Similarity=0.233 Sum_probs=65.2
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCC----------------CCc-hHHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARI 154 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~~~~-i~~~l~g~~~~~~~~~~~~l~~~ 154 (438)
.+++.|+|.+++|..|.+-++.... |.+ ....++..+++ +.|.|+|.++.++.++.+.|.+.
T Consensus 16 ~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~vn~~i~~~L~g~~~~dQ~~iD~~L~~l 95 (132)
T PF03952_consen 16 NPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVENVNEIIAPALIGLDPTDQEEIDQILIEL 95 (132)
T ss_dssp -EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHHHHHTHHHHHTTSBTT-HHHHHHHHHHH
T ss_pred CceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhhHHHHHHHHHHhcchhhHHHhCccceec
Confidence 6789999999999888887764311 111 12234444554 78999999999998887777653
Q ss_pred C----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHh
Q 013681 155 L----PGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187 (438)
Q Consensus 155 ~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Ll 187 (438)
- ......++..|+.+|++-+.|+..++|||++|
T Consensus 96 DgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 96 DGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred cCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 1 11233678999999999999999999999975
|
In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A .... |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0061 Score=60.85 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=103.5
Q ss_pred CceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhC-CCcEEEEeC
Q 013681 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH-PHCSFILDA 254 (438)
Q Consensus 192 ~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~-~~~~L~vDA 254 (438)
...|+..++...+|+++.+.++...+.||..|-+..|- +++.-.+.++++|+.. +++.+.|=-
T Consensus 61 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKi 140 (312)
T PRK10550 61 SGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKV 140 (312)
T ss_pred CCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 34677778888899999988888888999999998872 2334455677888753 344444444
Q ss_pred CCCCC-HHHHHHHHHHhhhCCCC-----CceEecCCCC--CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 255 NEGYT-SEEAVEVLGKLNDMGVI-----PVLFEQPVHR--DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 255 N~~~s-~~~A~~~l~~L~~~~l~-----~~~iEqPl~~--~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
.-+|+ .+++.++++.+++.++. ...-+|.... -+|+..+++.+ ..++||...=.+.+.++..++++..
T Consensus 141 R~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~----~~~iPVi~nGdI~t~~da~~~l~~~ 216 (312)
T PRK10550 141 RLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQ----RLTIPVIANGEIWDWQSAQQCMAIT 216 (312)
T ss_pred ECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHh----hcCCcEEEeCCcCCHHHHHHHHhcc
Confidence 44565 45688999999987643 2222453322 26777777765 5789999988999999999999888
Q ss_pred CccEEEecCCcch
Q 013681 327 LASVVNIKLAKFG 339 (438)
Q Consensus 327 a~d~i~lk~~~~G 339 (438)
.+|.|.+==..+|
T Consensus 217 g~DgVmiGRg~l~ 229 (312)
T PRK10550 217 GCDAVMIGRGALN 229 (312)
T ss_pred CCCEEEEcHHhHh
Confidence 8999988554444
|
|
| >PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4 | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.005 Score=54.09 Aligned_cols=95 Identities=21% Similarity=0.369 Sum_probs=60.9
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCC--CCc-h----HHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHCCCCh-hhHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPL--VTG-D----QTKALVKV-REACQFLRQSPPTTLNFALDEIARILPGSE-FASV 163 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~--~s~-~----~~~~~~~~-~~i~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~sa 163 (438)
-+.+.|.+..+||.+.||.|+..-+ .++ + ..+....+ ..+.|.|.|.+.......-+.+.....|.. ..++
T Consensus 50 gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~~~g~rlhtAi 129 (159)
T PF05034_consen 50 GESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDELVDGKRLHTAI 129 (159)
T ss_dssp EEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH-ETTEE--HHH
T ss_pred CcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhcccCCcchhHH
Confidence 5678899999999999999997632 122 1 11222223 347899999999988877777776544432 3578
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHh
Q 013681 164 RAGVEMALIDAVANSIDIPLWRLF 187 (438)
Q Consensus 164 ~~aie~AL~Dl~gk~~g~Pl~~Ll 187 (438)
+.||.+||+|+.|+..+.-..+.+
T Consensus 130 RYGvsQALL~A~A~a~~~tmaeVi 153 (159)
T PF05034_consen 130 RYGVSQALLDAAAKAQRTTMAEVI 153 (159)
T ss_dssp HHHHHHHHHHHHHHHCTS-HHHHH
T ss_pred HHhHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999999877655544
|
3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.015 Score=58.32 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=98.6
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCCcEEEEeCCCC
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDANEG 257 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~~~L~vDAN~~ 257 (438)
.|+..++...+++++.+.++...+.||..|-+..|- +++.-.+.++++|+.. ++.+.+=.+.+
T Consensus 65 ~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G 143 (321)
T PRK10415 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTG 143 (321)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEcc
Confidence 455567777899999888887778999999999882 2344455677777743 22233322355
Q ss_pred CCH--HHHHHHHHHhhhCCCCCceE-------ecCCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 258 YTS--EEAVEVLGKLNDMGVIPVLF-------EQPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 258 ~s~--~~A~~~l~~L~~~~l~~~~i-------EqPl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
|+. ++++++++.+++.++. +| +|... ..+|+..+++++ .+++||.+.=.+.+.++++++++...
T Consensus 144 ~~~~~~~~~~~a~~le~~G~d--~i~vh~rt~~~~~~G~a~~~~i~~ik~----~~~iPVI~nGgI~s~~da~~~l~~~g 217 (321)
T PRK10415 144 WAPEHRNCVEIAQLAEDCGIQ--ALTIHGRTRACLFNGEAEYDSIRAVKQ----KVSIPVIANGDITDPLKARAVLDYTG 217 (321)
T ss_pred ccCCcchHHHHHHHHHHhCCC--EEEEecCccccccCCCcChHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHhccC
Confidence 654 3688999999988864 55 33332 246777777764 68899999889999999999998778
Q ss_pred ccEEEecCCcch
Q 013681 328 ASVVNIKLAKFG 339 (438)
Q Consensus 328 ~d~i~lk~~~~G 339 (438)
+|.+++=-..+|
T Consensus 218 adgVmiGR~~l~ 229 (321)
T PRK10415 218 ADALMIGRAAQG 229 (321)
T ss_pred CCEEEEChHhhc
Confidence 999998654443
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=58.61 Aligned_cols=144 Identities=23% Similarity=0.360 Sum_probs=96.3
Q ss_pred HHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCC
Q 013681 184 WRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPH 247 (438)
Q Consensus 184 ~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~ 247 (438)
..++......-|+...+...+|+.+.+.++...+.||..|-+..|- +++.-.+.|+++++..+
T Consensus 44 ~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~- 122 (309)
T PF01207_consen 44 IRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP- 122 (309)
T ss_dssp HHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-
T ss_pred eecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-
Confidence 3455544445677788888899999888887766799999999982 34555667788887543
Q ss_pred cEEEEeCCCCCC--HHHHHHHHHHhhhCCCCCceE-------ecCCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHH
Q 013681 248 CSFILDANEGYT--SEEAVEVLGKLNDMGVIPVLF-------EQPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLN 317 (438)
Q Consensus 248 ~~L~vDAN~~~s--~~~A~~~l~~L~~~~l~~~~i-------EqPl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~ 317 (438)
+.+.+-.--+|+ .++.+++++.|++.++. +| +|--. +-||+..+++++ ..++||.+.=.+.+.+
T Consensus 123 ~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~----~~~ipvi~NGdI~s~~ 196 (309)
T PF01207_consen 123 IPVSVKIRLGWDDSPEETIEFARILEDAGVS--AITVHGRTRKQRYKGPADWEAIAEIKE----ALPIPVIANGDIFSPE 196 (309)
T ss_dssp SEEEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHH----C-TSEEEEESS--SHH
T ss_pred cceEEecccccccchhHHHHHHHHhhhcccc--eEEEecCchhhcCCcccchHHHHHHhh----cccceeEEcCccCCHH
Confidence 455555555555 78899999999999864 55 44443 557999998886 6789999999999999
Q ss_pred HHHHHHHcCCccEEEec
Q 013681 318 DVQKVMQENLASVVNIK 334 (438)
Q Consensus 318 d~~~ll~~~a~d~i~lk 334 (438)
|+.++++.-.+|.+++=
T Consensus 197 d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 197 DAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHHCCCH-SSEEEES
T ss_pred HHHHHHHhcCCcEEEEc
Confidence 99999887678888864
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.084 Score=53.24 Aligned_cols=144 Identities=17% Similarity=0.245 Sum_probs=100.5
Q ss_pred HHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhh--CC
Q 013681 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV--HP 246 (438)
Q Consensus 185 ~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~--~~ 246 (438)
.++.-....-|+..++...+|+++.+.++...+.||..|-+..|- +++.-.+.++++|+. .|
T Consensus 56 ~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~p 135 (333)
T PRK11815 56 RLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIP 135 (333)
T ss_pred HHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCc
Confidence 344433445577788888999999988888888899999988762 233445677888874 23
Q ss_pred -CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe--------cC--------CCCCChhhHHHHHHhhccc-cCCeEE
Q 013681 247 -HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE--------QP--------VHRDDWSGLHDVSNFARDT-YGISVV 308 (438)
Q Consensus 247 -~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE--------qP--------l~~~d~~~~a~L~~~~r~~-~~iPIa 308 (438)
.+++|+-..+.-+.+++.++++.+++.++. +|. |- +++-+|+..+++++ . .++||.
T Consensus 136 VsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~----~~~~iPVI 209 (333)
T PRK11815 136 VTVKHRIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKR----DFPHLTIE 209 (333)
T ss_pred eEEEEEeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEcCCchhhcCCCccccccCCCcCHHHHHHHHH----hCCCCeEE
Confidence 555565433333567788999999887764 342 11 12345777777764 4 379999
Q ss_pred EcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 309 ADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 309 ~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+.=.+.+++|+.++++ + +|.|++==.
T Consensus 210 ~nGgI~s~eda~~~l~-~-aDgVmIGRa 235 (333)
T PRK11815 210 INGGIKTLEEAKEHLQ-H-VDGVMIGRA 235 (333)
T ss_pred EECCcCCHHHHHHHHh-c-CCEEEEcHH
Confidence 8888999999999997 3 888887443
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.042 Score=56.50 Aligned_cols=124 Identities=13% Similarity=0.179 Sum_probs=82.9
Q ss_pred HHHHHHHhhcCCcEEEEec---CC-------------------CchH----HHHHHHHHHh-hCCC--cEEEEeC-----
Q 013681 209 SELASKYCKLGFSTLKLNV---GR-------------------NITA----DFDVLQAIHA-VHPH--CSFILDA----- 254 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKv---G~-------------------d~~~----di~~l~aiR~-~~~~--~~L~vDA----- 254 (438)
.+.|+...+.||..+.|.. |- +++. -++.|++||+ ++++ +.+++.+
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~ 232 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIK 232 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcc
Confidence 3456667789999999997 41 1222 3567899998 4666 3344432
Q ss_pred -------------CCCCCHHHHHHHHHHhhhCCCCCceEec-------CC---CCCC-hh-hHHHHHHhhccccCCeEEE
Q 013681 255 -------------NEGYTSEEAVEVLGKLNDMGVIPVLFEQ-------PV---HRDD-WS-GLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 255 -------------N~~~s~~~A~~~l~~L~~~~l~~~~iEq-------Pl---~~~d-~~-~~a~L~~~~r~~~~iPIa~ 309 (438)
+++++.++++++++.|++.++. +|+= +. ++.. .. .+..+++.+++.+++||.+
T Consensus 233 ~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD--~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~ 310 (382)
T cd02931 233 DLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYD--ALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIM 310 (382)
T ss_pred ccccccccccccccCCCCHHHHHHHHHHHHHhCCC--EEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEE
Confidence 4478999999999999987753 5532 11 0000 00 1122333344568899998
Q ss_pred cCCCCCHHHHHHHHHcCCccEEEec
Q 013681 310 DESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 310 dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
-=.+.++++..++++.+.+|.|.+=
T Consensus 311 ~G~i~~~~~~~~~l~~g~~D~V~~g 335 (382)
T cd02931 311 AGRMEDPELASEAINEGIADMISLG 335 (382)
T ss_pred eCCCCCHHHHHHHHHcCCCCeeeec
Confidence 8889999999999999989987753
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.052 Score=54.47 Aligned_cols=144 Identities=21% Similarity=0.309 Sum_probs=108.3
Q ss_pred CceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCCcEEEEeCC
Q 013681 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDAN 255 (438)
Q Consensus 192 ~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~~~L~vDAN 255 (438)
...|+...+...+|+.+.+.++...+.||..|-|..|- +++.-.+.|+++++..+++.+.|=--
T Consensus 65 ~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiR 144 (323)
T COG0042 65 EERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIR 144 (323)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 34566677888899999998988889999999999882 34555667888888654777777777
Q ss_pred CCCCHHH--HHHHHHHhhhCCCCCceE-----ecC-CCCCChhhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHHHHcC
Q 013681 256 EGYTSEE--AVEVLGKLNDMGVIPVLF-----EQP-VHRDDWSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 256 ~~~s~~~--A~~~l~~L~~~~l~~~~i-----EqP-l~~~d~~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
-+|+.++ +.++++.+++.+..-.++ +|= ..+-||+..+++.+ ..+ +||.+.-.+.+.++.++.++..
T Consensus 145 lG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~----~~~~ipvi~NGdI~s~~~a~~~l~~t 220 (323)
T COG0042 145 LGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKE----AVPSIPVIANGDIKSLEDAKEMLEYT 220 (323)
T ss_pred cccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHH----hCCCCeEEeCCCcCCHHHHHHHHHhh
Confidence 7887665 778888888876531122 111 11247888998886 456 9999999999999999999988
Q ss_pred CccEEEecCCcch
Q 013681 327 LASVVNIKLAKFG 339 (438)
Q Consensus 327 a~d~i~lk~~~~G 339 (438)
.+|.+++-=.-.|
T Consensus 221 g~DgVMigRga~~ 233 (323)
T COG0042 221 GADGVMIGRGALG 233 (323)
T ss_pred CCCEEEEcHHHcc
Confidence 8999988654443
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.076 Score=53.78 Aligned_cols=120 Identities=16% Similarity=0.282 Sum_probs=83.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHhh-CCC--cEEEEeC----CC
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAV-HPH--CSFILDA----NE 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~~-~~~--~~L~vDA----N~ 256 (438)
.+.|+...+.||..+-|..+. +++. -++.+++||+. +++ +.+|+-+ .+
T Consensus 144 ~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~ 223 (343)
T cd04734 144 ADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEG 223 (343)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCC
Confidence 455667778999999999831 1222 35678999984 666 4566655 35
Q ss_pred CCCHHHHHHHHHHhhhCC-CCCceEe-------cC------CCC-----C-ChhhHHHHHHhhccccCCeEEEcCCCCCH
Q 013681 257 GYTSEEAVEVLGKLNDMG-VIPVLFE-------QP------VHR-----D-DWSGLHDVSNFARDTYGISVVADESCRSL 316 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~-l~~~~iE-------qP------l~~-----~-d~~~~a~L~~~~r~~~~iPIa~dEsl~~~ 316 (438)
+++.++++++++.|++.+ +. ||+ ++ .++ . +++..+.+ ++.+++||...=.+.++
T Consensus 224 G~~~~e~~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----k~~~~ipvi~~G~i~~~ 297 (343)
T cd04734 224 GLSPDEALEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARI----KQAVDLPVFHAGRIRDP 297 (343)
T ss_pred CCCHHHHHHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHH----HHHcCCCEEeeCCCCCH
Confidence 689999999999999876 43 554 21 111 1 12322333 34678999998889999
Q ss_pred HHHHHHHHcCCccEEEec
Q 013681 317 NDVQKVMQENLASVVNIK 334 (438)
Q Consensus 317 ~d~~~ll~~~a~d~i~lk 334 (438)
++..++++.+.+|.|.+=
T Consensus 298 ~~~~~~l~~~~~D~V~~g 315 (343)
T cd04734 298 AEAEQALAAGHADMVGMT 315 (343)
T ss_pred HHHHHHHHcCCCCeeeec
Confidence 999999999889987763
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.044 Score=53.86 Aligned_cols=134 Identities=18% Similarity=0.197 Sum_probs=94.3
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-----------CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHH
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-----------NITADFDVLQAIHAVHPHCSFILDANEGYTSE 261 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-----------d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~ 261 (438)
..|+..++...+++++.+.++.+.+.|+..|-+.++. +.+.-.+.++++|+.. ++.+.+-.+..++.+
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~ 176 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLE 176 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHH
Confidence 3566677766788999888888888899999999873 1223345678888754 677888888889999
Q ss_pred HHHHHHHHhhhCCCCCceEecC---------------CCCC-------------ChhhHHHHHHhhcccc--CCeEEEcC
Q 013681 262 EAVEVLGKLNDMGVIPVLFEQP---------------VHRD-------------DWSGLHDVSNFARDTY--GISVVADE 311 (438)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~iEqP---------------l~~~-------------d~~~~a~L~~~~r~~~--~iPIa~dE 311 (438)
+..+.++.+.+.++. +|.=+ .... .++..++++ +.. ++||...=
T Consensus 177 ~~~~~a~~l~~~Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~----~~~~~~ipiia~G 250 (289)
T cd02810 177 DIVELAKAAERAGAD--GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLA----ARLQLDIPIIGVG 250 (289)
T ss_pred HHHHHHHHHHHcCCC--EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHH----HhcCCCCCEEEEC
Confidence 999999999988764 55421 1000 122223333 345 78998888
Q ss_pred CCCCHHHHHHHHHcCCccEEEec
Q 013681 312 SCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 312 sl~~~~d~~~ll~~~a~d~i~lk 334 (438)
-+.+.+++.+++..+ +|.+++=
T Consensus 251 GI~~~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 251 GIDSGEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred CCCCHHHHHHHHHcC-ccHheEc
Confidence 888999999999876 7776653
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.091 Score=52.58 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=95.9
Q ss_pred HhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCC----------------chHHHHHHHHHHhhCCCcE
Q 013681 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----------------ITADFDVLQAIHAVHPHCS 249 (438)
Q Consensus 186 Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d----------------~~~di~~l~aiR~~~~~~~ 249 (438)
++.-.....|+..++...+++++.+.++...+.||..|-+..|-+ ++.-.+.+++||+..+ +.
T Consensus 55 ~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~p 133 (319)
T TIGR00737 55 LLDIAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IP 133 (319)
T ss_pred HhhcCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CC
Confidence 333333456777788888999999999888889999999988731 2233456777777422 22
Q ss_pred EEEeCCCCCCH--HHHHHHHHHhhhCCCCCceEe-------cCCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHH
Q 013681 250 FILDANEGYTS--EEAVEVLGKLNDMGVIPVLFE-------QPVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (438)
Q Consensus 250 L~vDAN~~~s~--~~A~~~l~~L~~~~l~~~~iE-------qPl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~ 319 (438)
+.|-...+|+. .+..++++.|++.++. +|- +-.. +.+++..+++++ ..++||.+.=.+.+.+++
T Consensus 134 v~vKir~g~~~~~~~~~~~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~~----~~~ipvi~nGgI~~~~da 207 (319)
T TIGR00737 134 VTVKIRIGWDDAHINAVEAARIAEDAGAQ--AVTLHGRTRAQGYSGEANWDIIARVKQ----AVRIPVIGNGDIFSPEDA 207 (319)
T ss_pred EEEEEEcccCCCcchHHHHHHHHHHhCCC--EEEEEcccccccCCCchhHHHHHHHHH----cCCCcEEEeCCCCCHHHH
Confidence 33333334432 3467888888887753 331 1111 224666666654 678999999999999999
Q ss_pred HHHHHcCCccEEEecC
Q 013681 320 QKVMQENLASVVNIKL 335 (438)
Q Consensus 320 ~~ll~~~a~d~i~lk~ 335 (438)
.++++...+|.+++=-
T Consensus 208 ~~~l~~~gad~VmigR 223 (319)
T TIGR00737 208 KAMLETTGCDGVMIGR 223 (319)
T ss_pred HHHHHhhCCCEEEECh
Confidence 9999777799988743
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.15 Score=50.98 Aligned_cols=145 Identities=12% Similarity=0.191 Sum_probs=100.0
Q ss_pred HhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhC--C-
Q 013681 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH--P- 246 (438)
Q Consensus 186 Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~--~- 246 (438)
+|.-.....|+..++...+++++.+.++...+.||..|-+..|- +++.-.+.++++++.. |
T Consensus 47 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PV 126 (318)
T TIGR00742 47 ILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPV 126 (318)
T ss_pred HcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCe
Confidence 44433445677788888999999988888877899999998872 2344456778888742 4
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE--------ecCCC--------CCChhhHHHHHHhhcccc-CCeEEE
Q 013681 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF--------EQPVH--------RDDWSGLHDVSNFARDTY-GISVVA 309 (438)
Q Consensus 247 ~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i--------EqPl~--------~~d~~~~a~L~~~~r~~~-~iPIa~ 309 (438)
.+++|+-.+..=+.++++++++.+++.++. +| .|-.. +-+|+..+++++ .. .+||.+
T Consensus 127 svKiR~g~~~~~~~~~~~~~~~~l~~~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~----~~~~ipVi~ 200 (318)
T TIGR00742 127 TVKHRIGIDPLDSYEFLCDFVEIVSGKGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKK----DFPHLTIEI 200 (318)
T ss_pred EEEEecCCCCcchHHHHHHHHHHHHHcCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHH----hCCCCcEEE
Confidence 466666222111457788999999887763 44 23332 125666666664 34 799988
Q ss_pred cCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 310 DESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 310 dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.=.+.+.+|+.+.+. .+|.+++==..+
T Consensus 201 NGdI~s~~da~~~l~--g~dgVMigRgal 227 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS--HVDGVMVGREAY 227 (318)
T ss_pred ECCcCCHHHHHHHHh--CCCEEEECHHHH
Confidence 889999999999885 588888754333
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.15 Score=50.45 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=90.8
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcC-CcEEEEecC--------C----CchHHHHHHHHHHhhCCCcEEEEeCCCCCCH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLG-FSTLKLNVG--------R----NITADFDVLQAIHAVHPHCSFILDANEGYTS 260 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~G-f~~iKlKvG--------~----d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~ 260 (438)
.|+..++...++++..+.++++.+.| |..|-+.++ . +.+.-.+.+++||+.. ++.+.|--+. +.
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~ 168 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NV 168 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--Cc
Confidence 46667777778999998899988888 999999653 1 3445566788888854 5556665553 34
Q ss_pred HHHHHHHHHhhhCCCCCceEe---------------cCC-------------CCCChhhHHHHHHhhccccCCeEEEcCC
Q 013681 261 EEAVEVLGKLNDMGVIPVLFE---------------QPV-------------HRDDWSGLHDVSNFARDTYGISVVADES 312 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iE---------------qPl-------------~~~d~~~~a~L~~~~r~~~~iPIa~dEs 312 (438)
++..++++.+++.++. .|. +|. .+-.++..++++ +.+++||...=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~----~~~~ipvi~~GG 242 (301)
T PRK07259 169 TDIVEIAKAAEEAGAD--GLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVY----QAVDIPIIGMGG 242 (301)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHH----HhCCCCEEEECC
Confidence 5778888888876653 221 111 111233334444 357899999999
Q ss_pred CCCHHHHHHHHHcCCccEEEecC
Q 013681 313 CRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 313 l~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
+.+.+++.+++..+ +|.|++=-
T Consensus 243 I~~~~da~~~l~aG-Ad~V~igr 264 (301)
T PRK07259 243 ISSAEDAIEFIMAG-ASAVQVGT 264 (301)
T ss_pred CCCHHHHHHHHHcC-CCceeEcH
Confidence 99999999999887 68888643
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.22 Score=47.49 Aligned_cols=132 Identities=12% Similarity=0.122 Sum_probs=94.0
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhC-C-CcEEEEeC
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH-P-HCSFILDA 254 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~-~-~~~L~vDA 254 (438)
+.|+..++...+++++.+.++.. +.++..|-+..|- |++.-.+.++++++.. | .+++|+.
T Consensus 67 ~~~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~- 144 (231)
T TIGR00736 67 RALVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN- 144 (231)
T ss_pred cCCEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC-
Confidence 34666788888999998877775 6789999988762 4455556677777542 2 3455553
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEecCCCCC---ChhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD---DWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~---d~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
|+..+.+++++++++.+....-|.+=.+.. +|+..+++++ .. ++||.+--.+.+.+|+.++++. .+|.
T Consensus 145 ---~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~----~~~~ipIIgNGgI~s~eda~e~l~~-GAd~ 216 (231)
T TIGR00736 145 ---CIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE----EFNDKIIIGNNSIDDIESAKEMLKA-GADF 216 (231)
T ss_pred ---CCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH----hcCCCcEEEECCcCCHHHHHHHHHh-CCCe
Confidence 455667899999998886433566544332 5777777765 45 4999999999999999999985 5888
Q ss_pred EEec
Q 013681 331 VNIK 334 (438)
Q Consensus 331 i~lk 334 (438)
|++=
T Consensus 217 Vmvg 220 (231)
T TIGR00736 217 VSVA 220 (231)
T ss_pred EEEc
Confidence 8763
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.12 Score=52.72 Aligned_cols=122 Identities=11% Similarity=0.179 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC-cEEEEe-------C
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILD-------A 254 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~-~~L~vD-------A 254 (438)
.+.|+..++.||..+-|..+. +++ --++.|++||+ ++++ +-+|+- .
T Consensus 162 ~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~ 241 (362)
T PRK10605 162 RQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNV 241 (362)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccC
Confidence 345677788999999999762 111 13578899998 4665 445552 2
Q ss_pred CCCCCHHH-HHHHHHHhhhCCCCCceEecCCCC--CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 255 NEGYTSEE-AVEVLGKLNDMGVIPVLFEQPVHR--DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 255 N~~~s~~~-A~~~l~~L~~~~l~~~~iEqPl~~--~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
.++++.+| ++++++.|++.++. +|+=-... ....-...+++.+|+.+++||...-. .+++..+++++.+.+|.|
T Consensus 242 ~~G~~~~e~~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~V 318 (362)
T PRK10605 242 DNGPNEEADALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDAV 318 (362)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC--EEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCEE
Confidence 45689888 89999999987763 56522210 00011123334444568889877655 489999999999999986
Q ss_pred Ee
Q 013681 332 NI 333 (438)
Q Consensus 332 ~l 333 (438)
-+
T Consensus 319 ~~ 320 (362)
T PRK10605 319 AF 320 (362)
T ss_pred EE
Confidence 65
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.19 Score=51.30 Aligned_cols=125 Identities=19% Similarity=0.221 Sum_probs=82.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC--cEEEEeC----C-
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH--CSFILDA----N- 255 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~--~~L~vDA----N- 255 (438)
.+.++..++.||..+.|+-.. +++ --++.|++||+ .+++ +-+|+=+ +
T Consensus 152 ~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~ 231 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDG 231 (363)
T ss_pred HHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCC
Confidence 455677788999999999752 111 24678899998 4666 4555433 2
Q ss_pred CCCCHHHHHHHHHHhhhCC-CCC----ceEecCCCCCChh--hH-HHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 256 EGYTSEEAVEVLGKLNDMG-VIP----VLFEQPVHRDDWS--GL-HDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~-l~~----~~iEqPl~~~d~~--~~-a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
++|+.++++++++.|++.+ +.. .|-..+...-... ++ ..++..++....+|+.+--.+.+++..+++++.+.
T Consensus 232 ~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~ 311 (363)
T COG1902 232 GGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGR 311 (363)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 3789999999999999988 331 1222221111111 11 12232233467799988888999999999999988
Q ss_pred ccEEEe
Q 013681 328 ASVVNI 333 (438)
Q Consensus 328 ~d~i~l 333 (438)
+|.|-+
T Consensus 312 aDlVa~ 317 (363)
T COG1902 312 ADLVAM 317 (363)
T ss_pred CCEEEe
Confidence 887654
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.15 Score=57.24 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=83.9
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cc----hHHHHHHHHHHhh-CCC--cEEEEeC----CC
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NI----TADFDVLQAIHAV-HPH--CSFILDA----NE 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~----~~di~~l~aiR~~-~~~--~~L~vDA----N~ 256 (438)
.+.++..++.||..|-|..|. ++ .--++.+++||+. +++ +.+++-+ ++
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~ 633 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEG 633 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCC
Confidence 445667778999999999871 12 2235788999995 666 3334443 46
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEec--CCC-----CCChhhH-HHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQ--PVH-----RDDWSGL-HDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl~-----~~d~~~~-a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~ 328 (438)
+|+.++++++++.|++.++. +|+= +-. ......+ ..+++.+|+..++||..-=.+.++++.+++++.+.+
T Consensus 634 g~~~~~~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~ 711 (765)
T PRK08255 634 GNTPDDAVEIARAFKAAGAD--LIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRA 711 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCc--EEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCc
Confidence 89999999999999988764 5541 100 0000011 223334445688999888889999999999999999
Q ss_pred cEEEe
Q 013681 329 SVVNI 333 (438)
Q Consensus 329 d~i~l 333 (438)
|.|.+
T Consensus 712 D~v~~ 716 (765)
T PRK08255 712 DLCAL 716 (765)
T ss_pred ceeeE
Confidence 98776
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.19 Score=48.60 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=104.8
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC--CcEEEEeCCCC--------------
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG-------------- 257 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~--~~~L~vDAN~~-------------- 257 (438)
+|+-...++.+.+++. ++...|... +=+|...-++.+.++.+.+.++ .+.+.+|+++.
T Consensus 75 ~pv~~~GGi~s~~d~~----~~~~~Ga~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 75 IPLTVGGGIKSIEDVD----KLLRAGADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CCEEEECCCCCHHHHH----HHHHcCCCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeC
Confidence 5665666777887764 445667544 5667666677888888888764 58899997533
Q ss_pred C---CHHHHHHHHHHhhhCCCCCceEecCCCC------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc
Q 013681 258 Y---TSEEAVEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (438)
Q Consensus 258 ~---s~~~A~~~l~~L~~~~l~~~~iEqPl~~------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~ 328 (438)
| +..+..++++.+++.++. ..+=..+.. -|++.++++++ .+++||.+-=-+.+.+++.+++..+.+
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~-~iivt~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~~~~g~~ 223 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAG-EILLTSMDKDGTKSGYDLELTKAVSE----AVKIPVIASGGAGKPEHFYEAFTKGKA 223 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCC-EEEEeCcCcccCCCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCc
Confidence 2 234567888888888764 111112222 24666677764 578999888888999999999998889
Q ss_pred cEEEecCCcc-hHHHHHHHHHHHHHcCCeE
Q 013681 329 SVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 329 d~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (438)
+.+.+--... |-....++.+.++++|+++
T Consensus 224 dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 224 DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 9987755444 5223567778888888864
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.27 Score=50.18 Aligned_cols=119 Identities=21% Similarity=0.369 Sum_probs=78.1
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCCcE--EEEeC------
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPHCS--FILDA------ 254 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~~~--L~vDA------ 254 (438)
.+.++...+.||..|-|+.+. +++ --++.+++||+ ++++.. +|+-+
T Consensus 147 ~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~ 226 (361)
T cd04747 147 ARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDY 226 (361)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccccccc
Confidence 455667778999999999753 121 23578899999 577743 34432
Q ss_pred --CCCCCHHHHHHHHHHhhhCCCCCceEe-------cCCCCC-ChhhHHHHHHhhccccCCeEEEcCCC-----------
Q 013681 255 --NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVHRD-DWSGLHDVSNFARDTYGISVVADESC----------- 313 (438)
Q Consensus 255 --N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qPl~~~-d~~~~a~L~~~~r~~~~iPIa~dEsl----------- 313 (438)
.++.++++++++++.|++.++. +|+ +|...+ ++. +++.+++..++||..-=.+
T Consensus 227 ~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~----~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~ 300 (361)
T cd04747 227 TARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELN----LAGWTKKLTGLPTITVGSVGLDGDFIGAFA 300 (361)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchh----HHHHHHHHcCCCEEEECCcccccccccccc
Confidence 1257899999999999887753 453 232111 222 2222334678898776555
Q ss_pred -------CCHHHHHHHHHcCCccEEEe
Q 013681 314 -------RSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 314 -------~~~~d~~~ll~~~a~d~i~l 333 (438)
.++++.+++++.+.+|.|.+
T Consensus 301 ~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 301 GDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred cccccccCCHHHHHHHHHCCCCCeehh
Confidence 58889999999888888654
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.41 Score=47.19 Aligned_cols=137 Identities=19% Similarity=0.245 Sum_probs=89.2
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC------------CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR------------NITADFDVLQAIHAVHPHCSFILDANEGYTSE 261 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~------------d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~ 261 (438)
.|+..++...++++..+.++.+.+.||..|-+.++- +++.-.+.++++|+.. ++.+.+--+ .+.+
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~--~~~~ 166 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLT--PNVT 166 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeC--CCch
Confidence 456667766788888888888888899999997751 3344556788888853 344444333 2334
Q ss_pred HHHHHHHHhhhCCCC-CceE----------e--cCCC-------------CCChhhHHHHHHhhccccCCeEEEcCCCCC
Q 013681 262 EAVEVLGKLNDMGVI-PVLF----------E--QPVH-------------RDDWSGLHDVSNFARDTYGISVVADESCRS 315 (438)
Q Consensus 262 ~A~~~l~~L~~~~l~-~~~i----------E--qPl~-------------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~ 315 (438)
+..++++.+.+.++. +..+ + .|.. +-.++..++++ +.+++||...=.+.+
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~----~~~~ipii~~GGI~~ 242 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY----KAVEIPIIGVGGIAS 242 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH----HhcCCCEEEECCCCC
Confidence 677778877776642 0011 1 1211 11123334444 357899999989999
Q ss_pred HHHHHHHHHcCCccEEEecCCcc
Q 013681 316 LNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 316 ~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.+++.++++.+ +|.|++=-..+
T Consensus 243 ~~da~~~l~~G-Ad~V~igra~l 264 (296)
T cd04740 243 GEDALEFLMAG-ASAVQVGTANF 264 (296)
T ss_pred HHHHHHHHHcC-CCEEEEchhhh
Confidence 99999999987 69988755443
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.29 Score=49.42 Aligned_cols=118 Identities=13% Similarity=0.181 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC-cEEEEeCC------
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILDAN------ 255 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~-~~L~vDAN------ 255 (438)
.+.++...+.||..+.|..+. +++ --++.+++||+ ++++ +.+|+-+.
T Consensus 155 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~ 234 (338)
T cd02933 155 RQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDM 234 (338)
T ss_pred HHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCC
Confidence 455677778999999999763 111 23567899998 4653 55555443
Q ss_pred -CCCCHHHHHHHHHHhhhCCCCCceEec--CC-----CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 256 -EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PV-----HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl-----~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
.+.+.++++++++.|++.++. +|+= .. ...+++..++++ +.+++||..--.+. +++..++++.+.
T Consensus 235 ~~~~~~ee~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~-~~~a~~~l~~g~ 307 (338)
T cd02933 235 GDSDPEATFSYLAKELNKRGLA--YLHLVEPRVAGNPEDQPPDFLDFLR----KAFKGPLIAAGGYD-AESAEAALADGK 307 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCc--EEEEecCCCCCcccccchHHHHHHH----HHcCCCEEEECCCC-HHHHHHHHHcCC
Confidence 245889999999999987753 4542 11 112233333443 46789988777765 888999999998
Q ss_pred ccEEEe
Q 013681 328 ASVVNI 333 (438)
Q Consensus 328 ~d~i~l 333 (438)
+|.|.+
T Consensus 308 ~D~V~~ 313 (338)
T cd02933 308 ADLVAF 313 (338)
T ss_pred CCEEEe
Confidence 998765
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.24 Score=49.98 Aligned_cols=123 Identities=19% Similarity=0.265 Sum_probs=80.5
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHhhC--C-CcEEEEe--CCCCC
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAVH--P-HCSFILD--ANEGY 258 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~~~--~-~~~L~vD--AN~~~ 258 (438)
.+.|+...+.||..+.|..|. +++. -.+.+++||+.- + .+++..+ .++++
T Consensus 145 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~ 224 (337)
T PRK13523 145 KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGL 224 (337)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC
Confidence 345667778999999999872 1222 245778888843 2 2344432 35688
Q ss_pred CHHHHHHHHHHhhhCCCCCceEec------CCCCCChhh-HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQ------PVHRDDWSG-LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEq------Pl~~~d~~~-~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
+.++++++++.|++.++. ||+= |.+.....+ ...+++.+++..++||..-=.+.++++.+++++.+.+|.|
T Consensus 225 ~~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChH
Confidence 999999999999987753 5531 101011111 1223333445688998877788899999999999888885
Q ss_pred Ee
Q 013681 332 NI 333 (438)
Q Consensus 332 ~l 333 (438)
.+
T Consensus 303 ~~ 304 (337)
T PRK13523 303 FI 304 (337)
T ss_pred Hh
Confidence 43
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.76 Score=43.92 Aligned_cols=129 Identities=11% Similarity=0.183 Sum_probs=86.0
Q ss_pred eeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 013681 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDANEGY 258 (438)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~~~L~vDAN~~~ 258 (438)
|+..++...+++++.+.++...+ +...|-+..|- +++.-.+.++++|+. ++.+.|=-...|
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~ 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGV 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 66677777899999887777644 55888887771 244446677888874 344444444457
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCC--CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPV--HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl--~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
+ ++..++++.+++.++...-+.+-. ..-||+..+++ +.++||.+-=.+.+.+++.++++.+ +|.|++-
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i------~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiG 220 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI------STELFIIGNNSVTTIESAKEMFSYG-ADMVSVA 220 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh------cCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEc
Confidence 6 677888899988775311122211 12234443333 1579999999999999999999865 9998874
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.57 Score=46.34 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=96.8
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhc--CCcEEEEecCC------------CchHHHHHHHHHHhhCCCcEEEEeCCCCCC
Q 013681 194 LSTAITIPAVSPAEASELASKYCKL--GFSTLKLNVGR------------NITADFDVLQAIHAVHPHCSFILDANEGYT 259 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~--Gf~~iKlKvG~------------d~~~di~~l~aiR~~~~~~~L~vDAN~~~s 259 (438)
.|+..++...+++++.+.++.+.+. ++..|-+.+|- +++.-.+.++++|+.. ++.+.|.-+. +
T Consensus 91 ~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~--~ 167 (300)
T TIGR01037 91 TPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP--N 167 (300)
T ss_pred CcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC--C
Confidence 4556677667899998888887654 38999998872 3344466778888753 3455555553 4
Q ss_pred HHHHHHHHHHhhhCCCCCceEe---------------cCCCCC---------C----hhhHHHHHHhhccccCCeEEEcC
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFE---------------QPVHRD---------D----WSGLHDVSNFARDTYGISVVADE 311 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iE---------------qPl~~~---------d----~~~~a~L~~~~r~~~~iPIa~dE 311 (438)
.++..++++.+++.++. .|. +|.... . ++...++ ++..++||.+.=
T Consensus 168 ~~~~~~~a~~l~~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i----~~~~~ipvi~~G 241 (300)
T TIGR01037 168 VTDITEIAKAAEEAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDV----YKMVDIPIIGVG 241 (300)
T ss_pred hhhHHHHHHHHHHcCCC--EEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHH----HhcCCCCEEEEC
Confidence 46778888889887754 442 111000 0 1222233 346789999988
Q ss_pred CCCCHHHHHHHHHcCCccEEEecCCcc--h--HHH-HHHHHHHHHHcCC
Q 013681 312 SCRSLNDVQKVMQENLASVVNIKLAKF--G--VLG-TLQIIKATRKSGL 355 (438)
Q Consensus 312 sl~~~~d~~~ll~~~a~d~i~lk~~~~--G--i~~-~~~~~~~A~~~gi 355 (438)
.+.+.+++.+++..+ +|.+++=-..+ | +.. ..++.++.+++|.
T Consensus 242 GI~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 242 GITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred CCCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence 999999999999876 88888654333 3 222 2334555556654
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.25 Score=47.58 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEe-------cC-------CCchHHHHHHHHHHhh--C-CCcEE--EEeCCCC--CC
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLN-------VG-------RNITADFDVLQAIHAV--H-PHCSF--ILDANEG--YT 259 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlK-------vG-------~d~~~di~~l~aiR~~--~-~~~~L--~vDAN~~--~s 259 (438)
+.++++.+.+.++++.+.|...+|+. .| .+.++-+++++++++. . +++.| |.|+-.. .+
T Consensus 79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~ 158 (243)
T cd00377 79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEG 158 (243)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCC
Confidence 34577788888999999999999992 22 1567778899999884 3 45444 6787554 78
Q ss_pred HHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d 310 (438)
.++|++.+++..+.|-...|+|-|. +.+.++++++ ..+.|+..-
T Consensus 159 ~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~----~~~~Pl~~~ 202 (243)
T cd00377 159 LDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE----APDVPLNVN 202 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh----cCCCCEEEE
Confidence 9999999999999876656999887 5678888886 577888764
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.56 Score=48.01 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=80.1
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cc----hHHHHHHHHHHh-hCCC--cEEEEeCC-----
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NI----TADFDVLQAIHA-VHPH--CSFILDAN----- 255 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~----~~di~~l~aiR~-~~~~--~~L~vDAN----- 255 (438)
.+.|+...+.||..+-|..+. ++ +--++.+++||+ ++++ +.+|+-+.
T Consensus 153 ~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~ 232 (370)
T cd02929 153 VDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGP 232 (370)
T ss_pred HHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCC
Confidence 455677788999999999863 11 123578899998 4666 45555432
Q ss_pred -CCCCHHHHHHHHHHhhhCCCC-----CceEecC-CCCCC-hhh-HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 256 -EGYTSEEAVEVLGKLNDMGVI-----PVLFEQP-VHRDD-WSG-LHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~~l~-----~~~iEqP-l~~~d-~~~-~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
++++.++++++++.|++. +. .-+.+.. ..... .++ ...+++.+|+.+++||..-=.+.++++..++++.+
T Consensus 233 ~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g 311 (370)
T cd02929 233 GGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSG 311 (370)
T ss_pred CCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 237899999999999873 11 0011111 10000 011 12233333456899998877889999999999999
Q ss_pred CccEEEec
Q 013681 327 LASVVNIK 334 (438)
Q Consensus 327 a~d~i~lk 334 (438)
.+|.|.+=
T Consensus 312 ~~D~V~~g 319 (370)
T cd02929 312 ILDLIGAA 319 (370)
T ss_pred CCCeeeec
Confidence 99987653
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.85 Score=43.95 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=98.6
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC--CCcEEEEeCCC------------CCC
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH--PHCSFILDANE------------GYT 259 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~--~~~~L~vDAN~------------~~s 259 (438)
+|+....++.+.+++.+ +.+.|... +-+|...-.+.+.++.+.+.+ ..+.+.+|+.. +|.
T Consensus 75 ipv~~~GGi~s~~~~~~----~l~~Ga~~--Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~ 148 (253)
T PRK02083 75 IPLTVGGGIRSVEDARR----LLRAGADK--VSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR 148 (253)
T ss_pred CCEEeeCCCCCHHHHHH----HHHcCCCE--EEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence 56666667778777644 44567554 466765556778888888865 35778889653 121
Q ss_pred ---HHHHHHHHHHhhhCCCCCceEecCCC------CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 260 ---SEEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 260 ---~~~A~~~l~~L~~~~l~~~~iEqPl~------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
.....++++.+.+.++. ..+=.++. -.|++.++++++ .+++||...=-+.+.+|+.++++...++.
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~~~i~~~~~----~~~ipvia~GGv~s~~d~~~~~~~~G~~g 223 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDLELTRAVSD----AVNVPVIASGGAGNLEHFVEAFTEGGADA 223 (253)
T ss_pred eecCCCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhCCccE
Confidence 12345677777776653 22222322 235777777775 57899887778889999999987655777
Q ss_pred EEecCCcc-hHHHHHHHHHHHHHcCCeE
Q 013681 331 VNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 331 i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (438)
+.+--... |-....++.+.+++.|+.+
T Consensus 224 vivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 224 ALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred EeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 77654444 5333456677778888865
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.78 Score=46.63 Aligned_cols=117 Identities=15% Similarity=0.282 Sum_probs=75.8
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHh-hC----CCcE--EEEeC--
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VH----PHCS--FILDA-- 254 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~-~~----~~~~--L~vDA-- 254 (438)
.+.|+...+.||..|-|..+. +++. -.+.+++||+ ++ +++. +|+..
T Consensus 147 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~ 226 (353)
T cd04735 147 GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE 226 (353)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc
Confidence 455677778999999998741 1222 3467899998 46 5644 44433
Q ss_pred --CCCCCHHHHHHHHHHhhhCCCCCceEe-------cCCC---CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHH
Q 013681 255 --NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVH---RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (438)
Q Consensus 255 --N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qPl~---~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~l 322 (438)
.++.+.++++++++.|++.++. ||+ .+.. ...++..+.+++.. ..++||..-=.+.++++..++
T Consensus 227 ~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~--~~~iPVi~~Ggi~t~e~ae~~ 302 (353)
T cd04735 227 PEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQTIMELVKERI--AGRLPLIAVGSINTPDDALEA 302 (353)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHHHHHHHHHHh--CCCCCEEEECCCCCHHHHHHH
Confidence 4578899999999999998864 665 1111 11222333343311 137888877778889999898
Q ss_pred HHcCCccE
Q 013681 323 MQENLASV 330 (438)
Q Consensus 323 l~~~a~d~ 330 (438)
++.+ +|.
T Consensus 303 l~~g-aD~ 309 (353)
T cd04735 303 LETG-ADL 309 (353)
T ss_pred HHcC-CCh
Confidence 8873 665
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.41 Score=48.41 Aligned_cols=125 Identities=21% Similarity=0.365 Sum_probs=79.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC--cEEEEeCCC----
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH--CSFILDANE---- 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~--~~L~vDAN~---- 256 (438)
.+.|+..++.||..+-|..+. +++ --++.+++||+ ++++ +-+|+-+..
T Consensus 152 ~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~ 231 (341)
T PF00724_consen 152 AQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEG 231 (341)
T ss_dssp HHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTT
T ss_pred HHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCC
Confidence 345677788999999999863 111 13667899998 5776 467777754
Q ss_pred CCCHHHHHHHHHHhhhCCCCC------ce--EecCCC--CCChhh--HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHH
Q 013681 257 GYTSEEAVEVLGKLNDMGVIP------VL--FEQPVH--RDDWSG--LHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~------~~--iEqPl~--~~d~~~--~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~ 324 (438)
+++.++..++++.+++.++.. .+ ...|.. +.+... ...+++.+|+.+.+||.+--.+.+++...++++
T Consensus 232 g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~ 311 (341)
T PF00724_consen 232 GITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALE 311 (341)
T ss_dssp SHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHh
Confidence 456788866666666543210 01 122332 222111 113334444568899998888888888899999
Q ss_pred cCCccEEEe
Q 013681 325 ENLASVVNI 333 (438)
Q Consensus 325 ~~a~d~i~l 333 (438)
.+.+|.|-+
T Consensus 312 ~g~~DlV~~ 320 (341)
T PF00724_consen 312 EGKADLVAM 320 (341)
T ss_dssp TTSTSEEEE
T ss_pred cCCceEeec
Confidence 999999765
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.6 Score=40.84 Aligned_cols=94 Identities=10% Similarity=0.161 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCCh-hhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~-~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+.+++++.++.|.+.+++ .+|=++...+. +..+++++ +. .+.|..+ ++.+.++++++++.+ .+++ +-|.
T Consensus 18 ~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~----~~~~~~vGAG-TVl~~~~a~~a~~aG-A~Fi-vsP~ 88 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRK----EVPDALIGAG-TVLNPEQLRQAVDAG-AQFI-VSPG 88 (204)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHH----HCCCCEEEEE-eCCCHHHHHHHHHcC-CCEE-ECCC
Confidence 789999999999999986 89999976553 44666664 33 3555555 888999999999986 6665 3443
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
. ..++++.|+++|++++++.+.-|-
T Consensus 89 ~-----~~~v~~~~~~~~i~~iPG~~TptE 113 (204)
T TIGR01182 89 L-----TPELAKHAQDHGIPIIPGVATPSE 113 (204)
T ss_pred C-----CHHHHHHHHHcCCcEECCCCCHHH
Confidence 3 358899999999999999986554
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=92.84 E-value=3 Score=39.76 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=93.4
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC--CcEEEEeCC-----------CCC--
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDAN-----------EGY-- 258 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~--~~~L~vDAN-----------~~~-- 258 (438)
+|+....++.+.+++.+ +.+.|...+ -+|..+-++.+.+..+.+.++ .+.+.+|+. .+|
T Consensus 72 ~pv~~~GGI~s~~d~~~----~l~~G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~ 145 (243)
T cd04731 72 IPLTVGGGIRSLEDARR----LLRAGADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRK 145 (243)
T ss_pred CCEEEeCCCCCHHHHHH----HHHcCCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCce
Confidence 56667777778877643 445676654 556555556677777766543 488889975 123
Q ss_pred -CHHHHHHHHHHhhhCCCCCceEe------c-CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 259 -TSEEAVEVLGKLNDMGVIPVLFE------Q-PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 259 -s~~~A~~~l~~L~~~~l~~~~iE------q-Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
+..++.++++.+.+.++. +|. + .....+++..+++++ .+++||.+.=.+.+++++.++++...+|.
T Consensus 146 ~~~~~~~~~~~~l~~~G~d--~i~v~~i~~~g~~~g~~~~~i~~i~~----~~~~pvia~GGi~~~~di~~~l~~~g~dg 219 (243)
T cd04731 146 PTGLDAVEWAKEVEELGAG--EILLTSMDRDGTKKGYDLELIRAVSS----AVNIPVIASGGAGKPEHFVEAFEEGGADA 219 (243)
T ss_pred ecCCCHHHHHHHHHHCCCC--EEEEeccCCCCCCCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHhCCCCE
Confidence 245567888888877764 221 1 122235777777765 57899988888889999999998766888
Q ss_pred EEecCCcc-h-HHHHHHHHHHHHH
Q 013681 331 VNIKLAKF-G-VLGTLQIIKATRK 352 (438)
Q Consensus 331 i~lk~~~~-G-i~~~~~~~~~A~~ 352 (438)
+.+--... | + ...++.+.+++
T Consensus 220 v~vg~al~~~~~-~~~~~~~~~~~ 242 (243)
T cd04731 220 ALAASIFHFGEY-TIAELKEYLAE 242 (243)
T ss_pred EEEeHHHHcCCC-CHHHHHHHHhh
Confidence 77744433 5 3 23444444443
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=13 Score=39.56 Aligned_cols=177 Identities=10% Similarity=0.118 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEEeCCCC----CC--HHHH-HHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDANEG----YT--SEEA-VEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~vDAN~~----~s--~~~A-~~~l~ 268 (438)
+.+++...++.+-+.||..+-+--|..+ +++.++|+++|+..++..|..=..|. |. +++. ..+++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 6788999999999999999999766533 46899999999988887776444322 33 3444 45777
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCC---eEEE-cCCCCCHHHH----HHHHHcCCccEEEecCCcch-
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI---SVVA-DESCRSLNDV----QKVMQENLASVVNIKLAKFG- 339 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~i---PIa~-dEsl~~~~d~----~~ll~~~a~d~i~lk~~~~G- 339 (438)
...+.++.+..|=.|+. |.+.+....+.+++.... -|.- .-...+.+.+ +++.+.+ +|.|.+|=+- |
T Consensus 105 ~a~~~Gidi~RIfd~ln--dv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-ad~I~IkDta-Gl 180 (499)
T PRK12330 105 KSAENGMDVFRVFDALN--DPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-ADSICIKDMA-AL 180 (499)
T ss_pred HHHHcCCCEEEEEecCC--hHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCc-cC
Confidence 77777877667888886 455555444333322221 2211 1234566654 4555554 7888887655 5
Q ss_pred --HHHHHHHHHHHHHc---CCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 340 --VLGTLQIIKATRKS---GLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 340 --i~~~~~~~~~A~~~---gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
...+.+++...++. ++++.+|+-..+|++++- .+++.-.....+|
T Consensus 181 l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An--~laAieAGad~vD 230 (499)
T PRK12330 181 LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVS--LMKAIEAGVDVVD 230 (499)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHH--HHHHHHcCCCEEE
Confidence 44566666665554 699999987555555443 3333322344554
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=92.37 E-value=5.6 Score=38.14 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc------hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI------TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP 277 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~------~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~ 277 (438)
+.++..+.++.+.+.|+..|-+-.+... +.+.+.++.+++.+++.++.+.+... .+.++.+.+.++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------~~~i~~a~~~g~~- 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------EKGIERALEAGVD- 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------hhhHHHHHhCCcC-
Confidence 7788888899998999998888777655 77888999999988777776666443 3345555555543
Q ss_pred ceEecCCCCC--------------ChhhHHHHHHhhccccCCeEEEcC-CC----CCHHHH----HHHHHcCCccEEEec
Q 013681 278 VLFEQPVHRD--------------DWSGLHDVSNFARDTYGISVVADE-SC----RSLNDV----QKVMQENLASVVNIK 334 (438)
Q Consensus 278 ~~iEqPl~~~--------------d~~~~a~L~~~~r~~~~iPIa~dE-sl----~~~~d~----~~ll~~~a~d~i~lk 334 (438)
+|-=++... +++...+..+.++ +.++.+...= .. .+++.+ +.+.+ ..++.|.+.
T Consensus 90 -~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~g~~~i~l~ 166 (265)
T cd03174 90 -EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEE-AGADEISLK 166 (265)
T ss_pred -EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHH-cCCCEEEec
Confidence 333333322 2333322222222 3466665442 22 333333 33444 458888876
Q ss_pred CCcch-H--HHHHHHHHHHHH-cC-CeEEEccCCchhHH
Q 013681 335 LAKFG-V--LGTLQIIKATRK-SG-LHLMIDGMIETRLA 368 (438)
Q Consensus 335 ~~~~G-i--~~~~~~~~~A~~-~g-i~~~~~s~~es~ig 368 (438)
.+. | + ....+++...++ .+ +++-+|+-..-+++
T Consensus 167 Dt~-G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla 204 (265)
T cd03174 167 DTV-GLATPEEVAELVKALREALPDVPLGLHTHNTLGLA 204 (265)
T ss_pred hhc-CCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChH
Confidence 653 5 3 345566555444 34 77777775444443
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.9 Score=40.06 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=87.9
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEEeCC------CCCC--HHHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDAN------EGYT--SEEAV 264 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~vDAN------~~~s--~~~A~ 264 (438)
+|+....++.+.+++ +++++.|.. |+-+|...-+|.+.++.+-+.+ ..+.+.+|.. .+|. ..+..
T Consensus 76 ~pv~vgGGirs~edv----~~~l~~Ga~--kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~ 149 (241)
T PRK14024 76 VKVELSGGIRDDESL----EAALATGCA--RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLW 149 (241)
T ss_pred CCEEEcCCCCCHHHH----HHHHHCCCC--EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHH
Confidence 444444566677664 456677876 5566765556777777776644 4566777773 2453 33467
Q ss_pred HHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc--CCccEEEecCC
Q 013681 265 EVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE--NLASVVNIKLA 336 (438)
Q Consensus 265 ~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~--~a~d~i~lk~~ 336 (438)
++++.+++.++. ..+ ++-....||+.++++++ .+++||...=.+.+.+|+.++.+. ..++.+.+--.
T Consensus 150 ~~~~~l~~~G~~-~iiv~~~~~~g~~~G~d~~~i~~i~~----~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 150 EVLERLDSAGCS-RYVVTDVTKDGTLTGPNLELLREVCA----RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred HHHHHHHhcCCC-EEEEEeecCCCCccCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 788888887754 122 55555557888888885 578999888888999999888642 35777766443
Q ss_pred c
Q 013681 337 K 337 (438)
Q Consensus 337 ~ 337 (438)
.
T Consensus 225 ~ 225 (241)
T PRK14024 225 L 225 (241)
T ss_pred H
Confidence 3
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=2.9 Score=40.49 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=83.3
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC--CcEEEEeCCCC-----------C--
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG-----------Y-- 258 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~--~~~L~vDAN~~-----------~-- 258 (438)
+|+....++.+.+++ +++.+.|+..+ -+|...-++.+.++.+.+.++ .+.+.+|+..+ |
T Consensus 75 ~pv~~gGGi~s~~d~----~~l~~~G~~~v--vigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~ 148 (258)
T PRK01033 75 MPLCYGGGIKTLEQA----KKIFSLGVEKV--SINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTK 148 (258)
T ss_pred CCEEECCCCCCHHHH----HHHHHCCCCEE--EEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCee
Confidence 344344455666654 44556787654 456544456677887777553 47888997543 2
Q ss_pred -CHHHHHHHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 259 -TSEEAVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 259 -s~~~A~~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
+.....+++++++++++. ..+ ++...--|++.++++++ .+++||.+.=-+.+.+|+.++++...++.+
T Consensus 149 ~~~~~~~e~~~~~~~~g~~-~ii~~~i~~~G~~~G~d~~~i~~~~~----~~~ipvIasGGv~s~eD~~~l~~~~GvdgV 223 (258)
T PRK01033 149 KLKKDPLELAKEYEALGAG-EILLNSIDRDGTMKGYDLELLKSFRN----ALKIPLIALGGAGSLDDIVEAILNLGADAA 223 (258)
T ss_pred cCCCCHHHHHHHHHHcCCC-EEEEEccCCCCCcCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHHCCCCEE
Confidence 122346677777776653 222 34444447888888875 588999888889999999999854557766
Q ss_pred Ee
Q 013681 332 NI 333 (438)
Q Consensus 332 ~l 333 (438)
.+
T Consensus 224 iv 225 (258)
T PRK01033 224 AA 225 (258)
T ss_pred EE
Confidence 54
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=91.97 E-value=4.4 Score=38.22 Aligned_cols=130 Identities=15% Similarity=0.245 Sum_probs=82.5
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC-CcEEEEeCC------CCC---CHHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP-HCSFILDAN------EGY---TSEEA 263 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~-~~~L~vDAN------~~~---s~~~A 263 (438)
+|+....++.+.+++. ++.+.|.. ++=+|...-++.+.++.+.+.++ .+.+.+|.. .+| +....
T Consensus 75 ~pv~~~GGI~~~ed~~----~~~~~Ga~--~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~ 148 (233)
T PRK00748 75 IPVQVGGGIRSLETVE----ALLDAGVS--RVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTA 148 (233)
T ss_pred CCEEEcCCcCCHHHHH----HHHHcCCC--EEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCH
Confidence 4555555667777653 44566755 34567644455556666666544 477888873 234 12233
Q ss_pred HHHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 264 VEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
.++++.+++.+.. ..+ ++...-.|++.++++++ .+++||...=-+.+.+|++++++.+.++.+.+=
T Consensus 149 ~e~~~~~~~~g~~-~ii~~~~~~~g~~~G~d~~~i~~l~~----~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 149 EDLAKRFEDAGVK-AIIYTDISRDGTLSGPNVEATRELAA----AVPIPVIASGGVSSLDDIKALKGLGAVEGVIVG 220 (233)
T ss_pred HHHHHHHHhcCCC-EEEEeeecCcCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEE
Confidence 4566666665543 122 23333346788888875 578999888889999999999998778877653
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=8.5 Score=36.27 Aligned_cols=142 Identities=13% Similarity=0.212 Sum_probs=100.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCC-cEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPH-CSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~-~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
-..++++..+.++.+.+.|++++.+-... ..-.+.++++++.+++ -++.|=|..-.+++++.+..+ .+. .|
T Consensus 20 r~~~~~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~----aGA--~F 91 (213)
T PRK06552 20 RGESKEEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL----AGA--QF 91 (213)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH----cCC--CE
Confidence 34588999999999999999999999864 3456788888887754 368899999999998766554 343 26
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-chHHHHHHHHHHHHHc-CCeE
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKS-GLHL 357 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~Gi~~~~~~~~~A~~~-gi~~ 357 (438)
|=-|.-. .++.+.|. +.++|+.-| +.++.++.+.++.+ +|++.+=|.. .|+.....+ ..-. ++++
T Consensus 92 ivsP~~~---~~v~~~~~----~~~i~~iPG--~~T~~E~~~A~~~G-ad~vklFPa~~~G~~~ik~l---~~~~p~ip~ 158 (213)
T PRK06552 92 IVSPSFN---RETAKICN----LYQIPYLPG--CMTVTEIVTALEAG-SEIVKLFPGSTLGPSFIKAI---KGPLPQVNV 158 (213)
T ss_pred EECCCCC---HHHHHHHH----HcCCCEECC--cCCHHHHHHHHHcC-CCEEEECCcccCCHHHHHHH---hhhCCCCEE
Confidence 6667653 34444554 578998886 66889999888764 8999996644 364443333 2333 4888
Q ss_pred EEccCC
Q 013681 358 MIDGMI 363 (438)
Q Consensus 358 ~~~s~~ 363 (438)
++.+-+
T Consensus 159 ~atGGI 164 (213)
T PRK06552 159 MVTGGV 164 (213)
T ss_pred EEECCC
Confidence 877644
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=91.58 E-value=4.5 Score=38.28 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=82.2
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC-C-cEEEEeCCCC------------C-
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP-H-CSFILDANEG------------Y- 258 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~-~-~~L~vDAN~~------------~- 258 (438)
+|+....+..+.+++.+ +.+.|+..+ -+|...-++.+.++.+.+.++ + +.+.+|+... |
T Consensus 75 ~pv~~~ggi~~~~d~~~----~~~~G~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~ 148 (232)
T TIGR03572 75 MPLTVGGGIRSLEDAKK----LLSLGADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGR 148 (232)
T ss_pred CCEEEECCCCCHHHHHH----HHHcCCCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCc
Confidence 45445555667766543 446687654 556544566677888777643 3 6678886542 2
Q ss_pred --CHHHHHHHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 259 --TSEEAVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 259 --s~~~A~~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
+..+++++++.+++.++. ..+ +.-....+++.++++++ .+++||.+.=-+.+.+++.+++....++.
T Consensus 149 ~~~~~~~~~~~~~~~~~G~d-~i~i~~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~l~~~gadg 223 (232)
T TIGR03572 149 RATGRDPVEWAREAEQLGAG-EILLNSIDRDGTMKGYDLELIKTVSD----AVSIPVIALGGAGSLDDLVEVALEAGASA 223 (232)
T ss_pred ccCCCCHHHHHHHHHHcCCC-EEEEeCCCccCCcCCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHHcCCCE
Confidence 234567888888877754 111 11122235777777775 57899988888889999998565556777
Q ss_pred EEe
Q 013681 331 VNI 333 (438)
Q Consensus 331 i~l 333 (438)
+.+
T Consensus 224 V~v 226 (232)
T TIGR03572 224 VAA 226 (232)
T ss_pred EEE
Confidence 665
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.55 E-value=9.7 Score=35.63 Aligned_cols=143 Identities=14% Similarity=0.213 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (438)
-..++++..+.++.+.+.|++++.+..-. ....+.++.+++.+++ .+.|=|..-.+.+++...++.=.+ ++
T Consensus 17 r~~~~~~~~~~~~a~~~gGi~~iEvt~~~--~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a~~aGA~------fi 87 (206)
T PRK09140 17 RGITPDEALAHVGALIEAGFRAIEIPLNS--PDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRLADAGGR------LI 87 (206)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHHHHcCCC------EE
Confidence 34588899999999999999999998754 2345588888887764 366777777888876554443233 44
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-chHHHHHHHHHHHHHcCCeEEE
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~Gi~~~~~~~~~A~~~gi~~~~ 359 (438)
=-|.. |. ...+.+. ..++++..+ +.++.++.+..+.+ +||+.+=|+. +|+....++..... ..++++.
T Consensus 88 vsp~~--~~-~v~~~~~----~~~~~~~~G--~~t~~E~~~A~~~G-ad~vk~Fpa~~~G~~~l~~l~~~~~-~~ipvva 156 (206)
T PRK09140 88 VTPNT--DP-EVIRRAV----ALGMVVMPG--VATPTEAFAALRAG-AQALKLFPASQLGPAGIKALRAVLP-PDVPVFA 156 (206)
T ss_pred ECCCC--CH-HHHHHHH----HCCCcEEcc--cCCHHHHHHHHHcC-CCEEEECCCCCCCHHHHHHHHhhcC-CCCeEEE
Confidence 44543 32 3333333 468888887 89999998888765 7999874433 46444444332221 2588887
Q ss_pred ccCC
Q 013681 360 DGMI 363 (438)
Q Consensus 360 ~s~~ 363 (438)
.+-+
T Consensus 157 iGGI 160 (206)
T PRK09140 157 VGGV 160 (206)
T ss_pred ECCC
Confidence 6533
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=8.5 Score=38.10 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=80.9
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEec-------C-------CCchHHHHHHHHHHhh--CCCcEE--EE
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G-------RNITADFDVLQAIHAV--HPHCSF--IL 252 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKv-------G-------~d~~~di~~l~aiR~~--~~~~~L--~v 252 (438)
++|+..-+ +.+++..+.+.++++.+.|-..+-|-= | .+.++=+++|+++++. .+++-| |-
T Consensus 78 ~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 157 (292)
T PRK11320 78 DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART 157 (292)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec
Confidence 45654433 345889998899999999998887732 2 1456667788888874 456544 67
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
|+-.....++|++.+++..+.|-...|+|-|- +.+.++++++ ..++|+..
T Consensus 158 Da~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~---~~~~i~~~~~----~~~~Pl~~ 207 (292)
T PRK11320 158 DALAVEGLDAAIERAQAYVEAGADMIFPEAMT---ELEMYRRFAD----AVKVPILA 207 (292)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEecCCC---CHHHHHHHHH----hcCCCEEE
Confidence 98766779999999999998876656998765 4778888886 46677744
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.17 E-value=2.5 Score=39.49 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+.+++++.++.|.+-+++ .||=++...+ .+.+++|++ +.+ +-|..+ ++.+.++++++++.+ .++++ -|.
T Consensus 14 ~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~----~~~~~~vGAG-TVl~~e~a~~ai~aG-A~Fiv-SP~ 84 (201)
T PRK06015 14 DVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAA----EVEEAIVGAG-TILNAKQFEDAAKAG-SRFIV-SPG 84 (201)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH----HCCCCEEeeE-eCcCHHHHHHHHHcC-CCEEE-CCC
Confidence 789999999999999986 8999997554 344566654 233 444444 888999999999986 56543 343
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCchhH
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (438)
. ..++++.|+++|+.++++.+.-|-+
T Consensus 85 ~-----~~~vi~~a~~~~i~~iPG~~TptEi 110 (201)
T PRK06015 85 T-----TQELLAAANDSDVPLLPGAATPSEV 110 (201)
T ss_pred C-----CHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 3 2678999999999999999875543
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=91.03 E-value=8.4 Score=38.00 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=80.2
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEec-------C-------CCchHHHHHHHHHHhh--CCCcEE--EE
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G-------RNITADFDVLQAIHAV--HPHCSF--IL 252 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKv-------G-------~d~~~di~~l~aiR~~--~~~~~L--~v 252 (438)
.+|+..-+ +.+++..+.+.++++.+.|-..+-|.= | .+.++=+++|+++++. .+++-| |-
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART 152 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART 152 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc
Confidence 45655443 445788888889999999998887732 2 1456667889988884 345444 67
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
|+-.....++|++.+++..+.|-...|+|-|- +.+.++++++ +.++|+.
T Consensus 153 Da~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~---~~e~i~~~~~----~i~~Pl~ 201 (285)
T TIGR02317 153 DARAVEGLDAAIERAKAYVEAGADMIFPEALT---SLEEFRQFAK----AVKVPLL 201 (285)
T ss_pred CcccccCHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHH----hcCCCEE
Confidence 99877789999999999998876656998765 4667788876 4667774
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=90.92 E-value=11 Score=37.46 Aligned_cols=151 Identities=12% Similarity=0.136 Sum_probs=94.8
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEec-------C----C---CchHHHHHHHHHHhh--CCCcEE--EE
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV-------G----R---NITADFDVLQAIHAV--HPHCSF--IL 252 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKv-------G----~---d~~~di~~l~aiR~~--~~~~~L--~v 252 (438)
.+|+..-+ +.+++..+.+.++++.+.|...|-|.= | . +.++=+++|+++++. .+++-| |.
T Consensus 77 ~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART 156 (294)
T TIGR02319 77 DVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART 156 (294)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 46655443 344555577788999999998887732 2 1 455667788888874 345444 78
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE--cC----CCCCHHHHHHHHHcC
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA--DE----SCRSLNDVQKVMQEN 326 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~--dE----sl~~~~d~~~ll~~~ 326 (438)
|+......++|++.+++..+.|-...|+|-|. +.++++++++ ..+.|+.. -+ ...+. .++-+.
T Consensus 157 Da~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~---~~~ei~~~~~----~~~~P~~~nv~~~~~~p~~s~---~eL~~l- 225 (294)
T TIGR02319 157 DARESFGLDEAIRRSREYVAAGADCIFLEAML---DVEEMKRVRD----EIDAPLLANMVEGGKTPWLTT---KELESI- 225 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCEEEecCCC---CHHHHHHHHH----hcCCCeeEEEEecCCCCCCCH---HHHHHc-
Confidence 99877889999999999998876656998754 4677888886 35556522 11 12333 333333
Q ss_pred CccEEEecCCcch--HHHHHHHHHHHHHcC
Q 013681 327 LASVVNIKLAKFG--VLGTLQIIKATRKSG 354 (438)
Q Consensus 327 a~d~i~lk~~~~G--i~~~~~~~~~A~~~g 354 (438)
.++.+..-+.... .....+.++.-.+.|
T Consensus 226 G~~~v~~~~~~~~aa~~a~~~~~~~l~~~G 255 (294)
T TIGR02319 226 GYNLAIYPLSGWMAAASVLRKLFTELREAG 255 (294)
T ss_pred CCcEEEEcHHHHHHHHHHHHHHHHHHHHcC
Confidence 4666666554442 344444444444444
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=90.86 E-value=15 Score=36.39 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=77.0
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEecC----------------CCchHHHHHHHHHHhh--CCCcEE--
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVG----------------RNITADFDVLQAIHAV--HPHCSF-- 250 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKvG----------------~d~~~di~~l~aiR~~--~~~~~L-- 250 (438)
++|+..-+ +.+++..+.+-++++.+.|...+-|.=+ .+.++=.++|+++++. .+++-|
T Consensus 75 ~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~A 154 (290)
T TIGR02321 75 SIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIA 154 (290)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 45654433 3345556777889999999988877322 1344557788888874 456544
Q ss_pred EEeCC-CCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE
Q 013681 251 ILDAN-EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 251 ~vDAN-~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
|-|+- .....++|++.+++..+.|-...|+|-|+. +.++++++++.+ ..++|+..
T Consensus 155 RTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~--~~~ei~~~~~~~--~~p~pv~~ 210 (290)
T TIGR02321 155 RVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQK--TPDEILAFVKSW--PGKVPLVL 210 (290)
T ss_pred EeccccccCCHHHHHHHHHHHHHcCCCEEEecCCCC--CHHHHHHHHHhc--CCCCCeEE
Confidence 67886 456789999999999988866568877653 467888888632 23467754
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.48 E-value=14 Score=38.96 Aligned_cols=176 Identities=14% Similarity=0.195 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHH-HHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDANE----GYT--SEE-AVEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~vDAN~----~~s--~~~-A~~~l~ 268 (438)
+.++|...++.+-+.||..+-+--|..+ +.+.++|+++|+..|+..|..=..| +|. +++ ...+++
T Consensus 33 ~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~ 112 (468)
T PRK12581 33 SIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFIS 112 (468)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHH
Confidence 6788888899998899999999877533 5789999999998776655422222 344 344 345777
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCe----E-EEcCCCCCHHH----HHHHHHcCCccEEEecCCcch
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----V-VADESCRSLND----VQKVMQENLASVVNIKLAKFG 339 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP----I-a~dEsl~~~~d----~~~ll~~~a~d~i~lk~~~~G 339 (438)
...+.++++..|=+++. |.+.+....+.+++ .+.- | ..+...++.+- ++++.+. .+|.|.+|=+- |
T Consensus 113 ~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~-~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~-Gad~I~IkDta-G 187 (468)
T PRK12581 113 LSAQNGIDVFRIFDALN--DPRNIQQALRAVKK-TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEM-GADSICIKDMA-G 187 (468)
T ss_pred HHHHCCCCEEEEcccCC--CHHHHHHHHHHHHH-cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHc-CCCEEEECCCC-C
Confidence 77888887667777775 45555554444433 2221 2 12223333333 2555555 47888887655 5
Q ss_pred ---HHHHHHHHHHHHH-cCCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 340 ---VLGTLQIIKATRK-SGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 340 ---i~~~~~~~~~A~~-~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
...+.+++...++ .++++.+|+-..++++.+ ..+++.-.....+|
T Consensus 188 ~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~A--n~laAieAGad~vD 236 (468)
T PRK12581 188 ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQM--TYLAAVEAGADRID 236 (468)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHH--HHHHHHHcCCCEEE
Confidence 3445555555544 468888888655555444 33433322334444
|
|
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=90.46 E-value=2.2 Score=42.50 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=53.6
Q ss_pred hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 290 ~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
+.+.++++ ++++|+.+|=... ..-+....+. +++-+.+.|..+| -....++++.|+++|+++-++-.++|
T Consensus 64 ~A~~~Ik~----~~~vPLVaDiHf~-~rla~~~~~~-g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~GS 134 (361)
T COG0821 64 EALKEIKQ----RLNVPLVADIHFD-YRLALEAAEC-GVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAGS 134 (361)
T ss_pred HHHHHHHH----hCCCCEEEEeecc-HHHHHHhhhc-CcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccCc
Confidence 34445543 7899999997765 4444555554 4899999999999 67799999999999999998865543
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=90.25 E-value=4 Score=43.90 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=99.7
Q ss_pred eeeeeeeCCCCHHH-------HHHHHHHHhhcCCcEEEEecCC----Cc--------hHHHHHHHHHHhhC-CC-cEEEE
Q 013681 194 LSTAITIPAVSPAE-------ASELASKYCKLGFSTLKLNVGR----NI--------TADFDVLQAIHAVH-PH-CSFIL 252 (438)
Q Consensus 194 ip~~~~i~~~~~~~-------~~~~~~~~~~~Gf~~iKlKvG~----d~--------~~di~~l~aiR~~~-~~-~~L~v 252 (438)
+|+....++.+.++ ..+.++++++.|...+- +|. ++ ..+-+.++.+-+.+ .+ +.+.|
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~--i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsi 392 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKIS--IGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSI 392 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEE--EChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEE
Confidence 56555555556544 25778888999966444 443 21 12457888888865 55 88999
Q ss_pred eCCCCC-------------------------------------CHHHHHHHHHHhhhCCCCCceEecCCCCC------Ch
Q 013681 253 DANEGY-------------------------------------TSEEAVEVLGKLNDMGVIPVLFEQPVHRD------DW 289 (438)
Q Consensus 253 DAN~~~-------------------------------------s~~~A~~~l~~L~~~~l~~~~iEqPl~~~------d~ 289 (438)
|+...+ +--+++++++++++++.. +.+=-=+..| |+
T Consensus 393 D~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag-eil~t~id~DGt~~G~d~ 471 (538)
T PLN02617 393 DPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG-EILLNCIDCDGQGKGFDI 471 (538)
T ss_pred ecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC-EEEEeeccccccccCcCH
Confidence 986432 123578899999998864 3444444433 56
Q ss_pred hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc-hHHHHHHHHHHHHHcCCeE
Q 013681 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 290 ~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (438)
+.++.++. .+++||.+-=-.-+++|+.+++....++.+..--..+ +-....++-+..++.|+++
T Consensus 472 ~l~~~v~~----~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 472 ELVKLVSD----AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred HHHHHHHh----hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 77777775 6899998877888999999999865555544332222 3222344445556677764
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=90.22 E-value=7.2 Score=37.03 Aligned_cols=131 Identities=17% Similarity=0.304 Sum_probs=81.1
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-C-CcEEEEeCC------CCCCHH---H
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-P-HCSFILDAN------EGYTSE---E 262 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~-~~~L~vDAN------~~~s~~---~ 262 (438)
+|+....++.+.+++ +.+.+.|.. ++-+|.....+.+.++.+++.+ + .+-+.+|+. .+|..+ +
T Consensus 77 ~~l~v~GGi~~~~~~----~~~~~~Ga~--~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~ 150 (241)
T PRK13585 77 VPVQLGGGIRSAEDA----ASLLDLGVD--RVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYT 150 (241)
T ss_pred CcEEEcCCcCCHHHH----HHHHHcCCC--EEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCC
Confidence 343344456677665 344567876 4566764455667888888864 3 466788875 344321 3
Q ss_pred HHHHHHHhhhCCCCCce---E--ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 263 AVEVLGKLNDMGVIPVL---F--EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~---i--EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
..++++.+.+.++.... + +.....-+++.++++++ .+++||...=-+.+.+++.++.+.+ ++.+.+--
T Consensus 151 ~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~----~~~iPvia~GGI~~~~di~~~~~~G-a~gv~vgs 223 (241)
T PRK13585 151 PVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVD----SVDIPVIASGGVTTLDDLRALKEAG-AAGVVVGS 223 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEEH
Confidence 35566666666643111 2 22223346777888875 5789998888889999999877654 66666543
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.22 E-value=7.4 Score=37.25 Aligned_cols=134 Identities=15% Similarity=0.260 Sum_probs=89.9
Q ss_pred eeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEEeCCC------CCCHH---HHH
Q 013681 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANE------GYTSE---EAV 264 (438)
Q Consensus 195 p~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~vDAN~------~~s~~---~A~ 264 (438)
|+-...++.|.+. ++++++.|...+-+ |.-.-+|-++++.+.+.+ ..+.+.+|++. +|... ++.
T Consensus 77 ~vQvGGGIRs~~~----v~~ll~~G~~rVii--Gt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~ 150 (241)
T COG0106 77 PVQVGGGIRSLED----VEALLDAGVARVII--GTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELE 150 (241)
T ss_pred CEEeeCCcCCHHH----HHHHHHCCCCEEEE--ecceecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHH
Confidence 3333445556554 56677889766544 433356778888888865 56889999986 46422 456
Q ss_pred HHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc-CCccEEEecCCc
Q 013681 265 EVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-NLASVVNIKLAK 337 (438)
Q Consensus 265 ~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~-~a~d~i~lk~~~ 337 (438)
++++++++.++. .+| |=-+.--|++.+.+|++ .+.+|+-.-=-+.+.+|++++-+. +...+|.=+.-.
T Consensus 151 ~l~~~~~~~g~~-~ii~TdI~~DGtl~G~n~~l~~~l~~----~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy 225 (241)
T COG0106 151 ELAKRLEEVGLA-HILYTDISRDGTLSGPNVDLVKELAE----AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALY 225 (241)
T ss_pred HHHHHHHhcCCC-eEEEEecccccccCCCCHHHHHHHHH----HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHh
Confidence 777888877653 233 34444447889999997 589998777788899999988877 444444445444
Q ss_pred ch
Q 013681 338 FG 339 (438)
Q Consensus 338 ~G 339 (438)
.|
T Consensus 226 ~g 227 (241)
T COG0106 226 EG 227 (241)
T ss_pred cC
Confidence 56
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=2.4 Score=39.96 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
-++++|++.++.|.+.+++ .||=++...+ .+..++|++. -..+-|..| +..+.++++..++.+ .+++..-
T Consensus 24 ~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~---~p~~~IGAG-TVl~~~~a~~a~~aG-A~FivsP-- 94 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKE---VPEALIGAG-TVLNPEQLAQAIEAG-AQFIVSP-- 94 (212)
T ss_pred CCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHH---CCCCEEEEe-eccCHHHHHHHHHcC-CCEEECC--
Confidence 3689999999999999986 8999987554 3445555541 223555555 777889999999986 6665433
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
|+.. ++++.|++++++++++.+.-+
T Consensus 95 --~~~~--~vi~~a~~~~i~~iPG~~Tpt 119 (212)
T PRK05718 95 --GLTP--PLLKAAQEGPIPLIPGVSTPS 119 (212)
T ss_pred --CCCH--HHHHHHHHcCCCEeCCCCCHH
Confidence 3333 788899999999999997533
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=90.07 E-value=7.3 Score=40.21 Aligned_cols=122 Identities=12% Similarity=0.153 Sum_probs=71.2
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC-cEEEEeC----C--
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILDA----N-- 255 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~-~~L~vDA----N-- 255 (438)
.+.|+..++.||..+-|+.+. +++ -=++.|++||+ ++++ +-+|+-+ +
T Consensus 168 ~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~ 247 (391)
T PLN02411 168 RQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDA 247 (391)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCC
Confidence 455677788999999999752 111 13578899998 4665 4455543 1
Q ss_pred -CCCCHHHHHHHHHHhhhC------CCCCceEecCC------------CCCChhhHHHHHHhhccccCCeEEEcCCCCCH
Q 013681 256 -EGYTSEEAVEVLGKLNDM------GVIPVLFEQPV------------HRDDWSGLHDVSNFARDTYGISVVADESCRSL 316 (438)
Q Consensus 256 -~~~s~~~A~~~l~~L~~~------~l~~~~iEqPl------------~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~ 316 (438)
..-+.++++++.+.|+.. ++ .+|+==. .......+..+++.+|+..++||..-=.+ +.
T Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~g~~v--d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~ 324 (391)
T PLN02411 248 TDSDPLNLGLAVVERLNKLQLQNGSKL--AYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TR 324 (391)
T ss_pred CCCcchhhHHHHHHHHHHHHhhcCCCe--EEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-CH
Confidence 122356677777776642 12 2332111 00000012223334445678888776666 56
Q ss_pred HHHHHHHHcCCccEEEe
Q 013681 317 NDVQKVMQENLASVVNI 333 (438)
Q Consensus 317 ~d~~~ll~~~a~d~i~l 333 (438)
+...++++.+.+|+|-+
T Consensus 325 ~~a~~~l~~g~aDlV~~ 341 (391)
T PLN02411 325 ELGMQAVQQGDADLVSY 341 (391)
T ss_pred HHHHHHHHcCCCCEEEE
Confidence 77888998888888654
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=4.5 Score=38.40 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+.++|.+.++.|.+-++. .||=++...+ .+.+++|++..+++.+ +-|..+ ++.+.++++.+++.+ .++++ -|.
T Consensus 25 ~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aG-A~FiV-sP~ 99 (222)
T PRK07114 25 DVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLG-ANFIV-TPL 99 (222)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcC-CCEEE-CCC
Confidence 789999999999999986 8999997543 4556666532222222 434333 889999999999886 66544 333
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCchhH
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (438)
. ..++++.|+++|++++++.+.-|-+
T Consensus 100 ~-----~~~v~~~~~~~~i~~iPG~~TpsEi 125 (222)
T PRK07114 100 F-----NPDIAKVCNRRKVPYSPGCGSLSEI 125 (222)
T ss_pred C-----CHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 3 2578899999999999999875543
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=89.95 E-value=6.5 Score=37.07 Aligned_cols=129 Identities=16% Similarity=0.268 Sum_probs=83.3
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-C-CcEEEEeCCC------CC---CHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-P-HCSFILDANE------GY---TSEE 262 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~-~~~L~vDAN~------~~---s~~~ 262 (438)
+|+-...++.+++++ +++++.|... +=+|...-.|.+.++.+.+.+ . .+.+.+|... +| +..+
T Consensus 74 ~pv~~~GgI~~~e~~----~~~~~~Gad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~ 147 (234)
T cd04732 74 IPVQVGGGIRSLEDI----ERLLDLGVSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVS 147 (234)
T ss_pred CCEEEeCCcCCHHHH----HHHHHcCCCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCC
Confidence 454455556676654 4455678554 456765556777788887754 3 5777788643 12 2334
Q ss_pred HHHHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 263 AVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
..++++.+++.+.. .++ ++.....+++.++++++ .+++||...--+.+.+++.++++. .++.+.+=
T Consensus 148 ~~~~~~~~~~~ga~-~iii~~~~~~g~~~g~~~~~i~~i~~----~~~ipvi~~GGi~~~~di~~~~~~-Ga~gv~vg 219 (234)
T cd04732 148 LEELAKRFEELGVK-AIIYTDISRDGTLSGPNFELYKELAA----ATGIPVIASGGVSSLDDIKALKEL-GVAGVIVG 219 (234)
T ss_pred HHHHHHHHHHcCCC-EEEEEeecCCCccCCCCHHHHHHHHH----hcCCCEEEecCCCCHHHHHHHHHC-CCCEEEEe
Confidence 55677777776543 222 22223346778888875 578999998899999999999886 57776653
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=4 Score=38.49 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhcccc----CCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTY----GISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~----~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
+.++|++.++.|.+-+++ .+|=+++..+ .+.+++|++ +. .+-|..| ++.+.+++++.++.+ .++++
T Consensus 23 ~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~----~~~~~p~~~vGaG-TV~~~~~~~~a~~aG-A~Fiv- 93 (213)
T PRK06552 23 SKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVE----LYKDDPEVLIGAG-TVLDAVTARLAILAG-AQFIV- 93 (213)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHH----HcCCCCCeEEeee-eCCCHHHHHHHHHcC-CCEEE-
Confidence 789999999999999986 8999997554 445666764 33 2445444 889999999999986 66554
Q ss_pred cCCcchHHHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 334 KLAKFGVLGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 334 k~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
-|+.. .++++.|+++|++++++.+..+-
T Consensus 94 sP~~~-----~~v~~~~~~~~i~~iPG~~T~~E 121 (213)
T PRK06552 94 SPSFN-----RETAKICNLYQIPYLPGCMTVTE 121 (213)
T ss_pred CCCCC-----HHHHHHHHHcCCCEECCcCCHHH
Confidence 44442 57788999999999999986554
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=30 Score=37.73 Aligned_cols=163 Identities=14% Similarity=0.209 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCC--------chHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHHHH-HHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEAV-EVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d--------~~~di~~l~aiR~~~~~~~L~vDAN~----~~s--~~~A~-~~l~ 268 (438)
..++|...++.+-+.||..+-+--|.. -+.+.++|+.+|+..|+..|.+=.-| +|. +++.+ .+++
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~ 103 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK 103 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence 567888888888889999999988852 26789999999998888777543321 232 45554 4778
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE----EcCCCCCHHHH----HHHHHcCCccEEEecCCcch-
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV----ADESCRSLNDV----QKVMQENLASVVNIKLAKFG- 339 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa----~dEsl~~~~d~----~~ll~~~a~d~i~lk~~~~G- 339 (438)
...+.|+.+..|=+++. |.+.+..-.+.+++.-..-.+ ..-..++++.+ +++.+.+ +|.|.+|=+- |
T Consensus 104 ~a~~~Gidv~Rifd~ln--d~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G-ad~I~IkDta-G~ 179 (596)
T PRK14042 104 LAVNNGVDVFRVFDALN--DARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG-CDSIAIKDMA-GL 179 (596)
T ss_pred HHHHcCCCEEEEcccCc--chHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCcc-cC
Confidence 88888877666666664 344443322222222221111 13346677654 4455544 7888887655 5
Q ss_pred H--HHHHHHHHHHH-HcCCeEEEccCCchhHHHH
Q 013681 340 V--LGTLQIIKATR-KSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 340 i--~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~ 370 (438)
+ ..+.+++...+ +.++++.+|+-...+++.+
T Consensus 180 l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~a 213 (596)
T PRK14042 180 LTPTVTVELYAGLKQATGLPVHLHSHSTSGLASI 213 (596)
T ss_pred CCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHH
Confidence 3 34555555444 4589999998765665544
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.59 E-value=5.1 Score=37.59 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCCh-hhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~-~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
++++|+...++|-+-++. -||=|++..+. +..+.+++ ..+ +-|.+| ++.+.++++++.+.+ .+ +.+-|+
T Consensus 23 ~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~----~~p~~lIGAG-TVL~~~q~~~a~~aG-a~-fiVsP~ 93 (211)
T COG0800 23 DVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAK----EFPEALIGAG-TVLNPEQARQAIAAG-AQ-FIVSPG 93 (211)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHH----hCcccEEccc-cccCHHHHHHHHHcC-CC-EEECCC
Confidence 689999999999999986 89999987664 55666765 333 444444 788999999999987 44 344454
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
.. .++++.|..+|++++++.+.-|
T Consensus 94 ~~-----~ev~~~a~~~~ip~~PG~~Tpt 117 (211)
T COG0800 94 LN-----PEVAKAANRYGIPYIPGVATPT 117 (211)
T ss_pred CC-----HHHHHHHHhCCCcccCCCCCHH
Confidence 42 6889999999999999998643
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=89.03 E-value=20 Score=33.58 Aligned_cols=141 Identities=13% Similarity=0.184 Sum_probs=101.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (438)
-..++++..+.++.+.+.|++++.+-... ..-.+.++.+++.+|+ +.|=|..-.+++++.+..+ .+. .||
T Consensus 15 r~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~~----aGA--~Fi 84 (204)
T TIGR01182 15 RIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAVD----AGA--QFI 84 (204)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHHH----cCC--CEE
Confidence 34588999999999999999999998854 4456678888888885 7788888899998766655 343 367
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-ch-HHHHHHHHHHHHHcCCeEE
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~G-i~~~~~~~~~A~~~gi~~~ 358 (438)
=-|.- -.+..+.|+ +.++|..-| +.++.++...++.+ ++++-+=|.- .| ..-.+.+..-- -+++++
T Consensus 85 vsP~~---~~~v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vKlFPA~~~GG~~yikal~~pl--p~i~~~ 152 (204)
T TIGR01182 85 VSPGL---TPELAKHAQ----DHGIPIIPG--VATPSEIMLALELG-ITALKLFPAEVSGGVKMLKALAGPF--PQVRFC 152 (204)
T ss_pred ECCCC---CHHHHHHHH----HcCCcEECC--CCCHHHHHHHHHCC-CCEEEECCchhcCCHHHHHHHhccC--CCCcEE
Confidence 55654 234455554 578888875 77899999999886 7888888865 45 44443333322 478899
Q ss_pred EccCC
Q 013681 359 IDGMI 363 (438)
Q Consensus 359 ~~s~~ 363 (438)
+++-.
T Consensus 153 ptGGV 157 (204)
T TIGR01182 153 PTGGI 157 (204)
T ss_pred ecCCC
Confidence 88754
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=88.82 E-value=4.7 Score=37.51 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCCh-hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~-~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
+.++|.+.+++|.+-+++ .+|=+++..+. +.++.+++. .-.+-|..+ ++.+.++++++++.+ .+++.- |..
T Consensus 18 ~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~---~p~~~vGAG-TV~~~e~a~~a~~aG-A~FivS-P~~ 89 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKE---FPDLLVGAG-TVLTAEQAEAAIAAG-AQFIVS-PGF 89 (196)
T ss_dssp SGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHH---HTTSEEEEE-S--SHHHHHHHHHHT--SEEEE-SS-
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHH---CCCCeeEEE-eccCHHHHHHHHHcC-CCEEEC-CCC
Confidence 578999999999999986 89999986553 444555542 234555544 888999999999987 555433 322
Q ss_pred chHHHHHHHHHHHHHcCCeEEEccCCchhH
Q 013681 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (438)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (438)
..++++.|+++|++++++.+.-|-+
T Consensus 90 -----~~~v~~~~~~~~i~~iPG~~TptEi 114 (196)
T PF01081_consen 90 -----DPEVIEYAREYGIPYIPGVMTPTEI 114 (196)
T ss_dssp ------HHHHHHHHHHTSEEEEEESSHHHH
T ss_pred -----CHHHHHHHHHcCCcccCCcCCHHHH
Confidence 3678999999999999999875543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=88.67 E-value=16 Score=36.03 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEe--c--------C-------CCchHHHHHHHHHHhh--CCCcEE--EEeCC-CCCCH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLN--V--------G-------RNITADFDVLQAIHAV--HPHCSF--ILDAN-EGYTS 260 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlK--v--------G-------~d~~~di~~l~aiR~~--~~~~~L--~vDAN-~~~s~ 260 (438)
.++..+.+.++++.+.|...+-+. + | .+.++=.++++++++. .+++.| |-|+- .....
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 688899999999999999998881 1 1 1455667778888774 456544 67875 35679
Q ss_pred HHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccc-cCCeEEE
Q 013681 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT-YGISVVA 309 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~-~~iPIa~ 309 (438)
++|++.+++..+.|....|+|-+. .+.++++++++.++.. -++|+..
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHHhhhhCCCCCEEE
Confidence 999999999999886656888422 3467777777643211 1457654
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.16 E-value=11 Score=35.86 Aligned_cols=128 Identities=15% Similarity=0.168 Sum_probs=84.0
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEEeCCCC------CC---HHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANEG------YT---SEEA 263 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~vDAN~~------~s---~~~A 263 (438)
+|+....++.+.+++ +++.+.|...+ =+|.-.-+|.+.++.+.+.+ ..+-+.+|+... |. .-+.
T Consensus 77 ~pi~vGGGIrs~e~v----~~~l~~Ga~kv--vigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~ 150 (234)
T PRK13587 77 KDIEVGGGIRTKSQI----MDYFAAGINYC--IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNL 150 (234)
T ss_pred CeEEEcCCcCCHHHH----HHHHHCCCCEE--EECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCH
Confidence 454444566677664 55667786554 56765567888999998876 468889998433 42 1223
Q ss_pred HHHHHHhhhCCCCCceEecCCCC------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 264 VEVLGKLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqPl~~------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.++++.++++++. ..|=-.+.. .|++.+.++++ .+++||-..=-+.+.+|+.++++.+ ++.+.+
T Consensus 151 ~~~~~~~~~~g~~-~ii~tdi~~dGt~~G~~~~li~~l~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIPLG-GIIYTDIAKDGKMSGPNFELTGQLVK----ATTIPVIASGGIRHQQDIQRLASLN-VHAAII 220 (234)
T ss_pred HHHHHHHHHcCCC-EEEEecccCcCCCCccCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 5677777776653 333333332 25666777765 5789998888889999999998764 555554
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=7.2 Score=37.47 Aligned_cols=131 Identities=21% Similarity=0.262 Sum_probs=84.2
Q ss_pred eeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCC------CCCH---HHHHHHHH
Q 013681 198 ITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANE------GYTS---EEAVEVLG 268 (438)
Q Consensus 198 ~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~------~~s~---~~A~~~l~ 268 (438)
...++.+.+++ +++.+.|... +=+|.-.-+|.+.++.+.+.+.++.+.+|+.. +|.. -+..++++
T Consensus 78 vGGGIrs~e~~----~~~l~~Ga~r--vvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~ 151 (241)
T PRK14114 78 IGGGIRSLDYA----EKLRKLGYRR--QIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLK 151 (241)
T ss_pred EecCCCCHHHH----HHHHHCCCCE--EEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHH
Confidence 34455666654 5567788764 45675444566778888444567899999843 3532 23567788
Q ss_pred HhhhCCCCCceEecCCCC------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc-----CCccEEEecCCc
Q 013681 269 KLNDMGVIPVLFEQPVHR------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-----NLASVVNIKLAK 337 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~-----~a~d~i~lk~~~ 337 (438)
+++++++. ..|=--+.. -|++.++++++ .+++||.+.=-+.+.+|+.++.+. +.++.+.+=-+.
T Consensus 152 ~~~~~g~~-~ii~tdI~rdGt~~G~d~el~~~l~~----~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 152 RLKEYGLE-EIVHTEIEKDGTLQEHDFSLTRKIAI----EAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred HHHhcCCC-EEEEEeechhhcCCCcCHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHH
Confidence 88877753 334333332 36778888875 578999888888999999988875 226665554333
Q ss_pred c-h
Q 013681 338 F-G 339 (438)
Q Consensus 338 ~-G 339 (438)
. |
T Consensus 227 ~~g 229 (241)
T PRK14114 227 LEG 229 (241)
T ss_pred HCC
Confidence 3 5
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.99 E-value=17 Score=35.94 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=83.9
Q ss_pred eeeeeeeCCC-CHHHHHHHHHHHhhcCCcEEEEecCC---------------CchHHHHHHHHHHhhC--C-CcEEEEeC
Q 013681 194 LSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGR---------------NITADFDVLQAIHAVH--P-HCSFILDA 254 (438)
Q Consensus 194 ip~~~~i~~~-~~~~~~~~~~~~~~~Gf~~iKlKvG~---------------d~~~di~~l~aiR~~~--~-~~~L~vDA 254 (438)
.|+..++... +++++.+.++++.+.|+..|-+.++- +.+.-.+.++++|+.. | -++|+.|
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~- 178 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN- 178 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC-
Confidence 4555565554 88998888888766799999998872 1233344567777632 3 3444432
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceE----------------ecCCC-----------------CCChhhHHHHHHhhcc
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLF----------------EQPVH-----------------RDDWSGLHDVSNFARD 301 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~i----------------EqPl~-----------------~~d~~~~a~L~~~~r~ 301 (438)
.++..++++.+.+.+.. .| +.|.. +-.++..+++++
T Consensus 179 -----~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~---- 247 (299)
T cd02940 179 -----ITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIAR---- 247 (299)
T ss_pred -----chhHHHHHHHHHHcCCC--EEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHH----
Confidence 23556777777776643 22 22321 001444455543
Q ss_pred cc--CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 302 TY--GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 302 ~~--~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.. .+||...=-+.+.+|+.+++..+ ++.+|+=-..+
T Consensus 248 ~~~~~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta~~ 285 (299)
T cd02940 248 APEPGLPISGIGGIESWEDAAEFLLLG-ASVVQVCTAVM 285 (299)
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHHcC-CChheEceeec
Confidence 56 79999999999999999999864 78888765443
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.92 E-value=16 Score=36.84 Aligned_cols=152 Identities=23% Similarity=0.261 Sum_probs=103.5
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhh-C-C-CcEEEEe
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV-H-P-HCSFILD 253 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~-~-~-~~~L~vD 253 (438)
.-|+-..++.+|++.+.+.++-....+ +.|-+..|- +++---+.|+++++. . | .++||+=
T Consensus 73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~ 151 (358)
T KOG2335|consen 73 DRPLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF 151 (358)
T ss_pred CCceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 345557788899999977766554455 777777762 122233456777763 2 3 3455543
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCceE-------ecC---CCCCChhhHHHHHHhhccccC-CeEEEcCCCCCHHHHHHH
Q 013681 254 ANEGYTSEEAVEVLGKLNDMGVIPVLF-------EQP---VHRDDWSGLHDVSNFARDTYG-ISVVADESCRSLNDVQKV 322 (438)
Q Consensus 254 AN~~~s~~~A~~~l~~L~~~~l~~~~i-------EqP---l~~~d~~~~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~l 322 (438)
=+.++.+++++.+++.+.. |+ ||= ..+-||+.++.+.+ ..+ +||.+.-.+.++.|+.++
T Consensus 152 ----~d~~kTvd~ak~~e~aG~~--~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNGnI~~~~d~~~~ 221 (358)
T KOG2335|consen 152 ----VDLEKTVDYAKMLEDAGVS--LLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANGNILSLEDVERC 221 (358)
T ss_pred ----CcHHHHHHHHHHHHhCCCc--EEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeCCcCcHHHHHHH
Confidence 3577888899999987753 44 333 45668999999876 455 999999999999999999
Q ss_pred HHcCCccEEEec------CCcc-----hH--H-HHHHHHHHHHHcCC
Q 013681 323 MQENLASVVNIK------LAKF-----GV--L-GTLQIIKATRKSGL 355 (438)
Q Consensus 323 l~~~a~d~i~lk------~~~~-----Gi--~-~~~~~~~~A~~~gi 355 (438)
++.-.+|.|..- |..+ +. . =..++..+|++++-
T Consensus 222 ~~~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 222 LKYTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred HHHhCCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 996667777642 2211 21 1 25788899999883
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.75 E-value=24 Score=32.97 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (438)
..++++..+.++.+.+.|++++.+-... ..-.+.++.+++.+|+ +.|=|..-.+.+++.+..+ .+. .||=
T Consensus 12 ~~~~~~a~~ia~al~~gGi~~iEit~~t--p~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~ai~----aGA--~Fiv 81 (201)
T PRK06015 12 IDDVEHAVPLARALAAGGLPAIEITLRT--PAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDAAK----AGS--RFIV 81 (201)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHHHH----cCC--CEEE
Confidence 4588999999999999999999998864 3456678888887875 7788888899998766554 343 2677
Q ss_pred cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC-cch-HHHHHHHHHHHHHcCCeEEE
Q 013681 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA-KFG-VLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 282 qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~-~~G-i~~~~~~~~~A~~~gi~~~~ 359 (438)
-|.-. .++.+.|+ +.++|..-| +.|+.++...++.+ ++++-+=|. .+| ..-.+.+..-- -++++++
T Consensus 82 SP~~~---~~vi~~a~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vK~FPa~~~GG~~yikal~~pl--p~~~l~p 149 (201)
T PRK06015 82 SPGTT---QELLAAAN----DSDVPLLPG--AATPSEVMALREEG-YTVLKFFPAEQAGGAAFLKALSSPL--AGTFFCP 149 (201)
T ss_pred CCCCC---HHHHHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECCchhhCCHHHHHHHHhhC--CCCcEEe
Confidence 77653 33444454 578998876 67899999999886 688888885 444 44433332222 3789998
Q ss_pred ccCC
Q 013681 360 DGMI 363 (438)
Q Consensus 360 ~s~~ 363 (438)
++-.
T Consensus 150 tGGV 153 (201)
T PRK06015 150 TGGI 153 (201)
T ss_pred cCCC
Confidence 8654
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=87.61 E-value=45 Score=36.48 Aligned_cols=164 Identities=15% Similarity=0.230 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCC--------chHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHHH-HHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEA-VEVL 267 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d--------~~~di~~l~aiR~~~~~~~L~vDAN~----~~s--~~~A-~~~l 267 (438)
.+.+++.+.+..+.+.||..+-+--|.. -+++.++++.+|+..|+..+..=..+ +|+ +++. ..++
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v 102 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFV 102 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHH
Confidence 3678888889999999999999964532 24688999999998888887765443 343 3444 3566
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc-----CCCCCHHHH----HHHHHcCCccEEEecCCcc
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD-----ESCRSLNDV----QKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d-----Esl~~~~d~----~~ll~~~a~d~i~lk~~~~ 338 (438)
++..+.++....|=.|+. |...+....+.+++ .+.-+... ...++++.+ +++.+. .+|.|.++=+.
T Consensus 103 ~~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak~-~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~-Gad~I~i~Dt~- 177 (592)
T PRK09282 103 EKAAENGIDIFRIFDALN--DVRNMEVAIKAAKK-AGAHVQGTISYTTSPVHTIEKYVELAKELEEM-GCDSICIKDMA- 177 (592)
T ss_pred HHHHHCCCCEEEEEEecC--hHHHHHHHHHHHHH-cCCEEEEEEEeccCCCCCHHHHHHHHHHHHHc-CCCEEEECCcC-
Confidence 777777766445666664 44555544433332 34434322 223444443 455555 47888887665
Q ss_pred h---HHHHHHHHHHHH-HcCCeEEEccCCchhHHHHH
Q 013681 339 G---VLGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 339 G---i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (438)
| ...+.+++...+ +.++++.+|+-..++++.+-
T Consensus 178 G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An 214 (592)
T PRK09282 178 GLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMT 214 (592)
T ss_pred CCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHH
Confidence 4 445666655544 45888888887666655543
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=87.35 E-value=9.8 Score=38.20 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=79.5
Q ss_pred eeeeeeeCCCC-------HHHHHHHHHHHhhcCCcEEEEecCC----------CchHHHHHHHHHHhhCC----CcEEEE
Q 013681 194 LSTAITIPAVS-------PAEASELASKYCKLGFSTLKLNVGR----------NITADFDVLQAIHAVHP----HCSFIL 252 (438)
Q Consensus 194 ip~~~~i~~~~-------~~~~~~~~~~~~~~Gf~~iKlKvG~----------d~~~di~~l~aiR~~~~----~~~L~v 252 (438)
+|+..++...+ .++..+.+++. ..+...|-+.++- +.+.-.+.++++|+... ++.+.|
T Consensus 129 ~plivsi~g~~~~~~~~~~~d~~~~~~~~-~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~v 207 (327)
T cd04738 129 GPLGVNIGKNKDTPLEDAVEDYVIGVRKL-GPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLV 207 (327)
T ss_pred CeEEEEEeCCCCCcccccHHHHHHHHHHH-HhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEE
Confidence 45555554433 45565555554 3346788887752 23444567788887432 334443
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEe--c----------CCCCC-------------ChhhHHHHHHhhcccc--CC
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFE--Q----------PVHRD-------------DWSGLHDVSNFARDTY--GI 305 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iE--q----------Pl~~~-------------d~~~~a~L~~~~r~~~--~i 305 (438)
=-...++.++..++++.+++.++. +|. - |.... .++..+++++ .. .+
T Consensus 208 Kl~~~~~~~~~~~ia~~l~~aGad--~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~----~~~~~i 281 (327)
T cd04738 208 KIAPDLSDEELEDIADVALEHGVD--GIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYK----LTGGKI 281 (327)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCc--EEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHH----HhCCCC
Confidence 334446777888899999887764 443 1 11110 0233333433 44 68
Q ss_pred eEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 306 SVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 306 PIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
||.+-=-+.+.+|+.+++..+ +|.+++=
T Consensus 282 pIi~~GGI~t~~da~e~l~aG-Ad~V~vg 309 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAG-ASLVQLY 309 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcC-CCHHhcc
Confidence 998888889999999998865 7777664
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=87.11 E-value=5.5 Score=39.89 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhCCCCCceEecCCCC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqPl~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.+..++-+++|++.+-. .+==-++. ++-+.+.+++ +.+++|+.+|=.+.- .-....++. .+|-+.+.|..+
T Consensus 33 v~atv~QI~~L~~aGce--iVRvavp~~~~A~al~~I~----~~~~iPlVADIHFd~-~lAl~a~~~-g~dkiRINPGNi 104 (346)
T TIGR00612 33 IDSTVAQIRALEEAGCD--IVRVTVPDRESAAAFEAIK----EGTNVPLVADIHFDY-RLAALAMAK-GVAKVRINPGNI 104 (346)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHH----hCCCCCEEEeeCCCc-HHHHHHHHh-ccCeEEECCCCC
Confidence 34445555556555432 22222221 1123334444 378999999976542 223344443 599999999999
Q ss_pred h-HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 339 G-VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 339 G-i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
| -....++++.|+++|+++-++...
T Consensus 105 g~~e~v~~vv~~ak~~~ipIRIGVN~ 130 (346)
T TIGR00612 105 GFRERVRDVVEKARDHGKAMRIGVNH 130 (346)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 9 888999999999999999987644
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.97 E-value=9.4 Score=36.97 Aligned_cols=101 Identities=18% Similarity=0.077 Sum_probs=70.9
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEec--------------CCCCCChhhHHHHHHhhccccCCeEE--EcCCCCCHHH
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQ--------------PVHRDDWSGLHDVSNFARDTYGISVV--ADESCRSLND 318 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEq--------------Pl~~~d~~~~a~L~~~~r~~~~iPIa--~dEsl~~~~d 318 (438)
|..|+.++.+++++.|.+.|+. .||= |...++++.++.+.+. ..+..++ ..-......+
T Consensus 16 ~~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~---~~~~~~~~~~~~~~~~~~~ 90 (263)
T cd07943 16 RHQFTLEQVRAIARALDAAGVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA---LKQAKLGVLLLPGIGTVDD 90 (263)
T ss_pred CeecCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHh---ccCCEEEEEecCCccCHHH
Confidence 3457899999999999999985 8887 5556677777777542 1234443 2333445788
Q ss_pred HHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEcc
Q 013681 319 VQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 319 ~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (438)
++++++. .++.+.+-....=+....+.++.|++.|+.+.+.-
T Consensus 91 i~~a~~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 91 LKMAADL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHHc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEE
Confidence 8888876 48888774333115678889999999999876553
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=52 Score=35.98 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCC--C------chHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHHHH-HHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGR--N------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEAV-EVL 267 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~--d------~~~di~~l~aiR~~~~~~~L~vDAN~----~~s--~~~A~-~~l 267 (438)
.+.+++...++.+-+.||..+-+--|. | -+++.++++.+|+..|+..|..=..| +|. +++++ .++
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v 103 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFV 103 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHH
Confidence 367888889999989999999996553 1 25789999999998888777543453 454 45554 567
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCe----EEE-cCCCCCHHHH----HHHHHcCCccEEEecCCcc
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----VVA-DESCRSLNDV----QKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP----Ia~-dEsl~~~~d~----~~ll~~~a~d~i~lk~~~~ 338 (438)
+...+.++.+..|=.++. |.+.+....+.+++ .+.- |.. +....+.+.+ +.+.+. .+|.|.++=+.
T Consensus 104 ~~a~~~Gid~~rifd~ln--d~~~~~~ai~~ak~-~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~-Gad~i~i~Dt~- 178 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMN--DPRNLETALKAVRK-VGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDM-GVDSLCIKDMA- 178 (593)
T ss_pred HHHHhcCCCEEEEeeeCC--cHHHHHHHHHHHHH-cCCeEEEEEEEeeCCccCHHHHHHHHHHHHHc-CCCEEEECCCC-
Confidence 777777766456667765 34444443333332 3432 332 2333444443 444444 47888887665
Q ss_pred h---HHHHHHHHHHH-HHcCCeEEEccCCchhHHHHH
Q 013681 339 G---VLGTLQIIKAT-RKSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 339 G---i~~~~~~~~~A-~~~gi~~~~~s~~es~ig~~a 371 (438)
| ...+.+++... ++.++++-+|+-..++++.+.
T Consensus 179 G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An 215 (593)
T PRK14040 179 GLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTAT 215 (593)
T ss_pred CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHH
Confidence 4 34455555444 345889999987666655543
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.81 E-value=10 Score=36.99 Aligned_cols=104 Identities=15% Similarity=0.192 Sum_probs=70.0
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEecCCCCC------------ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHH
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD------------DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~------------d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~l 322 (438)
|-.|+.++.+++++.|++.+++ +||==++.. +.+.++++.+..+.++.+-....-......++...
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHH
Confidence 4568999999999999999986 899876533 14556666542111233333434333456677666
Q ss_pred HHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEcc
Q 013681 323 MQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 323 l~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s 361 (438)
.+. .++.+.+-...--+..++++++.|+++|+.+.++-
T Consensus 92 ~~~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 92 SGS-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred hcC-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEE
Confidence 554 47876665433238889999999999999987763
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=86.11 E-value=7 Score=39.45 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhhCCCCCceEecCCCC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqPl~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.+..++-+++|++.+-. .+==-++. ++-+.+.+++ +++++|+.+|=.+ +..-....++. .+|.+.+.|..+
T Consensus 41 v~atv~Qi~~L~~aGce--iVRvav~~~~~a~al~~I~----~~~~iPlvADIHF-d~~lAl~a~~~-G~~~iRINPGNi 112 (360)
T PRK00366 41 VEATVAQIKRLARAGCE--IVRVAVPDMEAAAALPEIK----KQLPVPLVADIHF-DYRLALAAAEA-GADALRINPGNI 112 (360)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEccCCHHHHHhHHHHH----HcCCCCEEEecCC-CHHHHHHHHHh-CCCEEEECCCCC
Confidence 44445555556555532 22222221 1223344444 3789999999664 34444555554 489999999999
Q ss_pred h-HH-HHHHHHHHHHHcCCeEEEccCC
Q 013681 339 G-VL-GTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 339 G-i~-~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
| +. ...++++.|+++|+++-++...
T Consensus 113 g~~~~~v~~vv~~ak~~~ipIRIGvN~ 139 (360)
T PRK00366 113 GKRDERVREVVEAAKDYGIPIRIGVNA 139 (360)
T ss_pred CchHHHHHHHHHHHHHCCCCEEEecCC
Confidence 8 44 6899999999999999987654
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=85.90 E-value=50 Score=34.80 Aligned_cols=178 Identities=13% Similarity=0.169 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEEeC---C-CCCC--HHHH-HHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFILDA---N-EGYT--SEEA-VEVL 267 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~vDA---N-~~~s--~~~A-~~~l 267 (438)
-+.+++.+.++.+-+.||..|-+--|..+ +++.++++.+++..++..+..=+ | -+|. ++++ .+++
T Consensus 23 ~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v 102 (448)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFV 102 (448)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHH
Confidence 36788888899999999999999644322 34788999999987877775322 2 2453 4444 3566
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCe----E-EEcCCCCCHHHH----HHHHHcCCccEEEecCCc-
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS----V-VADESCRSLNDV----QKVMQENLASVVNIKLAK- 337 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iP----I-a~dEsl~~~~d~----~~ll~~~a~d~i~lk~~~- 337 (438)
++..+.++...-|=.++. |...+....+.+++ .+.- | ..+...++.+.+ +++.+.+ +|.|.++=+-
T Consensus 103 ~~A~~~Gvd~irif~~ln--d~~n~~~~v~~ak~-~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-ad~I~i~Dt~G 178 (448)
T PRK12331 103 QKSVENGIDIIRIFDALN--DVRNLETAVKATKK-AGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-ADSICIKDMAG 178 (448)
T ss_pred HHHHHCCCCEEEEEEecC--cHHHHHHHHHHHHH-cCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCC
Confidence 776676765344555554 33344443333332 3432 2 122334454443 5555554 7888886554
Q ss_pred ch-HHHHHHHHHHHH-HcCCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 338 FG-VLGTLQIIKATR-KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 338 ~G-i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
+. ...+.+++...+ +.++++.+|+-...+++++ ..+++.-....++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~A--N~laAieaGad~vD 227 (448)
T PRK12331 179 ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEM--TYLKAIEAGADIID 227 (448)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHH--HHHHHHHcCCCEEE
Confidence 22 445566655544 4589999988655555444 33433322344544
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=85.89 E-value=8.5 Score=36.91 Aligned_cols=136 Identities=9% Similarity=0.038 Sum_probs=92.3
Q ss_pred ceeeeeee--CCCC-HHHHHHHHHHHhhcCCcEEEEecC---------CCchHHHHHHHHHHhh--CCCcE--EEEeCCC
Q 013681 193 SLSTAITI--PAVS-PAEASELASKYCKLGFSTLKLNVG---------RNITADFDVLQAIHAV--HPHCS--FILDANE 256 (438)
Q Consensus 193 ~ip~~~~i--~~~~-~~~~~~~~~~~~~~Gf~~iKlKvG---------~d~~~di~~l~aiR~~--~~~~~--L~vDAN~ 256 (438)
.+|+..-+ +.++ +..+.+-++++.+.|...+-|.=. .+.++=+++|+++++. .+++- -|-|+-.
T Consensus 69 ~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~ 148 (238)
T PF13714_consen 69 SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFL 148 (238)
T ss_dssp SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHC
T ss_pred cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccc
Confidence 46655443 3344 999999999999999998887533 1567778899999884 35544 4788854
Q ss_pred --CCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 257 --GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 257 --~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
....++|++.+++..+.|....|+|-+.. .++++++++ ..++|+..-.. .+..++.++-+.+ +..+..-
T Consensus 149 ~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~---~~~i~~~~~----~~~~Pl~v~~~-~~~~~~~eL~~lG-v~~v~~~ 219 (238)
T PF13714_consen 149 RAEEGLDEAIERAKAYAEAGADMIFIPGLQS---EEEIERIVK----AVDGPLNVNPG-PGTLSAEELAELG-VKRVSYG 219 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SEEEETTSSS---HHHHHHHHH----HHSSEEEEETT-SSSS-HHHHHHTT-ESEEEET
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEEEcC-CCCCCHHHHHHCC-CcEEEEc
Confidence 67789999999999998876568888854 566788886 45788876553 3224556666654 7666665
Q ss_pred CCc
Q 013681 335 LAK 337 (438)
Q Consensus 335 ~~~ 337 (438)
++.
T Consensus 220 ~~~ 222 (238)
T PF13714_consen 220 NSL 222 (238)
T ss_dssp SHH
T ss_pred HHH
Confidence 533
|
... |
| >cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols | Back alignment and domain information |
|---|
Probab=85.87 E-value=34 Score=32.93 Aligned_cols=158 Identities=10% Similarity=0.085 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCc-hHHHHHHHHHHhhC--CCcEEEEe--CC----CCCCHHHHHHHHH-HhhhC
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNI-TADFDVLQAIHAVH--PHCSFILD--AN----EGYTSEEAVEVLG-KLNDM 273 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~-~~di~~l~aiR~~~--~~~~L~vD--AN----~~~s~~~A~~~l~-~L~~~ 273 (438)
+.++..+.++..++.|++.|-.--.-.. ..+...=+++++.. .++.|.-= .. ..++.+...+-++ .|+.+
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L 106 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRL 106 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4567777788888999999753321111 12333335555542 23333211 11 2256665544332 23433
Q ss_pred C---CCCceEecCCCCC-----ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc--CCccEEEecCCcchHHHH
Q 013681 274 G---VIPVLFEQPVHRD-----DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE--NLASVVNIKLAKFGVLGT 343 (438)
Q Consensus 274 ~---l~~~~iEqPl~~~-----d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~--~a~d~i~lk~~~~Gi~~~ 343 (438)
+ +.++++-.|-... -|+.+.++.+ .+.==+.|=|.++...+.++++. ..++++|+..+.+--...
T Consensus 107 ~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~-----~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ 181 (285)
T cd06660 107 GTDYIDLYLLHWPDPDTPDIEETLRALEELVK-----EGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAE 181 (285)
T ss_pred CCCceeEEEecCCCCCCCCHHHHHHHHHHHHH-----cCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchH
Confidence 2 2234566664432 2445555543 23323445577788888888887 789999998877631112
Q ss_pred HHHHHHHHHcCCeEEEccCCchh
Q 013681 344 LQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 344 ~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
..+...|+++||+++..+.+.++
T Consensus 182 ~~~~~~~~~~gi~v~~~~~l~~g 204 (285)
T cd06660 182 EELLPYCREHGIGVIAYSPLAGG 204 (285)
T ss_pred HHHHHHHHHcCcEEEEeccccCc
Confidence 27899999999999988876544
|
AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=85.83 E-value=28 Score=31.85 Aligned_cols=138 Identities=16% Similarity=0.185 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (438)
..++++..+.++.+.+.|++.+.+..-. ....+.++.+++.+|++.+- +-.-.+.+++-.. .. .+.. ++=
T Consensus 12 ~~~~~~~~~~~~~l~~~G~~~vev~~~~--~~~~~~i~~l~~~~~~~~iG--ag~v~~~~~~~~a-~~---~Ga~--~i~ 81 (190)
T cd00452 12 GDDAEDALALAEALIEGGIRAIEITLRT--PGALEAIRALRKEFPEALIG--AGTVLTPEQADAA-IA---AGAQ--FIV 81 (190)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCCEEE--EEeCCCHHHHHHH-HH---cCCC--EEE
Confidence 3578888899999999999999998864 23666888888888764433 3333444443222 22 2321 342
Q ss_pred cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc-hHHHHHHHHHHHHHc-CCeEEE
Q 013681 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS-GLHLMI 359 (438)
Q Consensus 282 qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~-Gi~~~~~~~~~A~~~-gi~~~~ 359 (438)
=|- .+ ....+.++ +.++++..|=+ |+.++.++++. .+|++.+.+... |...... +.... +++++.
T Consensus 82 ~p~--~~-~~~~~~~~----~~~~~~i~gv~--t~~e~~~A~~~-Gad~i~~~p~~~~g~~~~~~---l~~~~~~~p~~a 148 (190)
T cd00452 82 SPG--LD-PEVVKAAN----RAGIPLLPGVA--TPTEIMQALEL-GADIVKLFPAEAVGPAYIKA---LKGPFPQVRFMP 148 (190)
T ss_pred cCC--CC-HHHHHHHH----HcCCcEECCcC--CHHHHHHHHHC-CCCEEEEcCCcccCHHHHHH---HHhhCCCCeEEE
Confidence 232 22 33334443 45788777533 88999888876 589999987543 4332222 22333 578776
Q ss_pred ccC
Q 013681 360 DGM 362 (438)
Q Consensus 360 ~s~ 362 (438)
.+-
T Consensus 149 ~GG 151 (190)
T cd00452 149 TGG 151 (190)
T ss_pred eCC
Confidence 543
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=85.74 E-value=10 Score=36.34 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCC-------C--------CCHHHHHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANE-------G--------YTSEEAVEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~-------~--------~s~~~A~~~l~ 268 (438)
++++..+.++++.+.|-..+||--+. +-+++++++++.+=-+-=|.|+.. + -..+++++.++
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~~---~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGGE---WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCcH---HHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 66788888999999999999998653 445678888875412334678731 1 13678899999
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
++++.|....|+|-+ +.+..+++++ ..++|+..
T Consensus 164 ay~~AGAd~i~~e~~----~~e~~~~i~~----~~~~P~~~ 196 (240)
T cd06556 164 AYAPAGADLIVMECV----PVELAKQITE----ALAIPLAG 196 (240)
T ss_pred HHHHcCCCEEEEcCC----CHHHHHHHHH----hCCCCEEE
Confidence 999988655699865 4677788886 57889864
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=85.63 E-value=14 Score=37.36 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEec--------------CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHH
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQ--------------PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ 320 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEq--------------Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~ 320 (438)
|..|+.++.+++++.|.+.++. .||= |....+++.++++.+.++ ++.+-..+.=...+..+++
T Consensus 18 ~~~f~~~~~~~ia~~Ld~aGV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEAGVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred CCcCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCccCHHHHH
Confidence 4568899999999999999985 8998 444567777777765432 2333333322334678888
Q ss_pred HHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEcc
Q 013681 321 KVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 321 ~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (438)
.+.+.+ ++.+.+-.. +- ...+.+.++.|++.|..+...-
T Consensus 95 ~a~~~g-vd~iri~~~-~~e~d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 95 AAYDAG-ARTVRVATH-CTEADVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHCC-CCEEEEEec-cchHHHHHHHHHHHHHcCCeEEEEE
Confidence 888764 788776432 23 5668899999999999876543
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=85.50 E-value=21 Score=36.06 Aligned_cols=141 Identities=11% Similarity=0.010 Sum_probs=70.4
Q ss_pred HHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhh
Q 013681 213 SKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 213 ~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~ 291 (438)
+...+.|.+.+.+-... +.+.-.+.++.+|+.|.++...+-.-...++++..+.++.+.+++....+|-+..-.-..+.
T Consensus 94 ~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 173 (333)
T TIGR03217 94 KAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDD 173 (333)
T ss_pred HHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHH
Confidence 44455666666655443 22333345555566655443332222355667777777777766654446666665445555
Q ss_pred HHHHHHhhccccC--CeEEEcCC-CCCH--HHHHHHHHcCCccEEEecCCcchH------HHHHHHHHHHHHcCCe
Q 013681 292 LHDVSNFARDTYG--ISVVADES-CRSL--NDVQKVMQENLASVVNIKLAKFGV------LGTLQIIKATRKSGLH 356 (438)
Q Consensus 292 ~a~L~~~~r~~~~--iPIa~dEs-l~~~--~d~~~ll~~~a~d~i~lk~~~~Gi------~~~~~~~~~A~~~gi~ 356 (438)
..++.+.+++..+ +||..-=. -.+. ......++.+ ++. +|.+..|+ ..+..++...+..|+.
T Consensus 174 v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~ 246 (333)
T TIGR03217 174 VRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG-ATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGWN 246 (333)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC-CCE--EEeecccccccccCccHHHHHHHHHhcCCC
Confidence 5555544444444 56644211 1111 1124445544 443 66665542 2345556666665543
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=85.29 E-value=27 Score=33.88 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec-----CC---CchHHHHHHHHHHh-h-C-CCcEEEEeCCCCCCHHHHHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNV-----GR---NITADFDVLQAIHA-V-H-PHCSFILDANEGYTSEEAVEV 266 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKv-----G~---d~~~di~~l~aiR~-~-~-~~~~L~vDAN~~~s~~~A~~~ 266 (438)
.+++++.+.++++.+.|-+.|++-. |. +.++++++|..+-+ + - -++.|.+|....-..+.|++.
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~ 94 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEA 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc
Confidence 4789999999999999999999942 11 34556666544333 2 1 278899998765555555543
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=85.09 E-value=28 Score=31.24 Aligned_cols=130 Identities=8% Similarity=0.064 Sum_probs=81.9
Q ss_pred ceeeeeeeCCCC----HHHHHHHHHHHhhcCCcEEEEecCC----C--chHHHHHHHHHHhhC-CCcEEEEeCCCCC--C
Q 013681 193 SLSTAITIPAVS----PAEASELASKYCKLGFSTLKLNVGR----N--ITADFDVLQAIHAVH-PHCSFILDANEGY--T 259 (438)
Q Consensus 193 ~ip~~~~i~~~~----~~~~~~~~~~~~~~Gf~~iKlKvG~----d--~~~di~~l~aiR~~~-~~~~L~vDAN~~~--s 259 (438)
++|+...++..+ .++..+.++...+.|...+.+-... + .+.-.+.++++++.. .++.+++..+-.+ +
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~ 127 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKT 127 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCC
Confidence 466656565555 7888888999999999999986532 1 334456667777753 5788888776443 5
Q ss_pred HHHHHHHHHHhhhCCCCCceEecCCCC----CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFEQPVHR----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEqPl~~----~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
+++..+..+.+.+.++. .|-..... .+++.++++.+.. ..++||..--...++..+.+.+..+
T Consensus 128 ~~~~~~~~~~~~~~g~~--~iK~~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~~gg~~~~~~~~~~~~~G 194 (201)
T cd00945 128 ADEIAKAARIAAEAGAD--FIKTSTGFGGGGATVEDVKLMKEAV--GGRVGVKAAGGIKTLEDALAAIEAG 194 (201)
T ss_pred HHHHHHHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHhc--ccCCcEEEECCCCCHHHHHHHHHhc
Confidence 66666666666666763 67655532 2677777776521 1145654333333566777777765
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.59 E-value=7.8 Score=38.24 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=47.5
Q ss_pred cccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 301 ~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
++.++||++-= ...+.+.+++.++.+ ++-|.+|-+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VE 132 (286)
T PRK12738 71 TTYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 36788988763 556888889999875 899999999873 7889999999999999874
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=84.19 E-value=25 Score=33.56 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCcEEEEecCCC---------------chHHHHHHHHHHhhCCCcEEEE-eCCC-CCCHHHHHHHHHHhhh
Q 013681 210 ELASKYCKLGFSTLKLNVGRN---------------ITADFDVLQAIHAVHPHCSFIL-DANE-GYTSEEAVEVLGKLND 272 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG~d---------------~~~di~~l~aiR~~~~~~~L~v-DAN~-~~s~~~A~~~l~~L~~ 272 (438)
+.++.+.+.|+..+.+-+..+ ++.-.+.++.+++.+-.+.+.+ |+.. ..++++..++++.+.+
T Consensus 78 ~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (265)
T cd03174 78 KGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEE 157 (265)
T ss_pred hhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 345556677877777766532 2333344455555565666666 5654 4888888889999888
Q ss_pred CCCCCceEecCCCCCChhhHHHHHHhhccccC-CeEEE
Q 013681 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVA 309 (438)
Q Consensus 273 ~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~-iPIa~ 309 (438)
++.....+-+-.-.-..+.+.++-+.+++..+ +||..
T Consensus 158 ~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 158 AGADEISLKDTVGLATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred cCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 87652233222222233444444444443444 55543
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.10 E-value=9.5 Score=37.65 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=48.9
Q ss_pred HHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcc-h---HHHHHHHHHHHHHcCCeE
Q 013681 292 LHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF-G---VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 292 ~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~-G---i~~~~~~~~~A~~~gi~~ 357 (438)
+..+...+.++.++||++-= ...+.+.+++.++.+ ++.|++|-+.. . +..++++.++|+.+|+.+
T Consensus 62 ~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 62 LVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 33333333346788887753 456778889999975 89999998876 2 777999999999999976
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=83.85 E-value=40 Score=33.96 Aligned_cols=121 Identities=18% Similarity=0.302 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhcCC--cEEEEecCC-CchHHHHHHHHHHhhCCCcEEEE-eCCCCCCHHHHHHHHHHhhh---CCCCC--
Q 013681 207 EASELASKYCKLGF--STLKLNVGR-NITADFDVLQAIHAVHPHCSFIL-DANEGYTSEEAVEVLGKLND---MGVIP-- 277 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf--~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~v-DAN~~~s~~~A~~~l~~L~~---~~l~~-- 277 (438)
+..+++.++++.|. ..+-+.+-. +.+.-.+.++.||+.+|++.+++ |.- |.++|....+.=.+ .+.+.
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l~~aGad~i~vg~~~G~ 173 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVRELENAGADATKVGIGPGK 173 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHHHHcCcCEEEECCCCCc
Confidence 34567888889976 999987764 45666778999999999988888 766 77777655543111 01110
Q ss_pred ceEecCCC---CCChh--hHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 278 VLFEQPVH---RDDWS--GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 278 ~~iEqPl~---~~d~~--~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
..+|++.. ..+|. .++++++ ...+||..|--+.+..|+.+++..+ ++.+.+--
T Consensus 174 ~~~t~~~~g~~~~~w~l~ai~~~~~----~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG~ 231 (326)
T PRK05458 174 VCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ATMVMIGS 231 (326)
T ss_pred ccccccccCCCCCccHHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEech
Confidence 12465543 33443 3555554 4579999999999999999999885 77777653
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=83.80 E-value=57 Score=38.63 Aligned_cols=163 Identities=14% Similarity=0.208 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHHhhc--CCcEEEEecCCC--------chHHHHHHHHHHhhCCCcEEEEeCCC----CCC--HHHHH-HH
Q 013681 204 SPAEASELASKYCKL--GFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDANE----GYT--SEEAV-EV 266 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~--Gf~~iKlKvG~d--------~~~di~~l~aiR~~~~~~~L~vDAN~----~~s--~~~A~-~~ 266 (438)
+.+++...++.+-+. ||..+-+-.|.. -+++.++|+.+|+..|+..|..=..+ +|+ +++.+ ++
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~ 632 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAF 632 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHH
Confidence 567888888888888 999999887742 25689999999998887766543333 454 34444 46
Q ss_pred HHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC----CeEEE-----c--CCCCCHHHH----HHHHHcCCccEE
Q 013681 267 LGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG----ISVVA-----D--ESCRSLNDV----QKVMQENLASVV 331 (438)
Q Consensus 267 l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~----iPIa~-----d--Esl~~~~d~----~~ll~~~a~d~i 331 (438)
++...+.++.+..|=+++. |.+.+....+.+++. + +-|.. | ...++++.+ +++.+. .+|.|
T Consensus 633 i~~a~~~Gid~~rifd~ln--d~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~-Ga~~i 708 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLN--WVENMRVAIDAVRET-GKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKA-GAHIL 708 (1146)
T ss_pred HHHHHHcCCCEEEEeccCC--hHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc-CCCEE
Confidence 8888887776555666665 356666555444432 3 22221 1 122455433 455555 47888
Q ss_pred EecCCcch-H--HHHHHHHHHHH-HcCCeEEEccCCchhHHHHH
Q 013681 332 NIKLAKFG-V--LGTLQIIKATR-KSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 332 ~lk~~~~G-i--~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a 371 (438)
.+|=+. | + ..+.+++...+ +.++++.+|+-..+|++.+.
T Consensus 709 ~ikDt~-G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an 751 (1146)
T PRK12999 709 AIKDMA-GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLAT 751 (1146)
T ss_pred EECCcc-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHH
Confidence 887665 6 3 34555555544 45899999987666655543
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=83.72 E-value=38 Score=31.65 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCcEEEEecCCC--c--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCC-----ceE
Q 013681 210 ELASKYCKLGFSTLKLNVGRN--I--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIP-----VLF 280 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG~d--~--~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~-----~~i 280 (438)
+++++..+.|-..+-+-.... + ++..+.++.+++. +++.+.++.+ +.+++. ++.+.+... ...
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~---t~ee~~----~a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS---TLEEGL----AAQKLGFDFIGTTLSGY 150 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC---CHHHHH----HHHHcCCCEEEcCCcee
Confidence 345667789988766654321 2 4555678888887 7888888876 667764 333334320 012
Q ss_pred ecC---CCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 281 EQP---VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 281 EqP---l~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
+.. ....+++..+++++ ..++||...=-+.+.+++.++++.+ +|.+.+=-..+
T Consensus 151 t~~~~~~~~~~~~~i~~i~~----~~~iPvia~GGI~t~~~~~~~l~~G-adgV~iGsai~ 206 (221)
T PRK01130 151 TEETKKPEEPDFALLKELLK----AVGCPVIAEGRINTPEQAKKALELG-AHAVVVGGAIT 206 (221)
T ss_pred ecCCCCCCCcCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEchHhc
Confidence 221 12224555566654 5689999888888999999999876 78877654433
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=83.72 E-value=24 Score=33.54 Aligned_cols=127 Identities=21% Similarity=0.167 Sum_probs=79.9
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCC--CcEEEEeCCCC--------CCHHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP--HCSFILDANEG--------YTSEEA 263 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~--~~~L~vDAN~~--------~s~~~A 263 (438)
+|+-...++.+.++ ++++++.|. -|+=+|...-++ +.++.+-+.++ .+-+.+|+... .++.+.
T Consensus 79 ~~v~vgGGir~~ed----v~~~l~~Ga--~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~ 151 (233)
T cd04723 79 LGLWVDGGIRSLEN----AQEWLKRGA--SRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEEL 151 (233)
T ss_pred CCEEEecCcCCHHH----HHHHHHcCC--CeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHH
Confidence 34334445566554 455677784 445567644556 78877777654 58899999655 457776
Q ss_pred HHHHHHhhhCCCCCceEe--cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 264 VEVLGKLNDMGVIPVLFE--QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iE--qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
++.++.. .-.+++.-|. -.....|++.++++++ .+++||..+=-+.+.+|++++++.+ ++.+.+
T Consensus 152 ~~~~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~viv 217 (233)
T cd04723 152 LRRLAKW-PEELIVLDIDRVGSGQGPDLELLERLAA----RADIPVIAAGGVRSVEDLELLKKLG-ASGALV 217 (233)
T ss_pred HHHHHHh-CCeEEEEEcCccccCCCcCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 6666555 2222211111 1112235677777875 5789998888899999999999875 555554
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=83.55 E-value=25 Score=34.15 Aligned_cols=147 Identities=16% Similarity=0.183 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHH----HHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC-CC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQ----AIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV-IP 277 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~----aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l-~~ 277 (438)
.+++.+.+.++++.++|-..+=+-.+...+++.+++. .+++. .++.|.||....=..+.|++. ...-++ .+
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~-~~~plsIDT~~~~v~eaaL~~---~~G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEV-VDVPLCIDSPNPAAIEAGLKV---AKGPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHh-CCCCEEEeCCCHHHHHHHHHh---CCCCCEEEe
Confidence 4788888999999999999999988876666666553 33332 268899998655444444443 222111 11
Q ss_pred ceEecCCCCCChhhHHHHHHhhccccCCeEE---EcCC-CC-CH----HHH----HHHHHcCC-ccEEEecCCcc--h--
Q 013681 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVV---ADES-CR-SL----NDV----QKVMQENL-ASVVNIKLAKF--G-- 339 (438)
Q Consensus 278 ~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa---~dEs-l~-~~----~d~----~~ll~~~a-~d~i~lk~~~~--G-- 339 (438)
.+-|+ +..+.+..+++ +.+.|+. .|+. .. +. ..+ ..+.+.+- .+=+.+||... |
T Consensus 98 Is~~~----~~~~~~~~l~~----~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~ 169 (261)
T PRK07535 98 VSAEG----EKLEVVLPLVK----KYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAA 169 (261)
T ss_pred CCCCC----ccCHHHHHHHH----HhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCC
Confidence 13332 22456666665 4667765 3321 11 11 122 22333331 14588998653 2
Q ss_pred ---HHHHHHHHHHHHHc--CCeEEEcc
Q 013681 340 ---VLGTLQIIKATRKS--GLHLMIDG 361 (438)
Q Consensus 340 ---i~~~~~~~~~A~~~--gi~~~~~s 361 (438)
...+++.++..++. |.++.++-
T Consensus 170 ~~~~~~~l~~i~~l~~~~pg~p~l~G~ 196 (261)
T PRK07535 170 QDAGPEVLETIRRIKELYPKVHTTCGL 196 (261)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 22346666666665 89998874
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=83.07 E-value=48 Score=32.34 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCC--------chHHHHHHHHHHhhCCCcEEEEeCC----CCCC--HHH-HHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDAN----EGYT--SEE-AVEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d--------~~~di~~l~aiR~~~~~~~L~vDAN----~~~s--~~~-A~~~l~ 268 (438)
+.++..+.+..+.+.||..|-+-.+.. -++|.+.++.+++..++.+|..=+. -+|+ |++ -...++
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 677778888999999999998876531 3568899999999777655542222 1221 222 245666
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE-----cCCCCCHHHH----HHHHHcCCccEEEecCCc-c
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA-----DESCRSLNDV----QKVMQENLASVVNIKLAK-F 338 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~-----dEsl~~~~d~----~~ll~~~a~d~i~lk~~~-~ 338 (438)
...+.++....|--|+. +++.+....+.+++ .+.-+.. +-+-.+.+.+ +++.+. .++.|.++=+. .
T Consensus 99 ~~~~~g~~~iri~~~~~--~~~~~~~~i~~ak~-~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~-Ga~~i~l~DT~G~ 174 (275)
T cd07937 99 KAAKNGIDIFRIFDALN--DVRNLEVAIKAVKK-AGKHVEGAICYTGSPVHTLEYYVKLAKELEDM-GADSICIKDMAGL 174 (275)
T ss_pred HHHHcCCCEEEEeecCC--hHHHHHHHHHHHHH-CCCeEEEEEEecCCCCCCHHHHHHHHHHHHHc-CCCEEEEcCCCCC
Confidence 66666654334555654 46656555444433 3443322 2244555554 344444 47777775544 2
Q ss_pred h-HHHHHHHHHHHHH-cCCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 339 G-VLGTLQIIKATRK-SGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 339 G-i~~~~~~~~~A~~-~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
+ .....+++...++ .++++-+|+-...+ ++.+..+++.-....++|
T Consensus 175 ~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G--lA~aN~laA~~aGa~~vd 222 (275)
T cd07937 175 LTPYAAYELVKALKKEVGLPIHLHTHDTSG--LAVATYLAAAEAGVDIVD 222 (275)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEecCCCC--hHHHHHHHHHHhCCCEEE
Confidence 3 4456666665544 47888888754444 443333433322345554
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=82.88 E-value=68 Score=33.99 Aligned_cols=177 Identities=18% Similarity=0.244 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCc--------hHHHHHHHHHHhhCCCcEEEE--eC-C-CCC--CHHHHH-HHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNI--------TADFDVLQAIHAVHPHCSFIL--DA-N-EGY--TSEEAV-EVL 267 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~--------~~di~~l~aiR~~~~~~~L~v--DA-N-~~~--s~~~A~-~~l 267 (438)
.+.+++.+.++.+.+.||..|-+-.|..+ +++.++++.+++..++..+.. =+ | -+| -+++.+ .++
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv 101 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFV 101 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHH
Confidence 36788888999999999999999544322 457889999999878777754 22 3 245 245543 456
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCC-----CCCHHHH----HHHHHcCCccEEEecCCcc
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES-----CRSLNDV----QKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEs-----l~~~~d~----~~ll~~~a~d~i~lk~~~~ 338 (438)
++..+.++...-|=.|+. |.+.+....+.++ +.+.-+....+ .++.+.+ +++.+.+ +|.|.++=+-
T Consensus 102 ~~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-ad~I~i~Dt~- 176 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALN--DIRNLEKSIEVAK-KHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-VDSICIKDMA- 176 (467)
T ss_pred HHHHHCCcCEEEEEEeCC--HHHHHHHHHHHHH-HCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcc-
Confidence 776777765345555554 4555554443333 24555543332 2333333 4555554 7888887655
Q ss_pred h---HHHHHHHHHHHH-HcCCeEEEccCCchhHHHHHHHHHHhhcCCcceee
Q 013681 339 G---VLGTLQIIKATR-KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN 386 (438)
Q Consensus 339 G---i~~~~~~~~~A~-~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e 386 (438)
| -..+.+++...+ +.++++.+|+-...|++++ ..+++.-....++|
T Consensus 177 G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~A--N~laAieaGad~vD 226 (467)
T PRK14041 177 GLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASL--AYLAAVEAGADMFD 226 (467)
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHH--HHHHHHHhCCCEEE
Confidence 5 345556655544 4588999988655555544 33433322344554
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=82.84 E-value=11 Score=37.15 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=47.3
Q ss_pred cccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 301 ~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
++.++||++-= ...+.+.+.+.++.+ ++-|++|-|..= +..++++.++|+++|+.+-
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 130 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 36788988763 556788899999985 899999999872 7789999999999998873
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=82.47 E-value=32 Score=34.77 Aligned_cols=141 Identities=10% Similarity=0.010 Sum_probs=69.6
Q ss_pred HHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhh
Q 013681 213 SKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 213 ~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~ 291 (438)
+...+.|.+.+.+-... +.+.-.+.++.+|+.|.++...+=--..+++++..+.++.+.+++....+|-+..-.-..+.
T Consensus 95 ~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 174 (337)
T PRK08195 95 KMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPED 174 (337)
T ss_pred HHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHH
Confidence 34445666666655443 22333445556666655444332222456677777777777766654345555554444555
Q ss_pred HHHHHHhhcccc--CCeEEEcCC-CCCH--HHHHHHHHcCCccEEEecCCcchH------HHHHHHHHHHHHcCCe
Q 013681 292 LHDVSNFARDTY--GISVVADES-CRSL--NDVQKVMQENLASVVNIKLAKFGV------LGTLQIIKATRKSGLH 356 (438)
Q Consensus 292 ~a~L~~~~r~~~--~iPIa~dEs-l~~~--~d~~~ll~~~a~d~i~lk~~~~Gi------~~~~~~~~~A~~~gi~ 356 (438)
..++-+.+++.. ++||..-=. -.+. .....+++.+ ++ .+|.+..|+ ..+..++...+..|+.
T Consensus 175 v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~--~iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 175 VRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG-AT--RIDGSLAGLGAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC-CC--EEEecChhhcccccCccHHHHHHHHHhcCCC
Confidence 555544444444 456544211 1111 1124455544 33 466665542 2245555556655543
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=82.28 E-value=12 Score=36.81 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=47.3
Q ss_pred cccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcc--h--HHHHHHHHHHHHHcCCeEE
Q 013681 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKF--G--VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 301 ~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~--G--i~~~~~~~~~A~~~gi~~~ 358 (438)
++.++||++-= ...+.+++.+.++.+ ++.|++|-+.. - +..+++++++|+++|+.+-
T Consensus 66 ~~~~VPV~lHLDH~~~~~~i~~ai~~G-ftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VE 127 (276)
T cd00947 66 ERASVPVALHLDHGSSFELIKRAIRAG-FSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVE 127 (276)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 35688887763 556788899999986 99999999987 2 8889999999999999874
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=81.99 E-value=51 Score=31.90 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEec-----CC---CchHHHHHH----HHHHhhCCCcEEEEeCCCCCCHHHHHH
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNV-----GR---NITADFDVL----QAIHAVHPHCSFILDANEGYTSEEAVE 265 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKv-----G~---d~~~di~~l----~aiR~~~~~~~L~vDAN~~~s~~~A~~ 265 (438)
.+.+++.++++++++.|-..|=+-. |. +.+++++++ +.+++.. ++.|.+|....=-.+.|++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSIDT~~~~v~e~al~ 94 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISVDTFRAEVARAALE 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEEeCCCHHHHHHHHH
Confidence 3778899999999999999988842 32 456777775 4555433 6789999755433333333
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.94 E-value=60 Score=32.60 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=78.3
Q ss_pred HHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE------
Q 013681 208 ASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF------ 280 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i------ 280 (438)
..+.++.+++.|.+.|-+-... +.+.-.+.++.+|+.+|++.+++ ...-++++|....+. +....-+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l~~a----GaD~I~vg~g~G~ 168 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDLIDA----GADGVKVGIGPGS 168 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHHHhc----CCCEEEECCCCCc
Confidence 3566778889999998887643 23445678999999888888887 333567776665542 3220011
Q ss_pred ------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 281 ------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 281 ------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
.......++..+.++++.+ +..++||..|--+.+..++.+++..+ ++.+++-
T Consensus 169 ~~~t~~~~g~g~p~~~~i~~v~~~~-~~~~vpVIA~GGI~~~~di~kAla~G-A~~VmiG 226 (325)
T cd00381 169 ICTTRIVTGVGVPQATAVADVAAAA-RDYGVPVIADGGIRTSGDIVKALAAG-ADAVMLG 226 (325)
T ss_pred CcccceeCCCCCCHHHHHHHHHHHH-hhcCCcEEecCCCCCHHHHHHHHHcC-CCEEEec
Confidence 1112223555666665432 23579999999999999999999865 6777764
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.86 E-value=11 Score=37.05 Aligned_cols=57 Identities=7% Similarity=0.131 Sum_probs=47.3
Q ss_pred cccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 301 DTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 301 ~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
++.++||++-= ...+.+..+++++.+ ++-|.+|.|..- +..++++.++|+.+|+.+-
T Consensus 71 ~~~~VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VE 132 (284)
T PRK09195 71 KQYHHPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 35788988763 556788889999986 899999999873 7889999999999998763
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.77 E-value=20 Score=33.65 Aligned_cols=143 Identities=16% Similarity=0.239 Sum_probs=95.9
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
+-..++++....++.+.+.|++++.+-...+ .-.+.++++++.+| +..+=|..-.+++|+.+..+.=.+ |
T Consensus 19 lr~~~~e~a~~~a~Ali~gGi~~IEITl~sp--~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a~~aGa~------f 88 (211)
T COG0800 19 IRGDDVEEALPLAKALIEGGIPAIEITLRTP--AALEAIRALAKEFP--EALIGAGTVLNPEQARQAIAAGAQ------F 88 (211)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCeEEEecCCC--CHHHHHHHHHHhCc--ccEEccccccCHHHHHHHHHcCCC------E
Confidence 3356899999999999999999999998753 33457888888888 778888888999987766554333 4
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-chHHHHHHHHHHHHHcCCeEE
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~Gi~~~~~~~~~A~~~gi~~~ 358 (438)
|=-|-- -.+..+.|. +.++|+.-| +.|+.++..+++.+ ++.+-+=|.. +|-...++...- =--+++++
T Consensus 89 iVsP~~---~~ev~~~a~----~~~ip~~PG--~~TptEi~~Ale~G-~~~lK~FPa~~~Gg~~~~ka~~g-P~~~v~~~ 157 (211)
T COG0800 89 IVSPGL---NPEVAKAAN----RYGIPYIPG--VATPTEIMAALELG-ASALKFFPAEVVGGPAMLKALAG-PFPQVRFC 157 (211)
T ss_pred EECCCC---CHHHHHHHH----hCCCcccCC--CCCHHHHHHHHHcC-hhheeecCccccCcHHHHHHHcC-CCCCCeEe
Confidence 544443 245555664 578999876 67888998898876 5665555543 342222221100 01247777
Q ss_pred EccCC
Q 013681 359 IDGMI 363 (438)
Q Consensus 359 ~~s~~ 363 (438)
+++-.
T Consensus 158 pTGGV 162 (211)
T COG0800 158 PTGGV 162 (211)
T ss_pred ecCCC
Confidence 77654
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.69 E-value=36 Score=34.90 Aligned_cols=103 Identities=20% Similarity=0.256 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhCCCCCceEec-------CC-CC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 261 EEAVEVLGKLNDMGVIPVLFEQ-------PV-HR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEq-------Pl-~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
.++.++++.+.+.++. +|.= -- .. .++..+.++.+ +.++||..+. +.+.++.+++++. .+|+|
T Consensus 141 ~~~~e~a~~l~eaGvd--~I~vhgrt~~~~h~~~~~~~~~i~~~ik----~~~ipVIaG~-V~t~e~A~~l~~a-GAD~V 212 (368)
T PRK08649 141 QRAQELAPTVVEAGVD--LFVIQGTVVSAEHVSKEGEPLNLKEFIY----ELDVPVIVGG-CVTYTTALHLMRT-GAAGV 212 (368)
T ss_pred cCHHHHHHHHHHCCCC--EEEEeccchhhhccCCcCCHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHc-CCCEE
Confidence 3455566666665543 3331 11 11 25666666654 4689988744 8889999999985 58888
Q ss_pred EecCC---------cc--hH---HHHHHHHHHHHHc-------CCeEEEccCCchhHHHHH
Q 013681 332 NIKLA---------KF--GV---LGTLQIIKATRKS-------GLHLMIDGMIETRLATGF 371 (438)
Q Consensus 332 ~lk~~---------~~--Gi---~~~~~~~~~A~~~-------gi~~~~~s~~es~ig~~a 371 (438)
.+-.. .. |+ +...+..+.++++ +++++-.+-+.++-..+.
T Consensus 213 ~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diak 273 (368)
T PRK08649 213 LVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAK 273 (368)
T ss_pred EECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHH
Confidence 65421 11 21 2223333333433 688888776655444333
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=81.61 E-value=29 Score=32.61 Aligned_cols=128 Identities=14% Similarity=0.215 Sum_probs=78.5
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhh-C-CCcEEEEeCCC------CCCH---HH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-H-PHCSFILDANE------GYTS---EE 262 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~-~-~~~~L~vDAN~------~~s~---~~ 262 (438)
+|+....++.+.+++ +++.+.|...+ =+|...-+|.+.+..+.+. + ..+-+.+|... +|.. ..
T Consensus 73 ~pi~~ggGI~~~ed~----~~~~~~Ga~~v--vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~ 146 (230)
T TIGR00007 73 VPVQVGGGIRSLEDV----EKLLDLGVDRV--IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVS 146 (230)
T ss_pred CCEEEeCCcCCHHHH----HHHHHcCCCEE--EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCC
Confidence 344444455676654 44567888754 3554444566667666664 4 34777788652 2321 23
Q ss_pred HHHHHHHhhhCCCCCceE------ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 263 AVEVLGKLNDMGVIPVLF------EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~i------EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
..++++.+.+.+.. ..+ +......|++.++++++ .+++||...=-+.+.+|++++.+. .++.+++
T Consensus 147 ~~~~~~~~~~~g~~-~ii~~~~~~~g~~~g~~~~~i~~i~~----~~~ipvia~GGi~~~~di~~~~~~-Gadgv~i 217 (230)
T TIGR00007 147 LEELAKRLEELGLE-GIIYTDISRDGTLSGPNFELTKELVK----AVNVPVIASGGVSSIDDLIALKKL-GVYGVIV 217 (230)
T ss_pred HHHHHHHHHhCCCC-EEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHC-CCCEEEE
Confidence 35566666666543 223 22223336777787775 578999888889999999998875 4776665
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=81.60 E-value=55 Score=32.80 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=89.8
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC---Cc--------hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR---NI--------TADFDVLQAIHAVHPHCSFILDANEGYTSEE 262 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~---d~--------~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~ 262 (438)
.|+..++...++++..+.++...+.|+..+-+.++. +. +.-.+.++++|+.. ++.+.|=-...++ +
T Consensus 100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~--~ 176 (325)
T cd04739 100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFS--A 176 (325)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCcc--C
Confidence 466667766788888888888878899999999972 11 11246778888743 2233333222222 4
Q ss_pred HHHHHHHhhhCCCCCc-----eEecCCCC------------------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHH
Q 013681 263 AVEVLGKLNDMGVIPV-----LFEQPVHR------------------DDWSGLHDVSNFARDTYGISVVADESCRSLNDV 319 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~-----~iEqPl~~------------------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~ 319 (438)
..++++.+.+.++.-. ...-++.. .-++..++++ +..++||.+.=-+.+.+|+
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~----~~~~ipIig~GGI~s~~Da 252 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILS----GRVKASLAASGGVHDAEDV 252 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHH----cccCCCEEEECCCCCHHHH
Confidence 5556666665443200 10111100 0011122333 3578999988899999999
Q ss_pred HHHHHcCCccEEEecCCcc--h---HHH-HHHHHHHHHHcCCe
Q 013681 320 QKVMQENLASVVNIKLAKF--G---VLG-TLQIIKATRKSGLH 356 (438)
Q Consensus 320 ~~ll~~~a~d~i~lk~~~~--G---i~~-~~~~~~~A~~~gi~ 356 (438)
.+.+.. .++.+|+=-..+ | +.. ..++.++.+++|..
T Consensus 253 ~e~l~a-GA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 253 VKYLLA-GADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred HHHHHc-CCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 999875 588888865432 4 222 33455556666654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.41 E-value=12 Score=36.98 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=47.0
Q ss_pred ccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.++||++-= ...+.+.+.+.++.+ ++-|.+|.|..- +..++++.++|+++|+.+-
T Consensus 72 ~~~VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 72 KYNIPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788988763 455788889999985 889999999873 7889999999999999874
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=81.31 E-value=10 Score=35.56 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEec---CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQ---PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEq---Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.+++++..++...+.++++..++|. .....+.+-.+++++ .+++|+..+=-+.+.++++++++.+ +|.+++
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~----~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK----ASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH----hhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEe
Confidence 5789999999999988887678888 444455666676665 5789999999999999999998776 677764
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=81.26 E-value=15 Score=37.40 Aligned_cols=99 Identities=15% Similarity=0.289 Sum_probs=67.9
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEec--CCC-CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEE
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PVH-RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl~-~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~ 332 (438)
-.|+.++-+++++.|.+.|+. .||= |.. +++++..+.+.+. .....|+.-= -.+..+++.+++.+ ++.+.
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~~---~~~~~v~~~~-r~~~~di~~a~~~g-~~~i~ 89 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVD--VIEAGFPIASEGEFEAIKKISQE---GLNAEICSLA-RALKKDIDKAIDCG-VDSIH 89 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHhc---CCCcEEEEEc-ccCHHHHHHHHHcC-cCEEE
Confidence 357899999999999999985 8997 554 3456666666542 2344444211 24678899888875 66666
Q ss_pred e--cC---------C--cch-HHHHHHHHHHHHHcCCeEEEcc
Q 013681 333 I--KL---------A--KFG-VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 333 l--k~---------~--~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (438)
+ .. . .-. +..+.+.++.|++.|+.+.++-
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 132 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA 132 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 6 11 1 112 5667889999999999887764
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.63 E-value=52 Score=35.15 Aligned_cols=106 Identities=15% Similarity=0.317 Sum_probs=69.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCC----hhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHH
Q 013681 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVM 323 (438)
Q Consensus 249 ~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d----~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll 323 (438)
+|+|-+--+-++++ ++.+++|-+.++. .||=....++ ++..+++++ .. ++||.++ .+.+.++.+.++
T Consensus 229 rL~Vgaavg~~~~~-~~~~~~l~~ag~d--~i~id~a~G~s~~~~~~i~~ik~----~~~~~~v~aG-~V~t~~~a~~~~ 300 (495)
T PTZ00314 229 QLLVGAAISTRPED-IERAAALIEAGVD--VLVVDSSQGNSIYQIDMIKKLKS----NYPHVDIIAG-NVVTADQAKNLI 300 (495)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHCCCC--EEEEecCCCCchHHHHHHHHHHh----hCCCceEEEC-CcCCHHHHHHHH
Confidence 45554433334444 7888888888874 6775543332 344555553 43 6899887 778899999999
Q ss_pred HcCCccEEEecC--C---------cch---HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 324 QENLASVVNIKL--A---------KFG---VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 324 ~~~a~d~i~lk~--~---------~~G---i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
+.+ +|+|.+-. . -+| ++...++++.|+++|++++..+-.
T Consensus 301 ~aG-ad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi 353 (495)
T PTZ00314 301 DAG-ADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGI 353 (495)
T ss_pred HcC-CCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCC
Confidence 875 88886532 1 134 455577888999999999985433
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=80.47 E-value=57 Score=32.76 Aligned_cols=136 Identities=17% Similarity=0.206 Sum_probs=83.2
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------Cc-hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------NI-TADFDVLQAIHAVHPHCSFILDANEGYTSEE 262 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------d~-~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~ 262 (438)
+|+..++...++++..+.++.+.+.|+..+-+.++- +. +.-.+.+++|++.. ++.+.|=-+..+ ++
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~--~~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYF--SN 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCc--hh
Confidence 566777777788888888888888899999997752 11 12346677787743 344444433333 34
Q ss_pred HHHHHHHhhhCCCCCceEec--CCCC--CChh------------------hHHHHHHhhccccCCeEEEcCCCCCHHHHH
Q 013681 263 AVEVLGKLNDMGVIPVLFEQ--PVHR--DDWS------------------GLHDVSNFARDTYGISVVADESCRSLNDVQ 320 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~iEq--Pl~~--~d~~------------------~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~ 320 (438)
..++++.+++.++. .|-- -+.. -|++ .++.+. .+++..++||.+.=-+.+..|+.
T Consensus 179 ~~~~a~~l~~~G~d--gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~-~~~~~~~ipIig~GGI~s~~Da~ 255 (334)
T PRK07565 179 LANMAKRLDAAGAD--GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIA-ILSGRVGADLAATTGVHDAEDVI 255 (334)
T ss_pred HHHHHHHHHHcCCC--eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHH-HHHhhcCCCEEEECCCCCHHHHH
Confidence 55677777776653 2210 0000 1111 111111 12235689999888899999999
Q ss_pred HHHHcCCccEEEecCC
Q 013681 321 KVMQENLASVVNIKLA 336 (438)
Q Consensus 321 ~ll~~~a~d~i~lk~~ 336 (438)
+.+..+ ++.+|+=-.
T Consensus 256 e~l~aG-A~~V~v~t~ 270 (334)
T PRK07565 256 KMLLAG-ADVVMIASA 270 (334)
T ss_pred HHHHcC-CCceeeehH
Confidence 999865 888887543
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=80.46 E-value=21 Score=34.56 Aligned_cols=103 Identities=14% Similarity=0.231 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEec--CC-CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC---cc
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQ--PV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL---AS 329 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEq--Pl-~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a---~d 329 (438)
..|+.++.+++++.|.+.|+. .||= |. .+.+++.++.+.+. ..+..+..== -.+..+++.+++.+. ++
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~l~~~---~~~~~~~~l~-r~~~~~v~~a~~~~~~~~~~ 88 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVD--VIEAGFPAASPGDFEAVKRIARE---VLNAEICGLA-RAVKKDIDAAAEALKPAKVD 88 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHh---CCCCEEEEEc-cCCHhhHHHHHHhCCCCCCC
Confidence 357899999999999999985 8997 54 44567777777642 2345554211 134677887777653 67
Q ss_pred EEEecCCc----------c---h-HHHHHHHHHHHHHcCCeEEEccCCc
Q 013681 330 VVNIKLAK----------F---G-VLGTLQIIKATRKSGLHLMIDGMIE 364 (438)
Q Consensus 330 ~i~lk~~~----------~---G-i~~~~~~~~~A~~~gi~~~~~s~~e 364 (438)
.+.+=.+. . - +....+.++.|++.|+.+.++.+..
T Consensus 89 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 137 (268)
T cd07940 89 RIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDA 137 (268)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecC
Confidence 66663211 1 2 4557789999999999999886643
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.41 E-value=73 Score=32.66 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE-----ecC
Q 013681 209 SELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-----EQP 283 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i-----EqP 283 (438)
.+.++.+.+.++..+ +++.-.++++++|+.+=.+++|+ ++..+.++++.+.+.+.....+ +|=
T Consensus 102 a~aa~~~~e~~~~~~------~p~l~~~ii~~vr~a~VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~ 169 (369)
T TIGR01304 102 AAATRLLQELHAAPL------KPELLGERIAEVRDSGVITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAE 169 (369)
T ss_pred HHHHHHHHHcCCCcc------ChHHHHHHHHHHHhcceEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhh
Confidence 344444444554442 23444567777877543345555 2346677888887777642121 111
Q ss_pred C--CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEE
Q 013681 284 V--HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 284 l--~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~ 332 (438)
- ...+|..+.++.+ +.++||..+. +.+.++.+++++. .+|+|+
T Consensus 170 ~~sg~~~p~~l~~~i~----~~~IPVI~G~-V~t~e~A~~~~~a-GaDgV~ 214 (369)
T TIGR01304 170 HVSTSGEPLNLKEFIG----ELDVPVIAGG-VNDYTTALHLMRT-GAAGVI 214 (369)
T ss_pred ccCCCCCHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHc-CCCEEE
Confidence 1 1346777777775 5789998743 8899999999986 488887
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=80.34 E-value=38 Score=35.65 Aligned_cols=99 Identities=8% Similarity=0.061 Sum_probs=43.4
Q ss_pred HHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeC--CCCCCHHHHHHHHHHhhhCCCCCceEecCCCCC
Q 013681 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDA--NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD 287 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDA--N~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~ 287 (438)
.+++..+.|.+.|.+-... +.+.=.+.++.+++.|-.+...+-. ....+++..+++++++.+.+.+...|=+..---
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l 180 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGIL 180 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 3444455555555555443 2221112334444444332222211 123445555555555555554434455555444
Q ss_pred ChhhHHHHHHhhccccCCeEEE
Q 013681 288 DWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
......+|.+.+|+..++||..
T Consensus 181 ~P~~v~~lv~alk~~~~~pi~~ 202 (448)
T PRK12331 181 TPYVAYELVKRIKEAVTVPLEV 202 (448)
T ss_pred CHHHHHHHHHHHHHhcCCeEEE
Confidence 4444444444444444555543
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=80.17 E-value=15 Score=37.10 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=82.2
Q ss_pred eeeeeeeCCC-------CHHHHHHHHHHHhhcCCcEEEEecCC----------CchHHHHHHHHHHhhCC----CcEEEE
Q 013681 194 LSTAITIPAV-------SPAEASELASKYCKLGFSTLKLNVGR----------NITADFDVLQAIHAVHP----HCSFIL 252 (438)
Q Consensus 194 ip~~~~i~~~-------~~~~~~~~~~~~~~~Gf~~iKlKvG~----------d~~~di~~l~aiR~~~~----~~~L~v 252 (438)
+|+..++... +.++..+.+++. +.+...+-+.++- +.+.-.+.+++||+... ++.+.|
T Consensus 138 ~pvivsI~~~~~~~~~~~~~d~~~~~~~~-~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~v 216 (344)
T PRK05286 138 IPLGINIGKNKDTPLEDAVDDYLICLEKL-YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLV 216 (344)
T ss_pred CcEEEEEecCCCCCcccCHHHHHHHHHHH-HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEE
Confidence 5555555432 466777777765 4468888887752 23444567889988432 355555
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceE----------ecCCC---CC----------ChhhHHHHHHhhcccc--CCeE
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLF----------EQPVH---RD----------DWSGLHDVSNFARDTY--GISV 307 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~i----------EqPl~---~~----------d~~~~a~L~~~~r~~~--~iPI 307 (438)
=-+-.++.++..++++.+++.++.-.-+ +.|.. .+ .++..+++++ +. ++||
T Consensus 217 Klsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~----~~~~~ipI 292 (344)
T PRK05286 217 KIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYK----ELGGRLPI 292 (344)
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHH----HhCCCCCE
Confidence 4444577778888999988766431011 11100 00 1223333433 45 6899
Q ss_pred EEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 308 VADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 308 a~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
.+-=-+.+.+|+.+++..+ +|.|++=-
T Consensus 293 ig~GGI~s~eda~e~l~aG-Ad~V~v~~ 319 (344)
T PRK05286 293 IGVGGIDSAEDAYEKIRAG-ASLVQIYS 319 (344)
T ss_pred EEECCCCCHHHHHHHHHcC-CCHHHHHH
Confidence 8888889999999888865 77766543
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.16 E-value=17 Score=35.74 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=45.4
Q ss_pred ccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.++||++-= ...+.+.++++++.+ ++.||+|-+... +..++++.++|+++|+.+-
T Consensus 72 ~~~vpv~lHlDH~~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ve 132 (281)
T PRK06806 72 QAKVPVAVHFDHGMTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVE 132 (281)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 5678887652 456788889999875 899999998873 6679999999999999863
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=80.05 E-value=22 Score=35.03 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=45.5
Q ss_pred ccC-CeEEEc-CCCCCHHHHHHHHHcCCccEEEecCCcch----HHHHHHHHHHHHHcCCeEE
Q 013681 302 TYG-ISVVAD-ESCRSLNDVQKVMQENLASVVNIKLAKFG----VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 302 ~~~-iPIa~d-Esl~~~~d~~~ll~~~a~d~i~lk~~~~G----i~~~~~~~~~A~~~gi~~~ 358 (438)
+.+ +||++- ....+.+.+++.++.+ ++.|++|.+... +..++++.++|+++|+.+.
T Consensus 71 ~~~~vpv~lhlDH~~~~e~i~~ai~~G-f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve 132 (282)
T TIGR01859 71 RMSIVPVALHLDHGSSYESCIKAIKAG-FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVE 132 (282)
T ss_pred HCCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 566 899887 4555778888999865 899999999875 5668999999999998654
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 438 | ||||
| 3u9i_A | 393 | The Crystal Structure Of Mandelate RacemaseMUCONATE | 7e-46 | ||
| 3ik4_A | 365 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 1e-45 | ||
| 3s5s_A | 389 | Crystal Structure Of Putative Mandelate RacemaseMUC | 3e-45 | ||
| 1jpm_A | 366 | L-ala-d/l-glu Epimerase Length = 366 | 2e-41 | ||
| 3dfy_A | 345 | Crystal Structure Of Apo Dipeptide Epimerase From T | 1e-37 | ||
| 2zad_A | 345 | Crystal Structure Of Muconate Cycloisomerase From T | 2e-35 | ||
| 3jva_A | 354 | Crystal Structure Of Dipeptide Epimerase From Enter | 2e-25 | ||
| 3q45_A | 368 | Crystal Structure Of Dipeptide Epimerase From Cytop | 2e-22 | ||
| 3r0k_A | 379 | Crystal Structure Of Nysgrc Enolase Target 200555, | 8e-18 | ||
| 2p88_A | 369 | Crystal Structure Of N-succinyl Arg/lys Racemase Fr | 3e-16 | ||
| 3iji_A | 338 | Structure Of Dipeptide Epimerase From Bacteroides T | 3e-15 | ||
| 2zc8_A | 369 | Crystal Structure Of N-Acylamino Acid Racemase From | 3e-14 | ||
| 3eez_A | 378 | Crystal Structure Of A Putative Mandelate RacemaseM | 1e-12 | ||
| 3rit_A | 356 | Crystal Structure Of Dipeptide Epimerase From Methy | 3e-12 | ||
| 1jpd_X | 324 | L-Ala-DL-Glu Epimerase Length = 324 | 7e-12 | ||
| 1wuf_A | 393 | Crystal Structure Of Protein Gi:16801725, Member Of | 1e-11 | ||
| 2ggg_A | 375 | The Mutant A68c-D72c Of Deinococcus Radiodurans N-A | 2e-11 | ||
| 2fkp_A | 375 | The Mutant G127c-T313c Of Deinococcus Radiodurans N | 2e-11 | ||
| 3i4k_A | 383 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 2e-11 | ||
| 1r0m_A | 375 | Structure Of Deinococcus Radiodurans N-Acylamino Ac | 2e-11 | ||
| 3dg3_A | 367 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 3e-11 | ||
| 2ggj_A | 375 | The Mutant Y218c Of Deinococcus Radiodurans N-Acyla | 5e-11 | ||
| 2ggi_A | 375 | The Mutant E149c-A182c Of Deinococcus Radiodurans N | 8e-11 | ||
| 3ct2_A | 382 | Crystal Structure Of Muconate Cycloisomerase From P | 1e-10 | ||
| 3muc_A | 369 | Muconate Cycloisomerase Variant I54v Length = 369 | 2e-10 | ||
| 3fcp_A | 381 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 2e-10 | ||
| 1bkh_A | 369 | Muconate Lactonizing Enzyme From Pseudomonas Putida | 2e-10 | ||
| 1muc_A | 373 | Structure Of Muconate Lactonizing Enzyme At 1.85 An | 2e-10 | ||
| 2muc_A | 373 | Muconate Cycloisomerase Variant F329i Length = 373 | 3e-10 | ||
| 1nu5_A | 370 | Crystal Structure Of Pseudomonas Sp. P51 Chloromuco | 4e-10 | ||
| 3qld_A | 388 | Structure Of Probable Mandelate Racemase (Aalaa1dra | 5e-10 | ||
| 3i6t_A | 381 | Crystal Structure Of Muconate Cycloisomerase From J | 1e-09 | ||
| 3ugv_A | 390 | Crystal Structure Of An Enolase From Alpha Pretobac | 1e-09 | ||
| 2chr_A | 370 | A Re-Evaluation Of The Crystal Structure Of Chlorom | 2e-09 | ||
| 2qde_A | 397 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 2e-09 | ||
| 1f9c_A | 372 | Crystal Structure Of Mle D178n Variant Length = 372 | 3e-09 | ||
| 2pgw_A | 384 | Crystal Structure Of A Putative Muconate Cycloisome | 7e-09 | ||
| 2qdd_A | 378 | Crystal Structure Of A Member Of Enolase Superfamil | 8e-09 | ||
| 4gfi_A | 329 | Crystal Structure Of Efi-502318, An Enolase Family | 1e-08 | ||
| 3i6e_A | 385 | Crystal Structure Of Muconate Lactonizing Enzyme Fr | 2e-08 | ||
| 3my9_A | 377 | Crystal Structure Of A Muconate Cycloisomerase From | 3e-08 | ||
| 4h1z_A | 412 | Crystal Structure Of Putative Isomerase From Sinorh | 4e-08 | ||
| 4h2h_A | 376 | Crystal Structure Of An Enolase (Mandalate Racemase | 4e-08 | ||
| 3t8q_A | 370 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 1e-07 | ||
| 3ddm_A | 392 | Crystal Structure Of Mandelate RacemaseMUCONATE Lac | 2e-07 | ||
| 2ppg_A | 399 | Crystal Structure Of Putative Isomerase From Sinorh | 3e-07 | ||
| 3bjs_A | 428 | Crystal Structure Of A Member Of Enolase Superfamil | 5e-07 | ||
| 2pmq_A | 377 | Crystal Structure Of A Mandelate RacemaseMUCONATE L | 1e-06 | ||
| 4h83_A | 388 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 2e-06 | ||
| 3ozm_A | 389 | Crystal Structure Of Enolase Superfamily Member Fro | 2e-06 | ||
| 3h12_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 2e-06 | ||
| 2rdx_A | 379 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 3e-06 | ||
| 3tcs_A | 388 | Crystal Structure Of A Putative Racemase From Roseo | 3e-06 | ||
| 3msy_A | 379 | Crystal Structure Of Mandelate RacemaseMUCONATE LAC | 3e-06 | ||
| 3no1_A | 398 | Crystal Structure Of Mandelate Racemase/muconate La | 3e-06 | ||
| 4ggb_A | 378 | Crystal Structure Of A Proposed Galactarolactone Cy | 4e-06 | ||
| 2nql_A | 388 | Crystal Structure Of A Member Of The Enolase Superf | 1e-05 | ||
| 4dn1_A | 408 | Crystal Structure Of An Enolase (Mandelate Racemase | 1e-05 | ||
| 4a35_A | 441 | Crystal Structure Of Human Mitochondrial Enolase Su | 1e-05 | ||
| 3op2_A | 397 | Crystal Structure Of Putative Mandelate Racemase Fr | 1e-05 | ||
| 2hzg_A | 401 | Crystal Stucture Of Predicted Mandelate Racemase Fr | 2e-05 | ||
| 3t9p_A | 388 | Crystal Structure Of A Putative Mandelate RacemaseM | 4e-05 | ||
| 2opj_A | 327 | Crystal Structure Of O-Succinylbenzoate Synthase Le | 8e-05 | ||
| 2oz8_A | 389 | Crystal Structure Of Putative Mandelate Racemase Fr | 8e-05 | ||
| 2ovl_A | 371 | Crystal Structure Of A Racemase From Streptomyces C | 1e-04 | ||
| 1wue_A | 386 | Crystal Structure Of Protein Gi:29375081, Unknown M | 1e-04 | ||
| 3rr1_A | 405 | Crystal Structure Of Enolase Prk14017 (Target Efi-5 | 3e-04 |
| >pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING Enzyme From Roseiflexus Sp. Length = 393 | Back alignment and structure |
|
| >pdb|3IK4|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING PROTEIN From Herpetosiphon Aurantiacus Length = 365 | Back alignment and structure |
|
| >pdb|3S5S|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM CELLULOSUM Length = 389 | Back alignment and structure |
|
| >pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase Length = 366 | Back alignment and structure |
|
| >pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From Thermotoga Maritima Length = 345 | Back alignment and structure |
|
| >pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Thermotoga Maritima Msb8 Length = 345 | Back alignment and structure |
|
| >pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus Faecalis V583 Length = 354 | Back alignment and structure |
|
| >pdb|3Q45|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val Length = 368 | Back alignment and structure |
|
| >pdb|3R0K|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A Putative Dipeptide Epimerase From Francisella Philomiragia : Tartrate Bound, No Mg Length = 379 | Back alignment and structure |
|
| >pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From Bacillus Cereus Atcc 14579 Length = 369 | Back alignment and structure |
|
| >pdb|3IJI|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides Thetaiotaomicron Complexed With L-Ala-D-Glu; Nonproductive Substrate Binding. Length = 338 | Back alignment and structure |
|
| >pdb|2ZC8|A Chain A, Crystal Structure Of N-Acylamino Acid Racemase From Thermus Thermophilus Hb8 Length = 369 | Back alignment and structure |
|
| >pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE Lactonizing Enzyme From Silicibacter Pomeroyi Length = 378 | Back alignment and structure |
|
| >pdb|3RIT|A Chain A, Crystal Structure Of Dipeptide Epimerase From Methylococcus Capsulatus Complexed With Mg And Dipeptide L-Arg-D-Lys Length = 356 | Back alignment and structure |
|
| >pdb|1JPD|X Chain X, L-Ala-DL-Glu Epimerase Length = 324 | Back alignment and structure |
|
| >pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of Enolase Superfamily From Listeria Innocua Clip11262 Length = 393 | Back alignment and structure |
|
| >pdb|2GGG|A Chain A, The Mutant A68c-D72c Of Deinococcus Radiodurans N-Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|3I4K|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Corynebacterium Glutamicum Length = 383 | Back alignment and structure |
|
| >pdb|1R0M|A Chain A, Structure Of Deinococcus Radiodurans N-Acylamino Acid Racemase At 1.3 : Insights Into A Flexible Binding Pocket And Evolution Of Enzymatic Activity Length = 375 | Back alignment and structure |
|
| >pdb|3DG3|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Mucobacterium Smegmatis Length = 367 | Back alignment and structure |
|
| >pdb|2GGJ|A Chain A, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|2GGI|A Chain A, The Mutant E149c-A182c Of Deinococcus Radiodurans N- Acylamino Acid Racemase Length = 375 | Back alignment and structure |
|
| >pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Pseudomonas Fluorescens Length = 382 | Back alignment and structure |
|
| >pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v Length = 369 | Back alignment and structure |
|
| >pdb|3FCP|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Klebsiella Pneumoniae Length = 381 | Back alignment and structure |
|
| >pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida Length = 369 | Back alignment and structure |
|
| >pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms Resolution Length = 373 | Back alignment and structure |
|
| >pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i Length = 373 | Back alignment and structure |
|
| >pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate Lactonizing Enzyme Length = 370 | Back alignment and structure |
|
| >pdb|3QLD|A Chain A, Structure Of Probable Mandelate Racemase (Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius Length = 388 | Back alignment and structure |
|
| >pdb|3I6T|A Chain A, Crystal Structure Of Muconate Cycloisomerase From Jannaschia Sp. Length = 381 | Back alignment and structure |
|
| >pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium Bal199 (Efi Target Efi-501650) With Bound Mg Length = 390 | Back alignment and structure |
|
| >pdb|2CHR|A Chain A, A Re-Evaluation Of The Crystal Structure Of Chloromuconate Cycloisomerase Length = 370 | Back alignment and structure |
|
| >pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1 Length = 397 | Back alignment and structure |
|
| >pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant Length = 372 | Back alignment and structure |
|
| >pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase From Sinorhizobium Meliloti 1021 Length = 384 | Back alignment and structure |
|
| >pdb|2QDD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Roseovarius Nubinhibens Ism Length = 378 | Back alignment and structure |
|
| >pdb|4GFI|A Chain A, Crystal Structure Of Efi-502318, An Enolase Family Member From Agrobacterium Tumefaciens With Homology To Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With Ordered Loop) Length = 329 | Back alignment and structure |
|
| >pdb|3I6E|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From Ruegeria Pomeroyi. Length = 385 | Back alignment and structure |
|
| >pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From Azorhizobium Caulinodans Length = 377 | Back alignment and structure |
|
| >pdb|4H1Z|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium Meliloti, Open Loop Conformation (Target Efi-502104) Length = 412 | Back alignment and structure |
|
| >pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase Subgroup, Target Efi-502101) From Pelagibaca Bermudensis Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine (Betonicine) Length = 376 | Back alignment and structure |
|
| >pdb|3T8Q|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME Family Protein From Hoeflea Phototrophica Length = 370 | Back alignment and structure |
|
| >pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE Lactonizing Enzyme From Bordetella Bronchiseptica Rb50 Length = 392 | Back alignment and structure |
|
| >pdb|2PPG|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium Meliloti Length = 399 | Back alignment and structure |
|
| >pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From Polaromonas Sp. Js666 Length = 428 | Back alignment and structure |
|
| >pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Sp. Htcc2601 Length = 377 | Back alignment and structure |
|
| >pdb|4H83|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME (Efi Target:502127) Length = 388 | Back alignment and structure |
|
| >pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From Bordetella Bronchiseptica Complexed With Mg, M-Xylarate And L-Lyxarate Length = 389 | Back alignment and structure |
|
| >pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Length = 397 | Back alignment and structure |
|
| >pdb|2RDX|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From Roseovarius Nubinhibens Ism Length = 379 | Back alignment and structure |
|
| >pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter Denitrificans Length = 388 | Back alignment and structure |
|
| >pdb|3MSY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE LACTONIZING ENZYME From A Marine Actinobacterium Length = 379 | Back alignment and structure |
|
| >pdb|3NO1|A Chain A, Crystal Structure Of Mandelate Racemase/muconate Lactonizing Enzyme From A Marine Actinobacterium In Complex With Magnesium Length = 398 | Back alignment and structure |
|
| >pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone Cycloisomerase From Agrobacterium Tumefaciens, Target Efi-500704, With Bound Ca, Disordered Loops Length = 378 | Back alignment and structure |
|
| >pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily From Agrobacterium Tumefaciens Length = 388 | Back alignment and structure |
|
| >pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase Subgroup Member) From Agrobacterium Tumefaciens (Target Efi-502088) With Bound Mg And Formate Length = 408 | Back alignment and structure |
|
| >pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase Superfamily Member 1 (Enosf1) Length = 441 | Back alignment and structure |
|
| >pdb|3OP2|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Bordetella Bronchiseptica Rb50 Complexed With 2-OxoglutaratePHOSPHATE Length = 397 | Back alignment and structure |
|
| >pdb|2HZG|A Chain A, Crystal Stucture Of Predicted Mandelate Racemase From Rhodobacter Sphaeroides Length = 401 | Back alignment and structure |
|
| >pdb|3T9P|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE Lactonizing Enzyme Family Protein From Roseovarius Length = 388 | Back alignment and structure |
|
| >pdb|2OPJ|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase Length = 327 | Back alignment and structure |
|
| >pdb|2OZ8|A Chain A, Crystal Structure Of Putative Mandelate Racemase From Mesorhizobium Loti Length = 389 | Back alignment and structure |
|
| >pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces Coelicolor A3(2) Length = 371 | Back alignment and structure |
|
| >pdb|1WUE|A Chain A, Crystal Structure Of Protein Gi:29375081, Unknown Member Of Enolase Superfamily From Enterococcus Faecalis V583 Length = 386 | Back alignment and structure |
|
| >pdb|3RR1|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653) From Ralstonia Pickettii 12j Length = 405 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} Length = 365 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = e-100
Identities = 116/354 (32%), Positives = 178/354 (50%), Gaps = 8/354 (2%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKA 125
+Q +N+ L+ P ++ + NV ++V+L++G +G GE A P V+G+ QT
Sbjct: 7 IQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGT 66
Query: 126 LVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
+ L + + + A R G+EMA++DA+ +PL
Sbjct: 67 SAAIERLQSHLLGADVRGWRKLAAMLDHAEHEAAAA--RCGLEMAMLDALTRHYHMPLHV 124
Query: 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIHAV 244
FGG S L T +TI A A+ A G ++K+ ++ D L+AIH
Sbjct: 125 FFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGVDVAYDLARLRAIHQA 184
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
P I+D N GY E A+ + VLFEQP+ R+DW+G+ V G
Sbjct: 185 APTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFEQPLPREDWAGMAQV----TAQSG 240
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIE 364
+V ADES RS +DV ++ +E ASV+NIKL K GV L++I + +GL LMI GM+E
Sbjct: 241 FAVAADESARSAHDVLRIAREGTASVINIKLMKAGVAEGLKMIAIAQAAGLGLMIGGMVE 300
Query: 365 TRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
+ LA F+ +LAAG G +++L+TP ++E PF+GG +G + G G
Sbjct: 301 SILAMSFSANLAAGNGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHG 354
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A Length = 345 | Back alignment and structure |
|---|
Score = 299 bits (767), Expect = 5e-99
Identities = 97/348 (27%), Positives = 161/348 (46%), Gaps = 8/348 (2%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ + P + S NV + + L +G G+GE + V G++ +AL
Sbjct: 4 IVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEAL 63
Query: 127 VKVREA-CQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
+ + A + + + R+ F S++A V+ A +DA++ + +
Sbjct: 64 LAIENAVREMITGIDVRNYARIFEITDRLFG---FPSLKAAVQFATLDALSQELGTQVCY 120
Query: 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH 245
L GG + + T T+ + + A K + GF +K+ VG N+ D + ++ I V
Sbjct: 121 LLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVT 180
Query: 246 PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305
+I+DAN GYT +EAVE + G+ ++EQPV R+D GL V R
Sbjct: 181 RGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFV----RFHSPF 236
Query: 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIET 365
V ADES R+ DV ++++E VNIKL K G+ L I++ SGL LMI M E+
Sbjct: 237 PVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGES 296
Query: 366 RLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN 413
L ++H A G G ++ +L++ +L E+ F G G +
Sbjct: 297 SLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKD 344
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} Length = 389 | Back alignment and structure |
|---|
Score = 300 bits (770), Expect = 6e-99
Identities = 125/355 (35%), Positives = 179/355 (50%), Gaps = 8/355 (2%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKA 125
++R L++ L P + + E N+ + VEL++G +G+GE A +P G+ Q +
Sbjct: 7 IRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGS 66
Query: 126 LVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
+ + S + G + R +E A++DA+ +PLW
Sbjct: 67 RAAAVSLREAVVGSDARAWRAVARALREASGGG-AGAARCAIETAILDALTKRAGMPLWA 125
Query: 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIHAV 244
FGG+ +L+T ITI SP A E A + +GF LK+ VG +D ++AIHA
Sbjct: 126 FFGGSGTALTTDITITTGSPERAEEAARRAAAMGFRALKVKVGGRLAASDPARIEAIHAA 185
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
P S ILD N G T+ EA+ ++ +G L EQPV RDDW G+ +V G
Sbjct: 186 APGASLILDGNGGLTAGEALALVAHARRLGADVALLEQPVPRDDWDGMKEV----TRRAG 241
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIE 364
+ V ADES S DV +V E A+VVNIKL K G+ L I R +GL LMI GM+E
Sbjct: 242 VDVAADESAASAEDVLRVAAERAATVVNIKLMKGGIAEALDIAAVARAAGLGLMIGGMVE 301
Query: 365 TRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNAR-GQG 418
+ LA + AAGLG +V+L+TP L+E+PF GG G + R G G
Sbjct: 302 SVLAMTASACFAAGLGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHG 356
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} Length = 393 | Back alignment and structure |
|---|
Score = 297 bits (762), Expect = 9e-98
Identities = 121/379 (31%), Positives = 183/379 (48%), Gaps = 19/379 (5%)
Query: 51 RTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWG 110
+L F+++T ++ L++ L P + + E N+ + VEL++G G+G
Sbjct: 15 TENLYFQSMTAP--TTIRALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELTDGTRGYG 72
Query: 111 EVAVVPLVTGD-QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEM 169
E A P G+ Q A + A + + + + + A R +E
Sbjct: 73 EAAPFPAFNGETQDMAHAAILAARSLVEGADVREWRRIALALPALPGMTGSA--RCAIET 130
Query: 170 ALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG- 228
A++DA+ +PLW FGGA+ SL T +TI S A+ A G +T+K+ +G
Sbjct: 131 AILDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARGVTTIKIKIGA 190
Query: 229 --------RNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280
R + D + AI V P ILD N GYT+ +A+ +L L G++P LF
Sbjct: 191 GDPDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVPALF 250
Query: 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGV 340
EQPV +DD GL + T + V ADES S D ++ + V+NIKL K G+
Sbjct: 251 EQPVAKDDEEGLRRL----TATRRVPVAADESVASATDAARLARNAAVDVLNIKLMKCGI 306
Query: 341 LGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVG 400
+ L I R +GLHLMI GM+E+ LA + AAG G ++V+L+TP L+E+PF G
Sbjct: 307 VEALDIAAIARTAGLHLMIGGMVESLLAMTVSACFAAGQGGFRFVDLDTPLFLAENPFDG 366
Query: 401 GCEVSGAIYNFTNAR-GQG 418
G G + T G G
Sbjct: 367 GMTYHGGTIDLTLIEAGHG 385
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A Length = 356 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 3e-92
Identities = 90/357 (25%), Positives = 154/357 (43%), Gaps = 13/357 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ + R + L+ P + S+E ++N+ + + ++G +G G + VTG+ +A
Sbjct: 3 IADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEAC 62
Query: 127 VKV--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
+ +L TL E+A LP + A RA ++MAL D VA + +PL
Sbjct: 63 HAALDHDRLGWLMGRDIRTLPRLCRELAERLPAAPAA--RAALDMALHDLVAQCLGLPLV 120
Query: 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-A 243
+ G A +SL T++TI E A ++ LGF LK+ + + DF+ L+ +H
Sbjct: 121 EILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCGDEEQDFERLRRLHET 180
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
+ +D N+ Y + + + + ++G+ EQP L +
Sbjct: 181 LAGRAVVRVDPNQSYDRDGLLRLDRLVQELGI--EFIEQPFPAGRTDWLRAL----PKAI 234
Query: 304 GISVVADESCRSLNDVQKVMQENLA-SVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
+ ADES D + A + NIKL K G+ +I +G+ LM
Sbjct: 235 RRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGC 294
Query: 362 MIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
M E+R++ ALH A +Y++L+ F L+ D GG + T G G
Sbjct: 295 MDESRISIAAALHAALACPATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLG 351
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A Length = 366 | Back alignment and structure |
|---|
Score = 279 bits (715), Expect = 6e-91
Identities = 118/357 (33%), Positives = 171/357 (47%), Gaps = 11/357 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ R E + V L+ P L +V E+V +R+ +G VGWGE ++TGD ++
Sbjct: 3 IIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI 62
Query: 127 VKV--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
L L +I +L G+ A +A VEMAL D A +PL+
Sbjct: 63 ESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSA--KAAVEMALYDGWAQMCGLPLY 120
Query: 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIH- 242
++ GG ++L T T+ SP E + A Y K GF TLK+ VG+ +I D +Q I
Sbjct: 121 QMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRK 180
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
V LDAN+G+ +EAV + K+ D G+ L EQPVH+DD +GL V D
Sbjct: 181 RVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKV----TDA 236
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
++ADES + +V+Q A ++NIKL K G+ G +I G+ M+
Sbjct: 237 TDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGS 296
Query: 362 MIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
MIET+L A H AA I + + P +L D F GG SG+ + G G
Sbjct: 297 MIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* Length = 354 | Back alignment and structure |
|---|
Score = 277 bits (710), Expect = 2e-90
Identities = 99/344 (28%), Positives = 163/344 (47%), Gaps = 12/344 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKA 125
+++ R + L ++ L ++E+ ++ + +E G VG+GE +TG+
Sbjct: 3 IKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGT 62
Query: 126 LVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
L + Q + P + + + +I + A +A +++A D + +PL++
Sbjct: 63 LETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAA--KAAIDIACYDLMGQKAQLPLYQ 120
Query: 186 LFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AV 244
L GG N + T IT+ P ++ A + KLGF TLK+ VG I AD ++AI AV
Sbjct: 121 LLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAV 180
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
LDAN+ +T ++AV+ + L D + L EQPV R D GL V
Sbjct: 181 GFDIKLRLDANQAWTPKDAVKAIQALADYQI--ELVEQPVKRRDLEGLKYV----TSQVN 234
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMI 363
+++ADESC D +++++ V+NIKL K G+ L+I + +G+ MI M
Sbjct: 235 TTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMA 294
Query: 364 -ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
ET + A HLAA I +L+ F L P GG +
Sbjct: 295 EETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEA 338
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A Length = 368 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 3e-89
Identities = 84/344 (24%), Positives = 158/344 (45%), Gaps = 12/344 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKA 125
+ + E + V L P + L + + NV +R+ ++G +G+GE + + G+ A
Sbjct: 3 ITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTA 62
Query: 126 LVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
+ + + L + + + I+ G+ ++ +AL D A +PL+
Sbjct: 63 FIVGQYLAKGLIGTSCLDIVSNSLLMDAIIYGNSCI--KSAFNIALYDLAAQHAGLPLYA 120
Query: 186 LFGGASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-A 243
GG + + T T+ P + + A + K GF +K+ VG + D + ++ I A
Sbjct: 121 FLGGKKDKIIQTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGGSKELDVERIRMIREA 180
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
+ +DAN+G++ E A+E L L + E+PV R+ ++ L + R
Sbjct: 181 AGDSITLRIDANQGWSVETAIETLTLLEPYNI--QHCEEPVSRNLYTALPKI----RQAC 234
Query: 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGM 362
I ++ADESC + D ++++Q N+KL+K G+ L II+ ++ + + + G
Sbjct: 235 RIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGF 294
Query: 363 IETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
+E+RL A H+A I Y + +TP + DP GG
Sbjct: 295 LESRLGFTAAAHVALVSKTICYYDFDTPLMFEADPVRGGIVYQQ 338
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* Length = 379 | Back alignment and structure |
|---|
Score = 274 bits (702), Expect = 7e-89
Identities = 72/344 (20%), Positives = 149/344 (43%), Gaps = 11/344 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ + + + L + S +++++A+ + L NG G+G +TGD + +
Sbjct: 5 IIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGM 64
Query: 127 VKVREAC--QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
+ + S + L+ + + + A + +++A D +A DI +
Sbjct: 65 QYIIREIFAPVILGSDLSDYKQTLELAFKKVMFNSAA--KMAIDLAYHDLLAKEQDISVA 122
Query: 185 RLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-A 243
+L G +NS+ T ++I + AE + + F+ +K+ G + D +L+A+
Sbjct: 123 KLLGAKANSIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKALDNE 182
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
+ F DAN+G+ + + + ++N + + EQPV D + ++
Sbjct: 183 FSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQPVKYYDIKAMAEI----TKFS 238
Query: 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGM 362
I VVADES D ++V+ E +++NIKLAK G+L +I K +G+ M+ M
Sbjct: 239 NIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVGCM 298
Query: 363 IETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
+E+ A I +L+ +++D + +
Sbjct: 299 MESPAGILATASFALAED-ITVADLDPLDWVAKDLYSDYITFNE 341
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 Length = 324 | Back alignment and structure |
|---|
Score = 242 bits (619), Expect = 3e-77
Identities = 79/335 (23%), Positives = 131/335 (39%), Gaps = 27/335 (8%)
Query: 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALV 127
+ + E L P + S V + +E G G GE P +
Sbjct: 5 RTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMA 63
Query: 128 KVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187
Q + P +E+ +ILP + R ++ AL D A L L
Sbjct: 64 ------QIMSVVPQLEKGLTREELQKILPAG---AARNALDCALWDLAARRQQQSLADLI 114
Query: 188 GG-ASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP 246
G ++ TA T+ +P + + AS + G LK+ + + + + AI P
Sbjct: 115 GITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--LISERMVAIRTAVP 172
Query: 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306
+ I+DANE + +E L D+GV + EQP+ D + L + +
Sbjct: 173 DATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAAL------ENFIHPLP 224
Query: 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIET 365
+ ADESC + ++++ + +VNIKL K G+ L + R G LM+ M+ T
Sbjct: 225 ICADESCHTRSNLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCT 282
Query: 366 RLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVG 400
A AL L + + +L+ P L+ D
Sbjct: 283 SRAISAALPLVPQ---VSFADLDGPTWLAVDVEPA 314
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* Length = 367 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 5e-76
Identities = 70/347 (20%), Positives = 141/347 (40%), Gaps = 16/347 (4%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ ++ + PL V E+V +RV +G VG E P G+ +
Sbjct: 3 IVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGI 62
Query: 127 VKVREAC--QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
V V E L T A +AR G+ A +A ++MA+ DA+ S+ + +
Sbjct: 63 VAVIEQYFAPALIGLTLTEREVAHTRMART-VGNPTA--KAAIDMAMWDALGQSLRLSVS 119
Query: 185 RLFGGASNSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIH 242
+ GG ++ + + + P + +E G +T K+ VGR + D V++A+
Sbjct: 120 EMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRPVQLDTAVVRALR 179
Query: 243 -AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
+D N G+++ E++ + ++ D+ + + E+ DD +
Sbjct: 180 ERFGDAIELYVDGNRGWSAAESLRAMREMADLDL--LFAEELCPADDVLSRRRL----VG 233
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDG 361
+ +ADES + DV + + A+ ++IK A+ G G+ ++ GL +++
Sbjct: 234 QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGN 293
Query: 362 MIETRLATGFALHLAAGLGCIKY--VNLNTPFLLSEDPFVGGCEVSG 406
I+ ++ T + L+ +S+D ++S
Sbjct: 294 QIDGQIGTACTVSFGTAFERTSRHAGELSNFLDMSDDLLTVPLQISD 340
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* Length = 338 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 2e-75
Identities = 81/344 (23%), Positives = 152/344 (44%), Gaps = 22/344 (6%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK 128
+ + L ++ S +V + +E G G+GE A +P G+ ++++
Sbjct: 2 KMTFFPYELKLRHVFTVATYSRTTTPDVQVEIE-YEGVTGYGE-ASMPPYLGETVESVMN 59
Query: 129 VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188
+ + S P L L + + P A +A V++AL D V + P ++++G
Sbjct: 60 FLKKVNLEQFSDPFQLEDILSYVDSLSPKDTAA--KAAVDIALHDLVGKLLGAPWYKIWG 117
Query: 189 GASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPH 247
+ ST TI +P K C F+ LK+ +GR+ D ++++ I +
Sbjct: 118 LNKEKTPSTTFTIGIDTPDVVRAKT-KECAGLFNILKVKLGRD--NDKEMIETIRS-VTD 173
Query: 248 CSFILDANEGYTSEE-AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306
+DAN+G+ + A++++ L + G+ V+ EQP+ ++ + V +
Sbjct: 174 LPIAVDANQGWKDRQYALDMIHWLKEKGI--VMIEQPMPKEQLDDIAWV----TQQSPLP 227
Query: 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIET 365
V ADES + L DV + + +NIKL K G+ +++ G+ +M+ M ET
Sbjct: 228 VFADESLQRLGDVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGCMTET 285
Query: 366 RLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIY 409
A A + + + +L+ L+S D F G V+G I
Sbjct: 286 SCAISAASQFSPA---VDFADLDGNLLISNDRFKGVEVVNGKIT 326
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 Length = 393 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 2e-74
Identities = 75/348 (21%), Positives = 143/348 (41%), Gaps = 21/348 (6%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLV-----TGD 121
Q+A + L AP +++ + I + G G+GE+ PL T
Sbjct: 22 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLS 81
Query: 122 QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
++K + L Q + E+ + G+E A +A VE+A+ DA A
Sbjct: 82 SAILIIK-EQLLPLLAQRKIRKPE-EIQELFSWIQGNEMA--KAAVELAVWDAFAKMEKR 137
Query: 182 PLWRLFGGASNSLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGRNITADFDVLQA 240
L ++ G S+ ++I E +L ++Y G+ +KL + N D ++A
Sbjct: 138 SLAKMIGATKESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEA 195
Query: 241 IHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
+ P S + DAN Y E+ + L +L+ + + EQP D+ + +
Sbjct: 196 VRKSFPKLSLMADANSAYNREDFLL-LKELDQYDL--EMIEQPFGTKDFVDHAWL----Q 248
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMI 359
+ DE+ RS+ DV++ +N+KLA+ G+ L+I + + + +
Sbjct: 249 KQLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWC 308
Query: 360 DGMIETRLATGFALHLAAGLGCIKYVNLN-TPFLLSEDPFVGGCEVSG 406
GM+E + + LAA + +++ + +ED E++
Sbjct: 309 GGMLEAGVGRAHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQ 356
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* Length = 369 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 7e-74
Identities = 68/335 (20%), Positives = 142/335 (42%), Gaps = 14/335 (4%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK 128
+ + L P + S ++ ++ +++E G +G+GE VTG+ ++
Sbjct: 5 AIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFH 64
Query: 129 V--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
L P + D + + G A +A +++A D + ++ P+++L
Sbjct: 65 TLKHTLTPALIGQNPMNIEKIHDMMDNTIYGVPTA--KAAIDIACFDIMGKKLNQPVYQL 122
Query: 187 FGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AV 244
GG + P +E A+ + G+ + K+ VG N+ D ++A+ V
Sbjct: 123 IGGRYHEEFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERV 182
Query: 245 HPHCSFILDANEGYTS-EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
+ +D N+G+ + + L L + + EQPV DD + + R
Sbjct: 183 GNDIAIRVDVNQGWKNSANTLTALRSLGHLNI--DWIEQPVIADDIDAMAHI----RSKT 236
Query: 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGM 362
+ ++ DE +S +++++++ A VNIKL K G+ +++ +G+ + M
Sbjct: 237 DLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSM 296
Query: 363 IETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDP 397
+E+ +A+ H+A I V L P ++D
Sbjct: 297 VESSVASSAGFHVAFSKKIITSVELTGPLKFTKDI 331
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} Length = 377 | Back alignment and structure |
|---|
Score = 232 bits (594), Expect = 8e-73
Identities = 62/360 (17%), Positives = 120/360 (33%), Gaps = 35/360 (9%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKALV 127
R ++ P + + +R++ +G G GEV+++P ++ D + +
Sbjct: 6 ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRLD-IDGHGGQGEVSLIPGLSLDPEEQIGR 64
Query: 128 KVREACQFLRQSPPTTLNFALDEI---------------------ARILPGSEFASVRAG 166
++ + LR P L L E ++ F ++R
Sbjct: 65 ELDLLARRLRAEEPIRLRQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFA 124
Query: 167 VEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLN 226
+EMAL+D ++ F + I A E G+ LKL
Sbjct: 125 LEMALLDLLSGGRQEWFASDFTRGEKRIPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLK 184
Query: 227 VG-RNITADFDVLQAIHAVHP--HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQP 283
+G + + +L I +DAN ++ A + L +L+ + EQP
Sbjct: 185 IGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHL--HSIEQP 242
Query: 284 VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV--MQENLASVVNIKLAKF-GV 340
+ + WS + + +++ DE L Q+ + + +K + G
Sbjct: 243 IRQHQWSEMAAL----CANSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGF 298
Query: 341 LGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVG 400
Q I+ R+ G+ I +E+ L A L T L + +
Sbjct: 299 HYAGQWIELARERGIGFWITSALESNLGLAAIAQWTALYQPTMPQGLGTGQLYTNNLPSN 358
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A Length = 332 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 2e-70
Identities = 69/352 (19%), Positives = 117/352 (33%), Gaps = 31/352 (8%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK 128
R + R L PL+ + + +R+E G VG+GE+A +P +
Sbjct: 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLN---- 59
Query: 129 VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188
+Q P + I LP ++F A ++ P+ L G
Sbjct: 60 --ADIALCQQLPGHLTPEIMATIPEALPAAQFG--FATAWQSVGRLPYRVRPWPICALLG 115
Query: 189 GASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIH-AVHP 246
S A E + + G +T K VG + + +L+A+ A+ P
Sbjct: 116 ---------------SGQAALEQWQQSWQRGQTTFKWKVGVMSPEEEQAILKALLAALPP 160
Query: 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-EQPVHRDDWSGLHDVSNFARDTYGI 305
LDAN + A L+ G + + EQP+ D W L + T
Sbjct: 161 GAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYVEQPLPPDQWQALLSL----AQTVTT 216
Query: 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIET 365
++ DES S +VQ+ + IK A FG +L ++ L+ +E
Sbjct: 217 AIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPDSLSLLLRRGLEPQRLVFSSALEG 276
Query: 366 RLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQ 417
+A HL + P + ++ + G
Sbjct: 277 AIARTAIFHLLETWQPCHALGFGVDRWR-SAPLLTTLTAYERLWERLDQEGH 327
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 7e-70
Identities = 72/347 (20%), Positives = 137/347 (39%), Gaps = 20/347 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAV--VPLVTGD-QT 123
++ AE R L + L + +R+ G G GE + +PL +
Sbjct: 3 IEAAELRILELPLKFRFETSFGVQTKRTILLLRLF-GEGLEGLGEGVMERLPLYREETVA 61
Query: 124 KALVKVREACQ-FLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
A + E + + +A G+ A +A +EMA D A ++ P
Sbjct: 62 GARYLLEEVFLPRVLGRDLPNPEALREALAPF-RGNPMA--KAVLEMAFFDLWAKALGRP 118
Query: 183 LWRLFGGASNSLSTAITIP-AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI 241
LW++ GG ++ +++ S + + ++ + G+ +KL + D++VL+A+
Sbjct: 119 LWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHLEEGYRRIKLKIKPG--WDYEVLKAV 176
Query: 242 HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
P + DAN Y+ + L +L+++ + EQP+ DD + +
Sbjct: 177 REAFPEATLTADANSAYSLANLAQ-LKRLDELRL--DYIEQPLAYDDLLDHAKL----QR 229
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
+ DES +K ++ V N+K A+ G +L++ +G+ L +
Sbjct: 230 ELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMG 289
Query: 361 GMIETRLATGFALHLAAGLGCIKYVNL-NTPFLLSEDPFVGGCEVSG 406
GM+E + LHLA G K ++ + ED E
Sbjct: 290 GMLEAGVGRAHNLHLATLPGFTKPGDVSSASRYWEEDIVEEALEAKD 336
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A Length = 385 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 7e-70
Identities = 74/345 (21%), Positives = 126/345 (36%), Gaps = 15/345 (4%)
Query: 69 RAEGRELNVALSAPLSLGLSSVEN-VENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKAL 126
+ L + + + G+ VE E V +R+ G G+GE + + TG +
Sbjct: 12 AMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFTGTPEASYA 71
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
R + +DE AR + A +A ++ AL+D ++P+W L
Sbjct: 72 ALDRYLRPLVIGRRVGDRVAIMDEAARAVAHCTEA--KAALDSALLDLAGRISNLPVWAL 129
Query: 187 FGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIHAV 244
GG +++ + +I L + G +KL G R+ D L+ I
Sbjct: 130 LGGKCRDTIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARD 189
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
P +D N+G +EAV + + EQPV + + + R
Sbjct: 190 FPEFRVRVDYNQGLEIDEAVPRVLDVAQFQP--DFIEQPVRAHHFELMARL----RGLTD 243
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMI 363
+ ++ADES D+ + E + V+IK+ K G+ + + GL M
Sbjct: 244 VPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMF 303
Query: 364 ETRLATGFALHLAAGLGCIKYVN--LNTPFLLSEDPFVGGCEVSG 406
E LA H+ A I + L+ED V
Sbjct: 304 EAGLAHLAGTHMIAATPEITLGCEFYQASYFLNEDILETPFRVEA 348
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} Length = 388 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 1e-69
Identities = 76/349 (21%), Positives = 139/349 (39%), Gaps = 26/349 (7%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAV--VPLVTG---D 121
+Q L++ L P+ + + + +++ ++G GW E P T D
Sbjct: 3 LQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTD 62
Query: 122 QTKALVKVREACQFLRQSPPTTLN-----FALDEIARILPGSEFASVRAGVEMALIDAVA 176
++ +F R + + + E R + G+ + A +EMA+ D A
Sbjct: 63 TAWVMLVHHLVPRFARWLRAASQDQDVDPRTVCEALRDVRGNRMS--VAAIEMAVWDWYA 120
Query: 177 NSIDIPLWRLFGGASNSLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGRNITADF 235
PL L GG + + + T+ + + + GF +KL + D
Sbjct: 121 ARTGQPLVGLLGGGRDRVEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIAPG--RDR 178
Query: 236 DVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
++A+ +P + DAN Y E+A VL +L+ + EQP+ DDW L +
Sbjct: 179 AAIKAVRLRYPDLAIAADANGSYRPEDA-PVLRQLDAYDL--QFIEQPLPEDDWFDLAKL 235
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSG 354
+ + V DES RS+ +++ + A V+N+K + G TL+ + ++G
Sbjct: 236 ----QASLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAG 291
Query: 355 LHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPF--LLSEDPFVGG 401
+ + GM ET + L AA L ++Y P +D
Sbjct: 292 MAAWVGGMYETGVGRVHGLIAAA-LPLMRYATDLGPSDRYFEQDVLKEP 339
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 3e-69
Identities = 61/348 (17%), Positives = 121/348 (34%), Gaps = 21/348 (6%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLV-----TGD 121
+Q E ++ + L P +E + G G+GE+ T
Sbjct: 22 IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 81
Query: 122 QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
+ +++ + L + I + G +A +E A+ D A
Sbjct: 82 TERFIIQ-QHLIPLLLTEAIEQPQ-EVSTIFEEVKGHWMG--KAALETAIWDLYAKRQQK 137
Query: 182 PLWRLFGGASNSLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGRNITADFDVLQA 240
L FG + I++ + + G+ +KL + D + +
Sbjct: 138 SLTEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPG--YDVEPVAL 195
Query: 241 IHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
I P+ ++DAN YT + + L +L+ + + EQP DD+ + +
Sbjct: 196 IRQHFPNLPLMVDANSAYTLADLPQ-LQRLDHYQL--AMIEQPFAADDFLDHAQL----Q 248
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMI 359
+ DE+ RSL D Q + +N+K+ + G+ L+I +++ L + +
Sbjct: 249 RELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWL 308
Query: 360 DGMIETRLATGFALHLAAGLGCIKYVNL-NTPFLLSEDPFVGGCEVSG 406
GM E+ + L A+ ++ T ED +
Sbjct: 309 GGMFESGVGRALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQ 356
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} Length = 381 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 5e-69
Identities = 77/350 (22%), Positives = 146/350 (41%), Gaps = 19/350 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG-----D 121
V++ E ++V P L ++++ V +R+ S+G G GE + ++ +
Sbjct: 7 VEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPE 66
Query: 122 QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
+ + L+ P LN + + G+ FA ++ +E AL+DA ++ +
Sbjct: 67 AISSAIT-HYLTPLLKGQPADNLNALTARMNGAIKGNTFA--KSAIETALLDAQGKALGL 123
Query: 182 PLWRLFGGAS-NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVL 238
P+ L GGA +L T+ + A+ +E + KL +G R + D
Sbjct: 124 PVSALLGGALQTALPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGARELATDLRHT 183
Query: 239 QAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297
+AI A+ S +D N+ + + + +L MGV L EQPV D + L +
Sbjct: 184 RAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGV--DLIEQPVSAHDNAALVRL-- 239
Query: 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLH 356
+++ADE+ + D ++ Q+ +K+AK G L + + + +G+
Sbjct: 240 --SQQIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIG 297
Query: 357 LMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
L M+E + T +LH + L + P LL +D +
Sbjct: 298 LYGGTMLEGTVGTVASLHAWSTLPLQWGTEMFGPLLLKDDIVSVPLTFAD 347
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A Length = 382 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 1e-66
Identities = 82/351 (23%), Positives = 150/351 (42%), Gaps = 20/351 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLV-----TGD 121
++ E +++ P L + +++N V IR+ ++G G GE + + + D
Sbjct: 8 IESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPD 67
Query: 122 QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
K + R L + +N A+ + + + G+ FA ++G+E AL+DA + +
Sbjct: 68 SIKTNID-RFVAPLLIGQDASNINAAMLRLEQSIRGNTFA--KSGIESALLDAQGKRLGL 124
Query: 182 PLWRLFGGAS-NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVGR-NITADFDVL 238
P+ L GG ++L A T+ + A+ +E KL +G + D +
Sbjct: 125 PVSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAGEVDRDLAHV 184
Query: 239 QAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297
AI A+ S +D N+ + A+ L G+ L EQP+ R++ +G+ +
Sbjct: 185 IAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGI--DLIEQPISRNNRAGMVRL-- 240
Query: 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLH 356
+ ++ADES + D + +E ASV +K+AK G TL+ +G+
Sbjct: 241 --NASSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIG 298
Query: 357 LMIDGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSG 406
L M+E + T + H L + + L P LL+ED
Sbjct: 299 LYGGTMLEGGIGTLASAHAFLTLNKLSWDTELFGPLLLTEDILAEPPVYRD 349
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 Length = 370 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 9e-66
Identities = 79/349 (22%), Positives = 154/349 (44%), Gaps = 21/349 (6%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLV-----TGDQT 123
++V PL + ++V V ++V+ + G VG GE V + +
Sbjct: 5 AISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWGSESAETI 63
Query: 124 KALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPL 183
K ++ A L + L+ A + R + G+ A +A +++AL D A ++++ +
Sbjct: 64 KVIIDNYLA-PLLVGKDASNLSQARVLMDRAVTGNLSA--KAAIDIALHDLKARALNLSI 120
Query: 184 WRLFGGAS-NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVLQA 240
L GG S+ A T+ + A + K+ +G R D + +++
Sbjct: 121 ADLIGGTMRTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRS 180
Query: 241 IH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299
I AV S +D N+G+ + A + +L + GV L EQPV R ++ L +
Sbjct: 181 IVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGV--ELVEQPVPRANFGALRRL---- 234
Query: 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLM 358
+ G++++ADES SL+ ++ +++ ++KL G+ TL++ +G+
Sbjct: 235 TEQNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSY 294
Query: 359 IDGMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGGCEVSG 406
M+++ + T ALH+ A L + Y L P++L + E+
Sbjct: 295 GGTMLDSTVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKD 343
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* Length = 368 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 6e-65
Identities = 68/347 (19%), Positives = 129/347 (37%), Gaps = 20/347 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK 124
+ E R + + L AP + E + +R G GWGE + PL + +
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYND 61
Query: 125 ALVKV--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
V L + T + + G A + +EMA++DA + +
Sbjct: 62 GAEHVLRHYLIPALLAAEDITAA-KVTPLLAKFKGHRMA--KGALEMAVLDAELRAHERS 118
Query: 183 LWRLFGGASNSLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI 241
G +S+ +++ + + + ++ Y G+ +KL + D + ++A+
Sbjct: 119 FAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPG--WDVEPVRAV 176
Query: 242 H-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
+DAN YT +A + L +L+ G+ +L EQP+ +D G ++
Sbjct: 177 RERFGDDVLLQVDANTAYTLGDAPQ-LARLDPFGL--LLIEQPLEEEDVLGHAEL----A 229
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMI 359
+ DES S ++ +VNIK + G L ++ G+ +
Sbjct: 230 RRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWC 289
Query: 360 DGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
GMIET L + LA+ + + + +SG
Sbjct: 290 GGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSG 336
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} Length = 383 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 8e-65
Identities = 84/350 (24%), Positives = 148/350 (42%), Gaps = 18/350 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK 124
+Q+ E R L+V L P ++ + + V L NG +G+GE V P G+ +
Sbjct: 8 IQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVE 67
Query: 125 ALVKVREAC--QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
+ + + L + L + ++ R++ + +A +A V++A+ DA A S+++P
Sbjct: 68 TMKALVDGYLAPVLIGRAVSELAGIMADLERVVARARYA--KAAVDVAMHDAWARSLNVP 125
Query: 183 LWRLFGGAS-NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVLQ 239
+ L GG + + + + +E+ + + G + KL +G + D +
Sbjct: 126 VRDLLGGTVRDKVDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAGDPAEDTRRVA 185
Query: 240 AIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298
+ V S +D N + A+ L L + GV LFEQP DD L ++
Sbjct: 186 ELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGV--ELFEQPTPADDLETLREI--- 240
Query: 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357
+SV+ADES + + V++ A V+ +K K G+L + +I GL
Sbjct: 241 -TRRTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLAC 299
Query: 358 MIDGMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGGCEVSG 406
+E + T +L AA I Y L P LL + V E
Sbjct: 300 HGATSLEGPIGTAASLQFAASTKAISYGTELFGPQLLKDTYIVQEFEYKD 349
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} Length = 378 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 2e-64
Identities = 75/341 (21%), Positives = 136/341 (39%), Gaps = 19/341 (5%)
Query: 69 RAEGRELNVALSAP--LSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
R ++++ L P LS G E ++ +++E G GWGE
Sbjct: 7 RITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPG 66
Query: 127 VK--VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
++ + F+ P L + LPG +A ++ ++MA D + +P+
Sbjct: 67 IRAGIETMAPFVLGLDPRRLLDVERAMDIALPGHLYA--KSPIDMACWDIAGQAAGLPIA 124
Query: 185 RLFGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH- 242
L GG S A ++ A S E + +Y + G+ + +G ++ D ++ +
Sbjct: 125 DLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVED 184
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
P + D N G+T ++A+ V+ D+ V+FEQP + + R
Sbjct: 185 IREPGEIVLYDVNRGWTRQQALRVMRATEDLH---VMFEQPGE--TLDDIAAI----RPL 235
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
+ V DE +L D +V ++ LA V IKL + G+ ++ G+ + +
Sbjct: 236 HSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVMA 295
Query: 362 MIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGG 401
+ LA ALHLAA + +L+ D G
Sbjct: 296 TGGSVLADAEALHLAATIPDHACHAVWACQDMLTVDIAGGR 336
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} Length = 397 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 4e-64
Identities = 69/356 (19%), Positives = 138/356 (38%), Gaps = 26/356 (7%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVA-VVPLVTG---DQTK 124
+ E ++ + + +++ ++ V +++ G VG + G D
Sbjct: 7 KVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSIT 66
Query: 125 ALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
+++ A + L PT + + + + + A +A V+ AL D V +P++
Sbjct: 67 SMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQA--KATVDFALHDLVGKRFGVPVY 124
Query: 185 RLFGGASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH- 242
+L GG + + + + A P +E A + GF +KL G + AD ++ +
Sbjct: 125 QLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRR 184
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
AV +D N +T ++A+ + L EQP+ D G+ + R
Sbjct: 185 AVGDDVDLFIDINGAWTYDQALTTIRALEKYN--LSKIEQPLPAWDLDGMARL----RGK 238
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
+ ADES + L+D+ ++ + A + IK K G+L + + R + L ++
Sbjct: 239 VATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGC 298
Query: 362 MIETRLATGFALHLAAGL-----------GCIKYVNLNTPFLLSEDPFVGGCEVSG 406
M+ + L A HL A G + + + D + G
Sbjct: 299 MVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEG 354
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} SCOP: c.1.11.2 d.54.1.1 PDB: 2chr_A Length = 370 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 5e-63
Identities = 79/348 (22%), Positives = 154/348 (44%), Gaps = 19/348 (5%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKAL 126
E ++V P+ + +++V V +RV S G VG GE V P+ + + + +
Sbjct: 5 AIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETI 63
Query: 127 VKVREAC--QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
+ E L + ++ AL +AR + G+ A +A VEMAL+D A ++ + +
Sbjct: 64 KIIVERYLAPHLLGTDAFNVSGALQTMARAVTGNASA--KAAVEMALLDLKARALGVSIA 121
Query: 185 RLFGGAS-NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVLQAI 241
L GG +++ A T+ + + + K+ +G R+ D ++A+
Sbjct: 122 ELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEAL 181
Query: 242 H-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
++ +D N+ + + A + +L +GV L EQPV R++ L +
Sbjct: 182 SNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGV--ELIEQPVGRENTQALRRL----S 235
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMI 359
D ++++ADES +L + ++ V ++KL GV T +I SG+
Sbjct: 236 DNNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYG 295
Query: 360 DGMIETRLATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSG 406
M+++ + T AL L + + + + L PF+L++ E+
Sbjct: 296 GTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRD 343
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A Length = 375 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 5e-61
Identities = 65/347 (18%), Positives = 126/347 (36%), Gaps = 20/347 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK 124
++ AE + L V+ + V + + G G E + P+ +
Sbjct: 10 IEAAEIVVARLPLKFRFETSFG-VQTHKVVPLLILHGEGVQGVAEGTMEARPMYREETIA 68
Query: 125 ALVKVREAC--QFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
+ + + D + G+ A RA VEMA D A ++ +P
Sbjct: 69 GALDLLRGTFLPAILGQTFANPEAVSDALGSY-RGNRMA--RAMVEMAAWDLWARTLGVP 125
Query: 183 LWRLFGGASNSLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGRNITADFDVLQAI 241
L L GG + +++ + +A +L ++ + G+ +KL + D ++A
Sbjct: 126 LGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPG--WDVQPVRAT 183
Query: 242 HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
P +DAN YT +A L +L++ + EQP+ DD ++
Sbjct: 184 REAFPDIRLTVDANSAYTLADAGR-LRQLDEYDL--TYIEQPLAWDDLVDHAEL----AR 236
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
+ DES S +D +K + V+N+K+A+ G + ++ + G +
Sbjct: 237 RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCG 296
Query: 361 GMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSG 406
GM+E+ + +HL+ + D E
Sbjct: 297 GMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVD 343
|
| >2pmq_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, isomerase, PSI-2; HET: MSE; 1.72A {Roseovarius SP} Length = 377 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 6e-61
Identities = 60/348 (17%), Positives = 134/348 (38%), Gaps = 22/348 (6%)
Query: 69 RAEGRELNVALS-APLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALV 127
+ + ++ + P + V ++ +++ +G +GWGE V +
Sbjct: 7 EIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGA 66
Query: 128 K--VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWR 185
+ L + L + +L G +A ++ +++A+ D + +P+
Sbjct: 67 LAALEVLASGLAGAEALPLP-LHTRMDSLLCGHNYA--KSALDIAVHDLWGKRLGVPVHE 123
Query: 186 LFGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAI-- 241
L GGA +S+S+ ++ + P EA+ A + + G+S L++ +G I D + ++ +
Sbjct: 124 LLGGALTDSVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWE 183
Query: 242 HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
+ D N G+T+ +A+ + D+ + EQP + + L + R
Sbjct: 184 AVRGTGIALAADGNRGWTTRDALRFSRECPDIPF---VMEQPCN--SFEDLEAI----RP 234
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
++ DE SLN V +L +K+++ G+ L D
Sbjct: 235 LCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCD 294
Query: 361 GMIETRLATGFALHLAAGLG--CIKYVNLNTPFLLSEDPFVGGCEVSG 406
+ + H+A+ + ++ L P++ G + G
Sbjct: 295 DAWGGDIVSAACTHIASTVLPRLMEGAWLAQPYVAEHYDAENGVRIEG 342
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} Length = 400 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 3e-60
Identities = 65/353 (18%), Positives = 128/353 (36%), Gaps = 36/353 (10%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTG---D 121
+ E+ + + P + + ++ + + G+GE A P G +
Sbjct: 9 IDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIR-EGDLFGYGESAPFEEPFYLGETLE 67
Query: 122 QTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDI 181
TK ++K + P ++ I + G+ FA R GVE A D +A I
Sbjct: 68 TTKVILK-NHLLPMILGKEPLSIEEFNHLIKNGIRGNHFA--RCGVENAYWDLIAKKNKI 124
Query: 182 PLWRLFGGA-------------SNSLSTAITIPAVSPAEASEL---ASKYCKLGFSTLKL 225
L + +N + + + L + + G+ +K+
Sbjct: 125 SLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQVEESLQEGYRRIKI 184
Query: 226 NVGRNITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV 284
+ D + LQ AV H DAN + ++ E ++ + EQP+
Sbjct: 185 KIKPG--WDVEPLQETRRAVGDHFPLWTDANSSFELDQW-ETFKAMDAAKC--LFHEQPL 239
Query: 285 HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGT 343
H + L ++ + + DES S + V + ++++ NIK+ + G+L
Sbjct: 240 HYEALLDLKEL----GERIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEA 295
Query: 344 LQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSED 396
++I K +G+ L M E+ L F + LA+ G + ++
Sbjct: 296 IKIYKIATDNGIKLWGGTMPESGLGARFLISLASFRGFVFPADVAASEKWYGK 348
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} Length = 391 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 6e-60
Identities = 57/355 (16%), Positives = 124/355 (34%), Gaps = 29/355 (8%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
+ D+ + P ++ S+V +++ +++ +G GWGE V
Sbjct: 29 HVYAHDLPVKD---------GPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYA 79
Query: 121 DQTKALVK--VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANS 178
+ + E L + P + +L G +A +A +++A D +
Sbjct: 80 PSHALGARAALAEMAPGLIGANPLQPLVLRRRMDGLLCGHNYA--KAAIDIAAYDLMGKH 137
Query: 179 IDIPLWRLFGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFD 236
+ + L GG + + + P E + +A++ GF L++ +G + D +
Sbjct: 138 YGVRVADLLGGVAAERVPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGRPVEIDIE 197
Query: 237 VLQAIHA--VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHD 294
++ + +D N S +A+ + + + IP + EQP + +
Sbjct: 198 TVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPE---IPFVLEQPC--NTLEEIAA 252
Query: 295 VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS 353
+ R + DES L+ V + + L +KL + G+
Sbjct: 253 I----RGRVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEAR 308
Query: 354 GLHLMIDGMIETRLATGFALHLAAGLG--CIKYVNLNTPFLLSEDPFVGGCEVSG 406
L D + H+ A + + V + P++ G ++G
Sbjct: 309 ALPHSCDDAWGGDIIAAACTHIGATVQPRLNEGVWVAQPYIAQPYDEENGIRIAG 363
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B Length = 378 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 1e-59
Identities = 74/342 (21%), Positives = 124/342 (36%), Gaps = 21/342 (6%)
Query: 69 RAEGRELNVALSAP--LSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
R L++ L+ P LS G + +++ +R++ G GWGE
Sbjct: 7 RLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPG 66
Query: 127 VK--VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
++ + L P +L+ + LPG + ++ ++MA D + +PLW
Sbjct: 67 LRAGIATLAPHLLGLDPRSLDHVNRVMDLQLPGHSYV--KSPIDMACWDILGQVAGLPLW 124
Query: 185 RLFGGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIH 242
+L GG + + +I +P + L ++ G+ T +G + D ++AI
Sbjct: 125 QLLGGEAATPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAIS 184
Query: 243 -AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
+ D N +T AVEVL + EQP D V
Sbjct: 185 AGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD----WIEQPCQTLD--QCAHV----AR 234
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
++ DE +D V IK + G+ QI G + I+
Sbjct: 235 RVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIE 294
Query: 361 GMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGG 401
+ T LA ALHLAA + L++DP G
Sbjct: 295 DVGGTALADTAALHLAASTPEANRLASWLGHAHLADDPIPGQ 336
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} Length = 377 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 1e-58
Identities = 71/348 (20%), Positives = 131/348 (37%), Gaps = 16/348 (4%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVEN-VENVAIRVELSNGCVGWGEVAVVPLVTGD-QTK 124
V+R + + G+ +V+ V+ V + V ++G VGWGE A + TG +
Sbjct: 8 VERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEVFTGTPEAA 67
Query: 125 ALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
+ +P + + + ++L G A +A VEMAL+D + + + +
Sbjct: 68 FSALDIYLRPLILGAPIKRVRELMARMDKMLVGHGEA--KAAVEMALLDILGKATGLSVA 125
Query: 185 RLFGGASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIH 242
L GG + + +I E G + K+ G + +L+ +
Sbjct: 126 DLLGGRVRDRIPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVKPHAEELRILETMR 185
Query: 243 -AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
LD N+ T A+++L ++ P EQPV R +
Sbjct: 186 GEFGERIDLRLDFNQALTPFGAMKILRDVDAFR--PTFIEQPVPRRHLDAMAGF----AA 239
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
++ADESC D+ +V++ A +++K+ K G++ ++ +GL
Sbjct: 240 ALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGG 299
Query: 361 GMIETRLATGFALHLAAGLGCIKYVN-LNTPF-LLSEDPFVGGCEVSG 406
+ E +A L A I P +L+ED S
Sbjct: 300 TLWEGGIALAAGTQLIAATPGISLGCEFYMPHHVLTEDVLEERIANSA 347
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} Length = 379 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 3e-57
Identities = 59/352 (16%), Positives = 121/352 (34%), Gaps = 25/352 (7%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
+ D+ +G A + ++ + ++ G G GE
Sbjct: 9 RLYKTDLPYVDGSYGWGAGN--------AITVARASVVVIDTDAGLQGCGEFTPCGENYM 60
Query: 121 DQTKALVKV--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANS 178
V R A L P + + ++ G +A +A + A D + +
Sbjct: 61 IAHSEGVDAFARLAAPQLLGQDPRQVARMERLMDHLVQGHGYA--KAPFDAAFWDILGQA 118
Query: 179 IDIPLWRLFGGASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDV 237
P+W L GG P S AE +++ G+ ++ VG + +D D
Sbjct: 119 TGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGADWQSDIDR 178
Query: 238 LQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296
++A + P + DAN+G+ + A+ + D+ + EQP + V
Sbjct: 179 IRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLD---YILEQPCRSYE--ECQQV- 232
Query: 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGL 355
R + DE L+ Q+++ + A + +K++ G+ + + +
Sbjct: 233 ---RRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRM 289
Query: 356 HLMIDGMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGGCEVSG 406
++ + +A+ H AA +N + + +GG V
Sbjct: 290 PVVAEDSWGGEIASAAVAHFAASTPEEFLINSTDLMNYNTRSTGLGGPTVHQ 341
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A Length = 386 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 3e-57
Identities = 60/357 (16%), Positives = 125/357 (35%), Gaps = 29/357 (8%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
+ D+ G G + + + +E G GWGE
Sbjct: 9 DIHRTDLPVRGGV--------YRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYI 60
Query: 121 DQTKALVKV--REACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANS 178
+ + P + D + L G A RA +++A D A +
Sbjct: 61 AAHAGGTRAALELLAPAILGMDPRQHDRIWDRMRDTLKGHRDA--RAALDIACWDIAAQA 118
Query: 179 IDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-----IT 232
+PL + GG + + +I +P +++ GF + +G +
Sbjct: 119 AGLPLCDMTGGRVAGPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEAEGGPA 178
Query: 233 ADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
D + + A P ++ DAN G T E A+ +L L ++ E P W+
Sbjct: 179 LDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGL--DIVLEAPC--ASWAE 234
Query: 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKAT 350
+ R + ++ DE ++ D+ ++++L V +K++K G+ L+
Sbjct: 235 TKSL----RARCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIA 290
Query: 351 RKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGGCEVSG 406
+G+ + + + ++++ LHLA L+T + + + +
Sbjct: 291 AAAGMVMSVQDTVGSQISFAAILHLAQSTPRHLLRCALDTRAMTTAELAEIDAPLRD 347
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} Length = 371 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 4e-57
Identities = 63/352 (17%), Positives = 122/352 (34%), Gaps = 24/352 (6%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
+ F VD+ + G + + +R+ G GWGE
Sbjct: 10 DVFQVDLPYSGGV--------YYLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNYI 61
Query: 121 DQTKALVK--VREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANS 178
V+ + L P ++ D + L G E A + +++A D S
Sbjct: 62 ASHPRGVRAGIATMAPSLIGLDPRRVDRINDAMDDALLGHEDA--KTAIDVACWDIFGKS 119
Query: 179 IDIPLWRLFGGASN-SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDV 237
+ +P+ L GG +N L +I P + +KY G+ + + D
Sbjct: 120 VGLPVCELLGGRTNTRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISGEPVTDAKR 179
Query: 238 LQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296
+ A P FI+DAN + E A+ +L L E P W +
Sbjct: 180 ITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGL--DFALEAPCA--TWRECISL- 234
Query: 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGL 355
R I ++ DE + + K++ ++ A +++K++K G+ + +G
Sbjct: 235 ---RRKTDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGY 291
Query: 356 HLMIDGMIETRLATGFALHLAAGLGCIKYVN-LNTPFLLSEDPFVGGCEVSG 406
+ + + +A +HLA + L +++ G ++
Sbjct: 292 SVSVQETCGSDIAFAAIVHLAQTIPERSLRCILECRDMVTVKTADGAFDIQD 343
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A Length = 342 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 2e-56
Identities = 50/318 (15%), Positives = 101/318 (31%), Gaps = 34/318 (10%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGD-QT 123
+ + + + + ++ + + + I + G +GE +
Sbjct: 4 LTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIA 63
Query: 124 KALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPL 183
+ + + R T AL + + + RA + MAL +P
Sbjct: 64 SVKHVIEQWFEDNRNKSFETYEAALKLVDSLENTP---AARATIVMALYQMFHV---LPS 117
Query: 184 WRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA 243
+ + G T +S + L + + +KL ++ +
Sbjct: 118 FSVAYG--------ATASGLSNKQLESLKAT----KPTRIKLKWTPQ---IMHQIRVLRE 162
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
+ H ++DANE ++ + L L V + E+P D
Sbjct: 163 LDFHFQLVIDANESLDRQDFTQ-LQLLAREQV--LYIEEPFKDISMLDE------VADGT 213
Query: 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM 362
+ DE SL D+ +++ VV +K + G + I + G ++I GM
Sbjct: 214 IPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGM 273
Query: 363 IETRLATGFALHLAAGLG 380
E L+ F LA
Sbjct: 274 YEYGLSRYFTAMLARKGD 291
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A Length = 413 | Back alignment and structure |
|---|
Score = 181 bits (459), Expect = 1e-52
Identities = 60/386 (15%), Positives = 129/386 (33%), Gaps = 51/386 (13%)
Query: 62 TFWVDVQRA--EGRELNVAL--SAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVV- 115
F+ D QRA +G + + ++ G + V + E++++ + L +G V G+ A V
Sbjct: 14 GFYFDDQRAIKKGAGHDGFTYTGSTVTEGFTQVRQKGESISVLLVLEDGQVAHGDCAAVQ 73
Query: 116 --------PLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEF--ASVRA 165
PL +++ +E L T +E ++ ++R
Sbjct: 74 YSGAGGRDPLFLAKDFIPVIE-KEIAPKLIGREITNFKPMAEEFDKMTVNGNRLHTAIRY 132
Query: 166 GVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIP--AVSPAEASELASK--------Y 215
G+ A++DAVA + + + + N + +P A S + + K
Sbjct: 133 GITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVL 192
Query: 216 CKLGFSTLKLNVGRNITADFDVLQAI--------------HAVHPHCSFILDANEGYTSE 261
+ ++ +G + ++ + H + A +
Sbjct: 193 PHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIK 252
Query: 262 EAVEVLGKLNDMGV-IPVLFEQPVHRDDWSGLHD-----VSNFARDTYGISVVADESCRS 315
+ + L + + E P+ +D + + +VADE C +
Sbjct: 253 AMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNT 312
Query: 316 LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFAL 373
+ DV+ +V IK G V I + +G+ G ET +
Sbjct: 313 VEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTT 372
Query: 374 HLAAGLGCIKYVNLNTPFLLSEDPFV 399
++ G + L P + ++ +
Sbjct: 373 NIGMACGARQV--LAKPGMGVDEGMM 396
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* Length = 322 | Back alignment and structure |
|---|
Score = 174 bits (443), Expect = 3e-51
Identities = 61/333 (18%), Positives = 108/333 (32%), Gaps = 38/333 (11%)
Query: 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALV 127
+ A+ + + A + L ++ + + + + GWGE++ +P + +
Sbjct: 4 RSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQET----- 57
Query: 128 KVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187
EA L + + +A + SV GV AL + +R
Sbjct: 58 -WEEAQSVLLA-------WVNNWLAGDCELPQMPSVAFGVSCALAELTDTLPQAANYR-- 107
Query: 188 GGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHP 246
A + P + + G K+ VG D V+ + P
Sbjct: 108 ---------AAPLCNGDPDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIP 156
Query: 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPV-LFEQPVHRDDWSGLHDVSNFARDTYGI 305
LDAN +T + + +N + E+P D S GI
Sbjct: 157 DLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRA------FARETGI 210
Query: 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIE 364
++ DES R + + V IK G + + ++A GL +I IE
Sbjct: 211 AIAWDESLREPDFAFVAEE--GVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIE 268
Query: 365 TRLATGFALHLAAGLGCIKYVNLNTPFLLSEDP 397
+ L +AA L L+T L+
Sbjct: 269 SSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQ 301
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} Length = 384 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 3e-50
Identities = 71/336 (21%), Positives = 124/336 (36%), Gaps = 19/336 (5%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
L + L P E+ I +E +G VG GE V P TG + +
Sbjct: 14 LVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTG----TAAILYRLAK 69
Query: 135 FLRQSPPTTLNFALDEIARIL-------PGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187
L P + + I + +G++MA+ D +P+ +L
Sbjct: 70 HLVGHSPHDVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLL 129
Query: 188 GGAS-NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHP 246
GGA ++ + + E + A+ G L VGR D ++ A+
Sbjct: 130 GGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLDLEITAAVRGEIG 189
Query: 247 HCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306
LDANEG++ +A+ + KL EQP + V R+ GI
Sbjct: 190 DARLRLDANEGWSVHDAINMCRKLEKYD--IEFIEQPTVSWSIPAMAHV----REKVGIP 243
Query: 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIET 365
+VAD++ +L DV ++ ++ A ++ I + G+ ++ +GL + I T
Sbjct: 244 IVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTT 303
Query: 366 RLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGG 401
+ T H+ + + N L+ ED
Sbjct: 304 GITTCAEHHIGLAIPNLDDGNQIMWQLVQEDIVSSP 339
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* Length = 391 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 3e-48
Identities = 55/327 (16%), Positives = 111/327 (33%), Gaps = 20/327 (6%)
Query: 94 ENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIAR 153
++V +++ G G GE++ + + L P L E+
Sbjct: 22 KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLHDLKQGLLSILLGQNPFDLMKINKELTD 81
Query: 154 ILPGSEF-----ASVRAGVEMALIDAVANSIDIPLWRLFGGASN-SLSTAITI----PAV 203
P + + + +R G++ AL D A +DI + GG + I +
Sbjct: 82 NFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIKVCYPIFRHRFSE 141
Query: 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AVHPHCSF-ILDANEGYTSE 261
++ + + GF +L VG+N+ AD + L + D + +
Sbjct: 142 EVESNLDVVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWK 201
Query: 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321
+A + +L + + E P R+D+ GL+ + E S Q+
Sbjct: 202 DAHRAIKRLTKYDLGLEMIESPAPRNDFDGLYQLRL------KTDYPISEHVWSFKQQQE 255
Query: 322 VMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380
+++++ + NI G+ + A + +++ E + T HL L
Sbjct: 256 MIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSVGTAAMAHLGCSLT 315
Query: 381 CIKYV-NLNTPFLLSEDPFVGGCEVSG 406
I + + P L D
Sbjct: 316 NINHTSDPTGPELYVGDVVKNRVTYKD 342
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} Length = 330 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 1e-46
Identities = 56/357 (15%), Positives = 107/357 (29%), Gaps = 52/357 (14%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVT-GDQTKALV 127
+ + L+ ++ E V ++VE ++G G+ ++ P GD +
Sbjct: 3 KISYSPYTLKPVQSLNAATAATA-REGVLLKVEWNDGLYGFADLH--PWPELGDLS---- 55
Query: 128 KVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187
+ E LR TT + + +A DA+ ++
Sbjct: 56 -LEEQLSDLRMGRMTT------------------QIEQSIWLARRDALLRKEKKHVFDGG 96
Query: 188 GGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPH 247
+ + L G++T+K+ +GR++ + D+L I A
Sbjct: 97 EKIK----NNYLLSHFQDLKPGFLDGLK-NEGYNTVKVKMGRDLQKEADMLTHIAA--SG 149
Query: 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-EQPVHRDDWSGLHDVSNFARDTYGIS 306
LD N + + + + L + + E P D H +
Sbjct: 150 MRMRLDFNALGSWQTFEKFMVNLPLTVRPLIEYVEDPFPFDF----HAWGEARKL---AK 202
Query: 307 VVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETR 366
+ D + + V+ IK AK + + +K L L + ++
Sbjct: 203 IALDNQYDKVPWG--KIASAPFDVIVIKPAK---TDVDKAVAQCQKWNLKLAVTSYMDHP 257
Query: 367 LATGFALHLAAGL-----GCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
+ A+ +A L I T L D F G G G
Sbjct: 258 VGVVHAVGVAMELKDKYGDMILESGCLTHRLYQMDSFAAELSTQGPYLLKNKGTGVG 314
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* Length = 327 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 2e-44
Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 21/259 (8%)
Query: 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEAS 209
E + P +E+ E A A + +++ T+PAV P EA+
Sbjct: 35 EFS---PFAEYG----PRECARWWAAC--YEAAELGWPAPVRDTVPVNATVPAVGPEEAA 85
Query: 210 ELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLG 268
+ + G++ D ++A+ A+ P +D N + + AV ++
Sbjct: 86 RIVASSGCTTAKVKVAERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIR 145
Query: 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328
L+ + EQP D L +V R + + ADES R D +V A
Sbjct: 146 LLDRFEL--EYVEQPCATVD--ELAEV----RRRVSVPIAADESIRRAEDPLRVRDAEAA 197
Query: 329 SVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVN-L 387
VV +K+ G G ++ + GL +++ +ET + + LAA L + Y L
Sbjct: 198 DVVVLKVQPLG--GVRAALRLAEECGLPVVVSSAVETSVGLAAGVALAAALPELPYACGL 255
Query: 388 NTPFLLSEDPFVGGCEVSG 406
T LL D
Sbjct: 256 ATLRLLHADVCDDPLLPVH 274
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} Length = 389 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 5e-40
Identities = 59/338 (17%), Positives = 122/338 (36%), Gaps = 21/338 (6%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQ--TKALVKVREA 132
A + ++V A+ + +G VG G + + DQ +++ + E
Sbjct: 13 FQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQTLFNPLPDQQEIESVFE-HEV 71
Query: 133 CQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN 192
L+ + L ++ + V++AL D A +PL L G N
Sbjct: 72 WPSLKGNRAIALVHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRRN 131
Query: 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIH-AVHPHC 248
+ + + L S +G+S K+ VG + D L+ + V
Sbjct: 132 RVKAYASGLDFHLDDDAFVSLFSHAASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGS 191
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
++D NE +TS+EA+ L + + G + E P+ R D GL + R + +
Sbjct: 192 KVMIDPNEAWTSKEALTKLVAIREAGHDLLWVEDPILRHDHDGLRTL----RHAVTWTQI 247
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLA 368
L + +++ + A ++N+ V ++I + G+ + I
Sbjct: 248 NSGEYLDLQGKRLLLEAHAADILNV---HGQVTDVMRIGWLAAELGIPISIGNT-----F 299
Query: 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
+H+A L ++++ + + E+
Sbjct: 300 LEAGVHMAVALPEVEWLEYSFQNF--DHLVEQPIEIRD 335
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A Length = 398 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 64/360 (17%), Positives = 122/360 (33%), Gaps = 40/360 (11%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
+ + V++ L P + + +RV +G GWGE + G
Sbjct: 30 DVWVVNLP----------LVNPFTSSFETKTGETRTVVRVRTDSGVEGWGET-----MWG 74
Query: 121 DQTKALVKVREACQFLRQSPPTTLNFALDEIARILP--GSEFASVRAGVEMALIDAVANS 178
A+V R L + P L + + G + A V++A DA+ +
Sbjct: 75 APVAAIV--RRMAPDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKA 132
Query: 179 IDIPLWRLFGGASN----------SLSTAITIPAVSPAEASELASKYCK-LGFSTLKLNV 227
+ L GGA PA P +E A + + GF +KL
Sbjct: 133 TGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAEHAVRVVEEGGFDAVKLKG 192
Query: 228 GRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD 287
+ D +L+A+ P + +D N ++ ++V L ++ E P
Sbjct: 193 TTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELD--LEYLEDPCV-- 248
Query: 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
G+ V + I + + D M+ N V++ + K+ G+ T +
Sbjct: 249 GIEGMAQV----KAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKAL 304
Query: 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSG 406
GL + + E +AT L + + + +++ + L D + +
Sbjct: 305 AAHCETFGLGMNLHSGGELGIATAAHLAVVSSTPVLSRA-IDSMYYLHADDIIEPLHLEN 363
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A Length = 359 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 6e-38
Identities = 67/339 (19%), Positives = 124/339 (36%), Gaps = 23/339 (6%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREA 132
R +NV L+ P+ + +V V I + S G VG + V K L+ +
Sbjct: 12 RAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLD--DM 69
Query: 133 CQFLRQSP--PTTLNFALDEIARIL-PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189
+ P P +L L + + AG++MA DA+ + PL +L G
Sbjct: 70 AAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGA 129
Query: 190 ASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI-HAVHPH 247
+ + + A+E A +LGF +K +G + D V+++I AV
Sbjct: 130 NARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSIRQAVGDD 189
Query: 248 CSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307
++D N+ A++ L G E+P + D+ G + + + V
Sbjct: 190 FGIMVDYNQSLDVPAAIKRSQALQQEG--VTWIEEPTLQHDYEGHQRI----QSKLNVPV 243
Query: 308 VADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETR 366
E+ ++ K + + K GV G ++ ++ G+ + E
Sbjct: 244 QMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQE-- 301
Query: 367 LATGFALHLAAGL---GCIKYVNLNTPFLLSEDPFVGGC 402
+ HL A ++ ++L + F GG
Sbjct: 302 ----ISAHLLAATPTAHWLERLDLAGSVIEPTLTFEGGN 336
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} Length = 392 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-36
Identities = 63/324 (19%), Positives = 116/324 (35%), Gaps = 28/324 (8%)
Query: 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGE-VAVVPLVTGDQTKALV 127
R +S P+ ++ + V + VE S+G VGWGE P + LV
Sbjct: 14 RVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRARLV 73
Query: 128 KVREACQFLRQSP--PTTLNFALDEIARIL-----PGSEFASVRAGVEMALIDAVANSID 180
+ A ++ P L+ +L A AG+++AL D A
Sbjct: 74 ETVLAPLLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAG 133
Query: 181 IPLWRLFGGASNSLSTAITIPA----VSPAEASELASKYCKLGFSTLKLNVGRNITADFD 236
PLW GG+ + I ++P ++ ++ G+ KL VG + D
Sbjct: 134 QPLWAWLGGSGDR------IGVYASGINPENPEDVVARKAAEGYRAFKLKVGFDDARDVR 187
Query: 237 VLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLH-D 294
+ + + DAN+G+ A ++ +L E+P+ D + +
Sbjct: 188 NALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQ--LDWLEEPLRADRPAAEWAE 245
Query: 295 VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS 353
+ + + E+ + + + V+ LAK+ G G L + +A +
Sbjct: 246 L----AQAAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAA 301
Query: 354 GLHLMIDGMIETRLATGFALHLAA 377
GL + + + HL A
Sbjct: 302 GL-RYCPHYLGAGIGLQASAHLLA 324
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* Length = 413 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 1e-35
Identities = 64/362 (17%), Positives = 114/362 (31%), Gaps = 49/362 (13%)
Query: 63 FWVDVQRA--EGRELNVAL--SAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVV-- 115
F+ D Q+A G + + P++ G +SV + E V++++ L NG V G+ A V
Sbjct: 15 FYFDDQQAIKNGAGHDGFIYTGDPVTPGFTSVRQAGECVSVQLILENGAVAVGDCAAVQY 74
Query: 116 -------PLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFA--SVRAG 166
PL + + L ++ +VR G
Sbjct: 75 SGAGGRDPLFLAEHFIPFLN-DHIKPLLEGRDVDAFLPNARFFDKLRIDGNLLHTAVRYG 133
Query: 167 VEMALIDAVANSIDIPLWRLFGGASNSLSTAITIP--AVSPAEASELASKYCKLG----- 219
+ AL+DA A + + IP S + K G
Sbjct: 134 LSQALLDATALASGRLKTEVVCDEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLP 193
Query: 220 ---FSTLKLNVGRNITADFD--------VLQAIHAVHPHCSFILDA------NEGYTSEE 262
+ ++ +G + +L + H + +D
Sbjct: 194 HALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVR 253
Query: 263 AVEVLGKLNDMGV-IPVLFEQPVHRDD----WSGLHDV-SNFARDTYGISVVADESCRSL 316
E + L +P+ E PV + L + R G+ +VADE C +
Sbjct: 254 CAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTY 313
Query: 317 NDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFALH 374
D+ +V IK G + + + K G+ G ET ++ +H
Sbjct: 314 QDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVH 373
Query: 375 LA 376
+A
Sbjct: 374 VA 375
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A Length = 441 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 60/359 (16%), Positives = 108/359 (30%), Gaps = 43/359 (11%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEV-----------AVVPLVTGDQT 123
+ L+ + V G G GE A + G
Sbjct: 33 VAFRDPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYGDLAHLEQVRAAAARLPGLDV 92
Query: 124 KALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPL 183
AL ++ + + T L + + V A E+A +D + P+
Sbjct: 93 YALHRIYRRVADVVGANIVTDMHGLTGSSSRVKT--VDRVFAAFEVACLDIQGKAAGRPV 150
Query: 184 WRLFGGASN-----------------SLSTAITIPAVSPAEASELASKYCK-LGFSTLKL 225
L GG PA+ P A GF ++KL
Sbjct: 151 ADLLGGKVRDAVPYSAYLFYKWAGHPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKL 210
Query: 226 NVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV 284
G + + +QA+ P LD N +T E ++ V L+ + E P
Sbjct: 211 KGGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIRVGRALDG---VLEYLEDPT 267
Query: 285 HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGT 343
D G+ V A + + + + + + ++ V+ I + G++ +
Sbjct: 268 PGID--GMARV---AAEV-PMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLVRS 321
Query: 344 LQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL-GCIKYVNLNTPFLLSEDPFVGG 401
I G+ L + ++ HLAA + +TP+ +D G
Sbjct: 322 AHIATLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACDTHTPWQDGQDVVAPG 380
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} Length = 390 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 8e-30
Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 20/288 (6%)
Query: 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR 130
R + + L P++ ++++ + + I +E G G + P V + +
Sbjct: 34 TARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLE--PYVPKAMKYLVPALH 91
Query: 131 EACQFLRQSP--PTTLNFALDEIARIL-PGSEFASVRAGVEMALIDAVANSIDIPLWRLF 187
+ L P P + + + +GV+MA+ DA+A + ++PL L
Sbjct: 92 DMSDMLAGQPLAPAEIYDKTRKSLHFVGYAGLSMIAASGVDMAVWDALARAANMPLCTLL 151
Query: 188 GGASNSLSTAITI------PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQA 240
GG S+ + PA AEA EL ++ GF LKL +GR + D + +A
Sbjct: 152 GGTPGSVKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRDDPAVDIETAEA 211
Query: 241 I-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299
+ AV + ++D N+G EA+ +++D+G E+PV D++ G +
Sbjct: 212 VWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLG--LEWIEEPVVYDNFDGYAQL---- 265
Query: 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
R ++ E+ ++ + +Q +V + GV G ++
Sbjct: 266 RHDLKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRA 313
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* Length = 383 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 8e-30
Identities = 54/279 (19%), Positives = 106/279 (37%), Gaps = 15/279 (5%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
+ + PL +++ V I V G G + + LV+ + +
Sbjct: 37 VITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRLALKPLVHLVE--DIGR 94
Query: 135 FLR-QSP-PTTLNFALDEIARIL-PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS 191
L ++ P L A+D R+L +G++MA DA+ P+ L GG++
Sbjct: 95 ELAGKALVPVDLMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSA 154
Query: 192 NSLST-AITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI-HAVHPHC 248
+ + + L + + GF +K G ++ D +++ + + P
Sbjct: 155 RPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDI 214
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
+ +LD N+ EA + +L D E+PV +++ SG V R+ I +
Sbjct: 215 ALMLDFNQSLDPAEATRRIARLADYD--LTWIEEPVPQENLSGHAAV----RERSEIPIQ 268
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
A E+ + + + + L K G+ G L +
Sbjct: 269 AGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNV 307
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* Length = 445 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 56/316 (17%), Positives = 99/316 (31%), Gaps = 52/316 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILPG 157
I+++ G G GE + ++ A + + N I+ L G
Sbjct: 61 IQLDTDAGLTGLGETYADTVHLER-------LQAAAHAIVGRSVFSTNVIRALISDALGG 113
Query: 158 SEFA----------------SVRAGVEMALIDAVANSIDIPLWRLFGGA----------- 190
V + E+A +D P+ L GGA
Sbjct: 114 DRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVSDLLGGAVRDAVPFSAYL 173
Query: 191 ------SNSLSTAITIPAVSPAEASELASKYCK-LGFSTLKLNVGRN-ITADFDVLQAIH 242
A+ P A + GFS +KL G + ++A+
Sbjct: 174 FYKWAAHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLKGGVFAPEEEMAAVEALR 233
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
A P LD N +T + +V+V L V+ E P D G+ +V A
Sbjct: 234 AAFPDHPLRLDPNAAWTPQTSVKVAAGLEG--VLE-YLEDPTPGLD--GMAEV---AAQA 285
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
+ + + + + + + +N VV + G+ + + GL L +
Sbjct: 286 -PMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQRSRLLAGICDTFGLGLSMHS 344
Query: 362 MIETRLATGFALHLAA 377
++ +HLAA
Sbjct: 345 NSHLGISLAAMVHLAA 360
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} Length = 428 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 8e-25
Identities = 62/329 (18%), Positives = 124/329 (37%), Gaps = 37/329 (11%)
Query: 34 FCVSNVMAETTTVRTSERTSLGFKNLT--ETFWVDVQRAEGRELNVALSAPLSLGLSSVE 91
F S + + T K +T + + +++G+ S
Sbjct: 17 FAASGRITLSIKRFTQNSRRHDMK-ITKINAIPLSY--------RLPEGKTVTMGVGSTI 67
Query: 92 NVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEI 151
+ + IRVE S G G+GE P + +L+ A +
Sbjct: 68 KRDAIIIRVETSEGITGYGE--AHPGRSPGAITSLIHNTIAPMLIGMKA-----TDCVGA 120
Query: 152 ARILPGSEFASVR---------AGVEMALIDAVANSIDIPLWRLFGGASNSL---STAIT 199
+ + + +S +G++MAL D + ++PL+ L GG+ + + I
Sbjct: 121 WQRVHRMQLSSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLGGSKRRIPAYAGGIA 180
Query: 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGY 258
+ +E A +Y G+ LKL +G D + ++ + + + DAN Y
Sbjct: 181 LGYQPKESLAEEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTDANTAY 240
Query: 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLND 318
T +A VL L ++ E+P +D++ +V A+ T + + A E+ + +
Sbjct: 241 TMADARRVLPVLAEIQ--AGWLEEPFACNDFASYREV---AKITPLVPIAAGENHYTRFE 295
Query: 319 VQKVMQENLASVVNIKLAKF-GVLGTLQI 346
+++ V L+K G+ ++I
Sbjct: 296 FGQMLDAGAVQVWQPDLSKCGGITEGIRI 324
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* Length = 392 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 65/366 (17%), Positives = 119/366 (32%), Gaps = 55/366 (15%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVE-----LSNGCVGWGEVAVVPLVTGDQTKALV 127
RE+ +S+P+ + + V VG+G + G L+
Sbjct: 12 REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQG----GLI 67
Query: 128 KVREACQFLRQSPPTTLNFALDEI----------ARILPGSEFASVRA--GVEMALIDAV 175
+ R A + L P LN A D + PG A ++MA+ DAV
Sbjct: 68 RERFASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAV 127
Query: 176 ANSIDIPLWRLFGGASNSL---------STAITIPAVSPAEASELASKYCKLGFSTLKLN 226
A PL+RL + P + Y G++ +K+
Sbjct: 128 AKIAGKPLFRLLAERHGVKANPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMK 187
Query: 227 VGR-NITADFDVLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV 284
+G I D ++A+ + +DAN + E + L D +E+
Sbjct: 188 IGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYP--LFWYEEVG 245
Query: 285 HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN----LASVVNIKLAKF-G 339
D++ + + Y + E+ S D + +++ + A G
Sbjct: 246 DPLDYALQAAL----AEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYG 301
Query: 340 VLGTLQIIKATRKSGLHLMID---GMIETRLATGFALHLAAGLG---CIKYVNLNTPFLL 393
+ + ++ + G G + +L++AAGLG Y +L P+
Sbjct: 302 LCEYQRTLEVLKTHGWSPSRCIPHGGHQ------MSLNIAAGLGLGGNESYPDLFQPYGG 355
Query: 394 SEDPFV 399
D
Sbjct: 356 FPDGVR 361
|
| >3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme; enolase,metal-binding,PSI-II, NYSGXRC, structural genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A Length = 398 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 59/291 (20%), Positives = 104/291 (35%), Gaps = 27/291 (9%)
Query: 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR 130
E + L+ + + + RV G +G T ++
Sbjct: 28 ETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAY-TGDEHETMFDIDRIIHEE 86
Query: 131 EACQFLRQSPPTTLNFALDEIARILPGSEFASVR---------AGVEMALIDAVANSIDI 181
A + Q A++ + F +R A V A+ DAV ++ +
Sbjct: 87 LAPTLIGQDA-----MAIERLWDSGYKVTFDILRDRRLGLVALAAVNTAIWDAVGKALKM 141
Query: 182 PLWRLFGGASNSLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVL 238
PLW+L+GG N L ++ Y +LG + +K VG + D +
Sbjct: 142 PLWKLWGGYRNELPMIAIGGYYGEPLGSIADEMHNYQELGLAGVKFKVGGLSAAEDAARI 201
Query: 239 QAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH-RDDWSGLHDVS 296
A A +DAN+GY AV++ ++ D+ FE+PV +D + DV
Sbjct: 202 TAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLN--IRWFEEPVEWHNDKRSMRDV- 258
Query: 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
R + V A ++ S + + +M+ V N + G L+
Sbjct: 259 ---RYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRT 306
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 3nxl_A Length = 470 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 7e-24
Identities = 63/361 (17%), Positives = 121/361 (33%), Gaps = 61/361 (16%)
Query: 98 IRVELSNGCVGWGEV-----------AVVPLVTG----DQTKALVKVREACQFLRQS--- 139
+ ++ + G G GEV V+PLV G L +R A +
Sbjct: 41 VILKDNAGRTGVGEVPGGEGIRQALERVIPLVVGQSIGRTNGVLSSIRRALAGGGNAAHQ 100
Query: 140 ----PPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG------ 189
T+ + A +V VE AL+D + +++P+ L G
Sbjct: 101 ATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAGQQRDS 160
Query: 190 -------------------------ASNSLSTAITIPAVSPAEASELASKYC-KLGFSTL 223
++ A++PA + LA + GF+
Sbjct: 161 APMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADF 220
Query: 224 KLNVGRNITA-DFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282
KL G A + + + AI A PH LD N ++ EA+ + + E
Sbjct: 221 KLKGGVMPGAEEMEAIAAIKARFPHARVTLDPNGAWSLNEAIALCKGQGH---LVAYAED 277
Query: 283 PVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVL 341
P + +SG ++ F R T GI + + +Q + + + +
Sbjct: 278 PCGPEAGYSGREVMAEFKRAT-GIPTATNMIATDWRQMGHAVQLHAVDIPLADPHFWTMQ 336
Query: 342 GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL-GCIKYVNLNTPFLLSEDPFVG 400
G++++ + + GL ++ H+AA G I ++ + + +++
Sbjct: 337 GSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGNITAIDTHWIWQEAQERLTR 396
Query: 401 G 401
Sbjct: 397 E 397
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A Length = 382 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 9e-24
Identities = 55/329 (16%), Positives = 102/329 (31%), Gaps = 47/329 (14%)
Query: 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR 130
E L L P IR+ +G GWGE + +
Sbjct: 10 ETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGE----CVDWLPALHVGF-TK 64
Query: 131 EACQFLR-QSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189
FL + + + R + + V MAL + A + D + L+GG
Sbjct: 65 RIIPFLLGKQA-----GSRLSLVRTIQKW-HQRAASAVSMALTEIAAKAADCSVCELWGG 118
Query: 190 ASNSLSTAITIPA-----------VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDV 237
IP + + K GF +K+ +G + D
Sbjct: 119 RYRE-----EIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRH 173
Query: 238 LQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF-EQPVHRDDWSGLHDV 295
+ A+ H + ILDAN+ Y + A + ++ + + E+P+ D +
Sbjct: 174 INALQHTAGSSITMILDANQSYDAAAAFKWERYFSEW--TNIGWLEEPLPFDQPQDYAML 231
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSG 354
R + V E+ + ++ + ++ + G+ ++ R G
Sbjct: 232 ----RSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFG 287
Query: 355 L----HLMIDGMIETRLATGFALHLAAGL 379
+ H L+ +AL A L
Sbjct: 288 VRASAHAYDGS-----LSRLYALFAQACL 311
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} Length = 445 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 49/316 (15%), Positives = 96/316 (30%), Gaps = 53/316 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIAR---- 153
I + + G GE + ++A ++ + N
Sbjct: 60 IEIITEDS-YGLGES-----YGDSAHLDRL--QKAADKIKGLSVYSTNVIYQRCVESLRN 111
Query: 154 ------------ILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN--------- 192
++ S V + E+A +D I + L GG
Sbjct: 112 DTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLGGRVRDSVQYSAYL 171
Query: 193 --------SLSTAITIPAVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIH 242
PA+ P + A K GF +KL G + ++A+H
Sbjct: 172 FYKWGGHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLKGGVFPPADEVAAIKALH 231
Query: 243 AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
P LD N +T E + V +L I E P + G+ V A++
Sbjct: 232 KAFPGVPLRLDPNAAWTVETSKWVAKELEG---IVEYLEDPA--GEIEGMAAV---AKEA 283
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDG 361
+ + + + + + + + ++ V+ + G+ + + GL L +
Sbjct: 284 -SMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQTLASICATWGLRLSMHS 342
Query: 362 MIETRLATGFALHLAA 377
++ HLA+
Sbjct: 343 NSHLGISLAAMTHLAS 358
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A Length = 464 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-23
Identities = 46/349 (13%), Positives = 105/349 (30%), Gaps = 56/349 (16%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
+ S L+L + + ++ ++G G GEV G++ + + +A
Sbjct: 36 VAGHDSMLLNLSGAHSPYFTRNIVILKDNSGNTGVGEV-----PGGEKIRQTL--EDAKP 88
Query: 135 FLRQSPPTTLNFALDEIARIL-------------PGSEFASVRAGVEMALIDAVANSIDI 181
+ ++ + + V +E A++D + + +
Sbjct: 89 LVIGKTLGEYKNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGV 148
Query: 182 PLWRLFGG-------------------------------ASNSLSTAITIPAVSPAEASE 210
+ L G A++P
Sbjct: 149 TVASLLGDGQQRDAVEMLGYLFFIGDRKKTTLAYQNQENDPCDWYRVRHEEAMTPESVVR 208
Query: 211 LASK-YCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLG 268
LA Y K GF+ KL G + + + + A+ P LD N ++ +EAV++
Sbjct: 209 LAEAAYEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKIGK 268
Query: 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328
+L + E P + ++ R G+ + + +
Sbjct: 269 QLKG---VLAYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSV 325
Query: 329 SVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+ + + G++++ + + GL ++ H+AA
Sbjct: 326 DIPLADPHFWTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAA 374
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* Length = 398 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 50/292 (17%), Positives = 101/292 (34%), Gaps = 25/292 (8%)
Query: 71 EGRELNVALSAPLSLG------LSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK 124
+ + L+ P+S + V + + +G G G + G
Sbjct: 32 KLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGF-SYSKRAGGQGIY 90
Query: 125 ALVKVREACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSID 180
A K E L P ++ ++ + +++AL D A
Sbjct: 91 AHAK--EIADNLLGEDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAG 148
Query: 181 IPLWRLFGGASNSL---STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFD 236
+PL +L G +S+ +T+ + + + G +KL VG+ N D
Sbjct: 149 LPLAKLLGAHRDSVQCYNTSGGFLHTPLDQVLKNVVISRENGIGGIKLKVGQPNCAEDIR 208
Query: 237 VLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
L A+ A+ ++DAN+ + E A+ + K+ + E+P+ D G +
Sbjct: 209 RLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFN--LIWIEEPLDAYDIEGHAQL 266
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
+ E S + ++++ N + V + G+ L+I
Sbjct: 267 ----AAALDTPIATGEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKI 314
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A Length = 388 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 50/294 (17%), Positives = 106/294 (36%), Gaps = 30/294 (10%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARI--- 154
+R+ G VGWGE +V AL+ A + + + + +
Sbjct: 55 VRMTTEAGTVGWGET--YGIVAPGAVAALINDLLAGFVIGRDA--------SDPSAVYDD 104
Query: 155 ---------LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLST-AITIPAVS 204
G + A +++AL D + L GG +S +P +
Sbjct: 105 LYDMMRVRGYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYVSGLPERT 164
Query: 205 PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGYTSEEA 263
ELA + GF+ K + + + P D + T E A
Sbjct: 165 LKARGELAKYWQDRGFNAFKFATPVADDGPAAEIANLRQVLGPQAKIAADMHWNQTPERA 224
Query: 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323
+E++ ++ P E PV +D +GL V +++T + + E R+ D++ +
Sbjct: 225 LELIAEMQPFD--PWFAEAPVWTEDIAGLEKV---SKNT-DVPIAVGEEWRTHWDMRARI 278
Query: 324 QENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+ ++V ++ G+ ++I + G+ ++ + + +L ++
Sbjct: 279 ERCRIAIVQPEMGHKGITNFIRIGALAAEHGIDVIPHATVGAGIFLAASLQASS 332
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A Length = 371 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 54/287 (18%), Positives = 105/287 (36%), Gaps = 20/287 (6%)
Query: 71 EGRELNVALSAPLSLG-LSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV 129
+ L L+ ++ + E + +R+E S+G G G G +V
Sbjct: 8 RTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGY-TYTVNHGGAAVATMV-D 65
Query: 130 REACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWR 185
++ L + + + L G S + V++AL D PLW+
Sbjct: 66 KDLRGCLLGADAEQIEKIWQSMWWRLHYAGRGGHATSAISAVDIALWDLKGIRARTPLWK 125
Query: 186 LFGGASNSL---STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI 241
LFGG + + I + A+ A ++ GF +K+ VGR ++ D D + A+
Sbjct: 126 LFGGYDPVVPVYAGGI-DLELPVADLKTQADRFLAGGFRAIKMKVGRPDLKEDVDRVSAL 184
Query: 242 -HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
+ ++DAN +T + A+ L E+P DD G +
Sbjct: 185 REHLGDSFPLMVDANMKWTVDGAIRAARALAPFD--LHWIEEPTIPDDLVGNARI----V 238
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
G ++ E+ +L D ++ ++ ++ G ++
Sbjct: 239 RESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKV 285
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} Length = 372 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 22/285 (7%)
Query: 71 EGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR 130
E V P S G ++ + + G G G V
Sbjct: 12 EVSAYTVPTDYPESDGTLQWDSTTMILVEAH-GGGRKGLGYT-----YGDVSVGRFV-ES 64
Query: 131 EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
+ S + + + A + V++AL D A + +PL
Sbjct: 65 KLAGVAEGSDALSPPAVWARMQAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLADA 124
Query: 187 FGGASNSLST--AITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HA 243
+ + + E + G +K+ VGR D + ++A A
Sbjct: 125 LPRFHAEVPVYGSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGREPEKDPERVRAAREA 184
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLN-DMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302
+ ++DAN YT ++A+ G + G E+PV +D GL + R
Sbjct: 185 IGESVELMVDANGAYTRKQALYWAGAFAREAG--ISYLEEPVSSEDREGLRLLR--DRGP 240
Query: 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
G+++ A E +L + + ++ + + G+ G L++
Sbjct: 241 GGVAIAAGEYEWTLPQLHDLAG--CVDILQADVTRCGGITGLLRV 283
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} Length = 401 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 61/305 (20%), Positives = 111/305 (36%), Gaps = 36/305 (11%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-----QSPPTTLNFALDEIA 152
+RV + G +GWGE PL + C+ + Q D+IA
Sbjct: 31 VRVA-AGGHIGWGECEAAPLPSIAAFVCPK-SHGVCRPVSDSVLGQRL-----DGPDDIA 83
Query: 153 RIL--------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAIT--IPA 202
RI + + +G+EMAL D + + P W L G +++ +
Sbjct: 84 RIAALVGYNSMDLLQAPHMLSGIEMALWDLLGRRLSAPAWALLGYSASHGKRPYASLLFG 143
Query: 203 VSPAEASELASKYCKLGFSTLKLNVGR----NITADFDVLQAI-HAVHPHCSFILDANEG 257
+P E E A + GF+ +K G + AD D + A + P ++D +
Sbjct: 144 DTPQETLERARAARRDGFAAVKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQI 203
Query: 258 Y--TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS 315
+ E A L L+ G + E+P + ++ R + + E+ +
Sbjct: 204 FGEDVEAAAARLPTLDAAG--VLWLEEPFDAGALAAHAALA--GRGA-RVRIAGGEAAHN 258
Query: 316 LNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALH 374
+ Q +M + I + G+ ++ A + G+ + + LA +L
Sbjct: 259 FHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITYVN-HTFTSHLALSASLQ 317
Query: 375 LAAGL 379
AGL
Sbjct: 318 PFAGL 322
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A Length = 450 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 3e-20
Identities = 51/330 (15%), Positives = 103/330 (31%), Gaps = 59/330 (17%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
+ +E +G G GE+ + + + + + + + L +L
Sbjct: 38 LVLEDESGNRGVGEI-----PSSEGILNGL--EKCRSLVEGARVNEVKQVLSRARGLLAQ 90
Query: 156 -----------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-------------- 190
V +E AL D ++ +P+ L G
Sbjct: 91 GGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQRDEVEALGYLF 150
Query: 191 ------------------SNSLSTAITIPAVSPAEASELASKYC-KLGFSTLKLNVGR-N 230
++ A++P + LA + GF KL G
Sbjct: 151 LLGDPDKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVLR 210
Query: 231 ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-W 289
+ D ++A+H P LD N + +EAV VL + + E P ++ +
Sbjct: 211 GEEEADCIRALHEAFPEARLALDPNGAWKLDEAVRVLEPIKH---LLSYAEDPCGQEGGF 267
Query: 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKA 349
SG ++ F + T G+ + +Q +Q N + + + G + + +
Sbjct: 268 SGRETMAEFKKRT-GLPTATNMIATDYKQLQYAVQLNSVDIPLADCHFWTMQGAVAVGEL 326
Query: 350 TRKSGLHLMIDGMIETRLATGFALHLAAGL 379
+ G+ ++ H+AA
Sbjct: 327 CNEWGMTWGSHSNNHFDISLAMMTHVAAAC 356
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* Length = 393 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 46/292 (15%), Positives = 94/292 (32%), Gaps = 25/292 (8%)
Query: 71 EGRELNVALSAPLSLG------LSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK 124
+ L+ P+S + + + +E + G G G + G
Sbjct: 19 RISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGF-SYSKRAGGPGQF 77
Query: 125 ALVKVREACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSID 180
A + E L P+ + D++ ++AL D A
Sbjct: 78 AHAR--EIAPALIGEDPSDIAKLWDKLCWAGASAGRSGLSTQAIGAFDVALWDLKAKRAG 135
Query: 181 IPLWRLFGGASNSL---STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFD 236
+ L +L G +S+ +T+ + AS + G +KL VG+ + D
Sbjct: 136 LSLAKLLGSYRDSVRCYNTSGGFLHTPIDQLMVNASASIERGIGGIKLKVGQPDGALDIA 195
Query: 237 VLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295
+ A+ + ++DAN+ + A + V E+P+ D G +
Sbjct: 196 RVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFN--LVWIEEPLDAYDHEGHAAL 253
Query: 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
+ + E S + +++ A + + G+ L+I
Sbjct: 254 ----ALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKI 301
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} Length = 372 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 47/286 (16%), Positives = 90/286 (31%), Gaps = 30/286 (10%)
Query: 80 SAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-Q 138
S +S S+ + V ++ S+G G+G + D+ L +
Sbjct: 17 SESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSDRLITSCISDCYAPLLLGE 76
Query: 139 SPPTTLNFALDEIARILPGSEF--------ASVRA--GVEMALIDAVANSIDIPLWRLFG 188
+ L + A V++AL D A +PLW G
Sbjct: 77 DA-----SDHSRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLG 131
Query: 189 GASNS-----LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI- 241
GA + + + + A + GF+ LK+ VG + D L A+
Sbjct: 132 GARTAGVEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLTAVR 191
Query: 242 HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
V +D N + D+ FE+P+ DD + +
Sbjct: 192 ERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLD--IYWFEEPLWYDDVTSHARL----AR 245
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQI 346
I + E +++ + + + V + + G+ +Q+
Sbjct: 246 NTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQV 291
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* Length = 389 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 61/307 (19%), Positives = 117/307 (38%), Gaps = 51/307 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARI--- 154
+ V G G G + K ++ Q + + P I +
Sbjct: 38 VEVRTDEGVTGVGSPSG--PYDLAVLKRAIEDVIGPQLIGEDP--------ANINYLWHK 87
Query: 155 --------LPGSEFASVRA--GVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-- 202
G + A GV++AL D +++ P+++L GG ++ + A
Sbjct: 88 VFHGEVSRNLGHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRG----VRAYA 143
Query: 203 ------VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDAN 255
++P +A++ + + + GF+ KL VGR D L+A+ V ++DAN
Sbjct: 144 SSIYWDLTPDQAADELAGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDAN 203
Query: 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS 315
+ +A+ +L L++ G FE+P+ DD G + A+ T + + E+ +
Sbjct: 204 QSLGRHDALAMLRILDEAG--CYWFEEPLSIDDIEGHRILR--AQGT-PVRIATGENLYT 258
Query: 316 LNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGL----HLMIDGMIETRLATG 370
N ++ + V+ ++ G+ L I + + L H D +
Sbjct: 259 RNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWNPHTFNDI-----ITVA 313
Query: 371 FALHLAA 377
LHL A
Sbjct: 314 ANLHLVA 320
|
| >2ppg_A Putative isomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.49A {Sinorhizobium meliloti} Length = 399 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 8e-18
Identities = 58/295 (19%), Positives = 112/295 (37%), Gaps = 31/295 (10%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARI--- 154
+R+E NG VGWGE LV T ++ A + + P + A I
Sbjct: 57 VRIETENGAVGWGET--YGLVAPRATMEIIDDLLADFTIGRDP--------FDAAAIHDD 106
Query: 155 ---------LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-SLST-AITIPAV 203
G + A +++AL D +P+ +L GG ++ +P
Sbjct: 107 LYDLMRVRGYTGGFYVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYISGLPED 166
Query: 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGYTSEE 262
+ A+ +ELA+ + GFS+ K ++ + + P D + +T+ E
Sbjct: 167 TRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHWAHTASE 226
Query: 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322
AV ++ + G E PV +D GL V A ++ E R+++D+
Sbjct: 227 AVALIKAMEPHG--LWFAEAPVRTEDIDGLARV---AASV-STAIAVGEEWRTVHDMVPR 280
Query: 323 MQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+ ++V ++ G+ ++I + ++ I + +L +A
Sbjct: 281 VARRALAIVQPEMGHKGITQFMRIGAYAHVHHIKVIPHATIGAGIFLAASLQASA 335
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* Length = 455 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 2e-17
Identities = 48/327 (14%), Positives = 104/327 (31%), Gaps = 58/327 (17%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILPG 157
+ + ++G G GE + + EA + P + LN ++++
Sbjct: 42 VILTDNSGHTGVGEAPGGATIEN-------ALTEAIPHVVGRPISILNKIVNDMHNGYLD 94
Query: 158 SEFA-------------SVRAGVEMALIDAVANSIDIPLWRLFGG--------------- 189
+++ + A +E AL+D + + +P+ L G
Sbjct: 95 ADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRDEVTVLGYLFY 154
Query: 190 ----------------ASNSLSTAITIPAVSPAEASELASKYCK-LGFSTLKLNVGR-NI 231
+ A+ ELA+ GF KL G
Sbjct: 155 VGDDKITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGVFEG 214
Query: 232 TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
+ + D + + P LD N ++ +EA+++ LND + E P ++
Sbjct: 215 SKEIDTVIELKKHFPDARITLDPNGCWSLDEAIQLCKGLND---VLTYAEDPCIGENGYS 271
Query: 292 LHDV-SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKAT 350
++ + F R T GI + + ++ + + + + G ++ +
Sbjct: 272 GREIMAEFRRRT-GIPTATNMIATNWREMCHAIMLQSVDIPLADPHFWTLTGASRVAQLC 330
Query: 351 RKSGLHLMIDGMIETRLATGFALHLAA 377
+ GL ++ H+ A
Sbjct: 331 NEWGLTWGCHSNNHFDISLAMFSHVGA 357
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} Length = 391 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 46/298 (15%), Positives = 107/298 (35%), Gaps = 35/298 (11%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
I++ +G GWGE A ++K E + + I
Sbjct: 39 IKITTEDGIEGWGE-AFSINFREKGIAIIIK--ELFREISNIPN--------LSIKSFYN 87
Query: 156 ---------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSL----STAITIPA 202
G +F+S + +E+AL D ++PL L + +T +
Sbjct: 88 KISLLSDGHRGLDFSSATSAIEIALWDISGKLKNLPLNSLLTKSPKPNVPIYATCWSDLK 147
Query: 203 VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI-HAVHPHCSFILDANEGYTS 260
+ K+ + +K+ +++ ++ + V +LD
Sbjct: 148 KDTNDYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDL 207
Query: 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQ 320
++ L +++ P E+PV ++ S L ++ ++T+ + VV E L +
Sbjct: 208 DQTKSFLKEVSSFN--PYWIEEPVDGENISLLTEI----KNTFNMKVVTGEKQSGLVHFR 261
Query: 321 KVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+++ N A + N ++ G++ ++I +G+ + ++ LH+ +
Sbjct: 262 ELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPHCWNSMSVSASAMLHVCS 319
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* Length = 392 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 52/349 (14%), Positives = 100/349 (28%), Gaps = 67/349 (19%)
Query: 61 ETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG 120
E + +RA A + + V I +G G+G +
Sbjct: 18 EFAKLTGERARS--------AGANGRIGVHGKSCTVDIARITIDGQTGYGSSIHM----- 64
Query: 121 DQTKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSID 180
E + + ++ G + R +E ++D +
Sbjct: 65 --------TPEWAEDVIGRRLL-------DLFDD-RGRLREAYRLQLEYPVLDWLGQRQG 108
Query: 181 IPLWRLFGGASNSLSTAITIPA----------------VSPAEASELASKYCKLGFSTLK 224
P++ L GA ++ +P + A E A + G K
Sbjct: 109 KPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVALMQEEAMQGYAKGQRHFK 168
Query: 225 LNVGR---------NITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274
+ VGR D +++ I P ++DAN Y EVL L+D+
Sbjct: 169 IKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN 228
Query: 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334
E+ H D+ + + + E S + + V+
Sbjct: 229 --LYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASP-HLIEWATRGRVDVLQYD 285
Query: 335 LAKFGVLGTLQIIKATRKSGL----HLMIDGMIETRLATGFALHLAAGL 379
+ G +++ + GL H + + HL+A +
Sbjct: 286 IIWPGFTHWMELGEKLDAHGLRSAPHCYGNA-----YGIYASGHLSAAV 329
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A Length = 388 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 65/312 (20%), Positives = 109/312 (34%), Gaps = 59/312 (18%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+RV +G GWG+V+ D T ++ R+ ++ Q LD++ I+
Sbjct: 39 VRVTTQDGAQGWGQVSTYH---ADITCTVL-HRQVAPWMLGQDI-----TDLDDLLDIVT 89
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSL---STAITIPAVSPA 206
PGS AGV+ A+ D P+ + GG + ++++
Sbjct: 90 EREHKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRDITPRD 149
Query: 207 EASELASKYCKLGFSTLKLNVGRNITADFD--------VLQAI-HAVHPHCSFILDANEG 257
EA L GF+ K+ G + + D ++ + + ++DAN
Sbjct: 150 EAERLKRLRDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSC 209
Query: 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLN 317
YT + A+EV L D G FE+P + + V D I V E L
Sbjct: 210 YTPDRAIEVGHMLQDHG--FCHFEEPCPYWELAQTKQV----TDALDIDVTGGEQDCDLP 263
Query: 318 DVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETR----------- 366
Q+++ +V + G G I T + + M
Sbjct: 264 TWQRMIDMRAVDIVQPDILYLG--G----ICRTLR------VVEMARAAGLPVTPHCANW 311
Query: 367 -LATGFALHLAA 377
L T F +HL
Sbjct: 312 SLVTLFTMHLLR 323
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A Length = 441 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 1e-15
Identities = 63/344 (18%), Positives = 108/344 (31%), Gaps = 76/344 (22%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
V +R + + G+G V + QT A V + + + L AR L
Sbjct: 37 VVLRTDGAEDLAGYGLVFTIGRGNDVQTAA---VAALAEHVVGLSVDKVIADLGAFARRL 93
Query: 156 PGSEFASVR-----------AGVEMALIDAVANSIDIPLWRLFGGASN------------ 192
V A D A + + PLWR +
Sbjct: 94 TNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYL 153
Query: 193 ---------------------------------SLSTAITIPAVSPAEASELASKYCKLG 219
+ +T+ S + LA + G
Sbjct: 154 SDALTRDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADG 213
Query: 220 FSTLKLNVGRNITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278
F T+KL VG N+ D + A+ P + +DAN+ + A++ + +L +
Sbjct: 214 FRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFD--IA 271
Query: 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338
E+P DD G + + + V E ++ ++++Q ++ I A+
Sbjct: 272 WIEEPTSPDDVLGHAAI---RQGITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARV 328
Query: 339 -GVLGTLQIIKATRKSGL----HLMIDGMIETRLATGFALHLAA 377
GV L I+ K G+ H G+ E HLA
Sbjct: 329 GGVNENLAILLLAAKFGVRVFPHAGGVGLCEL------VQHLAM 366
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* Length = 393 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 47/222 (21%), Positives = 82/222 (36%), Gaps = 32/222 (14%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+R+ +G VGWGE + P++ G + +V R+ FL Q + +
Sbjct: 28 VRITAEDGTVGWGEAS--PMLGGIASLGVV-ARDIAPFLEGQEV-----LDHAVLLDRMM 79
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNS-----LSTAITIPAV 203
P + A ++AL D + P+++L GGA + S
Sbjct: 80 HRLVKLGPEGIATAALAACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAARS 139
Query: 204 SPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQAI-HAVHPHCSFILDAN 255
E+A + + +K+ +I D +A+ + P DAN
Sbjct: 140 VDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDAN 199
Query: 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297
GY+ A+ V L D+G FE+PV + +V+
Sbjct: 200 NGYSVGGAIRVGRALEDLG--YSWFEEPVQHYHVGAMGEVAQ 239
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} Length = 374 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 49/256 (19%), Positives = 88/256 (34%), Gaps = 36/256 (14%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR----QSPPTTLNFALDEIAR 153
++V G VG GE PLV +A R ++ EI R
Sbjct: 31 VKVHTDKGIVGVGEADSSPLVVQACIEAPQTNFYCNGLKRLLIGENA--------LEIER 82
Query: 154 I---------LPGSEFASVRA--GVEMALIDAVANSIDIPLWRLFGGASN-SLST-AITI 200
+ G A + A +++AL D +P+ L GG + I
Sbjct: 83 LWNKMYWGSNYMGRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLGGKYRDKIRCYGTFI 142
Query: 201 PAVSPAEASELASKYCKLGFSTLKLNVGR---NITADFDVLQAIH-AVHPHCSFILDANE 256
PA P + + GFS++K G + D+ +++A+ A P +D
Sbjct: 143 PADKPEDNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLAS 202
Query: 257 G-YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS 315
+T + + +L + E+PV D + + ES +
Sbjct: 203 KWHTCGHSAMMAKRLEEFN--LNWIEEPVLADSLISYEKL----SRQVSQKIAGGESLTT 256
Query: 316 LNDVQKVMQENLASVV 331
+ Q+ + ++ A +V
Sbjct: 257 RYEFQEFITKSNADIV 272
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A Length = 405 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 6e-14
Identities = 51/275 (18%), Positives = 89/275 (32%), Gaps = 62/275 (22%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
++VE G GWGE + + T+ A+ E++ L
Sbjct: 19 LKVETDEGVTGWGEPVI-----------------------EGRARTVEAAVHELSDYLIG 55
Query: 156 --------------------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-SL 194
G S AG++ AL D + +P++ L GG +
Sbjct: 56 QDPSRINDLWQTMYRAGFYRGGPILMSAIAGIDQALWDIKGKVLGVPVYELLGGLVRDKM 115
Query: 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVG---------RNITADFDVLQAIH-AV 244
T + PA+ GF KLN R + A + I A
Sbjct: 116 RTYSWVGGDRPADVIAGMKALQAGGFDHFKLNGCEEMGIIDTSRAVDAAVARVAEIRSAF 175
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
F LD + ++ A ++ +L P+ E+PV + +
Sbjct: 176 GNTVEFGLDFHGRVSAPMAKVLIKELEPYR--PLFIEEPVLAEQAETYARL----AAHTH 229
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
+ + A E S D ++V++ S++ L+ G
Sbjct: 230 LPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAG 264
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A Length = 433 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 8e-14
Identities = 49/275 (17%), Positives = 100/275 (36%), Gaps = 45/275 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
+++ +G GWGE V + +A+++ A ++P ++ + R +
Sbjct: 27 VKLTTDDGITGWGE-CYAASVGPEAMRAVIEDVFARHMEGENP-----ENIELMFRRVYS 80
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-----------SLSTAI 198
P +G+E+A D + + P+W L GG N I
Sbjct: 81 SGFTQRPDLTAIGAFSGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHHPI 140
Query: 199 TIPAVSPAEASELASKYCKLGFSTLKLNVG-------------RNITADFDVLQAIH-AV 244
T S A+E A+ G++ +K + +I+ + + I AV
Sbjct: 141 TPFWTSADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAV 200
Query: 245 HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304
+ + +T+ A+ + + P+ +E+PV D+ + V
Sbjct: 201 GDKADLLFGTHGQFTTAGAIRLGQAIEPYS--PLWYEEPVPPDNVGAMAQV----ARAVR 254
Query: 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
I V E + + V++E A+++ L + G
Sbjct: 255 IPVATGERLTTKAEFAPVLREGAAAILQPALGRAG 289
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 Length = 382 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-14
Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 49/232 (21%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVK--------------VREACQFLRQSPP 141
+ V +G G +V + VK ++ + R S
Sbjct: 36 AMLTVRTEDGQEGHSF-TAPEIVRPHVIEKFVKKVLIGEDHRDRERLWQDLAHWQRGSAA 94
Query: 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG--------ASNS 193
+ L A V+ AL D S+ P+++L GG S
Sbjct: 95 QLTDRTL----------------AVVDCALWDLAGRSLGQPVYKLIGGYRDKVLAYGSIM 138
Query: 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQAI-HAVH 245
+ +P + A K G+ +KL+ ++ D A+ AV
Sbjct: 139 CGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVG 198
Query: 246 PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297
P ++DA Y+ +A+ + L +G E+P+ S +S+
Sbjct: 199 PDIRLMIDAFHWYSRTDALALGRGLEKLG--FDWIEEPMDEQSLSSYKWLSD 248
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} Length = 412 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 9e-14
Identities = 47/274 (17%), Positives = 93/274 (33%), Gaps = 44/274 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
++++ +G G GE+ + V E L + P ++ + R
Sbjct: 26 VKLKTDDGIEGVGEIYSATFGPKAMAPIIDDVFERH-LLNRDP-----HHVERLFRQAYS 79
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN----------SLSTAIT 199
P V +G+EMA D + + P++ L GG + +
Sbjct: 80 SGFTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKNAKGE 139
Query: 200 IPAVSPAEASELASKYCKLGFSTLKLNVG-------------RNITADFDVLQAIH-AVH 245
P A+E A++ KLGF+ +K + + + + AV
Sbjct: 140 YDYDDPDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVG 199
Query: 246 PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305
+ + A+ + +L P+ FE+PV + V I
Sbjct: 200 SKADLLFGTHGQMVPSSAIRLAKRLEKYD--PLWFEEPVPPGQEEAIAQV----AKHTSI 253
Query: 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
+ E + + K++Q AS++ + +A+ G
Sbjct: 254 PIATGERLTTKYEFHKLLQAGGASILQLNVARVG 287
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A Length = 412 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 43/255 (16%), Positives = 89/255 (34%), Gaps = 35/255 (13%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARI 154
+ VE +G +G G A+ P V V + + P F I
Sbjct: 70 LTCEVETEDGTIGIGNAALAPSVV-----KKVIDDWYAPLVIGEDP-----FDYAYIWEK 119
Query: 155 L--------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-SLST-AITIPAVS 204
+ + + +++A+ D + + P+++L GG + + + A S
Sbjct: 120 MYRRSHAWGRKGIGMTAISAIDIAIWDLMGKLVGKPVFKLLGGRTKDRIPVYYSKLYAGS 179
Query: 205 PAEASELASKYCKLGFSTLKLNVG-------RNITADFDVLQAI-HAVHPHCSFILDANE 256
+ A + K G+ K G + + ++A+ + +L+
Sbjct: 180 IEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYM 239
Query: 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL 316
G+ + A +L KL P E+PV DD +G ++ + + E S+
Sbjct: 240 GWNLDYAKRMLPKLAPYE--PRWLEEPVIADDVAGYAEL---NAMN-IVPISGGEHEFSV 293
Query: 317 NDVQKVMQENLASVV 331
+++ SV+
Sbjct: 294 IGCAELINRKAVSVL 308
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} Length = 392 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 43/266 (16%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
+ + G G GE + V G ++K + + P ++E+ +
Sbjct: 23 VEISTDEGITGAGEAGIAYGVGGTAAAGMIKDLSERFLIGKDP-----SRIEELWSTMYD 77
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSL----STAITIPAVS 204
G+ + + +E AL D + +P++ LFGG + A +
Sbjct: 78 HSFWAKNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADT 137
Query: 205 PAEASELASKYCKLGFSTLKLNVG------------------RNITADFDVLQAI-HAVH 245
P E + + K G+ LK I + ++A+ A
Sbjct: 138 PDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAG 197
Query: 246 PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305
P ++D + G T++E + K+ ++ E+P D L + + +
Sbjct: 198 PEIELMVDLSGGLTTDETIRFCRKIGELD--ICFVEEPCDPFDNGALKVI----SEQIPL 251
Query: 306 SVVADESCRSLNDVQKVMQENLASVV 331
+ E + +K+ + ++
Sbjct: 252 PIAVGERVYTRFGFRKIFELQACGII 277
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} Length = 441 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 52/309 (16%), Positives = 90/309 (29%), Gaps = 64/309 (20%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
V I + +G G G + V + + R L
Sbjct: 40 VVIETDAEDGIKGCGI-TFTLGKGTEVVVCAVNALA--HHVLNKDLKDIVGDFRGFYRQL 96
Query: 156 PGSEFASVR-----------AGVEMALIDAVANSIDIPLWRLFGGASN------------ 192
A V A+ D A P+W+L
Sbjct: 97 TSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVDMDPRMLVSCIDFRYI 156
Query: 193 ---------------------------------SLSTAITIPAVSPAEASELASKYCKLG 219
+ +T+ S +L ++ K G
Sbjct: 157 TDVLTEEDALEILQKGQIGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQALKDG 216
Query: 220 FSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278
++ K+ VG ++ D Q I + P + ++DAN+ + EAVE + KL P+
Sbjct: 217 WTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMSKLAKFK--PL 274
Query: 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338
E+P DD G +S GI + E C + ++++Q + I +
Sbjct: 275 WIEEPTSPDDILGHATISKALVPL-GIGIATGEQCHNRVIFKQLLQAKALQFLQIDSCRL 333
Query: 339 -GVLGTLQI 346
V L +
Sbjct: 334 GSVNENLSV 342
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} Length = 394 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 40/265 (15%), Positives = 80/265 (30%), Gaps = 45/265 (16%)
Query: 98 IRVELSNGCVGWGEV---AVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIAR 153
++V NG G GE + + + + + P E
Sbjct: 29 VKVTDENGVYGLGEADGPPECMKAFSEIENEHKWLNNIKEAVIGRDP--------LEFRA 80
Query: 154 I---------LPGSEFASVRA--GVEMALIDAVANSIDIPLWRLFGGASNS--------- 193
G + A G++MAL D + +P ++L GGA +
Sbjct: 81 NYNRMYDTTKWIGMRGLGLFAISGIDMALYDLAGKQLGVPAYKLMGGAQKAQLTPYFTLY 140
Query: 194 -LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG----RNITADFDVLQAI-HAVHPH 247
A + L +K + G +K+ + + L+ + +
Sbjct: 141 PSVAADATLSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWD 200
Query: 248 CSFILDANEGYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGIS 306
++D +T + + L D+ E + DD G + A
Sbjct: 201 MDMMVDCLYRWTDWQKARWTFRQLEDID--LYFIEACLQHDDLIGHQKL---AAAI-NTR 254
Query: 307 VVADESCRSLNDVQKVMQENLASVV 331
+ E + + Q+ +++ SVV
Sbjct: 255 LCGAEMSTTRFEAQEWLEKTGISVV 279
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A Length = 415 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 36/258 (13%), Positives = 78/258 (30%), Gaps = 41/258 (15%)
Query: 58 NLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL 117
+ W+D A ++ S + + + + VE N G+
Sbjct: 36 DQGGNHWIDDHIA--TPMSKYRDYEQSRQSFGINVLGTLIVEVEAENRQTGFAVS----- 88
Query: 118 VTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARILPGSEFASVR---------AGV 167
G+ +V + +F+ + + I + G+ + V
Sbjct: 89 TAGEMGCFIV-EKHLNRFIEGKCV-----SDIKLIHDQMLGATMYYSGSGGLVMNTISCV 142
Query: 168 EMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNV 227
++AL D + +P+++L GGA I + +LA ++GF K+
Sbjct: 143 DLALWDLFGKVVGLPVYKLLGGAVRD-----EIQFYATGARPDLA---KEMGFIGGKMPT 194
Query: 228 G-------RNITADFDVLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279
I D ++ + P +LD A ++
Sbjct: 195 HWGPHDGDAGIRKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFN--LKW 252
Query: 280 FEQPVHRDDWSGLHDVSN 297
E+ + + G ++
Sbjct: 253 IEECLPPQQYEGYRELKR 270
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} Length = 404 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 7e-12
Identities = 44/281 (15%), Positives = 90/281 (32%), Gaps = 52/281 (18%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+++ + G G+GE+ K V + + P ++++
Sbjct: 27 VKLVTACGITGYGEIYNATFGPDLVAKMAEDV--FARQFAGEDP-----HHIEKLWHKTY 79
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN---------------- 192
P V +G+EMA D + + P + L GG +
Sbjct: 80 GAGYTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLGGKVHERLRSYTYLYPTDGDV 139
Query: 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-------------RNITADFDVLQ 239
A+E A+K GF+ +K + ++ +
Sbjct: 140 YPDPDKPNVYNDADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCK 199
Query: 240 AIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298
I AV + + +T A + +L P+ FE+P+ + + +V
Sbjct: 200 QIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYD--PLWFEEPIPPEKPEDMAEV--- 254
Query: 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
I V E + + +V++ AS++ + L + G
Sbjct: 255 -ARYTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVG 294
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* Length = 404 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 41/256 (16%), Positives = 84/256 (32%), Gaps = 46/256 (17%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARI 154
+ + +E S+G VG+ G+ +V + +FL +I RI
Sbjct: 61 LVVEIEASDGNVGFAVT-----TGGEPAAYIV-EKHLARFLEGARV--------TDIERI 106
Query: 155 -----------LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV 203
+ +GV++AL D + P+ +L GGA +
Sbjct: 107 WDQMYNSTLYYGRKGLVINTISGVDLALWDLLGKVRREPVHQLLGGAVRD-----ELQFY 161
Query: 204 SPAEASELASKYCKLGFSTLKLNVG-------RNITADFDVLQAI-HAVHPHCSFILDAN 255
+ +LA K+GF K+ + + + + L + V P + D
Sbjct: 162 ATGARPDLA---QKMGFIGGKMPLHHGPSEGEEGLKKNLEELATMRERVGPDFWLMFDCW 218
Query: 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS 315
A + + G E+ + DD+ G ++ G+ V E +
Sbjct: 219 MSLDLNYATRLARGAREYG--LKWIEEALPPDDYWGYAELRR--NAPTGMMVTTGEHEAT 274
Query: 316 LNDVQKVMQENLASVV 331
+ +++ ++
Sbjct: 275 RWGFRMLLEMGCCDII 290
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A Length = 455 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 36/268 (13%), Positives = 78/268 (29%), Gaps = 71/268 (26%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
+ +E ++G VG+ P R L
Sbjct: 67 FLVEIEATDGTVGFATGF-------------------------GGPPACWLVHQHFERFL 101
Query: 156 -----------------------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN 192
+V + +++AL D + + P++RL GGA+
Sbjct: 102 IGADPRNTNLLFEQMYRASMFYGRKGLPIAVISVIDLALWDLLGKVRNEPVYRLIGGATK 161
Query: 193 SLSTAITIPA-VSPAEASELASKYCKLGFSTLKLNVG-------RNITADFDVLQAI-HA 243
+ + E + +GF K+ + + + + L+ A
Sbjct: 162 E-----RLDFYCTGPEPTA----AKAMGFWGGKVPLPFCPDDGHEGLRKNVEFLRKHREA 212
Query: 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303
V P ++D +E++ D+ +E+ + DD G + R
Sbjct: 213 VGPDFPIMVDCYMSLNVSYTIELVKACLDLN--INWWEECLSPDDTDGFALI---KRAHP 267
Query: 304 GISVVADESCRSLNDVQKVMQENLASVV 331
+ E S +K+++ ++
Sbjct: 268 TVKFTTGEHEYSRYGFRKLVEGRNLDII 295
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} Length = 403 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 50/241 (20%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
++V G G GE + V G ++K + L + P F + I L
Sbjct: 26 VKVSTDEGIYGLGEAGIAYGVGGSAAAGILK--DYAALLIGEDP-----FNTEAIWEKLF 78
Query: 156 --------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-----------SLST 196
G+ S + ++A D ++++P+++L GG +
Sbjct: 79 KKTFWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLGGKNREDLRVYASQLQFGWG 138
Query: 197 AITIPAVSPAEASELASKYCKLGFSTLKLNVG-------------------RNITADFDV 237
E +E A K G+ +K++V I +
Sbjct: 139 KERKSKGRKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVER 198
Query: 238 LQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296
++AI AV P I++ + A++ + + +E+ + L +
Sbjct: 199 VEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFN--IFFYEEINTPLNPRLLKEAK 256
Query: 297 N 297
Sbjct: 257 K 257
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* Length = 410 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 41/288 (14%), Positives = 96/288 (33%), Gaps = 59/288 (20%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
IRV +G G GEV + +++ + + + P +++I
Sbjct: 30 IRVNTDSGLSGIGEVGLAYGAGAKAGVGIIR--DLAPLIVGEDP-----LNIEKIWEFFF 82
Query: 156 --------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN-----------SLST 196
G+ F + + +++AL D + +P+++L GG +N
Sbjct: 83 RKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWG 142
Query: 197 AITIPAVSPAEASELASKYCKLGFSTLKLNVG------------------------RNIT 232
V+P E +E A G+ +K++ +
Sbjct: 143 DKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLK 202
Query: 233 ADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
+ A+ A+ I++ + + A++ + L+E+P+H +
Sbjct: 203 MGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYR--IFLYEEPIHPLNSDN 260
Query: 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
+ V + I + E + ++++++ +V L G
Sbjct: 261 MQKV----SRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCG 304
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} Length = 407 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 42/288 (14%), Positives = 94/288 (32%), Gaps = 62/288 (21%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-------REAC------QFLRQSPPTTL 144
+++ G G+GEV + V + K + + + +
Sbjct: 30 VKINTDEGISGFGEVGLAYGVGASAGIGMAKDLSAIIIGMDPMNNEAIWEKMLKKT---- 85
Query: 145 NFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN------------ 192
G F++ +G+++AL D + +PL+++ GG S
Sbjct: 86 ------FWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQF 139
Query: 193 -SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG-------------------RNIT 232
+ P + ++ A G+ +K++ + +
Sbjct: 140 GWGDGSDKDMLTEPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILR 199
Query: 233 ADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291
+D + AI AV P I + + + A++ + ++G +E+PV + +
Sbjct: 200 LGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELG--IFYYEEPVMPLNPAQ 257
Query: 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
+ V D I + A E + ++ SV+ + G
Sbjct: 258 MKQV----ADKVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCG 301
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A Length = 394 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 36/262 (13%), Positives = 79/262 (30%), Gaps = 39/262 (14%)
Query: 98 IRVELSNGCVGWGEVAV---VPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIAR 153
++V NG G GE L + + + + P ++ I
Sbjct: 34 VKVTDENGVYGLGEADGSPDAILAYANIETEHKWLTNITEKAIGRLP-----IEINAIWD 88
Query: 154 IL--------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN----------SLS 195
+ +G++MAL D + +P ++L GG +
Sbjct: 89 AMYDATQWQGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKDKVHPYLTLYPAI 148
Query: 196 TAITIPAVSPAEASELASKYCKLGFSTLKLNVG----RNITADFDVLQAI-HAVHPHCSF 250
V+ + L K +K+ V + L+ + +
Sbjct: 149 PVDASLDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDM 208
Query: 251 ILDANEGYTS-EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309
++D +T E +L + D+ E + DD SG + +T +
Sbjct: 209 MVDYLYRFTDWYEVARLLNSIEDLE--LYFAEATLQHDDLSGHAKL---VENT-RSRICG 262
Query: 310 DESCRSLNDVQKVMQENLASVV 331
E + + ++ + + ++
Sbjct: 263 AEMSTTRFEAEEWITKGKVHLL 284
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} Length = 422 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 37/271 (13%), Positives = 81/271 (29%), Gaps = 54/271 (19%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQT-KALVKVREACQFLRQSPPTTLNFALDEIARIL- 155
+RV G G G K LV + + ++++ +++
Sbjct: 47 VRVTTEQGITGHGCAT---FQQRPLAVKTLVDEYLQPLMIGRDA-----NNIEDLWQMMN 98
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVSP 205
G + +GV+MAL D +PL++LFGG S AI +
Sbjct: 99 VNAYWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSR---DAIPAYSHASGETL 155
Query: 206 AEASELASKYCKLGFSTLKLNVG------------------------RNITADFDVLQAI 241
G+ ++ +G ++ ++ A+
Sbjct: 156 EALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHAL 215
Query: 242 -HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300
+ D +E ++AV++ +L P E + + L V +
Sbjct: 216 REKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQ--PYFIEDILPPQQSAWLEQV---RQ 270
Query: 301 DTYGISVVADESCRSLNDVQKVMQENLASVV 331
+ + + E + + ++ +
Sbjct: 271 QS-CVPLALGELFNNPAEWHDLIVNRRIDFI 300
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 3s47_A 3gy1_A Length = 401 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 52/270 (19%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL-- 155
+ VE + G G+G K +V + ++ ++++ +++
Sbjct: 26 VVVETNEGVTGFGCATF--QQRPLAVKTMVDEYLKPILIGKNA-----NNIEDLWQMMMV 78
Query: 156 -----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVSPA 206
G + +GV+MAL D A +PL +LFGG S AI + +
Sbjct: 79 NAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSR---DAIPVYTHATSDTME 135
Query: 207 EASELASKYCKLGFSTLKLNVG------------------------RNITADFDVLQAIH 242
+L + + G+ ++ +G + + + +++
Sbjct: 136 GIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLR 195
Query: 243 -AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
+ D +E +A++ ++ P E + + L ++ R
Sbjct: 196 EKYGNQFHILHDVHERLFPNQAIQFAKEVEQYK--PYFIEDILPPNQTEWLDNI----RS 249
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVV 331
+S+ E + + + ++ +
Sbjct: 250 QSSVSLGLGELFNNPEEWKSLIANRRIDFI 279
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* Length = 440 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 55/230 (23%)
Query: 156 PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVSPAEASEL 211
G + +G++MAL D +P++ L GG I E +
Sbjct: 106 NGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCR---DGIALYVHTDGADEVEVEDS 162
Query: 212 ASKYCKLGFSTLKLNVG-----------------------------------------RN 230
A + G+ ++ +G
Sbjct: 163 ARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAY 222
Query: 231 ITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289
+ + + + + DA+E T A+ + L E PV ++
Sbjct: 223 AKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQ--LFFLEDPVAPENT 280
Query: 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
L + R + E ++N+ + ++ L + ++ G
Sbjct: 281 EWLKML----RQQSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIG 326
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} Length = 410 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 4e-08
Identities = 39/255 (15%), Positives = 70/255 (27%), Gaps = 76/255 (29%)
Query: 98 IRVELSNGCVGWGEV-------AVVPLVTGDQTKALVKVREACQ------------FLRQ 138
+RV + G GE + +V + + +
Sbjct: 25 VRVWAGDE-HGLGECYPSAPAAGIHHIV--MNMEEQLLGEDPRDVERLYEKMRRWNIFTG 81
Query: 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN------ 192
+ AL +G+E AL D +P++RL GGA
Sbjct: 82 GQAGAVITAL----------------SGIETALWDLAGKLQGVPVYRLLGGAFRRRVRLY 125
Query: 193 ------------SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG------------ 228
S E +A + + GF +KL+V
Sbjct: 126 ADCNAGTVDAAAHHIEGGLFEEGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWN 185
Query: 229 -----RNITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282
R A + A+ AV P +D + + ++ + G + E+
Sbjct: 186 GAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFG--LLWLEE 243
Query: 283 PVHRDDWSGLHDVSN 297
P ++ L +V
Sbjct: 244 PTPPENLDALAEVRR 258
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* Length = 409 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 42/285 (14%), Positives = 80/285 (28%), Gaps = 69/285 (24%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVK-VREACQFLR-QSPPTTLNFALDEIARIL 155
+++ G VGW E G + + + + + L S +
Sbjct: 23 VKLTTDEGIVGWSEFDE-----GFGSPGVTAVIEQLGKRLVGASV-----MEHERFFAEA 72
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN---------------S 193
G + +E AL+DA A ++++P + L GG +
Sbjct: 73 YCLTRPATGGVVSEGIGAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRIN 132
Query: 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG------------------------- 228
P A + + F +K N+
Sbjct: 133 HPKFFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVD 192
Query: 229 -RNITADFDVLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286
+ + L+A+ P +LD N E +++L +L D E
Sbjct: 193 RKVLRNLRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFD--LFWVEIDS-- 248
Query: 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331
GL V R+ + + E+ + + + N V
Sbjct: 249 YSPQGLAYV----RNHSPHPISSCETLFGIREFKPFFDANAVDVA 289
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} Length = 410 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 38/286 (13%), Positives = 82/286 (28%), Gaps = 68/286 (23%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+ VE +G G GE +A++ + + ++ + I+ L
Sbjct: 23 VEVETEDGLTGLGET----FRGAQAVEAVL-HEQTAPAIIGRAA-----ENITSISSELL 72
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN---------------- 192
S + V++AL D +PL GGA+
Sbjct: 73 NPYVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALGGAARDRVPVYATCAGYDFNT 132
Query: 193 ------------SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN---------- 230
+ +A LA G++ +K+ +
Sbjct: 133 SLGGRRSIGSAELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHIS 192
Query: 231 ---ITADFDVLQAI-HAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286
+ + + I AV + + + + + A + L D G + E P+ +
Sbjct: 193 LTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYG--VLWVEDPIAK 250
Query: 287 -DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331
D+ + D+ R + E+ +++ + V
Sbjct: 251 MDNIPAVADL----RRQTRAPICGGENLAGTRRFHEMLCADAIDFV 292
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4fi4_A 3thu_A Length = 425 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 25/181 (13%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREAC--QFLRQSPPTTLNFALDEIARIL 155
+++ +G G G+ + G + + +++ + + +++I +
Sbjct: 43 LKITTEDGITGVGDATL----NGRELSVVSFLQDHMVPSLIGRDA-----HQIEDIWQFF 93
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVS 204
G + A V+MAL D +P+++L GGA T + +
Sbjct: 94 YRGSYWRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGGACR---TGVTVYGHANGET 150
Query: 205 PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAV 264
+ A KY +G+ ++L G A + + L +++ + +
Sbjct: 151 IEDTIAEAVKYKAMGYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYL 210
Query: 265 E 265
Sbjct: 211 N 211
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A Length = 424 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 40/289 (13%), Positives = 85/289 (29%), Gaps = 65/289 (22%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREAC--QFLRQSPPTTLNFALDEIARIL 155
+++ G G G+ + G + + + + + + P +++I +
Sbjct: 42 LKIVTDQGIYGIGDATL----NGREKSVVSYLEDYLIPVLIGRDP-----QQIEDIWQFF 92
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVS 204
G + A +++AL D A ++PL++L GG S I
Sbjct: 93 YRGAYWRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLGGKSR---ERILSYTHANGKD 149
Query: 205 PAEASELASKYCKLGFSTLKLNVG---------------------------------RNI 231
E K G+ +++ G + +
Sbjct: 150 LDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYL 209
Query: 232 TADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290
DV A+ P + D + T EA + L E V ++
Sbjct: 210 NYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYH--LFWMEDAVPAENQE 267
Query: 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG 339
+ R + E S++D ++++Q + + G
Sbjct: 268 SFKLI----RQHTTTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAG 312
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A Length = 400 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 35/251 (13%), Positives = 69/251 (27%), Gaps = 63/251 (25%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+ V G G GE + + V + + P +D +A+ L
Sbjct: 20 VLVHTDEGITGLGETFF----GAETVETYVH-EYIAPRVIGRDP-----LQIDLLAQDLV 69
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASN----------------- 192
+ ++AL D + + P+ +L GG S
Sbjct: 70 GYLGFRSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGGFSRREIRTYNTCAGTEYIKK 129
Query: 193 -----------SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG------------- 228
S A ELA + G + +K+
Sbjct: 130 ATGQQTANYGLSGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKTRGQYIS 189
Query: 229 -RNITADFDVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR 286
++ + + + I AV +++ + + A+++ L E P+
Sbjct: 190 MPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQ--TFWHEDPIKM 247
Query: 287 DDWSGLHDVSN 297
D S L +
Sbjct: 248 DSLSSLTRYAA 258
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* Length = 418 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 38/247 (15%), Positives = 70/247 (28%), Gaps = 61/247 (24%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREAC--QFLRQSPPTTLNFALDEIARIL 155
+++E G G G+ + G + + ++E + P +++I + +
Sbjct: 36 LKIETDQGVYGIGDATL----NGRELSVVAYLQEHVAPCLIGMDP-----RRIEDIWQYV 86
Query: 156 -------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVS 204
G A V+MAL D A +PL++L GG S I
Sbjct: 87 YRGAYWRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGGRSR---DGIMVYGHANGSD 143
Query: 205 PAEASELASKYCKLGFSTLKLNVGRNITADF----------------------------- 235
AE E Y +G+ ++ G D
Sbjct: 144 IAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKAL 203
Query: 236 ----DVLQAIH-AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290
+ + + + D + YT +EA + L E ++
Sbjct: 204 NYVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQ--LFWLEDCTPAENQE 261
Query: 291 GLHDVSN 297
V
Sbjct: 262 AFRLVRQ 268
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} Length = 426 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 8e-07
Identities = 32/182 (17%), Positives = 67/182 (36%), Gaps = 25/182 (13%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTLNFALDEIARIL- 155
+++ +G G G+ + + A C L + +++I +
Sbjct: 42 LKITTDSGLTGLGDATLNG---RELPVASYLNDHVCPQLIGRDA-----HQIEDIWQYFY 93
Query: 156 ------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI----TIPAVSP 205
G S + V+MAL D A + ++PL++L GGAS T + S
Sbjct: 94 KGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASR---TGVMVYCHTTGHSI 150
Query: 206 AEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH--PHCSFILDANEGYTSEEA 263
E + +K+ GF +++ G + + P L + +++E+
Sbjct: 151 DEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKY 210
Query: 264 VE 265
++
Sbjct: 211 LD 212
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 9e-06
Identities = 64/486 (13%), Positives = 125/486 (25%), Gaps = 170/486 (34%)
Query: 4 VGSALFSPTCNFFFSPCVSRSLHRSQNVIKFCVSNVMAETTTVRTSERTSLGFKNLTETF 63
V L F SP + S + +R L N + F
Sbjct: 83 VEEVL-RINYKFLMSPIKTEQRQPSMMTRMY-------------IEQRDRL--YNDNQVF 126
Query: 64 W-VDVQRAEG-RELNVALSAPLSLGLSSVENV------------------ENVAIRVELS 103
+V R + +L AL L L +NV + ++ ++
Sbjct: 127 AKYNVSRLQPYLKLRQAL-----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 104 NGCVGW---GEVAVVPLVTGDQTKALVKVR-EACQFLRQS--PPTTLNFALDEIARILPG 157
+ W V K L ++ S ++ E+ R+L
Sbjct: 182 FK-IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 158 SEFASVRAGVEMALI--DAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKY 215
+ + L+ V N+ W F +
Sbjct: 241 KPYEN-------CLLVLLNVQNA---KAWNAFNLS------------------------- 265
Query: 216 CKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK-LN--- 271
CK+ +T R D L A H + + T +E +L K L+
Sbjct: 266 CKILLTT------RFK-QVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 272 -D------------MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLN- 317
D + +I + W V + ++ + + S L
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHV-----NCDKLTTIIESSLNVLEP 368
Query: 318 -DVQK------VMQENLASVVNIKLAKFGVLGTL---------QII--KATRKS------ 353
+ +K V + +I +L + ++ K + S
Sbjct: 369 AEYRKMFDRLSVFPPS----AHIPTI---LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 354 -----GLH-LMIDGMIETRLATGFALH--LAAGLGCIKYVNLNTPFLLSEDPFVGGCEVS 405
+ + ++ ++ +L +ALH + K + + D
Sbjct: 422 KESTISIPSIYLE--LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--------- 470
Query: 406 GAIYNF 411
Y+
Sbjct: 471 QYFYSH 476
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 42/244 (17%), Positives = 71/244 (29%), Gaps = 59/244 (24%)
Query: 207 EASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEG-YTSEEAVE 265
E E +Y + L + +FD C + D + + EE
Sbjct: 10 ETGEHQYQYKDI----LSVFE-DAFVDNFD-----------CKDVQDMPKSILSKEEIDH 53
Query: 266 VLGKLNDMGVIPVLFEQPVHRDDW----SGLHDVSNFA----RDTYG--ISVVADESCR- 314
++ + + LF W V F R Y +S + E R
Sbjct: 54 IIMSKDAVSGTLRLF--------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQ 104
Query: 315 -SLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373
S+ + Q + N AK+ V +R + ++E R A +
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNV---------SRLQPYLKLRQALLELRPAKNVLI 155
Query: 374 HLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIY--NFTNARGQGGFLK--WTIVSCT 429
G G K + LS C++ I+ N N L+ +
Sbjct: 156 DGVLGSG--KTW-VALDVCLSYKV---QCKMDFKIFWLNLKNCNSPETVLEMLQKL--LY 207
Query: 430 QVDC 433
Q+D
Sbjct: 208 QIDP 211
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 438 | |||
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 100.0 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 100.0 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 100.0 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 100.0 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 100.0 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 100.0 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 100.0 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 100.0 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 100.0 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 100.0 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 100.0 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 100.0 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 100.0 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 100.0 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 100.0 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 100.0 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 100.0 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 100.0 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 100.0 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 100.0 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 100.0 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 100.0 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 100.0 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 100.0 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 100.0 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 100.0 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 100.0 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 100.0 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 100.0 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 100.0 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 100.0 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 100.0 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 100.0 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 100.0 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 100.0 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 100.0 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 100.0 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 100.0 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 100.0 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 100.0 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 100.0 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 100.0 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 100.0 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 100.0 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 100.0 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 100.0 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 100.0 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 100.0 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 100.0 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 100.0 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 100.0 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 100.0 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 100.0 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 100.0 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 100.0 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 100.0 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 100.0 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 100.0 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 100.0 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 100.0 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 100.0 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 100.0 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 100.0 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 100.0 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 100.0 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 100.0 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 100.0 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 100.0 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 100.0 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 100.0 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 100.0 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 100.0 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 100.0 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 100.0 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 100.0 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 100.0 | |
| 3caw_A | 330 | O-succinylbenzoate synthase; structural genomics, | 100.0 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 100.0 | |
| 4gfi_A | 329 | Mandelate racemase/muconate lactonizing enzyme FA | 100.0 | |
| 1jpd_X | 324 | L-Ala-D/L-Glu epimerase; enolase superfamily, muco | 100.0 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 100.0 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 100.0 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 100.0 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 100.0 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 100.0 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 100.0 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 100.0 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 100.0 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 100.0 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 100.0 | |
| 2ptz_A | 432 | Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypano | 100.0 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 100.0 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 100.0 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 100.0 | |
| 2al1_A | 436 | Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: | 100.0 | |
| 2akz_A | 439 | Gamma enolase, neural; fluoride inhibition, negati | 100.0 | |
| 3qtp_A | 441 | Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Ent | 99.93 | |
| 3otr_A | 452 | Enolase; structural genomics, center for structura | 99.91 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.26 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.1 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.03 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.03 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.02 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 97.92 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 97.84 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 97.81 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 97.56 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 97.45 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 97.37 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.32 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 97.22 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.17 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 96.48 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 96.35 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.33 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 96.04 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 95.66 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 95.4 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 94.93 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 94.74 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 94.58 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 94.46 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 93.4 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 93.29 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 93.13 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 93.05 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 93.03 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 92.66 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 92.63 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 92.37 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 92.15 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 92.13 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 92.11 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 91.67 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 91.22 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 91.18 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 90.12 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 90.05 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 89.38 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 89.28 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 89.23 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 89.17 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 88.91 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 88.24 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 88.0 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 87.35 | |
| 3i4e_A | 439 | Isocitrate lyase; structural genomics, seattle str | 87.07 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 87.04 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 86.86 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 86.74 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 86.16 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 85.85 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 85.69 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 84.59 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 84.55 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 84.25 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 83.72 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 83.57 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 83.56 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 83.08 | |
| 3eol_A | 433 | Isocitrate lyase; seattle structural center for in | 82.41 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 81.93 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 81.72 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 81.46 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 81.44 | |
| 3n2t_A | 348 | Putative oxidoreductase; aldo/keto reductase super | 81.04 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 80.95 | |
| 3lg3_A | 435 | Isocitrate lyase; conserved, CD, proteomics eviden | 80.63 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 80.62 | |
| 1f8m_A | 429 | Isocitrate lyase, ICL; alpha-beta barrel, helix-sw | 80.41 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 80.33 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 80.32 |
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-75 Score=588.94 Aligned_cols=359 Identities=24% Similarity=0.397 Sum_probs=336.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHHHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~i~~~l~g~~~~~ 143 (438)
|||++++++.+++|+++||.++.++.+.++.++|+|+|++|++|||||.+.|.+++++.+ ....++.+.|.|.|+++.+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l~G~d~~~ 80 (368)
T 3q45_A 1 MIITQVELYKSPVKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTAFIVGQYLAKGLIGTSCLD 80 (368)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTCCEEEEEECCCHHHHSCCHHHHHHHHHHHHHHHTTSBTTC
T ss_pred CEEEEEEEEEEEeecCCCEEccCceEeeeeEEEEEEEECCCCEEEeeccCCCCcCCCCHHHHHHHHHHHHHHhcCCChhh
Confidence 799999999999999999999999999999999999999999999999987665554322 3344567899999999999
Q ss_pred HHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCce-eeeeeeCCCCHHHHHHHHHHHhhcCCcE
Q 013681 144 LNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSL-STAITIPAVSPAEASELASKYCKLGFST 222 (438)
Q Consensus 144 ~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~i-p~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (438)
++.+|+.|++.+.++ +++++||||||||++||..|+|||+||||.++++ |+|+++++.+++++.+++++++++||++
T Consensus 81 ~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~e~~~~~a~~~~~~G~~~ 158 (368)
T 3q45_A 81 IVSNSLLMDAIIYGN--SCIKSAFNIALYDLAAQHAGLPLYAFLGGKKDKIIQTDYTVSIDEPHKMAADAVQIKKNGFEI 158 (368)
T ss_dssp HHHHHHHHHHHCSCC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCCSCEEBCEEECSCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeeeeeEEEecCCCHHHHHHHHHHHHHcCCCe
Confidence 999999999876654 6899999999999999999999999999998889 9999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhcc
Q 013681 223 LKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301 (438)
Q Consensus 223 iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~ 301 (438)
||+|+|.++++|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 159 ~K~KvG~~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~~---- 232 (368)
T 3q45_A 159 IKVKVGGSKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNI--QHCEEPVSRNLYTALPKIRQ---- 232 (368)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCC--SCEECCBCGGGGGGHHHHHH----
T ss_pred EEEEecCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCC--CEEECCCChhHHHHHHHHHh----
Confidence 999999999999999999999 57999999999999999999999999999997 49999999999999999986
Q ss_pred ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcC
Q 013681 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380 (438)
Q Consensus 302 ~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~ 380 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+||++|++|++++++
T Consensus 233 ~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa~p 312 (368)
T 3q45_A 233 ACRIPIMADESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGFLESRLGFTAAAHVALVSK 312 (368)
T ss_dssp TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCSSCCHHHHHHHHHHHTTCT
T ss_pred hCCCCEEEcCCcCCHHHHHHHHHcCCCCeEEechhhcCCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred CcceeecCCCcccccCCCCCceeeeCc-EEecCCCCCccceeChhhhhhccc
Q 013681 381 CIKYVNLNTPFLLSEDPFVGGCEVSGA-IYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 381 ~~~~~e~~~pl~~~~~~~~~~~~~~~G-~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
|..++|+++|+++.+|++.+++.++|| ++.+|++||||+++|++++++|+.
T Consensus 313 ~~~~~el~~~~~~~~d~~~~~~~~~~gG~i~~p~~PGlGv~~d~~~l~~~~~ 364 (368)
T 3q45_A 313 TICYYDFDTPLMFEADPVRGGIVYQQRGIIEVPETAGLGAGYQKDYLSGLEK 364 (368)
T ss_dssp TEEEECCCGGGGBSSCCEEESCEECGGGEEECCCSSBSCEEECTTTGGGSEE
T ss_pred CCceeccccHHhhhhccccCCceecCCeEEEcCCCCccceeeCHHHHHhhhh
Confidence 999999999988888888888888888 999999999999999999999874
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-75 Score=595.68 Aligned_cols=363 Identities=34% Similarity=0.552 Sum_probs=331.8
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHHHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~i~~~l~g~~~~ 142 (438)
.|||++|+++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.|.+++++.+ ....++.+.|.|.|+++.
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d~~ 83 (389)
T 3s5s_A 4 PTLIRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGSRAAAVSLREAVVGSDAR 83 (389)
T ss_dssp TTBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTTSBGG
T ss_pred CCEEEEEEEEEEEEecCCceeccCceEEeeeEEEEEEEECCCCEEEEeccCCCCcCccCHHHHHHHHHHHHHHhcCCCcc
Confidence 4899999999999999999999999999999999999999999999999988766554333 334456789999999999
Q ss_pred CHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcE
Q 013681 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (438)
+++.+|+.|++.+.++. .++++|||+||||++||..|+|||+||||..+++|+|+++++.+++++.+++++++++||++
T Consensus 84 ~~~~~~~~l~~~~~~~~-~~A~said~ALwDl~gk~~g~Pl~~LLGg~~~~v~~~~t~~~~~~e~~~~~a~~~~~~G~~~ 162 (389)
T 3s5s_A 84 AWRAVARALREASGGGA-GAARCAIETAILDALTKRAGMPLWAFFGGSGTALTTDITITTGSPERAEEAARRAAAMGFRA 162 (389)
T ss_dssp GHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTTCBHHHHTTCSCSEEECCEEECSSCSHHHHHHHHHHHHHTCCE
T ss_pred CHHHHHHHHHHhhccCh-HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEeeecCCCHHHHHHHHHHHHHcCCCe
Confidence 99999999987655442 38999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEecCCC-chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHh--hhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 223 LKLNVGRN-ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL--NDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 223 iKlKvG~d-~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L--~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
||+|+|.+ +++|+++|++||+..|++.||||||++|++++|++++++| +++++ .|||||++++|++++++|++
T Consensus 163 iKlKvg~~~~~~d~~~v~avR~~~~~~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~~~l~~-- 238 (389)
T 3s5s_A 163 LKVKVGGRLAASDPARIEAIHAAAPGASLILDGNGGLTAGEALALVAHARRLGADV--ALLEQPVPRDDWDGMKEVTR-- 238 (389)
T ss_dssp EEEECCGGGTTTHHHHHHHHHHHCTTCEEEEECTTCSCHHHHHHHHHHHHHTTCEE--EEEECCSCTTCHHHHHHHHH--
T ss_pred EEEEecCCChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCe--EEEECCCCcccHHHHHHHHh--
Confidence 99999975 8999999999999878999999999999999999999999 88876 59999999999999999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~a 378 (438)
++++|||+||++.+..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++||++||+||++|++|++++
T Consensus 239 --~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v~~k~~~-GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hlaaa 315 (389)
T 3s5s_A 239 --RAGVDVAADESAASAEDVLRVAAERAATVVNIKLMK-GGIAEALDIAAVARAAGLGLMIGGMVESVLAMTASACFAAG 315 (389)
T ss_dssp --HSSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHH-HHHHHHHHHHHHHHHTTCEEEECCSSCCHHHHHHHHHHHHH
T ss_pred --hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999999 9 999999999999999999999999999999999999999
Q ss_pred cCCcceeecCCCcccccCCCCCceeeeCcEEecCC-CCCccceeChhhhhhcccccc
Q 013681 379 LGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN-ARGQGGFLKWTIVSCTQVDCC 434 (438)
Q Consensus 379 l~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~-~pGlGv~ld~~~l~~~~~~~~ 434 (438)
++|..+.|++++.++.+|++.+++.++||++.+|+ +||||+++|++.+++|.+..-
T Consensus 316 ~p~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGve~d~~~~~~~~~~~~ 372 (389)
T 3s5s_A 316 LGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHGVTPQRRSPAAGAENLY 372 (389)
T ss_dssp HCCEEEECCCGGGGBSCCCEECSCEEETTEEECTTCCSBTCCEEC------CCEEEE
T ss_pred CCCCCeeeccchhhhhhccccCCceeECCEEECCCCCCcCCcccCHHHHhhccchhh
Confidence 99999999999988888998888999999999999 999999999999999996654
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-74 Score=587.82 Aligned_cols=364 Identities=24% Similarity=0.345 Sum_probs=335.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHHHH-HHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKAL-VKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~~~-~~~~~-i~~~l~g~~ 140 (438)
|||++|+++.+++|++.||.++.++++.++.++|+|+|++|++|||||.+. |.|++++.+.. ..+++ +.|.|+|++
T Consensus 6 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~d 85 (383)
T 3i4k_A 6 LTIQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVETMKALVDGYLAPVLIGRA 85 (383)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCSSSTTTTSCCHHHHHHHHHHTTHHHHTTSB
T ss_pred CEEEEEEEEEEeccccCCeEecceEEEeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHhhhhHHHcCCC
Confidence 999999999999999999999999999999999999999999999999987 55666544333 33444 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhc-
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL- 218 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~- 218 (438)
+.+++.+|+.|++.+.++ +++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+++++++++
T Consensus 86 ~~~~~~~~~~l~~~~~~~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~~~ 163 (383)
T 3i4k_A 86 VSELAGIMADLERVVARA--RYAKAAVDVAMHDAWARSLNVPVRDLLGGTVRDKVDVTWALGVLPLDVAVAEIEERIEEF 163 (383)
T ss_dssp GGGHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHTTSBGGGGTTCCSCSEEEBCEEECSCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCeEEEeEEeeCCCHHHHHHHHHHHHHhc
Confidence 999999999999877654 678999999999999999999999999996 7899999999999999999999998887
Q ss_pred CCcEEEEecCC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHH
Q 013681 219 GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (438)
Q Consensus 219 Gf~~iKlKvG~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~ 296 (438)
||++||+|+|. ++++|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|+
T Consensus 164 G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~ 241 (383)
T 3i4k_A 164 GNRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGV--ELFEQPTPADDLETLREIT 241 (383)
T ss_dssp CCSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTC--CEEESCSCTTCHHHHHHHH
T ss_pred CCcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCChhhHHHHHHHH
Confidence 99999999997 899999999999995 7899999999999999999999999999997 4999999999999999998
Q ss_pred HhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHH
Q 013681 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (438)
Q Consensus 297 ~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (438)
+ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|+
T Consensus 242 ~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hl 317 (383)
T 3i4k_A 242 R----RTNVSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGATSLEGPIGTAASLQF 317 (383)
T ss_dssp H----HHCCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEEEECCSCCCHHHHHHHHHH
T ss_pred h----hCCCCEEecCccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEeCCCCccHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HhhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccccccC
Q 013681 376 AAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCCHG 436 (438)
Q Consensus 376 a~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~~~ 436 (438)
+++++|..+ .|+++|+++.+|++.+++.++||++.+|++||||+++|++++++|++..+||
T Consensus 318 aaa~p~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~~~~ 379 (383)
T 3i4k_A 318 AASTKAISYGTELFGPQLLKDTYIVQEFEYKDGQVAIPQGPGLGVDVDMDKVNFYTRKEGHH 379 (383)
T ss_dssp HHHCTTEEEEECCCHHHHBSSCSSSSCCCEETTEEECCCSSBTSCCCCHHHHHHHBC-----
T ss_pred HHcCCCCCccccccchhhhhhhccCCCceeeCCEEECCCCCCcceeeCHHHHHHhhhccccc
Confidence 999999998 8999988788899988999999999999999999999999999999999965
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-75 Score=595.07 Aligned_cols=358 Identities=32% Similarity=0.510 Sum_probs=314.4
Q ss_pred CCcceeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHHHhhHhcC
Q 013681 60 TETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQ 138 (438)
Q Consensus 60 ~~~~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~i~~~l~g 138 (438)
+++-.|||++|+++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.|.+++++.+ ....++.++|.|+|
T Consensus 22 ~m~~~mkI~~i~~~~~~~Pl~~p~~~a~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~p~l~G 101 (393)
T 3u9i_A 22 SMTAPTTIRALTVAPLDIPLHEPFGIASGAQEVARNLLVAVELTDGTRGYGEAAPFPAFNGETQDMAHAAILAARSLVEG 101 (393)
T ss_dssp --CCTTBEEEEEEEEEEEEBCC----------EEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHTT
T ss_pred hcccCcEEEEEEEEEEEEecCCceEccCceEEeeeEEEEEEEECCCCEEEEEeeCCCCcCcCCHHHHHHHHHHHHHHhcC
Confidence 34445999999999999999999999999999999999999999999999999988766554333 33445678999999
Q ss_pred CCCCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhc
Q 013681 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKL 218 (438)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (438)
+++.+++.+|+.|++.+.+ .+++++|||+||||++||..|+|||+||||..+++|+|++++..+++++.+++++++++
T Consensus 102 ~d~~~~~~~~~~l~~~~~~--~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~~~t~~~~~~e~~~~~a~~~~~~ 179 (393)
T 3u9i_A 102 ADVREWRRIALALPALPGM--TGSARCAIETAILDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVAR 179 (393)
T ss_dssp SBGGGHHHHHHHGGGSTTC--CHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEECCEEEC---CHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEEEecCCCHHHHHHHHHHHHHc
Confidence 9999999999998765443 36899999999999999999999999999998999999999999999999999999999
Q ss_pred CCcEEEEecCCC---------chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHh--hhCCCCCceEecCCCCC
Q 013681 219 GFSTLKLNVGRN---------ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL--NDMGVIPVLFEQPVHRD 287 (438)
Q Consensus 219 Gf~~iKlKvG~d---------~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L--~~~~l~~~~iEqPl~~~ 287 (438)
||++||+|+|.+ +++|++++++||+..|++.|+||||++|++++|++++++| +++++ .|||||++++
T Consensus 180 Gf~~iKlKvg~~~~~~~~~~~~~~di~~v~avR~a~~d~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~ 257 (393)
T 3u9i_A 180 GVTTIKIKIGAGDPDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVP--ALFEQPVAKD 257 (393)
T ss_dssp TCCEEEEECC-------CHHHHHHHHHHHHHHHHHSTTSEEEEECCSCCCHHHHHHHHHTTTTTTCCC--SEEECCSCTT
T ss_pred CCCeEEEEeCCCcccccccccHHHHHHHHHHHHHHCCCCeEEEEccCCCCHHHHHHHHHHHhhCCCCe--EEEECCCCCC
Confidence 999999999975 8899999999999878999999999999999999999999 88887 5999999999
Q ss_pred ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
|+++|++|++ ++++|||+||++.+..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++||++||+
T Consensus 258 d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~i~~k~~~-GGit~~~~ia~~A~~~gi~~~~~~~~es~ 332 (393)
T 3u9i_A 258 DEEGLRRLTA----TRRVPVAADESVASATDAARLARNAAVDVLNIKLMK-CGIVEALDIAAIARTAGLHLMIGGMVESL 332 (393)
T ss_dssp CTTHHHHHHH----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECCSSCCH
T ss_pred cHHHHHHHHh----hCCCcEEeCCcCCCHHHHHHHHHcCCCCEEEecccc-cCHHHHHHHHHHHHHcCCeEEecCCcccH
Confidence 9999999986 689999999999999999999999999999999999 9 999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCC-CCCccceeChhhh
Q 013681 367 LATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN-ARGQGGFLKWTIV 426 (438)
Q Consensus 367 ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~-~pGlGv~ld~~~l 426 (438)
||++|++|++++++|..+.|+++|.++.++++.+++.++||++.+|+ +||||+++|+++|
T Consensus 333 ig~aa~~hlaaa~p~~~~~el~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGve~d~~~l 393 (393)
T 3u9i_A 333 LAMTVSACFAAGQGGFRFVDLDTPLFLAENPFDGGMTYHGGTIDLTLIEAGHGVTPRSPAL 393 (393)
T ss_dssp HHHHHHHHHHHHHCCEEEECCCGGGSBSCCCEEESCEEETTEEECTTCCSBTCEEEC----
T ss_pred HHHHHHHHHHhcCCCCCeecccchhhhhhcccCCCceeECCEEECCCCCCcCCcccCcccC
Confidence 99999999999999999999999988888998888999999999999 9999999999975
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-74 Score=587.46 Aligned_cols=363 Identities=22% Similarity=0.313 Sum_probs=318.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC--CCCchHHHHH-HHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTKAL-VKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~s~~~~~~~-~~~~~-i~~~l~g~~ 140 (438)
|||++|+++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.+ .|++++.+.. ..+++ +.|.|+|++
T Consensus 5 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~l~G~d 84 (381)
T 3fcp_A 5 ATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYGVESPEAISSAITHYLTPLLKGQP 84 (381)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred cEEEEEEEEEEeccccCCeEecccEEEeeeEEEEEEEECCCCEEEeccccCCCCccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999999874 3555444433 33444 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhh-c
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK-L 218 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~-~ 218 (438)
+.+++.+|+.|++.+.++ +++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.++++++++ .
T Consensus 85 ~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~~~ 162 (381)
T 3fcp_A 85 ADNLNALTARMNGAIKGN--TFAKSAIETALLDAQGKALGLPVSALLGGALQTALPVLWTLASGDTAKDIAEGEKLLAEG 162 (381)
T ss_dssp SSCHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBCEEECSSCHHHHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceeeEEEecCCChHHHHHHHHHHHHhC
Confidence 999999999999877664 679999999999999999999999999997 789999999988899999888888777 6
Q ss_pred CCcEEEEecCC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHH
Q 013681 219 GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (438)
Q Consensus 219 Gf~~iKlKvG~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~ 296 (438)
||++||+|+|. ++++|++++++||+. ++++.|+||||++|++++|++++++|+++++ .|||||++++|++++++|+
T Consensus 163 G~~~~KiKvg~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~ 240 (381)
T 3fcp_A 163 RHRAFKLKIGARELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGV--DLIEQPVSAHDNAALVRLS 240 (381)
T ss_dssp --CEEEEECCSSCHHHHHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTC--SEEECCBCTTCHHHHHHHH
T ss_pred CCCEEEEecCCCChHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCc--cceeCCCCcccHHHHHHHH
Confidence 99999999997 589999999999995 7899999999999999999999999999997 5999999999999999998
Q ss_pred HhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHH
Q 013681 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (438)
Q Consensus 297 ~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (438)
+ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|+
T Consensus 241 ~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hl 316 (381)
T 3fcp_A 241 Q----QIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGLYGGTMLEGTVGTVASLHA 316 (381)
T ss_dssp H----HSSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSTTHHHHHHHHHHHHTCEEEECCSCCCHHHHHHHHHH
T ss_pred H----hCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCceecCCCCccHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HhhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccccccC
Q 013681 376 AAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCCHG 436 (438)
Q Consensus 376 a~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~~~ 436 (438)
+++++ ..+ .|+++|+++.+|++.+++.++||++.+|++||||+++|++++++|+++.+||
T Consensus 317 aaa~~-~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~~~~ 377 (381)
T 3fcp_A 317 WSTLP-LQWGTEMFGPLLLKDDIVSVPLTFADGQVALPQTPGLGVELDEDKLHFYTRQEGHH 377 (381)
T ss_dssp HTTSC-CTTCBCCCGGGGBSCCSBSSCCCEETTEEECCCSSBTSCCBCHHHHHHHBCC----
T ss_pred HHhCC-CccccccccchhhhhhccCCCceeeCCEEECCCCCCcCcccCHHHHHHhhhhcccc
Confidence 99999 766 6888888788899888899999999999999999999999999999999965
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-74 Score=585.44 Aligned_cols=357 Identities=22% Similarity=0.334 Sum_probs=330.4
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHH-HHHHHH-HhhHhcCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA-LVKVRE-ACQFLRQSPPT 142 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~-~~~~~~-i~~~l~g~~~~ 142 (438)
|||++|+++.+++|++.||.++.++.+.++.++|+|+|++|++||||+.+.+.+++++.+. ...+++ +.|.|.|+++.
T Consensus 3 MkI~~i~~~~~~~Pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~Ge~~~~~~~~get~~~~~~~i~~~l~p~l~G~d~~ 82 (379)
T 3r0u_A 3 SKIIDIKTSIIKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGMQYIIREIFAPVILGSDLS 82 (379)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECCHHHHCCCHHHHHHHHHHTTHHHHTTCBGG
T ss_pred CEEEEEEEEEEEeecCCceEccCceEEEeEEEEEEEEECCCCEEEEEEECCCCccCCCHHHHHHHHHHHhHHHhcCCCcc
Confidence 8999999999999999999999999999999999999999999999999876555544333 233454 78999999999
Q ss_pred CHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcE
Q 013681 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (438)
+++.+|+.|++.... .+++++|||+||||++||..|+|||+||||.++++|+|.+++..+++++.+++++++++||++
T Consensus 83 ~~~~~~~~~~~~~~~--~~~A~said~ALwDl~gK~~g~Pv~~LLGg~r~~v~~y~t~g~~~~e~~~~~a~~~~~~Gf~~ 160 (379)
T 3r0u_A 83 DYKQTLELAFKKVMF--NSAAKMAIDLAYHDLLAKEQDISVAKLLGAKANSIVTDVSISCGNVAETIQNIQNGVEANFTA 160 (379)
T ss_dssp GHHHHHHHHHTTCSS--CHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCEEEBCEEECCCCHHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEEEEecCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999876543 368999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhh--CCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 223 LKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLND--MGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 223 iKlKvG~d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~--~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
||+|+|.++++|++++++||+. ++++.|+||+|++|++++|++++++|++ +++ .|||||++++|++++++|++
T Consensus 161 ~KlK~g~~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l--~~iEeP~~~~d~~~~~~l~~-- 236 (379)
T 3r0u_A 161 IKVKTGADFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNV--EIIEQPVKYYDIKAMAEITK-- 236 (379)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCE--EEEECCSCTTCHHHHHHHHH--
T ss_pred EeeecCCCHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCc--EEEECCCCcccHHHHHHHHh--
Confidence 9999999999999999999995 6799999999999999999999999999 665 69999999999999999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~a 378 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+++|++|++++
T Consensus 237 --~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa 314 (379)
T 3r0u_A 237 --FSNIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVGCMMESPAGILATASFALA 314 (379)
T ss_dssp --HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHHHH
T ss_pred --cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeCCCccHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCcceeecCCCcccccCCCCCceeeeCcEEecCC-CCCccceeChhhhhhcc
Q 013681 379 LGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTN-ARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 379 l~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~-~pGlGv~ld~~~l~~~~ 430 (438)
+|..+.|+++|.++.+|++.+++.++||++.+|+ +|||||++|+++|++-.
T Consensus 315 -p~~~~~eld~~~~~~~d~~~~~~~~~~G~i~~p~~~PGLGveld~~~~~~~~ 366 (379)
T 3r0u_A 315 -EDITVADLDPLDWVAKDLYSDYITFNEPNIILKDNLKGFGFNLAENLYFQSH 366 (379)
T ss_dssp -TTCCCBCCGGGGGSCGGGTTTTEEEETTEEEECTTCSBTSCCCHHHHTC---
T ss_pred -CCCCeeecCchhhhhhccccCCceEECCEEEcCCCCCccceeECHHHHhhhh
Confidence 9999999999988888999999999999999999 89999999999998754
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-74 Score=583.72 Aligned_cols=364 Identities=23% Similarity=0.329 Sum_probs=331.4
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC--CCCchHHHHH-HHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTKAL-VKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~s~~~~~~~-~~~~~-i~~~l~g~~ 140 (438)
++|++|+++.+++|++.||.++.++.+.++.++|+|+|++|++||||+.+.+ .|++++.+.. ..+++ +.|.|.|++
T Consensus 6 ~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~y~~e~~~~~~~~i~~~l~p~liG~d 85 (382)
T 3dgb_A 6 SAIESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPDSIKTNIDRFVAPLLIGQD 85 (382)
T ss_dssp TBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSTTTTSSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CeeeEEEEEEEeeccCCCeEecCeEEeeeeEEEEEEEECCCCEEEEecccCCCCccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 4599999999999999999999999999999999999999999999999874 3555444433 33444 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhh-c
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK-L 218 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~-~ 218 (438)
+.+++.+|+.|++.+.++ +++++|||+||||++||..|+|||+||||. ++++|+|++++.++++++.++++++++ +
T Consensus 86 ~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~~~ 163 (382)
T 3dgb_A 86 ASNINAAMLRLEQSIRGN--TFAKSGIESALLDAQGKRLGLPVSELLGGRVRDALPVAWTLASGDTAKDIAEAQKMLDLR 163 (382)
T ss_dssp TTCHHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBCEEECSSCHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCeeeEEEEecCCChHHHHHHHHHHHHhC
Confidence 999999999999877664 679999999999999999999999999997 789999999988899998888878777 6
Q ss_pred CCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHH
Q 013681 219 GFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (438)
Q Consensus 219 Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~ 296 (438)
||++||+|+|. ++++|++++++||+ .++++.|+||||++|++++|++++++|+++++ .|||||++++|++++++|+
T Consensus 164 G~~~~KiKvg~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~ 241 (382)
T 3dgb_A 164 RHRIFKLKIGAGEVDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGI--DLIEQPISRNNRAGMVRLN 241 (382)
T ss_dssp SCSEEEEECCSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTC--CCEECCBCTTCHHHHHHHH
T ss_pred CCCEEEEeeCCCCHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCc--CeeeCCCCccCHHHHHHHH
Confidence 99999999997 58999999999999 57899999999999999999999999999997 5999999999999999998
Q ss_pred HhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHH
Q 013681 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (438)
Q Consensus 297 ~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (438)
+ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|+
T Consensus 242 ~----~~~ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hl 317 (382)
T 3dgb_A 242 A----SSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYGGTMLEGGIGTLASAHA 317 (382)
T ss_dssp H----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSCCCHHHHHHHHHH
T ss_pred H----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEeecCCCccHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HhhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccccccC
Q 013681 376 AAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCCHG 436 (438)
Q Consensus 376 a~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~~~ 436 (438)
+++++|..+ .|+++|+++.+|++.+++.++||++.+|++||||+++|++++++|++.--||
T Consensus 318 aaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~~~~ 379 (382)
T 3dgb_A 318 FLTLNKLSWDTELFGPLLLTEDILAEPPVYRDFHLHVSKAPGLGLSLDEERLAFFRREGHHH 379 (382)
T ss_dssp HTTSSCCTTCBCCCHHHHBSCCSBSSCCEEETTEEECCCCSBTSCCBCHHHHHHHBC-----
T ss_pred HHcCCCCcceeeccchhhhhhcccCCCceeECCEEECCCCCCcCcccCHHHHHHhhhccccc
Confidence 999999887 6888887778889888999999999999999999999999999999987754
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-74 Score=582.52 Aligned_cols=362 Identities=19% Similarity=0.291 Sum_probs=322.6
Q ss_pred cceeeEEEEEEEEEEeeccCCcccCCeeEeeee-EEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHH-HhhHhcC
Q 013681 62 TFWVDVQRAEGRELNVALSAPLSLGLSSVENVE-NVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVRE-ACQFLRQ 138 (438)
Q Consensus 62 ~~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~-~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~-i~~~l~g 138 (438)
++.|||++|+++.+++|++.||.++.++.+.++ .++|+|+|++|++|||||.+.+.++ ++.+ ....+++ +.|.|+|
T Consensus 3 ~~~~kI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~-e~~~~~~~~i~~~l~p~liG 81 (377)
T 3my9_A 3 SWDSVVERIRIFLVESPIKMARLQGVGNVKGSVKRVLLEVTSADGIVGWGEAAPWEVFT-GTPEAAFSALDIYLRPLILG 81 (377)
T ss_dssp CCCCBEEEEEEEEEEECEEC----------CCEEEEEEEEEETTSCEEEEEECCC------CHHHHHHHHHTTTHHHHTT
T ss_pred cccCEEEEEEEEEEeccccCCeeccceEEEeeeeEEEEEEEECCCCEEEEecccCCCcC-CCHHHHHHHHHHHHHHHhCC
Confidence 567999999999999999999999999999988 9999999999999999999887665 3333 2334555 7899999
Q ss_pred CCCCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhh
Q 013681 139 SPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK 217 (438)
Q Consensus 139 ~~~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~ 217 (438)
+++.+++.+|+.|++.+.++ +++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.++++++++
T Consensus 82 ~d~~~~~~~~~~l~~~~~~~--~~A~said~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~ 159 (377)
T 3my9_A 82 APIKRVRELMARMDKMLVGH--GEAKAAVEMALLDILGKATGLSVADLLGGRVRDRIPLSFSIADPDFDADLERMRAMVP 159 (377)
T ss_dssp CBTTCHHHHHHHHHHHSCSC--HHHHHHHHHHHHHHHHHHHTCBTTGGGTCCSCSEEEBCEEECCSSHHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 99999999999999877654 689999999999999999999999999996 789999999988899999999999999
Q ss_pred cCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHH
Q 013681 218 LGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295 (438)
Q Consensus 218 ~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L 295 (438)
+||++||+|+|. ++++|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|
T Consensus 160 ~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l 237 (377)
T 3my9_A 160 AGHTVFKMKTGVKPHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRP--TFIEQPVPRRHLDAMAGF 237 (377)
T ss_dssp TTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCC--SCEECCSCTTCHHHHHHH
T ss_pred cCCCEEEEccCCCcHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCC--CEEECCCCccCHHHHHHH
Confidence 999999999997 68999999999999 57999999999999999999999999999997 499999999999999999
Q ss_pred HHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHH
Q 013681 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALH 374 (438)
Q Consensus 296 ~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~h 374 (438)
++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|
T Consensus 238 ~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~h 313 (377)
T 3my9_A 238 AA----ALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGGTLWEGGIALAAGTQ 313 (377)
T ss_dssp HH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEECCHHHHTSHHHHHHHHHHHHHHTCCEECCEECCSHHHHHHHHH
T ss_pred HH----hCCCCEEECCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEecCCCCCcHHHHHHHHH
Confidence 86 68999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHhhcCCcce-eecCCC-cccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 375 LAAGLGCIKY-VNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 375 la~al~~~~~-~e~~~p-l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
+++++++..+ .|+++| .++.+|++.+++.++||++.+|++||||+++|++++++|+++
T Consensus 314 laaa~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~ 373 (377)
T 3my9_A 314 LIAATPGISLGCEFYMPHHVLTEDVLEERIANSAGHVIVPDGPGLGISISEASLRGNAKI 373 (377)
T ss_dssp HHHTCTTBCSCBEESCTTSEECCCSSSSCCCEETTEEECCCSSBTSCCCCHHHHHHHSEE
T ss_pred HHHhCCCCccceeecCchhhhhhhccCCCceeECCEEECCCCCCCCcccCHHHHHHhhhh
Confidence 9999999887 788887 667788888889999999999999999999999999999875
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-73 Score=575.79 Aligned_cols=351 Identities=32% Similarity=0.549 Sum_probs=321.3
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHHHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~i~~~l~g~~~~ 142 (438)
.|||++++++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.+.+++++.+ ....++.+.|.|.|+++.
T Consensus 4 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~l~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~l~~~l~G~d~~ 83 (365)
T 3ik4_A 4 PTTIQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQTGTSAAIERLQSHLLGADVR 83 (365)
T ss_dssp TTBEEEEEEEEEEEEBSCC--------CEEEEEEEEEEETTSCEEEEEECCCCTTTCCCHHHHHHHHHHHGGGTTTCBGG
T ss_pred CCEEEEEEEEEEEEecCCCeEccCeEEEeeeEEEEEEEECCCCEEEEecccCCCcCcCCHHHHHHHHHHHHHHHcCCCcc
Confidence 3899999999999999999999999999999999999999999999999998887775433 334456789999999999
Q ss_pred CHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcE
Q 013681 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (438)
+++.+|+.|++.+.+. +++++|||+||||++||..|+|||+||||..+++|+|+++++.+++++.+++++++++||++
T Consensus 84 ~~~~~~~~l~~~~~~~--~~a~said~ALwDl~gk~~g~Pl~~LLGg~~~~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~ 161 (365)
T 3ik4_A 84 GWRKLAAMLDHAEHEA--AAARCGLEMAMLDALTRHYHMPLHVFFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKS 161 (365)
T ss_dssp GHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEEBCEEECCSCHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCCCE
Confidence 9999999998876543 68999999999999999999999999999989999999999999999999999999999999
Q ss_pred EEEecCCC-chHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHh--hhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 223 LKLNVGRN-ITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL--NDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 223 iKlKvG~d-~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L--~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
||+|+|.+ +++|++++++||+..|++.|+||||++|++++|++++++| +++++ .|||||++++|++++++|++
T Consensus 162 iK~Kvg~~~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~i--~~iEeP~~~~d~~~~~~l~~-- 237 (365)
T 3ik4_A 162 IKVKTAGVDVAYDLARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPM--VLFEQPLPREDWAGMAQVTA-- 237 (365)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHSSSCCEEEECTTCCCHHHHHHHHHHHHHTTCCE--EEEECCSCTTCHHHHHHHHH--
T ss_pred EEEEeCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCc--eEEECCCCcccHHHHHHHHh--
Confidence 99999985 9999999999999878999999999999999999999999 88886 59999999999999999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~a 378 (438)
++++||++||++.+..+++++++.+++|++|+|+++ | ++++++++++|+++|+++++|+++||+||++|++|++++
T Consensus 238 --~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~-GGit~~~~i~~~A~~~gi~~~~~~~~es~ig~aa~~hlaaa 314 (365)
T 3ik4_A 238 --QSGFAVAADESARSAHDVLRIAREGTASVINIKLMK-AGVAEGLKMIAIAQAAGLGLMIGGMVESILAMSFSANLAAG 314 (365)
T ss_dssp --HSSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHH-HCHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHHHH
T ss_pred --hCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEcCCc-cCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999 9 999999999999999999999999999999999999999
Q ss_pred cCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeCh
Q 013681 379 LGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKW 423 (438)
Q Consensus 379 l~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~ 423 (438)
++|..+.|+++|.++.+|++.+++.++||++.+|++||||+|+.-
T Consensus 315 ~p~~~~~el~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGve~~~ 359 (365)
T 3ik4_A 315 NGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHGVNLEG 359 (365)
T ss_dssp HCCEEEECCCGGGGBSCCSEEESCEEETTEEECCSCSBTCEEECC
T ss_pred CCCCCeeccccchhhhhcccCCCceeECCEEECCCCCccCCCCCc
Confidence 999999999999888899988889999999999999999999863
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-73 Score=580.11 Aligned_cols=361 Identities=20% Similarity=0.267 Sum_probs=321.4
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeE-eeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHH-HhhHhcCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVRE-ACQFLRQSPP 141 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~-~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~-i~~~l~g~~~ 141 (438)
|||++|+++.+++|++.||.++.+++ +.++.++|+|+|++|++|||||.+.+.++ ++.+ ....+++ +.|.|+|+++
T Consensus 8 mkI~~i~~~~~~~Pl~~p~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~-e~~~~~~~~i~~~l~p~l~G~d~ 86 (385)
T 3i6e_A 8 QKIIAMDLWHLALPVVSARDHGIGRVEGSCEIVVLRLVAEGGAEGFGEASPWAVFT-GTPEASYAALDRYLRPLVIGRRV 86 (385)
T ss_dssp SBEEEEEEEEEECCC--------------CEEEEEEEEETTSCEEEEEECCCTTTT-CCHHHHHHHHHHTTHHHHTTCBG
T ss_pred cEEEEEEEEEEecccCCCeeccCcEEeceeeEEEEEEEECCCCEEEEeeccCCCcC-CCHHHHHHHHHHHHHHHHCCCCc
Confidence 89999999999999999999999999 88999999999999999999999987765 3333 3334566 7899999999
Q ss_pred CCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCC
Q 013681 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (438)
.+++.+|+.|++.+.++ +++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+++++++++||
T Consensus 87 ~~~~~~~~~l~~~~~~~--~~A~said~ALwDl~gk~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~a~~~~~~G~ 164 (385)
T 3i6e_A 87 GDRVAIMDEAARAVAHC--TEAKAALDSALLDLAGRISNLPVWALLGGKCRDTIPLSCSIANPDFDADIALMERLRADGV 164 (385)
T ss_dssp GGHHHHHHHHHHHSSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBEEEECCSSHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCcccCCceEEEEEcCCCCHHHHHHHHHHHHHcCC
Confidence 99999999998877654 689999999999999999999999999997 789999999988899999999999999999
Q ss_pred cEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 221 STLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 221 ~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
++||+|+|. ++++|++++++||+..+++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 165 ~~~K~Kvg~~~~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~-- 240 (385)
T 3i6e_A 165 GLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQP--DFIEQPVRAHHFELMARLRG-- 240 (385)
T ss_dssp CEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCC--SCEECCSCTTCHHHHHHHHT--
T ss_pred CEEEEecCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHH--
Confidence 999999997 6899999999999955999999999999999999999999999997 59999999999999999985
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~a 378 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|++++
T Consensus 241 --~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa 318 (385)
T 3i6e_A 241 --LTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAA 318 (385)
T ss_dssp --TCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHHHT
T ss_pred --hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCEEEeCCCCccHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCcce-eecCCC-cccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccccc
Q 013681 379 LGCIKY-VNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCC 434 (438)
Q Consensus 379 l~~~~~-~e~~~p-l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~ 434 (438)
+++..+ .|++++ .++.+|++.+++.++||++.+|++||||+++|++++++|+++.-
T Consensus 319 ~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~~ 376 (385)
T 3i6e_A 319 TPEITLGCEFYQASYFLNEDILETPFRVEAGQVIVPDGPGLGARADPEKLEHYAVRRS 376 (385)
T ss_dssp CTTEEEEECCCHHHHTCSSCSBSSCCCEETTEEECCCSSBTSSCBCHHHHHHHEEEC-
T ss_pred CCCCccchhhcCchhhhhhhcccCCceeECCEEECCCCCCCCceECHHHHHhhhcccc
Confidence 999887 788876 66778888888999999999999999999999999999997653
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-73 Score=574.34 Aligned_cols=359 Identities=19% Similarity=0.309 Sum_probs=320.4
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHH-HHhhHhcCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVR-EACQFLRQSPPT 142 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~-~i~~~l~g~~~~ 142 (438)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|++|||||.+.|++++++.+ ....++ .+.|.|.|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d~~ 80 (367)
T 3dg3_A 1 MKIVAIGAIPFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGETQTGIVAVIEQYFAPALIGLTLT 80 (367)
T ss_dssp CBEEEEEEEEEEECBC-----------CEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTTCBTT
T ss_pred CEEEEEEEEEEEeeccCCeeccCeEEeeeeEEEEEEEECCCCEEEEeccCCCCccCCCHHHHHHHHHHHHHHHHcCCCcC
Confidence 799999999999999999999999999999999999999999999999988877665433 333455 488999999999
Q ss_pred CHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhc-CCc
Q 013681 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKL-GFS 221 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~-Gf~ 221 (438)
+++.+|+.|++. .+ .+++++|||+||||++||..|+|||+||||.++++|+|+++++.+++++.+++++++++ ||+
T Consensus 81 ~~~~~~~~l~~~-~~--~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~~G~~ 157 (367)
T 3dg3_A 81 EREVAHTRMART-VG--NPTAKAAIDMAMWDALGQSLRLSVSEMLGGYTDRMRVSHMLGFDDPVKMVAEAERIRETYGIN 157 (367)
T ss_dssp CHHHHHHHHTTS-CS--CHHHHHHHHHHHHHHHHHHHTCBHHHHHTCCCSEEEEEEEEESSCHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHhc-cC--chHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEEEEecCCCHHHHHHHHHHHHHhcCcc
Confidence 999999998754 23 36899999999999999999999999999988999999999999999999999999999 999
Q ss_pred EEEEecCCCch-HHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 222 TLKLNVGRNIT-ADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 222 ~iKlKvG~d~~-~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
+||+|+|.+.. +|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 158 ~~K~K~g~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 233 (367)
T 3dg3_A 158 TFKVKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDL--LFAEELCPADDVLSRRRLVG-- 233 (367)
T ss_dssp EEEEECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCC--SCEESCSCTTSHHHHHHHHH--
T ss_pred EEEEeeCCChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCC--CEEECCCCcccHHHHHHHHH--
Confidence 99999998777 99999999999 57999999999999999999999999999997 49999999999999999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhc
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al 379 (438)
++++||++||++.+..+++++++.+++|++|+|++++|++++++++++|+++|+++++|+++||+||++|++|+++++
T Consensus 234 --~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~Git~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaaa~ 311 (367)
T 3dg3_A 234 --QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGNQIDGQIGTACTVSFGTAF 311 (367)
T ss_dssp --HCSSCEEECTTCSSHHHHHHHHHHTSCSEEEECHHHHTTHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTC
T ss_pred --hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeehhhhhHHHHHHHHHHHHHcCCeEEECCcCCcHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-cce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 380 GC-IKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 380 ~~-~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
+| ..+ .|+++++.+.++++.+++.++||++.+|++||||+++|++++++|+++
T Consensus 312 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~ 366 (367)
T 3dg3_A 312 ERTSRHAGELSNFLDMSDDLLTVPLQISDGQLHRRPGPGLGIEIDPDKLAHYRTD 366 (367)
T ss_dssp HHHHTSCEECCGGGGBSCCSBSSCCCCBTTEEECCSSSBTSCCBCHHHHHHHBCC
T ss_pred CcccCcchhccchhhhhhcccCCCceeeCCEEECCCCCcCCceECHHHHHHhhcC
Confidence 73 233 478888888889998889999999999999999999999999999875
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-73 Score=574.20 Aligned_cols=351 Identities=25% Similarity=0.369 Sum_probs=316.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHH-HHHHH-HhhHhcCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL-VKVRE-ACQFLRQSPPT 142 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~-~~~~~-i~~~l~g~~~~ 142 (438)
|||++++++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.+.+++++.+.. ..+++ +.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~l~~~l~G~~~~ 80 (356)
T 3ro6_B 1 MKIADIQVRTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGETLEACHAALDHDRLGWLMGRDIR 80 (356)
T ss_dssp CBEEEEEEEEEEEEBC----------CEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHHHCGGGCTTTTTCBGG
T ss_pred CEEEEEEEEEEEecccCCEEecCeEEEeeeEEEEEEEECCCCEEEecccCCCCcCcCCHHHHHHHHHHHhHHHhcCCCcc
Confidence 79999999999999999999999999999999999999999999999998776555443332 23444 78999999999
Q ss_pred CHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcE
Q 013681 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (438)
+++.+|+.|++.+.++ +++++|||+||||++||..|+|||+||||.++++|+|.++++.+++++.+++++++++||++
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 158 (356)
T 3ro6_B 81 TLPRLCRELAERLPAA--PAARAALDMALHDLVAQCLGLPLVEILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRV 158 (356)
T ss_dssp GHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHTSBHHHHTCCCCSCEEBCEEECSCCHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 9999999998876554 68999999999999999999999999999988999999999999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhcc
Q 013681 223 LKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301 (438)
Q Consensus 223 iKlKvG~d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~ 301 (438)
||+|+|.++++|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 159 ~K~K~G~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~---- 232 (356)
T 3ro6_B 159 LKVKLCGDEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGI--EFIEQPFPAGRTDWLRALPK---- 232 (356)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTC--CCEECCSCTTCHHHHHTSCH----
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCC--CEEECCCCCCcHHHHHHHHh----
Confidence 9999999999999999999995 7999999999999999999999999999997 49999999999999999975
Q ss_pred ccCCeEEEcCCCCCHHHHHHHHHcC-CccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhc
Q 013681 302 TYGISVVADESCRSLNDVQKVMQEN-LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (438)
Q Consensus 302 ~~~iPIa~dEsl~~~~d~~~ll~~~-a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al 379 (438)
++++||++||++.+..+++++++.+ ++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|+++++
T Consensus 233 ~~~iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaaa~ 312 (356)
T 3ro6_B 233 AIRRRIAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWGCMDESRISIAAALHAALAC 312 (356)
T ss_dssp HHHHTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTC
T ss_pred cCCCCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHhcC
Confidence 5899999999999999999999999 9999999999997 9999999999999999999999999999999999999999
Q ss_pred CCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChh
Q 013681 380 GCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWT 424 (438)
Q Consensus 380 ~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~ 424 (438)
+|..+.|+++++++.+|++.+++.++||++.+|++||||+ +|+|
T Consensus 313 p~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv-~d~~ 356 (356)
T 3ro6_B 313 PATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLGL-VYPD 356 (356)
T ss_dssp TTEEEECCCTTTTBSCCSCEESCEEETTEEECCSSSBTCE-EC--
T ss_pred CCCCeEecccchhhhhccccCCceeECCEEECCCCCeeee-cCCC
Confidence 9999999999988888998888999999999999999999 9986
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-72 Score=568.75 Aligned_cols=357 Identities=23% Similarity=0.349 Sum_probs=324.3
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHHHHH-HHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKALV-KVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~~~~-~~~~-i~~~l~g~~ 140 (438)
|||++|+++.+++||++||.++.++.+.++.++|+|+| +|++|||||.+. |.++++..+... .+++ +.|.|+|++
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~v~V~i~t-dG~~G~GE~~~~~~p~~~~e~~~~~~~~i~~~l~p~liG~d 79 (370)
T 2chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (370)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEEcccCCceEccceEEEEEEEEEEEEEE-CCcEEEEEecCCCCCccCcccHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999998 599999999876 456665444333 2333 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCH-HHHHHHHHHHhhc
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSP-AEASELASKYCKL 218 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~-~~~~~~~~~~~~~ 218 (438)
+.+++.+|+.|.+.+.++ +++++|||+||||++||..|+|||+||||. ++.+++|.++...+. +++.+.++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~A~said~AlwDl~gK~~g~Pl~~lLGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (370)
T 2chr_A 80 AFNVSGALQTMARAVTGN--ASAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERR 157 (370)
T ss_dssp TTCHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHTTCCHHHHTTCCSCSEEEBEEEECSSCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhhccccc--HHHHHHHHHHHHHHHHHhcCCccccccCCccccccceeeeeccCchhhhHHHHHHHHhhc
Confidence 999999999998776654 578999999999999999999999999998 577888888776554 4556777888889
Q ss_pred CCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHH
Q 013681 219 GFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (438)
Q Consensus 219 Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~ 296 (438)
||+++|+|+|. ++++|+++++++|+ +++++.||||||++|++++|++++++|+++++ .|||||++++|+++|++|+
T Consensus 158 g~~~~K~Kvg~~~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~ 235 (370)
T 2chr_A 158 RHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGV--ELIEQPVGRENTQALRRLS 235 (370)
T ss_dssp SCCEEEEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTC--CEEECCSCSSCHHHHHHHH
T ss_pred ccceeecccccCChHHHHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHhcCC--ceecCCCChhhhhhhhHHh
Confidence 99999999996 78999999999999 58999999999999999999999999999997 4999999999999999998
Q ss_pred HhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHH
Q 013681 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (438)
Q Consensus 297 ~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (438)
+ ++++|||+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+|+++|++|+
T Consensus 236 ~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~~~~~~~~~~~i~~aa~~hl 311 (370)
T 2chr_A 236 D----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQL 311 (370)
T ss_dssp H----HCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHHHHHHHHHTCEECCCCCSCCHHHHHHHHHH
T ss_pred h----hccCCccCCccCCCHHHHHHHHHcCCCcEEEeCCcccCCHHHHHHHHHHHHHcCCeEEeCCCcccHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred HhhcCCccee-ecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcc
Q 013681 376 AAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 376 a~al~~~~~~-e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
+++++|..+. ++++|+.+.++++.+++.++||++.+|++||||+++|+|+|++|+
T Consensus 312 aa~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~y~ 367 (370)
T 2chr_A 312 YSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKVRQYA 367 (370)
T ss_dssp HTTSSCCTTCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTCCBCHHHHHHHC
T ss_pred HHhCCCCCcccccCchhhhhhhccCCCceEECCEEECCCCCCCCceECHHHHHHhh
Confidence 9999998764 677777778888888899999999999999999999999999996
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-71 Score=563.33 Aligned_cols=356 Identities=17% Similarity=0.267 Sum_probs=324.6
Q ss_pred eeeEEEEEEEEEEeeccCC-cccCC-eeEeeeeEEEEEEEEcCCcEEEEEEecC-CCCCchHHH-HHHHHHHHhhHhcCC
Q 013681 64 WVDVQRAEGRELNVALSAP-LSLGL-SSVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQTK-ALVKVREACQFLRQS 139 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p-~~~s~-~~~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~s~~~~~-~~~~~~~i~~~l~g~ 139 (438)
.|||++|+++.+++|++.| |.++. ++.+.++.++|+|+|++|++|||||.+. +.|+++..+ ....++.+.|.|+|+
T Consensus 2 ~MkI~~i~~~~~~~pl~~p~~~~s~g~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~e~~~~~~~~l~~l~~~l~G~ 81 (386)
T 3fv9_G 2 SLKITRIDIHRTDLPVRGGVYRLSGGREYHSYDATIVSIETDTGLTGWGESTPFGSTYIAAHAGGTRAALELLAPAILGM 81 (386)
T ss_dssp -CCEEEEEEEEEEEEBSSSCEEETTTEEESEEEEEEEEEEETTSCEEEEEECCSTTSSSSCCHHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEEEEEEEEeecCCCceEecCceEEeeeeEEEEEEEECCCCEEEEecccCCCccCcccHHHHHHHHHHHHHHhCCC
Confidence 3899999999999999999 99994 4889999999999999999999999987 556654332 334456789999999
Q ss_pred CCCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhc
Q 013681 140 PPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL 218 (438)
Q Consensus 140 ~~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (438)
++.+++.+|+.|++.+.++ +++++|||+||||++||..|+|||+||||. ++++|+|.+++..+++++.+++++++++
T Consensus 82 d~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pv~~LLGg~~~~~v~~y~s~~~~~~e~~~~~a~~~~~~ 159 (386)
T 3fv9_G 82 DPRQHDRIWDRMRDTLKGH--RDARAALDIACWDIAAQAAGLPLCDMTGGRVAGPVPVISSIGGDTPEAMRAKVARHRAQ 159 (386)
T ss_dssp CTTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSCBCEEEEECSCCHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeeeEecCCCCHHHHHHHHHHHHHC
Confidence 9999999999999877664 689999999999999999999999999997 6899999999999999999999999999
Q ss_pred CCcEEEEecC-----CCchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhh
Q 013681 219 GFSTLKLNVG-----RNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 219 Gf~~iKlKvG-----~d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~ 291 (438)
||++||+|+| .++++|++++++||+. ++++.|+||||++|++++|++++++| ++++ + |||||++ |+++
T Consensus 160 G~~~~K~Kvg~~~~~~~~~~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~--i-~iEeP~~--~~~~ 234 (386)
T 3fv9_G 160 GFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGLD--I-VLEAPCA--SWAE 234 (386)
T ss_dssp TCCEEEEECCCCTTTTHHHHHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSCSSCC--C-EEECCCS--SHHH
T ss_pred CCCEEEEeccCCCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhhccCC--c-EEecCCC--CHHH
Confidence 9999999999 5689999999999995 79999999999999999999999999 7776 4 9999998 7999
Q ss_pred HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHH
Q 013681 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 292 ~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~ 370 (438)
+++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|+++
T Consensus 235 ~~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~a 310 (386)
T 3fv9_G 235 TKSLRA----RCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMVMSVQDTVGSQISFA 310 (386)
T ss_dssp HHHHHT----TCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSSCCHHHHH
T ss_pred HHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHH
Confidence 999985 68999999999999999999999999999999999997 9999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcc
Q 013681 371 FALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 371 a~~hla~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
|++|++++++|..+ .+++++.++.++++.+++.++||++.+|++||||+++|+++|++..
T Consensus 311 a~~hlaaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~ 371 (386)
T 3fv9_G 311 AILHLAQSTPRHLLRCALDTRAMTTAELAEIDAPLRDGGASAPSDPGLGLRVNRDALGTPV 371 (386)
T ss_dssp HHHHHHHTSCTTTEEEEECGGGTBCCCCEECCCCSBTTBBCCCCSSBTCCEECGGGGCSCS
T ss_pred HHHHHHHhCCCcccccccccccchhccccCCCceEECCEEECCCCCCCCceeCHHHHhchh
Confidence 99999999999544 4677777777788778888999999999999999999999997765
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-71 Score=563.46 Aligned_cols=354 Identities=15% Similarity=0.246 Sum_probs=305.7
Q ss_pred eeEEEEEEEEEEeec-cCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC-CCCCchHH-HHHHHHHHHhhHhcCCCC
Q 013681 65 VDVQRAEGRELNVAL-SAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQT-KALVKVREACQFLRQSPP 141 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl-~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~s~~~~-~~~~~~~~i~~~l~g~~~ 141 (438)
|||++|+++.+++|+ +.||.+|.++.+.++.++|+|+|++|++|||||.+. |.|+.+.. .....+++++|.|+|+++
T Consensus 23 MkI~~i~~~~~~~pl~~~p~~~s~g~~~~~~~~~V~i~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~G~d~ 102 (391)
T 4e8g_A 23 MKIAEIHVYAHDLPVKDGPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGARAALAEMAPGLIGANP 102 (391)
T ss_dssp CCEEEEEEEEEEC---------------CCEEEEEEEEETTSCEEEEEECCSSTTTSSCCHHHHHHHHHHHGGGGTTCCT
T ss_pred CEEEEEEEEEEeeeCCCCCcccccceeeeeeEEEEEEEECCCCEEEecCcCCCCccCCccHHHHHHHHHHHHHHHCCCCc
Confidence 999999999999999 999999999999999999999999999999999987 66665422 333446679999999999
Q ss_pred CCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCC
Q 013681 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (438)
.+++.+|+.|++.+.|+ +++++|||||||||+||..|+|||+||||. ++++|+|.+++..+++++.+++++++++||
T Consensus 103 ~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~s~~~~~~e~~~~~a~~~~~~G~ 180 (391)
T 4e8g_A 103 LQPLVLRRRMDGLLCGH--NYAKAAIDIAAYDLMGKHYGVRVADLLGGVAAERVPSYYATGIGQPDEIARIAAEKVAEGF 180 (391)
T ss_dssp TCHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSCSEEECCEEECSCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCChHHHhcCCCCCCcEEEeEEcCCCCHHHHHHHHHHHHHcCC
Confidence 99999999998766554 689999999999999999999999999997 689999999999999999999999999999
Q ss_pred cEEEEecCC-CchHHHHHHHHHHh-hC-CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHH
Q 013681 221 STLKLNVGR-NITADFDVLQAIHA-VH-PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 221 ~~iKlKvG~-d~~~di~~l~aiR~-~~-~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
++||+|+|. ++++|++++++||+ .+ |++.|+||||++|++++|++++++|++++ + |||||+ +|++++++|++
T Consensus 181 ~~~KlKvg~~~~~~d~~~v~avR~a~gg~~~~L~vDaN~~w~~~~A~~~~~~L~~~~--i-~iEeP~--~~~~~~~~l~~ 255 (391)
T 4e8g_A 181 PRLQIKIGGRPVEIDIETVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPEIP--F-VLEQPC--NTLEEIAAIRG 255 (391)
T ss_dssp SEEEEECCSSCHHHHHHHHHHHHHHHTTTTCEEEEECTTCCCHHHHHHHHHHCTTSC--E-EEESCS--SSHHHHHHHGG
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCCHHHHHHHHHHHhhcC--e-EEecCC--ccHHHHHHHHh
Confidence 999999997 89999999999998 57 99999999999999999999999999997 4 999996 48999999985
Q ss_pred hhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHH
Q 013681 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (438)
Q Consensus 298 ~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|+++|++|++
T Consensus 256 ----~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hla 331 (391)
T 4e8g_A 256 ----RVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQQMAAFRDICEARALPHSCDDAWGGDIIAAACTHIG 331 (391)
T ss_dssp ----GCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCCEEEECSSCSHHHHHHHHHHH
T ss_pred ----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEeCCcCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hhcCCcceeec-CCCcccccCCCCCc-eeeeCcEEecCCCCCccceeChhhhhhc
Q 013681 377 AGLGCIKYVNL-NTPFLLSEDPFVGG-CEVSGAIYNFTNARGQGGFLKWTIVSCT 429 (438)
Q Consensus 377 ~al~~~~~~e~-~~pl~~~~~~~~~~-~~~~~G~~~~p~~pGlGv~ld~~~l~~~ 429 (438)
++++|..+.+. +..-++..+....+ +.++||++.+|++||||+++|+++|++-
T Consensus 332 aa~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~i~vp~~PGLGve~d~~~l~~p 386 (391)
T 4e8g_A 332 ATVQPRLNEGVWVAQPYIAQPYDEENGIRIAGGHIDLPKGPGLGITPDESLFGPP 386 (391)
T ss_dssp TTSCGGGEEECCCSGGGCSSCSCTTTCCCEETTEEECCCSSBTSCCCCGGGTCSC
T ss_pred HhCCCccccccccchhhhhhhccccCCceEECCEEECCCCCcCCCccCHHHHhcc
Confidence 99999876542 22222334444344 6789999999999999999999999763
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-72 Score=567.56 Aligned_cols=358 Identities=23% Similarity=0.345 Sum_probs=328.2
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC--CCCchHHHHH-HHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTKAL-VKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~s~~~~~~~-~~~~~-i~~~l~g~~ 140 (438)
|||++|+++.+++|++.||.+|.++.+.++.++|+|+ ++|++|||||.+.+ .|++++.+.. ..+++ +.|.|+|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~d 79 (370)
T 1chr_A 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (370)
T ss_dssp CCCCCCCEECCCCCCCCCCTTCCSSCCCCCCEECCBC-SSSCBCCEECCCBTTBTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEEccCCCCeEccceEEeeeeEEEEEEE-ECCcEEEEccccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999999999999 99999999999764 3555444433 33444 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhh-c
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK-L 218 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~-~ 218 (438)
+.+++.+|+.|++.+.++ +++++||||||||++||..|+|||+||||. ++++|+|++++.++++++.++++++++ +
T Consensus 80 ~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~~~t~~~~~~~~~~~~~~~~~~~~ 157 (370)
T 1chr_A 80 AFNVSGALQTMARAVTGN--ASAKAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLDSAVEMIERR 157 (370)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEBEEEECSSSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeEEEEecCCCcHHHHHHHHHHHHHC
Confidence 999999999999877664 678999999999999999999999999996 789999999888888887666666666 8
Q ss_pred CCcEEEEecCC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHH
Q 013681 219 GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (438)
Q Consensus 219 Gf~~iKlKvG~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~ 296 (438)
||++||+|+|. ++++|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|+
T Consensus 158 G~~~~KiKvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~ 235 (370)
T 1chr_A 158 RHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGV--ELIEQPVGRENTQALRRLS 235 (370)
T ss_dssp CCCEEEEECSSSCSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTE--EEEECCSCTTCHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHH
Confidence 99999999997 789999999999995 6789999999999999999999999999987 5999999999999999998
Q ss_pred HhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHH
Q 013681 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (438)
Q Consensus 297 ~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (438)
+ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|+
T Consensus 236 ~----~~~iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hl 311 (370)
T 1chr_A 236 D----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQL 311 (370)
T ss_dssp H----HSCSEEEESSSCCSHHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEEEECCSCCTTHHHHHHHHH
T ss_pred h----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEecCCCccHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HhhcCCccee-ecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 376 AAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 376 a~al~~~~~~-e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
+++++|..+. |+++|+++.+|++.+++.++||++.+|++||||+++|++++++|+.
T Consensus 312 aaa~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~ 368 (370)
T 1chr_A 312 YSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKVRQYAR 368 (370)
T ss_dssp HTTSSCCTTCBCCCTGGGSSCCSBSSCCEEETTEEECCCCSBTSCCBCHHHHHHTCS
T ss_pred HHhCCCCccchhcccchhhhhcccCCCceeECCEEECCCCCcCCcccCHHHHHhhhc
Confidence 9999998774 8888888888999889999999999999999999999999999974
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-71 Score=560.61 Aligned_cols=355 Identities=20% Similarity=0.307 Sum_probs=322.9
Q ss_pred eeEEEEEEEEEEeeccCCcccCCe--eEeeeeEEEEEEEEcCCcEEEEEEecC-CCCCchHHH-HHHHHHHHhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLS--SVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQTK-ALVKVREACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~--~~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~s~~~~~-~~~~~~~i~~~l~g~~ 140 (438)
|||++|+++.+++|++.||.++.+ +.+.++.++|+|+|++|++|||||.+. +.|+++..+ ....++.+.|.|+|++
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~p~l~G~d 82 (378)
T 3eez_A 3 LKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYVPAHGPGIRAGIETMAPFVLGLD 82 (378)
T ss_dssp CCEEEEEEEEEEEEBSSCCC------CCCEEEEEEEEEEETTCCCEEEEECCSCSSSSSCCHHHHHHHHHHHHHHHTTSC
T ss_pred cEEEEEEEEEEeccCCCceeecCCcceeeeeeEEEEEEEECCCCEEEecccCCCCccCCCcHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999977 678899999999999999999999987 666554322 3334567899999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
+.+++.+|+.|++.+.++ +++++|||+|||||+||..|+|||+||||. ++++|+|.+++..+++++.+.+++++++|
T Consensus 83 ~~~~~~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pl~~LlGg~~r~~v~~~~~~~~~~~e~~~~~a~~~~~~G 160 (378)
T 3eez_A 83 PRRLLDVERAMDIALPGH--LYAKSPIDMACWDIAGQAAGLPIADLMGGGSRTPRPIASSVGAKSVEETRAVIDRYRQRG 160 (378)
T ss_dssp TTCHHHHHHHHHHHSSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCSCEEBBCCBCSCCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCeEEEEEEecCCCHHHHHHHHHHHHhCC
Confidence 999999999998877664 679999999999999999999999999997 68999999999999999999999999999
Q ss_pred CcEEEEecCCCchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHh
Q 013681 220 FSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 220 f~~iKlKvG~d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
|++||+|+|.++++|++++++||+. ++++.|+||+|++|++++|++++++|++++ + |||||++ |++++++|++
T Consensus 161 ~~~iKiK~G~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~--i-~iEqP~~--~~~~~~~l~~- 234 (378)
T 3eez_A 161 YVAHSVKIGGDVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLH--V-MFEQPGE--TLDDIAAIRP- 234 (378)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGT--C-CEECCSS--SHHHHHHTGG-
T ss_pred CCEEEeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCC--e-EEecCCC--CHHHHHHHHh-
Confidence 9999999999999999999999995 789999999999999999999999999997 4 9999998 8999999875
Q ss_pred hccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 299 ~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+|+++|++|+++
T Consensus 235 ---~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~~~~~~~~~es~i~~aa~~hlaa 311 (378)
T 3eez_A 235 ---LHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVMATGGSVLADAEALHLAA 311 (378)
T ss_dssp ---GCCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEECSSCSHHHHHHHHHHHH
T ss_pred ---hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred hcCCcce-eecCCCcccccCCCCC-ceeeeCcEEecCCCCCccceeChhhhhhcc
Q 013681 378 GLGCIKY-VNLNTPFLLSEDPFVG-GCEVSGAIYNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 378 al~~~~~-~e~~~pl~~~~~~~~~-~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
++++..+ .+++++.++.++++.+ ++.++||++.+|++||||+++|++++++--
T Consensus 312 a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~ 366 (378)
T 3eez_A 312 TIPDHACHAVWACQDMLTVDIAGGRGPRNIDGHLHLPETPGLGVHPDEDALGDPV 366 (378)
T ss_dssp TSCGGGBCCBCCSGGGBSCCTTTTCSSCCBTTEECCCCSSBTSCCCCTTSSCSCS
T ss_pred hCCCccceeeccccchhhhhcccCCCCeeECCEEECCCCCCCCcccCHHHHhChH
Confidence 9998543 4788887788888877 788999999999999999999999998854
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-71 Score=562.24 Aligned_cols=352 Identities=18% Similarity=0.247 Sum_probs=324.5
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC---CCCCchHHHHHHHHHHHhhHhcCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV---PLVTGDQTKALVKVREACQFLRQSPP 141 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~---~~~s~~~~~~~~~~~~i~~~l~g~~~ 141 (438)
|||++|+++.+++|++.||.+ +.++|+|+|++|++|||||.+. |.++++.. ...+.+.|.|+|+++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~--------~~~~V~v~td~G~~G~GE~~~~~~~p~~~~e~~---~i~~~l~p~liG~d~ 69 (391)
T 3gd6_A 1 MKITDLELHAVGIPRHTGFVN--------KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLH---DLKQGLLSILLGQNP 69 (391)
T ss_dssp CCEEEEEEEEEEEEBTTSCEE--------EEEEEEEEETTSCEEEEEECCCSSSSSCCCCHH---HHHHHHHHHHTTCCT
T ss_pred CEEEEEEEEEEecccCCCccc--------ceEEEEEEECCCCEEEeccccccCCCccchhHH---HHHHHHHHHhCCCCc
Confidence 799999999999999999875 7899999999999999999876 55666543 212458899999999
Q ss_pred CCHHHHHHHHHHHCC-----CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeC----CCCHHHHHHH
Q 013681 142 TTLNFALDEIARILP-----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP----AVSPAEASEL 211 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~-----g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~----~~~~~~~~~~ 211 (438)
.+++.+|+.|++.+. +...+++++||||||||++||..|+|||+||||. ++++|+|++++ ..+++++.++
T Consensus 70 ~~~~~~~~~l~~~~~~~~~~~~g~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~t~~~~~~~~~~e~~~~~ 149 (391)
T 3gd6_A 70 FDLMKINKELTDNFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIKVCYPIFRHRFSEEVESNLDV 149 (391)
T ss_dssp TCHHHHHHHHHHHSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEBCEEECCCSSTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhhcccccCcchHHHHHHHHHHHHHHhcccCCcHHHHhCCCcCCeEEeeEEecccccCCCHHHHHHH
Confidence 999999999997654 1234789999999999999999999999999995 78999999998 7889999999
Q ss_pred HHHHhhcCCcEEEEecCCCchHHHHHHHHHHhh-CCCcEEE-EeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCCh
Q 013681 212 ASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HPHCSFI-LDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289 (438)
Q Consensus 212 ~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~-~~~~~L~-vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~ 289 (438)
+++++++||++||+|+|.++++|++++++||+. ++++.|+ ||+|++|++++|++++++|+++++.+.|||||++++|+
T Consensus 150 a~~~~~~G~~~~KiKvG~~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iEqP~~~~d~ 229 (391)
T 3gd6_A 150 VRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAPRNDF 229 (391)
T ss_dssp HHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEECCSCTTCH
T ss_pred HHHHHHcCCCEEEEeeCCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceecCCCChhhH
Confidence 999999999999999999999999999999995 7999999 99999999999999999999998733599999999999
Q ss_pred hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHH
Q 013681 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLA 368 (438)
Q Consensus 290 ~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig 368 (438)
+++++|++ ++++|| ||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||
T Consensus 230 ~~~~~l~~----~~~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~ 303 (391)
T 3gd6_A 230 DGLYQLRL----KTDYPI--SEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQELSVG 303 (391)
T ss_dssp HHHHHHHH----HCSSCE--EEECCCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHH
T ss_pred HHHHHHHH----HcCCCc--CCCCCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCEEEecCCCccHHH
Confidence 99999986 689999 999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCC--CCCccceeChhhhhhccccc
Q 013681 369 TGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTN--ARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 369 ~~a~~hla~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~--~pGlGv~ld~~~l~~~~~~~ 433 (438)
++|++|+++++++..+ +|+++|.++.++++.+++.++||++.+|+ +||||+++|++++++|+++.
T Consensus 304 ~aa~~hlaaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~~PGlGv~~d~~~l~~~~~~~ 371 (391)
T 3gd6_A 304 TAAMAHLGCSLTNINHTSDPTGPELYVGDVVKNRVTYKDGYLYAPDRSVKGLGIELDESLLAKYQVPD 371 (391)
T ss_dssp HHHHHHHHTTCSSCCSCBCCCGGGGBSCCSBSSCCCEETTEEECCCTTSSBTSCCBCHHHHHHTBCSC
T ss_pred HHHHHHHHHhCCCCCccccccchhhhhhccccCCceeECCEEEeCCCCCCCCCcccCHHHHHhccccc
Confidence 9999999999999998 89999988888898888999999999999 99999999999999999763
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-71 Score=558.61 Aligned_cols=344 Identities=29% Similarity=0.443 Sum_probs=322.3
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHHHh---hHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVREAC---QFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~i~---~~l~g~~ 140 (438)
|||++++++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+.+.+++++.+ ....++.+. |.|.|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~ge~~~~~~~~i~~l~~~~p~l~G~d 80 (354)
T 3jva_A 1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFN 80 (354)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHHHTTSTTCCTTC
T ss_pred CEEEEEEEEEEEEeccCCEEecCcEEeeceEEEEEEEECCCCEEEEeecCCCCcCCCCHHHHHHHHHHHhhcCccccCCC
Confidence 799999999999999999999999999999999999999999999999998876665433 333345577 9999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGF 220 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (438)
+.+++.+|+.|+ .+ .+++++|||+||||++||..|+|||+||||.++++|+|+++++.+++++.+++++++++||
T Consensus 81 ~~~~~~~~~~l~---~~--~~~A~~aid~AlwDl~gk~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G~ 155 (354)
T 3jva_A 81 IEKIHEVMDKIS---AF--APAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGF 155 (354)
T ss_dssp HHHHHHHHHHHC---SS--CHHHHHHHHHHHHHHHHHHHTSBHHHHTTCSCSEEECCEEECSCCHHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHh---cc--cHHHHHHHHHHHHHHHHHHcCCcHHHHhhccCCeeeeeEEeCCCCHHHHHHHHHHHHHhCC
Confidence 999999999986 23 3689999999999999999999999999998899999999999999999999999999999
Q ss_pred cEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 221 STLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 221 ~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
++||+|+|.+.++|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|++
T Consensus 156 ~~~K~K~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~-- 231 (354)
T 3jva_A 156 DTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQI--ELVEQPVKRRDLEGLKYVTS-- 231 (354)
T ss_dssp SEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCE--EEEECCSCTTCHHHHHHHHH--
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCChhhHHHHHHHHH--
Confidence 99999999988999999999999 57999999999999999999999999999987 59999999999999999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAA 377 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~ 377 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++ ||+++++|++|+++
T Consensus 232 --~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~~es~i~~~a~~hlaa 309 (354)
T 3jva_A 232 --QVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAA 309 (354)
T ss_dssp --HCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCeEEecCCCcccHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999997 999999999999999999999999 99999999999999
Q ss_pred hcCCcceeecCCCcccccCCCCCceeeeCcEEecCCC-CCccc
Q 013681 378 GLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNA-RGQGG 419 (438)
Q Consensus 378 al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~-pGlGv 419 (438)
+++|..++|+++|+++.+|++.+++.++||++.+|++ ||||+
T Consensus 310 a~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~i~~p~~~PGlGv 352 (354)
T 3jva_A 310 AQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGI 352 (354)
T ss_dssp HCTTEEEECCCGGGGBSSCSSSBSSCSSCCSEEECCSSSBTCB
T ss_pred cCCCCCcccccchhhhhhccccCCceEECCEEEcCCCCCCCCC
Confidence 9999999999999888889998889999999999999 99998
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-70 Score=559.92 Aligned_cols=359 Identities=18% Similarity=0.258 Sum_probs=324.3
Q ss_pred eeEEEEEEEEEEeeccC--CcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCC
Q 013681 65 VDVQRAEGRELNVALSA--PLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~--p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~ 142 (438)
|||++|+++.+++|+++ ||.++.++.+.++.++|+|+|++|++||||+.. ++++.+.. ...++++.|.|+|+++.
T Consensus 3 MkI~~i~~~~~~~pl~~~~p~~~a~~~~~~~~~~~V~v~td~G~~G~GE~~~-~~~~~~~~--~~~i~~l~p~l~G~d~~ 79 (389)
T 3ozy_A 3 LKITEVKAHALSTPIPERMRVESGAGLKLNRQMILVEVRTDEGVTGVGSPSG-PYDLAVLK--RAIEDVIGPQLIGEDPA 79 (389)
T ss_dssp CCEEEEEEEEEEEECCGGGCCEETTEEBCEEEEEEEEEEETTSCCEEECCCS-SSCHHHHH--HHHHHTTHHHHTTSCTT
T ss_pred CEEEEEEEEEEeccCcCCCcccccccccccceEEEEEEEECCCCEEEEecCC-CCCchHHH--HHHHHHHHHHHcCCCcc
Confidence 89999999999999999 999999999999999999999999999999983 33222222 22345689999999999
Q ss_pred CHHHHHHHHHHH--CC----CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCc-eeeeeee-C-CCCHHHHHHHH
Q 013681 143 TLNFALDEIARI--LP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNS-LSTAITI-P-AVSPAEASELA 212 (438)
Q Consensus 143 ~~~~~~~~l~~~--~~----g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~-ip~~~~i-~-~~~~~~~~~~~ 212 (438)
+++.+|+.|++. +. +...+++++|||+|||||+||..|+|||+||||. +++ +|+|.++ + ..+++++.+.+
T Consensus 80 ~~~~~~~~l~~~~~~~~~g~~~~~~~A~said~AlwDl~gK~~g~Pl~~LLGg~~r~~~v~~y~~~~~~~~~~e~~~~~a 159 (389)
T 3ozy_A 80 NINYLWHKVFHGEVSRNLGHRSVGIAAMSGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAYASSIYWDLTPDQAADEL 159 (389)
T ss_dssp CHHHHHHHHHHHTHHHHHCSBSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCSSTTCEEEEEEEECSSCCHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHhHhHcCCCHHHHhCCcccCCceeeEEecCCCCCCHHHHHHHH
Confidence 999999999874 21 1235789999999999999999999999999998 788 9999988 7 78999999999
Q ss_pred HHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhh
Q 013681 213 SKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 213 ~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~ 291 (438)
++++++||++||+|+|.++++|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|+++
T Consensus 160 ~~~~~~G~~~iKiKvG~~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~ 237 (389)
T 3ozy_A 160 AGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGC--YWFEEPLSIDDIEG 237 (389)
T ss_dssp HHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTC--SEEESCSCTTCHHH
T ss_pred HHHHHCCCCEEeeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHH
Confidence 9999999999999999999999999999999 57999999999999999999999999999997 49999999999999
Q ss_pred HHHHH-HhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHH
Q 013681 292 LHDVS-NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (438)
Q Consensus 292 ~a~L~-~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (438)
+++|+ + ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+||+
T Consensus 238 ~~~l~~~----~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~~~i~~ 312 (389)
T 3ozy_A 238 HRILRAQ----GTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWNPHTF-NDIITV 312 (389)
T ss_dssp HHHHHTT----CCSSEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEECCCCT-TSHHHH
T ss_pred HHHHHhc----CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCC-CcHHHH
Confidence 99998 5 68999999999999999999999999999999999997 99999999999999999999975 899999
Q ss_pred HHHHHHHhhcCCcceeecCCC-cccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 370 GFALHLAAGLGCIKYVNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 370 ~a~~hla~al~~~~~~e~~~p-l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+|++|++++++|..++|++.. ..+.++++.+++.++||++.+|++||||+++|++++++|+++.
T Consensus 313 aa~~hlaaa~~~~~~~e~d~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~ 377 (389)
T 3ozy_A 313 AANLHLVAASPHPAMFEWDITHNDLMTRLASYDLKLENGLVQPPQGPGLGFEIDWDFVAAHAWKG 377 (389)
T ss_dssp HHHHHHHHHCCSCCCEEEECSSCGGGTTSBSCCCCCBTTEECCCCSSBTCSCBCHHHHHHTBCCS
T ss_pred HHHHHHHHhCCCCeeEEecCccchhhHhhccCCceeECCEEECCCCCcCCcccCHHHHHhccCCC
Confidence 999999999999988876542 1244567777888999999999999999999999999998543
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-70 Score=554.59 Aligned_cols=356 Identities=17% Similarity=0.251 Sum_probs=313.8
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++|+++.+++||++||.++.++++.++.++|+|+|++|++|||||.+.+ ... ....+.+.|.|+|+++.++
T Consensus 1 MKIt~i~~~~~~~pl~~p~~~a~~~~~~~~~vlV~i~td~G~~G~GE~~~~~-----~~~-~~~~~~~~~~liG~d~~~~ 74 (378)
T 4hpn_A 1 MKITAVRTHLLEHRLDTPFESASMRFDRRAHVLVEIECDDGTVGWGECLGPA-----RPN-AAVVQAYSGWLIGQDPRQT 74 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECSCH-----HHH-HHHHHHHHTTTTTSCTTCH
T ss_pred CEEEEEEEEEEeccCCCCeECCCEEEEEEEEEEEEEEECCCCEEEEEecCCc-----chH-HHHHHHHHHHHcCCChHHH
Confidence 8999999999999999999999999999999999999999999999997531 111 1224557899999999999
Q ss_pred HHHHHHHHHHCCC----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCC-----CHHHHHHHHHH
Q 013681 145 NFALDEIARILPG----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAV-----SPAEASELASK 214 (438)
Q Consensus 145 ~~~~~~l~~~~~g----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~-----~~~~~~~~~~~ 214 (438)
+.+|+.|++.+.. ....++++|||+||||++||..|+|||+||||. ++++|+|.+.+.. +++++.+++++
T Consensus 75 e~~~~~l~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGg~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 154 (378)
T 4hpn_A 75 EKIWAVLYNALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLGGRWRESVRAYATGSFKRDNVDRVSDNASEMAE 154 (378)
T ss_dssp HHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEEEEECCCBCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHhhhhccCccccccCCccccCcceeeeeccccccchhHHHHHHHHHH
Confidence 9999999886532 134678999999999999999999999999997 6889999886532 35666777888
Q ss_pred HhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHH
Q 013681 215 YCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLH 293 (438)
Q Consensus 215 ~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a 293 (438)
++++||+++|+|+|.++++|++++++||+ .+|++.||||||++|++++|++++++|+++++ .|||||++++|+++++
T Consensus 155 ~~~~Gf~~~K~k~g~~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~ 232 (378)
T 4hpn_A 155 RRAEGFHACKIKIGFGVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGI--DWFEEPVVPEQLDAYA 232 (378)
T ss_dssp HHHTTCSEEEEECCSCHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCTTCHHHHH
T ss_pred HHHhccceecccccCChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhccc--chhhcCCCccchhhhH
Confidence 88999999999999999999999999999 58999999999999999999999999999997 4999999999999999
Q ss_pred HHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHH
Q 013681 294 DVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFA 372 (438)
Q Consensus 294 ~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~ 372 (438)
+|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++|+++++|+
T Consensus 233 ~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~ia~~A~~~gi~v~~h~-~~~~i~~aa~ 307 (378)
T 4hpn_A 233 RVRA----GQPIPVAGGETWHGRYGMWQALSAGAVDILQPDLCGCGGFSEIQKIATLATLHGVRIVPHV-WGTGVQIAAA 307 (378)
T ss_dssp HHHH----HSSSCEEECTTCCHHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHHTCEECCBC-CSSHHHHHHH
T ss_pred HHHh----hCCceeeCCcCccchHhHHHHHHcCCCCEEeeCCeeCCChhHHHHHHHHHHHcCCeEEeCC-CCcHHHHHHH
Confidence 9986 68999999999999999999999999999999999997 9999999999999999998775 6999999999
Q ss_pred HHHHhhcCCcce--------eecCCC-cccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 373 LHLAAGLGCIKY--------VNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 373 ~hla~al~~~~~--------~e~~~p-l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+|+++++++..+ .+++.. ..+.++++.+++.++||++.+|++||||+++|+++|++|++++
T Consensus 308 ~h~~aa~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~y~v~d 377 (378)
T 4hpn_A 308 LQFMAAMTPDPVRVNPIEPIMEFDRTHNPFRQAVLREPLEAVNGVVTIPDGPGLGIEINRDALTEFRMPD 377 (378)
T ss_dssp HHHHHHCCCSSCCSSCCCCCEEEECSCCHHHHHTBSSCCCCBTTEEECCCSSBTSCCBCHHHHHHTBCCC
T ss_pred HHHHHHcCcccccccccccceeeccccchhhhhhccCCCeeECCEEECCCCCCCcceECHHHHhhCCCCC
Confidence 999998865432 232221 1234556778889999999999999999999999999999865
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-70 Score=558.75 Aligned_cols=356 Identities=22% Similarity=0.321 Sum_probs=319.3
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHH-HHHHHHH-HhhHhc---
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLR--- 137 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-i~~~l~--- 137 (438)
|||++++++.+++||++||.++.++++.++.++|+|+|++|++|||||.+. |.|++++.+ ....+++ +.|.|+
T Consensus 1 MkI~~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~p~~~~e~~~~~~~~l~~~l~p~l~~~~ 80 (388)
T 3qld_A 1 MSLQTCVLHRLSLPLKFPMRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTDTAWVMLVHHLVPRFARWL 80 (388)
T ss_dssp -CEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHHHHH
T ss_pred CEEEEEEEEEEecccCCceEccceEEEeeeEEEEEEEECCCCEEEEecccCCCCccccccHHHHHHHHHHHHHHHHhhhh
Confidence 799999999999999999999999999999999999999999999999864 567665433 2333444 788888
Q ss_pred ----CCCCCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCC-HHHHHHHH
Q 013681 138 ----QSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVS-PAEASELA 212 (438)
Q Consensus 138 ----g~~~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~-~~~~~~~~ 212 (438)
|+++.+++.+++.+. .+.+ .+++++||||||||++||..|+|||+||||.++++|+|.++++.+ ++++.+++
T Consensus 81 ~~~~G~~~~~~~~~~~~~~-~~~g--~~~A~said~ALwDl~gk~~g~Pl~~LLGg~r~~v~~~~~~~~~~~~e~~~~~~ 157 (388)
T 3qld_A 81 RAASQDQDVDPRTVCEALR-DVRG--NRMSVAAIEMAVWDWYAARTGQPLVGLLGGGRDRVEVSATLGMSESLDVLIQSV 157 (388)
T ss_dssp TSGGGSSCCCGGGGGGGGT-TCCS--CHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSEEEBEEEECCCSCHHHHHHHH
T ss_pred cccCCCCccCHHHHHHHHH-HccC--cHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCeEEEeEEecCCCCHHHHHHHH
Confidence 999888888777663 3444 367999999999999999999999999999989999999998876 99999999
Q ss_pred HHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhH
Q 013681 213 SKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGL 292 (438)
Q Consensus 213 ~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~ 292 (438)
++++++||++||+|+|. ++|++++++||+..|++.|+||||++|++++|++ +++|+++++ .|||||++++|++++
T Consensus 158 ~~~~~~G~~~~K~Kv~~--~~d~~~v~avR~~~~~~~l~vDaN~~~~~~~A~~-~~~l~~~~i--~~iEeP~~~~d~~~~ 232 (388)
T 3qld_A 158 DAAVEQGFRRVKLKIAP--GRDRAAIKAVRLRYPDLAIAADANGSYRPEDAPV-LRQLDAYDL--QFIEQPLPEDDWFDL 232 (388)
T ss_dssp HHHHHTTCSEEEEECBT--TBSHHHHHHHHHHCTTSEEEEECTTCCCGGGHHH-HHHGGGGCC--SCEECCSCTTCHHHH
T ss_pred HHHHHhCCCeEEEEeCc--HHHHHHHHHHHHHCCCCeEEEECCCCCChHHHHH-HHHHhhCCC--cEEECCCCcccHHHH
Confidence 99999999999999986 5899999999997799999999999999999996 899999997 599999999999999
Q ss_pred HHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHH
Q 013681 293 HDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 293 a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a 371 (438)
++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++|+|+++||+||++|
T Consensus 233 ~~l~~----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa 308 (388)
T 3qld_A 233 AKLQA----SLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGATLRALDVAGEAGMAAWVGGMYETGVGRVH 308 (388)
T ss_dssp HHHHH----HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHH
T ss_pred HHHHH----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEECchhhCCHHHHHHHHHHHHHCCCeEEecCccchHHHHHH
Confidence 99986 68999999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred HHHHHhhcCCccee-ecCCC-cccccCCCCCce-eeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 372 ALHLAAGLGCIKYV-NLNTP-FLLSEDPFVGGC-EVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 372 ~~hla~al~~~~~~-e~~~p-l~~~~~~~~~~~-~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
++|+++ +++..+. |++.+ .++.++++.+++ .++||++.+|++||||+++|++++++|+++.
T Consensus 309 ~~~laa-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~ 372 (388)
T 3qld_A 309 GLIAAA-LPLMRYATDLGPSDRYFEQDVLKEPIAFVEPGVIQVPQCAGVADWVDRDAVRRFSTAT 372 (388)
T ss_dssp HHHHHT-STTBCSCBSCCCGGGTCSSCSBSSCCCCSBTTEEECCCCSSSGGGBCHHHHHHHEEEE
T ss_pred HHHHHc-CCCCCcccccCcchhhHHhhcccCCCceeECCEEECCCCCcCCceeCHHHHHHhhcce
Confidence 999987 8887664 55543 456678887777 8999999999999999999999999999754
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-70 Score=552.84 Aligned_cols=360 Identities=19% Similarity=0.376 Sum_probs=332.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHH-HHHHHHHH-HhhHhcCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT-KALVKVRE-ACQFLRQSPPT 142 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~-~~~~~~~~-i~~~l~g~~~~ 142 (438)
|||++++++.+++|++.||.++.++.+.++.++|+|+|++|.+||||+.+.+.++++.. .....+++ ++|.|.|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~i~~~l~~~l~g~d~~ 80 (369)
T 2p8b_A 1 MKITAIHLYAIRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHTLKHTLTPALIGQNPM 80 (369)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHSCCHHHHHHHHHHTHHHHHTTCCTT
T ss_pred CEEEEEEEEEEeccccCCeEecceeEEeeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 79999999999999999999999999999999999999999999999998765544332 34445666 89999999999
Q ss_pred CHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCc
Q 013681 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFS 221 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~ 221 (438)
+++.+|+.|.+...++ +++++|||+||||++||..|+|||+||||. ++++|+|.+++..+++++.+.+++++++||+
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~i~~~~~~~~~~~a~~~~~~Gf~ 158 (369)
T 2p8b_A 81 NIEKIHDMMDNTIYGV--PTAKAAIDIACFDIMGKKLNQPVYQLIGGRYHEEFPVTHVLSIADPENMAEEAASMIQKGYQ 158 (369)
T ss_dssp CHHHHHHHHHHHCSCC--HHHHHHHHHHHHHHHHHHTTSBGGGGTTCCCCSCEECCEEECSCCHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceeeeEEecCCChHHHHHHHHHHHHcCcC
Confidence 9999999998776553 679999999999999999999999999997 7899999999989999999999999999999
Q ss_pred EEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHH-HHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 222 TLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAV-EVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 222 ~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~-~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
++|+|+|.+++.|++++++||+ .++++.|++|+|++|++++|+ +++++|+++++ .|||||++++|++++++|++
T Consensus 159 ~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 234 (369)
T 2p8b_A 159 SFKMKVGTNVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNI--DWIEQPVIADDIDAMAHIRS-- 234 (369)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCC--SCEECCBCTTCHHHHHHHHH--
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC--cEEECCCCcccHHHHHHHHH--
Confidence 9999999999999999999999 579999999999999999999 99999999997 49999999999999999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~a 378 (438)
++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||+++++|++|++++
T Consensus 235 --~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~laa~ 312 (369)
T 2p8b_A 235 --KTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVESSVASSAGFHVAFS 312 (369)
T ss_dssp --TCCSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCSSCCHHHHHHHHHHHTT
T ss_pred --hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCCcEEecCCCccHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccccc
Q 013681 379 LGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCC 434 (438)
Q Consensus 379 l~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~ 434 (438)
+++..++|+++|+++.++ .+++.++||++.+|++||||+++|++++++|++..+
T Consensus 313 ~~~~~~~el~~~~~~~~~--~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~~ 366 (369)
T 2p8b_A 313 KKIITSVELTGPLKFTKD--IGNLHYDVPFIRLNEKPGLGIEINEDTLQELTVFQD 366 (369)
T ss_dssp CTTEEEECCCHHHHBSCC--SSCCCCBTTEECCCCCSBTCCCCCHHHHHHHEEEEE
T ss_pred CCCCceeccCcchhcccc--CCCceeECCEEeCCCCCcCCCccCHHHHhhceeeeE
Confidence 999999999888766666 577888999999999999999999999999987653
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-69 Score=549.56 Aligned_cols=353 Identities=33% Similarity=0.531 Sum_probs=328.1
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHH-HHHHHHHH-HhhHhcCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT-KALVKVRE-ACQFLRQSPPT 142 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~-~~~~~~~~-i~~~l~g~~~~ 142 (438)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|.+||||+.+.+.|+++.. .....+++ ++|.|.|+++.
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~l~~~l~~~l~g~~~~ 80 (366)
T 1tkk_A 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLA 80 (366)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCCTTTTCCCHHHHHHHHHHTHHHHHTTCBGG
T ss_pred CEEEEEEEEEEEccccCCEEecCeeEEEeeEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence 79999999999999999999999999999999999999999999999998877766433 34445666 89999999999
Q ss_pred CHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcE
Q 013681 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFST 222 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~ 222 (438)
+++.+|+.|.+.+.++ +++++|||+||||++||..|+|||+||||.++++|+|.+++..+++++.+.+++++++||++
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~ 158 (366)
T 1tkk_A 81 GYEAILHDIQHLLTGN--MSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQT 158 (366)
T ss_dssp GHHHHHHHHHHSSSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHHTCCCSEEEBCEEECSCCHHHHHHHHHHHHHHTCCE
T ss_pred cHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCCCe
Confidence 9999999998765553 68999999999999999999999999999888999999998899999999999999999999
Q ss_pred EEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhh--CCCCCceEecCCCCCChhhHHHHHHh
Q 013681 223 LKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLND--MGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 223 iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~--~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
||+|+|. +++.|++++++||+ .++++.|+||+|++|++++|++++++|++ +++ .|||||++++|++++++|++
T Consensus 159 iKik~g~~~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i--~~iEqP~~~~d~~~~~~l~~- 235 (366)
T 1tkk_A 159 LKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGI--ELVEQPVHKDDLAGLKKVTD- 235 (366)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCE--EEEECCSCTTCHHHHHHHHH-
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCc--eEEECCCCcccHHHHHHHHh-
Confidence 9999997 89999999999999 57999999999999999999999999999 886 59999999999999999986
Q ss_pred hccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 299 ~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||+++++|++|+++
T Consensus 236 ---~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~laa 312 (366)
T 1tkk_A 236 ---ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAA 312 (366)
T ss_dssp ---HCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHH
T ss_pred ---hCCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehhhhcCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhh
Q 013681 378 GLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (438)
Q Consensus 378 al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~ 425 (438)
++++..++|+++|+++.+|++.+++.++||++.+|++||||+++|+++
T Consensus 313 a~~~~~~~el~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~ 360 (366)
T 1tkk_A 313 SKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAALL 360 (366)
T ss_dssp HCTTEEEECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCEEEECC-
T ss_pred cCCCCceecccchhhcccccccCCceEECCEEECCCCCccceEecccc
Confidence 999999999999987778887788899999999999999999999875
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-69 Score=547.71 Aligned_cols=358 Identities=23% Similarity=0.364 Sum_probs=330.4
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHH-HHHHHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQT-KALVKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~-~~~~~~~~-i~~~l~g~~ 140 (438)
|||++++++.+++|++.||+++.++++.++.++|+|+| +|++||||+.+. +.|+++.. .....+++ +.|.+.|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d 79 (370)
T 1nu5_A 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKD 79 (370)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEEccccCCEEecceEEEeceeEEEEEEE-CCEEEEEEeccCCCCcccCCCHHHHHHHHHHhhHHHHcCCC
Confidence 79999999999999999999999999999999999999 999999999887 55665433 23344544 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhh-c
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCK-L 218 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~-~ 218 (438)
+.+++.+|+.|.+...+. +++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+.++++++ +
T Consensus 80 ~~~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~~~~~~ 157 (370)
T 1nu5_A 80 ASNLSQARVLMDRAVTGN--LSAKAAIDIALHDLKARALNLSIADLIGGTMRTSIPIAWTLASGDTARDIDSALEMIETR 157 (370)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTCCSCSEEEBCEEECSSCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCcCCceEeeEEecCCCHHHHHHHHHHHHHhC
Confidence 999999999998876553 679999999999999999999999999997 789999999988899999999999999 9
Q ss_pred CCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHH
Q 013681 219 GFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (438)
Q Consensus 219 Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~ 296 (438)
||+++|+|+|. +++.|++++++||+ .++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|+
T Consensus 158 Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~ 235 (370)
T 1nu5_A 158 RHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGV--ELVEQPVPRANFGALRRLT 235 (370)
T ss_dssp SCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTC--CEEECCSCTTCHHHHHHHH
T ss_pred CccEEEEecCCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCc--ceEeCCCCcccHHHHHHHH
Confidence 99999999996 78999999999999 57899999999999999999999999999997 4999999999999999998
Q ss_pred HhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHH
Q 013681 297 NFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHL 375 (438)
Q Consensus 297 ~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hl 375 (438)
+ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||+||++|++|+
T Consensus 236 ~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hl 311 (370)
T 1nu5_A 236 E----QNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHV 311 (370)
T ss_dssp H----HCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHH
T ss_pred H----hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHHcCCcEEecCCcchHHHHHHHHHH
Confidence 6 58999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HhhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 376 AAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 376 a~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
++++++..+ .|+++|+++.++++.+++.++||++.+|++||||+++|++++++|++
T Consensus 312 aaa~~~~~~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~~~~~ 368 (370)
T 1nu5_A 312 YATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHDKVRHYTR 368 (370)
T ss_dssp HTTSSCCTTCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTSCCBCHHHHHHHBC
T ss_pred HhcCCCCCcccccCchhhhccccccCCceEECCEEECCCCCCCCceeCHHHHhhccc
Confidence 999999888 78888866678888888899999999999999999999999999976
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-69 Score=551.02 Aligned_cols=361 Identities=18% Similarity=0.277 Sum_probs=319.9
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCC-CCchHH-HHHHHHHH-Hhh-HhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL-VTGDQT-KALVKVRE-ACQ-FLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~-~s~~~~-~~~~~~~~-i~~-~l~g~~ 140 (438)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|.+||||+.+.+. |+++.. .....+++ ++| .|.|++
T Consensus 3 MkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~~l~~~~l~G~d 82 (397)
T 2qde_A 3 LKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGED 82 (397)
T ss_dssp CCEEEEEEEEEEECCCC-----------EEEEEEEEEETTSCEEEEECCCCCTTTTCCCHHHHHHHHHHTHHHHTTTTCC
T ss_pred CEEEEEEEEEEeeeccCCeEeccceEeeCceEEEEEEECCCCEEEEEEecccCccCCCCHHHHHHHHHHhhhhHhhcCCC
Confidence 89999999999999999999999999999999999999999999999998865 444332 34445666 889 899999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
+.+++.+|+.|...+.+ .+++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+.+++++++|
T Consensus 83 ~~~~~~l~~~l~~~~~~--~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~~vp~~~~~g~~~~e~~~~~a~~~~~~G 160 (397)
T 2qde_A 83 PTKIEKIVGRMDILTRD--NNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREG 160 (397)
T ss_dssp TTCHHHHHHHHHHHCSS--CHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSSEEBCEECCCSCHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHHHhhhhhcc--chhHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCCcceEEECCCCCHHHHHHHHHHHHHhh
Confidence 99999999999655544 4789999999999999999999999999997 78999999988789999999999999999
Q ss_pred CcEEEEecCCCchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHh
Q 013681 220 FSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 220 f~~iKlKvG~d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
|+++|+|+|.+++.|++++++||+. ++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 161 f~~vKik~g~~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~~- 237 (397)
T 2qde_A 161 FHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNL--SKIEQPLPAWDLDGMARLRG- 237 (397)
T ss_dssp CSCEEEECCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCTTCHHHHHHHHT-
T ss_pred hhheeecccCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCC--CEEECCCChhhHHHHHHHHh-
Confidence 9999999999999999999999995 8999999999999999999999999999997 49999999999999999985
Q ss_pred hccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 299 ~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++||++||+||++|++|+++
T Consensus 238 ---~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~ig~aa~~hlaa 314 (397)
T 2qde_A 238 ---KVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLA 314 (397)
T ss_dssp ---TCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCCEEECCCSCCHHHHHHHHHHHH
T ss_pred ---hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcC------C-----cceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 378 GLG------C-----IKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 378 al~------~-----~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+++ + ..++|+++|+++.++++.+++.++||++.+|++||||+++|++++++|+++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 381 (397)
T 2qde_A 315 ANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPG 381 (397)
T ss_dssp HCTTGGGSCBCCCHHHHHTTCSSGGGCCCCSBTTCCEEETTEEECCCSSBTCCCBCHHHHHHHBCTT
T ss_pred hCCcccccccccccceeeeecCCchhhhhccccCCceEECCEEECCCCCcCCcccCHHHHhhhcccc
Confidence 998 6 2245677777777888888899999999999999999999999999999754
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-70 Score=554.91 Aligned_cols=362 Identities=18% Similarity=0.268 Sum_probs=305.9
Q ss_pred ceeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHH-HHhhHhcCCCC
Q 013681 63 FWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPP 141 (438)
Q Consensus 63 ~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~i~~~l~g~~~ 141 (438)
-.|||++|+++.+++|++.||.++.++.+.++.++|+|+|++|++||||+.+.....++..... .++ .+.|.|+|+++
T Consensus 8 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~-~i~~~l~p~liG~d~ 86 (392)
T 3ddm_A 8 ASITPARVRAHVFRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRAR-LVETVLAPLLTARAF 86 (392)
T ss_dssp CCBCCCEEEEEEEEEEC-----------CEEEEEEEEEECTTSCEEEEECCCCSSTTHHHHHHH-HHHHTHHHHHTTSCB
T ss_pred CCCEEEEEEEEEEeccCCCcccCcCceeecceEEEEEEEECCCCEEEEEeccCCCCCchHHHHH-HHHHHHHHHhCCCCc
Confidence 3499999999999999999999999999999999999999999999999963211112221111 224 48899999999
Q ss_pred CCHHHHHHHHHHH------CCCC--hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHH
Q 013681 142 TTLNFALDEIARI------LPGS--EFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELAS 213 (438)
Q Consensus 142 ~~~~~~~~~l~~~------~~g~--~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~ 213 (438)
.+++.+|+.|++. ..|+ ..+++++||||||||++||..|+|||+||||..+++|+|.+. . +++++.+.++
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~~g-~-~~e~~~~~a~ 164 (392)
T 3ddm_A 87 ADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAGQPLWAWLGGSGDRIGVYASG-I-NPENPEDVVA 164 (392)
T ss_dssp SSHHHHHHHHHHTTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCCEEEEEEEE-E-CSSSHHHHHH
T ss_pred CCHHHHHHHHHhhhhhhhhhcCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCceeEEeec-C-CHHHHHHHHH
Confidence 9999999999864 1233 346799999999999999999999999999998999998873 2 3788999999
Q ss_pred HHhhcCCcEEEEecCCCchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhh
Q 013681 214 KYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSG 291 (438)
Q Consensus 214 ~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~ 291 (438)
+++++||++||+|+|.++++|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++++| +++
T Consensus 165 ~~~~~G~~~iKlK~g~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~~~~ 242 (392)
T 3ddm_A 165 RKAAEGYRAFKLKVGFDDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQL--DWLEEPLRADRPAAE 242 (392)
T ss_dssp HHHHHTCCCEEEECSSCHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTSCHHH
T ss_pred HHHHcCCCEEEEecCCCHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCC--CEEECCCCccchHHH
Confidence 9999999999999999999999999999995 8999999999999999999999999999997 59999999999 999
Q ss_pred HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHH
Q 013681 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 292 ~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~ 370 (438)
+++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ +||+||++
T Consensus 243 ~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~-~~~~i~~a 317 (392)
T 3ddm_A 243 WAELAQ----AAPMPLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLRYCPHY-LGAGIGLQ 317 (392)
T ss_dssp HHHHHH----HCSSCEEECTTCCSHHHHHHHHHHTCEEEECCCTTTTTHHHHHHHHHHHHHHTTCEECCEE-CSCHHHHH
T ss_pred HHHHHH----hcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEEecC-CchHHHHH
Confidence 999986 68999999999999999999999999999999999997 9999999999999999999887 69999999
Q ss_pred HHHHHHhhcCC---cceeecCCCcccccCCCCCce-eeeCcEEecCCCCCccceeChhhhhhcccccc
Q 013681 371 FALHLAAGLGC---IKYVNLNTPFLLSEDPFVGGC-EVSGAIYNFTNARGQGGFLKWTIVSCTQVDCC 434 (438)
Q Consensus 371 a~~hla~al~~---~~~~e~~~pl~~~~~~~~~~~-~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~ 434 (438)
|++|++++++| ..++|++.......+++.+++ .++||++.+|++||||+++|++++++|+++.-
T Consensus 318 a~~hl~aa~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~~~~~~ 385 (392)
T 3ddm_A 318 ASAHLLAAVPGLASPGLLGVDANDNPLRSLLSPALATLHEGRITLGGAPGLGVTPDLAALRAACAARE 385 (392)
T ss_dssp HHHHHHHHSCCSSSCCEEEEESSCCHHHHTTCGGGGGCBTTEEECCSCSBTSCCCCHHHHHHHC----
T ss_pred HHHHHHHhCCCCCCCceEEecCCcchHHHhccCCcceeeCCEEECCCCCcCCceeCHHHHHHhhhhcc
Confidence 99999999999 677777643221123677777 89999999999999999999999999998765
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-69 Score=551.57 Aligned_cols=356 Identities=19% Similarity=0.256 Sum_probs=313.6
Q ss_pred ccCCcceeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhc
Q 013681 58 NLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR 137 (438)
Q Consensus 58 ~~~~~~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~ 137 (438)
+...+.-|||++|+++.+++|++.||.++.++.+.++.++|+|+|++|++|||||.+. +. ....++.+.|.|+
T Consensus 17 ~~~~~~mMkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~g-----~~--~~~~i~~l~p~li 89 (398)
T 4dye_A 17 NLYFQSMMKITDVDVWVVNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGETMWG-----AP--VAAIVRRMAPDLI 89 (398)
T ss_dssp ------CCCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECS-----HH--HHHHHHHHHHHHT
T ss_pred ccccCCCceEEEEEEEEEeecccccccccccccccceEEEEEEEECCCCEEEEeecCc-----hH--HHHHHHHHHHHHc
Confidence 3343445999999999999999999999999999999999999999999999999851 22 2233467899999
Q ss_pred CCCCCCHHHHHHHHHHH--CCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeee------CCC---CH
Q 013681 138 QSPPTTLNFALDEIARI--LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI------PAV---SP 205 (438)
Q Consensus 138 g~~~~~~~~~~~~l~~~--~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i------~~~---~~ 205 (438)
|+++.+++.+|+.|+.. ..+...+++++|||+|||||+||..|+|||+||||. ++++|+|.++ +.. ++
T Consensus 90 G~d~~~~~~~~~~l~~~~~~~g~~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~r~~v~~y~s~~~~~~~g~~~~~~~ 169 (398)
T 4dye_A 90 GTSPFALEAFHRKQHMVPFFYGYLGYAAIAAVDVACWDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLP 169 (398)
T ss_dssp TCCTTCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEEBEEEECGGGSTTCCTTTHH
T ss_pred CCCccCHHHHHHHHHhhhhhhccccHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCcCCeEEEEEEEeccccCCcccCCCH
Confidence 99999999999988531 111123589999999999999999999999999997 6899999987 443 36
Q ss_pred HHHHHHHHHHhhc-CCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCC
Q 013681 206 AEASELASKYCKL-GFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPV 284 (438)
Q Consensus 206 ~~~~~~~~~~~~~-Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl 284 (438)
+++.+++++++++ ||++||+|+|.++++|++++++||+..|++.|+||||++|++++|++++++|+++++ .|||||+
T Consensus 170 e~~~~~a~~~~~~~G~~~~K~KvG~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~ 247 (398)
T 4dye_A 170 KAMAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDL--EYLEDPC 247 (398)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCS
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCC--CEEcCCC
Confidence 8999999999999 999999999998999999999999966999999999999999999999999999997 5999999
Q ss_pred CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 285 HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 285 ~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
+ |++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.
T Consensus 248 ~--d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 321 (398)
T 4dye_A 248 V--GIEGMAQVKA----KVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKALAAHCETFGLGMNLHSGG 321 (398)
T ss_dssp S--HHHHHHHHHH----HCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSC
T ss_pred C--CHHHHHHHHh----hCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcCCc
Confidence 9 8999999986 68999999999999999999999999999999999997 999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhcCCcceeecCC-CcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcc
Q 013681 364 ETRLATGFALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 364 es~ig~~a~~hla~al~~~~~~e~~~-pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
|++|+.+|++|++++++|..+ +.+. +..+.++++ +++.++||++.+|++||||+++|++++++|+
T Consensus 322 e~~i~~aa~l~laaa~p~~~~-~~d~~~~~~~~d~~-~~~~~~~G~i~vp~~PGlGve~d~~~l~~~~ 387 (398)
T 4dye_A 322 ELGIATAAHLAVVSSTPVLSR-AIDSMYYLHADDII-EPLHLENGRLRVPSGPGLGVSVDEDKLRHYA 387 (398)
T ss_dssp CCHHHHHHHHHHHHTCTTCCS-CBCCSGGGBSCCSB-SCCCEETTEEECCCSSBTCCCBCHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCccce-eecccchhhhhhcc-CCceeeCCEEECCCCCCCCceeCHHHHHHHH
Confidence 999999999999999998764 3333 234556666 6788999999999999999999999999987
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-69 Score=545.59 Aligned_cols=349 Identities=17% Similarity=0.253 Sum_probs=315.3
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH-HHHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~i~~~l~g~~~~ 142 (438)
.|||++++++.+++|++.||.++.++.+.++.++|+|+|++|++||||+.+.+.. .......+ +.+.|.|+|+++.
T Consensus 26 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~---~~~~~~~i~~~l~p~l~G~d~~ 102 (383)
T 3toy_A 26 TAAITGVTARAVITPMKRPLRNAFGVIDSGPLVLIDVTTDQGVTGHSYLFAYTRL---ALKPLVHLVEDIGRELAGKALV 102 (383)
T ss_dssp CCBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEESSSCEEEEEEECSSGG---GHHHHHHHHHHHHHHTTTCBCC
T ss_pred CCEEEEEEEEEEeccCCCcccCccccccceeEEEEEEEECCCCEEEEEeeCCCCc---hHHHHHHHHHHHHHHhCCCCCC
Confidence 3999999999999999999999999999999999999999999999999875431 11222223 5689999999999
Q ss_pred CHHHHHHHHHHHC--CCC--hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhc
Q 013681 143 TLNFALDEIARIL--PGS--EFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKL 218 (438)
Q Consensus 143 ~~~~~~~~l~~~~--~g~--~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (438)
+++ +|+.|++.. .|+ ..+++++|||+||||++||..|+|||+||||.++++|+|.+++..+++++.+++++++++
T Consensus 103 ~~e-~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~s~g~~~~e~~~~~a~~~~~~ 181 (383)
T 3toy_A 103 PVD-LMKAMDAKFRLLGWQGLVGMAVSGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDE 181 (383)
T ss_dssp HHH-HHHHHHHHTTTTCCSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCCCEEEEEECSSCCHHHHHHHHHHHHHT
T ss_pred cHH-HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEeEecCCCCHHHHHHHHHHHHHc
Confidence 999 999998763 232 357899999999999999999999999999999999999998889999999999999999
Q ss_pred -CCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHH
Q 013681 219 -GFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDV 295 (438)
Q Consensus 219 -Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L 295 (438)
||++||+|+|. ++++|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|
T Consensus 182 ~G~~~~KlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l 259 (383)
T 3toy_A 182 HGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDL--TWIEEPVPQENLSGHAAV 259 (383)
T ss_dssp SCCCEEEEECCSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHH
T ss_pred cCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCC--CEEECCCCcchHHHHHHH
Confidence 99999999997 79999999999999 58999999999999999999999999999997 599999999999999999
Q ss_pred HHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHH
Q 013681 296 SNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALH 374 (438)
Q Consensus 296 ~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~h 374 (438)
++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +++|
T Consensus 260 ~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~------a~lh 329 (383)
T 3toy_A 260 RE----RSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVGGITGWLNVAGQADAASIPMSSHILPE------ASAH 329 (383)
T ss_dssp HH----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCCBCCCSCHH------HHHH
T ss_pred Hh----hcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCHHH------HHHH
Confidence 86 68999999999999999999999999999999999997 9999999999999999999999753 5789
Q ss_pred HHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 375 LAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 375 la~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
+++++++..+.|+.. +.++++.+++.++|| +.+|++||||+++|++++++|++.
T Consensus 330 l~aa~p~~~~~e~~~---~~~~~~~~~~~~~~G-i~~p~~PGlGve~d~~~l~~~~v~ 383 (383)
T 3toy_A 330 VLPVTPTAHFLEVLD---FAGAILTEPLRVIDG-KVTAKGPGLGLAWNESAVAKYQVT 383 (383)
T ss_dssp HGGGCTTBCCEEECC---SSGGGBSSCCCCBTT-EECCCCSBTSCCBCHHHHHHHEEC
T ss_pred HHHhCCCCceeeccc---hhhhhccCCCeeeCC-EECCCCCcCCccCCHHHHHhhhCC
Confidence 999999998887652 335566777889999 999999999999999999999863
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-69 Score=551.08 Aligned_cols=356 Identities=17% Similarity=0.252 Sum_probs=320.7
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHHH-HHHHHH-HhhHhcCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKA-LVKVRE-ACQFLRQS 139 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~~-~~~~~~-i~~~l~g~ 139 (438)
.|||++|+++.+++|++.||.++.++.+.++.++|+|+| +|++|||||.+. |.|++++.+. ...+++ +.|.|+|+
T Consensus 6 ~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~lV~v~t-~G~~G~GE~~~~~~p~~~~et~~~~~~~i~~~l~p~liG~ 84 (400)
T 3mwc_A 6 SARIDGVSLYEIVIPMKIPFQISSGTCYTRRSLVVEIRE-GDLFGYGESAPFEEPFYLGETLETTKVILKNHLLPMILGK 84 (400)
T ss_dssp CCCCCEEEEEEEEEECSSCCCBTTBCCCEEEEEEEEEEE-TTEEEEEEECCBSSTTSTTCBHHHHHHHHHHTHHHHHTTC
T ss_pred CcEEEEEEEEEEeccccCceEccCceEeeeeEEEEEEEE-CCeEEEEecccCCCCccccCcHHHHHHHHHHHHHHHHcCC
Confidence 499999999999999999999999999999999999999 999999999986 5566654443 333444 78999999
Q ss_pred CCCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC-------------CCCCceeeeeeeCCC-C-
Q 013681 140 PPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG-------------GASNSLSTAITIPAV-S- 204 (438)
Q Consensus 140 ~~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg-------------g~~~~ip~~~~i~~~-~- 204 (438)
++.+++.+|+.|+..+.|+ +++++|||+||||++||..|+|||+||| +.++++|+|+++++. +
T Consensus 85 d~~~~e~~~~~l~~~~~g~--~~A~said~ALwDl~gk~~g~Pl~~LLGG~~~~~~~~~~~~~~r~~v~~~~s~g~~~~~ 162 (400)
T 3mwc_A 85 EPLSIEEFNHLIKNGIRGN--HFARCGVENAYWDLIAKKNKISLKAMIEKKMKNLGVKQEYLASNNYIESGAALGIPEDG 162 (400)
T ss_dssp CCSSHHHHHHHHHHSCCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHTTCCGGGGCBCSEEEBCEEECCCTTC
T ss_pred CCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCcccccccccccccCCCeEEeeEEeccCCCC
Confidence 9999999999998766665 5699999999999999999999999999 558899999998854 6
Q ss_pred -HHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEec
Q 013681 205 -PAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQ 282 (438)
Q Consensus 205 -~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEq 282 (438)
++++.+++++++++||++||+|+++ ++|++++++||+ .++++.|+||||++|++++ ++++++|+++++ .||||
T Consensus 163 ~~e~~~~~a~~~~~~G~~~iKlKv~~--~~d~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~~~~~~l~~~~i--~~iEq 237 (400)
T 3mwc_A 163 RIETLIHQVEESLQEGYRRIKIKIKP--GWDVEPLQETRRAVGDHFPLWTDANSSFELDQ-WETFKAMDAAKC--LFHEQ 237 (400)
T ss_dssp CHHHHHHHHHHHHHHTCSCEEEECBT--TBSHHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHHHGGGCC--SCEES
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCc--chHHHHHHHHHHhcCCCCEEEEeCCCCCCHHH-HHHHHHHHhcCC--CEEeC
Confidence 9999999999999999999999964 789999999999 5799999999999999999 999999999997 49999
Q ss_pred CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEcc
Q 013681 283 PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 283 Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (438)
|++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++|+|+
T Consensus 238 P~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~ 313 (400)
T 3mwc_A 238 PLHYEALLDLKELGE----RIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWGGT 313 (400)
T ss_dssp CSCTTCHHHHHHHHH----HSSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECC
T ss_pred CCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEEEcchhhCCHHHHHHHHHHHHHcCCEEEecC
Confidence 999999999999986 68999999999999999999999999999999999997 9999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhhcCCccee-ecCCCc-cccc--CCCCCceeeeCcEEecCCCCCccceeChhhhhhcccccc
Q 013681 362 MIETRLATGFALHLAAGLGCIKYV-NLNTPF-LLSE--DPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCC 434 (438)
Q Consensus 362 ~~es~ig~~a~~hla~al~~~~~~-e~~~pl-~~~~--~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~ 434 (438)
++||+||++|++|+++ +++..+. +++++. ++.+ |++. +.++||++.+|++||||+++|++++++|+++..
T Consensus 314 ~~es~i~~aa~~hlaa-~~~~~~~~d~~~~~~~~~~~~d~~~--~~~~~G~i~~p~~PGlGve~d~~~l~~~~~~~~ 387 (400)
T 3mwc_A 314 MPESGLGARFLISLAS-FRGFVFPADVAASEKWYGKGNDLVE--NTMTDGKIYVPDEPGASFDMTLSHLEALGKKIW 387 (400)
T ss_dssp SCCCHHHHHHHHHHTT-BTTBCSCBCCCCHHHHHCTTTSSSC--CCEETTEEECCCSBTTTTTCCHHHHHHHEEEEE
T ss_pred CCCCHHHHHHHHHHHc-CCCCcceeccCchhhhhhcccCeeE--EEEECCEEECCCCCCcCcccCHHHHHhhccccE
Confidence 9999999999999988 8887764 455543 2334 6665 788999999999999999999999999997653
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-68 Score=542.80 Aligned_cols=356 Identities=18% Similarity=0.288 Sum_probs=313.6
Q ss_pred CcceeeEEEEEEEEEEeec-cCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC-CCCchHHH-HHHHHHHHhhHhc
Q 013681 61 ETFWVDVQRAEGRELNVAL-SAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP-LVTGDQTK-ALVKVREACQFLR 137 (438)
Q Consensus 61 ~~~~~~I~~i~~~~~~~pl-~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~-~~s~~~~~-~~~~~~~i~~~l~ 137 (438)
.+-.|||++|+++.+++|+ +.||++|.++.+.++.++|||+|++|++|||||.+.+ .++.+... ....++.+.+.+.
T Consensus 6 ~~~sMKI~~I~~~~~~lPl~~~p~~~a~g~~~~~~~~lV~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 85 (376)
T 4h2h_A 6 HHHSLKIAEIQLFQHDLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGALAALEVLASGLA 85 (376)
T ss_dssp ---CCBEEEEEEEEEEEEBTTCCBCCTTCCBSEEEEEEEEEEETTSCEEEEEECCSSSSSSSCCHHHHHHHHHHHHHTTT
T ss_pred CCCCeEEeEEEEEEEecccCCCCeEecCEEEEEEEEEEEEEEECCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 4456999999999999998 6699999999999999999999999999999999864 33333222 3334567889999
Q ss_pred CCCCCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHh
Q 013681 138 QSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYC 216 (438)
Q Consensus 138 g~~~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~ 216 (438)
|+++.+.+ ++..+...+.++ +++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+++++++
T Consensus 86 g~d~~~~~-~~~~~~~~~~~~--~~A~said~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~y~s~~~~~~~~~~~~a~~~~ 162 (376)
T 4h2h_A 86 GAEALPLP-LHTRMDSLLCGH--NYAKSALDIAVHDLWGKRLGVPVHELLGGALTDSVSSYYSLGVMEPDEAARQALEKQ 162 (376)
T ss_dssp TCBSSHHH-HHHHHHHHCSCC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEEECEEEECSCCHHHHHHHHHHHH
T ss_pred CCccCcHH-HHHHHHHhhccc--HHHHHHHHHhhhHHHHHhcCCCceecCCCCcCCceeEeeecccCCHHHHHHHHHHHH
Confidence 99998876 445566666665 568999999999999999999999999997 78999999999999999999999999
Q ss_pred hcCCcEEEEecCC-CchHHHHHHHHHHh-h-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHH
Q 013681 217 KLGFSTLKLNVGR-NITADFDVLQAIHA-V-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLH 293 (438)
Q Consensus 217 ~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a 293 (438)
++||+++|+|+|. ++++|+++++++|+ + |++++||||||++|++++|++++++|+++++ |||||++ ++++++
T Consensus 163 ~~G~~~~KiKvg~~~~~~di~~v~~vr~a~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~---~iEeP~~--~~~~~~ 237 (376)
T 4h2h_A 163 REGYSRLQVKLGARPIEIDIEAIRKVWEAVRGTGIALAADGNRGWTTRDALRFSRECPDIPF---VMEQPCN--SFEDLE 237 (376)
T ss_dssp HHTCSEEEEECCSSCHHHHHHHHHHHHHHHTTSCCEEEEECTTCCCHHHHHHHHHHCTTSCE---EEESCSS--SHHHHH
T ss_pred hcCceEEEEecCCCCHHHHHHHHHHHHhhccCCeeEEEEeeccCCCHHHHHHHHHHHhhccc---cccCCcc--hhhhHh
Confidence 9999999999996 68999999999998 4 7999999999999999999999999999874 9999995 578899
Q ss_pred HHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHH
Q 013681 294 DVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFA 372 (438)
Q Consensus 294 ~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~ 372 (438)
.|++ .+++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+|+++|+
T Consensus 238 ~l~~----~~~~pia~dE~~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~~~~~~~~i~~aa~ 313 (376)
T 4h2h_A 238 AIRP----LCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQHMRAFRDFCAARNLPHTCDDAWGGDIVSAAC 313 (376)
T ss_dssp HHGG----GCCSCEEESTTCCSHHHHHHHHHTTCCSEECCBHHHHTSHHHHHHHHHHHHHHTCCEECBCSSCSHHHHHHH
T ss_pred hhhh----cccCccccCcccCCHHHHHHHHHhhccCccccccceeCCcHHHHHHHHHHHHcCCCEEeCCCCccHHHHHHH
Confidence 8875 68999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHhhcCCcce--eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhh
Q 013681 373 LHLAAGLGCIKY--VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSC 428 (438)
Q Consensus 373 ~hla~al~~~~~--~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~ 428 (438)
+|++++.++... .+++.|+....+.+.+++.++||++.+|++||||+++|+|+|.+
T Consensus 314 ~hlaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld~e~L~~ 371 (376)
T 4h2h_A 314 THIASTVLPRLMEGAWLAQPYVAEHYDAENGVRIEGGRIRVPQGPGLGLTIDPERFGP 371 (376)
T ss_dssp HHHHTTSCGGGEEECCCSGGGBSCCSSTTTCCCEETTEEECCCSSBTSCCCCTTTTCS
T ss_pred HHHHHhCCccccccccccCchhhhhhccCCCCeEECCEEECCCCCCCCcEECHHHcCC
Confidence 999988755322 24566776666677788899999999999999999999999864
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-68 Score=543.31 Aligned_cols=353 Identities=17% Similarity=0.233 Sum_probs=303.0
Q ss_pred eeEEEEEEEEEEeeccCCc-ccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHH-HHhhHhcCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPL-SLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPT 142 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~-~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~i~~~l~g~~~~ 142 (438)
|||++|+++.+++|++.|| .++.++.+.++.++|+|+|++|++||||+.+...+.++ ......++ .+.|.|+|+++.
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~~a~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~-~~~~~~i~~~l~p~liG~d~~ 79 (372)
T 3tj4_A 1 MKITAVEPFILHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSD-RLITSCISDCYAPLLLGEDAS 79 (372)
T ss_dssp CBEEEEEEEEEEEECC------------EEEEEEEEEEETTSCEEEEEEEECCCHHHH-HHHHHHHHHTTHHHHTTSBTT
T ss_pred CEEEEEEEEEEEecCCCCccCCCccccCceeEEEEEEEECCCCEEEEeccCccccCcH-HHHHHHHHHHHHHHhCCCChh
Confidence 7999999999999999999 99999999999999999999999999999875422221 11222344 488999999999
Q ss_pred CHHHHHHHHHHHC----CC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCc-eeeeeeeCC---CCHHHHHHHH
Q 013681 143 TLNFALDEIARIL----PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNS-LSTAITIPA---VSPAEASELA 212 (438)
Q Consensus 143 ~~~~~~~~l~~~~----~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~-ip~~~~i~~---~~~~~~~~~~ 212 (438)
+++.+|+.|++.. .+ ...+++++|||+||||++||..|+|||+||||..++ +|+|.+++. .+++++.+++
T Consensus 80 ~~~~~~~~l~~~~~~~~~g~~g~~~~A~said~AlwDl~gk~~g~Pv~~llGg~~~~~v~~y~s~~~~~~~~~~~~~~~a 159 (372)
T 3tj4_A 80 DHSRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWHYLGGARTAGVEAYNTDIGWLSFTLEDLLAGS 159 (372)
T ss_dssp CHHHHHHHHHTCHHHHTTCSSTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSCEEEEECTTCCTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHhhHhhcCCcccHHHHHHHHHHHHHHHHhccccCCcHHHHcCCCCCCCeEEEEecCCccCCCHHHHHHHH
Confidence 9999999997632 22 345789999999999999999999999999998654 999997322 3899999999
Q ss_pred HHHhhc-CCcEEEEecCC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCCh
Q 013681 213 SKYCKL-GFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289 (438)
Q Consensus 213 ~~~~~~-Gf~~iKlKvG~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~ 289 (438)
++++++ ||++||+|+|. ++++|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++++|+
T Consensus 160 ~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~ 237 (372)
T 3tj4_A 160 ARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDI--YWFEEPLWYDDV 237 (372)
T ss_dssp HHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCE--EEEESCSCTTCH
T ss_pred HHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCC--CEEECCCCchhH
Confidence 999999 99999999994 789999999999995 6999999999999999999999999999987 599999999999
Q ss_pred hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEcc--CCchh
Q 013681 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG--MIETR 366 (438)
Q Consensus 290 ~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s--~~es~ 366 (438)
+++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ +.++
T Consensus 238 ~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~g~~~~~- 312 (372)
T 3tj4_A 238 TSHARLAR----NTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQVADLALAHRLPVVPHAGEMSQV- 312 (372)
T ss_dssp HHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCCBCCCCTTTTTT-
T ss_pred HHHHHHHh----hcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCchHHHH-
Confidence 99999986 68999999999999999999999999999999999997 9999999999999999999999 7664
Q ss_pred HHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 367 LATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 367 ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
++|+++++++..+.|+. |+ .++++.+++.++||++.+|++||||+++|++++++|+.++
T Consensus 313 -----~~~l~aa~~~~~~~e~~-~~--~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~ 371 (372)
T 3tj4_A 313 -----HVHLSYWHPASTILEYI-PW--IKDHFEEPIHVRDGVYKRPEQPGASTTPLAESFTRYGKAV 371 (372)
T ss_dssp -----HHHHHHHCTTBCCEEEC-CS--SGGGBSSCCCEETTEECCCCSSBCSCCBCHHHHHHHEECC
T ss_pred -----HHHHhhhCCCCceeeec-hH--HHHhccCCCceeCCEEECCCCCCCCCcCCHHHHHHhhhcc
Confidence 67999999999998887 42 2456777889999999999999999999999999998765
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-68 Score=546.21 Aligned_cols=350 Identities=19% Similarity=0.285 Sum_probs=315.1
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH-HHHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~i~~~l~g~~~~ 142 (438)
.|||++|+++.+++|+++||.++.++.+.++.++|+|+|++|++||||+.+.+.. .......+ +.+.|.|+|+++.
T Consensus 27 ~mkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~V~v~td~G~~G~GE~~~~~~~---~~~~~~~~~~~l~p~liG~d~~ 103 (390)
T 3ugv_A 27 TLTFRKLTARPVLLKLQRPVTARIATIPDWPLILIDIETEEGVPGRAYLEPYVPK---AMKYLVPALHDMSDMLAGQPLA 103 (390)
T ss_dssp CCBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCCEEEEECCSCGG---GHHHHHHHHHHHHHHHTTSBCC
T ss_pred CCEEEEEEEEEEEecCCCCccCcccccccceEEEEEEEECCCCEEEEEeecCCCc---hHHHHHHHHHHHHHHHCCCCcc
Confidence 3999999999999999999999999999999999999999999999999875431 11222223 5689999999999
Q ss_pred CHHHHHHHHHHHC--CC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC---CCHHHHHHHHHHH
Q 013681 143 TLNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA---VSPAEASELASKY 215 (438)
Q Consensus 143 ~~~~~~~~l~~~~--~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~---~~~~~~~~~~~~~ 215 (438)
++ .+|+.|++.. .| ...+++++|||+||||++||..|+|||+||||.++++|+|.+++. .+++++.++++++
T Consensus 104 ~~-~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pl~~LLGg~~~~v~~y~s~g~~~~~~~e~~~~~a~~~ 182 (390)
T 3ugv_A 104 PA-EIYDKTRKSLHFVGYAGLSMIAASGVDMAVWDALARAANMPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVELK 182 (390)
T ss_dssp HH-HHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCCEEEEEECSCCCSSCHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhhCCcchHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCceEEEEecccccCCCHHHHHHHHHHH
Confidence 99 9999998753 22 235789999999999999999999999999999999999998776 7899999999999
Q ss_pred hhc---CCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChh
Q 013681 216 CKL---GFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWS 290 (438)
Q Consensus 216 ~~~---Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~ 290 (438)
+++ ||++||+|+|. ++++|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|++
T Consensus 183 ~~~~~~G~~~iKlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~ 260 (390)
T 3ugv_A 183 AEGQGTGFKGLKLRMGRDDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGL--EWIEEPVVYDNFD 260 (390)
T ss_dssp HTTCTTCCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCC--SEEECCSCTTCHH
T ss_pred HHhhhCCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCCcccHH
Confidence 999 99999999997 79999999999999 57999999999999999999999999999997 5999999999999
Q ss_pred hHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHH
Q 013681 291 GLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (438)
Q Consensus 291 ~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (438)
++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+
T Consensus 261 ~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~----- 331 (390)
T 3ugv_A 261 GYAQLRH----DLKTPLMIGENFYGPREMHQALQAGACDLVMPDFMRIGGVSGWMRAAGVAGAWGIPMSTHLYPE----- 331 (390)
T ss_dssp HHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHHHHHHHHHHHHHHTCCBCCBSCHH-----
T ss_pred HHHHHHH----hcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCHHH-----
Confidence 9999986 68999999999999999999999999999999999997 9999999999999999999999754
Q ss_pred HHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 370 GFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 370 ~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
+++|+++++++..+.|+.. +.++++.+++.++||++.+|++||||+++|++++++|+++
T Consensus 332 -a~lhl~aa~p~~~~~e~~~---~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~~~~ 390 (390)
T 3ugv_A 332 -VGAHVMRVTETAHWLEWQS---WADPILQEPYALSDGDLIVPDKPGLGLDWDEDVVAANLVE 390 (390)
T ss_dssp -HHHHHHTTCTTBCCEEECC---TTGGGBSSCCCEETTEEECCSSSBTCCCBCHHHHHTTBC-
T ss_pred -HHHHHHHhCCCCceeeccc---hhhhhccCCCeeECCEEECCCCCcCCCCcCHHHHHhhhcC
Confidence 5789999999998887652 3355667788899999999999999999999999999864
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-68 Score=542.98 Aligned_cols=356 Identities=18% Similarity=0.257 Sum_probs=319.0
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHH-HHHHHHH-HhhHhcCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQS 139 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-i~~~l~g~ 139 (438)
.|||++++++.+++|++.||.++.++.+.++.++|+|+|++|.+||||+.+. |.|+++... ....+++ +.|.|+|+
T Consensus 19 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~ 98 (386)
T 1wue_A 19 HMNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPLLLTE 98 (386)
T ss_dssp CCCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHTTS
T ss_pred cCEEEEEEEEEEecccCCCccccceEEecCcEEEEEEEECCCCEEEEEeecCCCCcccCCcHHHHHHHHHHHHHHHHcCC
Confidence 3999999999999999999999999999999999999999999999999875 346554333 3334555 78999999
Q ss_pred CCCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCC-CHHHHHHHHHHHhhc
Q 013681 140 PPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV-SPAEASELASKYCKL 218 (438)
Q Consensus 140 ~~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~-~~~~~~~~~~~~~~~ 218 (438)
++.+++.+|+.|.. +.|+ +++++|||+||||++||..|+|||+||||.++++|+|.+++.. +++++.+++++++++
T Consensus 99 d~~~~~~l~~~l~~-~~g~--~~A~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~g~~~~~~~~~~~a~~~~~~ 175 (386)
T 1wue_A 99 AIEQPQEVSTIFEE-VKGH--WMGKAALETAIWDLYAKRQQKSLTEFFGPTRRKIPVGISLGIQEDLPQLLKQVQLAVEK 175 (386)
T ss_dssp CCCSTHHHHHHGGG-SCSC--HHHHHHHHHHHHHHHHHHTTSBGGGGSSSCCSEEECCEEECCCSCHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHH-ccCc--hHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCeeEeeEEecCCCCHHHHHHHHHHHHHh
Confidence 99999999988865 4443 6799999999999999999999999999988899999988754 699999999999999
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHh
Q 013681 219 GFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 219 Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
||+++|+|+|+ ++|++++++||+..|++.|+||||++|++++| +++++|++|++ .|||||++++|++++++|++
T Consensus 176 G~~~~KiKvg~--~~d~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~- 249 (386)
T 1wue_A 176 GYQRVKLKIRP--GYDVEPVALIRQHFPNLPLMVDANSAYTLADL-PQLQRLDHYQL--AMIEQPFAADDFLDHAQLQR- 249 (386)
T ss_dssp TCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGH-HHHHGGGGSCC--SCEECCSCTTCSHHHHHHHT-
T ss_pred hhheEEEeeCc--HHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHH-HHHHHHHhCCC--eEEeCCCCcccHHHHHHHHH-
Confidence 99999999985 67999999999977999999999999999999 99999999997 59999999999999999985
Q ss_pred hccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 299 ~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++|+|+++||+||.+|++|++
T Consensus 250 ---~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla- 325 (386)
T 1wue_A 250 ---ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRALNLQFA- 325 (386)
T ss_dssp ---TCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHH-
T ss_pred ---hcCCCEEeCCccCCHHHHHHHHHcCCCCEEEEchhhhCCHHHHHHHHHHHHHCCCeEEECCCcccHHHHHHHHHHH-
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999997
Q ss_pred hcCCccee-ecCCCc-ccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 378 GLGCIKYV-NLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 378 al~~~~~~-e~~~pl-~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
++++..+. +++.+. ++.++++.+++.++||++.+|++||||+++|++++++|+++
T Consensus 326 a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~ 382 (386)
T 1wue_A 326 SQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLLKYSQY 382 (386)
T ss_dssp TSTTCCSCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBTCCCBCHHHHHHHEEE
T ss_pred hCCCCCcccccCchhhhhhhccccCCcEEECCEEECCCCCcCCceeCHHHHhhhhee
Confidence 67876653 444332 34567777888899999999999999999999999999864
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-68 Score=541.80 Aligned_cols=347 Identities=20% Similarity=0.316 Sum_probs=305.7
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHH-HHHHHHHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA-LVKVREACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~-~~~~~~i~~~l~g~~~~ 142 (438)
.|||++|+++.+++| ||.+ ++ ++.++|+|+|++|++||||+. +..+.+ .. ...++.+.|.|+|+++.
T Consensus 2 ~MkI~~i~~~~~~~p---~~~~----~~-~~~~~V~v~td~G~~G~GE~~--~~~~~~--~~~~~~~~~l~p~liG~d~~ 69 (393)
T 4dwd_A 2 SLKIAKVEALSVAMG---DGTG----WM-PTSAFVRITAEDGTVGWGEAS--PMLGGI--ASLGVVARDIAPFLEGQEVL 69 (393)
T ss_dssp CCBEEEEEEEEEECC---C----------CEEEEEEEEETTSCEEEEEEC--CGGGGH--HHHHHHHHHTHHHHTTSBGG
T ss_pred CCEEEEEEEEEEcCC---Cccc----cc-ceEEEEEEEECCCCEEEEEcc--CcHHHH--HHHHHHHHHHHHHHCCCCcc
Confidence 399999999999998 6654 45 889999999999999999998 221211 12 11245689999999999
Q ss_pred CHHHHHHHHHHHCC--C--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeee--C-CCCHHHHHHHH-H
Q 013681 143 TLNFALDEIARILP--G--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI--P-AVSPAEASELA-S 213 (438)
Q Consensus 143 ~~~~~~~~l~~~~~--g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i--~-~~~~~~~~~~~-~ 213 (438)
+++.+|+.|++... + ....++++|||+|||||+||..|+|||+||||. ++++|+|.++ + ..+++++.+++ +
T Consensus 70 ~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~s~~g~~~~~~e~~~~~a~~ 149 (393)
T 4dwd_A 70 DHAVLLDRMMHRLVKLGPEGIATAALAACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAARSVDEVVREVAR 149 (393)
T ss_dssp GHHHHHHHHHHHTGGGCCTTHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECCCSSSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeeEEecCccCCCCHHHHHHHHHH
Confidence 99999999987642 2 234589999999999999999999999999998 8999999996 2 47899999999 9
Q ss_pred HHhhcCCcEEEEecCC-------CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCC
Q 013681 214 KYCKLGFSTLKLNVGR-------NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH 285 (438)
Q Consensus 214 ~~~~~Gf~~iKlKvG~-------d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~ 285 (438)
+++++||++||+|+|. ++++|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++
T Consensus 150 ~~~~~G~~~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEqP~~ 227 (393)
T 4dwd_A 150 RVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGY--SWFEEPVQ 227 (393)
T ss_dssp HHHHHCCSEEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTC--SEEECCSC
T ss_pred HHHHcCCCEEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCC
Confidence 9999999999999997 789999999999995 8999999999999999999999999999997 49999999
Q ss_pred CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCc
Q 013681 286 RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIE 364 (438)
Q Consensus 286 ~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~e 364 (438)
++|++++++|++ ++++||++||++.+..+++++++.+ +|++|+|++++| ++++++++++|+++|+++++|++ +
T Consensus 228 ~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~-~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~-~ 301 (393)
T 4dwd_A 228 HYHVGAMGEVAQ----RLDITVSAGEQTYTLQALKDLILSG-VRMVQPDIVKMGGITGMMQCAALAHAHGVEFVPHQT-Q 301 (393)
T ss_dssp TTCHHHHHHHHH----HCSSEEEBCTTCCSHHHHHHHHHHT-CCEECCCTTTTTHHHHHHHHHHHHHHHTCEECCCCC-C
T ss_pred cccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEeecCC-C
Confidence 999999999986 6899999999999999999999999 999999999997 99999999999999999999999 9
Q ss_pred hhHHHHHHHHHHhhcCCc----ceee-cCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccccc
Q 013681 365 TRLATGFALHLAAGLGCI----KYVN-LNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCC 434 (438)
Q Consensus 365 s~ig~~a~~hla~al~~~----~~~e-~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~ 434 (438)
|+|+++|++|++++++|. .++| ++. ..+++.+++.++||++.+|++||||+++|++++++|+++..
T Consensus 302 ~~i~~aa~~hlaaa~p~~~~~~~~~e~~~~----~~~~~~~~~~~~~G~i~vp~~PGlGve~d~~~l~~~~~~~~ 372 (393)
T 4dwd_A 302 PGVGHFANIHVLSTLMHMTKPVELADRWDR----GRPVFRNPAEPVDGHFALGDAPGLGIVVDEDELASRATEIT 372 (393)
T ss_dssp SSHHHHHHHHHHHTCTTCCSCEEECTTGGG----GTTTBSSCCCCBTTEEECCCCSBTCCCBCHHHHHHHEEEEC
T ss_pred cHHHHHHHHHHHHhCCCcccccceeEeecC----cccccCCCceeECCEEECCCCCcCCCccCHHHHHhcccccc
Confidence 999999999999999998 4555 332 23667778889999999999999999999999999998765
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-68 Score=544.52 Aligned_cols=356 Identities=19% Similarity=0.212 Sum_probs=297.8
Q ss_pred ceeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH-HHHhhHhcCCCC
Q 013681 63 FWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPP 141 (438)
Q Consensus 63 ~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~i~~~l~g~~~ 141 (438)
.-|||++|+++++++||++||.+|.++.+.++.++|+|+||+|++||||+.+... +.. .....+ +.+.|.|+|+++
T Consensus 18 ~~MkIt~Ie~~~~~~Pl~~p~~~s~g~~~~~~~vlV~i~td~G~~G~Ge~~~~~~-~~~--~~~~~i~~~lap~LiG~dp 94 (388)
T 4h83_A 18 HGLTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIGEAYTGDEHE-TMF--DIDRIIHEELAPTLIGQDA 94 (388)
T ss_dssp --CBEEEEEEEEEEEEC----------CCEEEEEEEEEEETTSCEEEEEECCCCT-THH--HHHHHHHHTTHHHHTTSBT
T ss_pred CCCEEEEEEEEEEEeeccCCEECCCEEEEEEEEEEEEEEECCCCEEEEEecCCcc-cHH--HHHHHHHHHHHHHHcCCCh
Confidence 3599999999999999999999999999999999999999999999999976422 111 122223 347899999999
Q ss_pred CCHHHHHHHHHHHCC----C-ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC--CCHHHHHHHHHH
Q 013681 142 TTLNFALDEIARILP----G-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--VSPAEASELASK 214 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~----g-~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~~~~~~~~~~~~ 214 (438)
.+++.+|+.|++... + ...++|++|||+||||++||..|+|||+||||.++++|+|.+... .+++++.+++++
T Consensus 95 ~~ie~l~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGg~~~~~~~y~~~~~~~~~~~~~~~~~~~ 174 (388)
T 4h83_A 95 MAIERLWDSGYKVTFDILRDRRLGLVALAAVNTAIWDAVGKALKMPLWKLWGGYRNELPMIAIGGYYGEPLGSIADEMHN 174 (388)
T ss_dssp TCHHHHHHHHGGGGCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCSCSEEEEEEEECCTTCTTCSHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhccCCchhHHHHHHHHHHHHHHHHHHcCCChhhhcCCCcCceEEEeeccccCCCHHHHHHHHHH
Confidence 999999999986531 1 134678999999999999999999999999999999999877543 345778888999
Q ss_pred HhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCC-CChhh
Q 013681 215 YCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR-DDWSG 291 (438)
Q Consensus 215 ~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~-~d~~~ 291 (438)
++++||+++|+|+|. ++++|++++++||+ +++++.|+||||++|++++|++++++|+++++ .|||||+++ +|+++
T Consensus 175 ~~~~G~~~~Kikvg~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~~d~~~ 252 (388)
T 4h83_A 175 YQELGLAGVKFKVGGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNI--RWFEEPVEWHNDKRS 252 (388)
T ss_dssp HHHHTBSEEEEECSSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHTTTSCC--CCEESCBCSTTHHHH
T ss_pred HHHcCCceEeecCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHHHHHHHhhhcCc--ceeecCcccccchHH
Confidence 999999999999964 89999999999999 58999999999999999999999999999997 499999986 56889
Q ss_pred HHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHH
Q 013681 292 LHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATG 370 (438)
Q Consensus 292 ~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~ 370 (438)
+++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++.+|. ++ +
T Consensus 253 ~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~kia~~A~~~gv~v~~h~--~~----~ 322 (388)
T 4h83_A 253 MRDVRY----QGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPTAWLRTAAIATSYDVQMGHHE--EP----Q 322 (388)
T ss_dssp HHHHHH----HSSSCEEECTTCSSHHHHHHHHHHTCCSEECCCGGGTTCHHHHHHHHHHHHHTTCEECCCS--CH----H
T ss_pred HHHHHh----hcCCCccCCccccChHhHHHHHHcCCCCeEeecceeCCCHHHHHHHHHHHHHCCCEEEecC--HH----H
Confidence 999986 68999999999999999999999999999999999997 9999999999999999876664 44 4
Q ss_pred HHHHHHhhcCCcceeecCCCc--ccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 371 FALHLAAGLGCIKYVNLNTPF--LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 371 a~~hla~al~~~~~~e~~~pl--~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+++|+++++++..+.|+..+. .+..+.+.+++.++||++.+|++||||+++|+|+|++|+|+.
T Consensus 323 ~~~h~~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGve~d~d~l~~y~V~~ 387 (388)
T 4h83_A 323 VSTHLLASQPHGTIAECFHPDRDPFWWNMITNRPKLNNGTLTLSDRPGLGWDLNWDYIDQYRVSK 387 (388)
T ss_dssp HHHHHHHHSTTBCCEEEECTTTCHHHHHSBTTCCCCBTBEEECCSCSBTCCCBCHHHHHHHBC--
T ss_pred HHHHHHHHhhcCcceeecCcccchhhhhccCCCCeeECCEEECCCCCCCCeeeCHHHHHhccCCC
Confidence 568999999998888754432 133456777888999999999999999999999999999874
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-68 Score=542.86 Aligned_cols=357 Identities=20% Similarity=0.318 Sum_probs=320.4
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHH-HHHHHHH-HhhHhcCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQS 139 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-i~~~l~g~ 139 (438)
.|||++++++.+++|++.||.++.++.+.++.++|+|+|++|.+||||+.+. |.|+++... ....+++ +.|.|+|+
T Consensus 19 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~p~l~G~ 98 (393)
T 1wuf_A 19 HMYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPLLAQR 98 (393)
T ss_dssp CEECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHHHHHC
T ss_pred cCEEEEEEEEEEeeeccCCeEecceeEecCcEEEEEEEECCCCEEEEEeecCCCCcccCCCHHHHHHHHHHHHHHHHcCC
Confidence 3999999999999999999999999999999999999999999999999875 356554332 3334454 68999999
Q ss_pred CCCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCC-CHHHHHHHHHHHhhc
Q 013681 140 PPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV-SPAEASELASKYCKL 218 (438)
Q Consensus 140 ~~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~-~~~~~~~~~~~~~~~ 218 (438)
++.+++.+|+.|.. +.|+ +++++|||+||||++||..|+|||+||||.++++|+|.+++.. +++++.+++++++++
T Consensus 99 d~~~~~~l~~~l~~-~~g~--~~a~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~v~~~~~~g~~~~~e~~~~~a~~~~~~ 175 (393)
T 1wuf_A 99 KIRKPEEIQELFSW-IQGN--EMAKAAVELAVWDAFAKMEKRSLAKMIGATKESIKVGVSIGLQQNVETLLQLVNQYVDQ 175 (393)
T ss_dssp EESSTTHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCSEEEBCEEECCCSCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHH-ccCc--hHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCcceeeEEeCCCCCHHHHHHHHHHHHHH
Confidence 99999999988864 4443 6799999999999999999999999999988899999998754 699999999999999
Q ss_pred CCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHh
Q 013681 219 GFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 219 Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
||+++|+|+|+ ++|++++++||+..|++.|+||||++|++++| +++++|+++++ .|||||++++|++++++|++
T Consensus 176 G~~~~KiKvg~--~~d~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~- 249 (393)
T 1wuf_A 176 GYERVKLKIAP--NKDIQFVEAVRKSFPKLSLMADANSAYNREDF-LLLKELDQYDL--EMIEQPFGTKDFVDHAWLQK- 249 (393)
T ss_dssp TCCEEEEECBT--TBSHHHHHHHHTTCTTSEEEEECTTCCCGGGH-HHHHTTGGGTC--SEEECCSCSSCSHHHHHHHT-
T ss_pred hhHhheeccCh--HHHHHHHHHHHHHcCCCEEEEECCCCCCHHHH-HHHHHHHhCCC--eEEECCCCCcCHHHHHHHHH-
Confidence 99999999984 67999999999977999999999999999999 99999999997 59999999999999999985
Q ss_pred hccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 299 ~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++|+|+++||+||++|++|++
T Consensus 250 ---~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hla- 325 (393)
T 1wuf_A 250 ---QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGRAHNIALA- 325 (393)
T ss_dssp ---TCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHH-
T ss_pred ---hCCCCEEECCCcCCHHHHHHHHHhCCCCEEEeChhhhCCHHHHHHHHHHHHHcCCeEEecCCcccHHHHHHHHHHH-
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999997
Q ss_pred hcCCccee-ecCCCc-ccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 378 GLGCIKYV-NLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 378 al~~~~~~-e~~~pl-~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
++++..+. +++.+. ++.++++.+++.++||++.+|++||||+++|++.+++|++..
T Consensus 326 a~~~~~~~~~l~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~~~~~ 383 (393)
T 1wuf_A 326 ARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVLKKYTKST 383 (393)
T ss_dssp TSSSCCSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSBTSCCBCHHHHHTTEEEE
T ss_pred hCCCCCcccccCchhhhhhhhcccCCcEEECCEEECCCCCcCCCccCHHHHhhhceee
Confidence 68877653 566543 356777777888999999999999999999999999998654
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-67 Score=536.08 Aligned_cols=355 Identities=22% Similarity=0.299 Sum_probs=321.8
Q ss_pred eeEEEEEEEEEEeeccCCcccCCee--EeeeeEEEEEEEEcCCcEEEEEEecC-CCCCchHH-HHHHHHHHHhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSS--VENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQT-KALVKVREACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~--~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~s~~~~-~~~~~~~~i~~~l~g~~ 140 (438)
|||++++++.+++|++.||.++.++ ++.++.++|+|+|++|.+||||+.+. +.|+++.. .....++.++|.|.|++
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~l~~l~~~l~g~d 82 (378)
T 2qdd_A 3 LRITRLTVFHLDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPGLRAGIATLAPHLLGLD 82 (378)
T ss_dssp CCEEEEEEEEEEEEEEEEEECCC--CEEEEEEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEEEEEEeccccCceecccCcccccccceEEEEEEECCCCEEEEEEecCCCCcCCCCHHHHHHHHHHHHHHHCCCC
Confidence 8999999999999999999999998 89999999999999999999999987 77766432 33444567899999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
+.+++.+|+.|...+.+ .+++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+.+++++++|
T Consensus 83 ~~~~~~~~~~l~~~~~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~~~~~G 160 (378)
T 2qdd_A 83 PRSLDHVNRVMDLQLPG--HSYVKSPIDMACWDILGQVAGLPLWQLLGGEAATPVPINSSISTGTPDQMLGLIAEAAAQG 160 (378)
T ss_dssp TTCHHHHHHHHHHHSCS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSSCCCEEBEEEECSCCHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCCCceEEEecCCCHHHHHHHHHHHHHHh
Confidence 99999999999665655 4789999999999999999999999999997 78999999988889999999999999999
Q ss_pred CcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHH
Q 013681 220 FSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 220 f~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
|+++|+|+|. +++.|++++++||+ .++++.|++|+|++|++++|++++++|+ ++ + |||||++ |++++++|++
T Consensus 161 f~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~--i-~iEqP~~--d~~~~~~l~~ 234 (378)
T 2qdd_A 161 YRTHSAKIGGSDPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-AR--D-WIEQPCQ--TLDQCAHVAR 234 (378)
T ss_dssp CCEEEEECCSSCHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CC--C-EEECCSS--SHHHHHHHHT
T ss_pred hhheeecCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CC--c-EEEcCCC--CHHHHHHHHH
Confidence 9999999997 89999999999999 5789999999999999999999999998 86 4 9999998 8999999985
Q ss_pred hhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHH
Q 013681 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (438)
Q Consensus 298 ~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (438)
++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||+||++|++|++
T Consensus 235 ----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla 310 (378)
T 2qdd_A 235 ----RVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIEDVGGTALADTAALHLA 310 (378)
T ss_dssp ----TCCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEECCSSCCHHHHHHHHHHH
T ss_pred ----hCCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCcHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hhcCCc--ce-eecCCCcccccCCCCC-ceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 377 AGLGCI--KY-VNLNTPFLLSEDPFVG-GCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 377 ~al~~~--~~-~e~~~pl~~~~~~~~~-~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+++++. .| .|+ +| ++..|++.+ ++.++||++.+|++||||+++|++++++|+++.
T Consensus 311 aa~~~~~~~~~~d~-~~-~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 369 (378)
T 2qdd_A 311 ASTPEANRLASWLG-HA-HLADDPIPGQGARNRDGLATPPSAPGLGVIPDPEALGRPVASY 369 (378)
T ss_dssp HTSCTTTBCCBCCG-GG-GBSCCSSTTCSCCCBTTEECCCCSSBTCCCCCGGGSCSCSEEE
T ss_pred HcCCCcceeccccc-cc-hhhhccccCCCceEECCEEECCCCCcCCCccCHHHHhcceeee
Confidence 999983 33 355 55 446778877 888999999999999999999999999998554
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-67 Score=532.48 Aligned_cols=356 Identities=17% Similarity=0.276 Sum_probs=320.2
Q ss_pred eeEEEEEEEEEEeeccC-CcccCCe-eEeeeeEEEEEEEEcCCcEEEEEEecC-CCCCchHH-HHHHHHHHHhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSA-PLSLGLS-SVENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQT-KALVKVREACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~-p~~~s~~-~~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~s~~~~-~~~~~~~~i~~~l~g~~ 140 (438)
|||++++++.+++|++. ||.++.+ +.+.++.++|+|+|++|.+||||+.+. +.|+++.. .....+++++|.|.|++
T Consensus 4 MkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l~g~d 83 (371)
T 2ps2_A 4 LKIARIDVFQVDLPYSGGVYYLSAGREYRSFDATIVRITTDTGIEGWGESTPFGSNYIASHPRGVRAGIATMAPSLIGLD 83 (371)
T ss_dssp CCEEEEEEEEEEECBTTSCCCCC-------EEEEEEEEEETTSCEEEEEECCSTTTSSSCCHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEEEEEEecccCCCCeeecccceeccCceEEEEEEECCCCEEEEEEecCCcccCCCCHHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999 9999877 678899999999999999999999987 66766433 23344566899999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
+.+++.+|+.|...+.++ +++++|||+||||++||..|+|||+||||. ++++|+|.+++..+++++.+.+++++++|
T Consensus 84 ~~~~~~~~~~l~~~~~~~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~~a~~~~~~G 161 (371)
T 2ps2_A 84 PRRVDRINDAMDDALLGH--EDAKTAIDVACWDIFGKSVGLPVCELLGGRTNTRLPLISSIYVGEPEDMRARVAKYRAKG 161 (371)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSCEEBEEEECSCCHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 999999999998766553 689999999999999999999999999995 78999999998889999999999999999
Q ss_pred CcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHH
Q 013681 220 FSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 220 f~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
|+++|+|+|.+++.|++++++||+ .++++.|++|+|++|++++|++++++| +++++ |||||++ |++++++|++
T Consensus 162 f~~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i---~iE~P~~--~~~~~~~l~~ 236 (371)
T 2ps2_A 162 YKGQSVKISGEPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF---ALEAPCA--TWRECISLRR 236 (371)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC---EEECCBS--SHHHHHHHHT
T ss_pred hheEEeecCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC---cCcCCcC--CHHHHHHHHh
Confidence 999999999999999999999999 578999999999999999999999999 99874 9999998 8999999985
Q ss_pred hhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHH
Q 013681 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (438)
Q Consensus 298 ~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (438)
++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||+|+++|++|++
T Consensus 237 ----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla 312 (371)
T 2ps2_A 237 ----KTDIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQRDICLAAGYSVSVQETCGSDIAFAAIVHLA 312 (371)
T ss_dssp ----TCCSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHHHHH
T ss_pred ----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEecCCCcCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hhcCCcce-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 377 AGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 377 ~al~~~~~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
+++++..+ .+++.+.++.++++.+++.++||++.+|++||||+++|+++++++..
T Consensus 313 a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~ 368 (371)
T 2ps2_A 313 QTIPERSLRCILECRDMVTVKTADGAFDIQDGFATAPTTPGLGIMPRLDVLGEAVA 368 (371)
T ss_dssp TTSCTTTEEEECCGGGGBSCCCEECCCCCBTTEECCCCSSBTSCEECHHHHCSCSE
T ss_pred HhCCCcccccccccchhhhccccCCCceEECCEEECCCCCCCCCeeCHHHHhChhh
Confidence 99998764 46776666667777777888999999999999999999999998754
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-67 Score=543.13 Aligned_cols=349 Identities=18% Similarity=0.248 Sum_probs=309.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEee-eeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVEN-VENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~-~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~ 143 (438)
|||++|+++++++| ..|+.++.+.... .+.++|+|+|++|++||||+... + .....++.+.|.|+|+++.+
T Consensus 23 mkI~~i~~~~v~~P-~~~~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g~-----~--~v~~~i~~l~p~LiG~d~~~ 94 (441)
T 3vc5_A 23 MLIREVRVTPVAFR-DPPLLNAAGVHQPWALRTIVEVVTDEGITGLGETYGD-----L--AHLEQVRAAAARLPGLDVYA 94 (441)
T ss_dssp CBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTCCEEEEEEECC-----H--HHHHHHHHHHHTCTTSBTTC
T ss_pred cEEEEEEEEEEecC-CcccccccCccccceeEEEEEEEECCCCEEEEeCCCh-----H--HHHHHHHHHHHHhCCCChhH
Confidence 89999999999999 9999999886543 56799999999999999999631 2 12233567899999999999
Q ss_pred HHHHHHHHHHHCCCC----------------hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeee------
Q 013681 144 LNFALDEIARILPGS----------------EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI------ 200 (438)
Q Consensus 144 ~~~~~~~l~~~~~g~----------------~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i------ 200 (438)
++.+|+.|++.+.++ ...+|++|||+|||||+||..|+|||+||||. +++||+|..+
T Consensus 95 ~e~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~rd~v~~~a~~~~~~~~ 174 (441)
T 3vc5_A 95 LHRIYRRVADVVGANIVTDMHGLTGSSSRVKTVDRVFAAFEVACLDIQGKAAGRPVADLLGGKVRDAVPYSAYLFYKWAG 174 (441)
T ss_dssp HHHHHHHHHHHHTTCCCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSEEEBCEEEECBCSB
T ss_pred HHHHHHHHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEEEeecccccc
Confidence 999999998763211 23479999999999999999999999999997 7899985432
Q ss_pred ----------CCCCHHHHHHHHHHHhh-cCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHH
Q 013681 201 ----------PAVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLG 268 (438)
Q Consensus 201 ----------~~~~~~~~~~~~~~~~~-~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (438)
...+++++.++++++++ +||++||+|+|. ++++|++++++||+..|++.|+||||++|++++|+++++
T Consensus 175 ~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai~~~~ 254 (441)
T 3vc5_A 175 HPGKPEDRFGPALDPDGIVAQARLLIGEYGFRSIKLKGGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIRVGR 254 (441)
T ss_dssp CTTSCBCTTCCBCSHHHHHHHHHHHHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCSCHHHHHHHHH
T ss_pred CCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhCCCCcEeccCCCCCCHHHHHHHHH
Confidence 12689999999999887 499999999996 889999999999996699999999999999999999999
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHH
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~ 347 (438)
+|+++ + .|||||++ ++++|++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| ++++++++
T Consensus 255 ~L~~~-l--~~iEeP~~--~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~dii~~d~~~~GGitea~kia 325 (441)
T 3vc5_A 255 ALDGV-L--EYLEDPTP--GIDGMARVAA----EVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLVRSAHIA 325 (441)
T ss_dssp HTTTT-C--SEEECCSS--SHHHHHHHHT----TSSSCEEESSSCCSGGGHHHHHHHCCCSEEEECHHHHTSHHHHHHHH
T ss_pred HHHHH-H--HHhhccCC--CHHHHHHHHh----cCCCCEEeCCCCCCHHHHHHHHHhCCCCEEeechhhcCCHHHHHHHH
Confidence 99998 7 59999995 7999999985 68999999999999999999999999999999999998 99999999
Q ss_pred HHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee-ecCCCcccccCCC-CCceeeeCcEEecCCCCCccceeChhh
Q 013681 348 KATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPF-VGGCEVSGAIYNFTNARGQGGFLKWTI 425 (438)
Q Consensus 348 ~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~-e~~~pl~~~~~~~-~~~~~~~~G~~~~p~~pGlGv~ld~~~ 425 (438)
++|+++|+++++|++.|++|+++|++|++++++|..+. |.+.|+...+|++ .+++.++||++.+|++||||+++|+++
T Consensus 326 ~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~~~~d~~~~~~~~~d~~~~~~~~~~~G~i~~p~~PGLGveld~~~ 405 (441)
T 3vc5_A 326 TLCATFGIELSMHSNSHLGISLAAMTHLAAATPAITHACDTHTPWQDGQDVVAPGALRFVDGAVPVPDGPGLGVELDRDA 405 (441)
T ss_dssp HHHHHTTCEEEECCCSCCHHHHHHHHHHHHTCTTBCSCBCCCGGGGTTCCSBCTTSCCCBTTEEECCCSSBTSCCBCHHH
T ss_pred HHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCcceeecccchhhcccccccCCCceEECCEEECCCCCCCCceECHHH
Confidence 99999999999999999999999999999999998775 5555665545665 457889999999999999999999999
Q ss_pred hhhcc
Q 013681 426 VSCTQ 430 (438)
Q Consensus 426 l~~~~ 430 (438)
+++|+
T Consensus 406 l~~~~ 410 (441)
T 3vc5_A 406 LAVMH 410 (441)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99976
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-68 Score=538.26 Aligned_cols=350 Identities=16% Similarity=0.217 Sum_probs=306.1
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH---------HhhH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE---------ACQF 135 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~---------i~~~ 135 (438)
|||++|+++.+++|++.+. ++++.++ ++|+|+|++|++||||+.. +.+ .....+++ +.|.
T Consensus 3 MkI~~i~~~~~~~P~~~~~----~~~~~~~-~~V~v~td~G~~G~GE~~~----~~~--~~~~~i~~~~~~~~~~~l~p~ 71 (374)
T 3sjn_A 3 LKITDIEVLHLRVPAMDAD----CEWGEDA-VIVKVHTDKGIVGVGEADS----SPL--VVQACIEAPQTNFYCNGLKRL 71 (374)
T ss_dssp CBEEEEEEEEEESSCTTSC----CCTTSEE-EEEEEEETTSCEEEEEESS----CHH--HHHHHHHCCCSBTTBCCHHHH
T ss_pred cEEEEEEEEEEeccCcCCc----CcccceE-EEEEEEECCCCEEEEcCCC----ChH--HHHHHHHhhhccchHhHHHHH
Confidence 8999999999998877663 2233445 8999999999999999421 111 12223454 8899
Q ss_pred hcCCCCCCHHHHHHHHHHHCCC----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC-CCCceeeeeeeC-CCCHHHHH
Q 013681 136 LRQSPPTTLNFALDEIARILPG----SEFASVRAGVEMALIDAVANSIDIPLWRLFGG-ASNSLSTAITIP-AVSPAEAS 209 (438)
Q Consensus 136 l~g~~~~~~~~~~~~l~~~~~g----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg-~~~~ip~~~~i~-~~~~~~~~ 209 (438)
|+|+++.+++.+|+.|++...+ ....++++|||+||||++||..|+|||+|||| .++++|+|.... ..+++++.
T Consensus 72 liG~d~~~~~~~~~~l~~~~~~~~~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~e~~~ 151 (374)
T 3sjn_A 72 LIGENALEIERLWNKMYWGSNYMGRRGAGIHAISAIDIALWDIAGQFYGVPVHTLLGGKYRDKIRCYGTFIPADKPEDNV 151 (374)
T ss_dssp HTTSBTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECCCSSGGGGH
T ss_pred HcCCCcccHHHHHHHHHHhhhhcCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCcCCceeEEeccCCCCCHHHHH
Confidence 9999999999999999875432 23458999999999999999999999999999 588999993322 12348899
Q ss_pred HHHHHHhhcCCcEEEEecC---CCchHHHHHHHHHHhh-CCCcEEEEeCCCCCC-HHHHHHHHHHhhhCCCCCceEecCC
Q 013681 210 ELASKYCKLGFSTLKLNVG---RNITADFDVLQAIHAV-HPHCSFILDANEGYT-SEEAVEVLGKLNDMGVIPVLFEQPV 284 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG---~d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s-~~~A~~~l~~L~~~~l~~~~iEqPl 284 (438)
+.+++++++||++||+|+| .++++|++++++||+. ++++.|+||+|++|+ +++|++++++|+++++ .|||||+
T Consensus 152 ~~a~~~~~~Gf~~iKlk~g~~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i--~~iEqP~ 229 (374)
T 3sjn_A 152 AIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNL--NWIEEPV 229 (374)
T ss_dssp HHHHHHHTTTCSEEEEECTTTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCC--SEEECSS
T ss_pred HHHHHHHHcCCCEEEeccCCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCc--eEEECCC
Confidence 9999999999999999999 4789999999999994 899999999999999 9999999999999997 4999999
Q ss_pred CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC
Q 013681 285 HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 285 ~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
+++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++
T Consensus 230 ~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~- 304 (374)
T 3sjn_A 230 LADSLISYEKLSR----QVSQKIAGGESLTTRYEFQEFITKSNADIVQPDITRCGGITEMKKIYDIAQMNGTQLIPHGF- 304 (374)
T ss_dssp CTTCHHHHHHHHH----HCSSEEEECTTCCHHHHHHHHHHHHCCSEECCBTTTSSHHHHHHHHHHHHHHHTCEECCBCC-
T ss_pred CcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCC-
Confidence 9999999999986 68999999999999999999999999999999999997 99999999999999999999998
Q ss_pred chhHHHHHHHHHHhhcCCcceeecCC-CcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 364 ETRLATGFALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 364 es~ig~~a~~hla~al~~~~~~e~~~-pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
+|+|+++|++|++++++|..+.|+.. +..+.++++.+++.++||++.+|++||||+++|++++++|+++
T Consensus 305 ~~~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~ 374 (374)
T 3sjn_A 305 STGILLHASVHFLAACEQGTLMEFSQSSSPLFTSLVKNQLQFDNGFVAVSDAPGLGIELDEELIAKYRVN 374 (374)
T ss_dssp SCHHHHHHHHHHHHTCTTCCEEEEECCCCHHHHHSBTTCCCEETTEEECCCSSBTCCCBCHHHHHHHBCC
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEecCCcchhhhhhccCCCeeeCcEEECCCCCCCCCCcCHHHHHhccCC
Confidence 89999999999999999998888653 3344567888889999999999999999999999999999874
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-67 Score=542.32 Aligned_cols=349 Identities=19% Similarity=0.263 Sum_probs=307.6
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEe-eeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVE-NVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~-~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~ 142 (438)
.|||++|+++.+++| ..|+.++.+... ..+.++|+|+|++|++||||+... +. ....++.+.|.|+|+++.
T Consensus 27 ~mkIt~i~~~~v~~p-~~p~~~~~g~~~~~~~~~~V~v~td~G~~G~GE~~g~-----~~--~~~~i~~l~p~LiG~d~~ 98 (445)
T 3vdg_A 27 RIRITGARVTPVAFA-DPPLLNTVGVHQPYALRAVIQLDTDAGLTGLGETYAD-----TV--HLERLQAAAHAIVGRSVF 98 (445)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEECCC-----HH--HHHHHHHHHHHHTTCBTT
T ss_pred CCEEEEEEEEEEecC-CccccccccccccceeEEEEEEEECCCCeEEEeCCCh-----HH--HHHHHHHHHHHhCCCChh
Confidence 399999999999999 899999887654 356799999999999999999531 21 223356789999999999
Q ss_pred CHHHHHHHHHHHCCCC----------------hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeee-----
Q 013681 143 TLNFALDEIARILPGS----------------EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI----- 200 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~----------------~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i----- 200 (438)
+++.+|+.|++.+.++ ...++++|||+|||||+||..|+|||+||||. +++||+|.++
T Consensus 99 ~ie~i~~~l~~~~~~~~~~~~~g~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~~a~~~~~~~ 178 (445)
T 3vdg_A 99 STNVIRALISDALGGDRTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQVTGRPVSDLLGGAVRDAVPFSAYLFYKWA 178 (445)
T ss_dssp CHHHHHHHHHHHHTSCCCSCCTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSSSEEEBCEEEECBCS
T ss_pred hHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEeeeeccccc
Confidence 9999999999864211 34579999999999999999999999999997 7899986432
Q ss_pred -----------CCCCHHHHHHHHHHHhhc-CCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHH
Q 013681 201 -----------PAVSPAEASELASKYCKL-GFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL 267 (438)
Q Consensus 201 -----------~~~~~~~~~~~~~~~~~~-Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l 267 (438)
...+++++.+++++++++ ||++||+|+|. ++++|++++++||+..|++.|+||||++|++++|++++
T Consensus 179 ~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~Ai~~~ 258 (445)
T 3vdg_A 179 AHPGAEPDGWGAALDPDGIVAQARRMIDEYGFSAIKLKGGVFAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVKVA 258 (445)
T ss_dssp SSTTSCCCSSCCBCSHHHHHHHHHHHHHHHCCSSEEEECSSSCHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHH
T ss_pred ccCCccccccccCCCHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHH
Confidence 126899999999998875 99999999996 88999999999999669999999999999999999999
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHH
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~ 346 (438)
++|+++ + .|||||++ +++++++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| +++++++
T Consensus 259 ~~L~~~-l--~~iEeP~~--~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~d~~~~GGitea~ki 329 (445)
T 3vdg_A 259 AGLEGV-L--EYLEDPTP--GLDGMAEVAA----QAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQRSRLL 329 (445)
T ss_dssp HHTTTT-C--SEEECCSS--SHHHHHHHHH----HCSSCEEESSSCCSGGGHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHHhhH-H--HeeeCCCC--CHHHHHHHHh----cCCCCEEcCCcCCCHHHHHHHHHcCCCCEEeeCcceeCCHHHHHHH
Confidence 999998 7 59999995 7999999986 68999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee-ecCCCcccccCC-CCCceeeeCcEEecCCCCCccceeChh
Q 013681 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDP-FVGGCEVSGAIYNFTNARGQGGFLKWT 424 (438)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~-e~~~pl~~~~~~-~~~~~~~~~G~~~~p~~pGlGv~ld~~ 424 (438)
+++|+++|+++++|++.|++|+++|++|++++++|..+. |...|+.. ++. +.+++.++||++.+|++||||+++|++
T Consensus 330 a~lA~~~gv~v~~h~~~e~~i~~aa~~hlaaa~p~~~~~~d~~~~~~~-~d~~~~~~~~~~~G~i~~p~~PGLGveld~~ 408 (445)
T 3vdg_A 330 AGICDTFGLGLSMHSNSHLGISLAAMVHLAAATPNLTYACDTHWPWRH-EDVVAPGALNFCDGEVQVPATPGLGVEIDED 408 (445)
T ss_dssp HHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTCCSCBCCCGGGCC-CCSBCSSSSCEETTEEECCCSSBTSCCBCHH
T ss_pred HHHHHHcCCEEEEeCCcchHHHHHHHHHHHHhCCCcceeeccccchhh-cccccCCCceEECCEEECCCCCcCCCcCCHH
Confidence 999999999999999999999999999999999998765 44446544 444 456788999999999999999999999
Q ss_pred hhhhcc
Q 013681 425 IVSCTQ 430 (438)
Q Consensus 425 ~l~~~~ 430 (438)
++++|+
T Consensus 409 ~l~~~~ 414 (445)
T 3vdg_A 409 ALAALH 414 (445)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999976
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-66 Score=529.61 Aligned_cols=357 Identities=16% Similarity=0.241 Sum_probs=323.6
Q ss_pred eeEEEEEEEEEEeeccC-CcccCCee-EeeeeEEEEEEEEcCCcEEEEEEecC-CCCCchH-HHHHHHHHHHhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSA-PLSLGLSS-VENVENVAIRVELSNGCVGWGEVAVV-PLVTGDQ-TKALVKVREACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~-p~~~s~~~-~~~~~~~lV~v~t~~G~~G~GE~~~~-~~~s~~~-~~~~~~~~~i~~~l~g~~ 140 (438)
|||++++++.+++|++. ||+++.++ .+.++.++|+|+|++|.+||||+.+. +.|+++. ......++.++|.|.|++
T Consensus 3 mkI~~i~~~~~~~pl~~~p~~~s~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~~~~~~~~~i~~l~~~l~g~d 82 (379)
T 2rdx_A 3 LRITRIRLYKTDLPYVDGSYGWGAGNAITVARASVVVIDTDAGLQGCGEFTPCGENYMIAHSEGVDAFARLAAPQLLGQD 82 (379)
T ss_dssp CCEEEEEEEEEEEEBTTSCCEETTTEECSEEEEEEEEEEETTSCEEEEEEBCSSTTSSSCCTTHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEEEEEEeeecCCCCcEecCceeecccceEEEEEEECCCCEEEEEeecCCCCcCCCCHHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999 99999998 78899999999999999999999987 6666532 223334557899999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
+.+++.+|+.|...+.+ .+++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+.+++++++|
T Consensus 83 ~~~~~~~~~~l~~~~~g--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~a~~~~~~G 160 (379)
T 2rdx_A 83 PRQVARMERLMDHLVQG--HGYAKAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETRAELARHRAAG 160 (379)
T ss_dssp TTCHHHHHHHHHHHSSS--CHHHHHHHHHHHHHHHHHHHTCBHHHHTTSCCCSSEEBCEECCCSCSHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHhHHHhCCCHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcC
Confidence 99999999999655555 4789999999999999999999999999997 78999999988889999999999999999
Q ss_pred CcEEEEecCCCchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHh
Q 013681 220 FSTLKLNVGRNITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 220 f~~iKlKvG~d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
|+.+|+|+|.+++.|++++++||+. ++++.|++|+|++|++++|++++++|++++ + |||||++ |++.+++|++
T Consensus 161 f~~iKik~g~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~--i-~iE~P~~--~~~~~~~l~~- 234 (379)
T 2rdx_A 161 YRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLD--Y-ILEQPCR--SYEECQQVRR- 234 (379)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSC--C-EEECCSS--SHHHHHHHHT-
T ss_pred CCEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCC--e-EEeCCcC--CHHHHHHHHh-
Confidence 9999999998899999999999995 789999999999999999999999999997 4 9999998 8999999985
Q ss_pred hccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 299 ~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||+++++|++|+++
T Consensus 235 ---~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~~a~~~laa 311 (379)
T 2rdx_A 235 ---VADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRTRDFLIDNRMPVVAEDSWGGEIASAAVAHFAA 311 (379)
T ss_dssp ---TCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHHHHHHHHTTCCEEEECSBCSHHHHHHHHHHHH
T ss_pred ---hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCeEEEeeccCcHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred hcCCccee-ecC-CCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 378 GLGCIKYV-NLN-TPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 378 al~~~~~~-e~~-~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
++++..+. +++ +| ++.+|++.+++.++||++.+|++||||+++|++++++|++..
T Consensus 312 a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 368 (379)
T 2rdx_A 312 STPEEFLINSTDLMN-YNTRSTGLGGPTVHQGRLYASDTPGLGVTPDFNSLGAPVADW 368 (379)
T ss_dssp TSCTTTEEEECCGGG-GBSSCSEEECCEEETTEEECCCSSBTSEEECHHHHCSCSEEE
T ss_pred cCCCccccccccccc-hhhhccccCCceEECCEEEcCCCCcCCeeeCHHHHhcceeee
Confidence 99986544 222 45 336777777888999999999999999999999999998654
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-67 Score=536.89 Aligned_cols=350 Identities=16% Similarity=0.196 Sum_probs=307.2
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~~ 143 (438)
|||++|+++.+++|+ | . +..++.++|+|+|++|++||||+...+ ++++. ....+++ +.|.|+|+++.+
T Consensus 1 MkIt~i~~~~v~~pl--p-~-----~~~~~~~~V~v~td~G~~G~GE~~~~~-~~~~~--~~~~i~~~l~p~LiG~dp~~ 69 (412)
T 4e4u_A 1 MKIVSLETHIVAVPP--P-H-----VGGMYWIFVKLKTDDGIEGVGEIYSAT-FGPKA--MAPIIDDVFERHLLNRDPHH 69 (412)
T ss_dssp CCEEEEEEEEEECCT--T-C-----TTCSEEEEEEEEETTSCEEEEEECCCS-SCHHH--HHHHHHHHHHHHTTTSCTTC
T ss_pred CEEEEEEEEEEccCC--C-c-----cCCCceEEEEEEECCCCEEEEeecCCC-CCHHH--HHHHHHHHhHHHhCCCChhH
Confidence 799999999999998 4 1 234678999999999999999996432 23222 2222444 679999999999
Q ss_pred HHHHHHHHHHHC---CCC-hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeC---------CCCHHHHH
Q 013681 144 LNFALDEIARIL---PGS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP---------AVSPAEAS 209 (438)
Q Consensus 144 ~~~~~~~l~~~~---~g~-~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~---------~~~~~~~~ 209 (438)
++.+|+.|++.. .+. ..+++++|||||||||+||..|+|||+||||. ++++|+|.+++ ..+++++.
T Consensus 70 ~e~~~~~l~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~~~~~~~~~~~e~~~ 149 (412)
T 4e4u_A 70 VERLFRQAYSSGFTQRPDLTMMGVVSGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKNAKGEYDYDDPDLAA 149 (412)
T ss_dssp HHHHHHHHHHTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCCCSSEEEEEECCCBCTTSCBCSSCHHHHH
T ss_pred HHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCcCCeeEEEEeccCCcccccccCCCHHHHH
Confidence 999999997742 112 24679999999999999999999999999995 78999997653 46899999
Q ss_pred HHHHHHhhcCCcEEEEecCCC-------------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 013681 210 ELASKYCKLGFSTLKLNVGRN-------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG~d-------------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (438)
+++++++++||++||+|+|.+ +++|++++++||+ .++++.|+||+|++|++++|++++++|+++++
T Consensus 150 ~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i 229 (412)
T 4e4u_A 150 ECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDP 229 (412)
T ss_dssp HHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC
Confidence 999999999999999999854 7899999999999 58999999999999999999999999999997
Q ss_pred CCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcC
Q 013681 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSG 354 (438)
Q Consensus 276 ~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~g 354 (438)
.|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|
T Consensus 230 --~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~kia~~A~~~g 303 (412)
T 4e4u_A 230 --LWFEEPVPPGQEEAIAQVAK----HTSIPIATGERLTTKYEFHKLLQAGGASILQLNVARVGGLLEAKKIATLAEVHY 303 (412)
T ss_dssp --SEEECCSCSSCHHHHHHHHH----TCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTSHHHHHHHHHHHHHTT
T ss_pred --cEEECCCChhhHHHHHHHHh----hCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcC
Confidence 59999999999999999986 68999999999999999999999999999999999997 999999999999999
Q ss_pred CeEEEccCCchhHHHHHHHHHHhhcCCcceeec-CCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhc-ccc
Q 013681 355 LHLMIDGMIETRLATGFALHLAAGLGCIKYVNL-NTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCT-QVD 432 (438)
Q Consensus 355 i~~~~~s~~es~ig~~a~~hla~al~~~~~~e~-~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~-~~~ 432 (438)
+++++|++ +|+|+++|++|++++++|..+.|. +.+..+.++++.+++.++||++.+|++||||+++|++++++| .+.
T Consensus 304 i~v~~h~~-~s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~~~~~ 382 (412)
T 4e4u_A 304 AQIAPHLY-NGPVGAAASIQLATCTPNFLIQESIMTWGGFHAEVVKTPIRWEDGYIIPSNEPGLGIELDMDVVKRHTPYT 382 (412)
T ss_dssp CEECCCCC-SCHHHHHHHHHHHHTCTTBCCEEESTTSCHHHHHTBSSCCEEETTEEECCCSSBTSCCBCHHHHHHTCCCC
T ss_pred CEEEecCC-CcHHHHHHHHHHHHhCCCceeeeecCccchhhHhhccCCCeeECCEEECCCCCCCCccCCHHHHHhccCcc
Confidence 99999985 799999999999999999988873 333334566777888999999999999999999999999999 654
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-67 Score=542.19 Aligned_cols=356 Identities=18% Similarity=0.270 Sum_probs=304.2
Q ss_pred eeEEEEEEEEEEeeccCCcccCCee-------------------EeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSS-------------------VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA 125 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~-------------------~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~ 125 (438)
.||++|+++.+.+|+.+|+..+... .....+++|||+||+|++||||+.+.. +++ ..
T Consensus 26 ~~I~~i~~~~v~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~r~VlVri~td~G~~G~GE~~~~~--~~~--~~ 101 (412)
T 4h1z_A 26 DRVKKIESFTLTLPRETPYLGKPRPGEEPNGRGYLVRKANRTVYPTFDRSVLVRIETENGAVGWGETYGLV--APR--AT 101 (412)
T ss_dssp CCEEEEEEEEEECC------------CCCCTTSEEECTTTCCEEESSCEEEEEEEEETTCCEEEEEEECSS--CHH--HH
T ss_pred ceeeEEEEEEEecccCCccccccccccccccccceeeccCcccCCCCCCcEEEEEEECCCCEEEEecCCCC--CHH--HH
Confidence 4999999999999999998643221 122456999999999999999997542 121 12
Q ss_pred HHHHHH-HhhHhcCCCCCCHHHHHHHHHHHCC-----CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeee
Q 013681 126 LVKVRE-ACQFLRQSPPTTLNFALDEIARILP-----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAI 198 (438)
Q Consensus 126 ~~~~~~-i~~~l~g~~~~~~~~~~~~l~~~~~-----g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~ 198 (438)
...+++ +.|.|+|++|.+++.+|+.|++... +....+|++|||+||||++||..|+|||+||||. ++++|+|.
T Consensus 102 ~~~i~~~lap~liG~dp~~~~~i~~~l~~~~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~~~~v~~y~ 181 (412)
T 4h1z_A 102 MEIIDDLLADFTIGRDPFDAAAIHDDLYDLMRVRGYTGGFYVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYI 181 (412)
T ss_dssp HHHHHHTHHHHHTTSCGGGHHHHHHHHHTTTGGGTCCSHHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCCCSEEEEEE
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHcCCCHHHhcCCCCCceEEEEe
Confidence 222333 7899999999999999999986431 2234678999999999999999999999999998 57899998
Q ss_pred ee-CCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 199 TI-PAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 199 ~i-~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
+. +.++++++.+.+++++++||+.+|+|+|.+.+.|+++++++|+ ++|+++|+||||++|++++|++++++|+++++
T Consensus 182 s~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l- 260 (412)
T 4h1z_A 182 SGLPEDTRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILRERLGPAVRIACDMHWAHTASEAVALIKAMEPHGL- 260 (412)
T ss_dssp CCCCCSSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCHHHHHHHHHHHHCSSSEEEEECCSCCCHHHHHHHHHHHGGGCE-
T ss_pred ccCCCCcHHHHHHHHHHHHhcCcceeccccccchhhHHHHHHHHHhccCCeEEEEeccccCCCHHHHHHHHHhhccccc-
Confidence 74 4567888999999999999999999999888889999999999 58999999999999999999999999999997
Q ss_pred CceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCC
Q 013681 277 PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGL 355 (438)
Q Consensus 277 ~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi 355 (438)
.|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|+++ | ++++++++++|+++|+
T Consensus 261 -~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~-GGit~~~kia~~A~~~gi 334 (412)
T 4h1z_A 261 -WFAEAPVRTEDIDGLARVAA----SVSTAIAVGEEWRTVHDMVPRVARRALAIVQPEMGH-KGITQFMRIGAYAHVHHI 334 (412)
T ss_dssp -EEEECCSCTTCHHHHHHHHH----HCSSEEEECTTCCSHHHHHHHHHTTCCSEECCCHHH-HHHHHHHHHHHHHHHTTC
T ss_pred -ceecCCCCccchHHHHHHHh----hcCCccccCCcccchHhHHHHHHcCCCCEEEecCCC-CChHHHHHHHHHHHHCCC
Confidence 59999999999999999986 689999999999999999999999999999999976 6 9999999999999999
Q ss_pred eEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCc-ccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 356 HLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 356 ~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl-~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
++++|+++|++|+++|++|++++++|..+.|++.+. ...++++.+++.++||++.+|++||||||+|+|++++|+.
T Consensus 335 ~v~~h~~~~~~i~~aa~lhl~aa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGve~d~eal~~~rk 411 (412)
T 4h1z_A 335 KVIPHATIGAGIFLAASLQASAALANVDCHEFQHSIFEPNRRLLVGDMDCLNGEYVVPTGPGLGVEPSKEAQGLLKK 411 (412)
T ss_dssp EECCCCCSSCSHHHHHHHHHHHHCTTBCCEEECHHHHTGGGGGEEECCEEETTEEECCCSSBTSEEECHHHHHHCEE
T ss_pred cEEecCCcchHHHHHHHHHHHHhCCCCCeeeccccccccchhhccCCCeEECCEEECCCCCCCCeEECHHHHHHhcc
Confidence 999999999999999999999999999988876543 3345566778889999999999999999999999998863
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-67 Score=542.48 Aligned_cols=350 Identities=15% Similarity=0.245 Sum_probs=310.5
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~~ 143 (438)
|||++|+++.++.|++ .+ ..++.++|+|+||+|++|||||++.+.. .+. ....+++ +.|.|+|+++.+
T Consensus 2 MkIt~i~~~~~~~p~~---~~-----~~~~~v~V~v~Td~G~~G~GE~~~~~~~-~~~--v~~~i~~~l~p~LiG~dp~~ 70 (433)
T 3rcy_A 2 VKLRDLDIIVTAPPAP---GW-----GGRYWILVKLTTDDGITGWGECYAASVG-PEA--MRAVIEDVFARHMEGENPEN 70 (433)
T ss_dssp CCEEEEEEEEECCCTT---CT-----TCSCEEEEEEEETTSCEEEEEECCCSSC-HHH--HHHHHHHHHHHHTTTSCTTC
T ss_pred CeEEEEEEEEEcCCCC---cc-----CCceEEEEEEEECCCCEEEEeccCCCCC-HHH--HHHHHHHHHHHHhCCCCccc
Confidence 8999999999999874 11 2368899999999999999998865432 221 2223454 789999999999
Q ss_pred HHHHHHHHHHHC--C-CC-hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeee---C-------CCCHHHH
Q 013681 144 LNFALDEIARIL--P-GS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI---P-------AVSPAEA 208 (438)
Q Consensus 144 ~~~~~~~l~~~~--~-g~-~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i---~-------~~~~~~~ 208 (438)
++.+|+.|++.. . +. ..++|++|||||||||+||..|+|||+||||. ++++|+|.++ + ..+++++
T Consensus 71 ie~~~~~l~~~~~~~~g~~~~~~A~saID~ALWDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~g~~~~~~~~~~e~~ 150 (433)
T 3rcy_A 71 IELMFRRVYSSGFTQRPDLTAIGAFSGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHHPITPFWTSADMA 150 (433)
T ss_dssp HHHHHHHHHHTTTCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSCSSEEEEEECCCCTTSCHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCeEEEEEEEcccCCcccccCCCCHHHH
Confidence 999999998742 2 22 35789999999999999999999999999995 7899999875 2 2689999
Q ss_pred HHHHHHHhhcCCcEEEEecCC-------------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 013681 209 SELASKYCKLGFSTLKLNVGR-------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~-------------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (438)
.+++++++++||++||+|+|. +++.|++++++||+ +++++.|++|+|++|++++|++++++|++++
T Consensus 151 ~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~ 230 (433)
T 3rcy_A 151 AESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYS 230 (433)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcC
Confidence 999999999999999999974 36789999999999 5899999999999999999999999999999
Q ss_pred CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHc
Q 013681 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKS 353 (438)
Q Consensus 275 l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~ 353 (438)
+ .|||||++++|++++++|++ ++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 231 i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~kia~lA~~~ 304 (433)
T 3rcy_A 231 P--LWYEEPVPPDNVGAMAQVAR----AVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIWEMKKVAAMAEVY 304 (433)
T ss_dssp C--SEEECCSCTTCHHHHHHHHH----HSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHTT
T ss_pred C--CEEECCCChhhHHHHHHHHh----ccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHc
Confidence 7 59999999999999999986 68999999999999999999999999999999999997 99999999999999
Q ss_pred CCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 354 GLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 354 gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
|+++++|++ +|+|+++|++|++++++|..++|++.+ .+.++++.+++.++||++.+|++||||+++|++++++|+++.
T Consensus 305 gv~~~~h~~-~s~i~~aa~lhlaaa~pn~~~~E~~~~-~~~~~~~~~~~~~~~G~i~~p~~PGLGve~d~~~l~~~~~~~ 382 (433)
T 3rcy_A 305 NAQMAPHLY-AGPVEWAANVHFAASIPNILMCESIET-PFHDALIKGSIRVEGGYITPPEAPGLGIEVDEALARANPYHG 382 (433)
T ss_dssp TCEECCCCS-SCHHHHHHHHHHHHTCTTBCCEECCCC-HHHHHHTTTCSCEETTEECCCCSSBTCCCCCHHHHHTSBCCC
T ss_pred CCEEEecCC-CCHHHHHHHHHHHHHhccCcEEEeccc-hhhhhhcCCCceEECCEEEcCCCCcCCcccCHHHHHhccCCC
Confidence 999999984 999999999999999999988888775 444567778889999999999999999999999999998764
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-67 Score=535.25 Aligned_cols=352 Identities=15% Similarity=0.173 Sum_probs=308.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~~ 143 (438)
|||++|+++.+++|+ | . +..++.++|+|+|++|++||||+.... ++++. ....+++ +.|.|+|+++.+
T Consensus 2 MkIt~i~~~~v~~pl--p-~-----~~~~~~~~V~v~td~G~~G~GE~~~~~-~~~~~--~~~~i~~~l~p~liG~dp~~ 70 (404)
T 4e5t_A 2 MRLSDIETFVVGNPP--P-R-----HGGRYFIFVKLVTACGITGYGEIYNAT-FGPDL--VAKMAEDVFARQFAGEDPHH 70 (404)
T ss_dssp CCEEEEEEEEEECCT--T-C-----TTCSEEEEEEEEETTSCEEEEEECCCS-SCHHH--HHHHHHHHHHHHTTTSCTTC
T ss_pred CEEEEEEEEEeccCC--c-c-----cCCCceEEEEEEECCCCEEEEeeccCC-CchHH--HHHHHHHHHHHHhcCCChhH
Confidence 899999999999998 4 1 224678999999999999999996432 22222 1222444 679999999999
Q ss_pred HHHHHHHHHHHC---CCC-hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeC---------------CC
Q 013681 144 LNFALDEIARIL---PGS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP---------------AV 203 (438)
Q Consensus 144 ~~~~~~~l~~~~---~g~-~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~---------------~~ 203 (438)
++.+|+.|++.. .+. ...++++|||+|||||+||..|+|||+||||. ++++|+|.+++ ..
T Consensus 71 ~e~~~~~~~~~~~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~~~~p~~d~~~~~~ 150 (404)
T 4e5t_A 71 IEKLWHKTYGAGYTQRPDVTVMGVLSGLEMACWDIIGKAAGKPAYELLGGKVHERLRSYTYLYPTDGDVYPDPDKPNVYN 150 (404)
T ss_dssp HHHHHHHHHTTTSCCSCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCCCSSEEEEEECCC----------CCCTTT
T ss_pred HHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHcCCCCcCeEEEEEEeccccccccccccccccCC
Confidence 999999997642 111 23679999999999999999999999999995 78999997653 46
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCC-------------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRN-------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGK 269 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d-------------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~ 269 (438)
+++++.+++++++++||++||+|+|.+ +++|++++++||+ .++++.|+||+|++|++++|++++++
T Consensus 151 ~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~ 230 (404)
T 4e5t_A 151 DADMAAEAAAKAVDQGFTAVKFDPAGAYTIYDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARR 230 (404)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEECCSCCCBTTCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEeeCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHH
Confidence 899999999999999999999999854 7899999999999 57999999999999999999999999
Q ss_pred hhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHH
Q 013681 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (438)
Q Consensus 270 L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~ 348 (438)
|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| +++++++++
T Consensus 231 l~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~ 304 (404)
T 4e5t_A 231 LEAYDP--LWFEEPIPPEKPEDMAEVAR----YTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVGGLLEAKKIAA 304 (404)
T ss_dssp HGGGCC--SEEECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTSSCHHHHHHHHH
T ss_pred HhhcCC--cEEECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHH
Confidence 999997 59999999999999999986 68999999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeec-CCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhh
Q 013681 349 ATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL-NTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427 (438)
Q Consensus 349 ~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~-~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~ 427 (438)
+|+++|+++++|++ +|+|+++|++|++++++|..++|. +....+.++++.+++.++||++.+|++||||+++|+++++
T Consensus 305 ~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~~~ 383 (404)
T 4e5t_A 305 MAECHSAQIAPHLY-CGPLVALANIQLATCSPNFLVLESIRTFDGFFAELLTTPIRWENGYIIPSQEPGLGHDLNEDVAR 383 (404)
T ss_dssp HHHHTTCEECCCCS-SCHHHHHHHHHHHHTCTTBCCEEESTTSCTHHHHTBSSCCEEETTEEECCCSSBTSSCBCHHHHH
T ss_pred HHHHcCCEEeecCC-CcHHHHHHHHHHHHhCCCceeEEecccccchhHHhcCCCCeeeCCEEECCCCCCCCcCCCHHHHH
Confidence 99999999999986 799999999999999999988874 3323344567778889999999999999999999999999
Q ss_pred hcccccc
Q 013681 428 CTQVDCC 434 (438)
Q Consensus 428 ~~~~~~~ 434 (438)
+|.++.-
T Consensus 384 ~~~~~~~ 390 (404)
T 4e5t_A 384 ANPYTGS 390 (404)
T ss_dssp TSBCCCC
T ss_pred hCcCCCC
Confidence 9987654
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-67 Score=537.64 Aligned_cols=358 Identities=15% Similarity=0.172 Sum_probs=306.4
Q ss_pred ccccccccccCCcceeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH
Q 013681 50 ERTSLGFKNLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV 129 (438)
Q Consensus 50 ~~ts~~~~~~~~~~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~ 129 (438)
+|..-|.-+. .--.|||++|+.+.+. | .++.++|+|+|++|++||||+.+.. ..+ .....+
T Consensus 9 ~~~~~~~~~~-~~~~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~Gi~G~GE~~~~~--~~~--~~~~~i 69 (424)
T 3v3w_A 9 SGVDLGTENL-YFQSMKIVDAKVIVTC-----P---------GRNFVTLKIVTDQGIYGIGDATLNG--REK--SVVSYL 69 (424)
T ss_dssp ---------------CCEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT--CHH--HHHHHH
T ss_pred cccccCcccc-CCCCCEEEEEEEEEEc-----C---------CCCEEEEEEEECCCCEEEEeccCCC--ChH--HHHHHH
Confidence 4444443332 2335999999987542 1 1367999999999999999986532 111 222335
Q ss_pred HH-HhhHhcCCCCCCHHHHHHHHHHHC--C-CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCC
Q 013681 130 RE-ACQFLRQSPPTTLNFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVS 204 (438)
Q Consensus 130 ~~-i~~~l~g~~~~~~~~~~~~l~~~~--~-g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~ 204 (438)
++ +.|.|+|+++.+++.+|+.|++.. . +...+++++|||||||||+||..|+|||+||||. ++++|+|.+++..+
T Consensus 70 ~~~l~p~LiG~dp~~ie~i~~~~~~~~~~~~g~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~ 149 (424)
T 3v3w_A 70 EDYLIPVLIGRDPQQIEDIWQFFYRGAYWRRGPVGMTALAAIDVALWDIKAKLANMPLYQLLGGKSRERILSYTHANGKD 149 (424)
T ss_dssp HHTHHHHHTTSCTTCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHTCCSCSSEEEEEEEEESS
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCcCCCceeEEEeCCCCC
Confidence 55 899999999999999999998753 2 2234679999999999999999999999999997 78999999888889
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecCC---------------------------------CchHHHHHHHHHHh-hCCCcEE
Q 013681 205 PAEASELASKYCKLGFSTLKLNVGR---------------------------------NITADFDVLQAIHA-VHPHCSF 250 (438)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKlKvG~---------------------------------d~~~di~~l~aiR~-~~~~~~L 250 (438)
++++.+++++++++||++||+|+|. +++.|++++++||+ .++++.|
T Consensus 150 ~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~avG~d~~l 229 (424)
T 3v3w_A 150 LDSTLEAVRKAKDKGYKAIRVQCGIPGIAKTYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIPDVFAAVRKEFGPDIHL 229 (424)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCTTCSCCTTCC-----CCSCCBSSCCEEEECHHHHHHHHHHHHHHHHHHHCSSSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCcE
Confidence 9999999999999999999999984 15689999999999 5799999
Q ss_pred EEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 251 ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 251 ~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
+||+|++|++++|++++++|+++++ .|||||++++|++++++|++ ++++||++||++.++.+++++++.+++|+
T Consensus 230 ~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~ga~d~ 303 (424)
T 3v3w_A 230 LHDVHHRLTPIEAARLGKALEPYHL--FWMEDAVPAENQESFKLIRQ----HTTTPLAVGEVFNSIHDCRELIQNQWIDY 303 (424)
T ss_dssp EEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCCSSTTHHHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSE
T ss_pred EEeCCCCCCHHHHHHHHHHHHhcCC--CEEECCCChHhHHHHHHHHh----hCCCCEEEccCcCCHHHHHHHHHcCCCCe
Confidence 9999999999999999999999997 49999999999999999986 68999999999999999999999999999
Q ss_pred EEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcE
Q 013681 331 VNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAI 408 (438)
Q Consensus 331 i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~ 408 (438)
+|+|++++| ++++++++++|+++|+++++|++. +|+||++|++|++++++|+.+.|++.+....++++.+++.++||+
T Consensus 304 v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~ 383 (424)
T 3v3w_A 304 IRTTIVHAGGISQMRRIADFASLFHVRTGFHGATDLSPVCMGAALHFDYWVPNFGIQEHMAHSEQMNAVFPHAYTFNDGY 383 (424)
T ss_dssp ECCCTTTTTHHHHHHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCBCCEEETTE
T ss_pred EeecchhcCCHHHHHHHHHHHHHcCCEEEecCCCcccHHHHHHHHHHHHhCCCcceEeecCcchhhHhhcCCCceeeCCE
Confidence 999999997 999999999999999999999987 799999999999999999988888765545566777889999999
Q ss_pred EecCCCCCccceeChhhhhhcccc
Q 013681 409 YNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 409 ~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
+.+|++||||+++|++++++|++.
T Consensus 384 i~~p~~PGlGveld~~~l~~~~~~ 407 (424)
T 3v3w_A 384 FTPGEKPGHGVDIDEKLAAQYPYK 407 (424)
T ss_dssp EECCSSSBTSBCCCHHHHTTSCCC
T ss_pred EECCCCCCCCcccCHHHHHhccCC
Confidence 999999999999999999999875
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-67 Score=534.92 Aligned_cols=346 Identities=13% Similarity=0.153 Sum_probs=306.9
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~ 142 (438)
.|||++++.+.+... ..+.++|+|+|++|++||||+.+.. +.+ .....+++ +.|.|+|+++.
T Consensus 5 ~mkIt~v~~~~~~~~-------------~~~~~~V~v~td~G~~G~GE~~~~~--~~~--~~~~~i~~~l~p~liG~d~~ 67 (401)
T 3sbf_A 5 ETIISDIHCIITKPD-------------RHNLITVVVETNEGVTGFGCATFQQ--RPL--AVKTMVDEYLKPILIGKNAN 67 (401)
T ss_dssp CCBEEEEEEEEECSS-------------SSCEEEEEEEETTSCEEEEECCCTT--SHH--HHHHHHHHTHHHHHTTSBTT
T ss_pred CeEEEEEEEEEEcCC-------------CceEEEEEEEeCCCCEEEEccccCC--CHH--HHHHHHHHHHHHHHcCCChh
Confidence 499999999765310 1267999999999999999987542 222 12233555 89999999999
Q ss_pred CHHHHHHHHHHHC--C-CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhc
Q 013681 143 TLNFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL 218 (438)
Q Consensus 143 ~~~~~~~~l~~~~--~-g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (438)
+++.+|+.|++.. . +....++++|||||||||+||..|+|||+||||. ++++|+|.+++..+++++.+++++++++
T Consensus 68 ~~e~~~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~ 147 (401)
T 3sbf_A 68 NIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEK 147 (401)
T ss_dssp CHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSSSSEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhHhHhCCcHHHHhCCCcCCeeeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999998753 2 2234679999999999999999999999999997 7899999988888999999999999999
Q ss_pred CCcEEEEecCCC------------------------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhC
Q 013681 219 GFSTLKLNVGRN------------------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDM 273 (438)
Q Consensus 219 Gf~~iKlKvG~d------------------------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~ 273 (438)
||++||+|+|.+ ++.|++++++||+ .++++.|+||+|++|++++|++++++|+++
T Consensus 148 G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~ 227 (401)
T 3sbf_A 148 GYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQY 227 (401)
T ss_dssp TCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred CCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999853 5689999999999 579999999999999999999999999999
Q ss_pred CCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHH
Q 013681 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRK 352 (438)
Q Consensus 274 ~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~ 352 (438)
++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|++
T Consensus 228 ~i--~~iEqP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~kia~~A~~ 301 (401)
T 3sbf_A 228 KP--YFIEDILPPNQTEWLDNIRS----QSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQN 301 (401)
T ss_dssp CC--SCEECSSCTTCGGGHHHHHT----TCCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHH
T ss_pred CC--CEEECCCChhHHHHHHHHHh----hCCCCEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 97 49999999999999999985 68999999999999999999999999999999999997 9999999999999
Q ss_pred cCCeEEEccCC-chhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 353 SGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 353 ~gi~~~~~s~~-es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
+|+++++|++. +|+||++|++|++++++|+.+.|++.+....++++.+++.++||++.+|++||||+++|++++++|++
T Consensus 302 ~gi~~~~h~~~~~s~i~~aA~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~~~ 381 (401)
T 3sbf_A 302 FGVRIAWHCAPDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYASEIAGIGVEIDREAAAEFPV 381 (401)
T ss_dssp HTCEECCCCCTTSCHHHHHHHHHHHHHSTTBCCEECCCCCHHHHHHSTTCCCCBTTEECCCCSSBSSCCCCHHHHHTSCC
T ss_pred cCCEEEecCCcccchHHHHHHHHHHHhCCCcceeeccCCchhhHhhcCCCCeeeCCEEECCCCCCCCceECHHHHHhccc
Confidence 99999999986 79999999999999999998888876544455677788889999999999999999999999999997
Q ss_pred c
Q 013681 432 D 432 (438)
Q Consensus 432 ~ 432 (438)
.
T Consensus 382 ~ 382 (401)
T 3sbf_A 382 M 382 (401)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-67 Score=536.52 Aligned_cols=349 Identities=18% Similarity=0.205 Sum_probs=305.0
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH---------Hhh
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE---------ACQ 134 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~---------i~~ 134 (438)
.|||++|+++.+++|+ +.+.++.++|+|+|++|++||||+.+.+ ..... .+.. +.|
T Consensus 4 ~mkI~~i~~~~v~~p~---------~~~~~~~~~V~v~td~G~~G~GE~~~~~----~~~~~--~~~~~~~~~~~~~l~p 68 (394)
T 3mqt_A 4 GANIVSVEFIPVNVAA---------TNWSENTVIVKVTDENGVYGLGEADGPP----ECMKA--FSEIENEHKWLNNIKE 68 (394)
T ss_dssp -CCEEEEEEEEEECC--------------CEEEEEEEEETTSCEEEEEECSCH----HHHHH--HHTCCCCBTTBCCGGG
T ss_pred CCeEeEEEEEEEecCC---------CCCCccEEEEEEEECCCCEEEEEECCcH----HHHHH--HHhcccchhhHHHHHH
Confidence 4999999999999997 2345789999999999999999997532 11111 1222 789
Q ss_pred HhcCCCCCCHHHHHHHHHHHC--CC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeC--C-C--C
Q 013681 135 FLRQSPPTTLNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--A-V--S 204 (438)
Q Consensus 135 ~l~g~~~~~~~~~~~~l~~~~--~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--~-~--~ 204 (438)
.|+|+++.+++.+|+.|++.. .+ ...+++++|||||||||+||..|+|||+||||. ++++|+|.+++ + . +
T Consensus 69 ~liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~~~~~ 148 (394)
T 3mqt_A 69 AVIGRDPLEFRANYNRMYDTTKWIGMRGLGLFAISGIDMALYDLAGKQLGVPAYKLMGGAQKAQLTPYFTLYPSVAADAT 148 (394)
T ss_dssp GTTTSCTTCHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCSSSBCCEEECCCCCCTTCC
T ss_pred HhCCCChhHHHHHHHHHHHhhhhhCCccHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCCCCCeEEEEEEecCCCCCCcc
Confidence 999999999999999998753 22 234689999999999999999999999999997 68999999876 3 2 3
Q ss_pred HH----HHHHHHHHHhhcCCcEEEE-ecC---CCchHHHHHHHHHHh-hCCCcEEEEeCCCCC-CHHHHHHHHHHhhhCC
Q 013681 205 PA----EASELASKYCKLGFSTLKL-NVG---RNITADFDVLQAIHA-VHPHCSFILDANEGY-TSEEAVEVLGKLNDMG 274 (438)
Q Consensus 205 ~~----~~~~~~~~~~~~Gf~~iKl-KvG---~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~-s~~~A~~~l~~L~~~~ 274 (438)
++ ++.+++++++++||++||+ |+| .++++|++++++||+ .++++.|+||+|++| ++++|++++++|++++
T Consensus 149 ~~~~i~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~ 228 (394)
T 3mqt_A 149 LSEIVEAYKPLIAKAKERGAKAVKVCIIPNDKVSDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDID 228 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGC
T ss_pred hhhhHHHHHHHHHHHHHcCCCEEEecccCCCccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcC
Confidence 44 5667888999999999999 999 578999999999999 589999999999999 9999999999999999
Q ss_pred CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHc
Q 013681 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKS 353 (438)
Q Consensus 275 l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~ 353 (438)
+ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 229 i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~ 302 (394)
T 3mqt_A 229 L--YFIEACLQHDDLIGHQKLAA----AINTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRCGGVTELLRIMDICEHH 302 (394)
T ss_dssp C--SEEESCSCTTCHHHHHHHHH----HSSSEEEECTTCCHHHHHHHHHHHHCCSEECCCTTTSSCHHHHHHHHHHHHHH
T ss_pred C--eEEECCCCcccHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHc
Confidence 7 59999999999999999986 68999999999999999999999999999999999997 99999999999999
Q ss_pred CCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCc----ccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhc
Q 013681 354 GLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPF----LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCT 429 (438)
Q Consensus 354 gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl----~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~ 429 (438)
|+++++|++ ||+|+++|++|++++++|..++|++.+. .+.++++.+++.++||++.+|++||||+++|++++++|
T Consensus 303 gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~~l~~~ 381 (394)
T 3mqt_A 303 NAQLMPHNW-KTGITAAAARHFGIVCHISEYVEYLHPDFWNGTLTQQLTLNEPKIIDGAIEVSDKPGLGIELNIEFVEQV 381 (394)
T ss_dssp TCEECCCCC-SCHHHHHHHHHHHHHCTTCSCCEECCTTTCCCHHHHHTBSSCCCCBTTBBCCCCCSBTCCCBCHHHHHHH
T ss_pred CCEEeccCC-CchHHHHHHHHHHHhCCCCceEEecCcccccchhHHhhccCCCcccCCEEECCCCCCCCCCcCHHHHHhc
Confidence 999999997 9999999999999999999999887762 23456677788899999999999999999999999999
Q ss_pred ccccc
Q 013681 430 QVDCC 434 (438)
Q Consensus 430 ~~~~~ 434 (438)
+++.-
T Consensus 382 ~~~~~ 386 (394)
T 3mqt_A 382 TGHKF 386 (394)
T ss_dssp HCSCC
T ss_pred ccccc
Confidence 98765
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-66 Score=534.74 Aligned_cols=347 Identities=15% Similarity=0.170 Sum_probs=307.8
Q ss_pred cceeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCC
Q 013681 62 TFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSP 140 (438)
Q Consensus 62 ~~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~ 140 (438)
...|||++|+.+.+. | .++.++|+|+|++|++||||+.+.. ..+ .....+++ +.|.|+|++
T Consensus 14 ~~~mkIt~v~~~~~~-----~---------~~~~~~V~v~td~G~~G~GE~~~~~--~~~--~~~~~i~~~l~p~LiG~d 75 (418)
T 3r4e_A 14 GSHMKITAARVIITC-----P---------GRNFVTLKIETDQGVYGIGDATLNG--REL--SVVAYLQEHVAPCLIGMD 75 (418)
T ss_dssp TCCCCEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT--CHH--HHHHHHHHTHHHHHTTSC
T ss_pred CCCCEEEEEEEEEEc-----C---------CCcEEEEEEEECCCCEEEEeccCCC--ChH--HHHHHHHHHHHHHhcCCC
Confidence 345999999987542 1 1367999999999999999986532 111 22233555 899999999
Q ss_pred CCCHHHHHHHHHHHC--C-CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHh
Q 013681 141 PTTLNFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYC 216 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~--~-g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~ 216 (438)
+.+++.+|+.|++.. . +...+++++|||||||||+||..|+|||+||||. ++++|+|.+++..+++++.+++++++
T Consensus 76 p~~ie~l~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~ 155 (418)
T 3r4e_A 76 PRRIEDIWQYVYRGAYWRRGPVTMRAIAAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDIAETVEAVGHYI 155 (418)
T ss_dssp TTCHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSCSSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCccCCeeeEEEeCCCCCHHHHHHHHHHHH
Confidence 999999999998753 2 2234679999999999999999999999999997 78999999888889999999999999
Q ss_pred hcCCcEEEEecCC---------------------------------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHH
Q 013681 217 KLGFSTLKLNVGR---------------------------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEE 262 (438)
Q Consensus 217 ~~Gf~~iKlKvG~---------------------------------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~ 262 (438)
++||++||+|+|. ++++|++++++||+ .++++.|+||+|++|++++
T Consensus 156 ~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~ 235 (418)
T 3r4e_A 156 DMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLFEELRKTYGFDHHLLHDGHHRYTPQE 235 (418)
T ss_dssp HTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHH
T ss_pred HcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHH
Confidence 9999999999984 14679999999999 5799999999999999999
Q ss_pred HHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HH
Q 013681 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~ 341 (438)
|++++++|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++
T Consensus 236 A~~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~~GGit 309 (418)
T 3r4e_A 236 AANLGKMLEPYQL--FWLEDCTPAENQEAFRLVRQ----HTVTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAGGLT 309 (418)
T ss_dssp HHHHHHHHGGGCC--SEEESCSCCSSGGGGHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHHHhhCC--CEEECCCCccCHHHHHHHHh----cCCCCEEEcCCcCCHHHHHHHHHcCCCCeEecCccccCCHH
Confidence 9999999999997 49999999999999999986 68999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccce
Q 013681 342 GTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (438)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 420 (438)
++++++++|+++|+++++|++. +|+||++|++|++++++|+.+.|++.+.....+++.+++.++||++.+|++||||++
T Consensus 310 ~~~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve 389 (418)
T 3r4e_A 310 HLRRIADLASLYQVRTGCHGPTDLSPVTMGCALHFDTWVPNFGIQEYMRHTEETDAVFPHDYWFEKGELFVGETPGHGVD 389 (418)
T ss_dssp HHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCBSEEEETTEEEECCCSBSSBC
T ss_pred HHHHHHHHHHHcCCEEeecCCCCccHHHHHHHHHHHHhCCCcceEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCCc
Confidence 9999999999999999999997 799999999999999999988888765444566778889999999999999999999
Q ss_pred eChhhhhhcccc
Q 013681 421 LKWTIVSCTQVD 432 (438)
Q Consensus 421 ld~~~l~~~~~~ 432 (438)
+|++++++|++.
T Consensus 390 ld~~~l~~~~~~ 401 (418)
T 3r4e_A 390 IDEELAAKYPYK 401 (418)
T ss_dssp CCHHHHTTSCCC
T ss_pred cCHHHHHhccCC
Confidence 999999999876
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-67 Score=535.54 Aligned_cols=353 Identities=16% Similarity=0.188 Sum_probs=302.6
Q ss_pred cceeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHH---------HH
Q 013681 62 TFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR---------EA 132 (438)
Q Consensus 62 ~~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~---------~i 132 (438)
...|||++|+++.+++|+ +.+.++.++|+|+|++|++||||+.+.+ ..... .+. .+
T Consensus 7 ~~~mkI~~i~~~~v~~p~---------~~~~~~~~~V~v~td~G~~G~GE~~~~~----~~~~~--~~~~~~~~~~~~~l 71 (394)
T 3mkc_A 7 PAVAPIKSIEFIPVNYQA---------SNWSQNTVVVKVTDENGVYGLGEADGSP----DAILA--YANIETEHKWLTNI 71 (394)
T ss_dssp TTCCCEEEEEEEEEEEC-------------CEEEEEEEEEETTSCEEEEEECSCH----HHHHH--HHTCCCCBTTBCCT
T ss_pred CCCCeEEEEEEEEEecCC---------CCCCccEEEEEEEECCCCeEEEEecCcH----HHHHH--HHhcccchhhHHHH
Confidence 345999999999999997 2345789999999999999999997532 11111 122 27
Q ss_pred hhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeC--C-C-
Q 013681 133 CQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--A-V- 203 (438)
Q Consensus 133 ~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--~-~- 203 (438)
.|.|+|+++.+++.+|+.|++.. .+...+++++|||+||||++||..|+|||+||||. ++++|+|.+++ . .
T Consensus 72 ~p~liG~dp~~~e~~~~~l~~~~~~~g~~g~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~~~ 151 (394)
T 3mkc_A 72 TEKAIGRLPIEINAIWDAMYDATQWQGMRGLGMFALSGIDMALYDLAGKQLGVPAYQLLGGTNKDKVHPYLTLYPAIPVD 151 (394)
T ss_dssp TTTTTTSCTTCHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSEECCEEECCCSCC-C
T ss_pred HHHhCCCChhHHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCcCCeeEEEEecCCcCCCC
Confidence 89999999999999999998742 12334689999999999999999999999999997 68999998876 3 2
Q ss_pred -CHH----HHHHHHHHHhhcCCcEEEE-ecC---CCchHHHHHHHHHHh-hCCCcEEEEeCCCCC-CHHHHHHHHHHhhh
Q 013681 204 -SPA----EASELASKYCKLGFSTLKL-NVG---RNITADFDVLQAIHA-VHPHCSFILDANEGY-TSEEAVEVLGKLND 272 (438)
Q Consensus 204 -~~~----~~~~~~~~~~~~Gf~~iKl-KvG---~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~-s~~~A~~~l~~L~~ 272 (438)
+++ ++.+++++++++||++||+ |+| .++++|++++++||+ .++++.|+||+|++| ++++|++++++|++
T Consensus 152 ~~~~~~~~~~~~~a~~~~~~G~~~~K~~k~g~~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~ 231 (394)
T 3mkc_A 152 ASLDVAIKGYAPLLEKAKAHNIRAVKVCVPIKADWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIED 231 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEEEEECCTTCCCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGG
T ss_pred cchhhhHHHHHHHHHHHHHcCCCEEEeCccCCCccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 344 6677889999999999999 999 578999999999999 579999999999999 99999999999999
Q ss_pred CCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHH
Q 013681 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATR 351 (438)
Q Consensus 273 ~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~ 351 (438)
+++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 232 ~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia~~A~ 305 (394)
T 3mkc_A 232 LEL--YFAEATLQHDDLSGHAKLVE----NTRSRICGAEMSTTRFEAEEWITKGKVHLLQSDYNRCGGLTELRRITEMAT 305 (394)
T ss_dssp GCC--SEEESCSCTTCHHHHHHHHH----HCSSCBEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHH
T ss_pred cCC--eEEECCCCchhHHHHHHHHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHH
Confidence 997 59999999999999999986 68999999999999999999999999999999999997 999999999999
Q ss_pred HcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCc----ccccCCCCCceeeeCcEEecCCCCCccceeChhhhh
Q 013681 352 KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPF----LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427 (438)
Q Consensus 352 ~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl----~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~ 427 (438)
++|+++++|++ ||+|+++|++|++++++|..++|++.+. .+.++++.+++.++||++.+|++||||+++|+++++
T Consensus 306 ~~gi~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~ 384 (394)
T 3mkc_A 306 ANNVQVMPHNW-KTGITSAAAIHYQFAVGNAPYFEYVHPEFCDGELRKYLVTPEAELVDGGFAKPTAPGLGIDLNQEFLA 384 (394)
T ss_dssp HTTCEECCCCC-SCHHHHHHHHHHHHHTCCSSCCEECCGGGCCCHHHHHSEECCCCCBTTBEECCCSSBTCCEECHHHHH
T ss_pred HcCCEEeecCC-CcHHHHHHHHHHHHhCCCceeEEeeccccccchhHHhhccCCCcccCCEEECCCCCCCCceeCHHHHH
Confidence 99999999997 9999999999999999999999887763 233556667788999999999999999999999999
Q ss_pred hcccccccC
Q 013681 428 CTQVDCCHG 436 (438)
Q Consensus 428 ~~~~~~~~~ 436 (438)
+|.=+--||
T Consensus 385 ~~~~~~~~~ 393 (394)
T 3mkc_A 385 SLEGHHHHH 393 (394)
T ss_dssp TC-------
T ss_pred hhhcccccC
Confidence 998655443
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-66 Score=536.75 Aligned_cols=345 Identities=14% Similarity=0.174 Sum_probs=306.4
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~ 142 (438)
.|||++|+.+.+. | .++.++|+|+|++|++||||+.+.. ..+ .....+++ +.|.|+|+++.
T Consensus 23 ~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~G~~G~GE~~~~~--~~~--~~~~~i~~~l~p~LiG~dp~ 84 (425)
T 3vcn_A 23 MLKIIDAKVIVTC-----P---------GRNFVTLKITTEDGITGVGDATLNG--REL--SVVSFLQDHMVPSLIGRDAH 84 (425)
T ss_dssp CCBEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT--CHH--HHHHHHHHTTHHHHTTCBTT
T ss_pred CCEEEEEEEEEEc-----C---------CCcEEEEEEEECCCCEEEEeccCCC--ChH--HHHHHHHHHHHHHhCCCChh
Confidence 4999999987542 1 1367999999999999999986532 111 22233555 88999999999
Q ss_pred CHHHHHHHHHHHC--C-CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhc
Q 013681 143 TLNFALDEIARIL--P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL 218 (438)
Q Consensus 143 ~~~~~~~~l~~~~--~-g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (438)
+++.+|+.|++.. . +...+++++|||||||||+||..|+|||+||||. ++++|+|.+++..+++++.+++++++++
T Consensus 85 ~ie~i~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~ 164 (425)
T 3vcn_A 85 QIEDIWQFFYRGSYWRGGPVAMTALAAVDMALWDIKGKVAGLPVYQLLGGACRTGVTVYGHANGETIEDTIAEAVKYKAM 164 (425)
T ss_dssp CHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSSSSEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCCCCeeeEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999998753 2 2234679999999999999999999999999997 7899999988888999999999999999
Q ss_pred CCcEEEEecCC----------------C-----------------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHH
Q 013681 219 GFSTLKLNVGR----------------N-----------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAV 264 (438)
Q Consensus 219 Gf~~iKlKvG~----------------d-----------------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~ 264 (438)
||++||+|+|. + ++.|++++++||+ .++++.|+||+|++|++++|+
T Consensus 165 Gf~~iKlKvg~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~ 244 (425)
T 3vcn_A 165 GYKAIRLQTGVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLFERAREVLGWDVHLLHDVHHRLTPIEAA 244 (425)
T ss_dssp TCSEEEEEECCTTCSCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHHHHHHHHHCSSSEEEEECTTCCCHHHHH
T ss_pred CCCEEEEeecCccccccccccccccccCcccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 99999999984 0 4678999999999 579999999999999999999
Q ss_pred HHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHH
Q 013681 265 EVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGT 343 (438)
Q Consensus 265 ~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~ 343 (438)
+++++|+++++ .|||||++++|++++++|++ ++++||++||++.++.+++++++.+++|++|+|++++| ++++
T Consensus 245 ~~~~~L~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~ 318 (425)
T 3vcn_A 245 RLGKDLEPYRL--FWLEDSVPAENQAGFRLIRQ----HTTTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAGGITNL 318 (425)
T ss_dssp HHHHHHGGGCC--SEEECCSCCSSTTHHHHHHH----HCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHH
T ss_pred HHHHHHHhcCC--CEEECCCChhhHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCeEecChhhcCCHHHH
Confidence 99999999997 49999999999999999986 68999999999999999999999999999999999997 9999
Q ss_pred HHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeC
Q 013681 344 LQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLK 422 (438)
Q Consensus 344 ~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld 422 (438)
++++++|+++|+++++|++. +|+|+++|++|++++++|+.+.|++.+.....+++.+++.++||++.+|++||||+++|
T Consensus 319 ~~ia~~A~~~gi~~~~h~~~~~s~ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGveld 398 (425)
T 3vcn_A 319 KKIAAFADLHHVKTGCHGATDLSPVTMAAALHFDMSITNFGLQEYMRHTPETDAVFPHAYTFSDGMLHPGDKPGLGVDID 398 (425)
T ss_dssp HHHHHHHGGGTCEECCCCCTTSCHHHHHHHHHHHHTCSCBCCEECCCCCHHHHHHSCBCCEEETTEEECCSSSBTSBCCC
T ss_pred HHHHHHHHHcCCEEeeccCCcccHHHHHHHHHHHHhCCCCceEeecCcchhhhhhcCCCceeeCCEEECCCCCCCCCcCC
Confidence 99999999999999999997 79999999999999999998888876544456677788999999999999999999999
Q ss_pred hhhhhhcccc
Q 013681 423 WTIVSCTQVD 432 (438)
Q Consensus 423 ~~~l~~~~~~ 432 (438)
++++++|++.
T Consensus 399 ~~~l~~~~~~ 408 (425)
T 3vcn_A 399 EDLAAKHPYK 408 (425)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHhCcCC
Confidence 9999999875
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-66 Score=535.84 Aligned_cols=346 Identities=15% Similarity=0.164 Sum_probs=306.8
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~ 142 (438)
.|||++++++.+.-. ..+.++|+|+|++|++||||+.+.. +.+. ....+++ +.|.|+|+++.
T Consensus 26 ~mkIt~v~~~~~~~~-------------~~~~v~V~v~td~Gi~G~GE~~~~~--~~~~--~~~~i~~~l~p~LiG~dp~ 88 (422)
T 3tji_A 26 PVIIKNIECFITRPD-------------RHNLVTVRVTTEQGITGHGCATFQQ--RPLA--VKTLVDEYLQPLMIGRDAN 88 (422)
T ss_dssp CCBEEEEEEEEECSS-------------SSCEEEEEEEETTSCCEEEECCCTT--SHHH--HHHHHHHTHHHHHTTSBTT
T ss_pred CcEEEEEEEEEEcCC-------------CccEEEEEEEECCCCEEEEeccCCC--CHHH--HHHHHHHHHHHHhCCCCcc
Confidence 499999999764210 1267999999999999999987542 2221 2233555 89999999999
Q ss_pred CHHHHHHHHHHHC--CC-ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhc
Q 013681 143 TLNFALDEIARIL--PG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL 218 (438)
Q Consensus 143 ~~~~~~~~l~~~~--~g-~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (438)
+++.+|+.|++.. .+ ...+++++|||||||||+||..|+|||+||||. ++++|+|.+++..+++++.+++++++++
T Consensus 89 ~ie~~~~~l~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~ 168 (422)
T 3tji_A 89 NIEDLWQMMNVNAYWRNGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSRDAIPAYSHASGETLEALFASVDALIAQ 168 (422)
T ss_dssp CHHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCeEEEEEEeCCCCHHHHHHHHHHHHHc
Confidence 9999999998752 22 234689999999999999999999999999997 7899999988788999999999999999
Q ss_pred CCcEEEEecCCC------------------------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhC
Q 013681 219 GFSTLKLNVGRN------------------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDM 273 (438)
Q Consensus 219 Gf~~iKlKvG~d------------------------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~ 273 (438)
||++||+|+|.+ ++.|++++++||+ .++++.|+||+|++|++++|++++++|+++
T Consensus 169 G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~ 248 (422)
T 3tji_A 169 GYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPF 248 (422)
T ss_dssp TCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGG
T ss_pred CCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 999999999852 5689999999999 589999999999999999999999999999
Q ss_pred CCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHH
Q 013681 274 GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRK 352 (438)
Q Consensus 274 ~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~ 352 (438)
++ .|||||++++|++++++|++ ++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|++
T Consensus 249 ~i--~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~GGit~~~kia~lA~a 322 (422)
T 3tji_A 249 QP--YFIEDILPPQQSAWLEQVRQ----QSCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPALKLAHLCQA 322 (422)
T ss_dssp CC--SEEECCSCGGGGGGHHHHHH----HCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHH
T ss_pred CC--CeEECCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHHHHHH
Confidence 97 49999999999999999986 68999999999999999999999999999999999997 9999999999999
Q ss_pred cCCeEEEccCC-chhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 353 SGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 353 ~gi~~~~~s~~-es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
+|+++++|++. +|+||++|++|++++++|+.+.|+..+....++++.+++.++||++.+|++||||+++|++++++|++
T Consensus 323 ~gv~v~~h~~~~~s~Ig~aA~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~~~ 402 (422)
T 3tji_A 323 FGVRLAWHGPGDMTPIGVAVNTHLNIHLHNAAIQEFIPRSATTNDVFPGAPEVKEGFVYPPVQPGIGVGFNEALALAHPV 402 (422)
T ss_dssp TTCEECCCCCSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHSTTCCCCBTTEECCCCSSBSCCCCCHHHHHTSCC
T ss_pred cCCEEEecCCCCccHHHHHHHHHHHHhCCCCceEeccCcchhhhhccCCCceeECCEEECCCCCcCCCCcCHHHHHhccc
Confidence 99999999985 79999999999999999998888876544455677788899999999999999999999999999997
Q ss_pred c
Q 013681 432 D 432 (438)
Q Consensus 432 ~ 432 (438)
.
T Consensus 403 ~ 403 (422)
T 3tji_A 403 L 403 (422)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-66 Score=534.65 Aligned_cols=349 Identities=17% Similarity=0.213 Sum_probs=307.4
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEee-eeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVEN-VENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~-~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~ 142 (438)
.|||++|+++.+++| ..|+.++.+.... .+.++|+|+||+ ++||||+... +. ....++.+.|.|+|+++.
T Consensus 26 ~mkIt~i~~~~v~~p-~~p~~~~~g~~~~~~~~~~V~v~td~-~~G~GE~~g~-----~~--~~~~i~~l~p~LiG~d~~ 96 (445)
T 3va8_A 26 RSIIKEIVITPVAFH-DMPLLNSVGVHEPFALRSIIEIITED-SYGLGESYGD-----SA--HLDRLQKAADKIKGLSVY 96 (445)
T ss_dssp HTBCCEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEECSS-CEEEEEEECC-----HH--HHHHHHHHHHHHTTSBTT
T ss_pred CCEEEEEEEEEEecC-CcccccccCcccCceeEEEEEEEECC-CEEEEecCCc-----HH--HHHHHHHHHHHHCCCChh
Confidence 499999999999999 8999998876533 567899999999 9999999631 21 223356789999999999
Q ss_pred CHHHHHHHHHHHCCCC----------------hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeC----
Q 013681 143 TLNFALDEIARILPGS----------------EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP---- 201 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~----------------~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~---- 201 (438)
+++.+|+.|++.+.++ ...++++|||+|||||+||..|+|||+||||. +++||+|.++.
T Consensus 97 ~ie~i~~~l~~~~~~~~~~~~~G~~G~~~~~~~~~~A~sAiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~~a~~~y~~~ 176 (445)
T 3va8_A 97 STNVIYQRCVESLRNDTNTGGDGMGGMVVTASVADKVFSPFEVACLDLQGKLAGISVSDLLGGRVRDSVQYSAYLFYKWG 176 (445)
T ss_dssp CHHHHHHHHHHHTTTCCC--CCSSTTSSCCSCHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSSSEEEBCEEEECBCS
T ss_pred HHHHHHHHHHHhhhcccccccccccCccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeEEEeeeeccccc
Confidence 9999999999864321 34579999999999999999999999999997 78999965431
Q ss_pred ------------CCCHHHHHHHHHHHhhc-CCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHH
Q 013681 202 ------------AVSPAEASELASKYCKL-GFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVL 267 (438)
Q Consensus 202 ------------~~~~~~~~~~~~~~~~~-Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l 267 (438)
..+++++.+++++++++ ||++||+|+|. ++++|++++++||+..|++.|+||||++|++++|++++
T Consensus 177 ~~~g~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~~~ 256 (445)
T 3va8_A 177 GHPGDEDDEYGPALDPEGVVKQAKKIIDEYGFKAIKLKGGVFPPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKWVA 256 (445)
T ss_dssp SSTTSCCCTTCCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHHH
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHHHH
Confidence 26899999999998875 99999999997 88999999999999669999999999999999999999
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHH
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~ 346 (438)
++|+++ + .|||||++ |++++++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| +++++++
T Consensus 257 ~~L~~~-l--~~iEeP~~--d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~~GGitea~ki 327 (445)
T 3va8_A 257 KELEGI-V--EYLEDPAG--EIEGMAAVAK----EASMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLRKSQTL 327 (445)
T ss_dssp HHTTTT-C--SEEESCBS--HHHHHHHHHT----TCSSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHHhhh-c--CeEeecCc--CHHHHHHHHH----cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEecchhcCCHHHHHHH
Confidence 999998 7 59999995 7999999985 68999999999999999999999999999999999998 9999999
Q ss_pred HHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee-ecCCCcccc-cCCC-CCceeeeCcEEecCCCCCccceeCh
Q 013681 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLS-EDPF-VGGCEVSGAIYNFTNARGQGGFLKW 423 (438)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~-e~~~pl~~~-~~~~-~~~~~~~~G~~~~p~~pGlGv~ld~ 423 (438)
+++|+++|+++++|++.|++|+++|++|+++++++..+. |...|+... +|.+ .+++.++||++.+|++||||+++|+
T Consensus 328 a~lA~~~gv~v~~h~~~e~~I~~aa~~hlaaa~p~~~~~~d~~~~~~~~~~d~~~~~~~~~~~G~i~vp~~PGLGveld~ 407 (445)
T 3va8_A 328 ASICATWGLRLSMHSNSHLGISLAAMTHLASATPNLDYACDTHWPWKRRDEDVVIEGALKWKDGGVIVPSGPGLGVELDR 407 (445)
T ss_dssp HHHHHHHTCEEEECCCSCCHHHHHHHHHHHHTCTTBCSCBCCCGGGSCTTCCSBCTTSCCEETTEEECCCSSBTSCCBCH
T ss_pred HHHHHHcCCEEEEeCCcccHHHHHHHHHHHHhCCCCceeeeccchhhhcccccccCCCceEECCEEECCCCCcCCCccCH
Confidence 999999999999999999999999999999999998765 444465442 3554 4678999999999999999999999
Q ss_pred hhhhhcc
Q 013681 424 TIVSCTQ 430 (438)
Q Consensus 424 ~~l~~~~ 430 (438)
+++++|+
T Consensus 408 ~~l~~~~ 414 (445)
T 3va8_A 408 ERLAKLH 414 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-66 Score=523.15 Aligned_cols=355 Identities=21% Similarity=0.322 Sum_probs=319.4
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHH-HHHHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-i~~~l~g~~ 140 (438)
|||++++++.+++|++.||.++.++++.++.++|+|+| +|.+||||+.+. |.|+++..+ ....+++ +.|.|.|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~G~d 79 (369)
T 2zc8_A 1 MRIEAAELRILELPLKFRFETSFGVQTKRTILLLRLFG-EGLEGLGEGVMERLPLYREETVAGARYLLEEVFLPRVLGRD 79 (369)
T ss_dssp CBCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEECCCBSSCSSSSCBHHHHHHHHHHTHHHHHTTCB
T ss_pred CEEEEEEEEEEeccccCCEEEeeEEEeeCcEEEEEEEE-CCeEEEEEeccCCCCcccCCCHHHHHHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999999999999 599999999876 556664433 3333554 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC-CCHHHHHHHHHHHhhcC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-VSPAEASELASKYCKLG 219 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~-~~~~~~~~~~~~~~~~G 219 (438)
+.+++.+++.|.. +.++ +++++|||+||||++||..|+|||+||||.+++++++++++. .+++++.+.+++++++|
T Consensus 80 ~~~~~~l~~~~~~-~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G 156 (369)
T 2zc8_A 80 LPNPEALREALAP-FRGN--PMAKAVLEMAFFDLWAKALGRPLWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERHLEEG 156 (369)
T ss_dssp CSSHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTSBHHHHHTCCCSEEEBCEEECCCSSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeceEEecCCCCHHHHHHHHHHHHHhh
Confidence 9999988887742 4443 569999999999999999999999999998778888888776 58999999999999999
Q ss_pred CcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 220 FSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 220 f~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
|+++|+|+|+ ++|++++++||+..+++.|++|+|++|++++ ++++++|+++++ .|||||++++|++++++|++
T Consensus 157 ~~~iKik~~~--~~d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 229 (369)
T 2zc8_A 157 YRRIKLKIKP--GWDYEVLKAVREAFPEATLTADANSAYSLAN-LAQLKRLDELRL--DYIEQPLAYDDLLDHAKLQR-- 229 (369)
T ss_dssp CSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHGGGGGCC--SCEECCSCTTCSHHHHHHHH--
T ss_pred hheeeeecCh--hHHHHHHHHHHHHcCCCeEEEecCCCCCHHH-HHHHHHHHhCCC--cEEECCCCcccHHHHHHHHh--
Confidence 9999999974 7799999999995599999999999999999 999999999997 49999999999999999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~a 378 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++|+++++||+||++|++|++ +
T Consensus 230 --~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla-a 306 (369)
T 2zc8_A 230 --ELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRVHALAESAGIPLWMGGMLEAGVGRAHNLHLA-T 306 (369)
T ss_dssp --HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHT-T
T ss_pred --hCCCCEEEcCccCCHHHHHHHHHhCCCCEEEEchhhhCCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHH-c
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999 9
Q ss_pred cCCcce-eecCCC-cccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 379 LGCIKY-VNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 379 l~~~~~-~e~~~p-l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+++..+ .|++.+ ..+.++++.+++.++||++.+|++||||+++|++++++|++..
T Consensus 307 ~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 363 (369)
T 2zc8_A 307 LPGFTKPGDVSSASRYWEEDIVEEALEAKDGLMPVPEGVGIGVHLKLPFVERVTLWQ 363 (369)
T ss_dssp STTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTCCCBCHHHHHHTEEEE
T ss_pred CCCCCcccccCCcchhhhhccccCCcEEECCEEECCCCCcCCcccCHHHHhhceEEE
Confidence 999888 788765 2456778778888999999999999999999999999998653
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-66 Score=516.98 Aligned_cols=340 Identities=28% Similarity=0.421 Sum_probs=314.2
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHH-HHHHHHHHHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT-KALVKVREACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~-~~~~~~~~i~~~l~g~~~~~ 143 (438)
|||++++++.+++|++.||.++.++.+.++.++|+|+|++|.+||||+.+.+.++++.. .....++++.|.|.|+++.+
T Consensus 2 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~i~~l~~~l~g~d~~~ 81 (345)
T 2zad_A 2 SRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRN 81 (345)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCHHHHCCCHHHHHHTHHHHHHHHTTCBGGG
T ss_pred CEEEEEEEEEEEeeccCCEEecCeeEeeceEEEEEEEECCCCEEEEEecCCCCcCCCCHHHHHHHHHHHHHHhCCCChhh
Confidence 79999999999999999999999999999999999999999999999998765545332 23334566899999999999
Q ss_pred HHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEE
Q 013681 144 LNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTL 223 (438)
Q Consensus 144 ~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~i 223 (438)
++.+|+.| +.+.+ .+++++|||+||||++||..|+|||+||||.++++|+|.+++..+++++.+.+++++++||+++
T Consensus 82 ~~~~~~~l-~~~~~--~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~i 158 (345)
T 2zad_A 82 YARIFEIT-DRLFG--FPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVI 158 (345)
T ss_dssp HHHHHHHH-TTCTT--SHHHHHHHHHHHHHHHHHHHTSCHHHHTTCCCSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHH-HHhcc--chHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCHHHHHHHHHHHHHcCcCEE
Confidence 99999998 43332 3689999999999999999999999999998889999999988899999999999999999999
Q ss_pred EEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc--eEecCCCCCChhhHHHHHHhhcc
Q 013681 224 KLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV--LFEQPVHRDDWSGLHDVSNFARD 301 (438)
Q Consensus 224 KlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~--~iEqPl~~~d~~~~a~L~~~~r~ 301 (438)
|+|+|.++++|++++++||+.++++.|++|+|++|++++|++++++|+++++ . |||||++++|++++++|++
T Consensus 159 Kik~g~~~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~~~iE~P~~~~~~~~~~~l~~---- 232 (345)
T 2zad_A 159 KIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGI--DIAVYEQPVRREDIEGLKFVRF---- 232 (345)
T ss_dssp EEECCSCHHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTC--CCSEEECCSCTTCHHHHHHHHH----
T ss_pred EEeecCCHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CeeeeeCCCCcccHHHHHHHHH----
Confidence 9999999999999999999998899999999999999999999999999986 7 9999999999999999986
Q ss_pred ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcC
Q 013681 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLG 380 (438)
Q Consensus 302 ~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~ 380 (438)
++++||++||++.+..+++++++.+++|++++|+++ | ++++++++++|+++|+++++|++.||+|+++|++|++++++
T Consensus 233 ~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hlaa~~~ 311 (345)
T 2zad_A 233 HSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMK-SGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTG 311 (345)
T ss_dssp HSSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHH-HHHHHHHHHHHHHHTTTCEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred hCCCCEEEeCCcCCHHHHHHHHHhCCCCEEEEeccc-ccHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHcCC
Confidence 589999999999999999999999999999999999 9 99999999999999999999999999999999999999999
Q ss_pred CcceeecCCCcccccCCCCCceeeeCcEEecCCC
Q 013681 381 CIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNA 414 (438)
Q Consensus 381 ~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~ 414 (438)
|..+.|+++|+++.+|++.+++.++||++.+|++
T Consensus 312 ~~~~~e~~~~~~~~~d~~~~~~~~~~G~~~~p~~ 345 (345)
T 2zad_A 312 AFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ 345 (345)
T ss_dssp CCSEECCCGGGGBSSCCCCCSSEEETTEEECCCC
T ss_pred CCceeecCCchhhhhccccCCcEEECCEEeCCCC
Confidence 9999999999877788888889999999999974
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-66 Score=524.86 Aligned_cols=354 Identities=21% Similarity=0.286 Sum_probs=320.3
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCch-HHHHHHHHHH-HhhHhcCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD-QTKALVKVRE-ACQFLRQSPPT 142 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~-~~~~~~~~~~-i~~~l~g~~~~ 142 (438)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|++||||+.. ++ .. ....+++ ++|.|.|+++.
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~Ge~~~-----~~~~~-~~~~i~~~l~~~l~g~d~~ 77 (384)
T 2pgw_A 4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTV-----APDQT-GTAAILYRLAKHLVGHSPH 77 (384)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSSEEEEEEEEEEEEEETTSCEEEEEEEC-----TTCHH-HHHHHHHHHHGGGTTSCGG
T ss_pred CEEEEEEEEEEecccCccceeccceeeeceEEEEEEEECCCCEEEEccCC-----CchHH-HHHHHHHHHHHHHCCCChh
Confidence 89999999999999999999999999999999999999999999999971 22 22 3344554 88999999999
Q ss_pred CHHHHHHH-HHHHC--CCC----hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHH
Q 013681 143 TLNFALDE-IARIL--PGS----EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASK 214 (438)
Q Consensus 143 ~~~~~~~~-l~~~~--~g~----~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~ 214 (438)
+++.+|+. |++.. .+. ..+++++|||+||||++||..|+|||+||||. ++++|+|++++..+++++.+.+++
T Consensus 78 ~~~~~~~~~l~~~~~~~g~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~v~~~~~~~~~~~e~~~~~a~~ 157 (384)
T 2pgw_A 78 DVAPLIARIFHQEYLGHGANIMRAANQIFSGIDMAMWDLQGKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAV 157 (384)
T ss_dssp GHHHHHHHHHHHHTGGGTCCCHHHHHHHHHHHHHHHHHHHHHHHTSBGGGTTTCCSSSEEEBCEECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHHHhHcCCCHHHHcCCCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 99999999 85432 121 14789999999999999999999999999997 789999999887899999999999
Q ss_pred HhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHH
Q 013681 215 YCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHD 294 (438)
Q Consensus 215 ~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~ 294 (438)
++++||+.+|+|+|.+++.|++++++||+..+++.|++|+|++|++++|+++++.|+++++ .|||||++++|++.+++
T Consensus 158 ~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~ 235 (384)
T 2pgw_A 158 GHAQGERVFYLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDI--EFIEQPTVSWSIPAMAH 235 (384)
T ss_dssp HHHTTCCEEEEECCSCHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHH
T ss_pred HHHcCCCEEEECcCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCC--CEEeCCCChhhHHHHHH
Confidence 9999999999999988999999999999953399999999999999999999999999997 49999999999999999
Q ss_pred HHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHH
Q 013681 295 VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373 (438)
Q Consensus 295 L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~ 373 (438)
|++ ++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++++|+++||+||++|++
T Consensus 236 l~~----~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~ 311 (384)
T 2pgw_A 236 VRE----KVGIPIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAAAVAEAAGLKICIHSSFTTGITTCAEH 311 (384)
T ss_dssp HHH----HCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEEECCCSCCHHHHHHHH
T ss_pred HHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHHHHHHHHCCCeEeeccCcCCHHHHHHHH
Confidence 986 58999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHhhcCCcce-ee-cCCCcccccCCCCC-ceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 374 HLAAGLGCIKY-VN-LNTPFLLSEDPFVG-GCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 374 hla~al~~~~~-~e-~~~pl~~~~~~~~~-~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
|+++++++..+ .| +++|+ ..|++.+ ++.++||++.+|++||||+++|++++++|+++
T Consensus 312 hlaaa~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~ 371 (384)
T 2pgw_A 312 HIGLAIPNLDDGNQIMWQLV--QEDIVSSPDLTPKNGWLDAFRKPGLGFQLAEDLVAEGEGR 371 (384)
T ss_dssp HHHHHCSSBCSSBCCCGGGB--SSCSEEESCCCCBTTEEECCCSSBTCCEECHHHHHHHHHH
T ss_pred HHHHhCCCcccccccccCch--hhhhccCCCceEECCEEECCCCCcCCCcCCHHHHHHhhhh
Confidence 99999998776 56 55662 5677777 78889999999999999999999999999854
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-66 Score=524.59 Aligned_cols=351 Identities=17% Similarity=0.172 Sum_probs=307.5
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHH-HHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~i~~~l~g~~~~ 142 (438)
.|||++++++.+++|++.||.++.++++.++.++|+|+|+ |.+||||+.+. + .....++ .++|.|.|+++.
T Consensus 5 ~mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td-G~~G~Ge~~~~-----~--~~~~~i~~~l~~~l~g~d~~ 76 (372)
T 3cyj_A 5 GPRVERLEVSAYTVPTDYPESDGTLQWDSTTMILVEAHGG-GRKGLGYTYGD-----V--SVGRFVESKLAGVAEGSDAL 76 (372)
T ss_dssp -CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEET-TEEEEEEEESC-----T--HHHHHHHHHTHHHHTTSBTT
T ss_pred CCEEeEEEEEEEeccCCCcccCcccccccccEEEEEEEeC-CcEEEEeccCc-----H--HHHHHHHHHHHHHHcCCCcc
Confidence 3899999999999999999999999999999999999999 99999999751 1 1222343 478999999999
Q ss_pred CHHHHHHHHHHHCCC----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCC--CHHHHHHHHHHHh
Q 013681 143 TLNFALDEIARILPG----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV--SPAEASELASKYC 216 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~--~~~~~~~~~~~~~ 216 (438)
+++.+|+.|.+.+.+ ...+++++|||+||||++||..|+|||+||||.++++|+|.+++.. +++++.+++++++
T Consensus 77 ~~~~i~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~vp~~~~~g~~~~~~~~~~~~a~~~~ 156 (372)
T 3cyj_A 77 SPPAVWARMQAAIRNAGRPGVGAMAVSAVDIALWDLKARLLGLPLADALPRFHAEVPVYGSGGFTSYPLRRLQEQLGGWA 156 (372)
T ss_dssp CHHHHHHHHHHHTTTTCSSBHHHHHHHHHHHHHHHHHHHHTTCBHHHHSCCCCSSEEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHcCCcHHHHhCCCCCCceEEEEcCCCCCCHHHHHHHHHHHH
Confidence 999999999876432 2246899999999999999999999999999988899999987765 4578989999999
Q ss_pred hcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhC-CCCCceEecCCCCCChhhHHH
Q 013681 217 KLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDM-GVIPVLFEQPVHRDDWSGLHD 294 (438)
Q Consensus 217 ~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~-~l~~~~iEqPl~~~d~~~~a~ 294 (438)
++||+++|+|+|.++++|+++|++||+ .++++.|+||||++|++++|++++++|++| ++ .|||||++++|++++++
T Consensus 157 ~~G~~~~KiKvG~~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~~i--~~iEqP~~~~d~~~~~~ 234 (372)
T 3cyj_A 157 AAGIPRVKMKVGREPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAREAGI--SYLEEPVSSEDREGLRL 234 (372)
T ss_dssp HTTCCEEEEECCSSGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHHCC--CEEECSSCTTCHHHHHH
T ss_pred HcCCCEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhcCC--cEEECCCCcccHHHHHH
Confidence 999999999999999999999999999 579999999999999999999999999999 97 49999999999999999
Q ss_pred HHHhhccccC--CeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHH
Q 013681 295 VSNFARDTYG--ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 295 L~~~~r~~~~--iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a 371 (438)
|++ +++ +||++||++.+..+++++ .+++|++|+|++++| ++++++++++|+++|+++++|++ .++
T Consensus 235 l~~----~~~~~ipIa~dE~~~~~~~~~~~--~~a~d~i~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~------~~a 302 (372)
T 3cyj_A 235 LRD----RGPGGVAIAAGEYEWTLPQLHDL--AGCVDILQADVTRCGGITGLLRVDGICRGHQIPFSAHCA------PAV 302 (372)
T ss_dssp HHH----HSCTTCEEEECTTCCSHHHHHHH--HTTCSEEEECTTTTTHHHHHTTHHHHHHHHTCCEEECSC------HHH
T ss_pred HHH----hCCCCCCEECCCCccCHHHHHHH--hCCCCEEecCchhhCCHHHHHHHHHHHHHcCCeecccch------HHH
Confidence 986 466 799999999999999988 789999999999997 99999999999999999999997 357
Q ss_pred HHHHHhhcCCcceeecCC-CcccccCCCCCceeeeCcEEecC-CCCCccceeChhhhhhcccccccC
Q 013681 372 ALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFT-NARGQGGFLKWTIVSCTQVDCCHG 436 (438)
Q Consensus 372 ~~hla~al~~~~~~e~~~-pl~~~~~~~~~~~~~~~G~~~~p-~~pGlGv~ld~~~l~~~~~~~~~~ 436 (438)
++|+++++++..+.|+.. +..+..+++.+++.++||++.+| ++||||+++|++++++|++.--||
T Consensus 303 ~lhlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~~PGlGv~~d~~~l~~~~~~~~~~ 369 (372)
T 3cyj_A 303 SAHACCAVESLLHLEYFHDHARVERLLFDGTLDPEGGSLRPDPDRPGLGLELKRSEAGKYAAEGHHH 369 (372)
T ss_dssp HHHHGGGCTTEEEEEEEHHHHHHHHHHEECCCCCGGGEECCCTTSCBTCCEECHHHHHHHBC-----
T ss_pred HHHHHHhCCCCceeeccCCchhhhhHhhcCCCcccCcEEEcCCCCCcccceECHHHHHHHHhhcccc
Confidence 899999999988877432 11234455667788899999999 999999999999999999988755
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-65 Score=520.02 Aligned_cols=354 Identities=20% Similarity=0.298 Sum_probs=318.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHH-HHHHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-i~~~l~g~~ 140 (438)
|||++++++.+++|++.||+++.++++.++.++|+|+|++| +||||+.+. |.++++..+ ....+++ +.|.|.|++
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G-~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~g~d 79 (368)
T 1sjd_A 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAE 79 (368)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHHHSS
T ss_pred CEEEEEEEEEEeccccCCeEeeeeEEecccEEEEEEEeCCC-EEEEEecCCCCCccccCcHHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999999999999999999 999999875 446554432 3334554 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC-CCHHHHHHHHHHHhhcC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-VSPAEASELASKYCKLG 219 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~-~~~~~~~~~~~~~~~~G 219 (438)
+.+++.+++.|.. +.++ +++++|||+||||++||..|+|||+||||.++++|++++++. .+++++.+.+++++++|
T Consensus 80 ~~~~~~l~~~~~~-~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G 156 (368)
T 1sjd_A 80 DITAAKVTPLLAK-FKGH--RMAKGALEMAVLDAELRAHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEG 156 (368)
T ss_dssp SCCHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTCCCSEEEBEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH-hcCC--HHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCccceEEeeCCCCHHHHHHHHHHHHHhC
Confidence 9999988887742 4443 569999999999999999999999999998778998888776 58999999999999999
Q ss_pred CcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHh
Q 013681 220 FSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNF 298 (438)
Q Consensus 220 f~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~ 298 (438)
|+++|+|+|+ +.|++++++||+ .++++.|++|+|++|++++ ++++++|+++++ .|||||++++|++++++|++
T Consensus 157 f~~vKik~~~--~~~~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~- 230 (368)
T 1sjd_A 157 YVRIKLKIEP--GWDVEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGL--LLIEQPLEEEDVLGHAELAR- 230 (368)
T ss_dssp CSEEEEECBT--TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCC--SEEECCSCTTCHHHHHHHHT-
T ss_pred ccEEEEecCc--hhHHHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCC--CeEeCCCChhhHHHHHHHHH-
Confidence 9999999974 779999999999 5799999999999999999 999999999997 49999999999999999985
Q ss_pred hccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 299 ARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 299 ~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++|+++++||+||++|++|++
T Consensus 231 ---~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla- 306 (368)
T 1sjd_A 231 ---RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLGRAANVALA- 306 (368)
T ss_dssp ---TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHH-
T ss_pred ---hCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEeCCccccHHHHHHHHHHH-
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred hcCCcce-eecCCC-cccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 378 GLGCIKY-VNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 378 al~~~~~-~e~~~p-l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
++++..+ .|++.+ ..+.+++ .+++.++||++.+|++||||+++|++.+++|++..
T Consensus 307 a~~~~~~~~e~~~~~~~~~~d~-~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 363 (368)
T 1sjd_A 307 SLPNFTLPGDTSASDRFYKTDI-TEPFVLSGGHLPVPTGPGLGVAPIPELLDEVTTAK 363 (368)
T ss_dssp TSTTBCSCBSCCCGGGTCSSCS-SSCCCCSSSEEECCCSSBTSCCCCHHHHHHHEEEE
T ss_pred cCCCCCcccccCCchhhhhhcC-CCCceEECCEEECCCCCcCCceeCHHHHHhheeee
Confidence 9999888 788765 3456677 77888999999999999999999999999998754
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-65 Score=522.03 Aligned_cols=349 Identities=18% Similarity=0.223 Sum_probs=315.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~~ 143 (438)
|||++++++.+++|++.||+++.++++.++.++|+|+|++|.+||||+.. .+. .....+++ ++|.|.|+++.+
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~td~G~~G~GE~~g-----~~~-~~~~~i~~~l~~~l~G~d~~~ 77 (382)
T 2gdq_A 4 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVD-----WLP-ALHVGFTKRIIPFLLGKQAGS 77 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECS-----CHH-HHHHHHHHTHHHHHTTSBTTC
T ss_pred CEEEEEEEEEEecccCcccccccceeccCcEEEEEEEECCCCEEEEeecC-----chH-HHHHHHHHHHHHHhcCCCccc
Confidence 89999999999999999999999999999999999999999999999972 121 23344565 899999999999
Q ss_pred HHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeC--CCCH---HHHHHHHHHHhh
Q 013681 144 LNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIP--AVSP---AEASELASKYCK 217 (438)
Q Consensus 144 ~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~--~~~~---~~~~~~~~~~~~ 217 (438)
++.+|+.|.+.. +++++|||+||||++||..|+|||+||||. ++++|+|.+++ ..++ +++.+.++++++
T Consensus 78 ~~~~~~~l~~~~-----~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~g~~~~~~~~~e~~~~~a~~~~~ 152 (382)
T 2gdq_A 78 RLSLVRTIQKWH-----QRAASAVSMALTEIAAKAADCSVCELWGGRYREEIPVYASFQSYSDSPQWISRSVSNVEAQLK 152 (382)
T ss_dssp HHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHTTSBHHHHTTCCSCSEEEEEEECCCBCSSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecccCCCcccHHHHHHHHHHHHH
Confidence 999999997542 689999999999999999999999999997 78999997653 3688 999999999999
Q ss_pred cCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhC-CCCCceEecCCCCCChhhHHH
Q 013681 218 LGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDM-GVIPVLFEQPVHRDDWSGLHD 294 (438)
Q Consensus 218 ~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~-~l~~~~iEqPl~~~d~~~~a~ 294 (438)
+||+++|+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+++++.|+++ ++ .|||||++++|++++++
T Consensus 153 ~Gf~~vKik~g~~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i--~~iEqP~~~~d~~~~~~ 230 (382)
T 2gdq_A 153 KGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNI--GWLEEPLPFDQPQDYAM 230 (382)
T ss_dssp TTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCE--EEEECCSCSSCHHHHHH
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCC--eEEECCCCcccHHHHHH
Confidence 999999999997 89999999999999 579999999999999999999999999999 87 59999999999999999
Q ss_pred HHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHH
Q 013681 295 VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373 (438)
Q Consensus 295 L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~ 373 (438)
|++ ++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++++| +.||+++++|++
T Consensus 231 l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~-~~es~i~~~a~l 305 (382)
T 2gdq_A 231 LRS----RLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASAH-AYDGSLSRLYAL 305 (382)
T ss_dssp HHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHHTCEECCC-CSSCSHHHHHHH
T ss_pred HHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeec-CCCcHHHHHHHH
Confidence 985 68999999999999999999999999999999999997 999999999999999999999 789999999999
Q ss_pred HHHhhcCCccee--ecCCCcccccCCCCCcee------eeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 374 HLAAGLGCIKYV--NLNTPFLLSEDPFVGGCE------VSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 374 hla~al~~~~~~--e~~~pl~~~~~~~~~~~~------~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
|+++++++..-+ |.++| +.++++.+++. ++||++.+|++||||+++|++++++|+++.
T Consensus 306 ~laa~~~~~~e~~~d~~~~--~~~d~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 371 (382)
T 2gdq_A 306 FAQACLPPWSKMKNDHIEP--IEWDVMENPFTDLVSLQPSKGMVHIPKGKGIGTEINMEIVNRYKWDG 371 (382)
T ss_dssp HHHHTSCCSSSCTTSCSCC--EEEECSSCGGGGGBCCCCBTTEEECCCSSBTSSCBCHHHHHHTBCCS
T ss_pred HHHHhCchHhhcccccccc--HHHHHhcccccccccccccCCEEECCCCCCCCceeCHHHHHhhhccC
Confidence 999999983211 33345 35667777787 899999999999999999999999998654
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-66 Score=532.71 Aligned_cols=348 Identities=14% Similarity=0.181 Sum_probs=306.6
Q ss_pred ceeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcC-CcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCC
Q 013681 63 FWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSN-GCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSP 140 (438)
Q Consensus 63 ~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~-G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~ 140 (438)
-.|||++|+.+.+. |. ..+.++|+|+|++ |++||||+.+.. ..+ .....+++ +.|.|+|++
T Consensus 25 ~~mkIt~v~~~~~~-----~~--------~~~~v~V~v~Td~~Gi~G~GE~~~~~--~~~--~~~~~i~~~l~p~LiG~d 87 (440)
T 3t6c_A 25 SNLFITNVKTILTA-----PG--------GIDLVVVKIETNEPGLYGLGCATFTQ--RIY--AVQSAIDEYLAPFLIGKD 87 (440)
T ss_dssp -CCCEEEEEEEEEC-----TT--------SSCEEEEEEEESSTTCEEEEECCCGG--GHH--HHHHHHHTTHHHHHTTCC
T ss_pred CCCEEEEEEEEEEC-----CC--------CceEEEEEEEEcCCCCEEEEeeccCC--CHH--HHHHHHHHHHHHHHcCCC
Confidence 34999999997652 10 1267999999999 999999987542 222 22233555 889999999
Q ss_pred CCCHHHHHHHHHHHC--CC-ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHh
Q 013681 141 PTTLNFALDEIARIL--PG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYC 216 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~--~g-~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~ 216 (438)
+.+++.+|+.|++.. .+ ....+|++|||+|||||+||..|+|||+||||. ++++|+|.+++..+++++.+++++++
T Consensus 88 p~~ie~i~~~~~~~~~~~~g~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~ 167 (440)
T 3t6c_A 88 PARIEDIWQSAAVSGYWRNGPVMNNALSGIDMALWDIKGKQAGLPVYELLGGKCRDGIALYVHTDGADEVEVEDSARAKM 167 (440)
T ss_dssp TTCHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSSEEEEEEECCSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCeeEEEEECCCCCHHHHHHHHHHHH
Confidence 999999999998753 22 234679999999999999999999999999997 78999999888889999999999999
Q ss_pred hcCCcEEEEecCC-C----------------------------------------chHHHHHHHHHHh-hCCCcEEEEeC
Q 013681 217 KLGFSTLKLNVGR-N----------------------------------------ITADFDVLQAIHA-VHPHCSFILDA 254 (438)
Q Consensus 217 ~~Gf~~iKlKvG~-d----------------------------------------~~~di~~l~aiR~-~~~~~~L~vDA 254 (438)
++||+++|+|+|. + +++|++++++||+ .++++.|+||+
T Consensus 168 ~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~d~~L~vDa 247 (440)
T 3t6c_A 168 EEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAYAKSIPRLFDHLRNKLGFSVELLHDA 247 (440)
T ss_dssp HTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred HcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 9999999999984 1 4689999999999 57999999999
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
|++|++++|++++++|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|
T Consensus 248 N~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k 321 (440)
T 3t6c_A 248 HERITPINAIHMAKALEPYQL--FFLEDPVAPENTEWLKMLRQ----QSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCH 321 (440)
T ss_dssp TTCSCHHHHHHHHHHTGGGCC--SEEECSSCGGGGGGHHHHHH----HCCSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred CCCCCHHHHHHHHHHhhhcCC--CEEECCCChhhHHHHHHHHh----hcCCCEEeCcccCCHHHHHHHHHcCCccceeec
Confidence 999999999999999999997 59999999999999999986 689999999999999999999999999999999
Q ss_pred CCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecC
Q 013681 335 LAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFT 412 (438)
Q Consensus 335 ~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p 412 (438)
++++| ++++++++++|+++|+++++|++. +|+||++|++|++++++|+.+.|+..+.....+++.+++.++||++.+|
T Consensus 322 ~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~Ig~aa~~hlaaa~pn~~~~E~~~~~~~~~~~~~~~~~~~~G~i~vp 401 (440)
T 3t6c_A 322 ISSIGGITPAKKIAIYSELNGVRTAWHSPGDISPIGVCANMHLDLSSPNFGIQEYTPMNDALREVFPGCPEVDQGYAYVN 401 (440)
T ss_dssp GGGGTSHHHHHHHHHHHHHTTCEECCCCSSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHSTTCCEEETTEEECC
T ss_pred hhhhCCHHHHHHHHHHHHHcCCEEEeccCCCccHHHHHHHHHHHHhCCCCceEeecCcchhhHhhcCCCceecCCEEECC
Confidence 99997 999999999999999999999985 8999999999999999999888887654344567778889999999999
Q ss_pred CCCCccceeChhhhhhccccc
Q 013681 413 NARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 413 ~~pGlGv~ld~~~l~~~~~~~ 433 (438)
++||||+++|++++++|++..
T Consensus 402 ~~PGLGveld~~~l~~~~~~~ 422 (440)
T 3t6c_A 402 DKPGLGIDINEALAAKFPCEG 422 (440)
T ss_dssp CCSBTSCCCCHHHHTTSCCCC
T ss_pred CCCCCCcccCHHHHHhccccc
Confidence 999999999999999999873
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-66 Score=522.51 Aligned_cols=355 Identities=19% Similarity=0.271 Sum_probs=308.8
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHH-HHHHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-i~~~l~g~~ 140 (438)
|||++++++.+++|++.||.++.++++.++.++|+|+| +|++||||+.+. ++|+++..+ ....+++ +.|.|.|++
T Consensus 8 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~t-dG~~G~GE~~~~~~~~~~~e~~~~~~~~i~~~l~~~l~g~d 86 (375)
T 1r0m_A 8 FKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILGQT 86 (375)
T ss_dssp EECCEEEEEEEEEEBC----------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHTTCE
T ss_pred cEEEEEEEEEEeeecCCCeEecceEEeeccEEEEEEEE-CCeEEEEEEecCCCCcccCCCHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999 599999999865 556654432 3333444 789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC-CCHHHHHHHHHHHhhcC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA-VSPAEASELASKYCKLG 219 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~-~~~~~~~~~~~~~~~~G 219 (438)
+.+++.+++.+. .+.++ +++++|||+||||++||..|+|||+||||.+++++++++++. .+++++.+.+++++++|
T Consensus 87 ~~~~~~l~~~~~-~~~g~--~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~G 163 (375)
T 1r0m_A 87 FANPEAVSDALG-SYRGN--RMARAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQG 163 (375)
T ss_dssp ESSHHHHHHTTT-TSCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTCCCSEEEBCEEECCCSSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH-HccCc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceeeeEEecCCCCHHHHHHHHHHHHHhc
Confidence 999988887663 23443 568999999999999999999999999998778888888776 58999999999999999
Q ss_pred CcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 220 FSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 220 f~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
|+++|+|+|+ ++|++++++||+..+++.|++|+|++|++++ ++++++|+++++ .|||||++++|++++++|++
T Consensus 164 ~~~iKik~~~--~~d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~-- 236 (375)
T 1r0m_A 164 YRRIKLKIKP--GWDVQPVRATREAFPDIRLTVDANSAYTLAD-AGRLRQLDEYDL--TYIEQPLAWDDLVDHAELAR-- 236 (375)
T ss_dssp CSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHTTGGGCC--SCEECCSCTTCSHHHHHHHH--
T ss_pred ccEEEEecCh--HHHHHHHHHHHHHcCCCeEEEeCCCCCCHHH-HHHHHHHHhCCC--cEEECCCCcccHHHHHHHHH--
Confidence 9999999974 7799999999995599999999999999999 999999999997 49999999999999999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~a 378 (438)
++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++|+++++||+||++|++|++ +
T Consensus 237 --~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~hla-a 313 (375)
T 1r0m_A 237 --RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLS-T 313 (375)
T ss_dssp --HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHHHHHHTTCCEEECCCCCCHHHHHHHHHHT-T
T ss_pred --hCCCCEEecCccCCHHHHHHHHHhCCCCEEEECcchhcCHHHHHHHHHHHHHcCCcEEecCccccHHHHHHHHHHH-c
Confidence 68999999999999999999999999999999999997 9999999999999999999999999999999999999 9
Q ss_pred cCCcce-eecCCCc-ccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 379 LGCIKY-VNLNTPF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 379 l~~~~~-~e~~~pl-~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+++..+ .|++.+. .+.++++.+++.++||++.+|++||||+++|++++++|++..
T Consensus 314 ~~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 370 (375)
T 1r0m_A 314 LSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLATVTEAQ 370 (375)
T ss_dssp STTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTSCCBCHHHHHHTEEEE
T ss_pred CCCCCcccccCCchhhhhhhcccCCceEECCEEECCCCCcCCCccCHHHHhhheeee
Confidence 999888 7887653 456778778888999999999999999999999999998753
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-65 Score=517.81 Aligned_cols=355 Identities=19% Similarity=0.270 Sum_probs=312.8
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeE-eeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHH-HHhhHhcCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPT 142 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~-~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~i~~~l~g~~~~ 142 (438)
|||++++++.+++|++.||.++.+++ +.++.++|+|+|++|++||||+.+.+. +.+ .....++ .++|.|.|+++.
T Consensus 2 ~kI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~V~v~td~G~~G~Ge~~~~g~-~~~--~~~~~i~~~l~~~l~G~d~~ 78 (371)
T 2ovl_A 2 SLIERVRTDLYRIPLPTRLTDSTHGAMMDFELITVRIEDSDGATGLGYTYTVNH-GGA--AVATMVDKDLRGCLLGADAE 78 (371)
T ss_dssp -CEEEEEEEEEEEEEEEEEBCTTTCCEEEEEEEEEEEEETTSCEEEEEEEEESS-SHH--HHHHHHHHTTHHHHTTSCTT
T ss_pred CceEEEEEEEEeccCCCCCccccccccCcceEEEEEEEECCCCEEEEeecCCCC-chH--HHHHHHHHHHHHHhcCCCcc
Confidence 58999999999999999999999988 999999999999999999999987532 121 2223343 378999999999
Q ss_pred CHHHHHHHHHHHCCC----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC--CCHHHHHHHHHHHh
Q 013681 143 TLNFALDEIARILPG----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--VSPAEASELASKYC 216 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~~~~~~~~~~~~~~ 216 (438)
+++.+|+.|.+...+ ...+++++|||+||||++||..|+|||+||||.++++|+|.+++. .+++++.+.+++++
T Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~v~~y~~~~~~~~~~e~~~~~a~~~~ 158 (371)
T 2ovl_A 79 QIEKIWQSMWWRLHYAGRGGHATSAISAVDIALWDLKGIRARTPLWKLFGGYDPVVPVYAGGIDLELPVADLKTQADRFL 158 (371)
T ss_dssp CHHHHHHHHHHHTCTTCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCCSEEEEEEECCBTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCcCCCHHHHHHHHHHHH
Confidence 999999999875432 234789999999999999999999999999999899999988654 38999999999999
Q ss_pred hcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHH
Q 013681 217 KLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHD 294 (438)
Q Consensus 217 ~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~ 294 (438)
++||+.||+|+|. +++.|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++
T Consensus 159 ~~Gf~~iKik~g~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~ 236 (371)
T 2ovl_A 159 AGGFRAIKMKVGRPDLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDL--HWIEEPTIPDDLVGNAR 236 (371)
T ss_dssp HTTCSCEEEECCCSSHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHH
T ss_pred HcCCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHH
Confidence 9999999999997 89999999999999 57999999999999999999999999999997 49999999999999999
Q ss_pred HHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHH
Q 013681 295 VSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373 (438)
Q Consensus 295 L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~ 373 (438)
|++ ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|++.| +++
T Consensus 237 l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~gi~~~~h~~~~------a~~ 306 (371)
T 2ovl_A 237 IVR----ESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKVAALAEANNMLLTSHGVHD------LTV 306 (371)
T ss_dssp HHH----HHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHHHHHHHHTTCCEEECSCHH------HHH
T ss_pred HHh----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHHHHHHHHcCCeEccccHHH------HHH
Confidence 986 57999999999999999999999999999999999998 9999999999999999999999743 789
Q ss_pred HHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccccccC
Q 013681 374 HLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCCHG 436 (438)
Q Consensus 374 hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~~~ 436 (438)
|+++++++..+.|+.. + +..+++.+++.++||++.+|++||||+++|++++++|++..-||
T Consensus 307 hlaaa~~~~~~~e~~~-~-~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~~~~ 367 (371)
T 2ovl_A 307 HALASVPHRTYMEAHG-F-GLHAYMAEPMAVTDGCVSAPDRPGHGVVLDFERLGRLAVGEGHH 367 (371)
T ss_dssp HHHTSCTTEEEEECC-----CGGGBSSCCCCBTTEEECCCSSBTCCCBCHHHHHTTBC-----
T ss_pred HHHhhCCCCcccccCh-H-HHHHhccCCCeeeCCEEECCCCCCCCCccCHHHHHhhhcccccc
Confidence 9999999988888653 1 34566777788899999999999999999999999999887754
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-66 Score=521.44 Aligned_cols=331 Identities=23% Similarity=0.383 Sum_probs=294.0
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHH-HHHHHHHhhHhcCC-CCCCHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKA-LVKVREACQFLRQS-PPTTLNF 146 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~-~~~~~~i~~~l~g~-~~~~~~~ 146 (438)
+++++.+++||++||.++.++.+.++.++|+| |++|++|||||.+.++++ ++.+. ...++++. |.|. ++.+++.
T Consensus 2 ~i~~~~~~lpl~~p~~~s~g~~~~~~~~~V~v-td~G~~G~GE~~~~~~~g-e~~~~~~~~l~~~~--l~g~~d~~~~e~ 77 (338)
T 3ijl_A 2 KMTFFPYELKLRHVFTVATYSRTTTPDVQVEI-EYEGVTGYGEASMPPYLG-ETVESVMNFLKKVN--LEQFSDPFQLED 77 (338)
T ss_dssp CEEEEECCEEEEEEEEETTEEEEEECEEEEEE-EETTEEEEEEEECCGGGS-CCHHHHHHHHTTCC--CTTCCCTTCHHH
T ss_pred eEEEEEEEEeccCcEEeeCcEEEEeeEEEEEE-EeCCcEEEEeeeCCCCCC-CCHHHHHHHHHHHH--hcCCCCccCHHH
Confidence 46789999999999999999999999999999 889999999999887543 32222 22233322 7888 9999999
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeee-eeeCCCCHHHHHHHHHHHhhcCCcEEEE
Q 013681 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTA-ITIPAVSPAEASELASKYCKLGFSTLKL 225 (438)
Q Consensus 147 ~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~-~~i~~~~~~~~~~~~~~~~~~Gf~~iKl 225 (438)
+|+.|++...+ .+++++||||||||++||..|+|||+||||.++++|.| +++++.+++++.++++++++ ||++||+
T Consensus 78 ~~~~l~~~~~~--~~~A~said~ALwDl~gk~~g~Pl~~LlGg~~~~v~~~~~~~~~~~~e~~~~~a~~~~~-g~~~~K~ 154 (338)
T 3ijl_A 78 ILSYVDSLSPK--DTAAKAAVDIALHDLVGKLLGAPWYKIWGLNKEKTPSTTFTIGIDTPDVVRAKTKECAG-LFNILKV 154 (338)
T ss_dssp HHHHHHHTCSC--CHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCGGGCCBBCCBCCCCCHHHHHHHHHHHHT-TCSSEEE
T ss_pred HHHHHHHhccC--CHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceEEEEEeCCCHHHHHHHHHHHHh-cccEEEE
Confidence 99999876543 36899999999999999999999999999998888854 56788899999999988866 9999999
Q ss_pred ecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCC-HHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC
Q 013681 226 NVGRNITADFDVLQAIHAVHPHCSFILDANEGYT-SEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (438)
Q Consensus 226 KvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s-~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~ 304 (438)
|+|. ++|++++++||+..+ .+||||||++|+ +++|++++++|+++++ .|||||++++|+++|++|++ +++
T Consensus 155 Kvg~--~~d~~~v~avR~~~~-~~l~vDaN~~~t~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 225 (338)
T 3ijl_A 155 KLGR--DNDKEMIETIRSVTD-LPIAVDANQGWKDRQYALDMIHWLKEKGI--VMIEQPMPKEQLDDIAWVTQ----QSP 225 (338)
T ss_dssp ECSS--SCHHHHHHHHHTTCC-CCEEEECTTCCCCHHHHHHHHHHHHHTTE--EEEECCSCTTCHHHHHHHHH----TCS
T ss_pred ecCc--HHHHHHHHHHHhhcC-CcEEEECcCCCCCHHHHHHHHHHHhhCCC--CEEECCCCCCcHHHHHHHHh----cCC
Confidence 9997 479999999999764 699999999995 9999999999999987 59999999999999999986 689
Q ss_pred CeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcc
Q 013681 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIK 383 (438)
Q Consensus 305 iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~ 383 (438)
+||++||++.+..++++++ +++|++|+|++++| ++++++++++|+++|+++++|+++||+|+++|++|+++.+ .
T Consensus 226 ipIa~dE~~~~~~~~~~~~--~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~~la~~~---~ 300 (338)
T 3ijl_A 226 LPVFADESLQRLGDVAALK--GAFTGINIKLMKCTGMREAWKMVTLAHALGMRVMVGCMTETSCAISAASQFSPAV---D 300 (338)
T ss_dssp SCEEESTTCCSGGGTGGGB--TTBSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHTTGGGC---S
T ss_pred CCEEECCCCCCHHHHHHHH--hhCCEEEecccccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHhccC---C
Confidence 9999999999999998875 68999999999997 9999999999999999999999999999999999999865 4
Q ss_pred eeecCCCcccccCCCCCceeeeCcEEecCCCCCcccee
Q 013681 384 YVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFL 421 (438)
Q Consensus 384 ~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~l 421 (438)
+.|+++++++.+|++.+ +.++||++.+|++||||+++
T Consensus 301 ~~~l~~~~~~~~d~~~~-~~~~~G~i~~p~~PGlGv~l 337 (338)
T 3ijl_A 301 FADLDGNLLISNDRFKG-VEVVNGKITLNDLPGIGVMK 337 (338)
T ss_dssp EECCCGGGGBSCCCCBC-CEEETTEEECCSCSBTCCBC
T ss_pred cccccchhhhhhcccCC-ceeECCEEECCCCCccceee
Confidence 66888988888888875 88999999999999999986
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-65 Score=514.56 Aligned_cols=348 Identities=19% Similarity=0.264 Sum_probs=314.9
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHH-HHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~i~~~l~g~~~~~ 143 (438)
|||++++++.+++|++.||.++.++++.++.++|+|+|++|++||||+.+.+ ++.......++ .++|.|.|+++.+
T Consensus 4 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~v~v~td~G~~G~Ge~~~~~---~~~~~~~~~i~~~l~~~l~g~d~~~ 80 (359)
T 1mdl_A 4 VLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYT---PVALKSLKQLLDDMAAMIVNEPLAP 80 (359)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEECSS---GGGHHHHHHHHHHHHHHHTTSBSCH
T ss_pred CEEEEEEEEEEEcCCCCCccccccccccccEEEEEEEeCCCCEEEEEeecCC---CchHHHHHHHHHHHHHHHCCCCccc
Confidence 8999999999999999999999999999999999999999999999998764 22223333455 4889999999999
Q ss_pred HHHHHHHHHHHCC--C--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 144 LNFALDEIARILP--G--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 144 ~~~~~~~l~~~~~--g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
++.+ +.|.+... + ...+++++|||+||||++||..|+|||+||||.++++|+|.+++..+++++.+.+++++++|
T Consensus 81 ~~~~-~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~~k~~g~Pl~~llGg~~~~vp~~~~~g~~~~~~~~~~a~~~~~~G 159 (359)
T 1mdl_A 81 VSLE-AMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELG 159 (359)
T ss_dssp HHHH-HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTCBHHHHTTCCCCCEEEEEECCSCHHHHHHHHHHHHHHTT
T ss_pred hHHH-HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhhhcCCcHHHHhCCCCCCeeeeeecCCCCHHHHHHHHHHHHHcC
Confidence 9988 88876532 2 12578999999999999999999999999999988999998876678999999999999999
Q ss_pred CcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHH
Q 013681 220 FSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 220 f~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
|+++|+|+|. +++.|++++++||+ .++++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 160 f~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~ 237 (359)
T 1mdl_A 160 FRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGV--TWIEEPTLQHDYEGHQRIQS 237 (359)
T ss_dssp CSEEEEECCCSSHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTC--SCEECCSCTTCHHHHHHHHH
T ss_pred CCEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEECCCChhhHHHHHHHHH
Confidence 9999999997 89999999999999 57999999999999999999999999999997 49999999999999999986
Q ss_pred hhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHH
Q 013681 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLA 376 (438)
Q Consensus 298 ~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla 376 (438)
++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++|++ ++ +++|++
T Consensus 238 ----~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A~~~g~~~~~~~~-~~-----a~~~la 307 (359)
T 1mdl_A 238 ----KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLF-QE-----ISAHLL 307 (359)
T ss_dssp ----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHHHHTTCCBCCBSC-HH-----HHHHHH
T ss_pred ----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHHHHHHHHHHHHHcCCeEeeccH-HH-----HHHHHH
Confidence 68999999999999999999999999999999999998 99999999999999999999985 43 899999
Q ss_pred hhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 377 AGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 377 ~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
+++++..++|++ | +.++++.+++.++||++.+|++||||+++|++++++|++
T Consensus 308 aa~~~~~~~e~~-~--~~~d~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~~~~~ 359 (359)
T 1mdl_A 308 AATPTAHWLERL-D--LAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEIGKYLV 359 (359)
T ss_dssp HTCTTBCCEEEC-C--SSTTTBCCCSEEETTEEECCSSSBTCCCBCHHHHHHHBC
T ss_pred HhCCCCcccccC-c--hhhhhccCCceeECCEEECCCCCCCCccCCHHHHHhccC
Confidence 999999888887 5 367788788899999999999999999999999999864
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-66 Score=530.51 Aligned_cols=346 Identities=14% Similarity=0.179 Sum_probs=302.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~~ 143 (438)
++|++++.+.+.- ..++.++|||+||+|++||||+.+. ++++. ....+++ +.|.|+|+++.+
T Consensus 26 ~~It~v~~~~v~~-------------~~~~~vlV~v~Td~G~~G~GEa~~~--~~~~~--~~~~i~~~lap~LiG~dp~~ 88 (421)
T 4hnl_A 26 TIITDVKSFAIKP-------------DRHNLVVVKVETNKGISGLGCSTFQ--FRPLA--VKTVVDEYLRPLLMGRDANE 88 (421)
T ss_dssp CBEEEEEEEEECS-------------SSSCEEEEEEEETTSCCEEEECCCT--TSHHH--HHHHHHHTHHHHHTTCBTTC
T ss_pred ceEEEEEEEEECC-------------CCceEEEEEEEECCCCEEEEeccCC--CCHHH--HHHHHHHHHHHHHCCCChhh
Confidence 6799999876431 1246789999999999999998643 23322 2223444 789999999999
Q ss_pred HHHHHHHHHHHCC---CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcC
Q 013681 144 LNFALDEIARILP---GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLG 219 (438)
Q Consensus 144 ~~~~~~~l~~~~~---g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~G 219 (438)
++.+|+.|+.... +....+|++|||+||||++||..|+|||+||||. ++++|+|.++...+++++.+++++++++|
T Consensus 89 ie~i~~~~~~~~~~~~~~~~~~A~said~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~~G 168 (421)
T 4hnl_A 89 IEDIWQVMNVNSYWRNGPITNNAISGIDMALWDIKGQLADMPLYQLLGGKARTAIPAYTHAVADNLDDLYHEIDRFLAAG 168 (421)
T ss_dssp HHHHHHHHHHTTSSCCSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHhCCCHHHhcCCccCcccceecccCCCCHHHHHHHHHHHHHhh
Confidence 9999999976421 2234678999999999999999999999999997 68999999988889999999999999999
Q ss_pred CcEEEEecCC------------------------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 013681 220 FSTLKLNVGR------------------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (438)
Q Consensus 220 f~~iKlKvG~------------------------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (438)
|+++|+|+|. ++++|+++++++|+ .|+++.|++|+|++|++++|++++++|++++
T Consensus 169 ~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~ 248 (421)
T 4hnl_A 169 YRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGNQFQMLHDVHERLHPNQAIQFAKAAEPYQ 248 (421)
T ss_dssp CSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGC
T ss_pred HHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCCCceEeccccccCCHHHHHHHHHHhhhhh
Confidence 9999999984 25789999999999 5899999999999999999999999999999
Q ss_pred CCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHc
Q 013681 275 VIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKS 353 (438)
Q Consensus 275 l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~ 353 (438)
+ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++
T Consensus 249 i--~~iEeP~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGite~~~ia~~A~~~ 322 (421)
T 4hnl_A 249 L--FFLEDILPPDQSHWLTQLRS----QSATPIATGELFNNPMEWQELVKNRQIDFMRAHVSQIGGITPALKLAHFCDAM 322 (421)
T ss_dssp C--SEEECCSCGGGGGGHHHHHT----TCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHHHHHHT
T ss_pred h--cccccCCcccchHHHHHHHh----cCCCCeecCcceehhHHHHHHHhcCCceEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence 7 59999999999999999985 78999999999999999999999999999999999997 99999999999999
Q ss_pred CCeEEEccCCc-hhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 354 GLHLMIDGMIE-TRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 354 gi~~~~~s~~e-s~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
|+++++|++.+ |+|+++|++|++++++|..+.|........++.+.+++.++||++.+|++||||+|+|++++++|++.
T Consensus 323 gi~v~~h~~~~~s~i~~aa~~hl~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGveld~~~l~~y~~~ 402 (421)
T 4hnl_A 323 GVRIAWHTPSDISPVGLAVNTHLNIHLHNAAIQETIELPANTQSVFVGSPQPKGGFFYPMEKSGIGITFDEEAAADFPVV 402 (421)
T ss_dssp TCEECCCCCSSSCHHHHHHHHHHHHHCTTBCCEECCCCCHHHHHHEECCCCCBTTEECCCCSSBSCCEECHHHHTTCBCC
T ss_pred CCeEEEeCCcchhHHHHHHHHHHHHhCCCCccccccCcchhhhhhccCCCeEECCEEECCCCCCCCeeECHHHHhhcccc
Confidence 99999999986 78999999999999999988876543333345666778899999999999999999999999999865
Q ss_pred c
Q 013681 433 C 433 (438)
Q Consensus 433 ~ 433 (438)
.
T Consensus 403 ~ 403 (421)
T 4hnl_A 403 Y 403 (421)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-65 Score=524.18 Aligned_cols=356 Identities=20% Similarity=0.274 Sum_probs=313.5
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCee--EeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSS--VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSP 140 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~--~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~ 140 (438)
.|+|++++++.+++|++.||.++.++ .+.++.++|+|+|++|++||||+.+ +.+.+ .....+++ +.|.|+|++
T Consensus 38 ~MkI~~i~~~~~~~pl~~p~~~s~g~~~~~~~~~v~V~v~td~G~~G~GE~~~--g~~~~--~~~~~i~~~l~p~liG~d 113 (428)
T 3bjs_A 38 DMKITKINAIPLSYRLPEGKTVTMGVGSTIKRDAIIIRVETSEGITGYGEAHP--GRSPG--AITSLIHNTIAPMLIGMK 113 (428)
T ss_dssp -CBEEEEEEEEEEEECC---CCBCSSCBCSEEEEEEEEEEETTSCEEEEEECC--TTCHH--HHHHHHHHTTTTTTTTSB
T ss_pred CCEEeEEEEEEEecccCCcccccccccccccccEEEEEEEECCCCEEEEEecC--CCCHH--HHHHHHHHHHHHHhCCCC
Confidence 49999999999999999999999998 8889999999999999999999986 22222 23334554 789999999
Q ss_pred CCCHHHHHHHHHHHCC---C--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeC--CCCH-HHHHHHH
Q 013681 141 PTTLNFALDEIARILP---G--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIP--AVSP-AEASELA 212 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~---g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~--~~~~-~~~~~~~ 212 (438)
+.+++.+|+.|.+... + ...+++++||||||||++||..|+|||+||||.++++|+|.+.+ ..++ +++.+.+
T Consensus 114 ~~~~~~i~~~l~~~~~~~~~~~g~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~vp~~~sg~~~~~~~~e~~~~~a 193 (428)
T 3bjs_A 114 ATDCVGAWQRVHRMQLSSHGLGAGAALAISGIDMALWDIRGKAANMPLYELLGGSKRRIPAYAGGIALGYQPKESLAEEA 193 (428)
T ss_dssp TTCHHHHHHHHHHHTTTTTSCTHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCCCCEEEEEESSCSCSCCHHHHHHHH
T ss_pred ccCHHHHHHHHHHhhhhccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCceeeeeeccccCCChHHHHHHHH
Confidence 9999999999966432 2 12568999999999999999999999999999888999997622 3688 9999999
Q ss_pred HHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhh
Q 013681 213 SKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSG 291 (438)
Q Consensus 213 ~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~ 291 (438)
++++++||+++|+|+|.+++.|++++++||+ .++++.|+||+|++|++++|+++++.|+++++ .|||||++++|+++
T Consensus 194 ~~~~~~Gf~~vKik~g~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i--~~iEqP~~~~d~~~ 271 (428)
T 3bjs_A 194 QEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQA--GWLEEPFACNDFAS 271 (428)
T ss_dssp HHHHHHTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTC--SCEECCSCTTCHHH
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCccCHHH
Confidence 9999999999999999989999999999999 58999999999999999999999999999997 49999999999999
Q ss_pred HHHHHHhhccccC-CeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHH
Q 013681 292 LHDVSNFARDTYG-ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLAT 369 (438)
Q Consensus 292 ~a~L~~~~r~~~~-iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~ 369 (438)
+++|++ +++ +||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++++| +.||++++
T Consensus 272 ~~~l~~----~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGitea~~ia~~A~~~gi~~~~~-~~es~i~~ 346 (428)
T 3bjs_A 272 YREVAK----ITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRIAAMASAYRIPINAH-SSATGLNH 346 (428)
T ss_dssp HHHHTT----TCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCBTTTSSCHHHHHHHHHHHHHTTCCBCCB-CCSSHHHH
T ss_pred HHHHHH----hCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEec-CCCcHHHH
Confidence 999975 688 99999999999999999999999999999999997 999999999999999999999 88999999
Q ss_pred HHHHHHHhhcCCcceee----cCCCcccccCCCCCcee-eeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 370 GFALHLAAGLGCIKYVN----LNTPFLLSEDPFVGGCE-VSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 370 ~a~~hla~al~~~~~~e----~~~pl~~~~~~~~~~~~-~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+|++|++++++++.+.| .++|+ .+ ++.+++. ++||++.+|++||||+++|++++++|++..
T Consensus 347 ~a~~hlaaa~~~~~~~E~~~~~~~~~--~~-~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 412 (428)
T 3bjs_A 347 AATIHFLAATENAGYFEACVSKFNPF--RD-MFGTSFEIGADGCVEPPDAPGLGIEVDESIFEKYPAVD 412 (428)
T ss_dssp HHHHHHHHHCTTBCCEEEECCSSCTT--TS-TTTC-CCCCTTSEECCCCSSBTCCCCCGGGTTTSCCCC
T ss_pred HHHHHHHHhCCCccceeccccccccH--HH-hccCCCeeeeCCEEECCCCCCCCCeECHHHHHhhhccC
Confidence 99999999999976653 33452 34 6667788 899999999999999999999999998765
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=517.24 Aligned_cols=359 Identities=14% Similarity=0.220 Sum_probs=314.9
Q ss_pred ccCCcceeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhc
Q 013681 58 NLTETFWVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR 137 (438)
Q Consensus 58 ~~~~~~~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~ 137 (438)
|.+.+..|||++|+++.+. |++.|+.++.+ ++.++|+|+|++|++||||+.+.++ ..+ .....+++++|.|+
T Consensus 4 ~~~~~~~MkI~~i~~~~~~-p~~~~~~~~~~----~~~~~V~v~td~G~~G~GE~~~~~~-~~~--~~~~~i~~l~p~l~ 75 (391)
T 2qgy_A 4 NNQDISIGKLSRLKIWITD-NHLSDDQWSNT----KKFIIIKITTEDGIEGWGEAFSINF-REK--GIAIIIKELFREIS 75 (391)
T ss_dssp -CTTCCCCCEEEEEEEEEC-CCBCGGGCSBC----CCCEEEEEEETTCCEEEEEECCCTT-THH--HHHHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEEEEEEec-CccccccccCC----CcEEEEEEEECCCCEEEecccCCCC-ChH--HHHHHHHHHHHHhc
Confidence 4445556999999999995 77777665533 5679999999999999999998752 222 22334556899999
Q ss_pred CCCCCCHHHHHHHHHH-H--CCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeee--eeC-CCCHHHHHH
Q 013681 138 QSPPTTLNFALDEIAR-I--LPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAI--TIP-AVSPAEASE 210 (438)
Q Consensus 138 g~~~~~~~~~~~~l~~-~--~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~--~i~-~~~~~~~~~ 210 (438)
|+++.+++.+|+.|.+ . ..+...+++++|||+||||++||..|+|||+||||. ++++|+|. +++ ..+++++.+
T Consensus 76 G~d~~~~~~i~~~l~~~~~~~~g~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~~vp~~~~g~~~~~~~~~~~~~ 155 (391)
T 2qgy_A 76 NIPNLSIKSFYNKISLLSDGHRGLDFSSATSAIEIALWDISGKLKNLPLNSLLTKSPKPNVPIYATCWSDLKKDTNDYLR 155 (391)
T ss_dssp TCTTCCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHCSSCCSEEEEEEECCCSSCCCHHHHHH
T ss_pred CCChhHHHHHHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCcCCCcceEEecccCCCCCHHHHHH
Confidence 9999999999999976 3 222222789999999999999999999999999996 68999997 444 568999999
Q ss_pred HHHHHhhcCCcEEEEecCCC-chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCC
Q 013681 211 LASKYCKLGFSTLKLNVGRN-ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD 288 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~d-~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d 288 (438)
.+++++++||+.+|+|+|.+ ++.|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|
T Consensus 156 ~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d 233 (391)
T 2qgy_A 156 QIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNP--YWIEEPVDGEN 233 (391)
T ss_dssp HHHHHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCC--SEEECSSCTTC
T ss_pred HHHHHHHcCCCEEEEccCCChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCC--CeEeCCCChhh
Confidence 99999999999999999977 7999999999999 68999999999999999999999999999997 49999999999
Q ss_pred hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCch-h
Q 013681 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIET-R 366 (438)
Q Consensus 289 ~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es-~ 366 (438)
++++++|++ ++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++++|++ |+ +
T Consensus 234 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~~~~-~~~~ 308 (391)
T 2qgy_A 234 ISLLTEIKN----TFNMKVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPHCW-NSMS 308 (391)
T ss_dssp HHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTTCEECCBCC-SCTT
T ss_pred HHHHHHHHh----hCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCCCEEeccCC-CCcH
Confidence 999999986 58999999999999999999999999999999999997 99999999999999999999998 88 9
Q ss_pred HHHHHHHHHHhhcCCcceeecCC-CcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 367 LATGFALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 367 ig~~a~~hla~al~~~~~~e~~~-pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
||++|++|+++++++..++|++. +..+.++++.+++.++||++.+|++||||+++|++++++|++
T Consensus 309 i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~ 374 (391)
T 2qgy_A 309 VSASAMLHVCSSIPNSEKAEIFPDYINFSKKFCELPFDIIDNKAHINKSAGLGIVIHEDILSELSI 374 (391)
T ss_dssp HHHHHHHHHHHHCTTBCCEEECGGGHHHHHTTBCCSEEEETTEEEECCSSBTCCCBCHHHHHHTEE
T ss_pred HHHHHHHHHHHhCCCCceEeecCccchhhHHHhcCCceeeCCEEECCCCCcCCccCCHHHHHhccC
Confidence 99999999999999998888764 233347788888899999999999999999999999999874
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-65 Score=520.65 Aligned_cols=340 Identities=18% Similarity=0.235 Sum_probs=296.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++|+++.+ | .+ .++|+|+|++|++||||+.+.. +.+. ....++.+.|.|+|+++.++
T Consensus 2 MkIt~i~~~~~--~--~~------------~~~V~v~td~G~~G~GE~~~~g--~~~~--~~~~i~~l~p~liG~dp~~~ 61 (405)
T 3rr1_A 2 VKITRLTTYRL--P--PR------------WMFLKVETDEGVTGWGEPVIEG--RART--VEAAVHELSDYLIGQDPSRI 61 (405)
T ss_dssp CCEEEEEEEEE--T--TT------------EEEEEEEETTSCEEEECCCCTT--CHHH--HHHHHHHHGGGTTTSCTTCH
T ss_pred CeEEEEEEEEE--C--CC------------EEEEEEEECCCCEEEEeCCCCC--CHHH--HHHHHHHHHHHHCCCCcccH
Confidence 89999999876 2 22 3999999999999999998642 2222 22335668999999999999
Q ss_pred HHHHHHHHHH--CCC-ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCC
Q 013681 145 NFALDEIARI--LPG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGF 220 (438)
Q Consensus 145 ~~~~~~l~~~--~~g-~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf 220 (438)
+.+|+.|++. ..+ ...+++++||||||||++||..|+|||+||||. ++++|+|.+++..+++++.+++++++++||
T Consensus 62 e~~~~~l~~~~~~~g~~~~~~A~said~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~e~~~~~a~~~~~~G~ 141 (405)
T 3rr1_A 62 NDLWQTMYRAGFYRGGPILMSAIAGIDQALWDIKGKVLGVPVYELLGGLVRDKMRTYSWVGGDRPADVIAGMKALQAGGF 141 (405)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSCEEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHhCccccCceeeeEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999874 223 234679999999999999999999999999997 789999999998999999999999999999
Q ss_pred cEEEEecCCC----------chHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCCh
Q 013681 221 STLKLNVGRN----------ITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW 289 (438)
Q Consensus 221 ~~iKlKvG~d----------~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~ 289 (438)
++||+ +|.+ +++|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++++|+
T Consensus 142 ~~iKl-~G~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i--~~iEeP~~~~d~ 218 (405)
T 3rr1_A 142 DHFKL-NGCEEMGIIDTSRAVDAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRP--LFIEEPVLAEQA 218 (405)
T ss_dssp CEEEE-ESCCSSSCBCSHHHHHHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCC--SCEECSSCCSST
T ss_pred CEEEE-ecCCcccccccchhHHHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCC--CEEECCCCcccH
Confidence 99999 7752 67899999999994 7999999999999999999999999999997 499999999999
Q ss_pred hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHH
Q 013681 290 SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLA 368 (438)
Q Consensus 290 ~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig 368 (438)
+++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|+|+
T Consensus 219 ~~~~~l~~----~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~~~gi~v~~h~~-~s~i~ 293 (405)
T 3rr1_A 219 ETYARLAA----HTHLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAEAYDVALAPHCP-LGPIA 293 (405)
T ss_dssp HHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHHTTTCEECCBCC-SCHHH
T ss_pred HHHHHHHh----cCCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHHHcCCEEEeCCC-CcHHH
Confidence 99999985 68999999999999999999999999999999999997 99999999999999999999986 79999
Q ss_pred HHHHHHHHhhcCCcceeecC--CCcccccCCCC-----CceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 369 TGFALHLAAGLGCIKYVNLN--TPFLLSEDPFV-----GGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 369 ~~a~~hla~al~~~~~~e~~--~pl~~~~~~~~-----~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
++|++|++++++|..+.|+. .+....++++. +++.++||++.+|++||||+++|++++++|++.
T Consensus 294 ~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~vp~~PGLGveld~~~l~~~~~~ 364 (405)
T 3rr1_A 294 LAACLHVDFVSWNATLQEQSMGIHYNKGAELLDYVRNKADFALEGGYIRPPRLPGLGVDIDEALVIERSKE 364 (405)
T ss_dssp HHHHHHHHHHCTTBCCEEECC--------CGGGGBSCGGGGCEETTEECCCCSSBTSCCBCHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCceeeeeccccccccchhhhhhcccCCCceeeCCEEECCCCCcCCcccCHHHHHhhhcc
Confidence 99999999999998776632 22222333332 267889999999999999999999999999865
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-65 Score=523.41 Aligned_cols=342 Identities=17% Similarity=0.172 Sum_probs=297.6
Q ss_pred eeeEEEEEEEEEEeeccCCcccC--CeeE-eeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLG--LSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSP 140 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s--~~~~-~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~ 140 (438)
.|||++|+++.+++|++.||.++ .++. +.++.++|+|+|+ |++|||||.+.. +++.|.|+|++
T Consensus 11 ~mkI~~i~~~~v~~pl~~~f~~s~~~g~~~~~~~~~~V~i~td-G~~G~GE~~~~~-------------~~l~~~liG~d 76 (392)
T 3v5c_A 11 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSIHMT-------------PEWAEDVIGRR 76 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECCSCC-------------HHHHHTTTTCB
T ss_pred CcEEEEEEEEEEeeecCcccccccccCccCCCceeEEEEEEEc-CCEEEEeecCcH-------------HHHHHHhCCCC
Confidence 59999999999999999999964 7776 6789999999998 999999998641 24678899999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCc-----eeeeee-eCCC---------C
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNS-----LSTAIT-IPAV---------S 204 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~-----ip~~~~-i~~~---------~ 204 (438)
+.++.. ..+....++++|||+|||||+||..|+|||+||||. +++ +|+|.+ ++.. +
T Consensus 77 ~~~~~~--------~~~~~~~~A~aaiD~ALwDl~gK~~g~Pv~~LLGG~~r~~~~~v~v~~y~~~~~~~~~~~~~~~~~ 148 (392)
T 3v5c_A 77 LLDLFD--------DRGRLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAA 148 (392)
T ss_dssp GGGGBC--------TTSCBCGGGHHHHHHHHHHHHHHHHTCBHHHHHSCCCSCCCCCEEEEEEEEEECBTTTTCCCHHHH
T ss_pred HHHHHh--------hccchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCcccccceEEEEEeecccccccccccccC
Confidence 876531 122334678999999999999999999999999997 456 888864 3322 3
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecCCC---------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 013681 205 PAEASELASKYCKLGFSTLKLNVGRN---------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (438)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKlKvG~d---------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (438)
+++|.+++++++++||++||+|+|.+ +++|++++++||+ +||++.|+||||++|++++|++++++|++++
T Consensus 149 ~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~~~L~~~~ 228 (392)
T 3v5c_A 149 VALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN 228 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCTTTTTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCccccccccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHHHhcccCC
Confidence 57788888888999999999999973 6899999999999 6999999999999999999999999999998
Q ss_pred CCCceEecCCCCCChhhHHHHHHhhcc-ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHc
Q 013681 275 VIPVLFEQPVHRDDWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKS 353 (438)
Q Consensus 275 l~~~~iEqPl~~~d~~~~a~L~~~~r~-~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~ 353 (438)
+ .|||||++ +|++++++|++.+++ .+++|||+||++. ..+++++++.+++|++|+|+++.|++++++++++|+++
T Consensus 229 l--~~iEeP~~-~d~~~~~~l~~~~~~~~~~ipIa~gE~~~-~~~~~~li~~~a~dii~~d~~~GGitea~kia~~A~~~ 304 (392)
T 3v5c_A 229 L--YWLEAAFH-EDEALYEDLKEWLGQRGQNVLIADGEGLA-SPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAH 304 (392)
T ss_dssp C--CEEECSSS-CCHHHHHHHHHHHHHHTCCCEEEECCSSC-CTTHHHHHHTTSCCEECCBTTTBCHHHHHHHHHHHHHT
T ss_pred C--eEEeCCCC-cCHHHHHHHHHhhccCCCCCcEECCCccc-HHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 7 59999998 689999999863211 2689999999999 89999999999999999999993399999999999999
Q ss_pred CCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 354 GLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 354 gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
|+++++|++ +|+|+++|++|++++++|..++|++.++. .+...+++.++||++.+|++||||+++|++++++|+++.
T Consensus 305 gv~~~~h~~-~s~i~~aa~~hlaaa~p~~~~~e~~~~~~--~~~~~~~~~~~~G~i~vp~~PGlGve~d~~~l~~~~~~~ 381 (392)
T 3v5c_A 305 GLRSAPHCY-GNAYGIYASGHLSAAVRNFEFVEYDDITI--EGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRS 381 (392)
T ss_dssp TCEECCBCC-SCTHHHHHHHHHGGGCTTBCCEEECCEEE--TTEECTTCEEETTEEEECCSSBTSCEECHHHHHHHHHHT
T ss_pred CCeEEecCC-CcHHHHHHHHHHHHhCCCCceEecccchh--hhccCCCCeeECCEEECCCCCCCCccCCHHHHHhhhccC
Confidence 999999997 89999999999999999999999876543 344566789999999999999999999999999999665
Q ss_pred c
Q 013681 434 C 434 (438)
Q Consensus 434 ~ 434 (438)
-
T Consensus 382 ~ 382 (392)
T 3v5c_A 382 G 382 (392)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-65 Score=518.09 Aligned_cols=352 Identities=15% Similarity=0.212 Sum_probs=316.2
Q ss_pred eeEEEEEEEEEEeeccC--------------------CcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH
Q 013681 65 VDVQRAEGRELNVALSA--------------------PLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK 124 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~--------------------p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~ 124 (438)
|+|++++++.+++|++. ||+++.++.+.+ .++|+|+|++|++||||+.+.. ++. .
T Consensus 3 mkI~~i~~~~~~~pl~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~-~~~V~v~td~G~~G~GE~~~~~---~~~-~ 77 (388)
T 2nql_A 3 SPIATVEVFTLTQPRKVPYLGALREGEVVNPNGYIVRKGNRTVYPTFDR-SVLVRMTTEAGTVGWGETYGIV---APG-A 77 (388)
T ss_dssp CCEEEEEEEEEEECCCSCCGGGCCSCCCCBGGGEEECTTTCCEEESSEE-EEEEEEEETTCCEEEEEEECSS---CHH-H
T ss_pred ceEeEEEEEEEeccCcccccccccccccccccccccCCccccccCccce-EEEEEEEECCCCEEEEEecCCC---CcH-H
Confidence 89999999999999999 999999888888 9999999999999999998762 222 2
Q ss_pred HHHHHHH-HhhHhcCCCCCCHHHHHHHHHH--HC-CC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeee
Q 013681 125 ALVKVRE-ACQFLRQSPPTTLNFALDEIAR--IL-PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAI 198 (438)
Q Consensus 125 ~~~~~~~-i~~~l~g~~~~~~~~~~~~l~~--~~-~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~ 198 (438)
....+++ ++|.|.|+++.+++.+|+.|++ .. .+ ...+++++|||+||||++||..|+|||+||||.++++|+|.
T Consensus 78 ~~~~i~~~l~~~l~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llGg~~~~vp~~~ 157 (388)
T 2nql_A 78 VAALINDLLAGFVIGRDASDPSAVYDDLYDMMRVRGYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYV 157 (388)
T ss_dssp HHHHHHHTHHHHHTTCCSSSHHHHHHHHHHHHGGGTCSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEeeE
Confidence 3344554 8999999999999999999954 22 12 22578999999999999999999999999999988999999
Q ss_pred eeC-CCCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 013681 199 TIP-AVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (438)
Q Consensus 199 ~i~-~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (438)
+++ ..+++++.+.+++++++||+++|+|+|. +++. ++++++||+ .++++.|+||+|++|++++|+++++.|+++++
T Consensus 158 ~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i 236 (388)
T 2nql_A 158 SGLPERTLKARGELAKYWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDP 236 (388)
T ss_dssp ECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCC
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 876 5789999999999999999999999996 7888 999999999 68999999999999999999999999999997
Q ss_pred CCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcC
Q 013681 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSG 354 (438)
Q Consensus 276 ~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~g 354 (438)
.|||||++++|++.+++|++ ++++||++||++.++.+++++++.+++|++++|+++ | ++++++++++|+++|
T Consensus 237 --~~iEqP~~~~d~~~~~~l~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i~~~A~~~g 309 (388)
T 2nql_A 237 --WFAEAPVWTEDIAGLEKVSK----NTDVPIAVGEEWRTHWDMRARIERCRIAIVQPEMGH-KGITNFIRIGALAAEHG 309 (388)
T ss_dssp --SCEECCSCTTCHHHHHHHHT----SCCSCEEECTTCCSHHHHHHHHTTSCCSEECCCHHH-HCHHHHHHHHHHHHHHT
T ss_pred --CEEECCCChhhHHHHHHHHh----hCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHHHHHHHHcC
Confidence 49999999999999999985 689999999999999999999999999999999999 9 999999999999999
Q ss_pred CeEEEccCCchhHHHHHHHHHHhhcCCc--cee-ecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 355 LHLMIDGMIETRLATGFALHLAAGLGCI--KYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 355 i~~~~~s~~es~ig~~a~~hla~al~~~--~~~-e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
+++++|+++||+||++|++|+++++++. .|. |+++| +.++++.+++.++||++.+|++||||+++|++++++|++
T Consensus 310 ~~~~~h~~~es~i~~aa~~hlaa~~~~~~~e~~~d~~~~--~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~ 387 (388)
T 2nql_A 310 IDVIPHATVGAGIFLAASLQASSTLSMLKGHEFQHSIFE--PNRRLLDGDMDCREGRYHLPSGPGLGVRPSEAALGLIER 387 (388)
T ss_dssp CEECCCCCSSCSHHHHHHHHHHTTCTTBCCEEECHHHHT--GGGGGEESCCEEETTEEECCCSSBTSCEECHHHHHHCEE
T ss_pred CeEEeecCCCcHHHHHHHHHHHHhCCchhhhccccccch--HHHHhccCCCcccCCEEECCCCCCCCceECHHHHHhhhc
Confidence 9999999999999999999999999985 232 34455 256677778889999999999999999999999999874
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-64 Score=520.05 Aligned_cols=345 Identities=15% Similarity=0.170 Sum_probs=297.7
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~~~ 142 (438)
.|||++++.+.+. | .++.++|+|+|++|++||||+.+.. +.......+++ +.|.|+|+++.
T Consensus 22 ~mkIt~v~~~~~~-----~---------~~~~v~V~v~td~Gi~G~GE~~~~g----~~~~~~~~l~~~l~p~LiG~dp~ 83 (426)
T 4e4f_A 22 SMKIVSAEVFVTC-----P---------GRNFVTLKITTDSGLTGLGDATLNG----RELPVASYLNDHVCPQLIGRDAH 83 (426)
T ss_dssp CCBEEEEEEEEEC-----S---------SSCEEEEEEEETTSCEEEEECCCTT----CHHHHHHHHHHTHHHHHTTSBTT
T ss_pred CcEEEEEEEEEEc-----C---------CCCEEEEEEEECCCCEEEEecccCC----CcHHHHHHHHHHHHHHHcCCChh
Confidence 5999999987541 1 2468999999999999999987532 12222333444 78999999999
Q ss_pred CHHHHHHHHHHHC---CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhc
Q 013681 143 TLNFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKL 218 (438)
Q Consensus 143 ~~~~~~~~l~~~~---~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~ 218 (438)
+++.+|+.|++.. .+...+++++|||||||||+||..|+|||+||||. ++++|+|.+....+++++.+++++++++
T Consensus 84 ~ie~i~~~l~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~ 163 (426)
T 4e4f_A 84 QIEDIWQYFYKGAYWRRGPVTMSAISAVDMALWDIKAKAANMPLYQLLGGASRTGVMVYCHTTGHSIDEVLDDYAKHRDQ 163 (426)
T ss_dssp CHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHTCCSSSSEEEEEEECCSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhccccCCccchhhHHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeEeEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999998753 22234689999999999999999999999999997 6789999987778999999999999999
Q ss_pred CCcEEEEecCCC-----------------------------------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHH
Q 013681 219 GFSTLKLNVGRN-----------------------------------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEE 262 (438)
Q Consensus 219 Gf~~iKlKvG~d-----------------------------------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~ 262 (438)
||++||+|+|.+ ++.+++++++||+ .++++.|+||+|++|++++
T Consensus 164 Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v~avR~a~G~d~~L~vDaN~~~~~~~ 243 (426)
T 4e4f_A 164 GFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKLFEAVRDKFGFNEHLLHDMHHRLTPIE 243 (426)
T ss_dssp TCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHH
T ss_pred CCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHH
Confidence 999999999842 1225789999999 5899999999999999999
Q ss_pred HHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HH
Q 013681 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~ 341 (438)
|++++++|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++
T Consensus 244 A~~~~~~L~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit 317 (426)
T 4e4f_A 244 AARFGKSVEDYRL--FWMEDPTPAENQACFRLIRQ----HTVTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAGGIT 317 (426)
T ss_dssp HHHHHHHTGGGCC--SEEECCSCCSSGGGGHHHHT----TCCSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHHhhcCC--CEEECCCChHHHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 9999999999997 59999999999999999985 68999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHcCCeEEEcc-CCchhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccce
Q 013681 342 GTLQIIKATRKSGLHLMIDG-MIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (438)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s-~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 420 (438)
++++++++|+++|+++++|+ +.+|+|+++|++|++++++|+.++|++++.....+.+++++.++||++.+|++||||++
T Consensus 318 ~~~~ia~~A~~~gi~v~~h~~~~~s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGLGve 397 (426)
T 4e4f_A 318 GMRRIADFASLYQVRTGSHGPSDLSPICMAAALHFDLWVPNFGVQEYMGYSEQMLEVFPHSWTFDNGYMHPGEKPGLGIE 397 (426)
T ss_dssp HHHHHHHHHHTTTCEEEECCCTTSCHHHHHHHHHHHHHCTTEEEEECCCCCHHHHHHSCCCCEEETTEEECCSSSBTCCC
T ss_pred HHHHHHHHHHHcCCEEeeeCCCCccHHHHHHHHHHHHhCCCceeEeecCcchhhHhhcCCCceeeCCEEECCCCCCCCcc
Confidence 99999999999999999997 45899999999999999999998888764211122456778899999999999999999
Q ss_pred eChhhhhhcccc
Q 013681 421 LKWTIVSCTQVD 432 (438)
Q Consensus 421 ld~~~l~~~~~~ 432 (438)
+|++++++|++.
T Consensus 398 ~de~~~~~~~~~ 409 (426)
T 4e4f_A 398 FDEKLAAKYPYD 409 (426)
T ss_dssp CCHHHHTTSCCC
T ss_pred cCHHHHHhccCc
Confidence 999999999864
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-64 Score=511.68 Aligned_cols=346 Identities=16% Similarity=0.220 Sum_probs=307.1
Q ss_pred eeEEEEEEEEEEeeccCCcc---cC-CeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCC
Q 013681 65 VDVQRAEGRELNVALSAPLS---LG-LSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQS 139 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~---~s-~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~ 139 (438)
|||++++++.+++|++.||+ ++ .++++.++.++|+|+|++|++|||||.+ +.. ....+++ ++|.|.|+
T Consensus 1 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~------~~~-~~~~i~~~l~~~l~g~ 73 (382)
T 1rvk_A 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAP------EIV-RPHVIEKFVKKVLIGE 73 (382)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECG------GGG-CHHHHHHTHHHHHTTS
T ss_pred CeEeEEEEEEEecCCCCcccccccccccccccceEEEEEEEECCCCEEEEEecC------chH-HHHHHHHHHHHHHcCC
Confidence 79999999999999999998 77 6778889999999999999999999972 111 2233453 78999999
Q ss_pred CCCCHHHHHHHHHHH-C-C-CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeee--C------CCCHHHH
Q 013681 140 PPTTLNFALDEIARI-L-P-GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITI--P------AVSPAEA 208 (438)
Q Consensus 140 ~~~~~~~~~~~l~~~-~-~-g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i--~------~~~~~~~ 208 (438)
++.+++.+|+.|++. . . +...+++++|||+||||++||..|+|||+||||.++++|+|.++ + ..+++++
T Consensus 74 d~~~~~~~~~~l~~~~~~~g~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~vp~~~~~~~g~~~~~~~~~~e~~ 153 (382)
T 1rvk_A 74 DHRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGGYRDKVLAYGSIMCGDELEGGLATPEDY 153 (382)
T ss_dssp BTTCHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCCSCSEEEEEEEECCCCCCTTTTSSHHHH
T ss_pred ChHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhHhHhCCCHHHHhCCCCCcceecEEeccCccccccCCCHHHH
Confidence 999999999999653 2 1 22247899999999999999999999999999998899999543 3 4689999
Q ss_pred HHHHHHHhhcCCcEEEEecCC-------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 013681 209 SELASKYCKLGFSTLKLNVGR-------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~-------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (438)
.+.+++++++||+++|+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+++++.|+++++ .||
T Consensus 154 ~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~i 231 (382)
T 1rvk_A 154 GRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGF--DWI 231 (382)
T ss_dssp HHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTC--SEE
T ss_pred HHHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CEE
Confidence 999999999999999999996 78999999999999 68999999999999999999999999999997 499
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCC-HHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEE
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS-LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~-~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~ 358 (438)
|||++++|++++++|++ ++++||++||++.+ +.+++++++.+++|++++|++++| ++++++++++|+++|++++
T Consensus 232 E~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~ 307 (382)
T 1rvk_A 232 EEPMDEQSLSSYKWLSD----NLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECE 307 (382)
T ss_dssp ECCSCTTCHHHHHHHHH----HCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCCEE
T ss_pred eCCCChhhHHHHHHHHh----hCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCCHHHHHHHHHHHHHcCCeEe
Confidence 99999999999999986 58999999999999 999999999999999999999997 9999999999999999999
Q ss_pred EccCCchhHHHHHHHHHHhhcCCcceeecC----------CCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhh
Q 013681 359 IDGMIETRLATGFALHLAAGLGCIKYVNLN----------TPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSC 428 (438)
Q Consensus 359 ~~s~~es~ig~~a~~hla~al~~~~~~e~~----------~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~ 428 (438)
+| +.|++ ++|+++++++..++|+. +|++ .++++ +++. +||++.+|++||||+++|++++++
T Consensus 308 ~~-~~~~~-----~~~laaa~~~~~~~E~~~~~~~~~~~~~~~~-~~d~~-~~~~-~~G~~~~p~~PGlGv~~d~~~l~~ 378 (382)
T 1rvk_A 308 VH-GNTAM-----NLHVVAATKNCRWYERGLLHPFLEYDDGHDY-LKSLS-DPMD-RDGFVHVPDRPGLGEDIDFTFIDN 378 (382)
T ss_dssp EC-CCSHH-----HHHHHHHCSSCCCEEEEEECTTSCGGGCCTT-BSSCS-SCBC-TTSEEECCSCSBTCCCBCHHHHHH
T ss_pred ec-CCCCH-----HHHHHHhCCccceeeeccccccccccccchh-HHhhc-cCCC-cCCEEECCCCCCCccccCHHHHHh
Confidence 99 56876 88999999998877654 4433 56677 7788 999999999999999999999999
Q ss_pred cccc
Q 013681 429 TQVD 432 (438)
Q Consensus 429 ~~~~ 432 (438)
|+++
T Consensus 379 ~~~~ 382 (382)
T 1rvk_A 379 NRVR 382 (382)
T ss_dssp TBC-
T ss_pred hcCC
Confidence 9864
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-64 Score=514.06 Aligned_cols=343 Identities=15% Similarity=0.182 Sum_probs=298.3
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~ 143 (438)
.|||++|+++.+..+ .++.++|+|+|++|++||||+.+. ++.+... ..++.+.|.|+|+++.+
T Consensus 2 ~MkI~~i~~~~~~~~-------------~~~~~~V~v~td~G~~G~GE~~~~--~~~~~~~--~~i~~l~p~liG~d~~~ 64 (409)
T 3go2_A 2 SLKVVSVDTLCCDAG-------------WRNYHFVKLTTDEGIVGWSEFDEG--FGSPGVT--AVIEQLGKRLVGASVME 64 (409)
T ss_dssp CCBEEEEEEEEEECS-------------SSEEEEEEEEETTCCEEEEEECST--TTCTTHH--HHHHHHHHHHTTSBTTC
T ss_pred CCEEEEEEEEEECCC-------------CccEEEEEEEECCCCEEEEeecCC--CCcHHHH--HHHHHHHHHhcCCChhh
Confidence 599999999876532 246799999999999999998753 2332222 23466899999999999
Q ss_pred HHHHHHHHHHHCC---CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeee--------------CCCCH
Q 013681 144 LNFALDEIARILP---GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI--------------PAVSP 205 (438)
Q Consensus 144 ~~~~~~~l~~~~~---g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i--------------~~~~~ 205 (438)
++.+|+.|++... +...+++++|||||||||+||..|+|||+||||. ++++|+|++. +..++
T Consensus 65 ~e~~~~~~~~~~~~~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~~~~~i~~~~~~~~~~~~~ 144 (409)
T 3go2_A 65 HERFFAEAYCLTRPATGGVVSEGIGAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWRINHPKFFGPPVTDL 144 (409)
T ss_dssp HHHHHHHHHHHHGGGCSHHHHHHHHHHHHHHHHHHHHHHTSBGGGGTTCCSCSEEEEEECSTTHHHHHCTTTSSSCCCSH
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCCCCCeEEEEEeecCccccccccccccCCCCH
Confidence 9999999987532 2235679999999999999999999999999997 7899999653 34689
Q ss_pred HHHHHHHHHHhhcCCcEEEEec-------------CCC-------------chHHHHHHHHHHh-hCCCcEEEEeCCCCC
Q 013681 206 AEASELASKYCKLGFSTLKLNV-------------GRN-------------ITADFDVLQAIHA-VHPHCSFILDANEGY 258 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKv-------------G~d-------------~~~di~~l~aiR~-~~~~~~L~vDAN~~~ 258 (438)
+++.+.+++++++||++||+|+ |.+ ++.|++++++||+ +++++.|+||+|++|
T Consensus 145 e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN~~~ 224 (409)
T 3go2_A 145 DGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLNFNA 224 (409)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCS
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 9999999999999999999999 521 3578999999999 589999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
++++|++++++|+++++ .|||||+. |++++++|++ ++++||++||++.++.+++++++.+++|++|+|+++
T Consensus 225 ~~~~A~~~~~~L~~~~i--~~iE~P~~--d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~- 295 (409)
T 3go2_A 225 KPEGYLKILRELADFDL--FWVEIDSY--SPQGLAYVRN----HSPHPISSCETLFGIREFKPFFDANAVDVAIVDTIW- 295 (409)
T ss_dssp CHHHHHHHHHHTTTSCC--SEEECCCS--CHHHHHHHHH----TCSSCEEECTTCCHHHHHHHHHHTTCCSEEEECHHH-
T ss_pred CHHHHHHHHHHHhhcCC--eEEEeCcC--CHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEeCCCC-
Confidence 99999999999999997 59999984 8999999986 689999999999999999999999999999999999
Q ss_pred h-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCC-CcccccCCCCCceeeeCcEEecCCCCC
Q 013681 339 G-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFTNARG 416 (438)
Q Consensus 339 G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~-pl~~~~~~~~~~~~~~~G~~~~p~~pG 416 (438)
| ++++++++++|+++|+++++|+ +||+|+++|++|++++++|+.++|++. +..+.++++.+++.++||++.+|++||
T Consensus 296 GGit~~~~ia~~A~~~gi~~~~h~-~~s~i~~aa~~hlaaa~p~~~~~E~~~~~~~~~~d~~~~~~~~~~G~i~~p~~PG 374 (409)
T 3go2_A 296 NGVWQSMKIAAFADAHDINVAPHN-FYGHLCTMINANFAAAVPNLRIMETDIDRLAWEDELFTHAPEYQNGELIIPDRPG 374 (409)
T ss_dssp HCHHHHHHHHHHHHHTTCEEEECC-CSCHHHHHHHHHHHHHCSSBCCEEECCCCCTTHHHHBSCCCCEETTEEECCCSSB
T ss_pred CCHHHHHHHHHHHHHcCCEEeecC-CCcHHHHHHHHHHHHcCCCCeEEEeeCCcchhhhhhccCCCeeECCEEECCCCCC
Confidence 8 9999999999999999999985 799999999999999999998877653 233445677788899999999999999
Q ss_pred ccceeChhhhhhccccc
Q 013681 417 QGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 417 lGv~ld~~~l~~~~~~~ 433 (438)
||+++|++++++|++..
T Consensus 375 lGveld~~~l~~~~~~~ 391 (409)
T 3go2_A 375 WGTDPVEEAILAHPPKV 391 (409)
T ss_dssp SSCCBCHHHHHHSCC--
T ss_pred CCcccCHHHHHhCcCCC
Confidence 99999999999999764
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-64 Score=523.64 Aligned_cols=350 Identities=18% Similarity=0.228 Sum_probs=305.4
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCee-EeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSS-VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~-~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~ 142 (438)
.|||++|+++++..| +.+..++.+. ....+.++|+|+||+|++||||+.. .+. ....++++.|.|+|+++.
T Consensus 7 ~~~It~i~~~~v~~~-d~~~~~~~g~h~p~~~~~~V~i~td~Gi~G~GE~~~-----~~~--v~~~i~~l~p~LiG~d~~ 78 (470)
T 3p0w_A 7 TPRVTEMQVIPVAGR-DSMLLNLCGAHAPFFTRNLVILKDNAGRTGVGEVPG-----GEG--IRQALERVIPLVVGQSIG 78 (470)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHH--HHHHHHHTGGGTTTCBGG
T ss_pred CCeEEEEEEEEecCC-CcccccccccCCCcceEEEEEEEECCCCEEEEeCCC-----hHH--HHHHHHHHHHHhCCCChh
Confidence 489999999999999 7777777665 3457899999999999999999853 122 223356689999999999
Q ss_pred CHHHHHHHHHHHCCCC---h--------------------------hhHHHHHHHHHHHHHHHHHCCCCHHHHhC-CC-C
Q 013681 143 TLNFALDEIARILPGS---E--------------------------FASVRAGVEMALIDAVANSIDIPLWRLFG-GA-S 191 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~---~--------------------------~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg-g~-~ 191 (438)
+++.+|+.|++.+.+. . ..+|++|||+|||||+||..|+|||+||| |. +
T Consensus 79 ~ie~i~~~~~~~~~~~~~~G~~~~~~~~~r~~~p~~~~g~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~r 158 (470)
T 3p0w_A 79 RTNGVLSSIRRALAGGGNAAHQATVHQVTSASEAAVLRQPHEINLRMDNVITAVEAALLDLLGQFLEVPVAELLGAGQQR 158 (470)
T ss_dssp GHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHTSBGGGTSTTSCCC
T ss_pred hHHHHHHHHHHHHhhcCCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCC
Confidence 9999999998864210 0 23789999999999999999999999999 65 7
Q ss_pred Cceeeeeee-----------------------------CCCCHHHHHHHHHHHhh-cCCcEEEEecCC-CchHHHHHHHH
Q 013681 192 NSLSTAITI-----------------------------PAVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQA 240 (438)
Q Consensus 192 ~~ip~~~~i-----------------------------~~~~~~~~~~~~~~~~~-~Gf~~iKlKvG~-d~~~di~~l~a 240 (438)
++||+|.+. +..+++++.++++++++ +||++||+|+|. +.++|++++++
T Consensus 159 ~~v~~y~~~~~~gd~~~t~~~~~~~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~rv~a 238 (470)
T 3p0w_A 159 DSAPMLAYLFYVGDRRKTDLPYLEGANGADDWLRLRHEAAMTPAAIARLAEAATERYGFADFKLKGGVMPGAEEMEAIAA 238 (470)
T ss_dssp SEEEBCEEECCBCCGGGSCSCCCCCCTTCCHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSSSCHHHHHHHHHH
T ss_pred CeEEEeeeeccccccccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHH
Confidence 899998653 13579999999999888 699999999996 78999999999
Q ss_pred HHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCC----hhhHHHHHHhhccccCCeEEEcCCCCCH
Q 013681 241 IHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYGISVVADESCRSL 316 (438)
Q Consensus 241 iR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d----~~~~a~L~~~~r~~~~iPIa~dEsl~~~ 316 (438)
||+.+|++.|+||||++|++++|++++++|+++ + .|||||++++| ++++++|++ ++++|||+||++.+.
T Consensus 239 vRea~pd~~L~vDaN~~w~~~~Ai~~~~~Le~~-l--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~ 311 (470)
T 3p0w_A 239 IKARFPHARVTLDPNGAWSLNEAIALCKGQGHL-V--AYAEDPCGPEAGYSGREVMAEFKR----ATGIPTATNMIATDW 311 (470)
T ss_dssp HHHHCTTSEEEEECTTBBCHHHHHHHHTTCTTT-C--SEEESCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSSCSH
T ss_pred HHHhCCCCeEEeeCCCCCCHHHHHHHHHhcccc-c--eeecCCCChhhccchHHHHHHHHh----cCCCCEEeCCccCCH
Confidence 999889999999999999999999999999998 6 59999999998 689999986 689999999999999
Q ss_pred HHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCccc--
Q 013681 317 NDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLL-- 393 (438)
Q Consensus 317 ~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~-- 393 (438)
.+++++++.+++|++|+|+ ++| ++++++++++|+++|+++++|++.|++|+++|++|++++++|. +.+++.++..
T Consensus 312 ~~~~~~l~~~a~div~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~e~~I~~aA~~hlaaa~pn~-~~~~d~~~~~~~ 389 (470)
T 3p0w_A 312 RQMGHAVQLHAVDIPLADP-HFWTMQGSVRVAQLCDEWGLTWGSHSNNHFDVSLAMFTHVAAAAPGN-ITAIDTHWIWQE 389 (470)
T ss_dssp HHHHHHHHTTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHHTCCSC-CCCBCCCHHHHT
T ss_pred HHHHHHHHcCCCCEEEecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-ceeecccccccc
Confidence 9999999999999999999 677 9999999999999999999999999999999999999999986 4455544321
Q ss_pred -ccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcc
Q 013681 394 -SEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 394 -~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
..+++.+++.++||++.+|++||||+|+|+++|++|.
T Consensus 390 ~~~~l~~~p~~~~dG~i~vP~~PGLGveld~~~l~~~~ 427 (470)
T 3p0w_A 390 AQERLTREPLRIQGGHVAVPERPGLGIEIDMDRVMAAH 427 (470)
T ss_dssp TTCCCBSSCCCEETTEEECCSSSBTSCCBCHHHHHHHH
T ss_pred chhhhcCCCceeECCEEECCCCCCcCceeCHHHHHHhh
Confidence 2456777888999999999999999999999999976
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-64 Score=515.35 Aligned_cols=341 Identities=15% Similarity=0.155 Sum_probs=287.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++|+++.++ ..++.++|+|+||+|++||||+.. +.+.... ...+.+.|.|+|+++.++
T Consensus 1 MkIt~ie~~~~~--------------~~~~~~~V~v~td~G~~G~GE~~~----~~~~~~~-~i~~~l~p~liG~dp~~~ 61 (400)
T 4dxk_A 1 MKITKLETVRVA--------------ERTNLLWVLVHTDEGITGLGETFF----GAETVET-YVHEYIAPRVIGRDPLQI 61 (400)
T ss_dssp CCEEEEEEEEET--------------TSTTEEEEEEEETTSCCEEEEEES----CHHHHHH-HHHHTHHHHHTTSCTTCH
T ss_pred CeEEEEEEEEEC--------------CCCCEEEEEEEECCCCEEEEcCCC----CccHHHH-HHHHHHHHHhCCCCcchH
Confidence 899999997754 124679999999999999999542 2222221 123458899999999999
Q ss_pred HHHHHHHHHHCCC----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCC-----------------
Q 013681 145 NFALDEIARILPG----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPA----------------- 202 (438)
Q Consensus 145 ~~~~~~l~~~~~g----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~----------------- 202 (438)
+.+|+.| ..+.+ ....++++|||||||||+||..|+|||+||||. ++++|+|.++..
T Consensus 62 ~~~~~~~-~~~~~~~~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~~~~~~~~~~~~~~~~ 140 (400)
T 4dxk_A 62 DLLAQDL-VGYLGFRSSGAEVRGNSAFDIALWDIFGKATNQPIAQLLGGFSRREIRTYNTCAGTEYIKKATGQQTANYGL 140 (400)
T ss_dssp HHHHHHH-CCSSSCSSCSHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSCEEEEBC--------------------
T ss_pred HHHHHHH-HHHhccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCccCceeEEEecccccccccccccccccccc
Confidence 9999999 43322 234689999999999999999999999999997 789999965421
Q ss_pred --CCHHH--------HHHHHHHHhhcCCcEEEEecCC--------------CchHHHHHHHHHHhh-CCCcEEEEeCCCC
Q 013681 203 --VSPAE--------ASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAV-HPHCSFILDANEG 257 (438)
Q Consensus 203 --~~~~~--------~~~~~~~~~~~Gf~~iKlKvG~--------------d~~~di~~l~aiR~~-~~~~~L~vDAN~~ 257 (438)
.++++ ..+.+++++++||++||+|+|. ++++|++++++||+. ++++.|+||+|++
T Consensus 141 ~~~~~~~~~~g~~~~~~~~a~~~~~~G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~ 220 (400)
T 4dxk_A 141 SGGKDYDDLNGFLHRADELAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSM 220 (400)
T ss_dssp --------------CHHHHHHHHHHTTCCEEEECTTHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTTC
T ss_pred cccccchhcccccccHHHHHHHHHHhCCCEEEEcCCCccccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCC
Confidence 12222 2455667889999999999971 367899999999994 7899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
|++++|++++++|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|+++
T Consensus 221 ~~~~~A~~~~~~L~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~~~ 294 (400)
T 4dxk_A 221 WQLLPAMQIAKALTPYQT--FWHEDPIKMDSLSSLTRYAA----VSPAPISASETLGSRWAFRDLLETGAAGVVMLDISW 294 (400)
T ss_dssp BCHHHHHHHHHHTGGGCC--SEEECCBCTTSGGGHHHHHH----HCSSCEEECTTCCHHHHHHHHHHTTCCCEEEECTTT
T ss_pred CCHHHHHHHHHHHhhcCC--CEEEcCCCcccHHHHHHHHH----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccc
Confidence 999999999999999997 59999999999999999986 689999999999999999999999999999999999
Q ss_pred ch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeec-CC-CcccccCCCCCceeeeCcEEecCCC
Q 013681 338 FG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL-NT-PFLLSEDPFVGGCEVSGAIYNFTNA 414 (438)
Q Consensus 338 ~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~-~~-pl~~~~~~~~~~~~~~~G~~~~p~~ 414 (438)
+| ++++++++++|+++|+++++|++. |+|+++|++|++++++|..+.|. +. ...+.++++.+++.++||++.+|++
T Consensus 295 ~GGit~~~kia~~A~~~gi~~~~h~~~-s~i~~aa~~hlaaa~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~~ 373 (400)
T 4dxk_A 295 CGGLSEARKIASMAEAWHLPVAPHXCT-GPVVLCASTHLSLNAPNALVQESVRAFYKTWYRDLVTALPEVKNGMITVPPG 373 (400)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEC-CC-CHHHHHHHHHHHHHCTTBCCEECCTTC-CCTHHHHBSCCCEEETTEEECCSS
T ss_pred cCCHHHHHHHHHHHHHcCCEEEecCCC-ChHHHHHHHHHHHhCCCceeEEecccccchhhHhhcCCCCeeeCCEEECCCC
Confidence 97 999999999999999999999874 99999999999999999988873 32 1123355677788999999999999
Q ss_pred CCccceeChhhhhhcccc
Q 013681 415 RGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 415 pGlGv~ld~~~l~~~~~~ 432 (438)
||||+++|++++++|++.
T Consensus 374 PGlGveld~~~l~~~~~~ 391 (400)
T 4dxk_A 374 AGLGMELHPDIEKTFTVS 391 (400)
T ss_dssp SBTSCCBCTTGGGTSCEE
T ss_pred CCCCCcCCHHHHhhccce
Confidence 999999999999999864
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-64 Score=519.33 Aligned_cols=350 Identities=16% Similarity=0.214 Sum_probs=304.1
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCee-EeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSS-VENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~-~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~ 142 (438)
.++|++++++++..+ +.|..+..+. -+....++|+|+|++|++||||+... +. ....++++.|.|+|+++.
T Consensus 4 ~~~It~v~~~~v~~~-d~~~~~~~g~~~~~~~~~iV~v~td~Gi~G~GE~~~~-----~~--v~~~i~~l~p~LiG~dp~ 75 (450)
T 3mzn_A 4 FPKITKMNVVPVAGE-DGFLLNLSGGHEPWFIRCVLVLEDESGNRGVGEIPSS-----EG--ILNGLEKCRSLVEGARVN 75 (450)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECC-----HH--HHHHHHHTHHHHTTCBGG
T ss_pred CCEEEEEEEEEeccc-CccccccccCCCCcceEEEEEEEECCCCEEEEeCCCc-----HH--HHHHHHHHHHHhCCCChh
Confidence 379999999999888 6666655443 45577889999999999999998631 22 223356689999999999
Q ss_pred CHHHHHHHHHHHCCC-------C------hhhHHHHHHHHHHHHHHHHHCCCCHHHHhC--CC-CCceeeeeee------
Q 013681 143 TLNFALDEIARILPG-------S------EFASVRAGVEMALIDAVANSIDIPLWRLFG--GA-SNSLSTAITI------ 200 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g-------~------~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg--g~-~~~ip~~~~i------ 200 (438)
+++.+|+.|++.+.+ . ...++++|||+|||||+||..|+|||+||| |. ++++|+|.+.
T Consensus 76 ~ie~i~~~~~~~~~~~~~g~~G~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLG~~G~~r~~v~~y~~~~~~gd~ 155 (450)
T 3mzn_A 76 EVKQVLSRARGLLAQGGPEERGRQTFDLRVAVHVITAIESALFDLFGQALGMPVADLLGQYGRQRDEVEALGYLFLLGDP 155 (450)
T ss_dssp GHHHHHHHHHHHHGGGCCCCCCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTCBGGGGSTTTCCCCSEEEBCEEEECBCCG
T ss_pred hHHHHHHHHHHHhhcccCCCcccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCcCceEEeeeeecccccc
Confidence 999999999876321 1 246899999999999999999999999999 54 7899987642
Q ss_pred -----------------------CCCCHHHHHHHHHHHhh-cCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCC
Q 013681 201 -----------------------PAVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDAN 255 (438)
Q Consensus 201 -----------------------~~~~~~~~~~~~~~~~~-~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN 255 (438)
+..+++++.++++++++ +||++||+|+|. +.++|++++++||+.+|++.|+||||
T Consensus 156 ~~t~~~~~s~~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~pd~~L~vDaN 235 (450)
T 3mzn_A 156 DKTDLPYPRVADPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVLRGEEEADCIRALHEAFPEARLALDPN 235 (450)
T ss_dssp GGSSSCCCCCSSCCSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred ccccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 13579999999999887 699999999996 78999999999999889999999999
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEecCCCCCC----hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d----~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
++|++++|++++++|+++ + .|||||++++| +++|++|++ ++++|||+||++.+..+++++++.+++|++
T Consensus 236 ~~w~~~~A~~~~~~L~~~-i--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~di~ 308 (450)
T 3mzn_A 236 GAWKLDEAVRVLEPIKHL-L--SYAEDPCGQEGGFSGRETMAEFKK----RTGLPTATNMIATDYKQLQYAVQLNSVDIP 308 (450)
T ss_dssp TCBCHHHHHHHHGGGGGG-C--SEEESSBCCBTTBCHHHHHHHHHH----HHCCCEEESSSSSSHHHHHHHHHHTCCSEE
T ss_pred CCCCHHHHHHHHHHhhhc-c--ceeeCCCCcccccchHHHHHHHHH----hcCCCEEeCCccCCHHHHHHHHHcCCCCEE
Confidence 999999999999999998 6 49999999998 689999986 689999999999999999999999999999
Q ss_pred EecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccc--cCCCCCceeeeCcE
Q 013681 332 NIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLS--EDPFVGGCEVSGAI 408 (438)
Q Consensus 332 ~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~--~~~~~~~~~~~~G~ 408 (438)
|+|+ ++| ++++++++++|+++|+++++|++.+++|+++|++|++++++|. +.+++.++... .+++.+++.++||+
T Consensus 309 ~~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~I~~aA~~hlaaa~p~~-~~~~d~~~~~~~~~~l~~~~~~~~~G~ 386 (450)
T 3mzn_A 309 LADC-HFWTMQGAVAVGELCNEWGMTWGSHSNNHFDISLAMMTHVAAACPGE-ITAIDTHWIWQDGQRITREPFQIRDGK 386 (450)
T ss_dssp BCCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHTCCSC-CCCBCCCHHHHTTCCSBSSCCCCBTTE
T ss_pred EecC-ccCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-chhhccccccccccccccCCCeEECCE
Confidence 9998 677 9999999999999999999999999999999999999999986 45666654322 35677788899999
Q ss_pred EecCCCCCccceeChhhhhhcc
Q 013681 409 YNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 409 ~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
+.+|++||||+++|+++|++|.
T Consensus 387 i~vp~~PGLGveld~~~l~~~~ 408 (450)
T 3mzn_A 387 LTVPKTPGLGIELDDDKLMEAH 408 (450)
T ss_dssp EECCCSSBTSCCBCHHHHHHHH
T ss_pred EECCCCCcCCCccCHHHHHHHH
Confidence 9999999999999999999976
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-64 Score=515.98 Aligned_cols=351 Identities=15% Similarity=0.191 Sum_probs=303.5
Q ss_pred eeeEEEEEEEEEEeeccC----------------CcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHH
Q 013681 64 WVDVQRAEGRELNVALSA----------------PLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALV 127 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~----------------p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~ 127 (438)
.|||++|+.+.+..+... .+..+.++++.++.++|+|+|++|++||||+.+.+ . ....
T Consensus 22 ~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~~----~--~~~~ 95 (412)
T 3stp_A 22 SMKIKSVRTRVWTWKGPTVPPQGNFCTNASDALWMKGDAMSSFRFHQWLTCEVETEDGTIGIGNAALAP----S--VVKK 95 (412)
T ss_dssp -CCEEEEEEEEEEECSCCCCCCSSSCCCGGGGSCCCSCTTTTTCCCEEEEEEEEETTSCEEEEEECSSH----H--HHHH
T ss_pred ccEEEEEEEEEEeccCCCCCCCCCCCCCchhccCCCCCcceEEEeccEEEEEEEECCCCEEEEeccCCH----H--HHHH
Confidence 489999999998763211 23356677888889999999999999999996542 1 1223
Q ss_pred HHHH-HhhHhcCCCCCCHHHHHHHHHHHCC----CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeee-
Q 013681 128 KVRE-ACQFLRQSPPTTLNFALDEIARILP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI- 200 (438)
Q Consensus 128 ~~~~-i~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i- 200 (438)
.+++ +.|.|+|+++.+++.+|+.|++... +...+++++|||||||||+||..|+|||+||||. ++++|+|.++
T Consensus 96 ~i~~~l~p~LiG~dp~~~e~l~~~~~~~~~~~g~~g~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~s~~ 175 (412)
T 3stp_A 96 VIDDWYAPLVIGEDPFDYAYIWEKMYRRSHAWGRKGIGMTAISAIDIAIWDLMGKLVGKPVFKLLGGRTKDRIPVYYSKL 175 (412)
T ss_dssp HHHHTTHHHHTTSCGGGHHHHHHHHHHHTHHHHSSTHHHHHHHHHHHHHHHHHHHHTTCBHHHHHTCCSSSSEEEEEECC
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCHHHhcCCCCCceEEEEEEec
Confidence 3455 7899999999999999999987531 2235689999999999999999999999999997 7899999984
Q ss_pred CCCCHHHHHHHHHHHhhcCCcEEEEecCCC-------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhh
Q 013681 201 PAVSPAEASELASKYCKLGFSTLKLNVGRN-------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLND 272 (438)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d-------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~ 272 (438)
...+++++.+.+++++++||++||+|+|.+ +++|++++++||+ +++++.|+||+|++|++++|++++++|++
T Consensus 176 ~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~ 255 (412)
T 3stp_A 176 YAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAP 255 (412)
T ss_dssp CSCCHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 557899999999999999999999999863 5899999999999 57999999999999999999999999999
Q ss_pred CCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHH
Q 013681 273 MGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATR 351 (438)
Q Consensus 273 ~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~ 351 (438)
+++ .|||||++++|++++++|++ ++++||++||++.++.+++++++.+++|++|+|++++| ++++++++++|+
T Consensus 256 ~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~~~GGit~a~kia~~A~ 329 (412)
T 3stp_A 256 YEP--RWLEEPVIADDVAGYAELNA----MNIVPISGGEHEFSVIGCAELINRKAVSVLQYDTNRVGGITAAQKINAIAE 329 (412)
T ss_dssp GCC--SEEECCSCTTCHHHHHHHHH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHH
T ss_pred cCC--CEEECCCCcccHHHHHHHHh----CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecChhhcCCHHHHHHHHHHHH
Confidence 997 49999999999999999986 68999999999999999999999999999999999997 999999999999
Q ss_pred HcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecC------CCcccccCCCCCceeeeCcEEecCCC-CCccceeChh
Q 013681 352 KSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN------TPFLLSEDPFVGGCEVSGAIYNFTNA-RGQGGFLKWT 424 (438)
Q Consensus 352 ~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~------~pl~~~~~~~~~~~~~~~G~~~~p~~-pGlGv~ld~~ 424 (438)
++|+++++|+ +.+|++|++++.++..+.|+. .+..+.++++.+++.++||++.+|++ ||||+++|++
T Consensus 330 a~gi~v~~h~------~~aa~~hlaaA~~~~~~~e~~~~~d~~~~~~l~~~~~~~~~~~~~G~i~vp~~~PGlGveld~~ 403 (412)
T 3stp_A 330 AAQIPVIPHA------GQMHNYHLTMANTNCPISEYFPVFDVEVGNELFYYIFEGDPEAVDGYLQLDDDLPGLGIAISDK 403 (412)
T ss_dssp HHTCCBCCSS------CSHHHHHHHHTCTTCCCEEECCCCSSSSSTTTHHHHEECCCCCBTTEECCCSSSCBTSCEECCT
T ss_pred HcCCEEEecc------HHHHHHHHHHhCCCCceEEecccccccccchhhhhhccCCCcccCCEEEcCCCCCcccccCCHH
Confidence 9999999998 357899999888887665543 22233444566778889999999999 9999999999
Q ss_pred hhhhcccc
Q 013681 425 IVSCTQVD 432 (438)
Q Consensus 425 ~l~~~~~~ 432 (438)
++++|++.
T Consensus 404 ~l~~~~~~ 411 (412)
T 3stp_A 404 HLQHFDIT 411 (412)
T ss_dssp TGGGEEEE
T ss_pred HHHhcccc
Confidence 99999864
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-64 Score=518.55 Aligned_cols=360 Identities=18% Similarity=0.189 Sum_probs=298.2
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCe--eEeeeeEEEEEEEEcC--CcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLS--SVENVENVAIRVELSN--GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQS 139 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~--~~~~~~~~lV~v~t~~--G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~ 139 (438)
.|||++|+++.+++|++.|+..+.+ +....+.++|+|+||+ |++||||+.+... +.+. ....++.+.|.|+|+
T Consensus 4 ~mkI~~i~~~~v~~p~~~~~~~s~~~~~~~~~~~~~V~i~Td~~dG~~G~Ge~~~~g~-~~~~--~~~~i~~l~~~liG~ 80 (441)
T 4a35_A 4 RGRISRLSVRDVRFPTSLGGHGADAMHTDPDYSAAYVVIETDAEDGIKGCGITFTLGK-GTEV--VVCAVNALAHHVLNK 80 (441)
T ss_dssp CCBEEEEEEEEEECCGGGTTCCCCSSCSSCCCEEEEEEEEESSCSCCCEEEEEEECST-THHH--HHHHHHHHGGGTTTC
T ss_pred CCEEEEEEEEEEEecCCCCCCCccceeccCcceEEEEEEEECCCCCCEEEEeeeCCCC-ChHH--HHHHHHHHHHHhCCC
Confidence 4899999999999999988776543 3456789999999997 9999999987532 1111 223346789999999
Q ss_pred CCCCHHHHHHHHHHHC--------CCC---hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCC-C---------------
Q 013681 140 PPTTLNFALDEIARIL--------PGS---EFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-N--------------- 192 (438)
Q Consensus 140 ~~~~~~~~~~~l~~~~--------~g~---~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~-~--------------- 192 (438)
++.+++.+|+.+.+.+ .|. ...+|++|||+|||||+||..|+|||+||||.. +
T Consensus 81 d~~~i~~~~~~~~~~l~~~~~~~~~g~~~g~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~r~~i~~~~~~~y~~d~~ 160 (441)
T 4a35_A 81 DLKDIVGDFRGFYRQLTSDGQLRWIGPEKGVVHLATAAVLNAVWDLWAKQEGKPVWKLLVDMDPRMLVSCIDFRYITDVL 160 (441)
T ss_dssp BHHHHHTTHHHHHHHHHSCTTGGGGCSSSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHSCHHHHHTTCCCTTTTTTC
T ss_pred CHHHHHHHHHHHHHHHhhccceeecCCCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcccceeccccccccccc
Confidence 9999865555444422 121 346799999999999999999999999999963 2
Q ss_pred --------------------------ceeeeeee--C-CCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh
Q 013681 193 --------------------------SLSTAITI--P-AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA 243 (438)
Q Consensus 193 --------------------------~ip~~~~i--~-~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~ 243 (438)
.+|.|.+. + ..+++++.+.+++++++||++||+|+|.++++|++++++||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~~KlKvG~~~~~d~~~v~avR~ 240 (441)
T 4a35_A 161 TEEDALEILQKGQIGKKEREKQMLAQGYPAYTTSCAWLGYSDDTLKQLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRD 240 (441)
T ss_dssp CHHHHHHHHHHTTTTHHHHHHHHHHHCEEEEECTTCCTTCCHHHHHHHHHHHHHTTCCEEEEECSSCHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhcccccchhhhhhcccCcceEEeccccCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 26777763 1 248999999999999999999999999999999999999999
Q ss_pred -hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHH
Q 013681 244 -VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322 (438)
Q Consensus 244 -~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~l 322 (438)
.+|++.|+||||++|++++|++++++|+++++ .|||||++++|++++++|++.++ .+++|||+||++.+..+++++
T Consensus 241 a~G~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~--~~iEeP~~~~d~~~~~~l~~~l~-~~~iPIa~gE~~~~~~~~~~~ 317 (441)
T 4a35_A 241 MIGPEKTLMMDANQRWDVPEAVEWMSKLAKFKP--LWIEEPTSPDDILGHATISKALV-PLGIGIATGEQCHNRVIFKQL 317 (441)
T ss_dssp HHCTTSEEEEECTTCCCHHHHHHHHHHHGGGCC--SEEECCSCTTCHHHHHHHHHHHG-GGTCEEEECTTCCSHHHHHHH
T ss_pred HhCCCCeEEEECCCCCCHHHHHHHHHhhcccCc--cEEeCCCCcccHHHHHHHHHhcc-CCCCCEEeCCccccHHHHHHH
Confidence 48999999999999999999999999999987 59999999999999999986221 278999999999999999999
Q ss_pred HHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHH-HHHHh-------hcCCcceeecCCCccc
Q 013681 323 MQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFA-LHLAA-------GLGCIKYVNLNTPFLL 393 (438)
Q Consensus 323 l~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~-~hla~-------al~~~~~~e~~~pl~~ 393 (438)
++.+++|++|+|++++| ++++++++++|+++|+++++|+ +++|++++ .|++. +..+..++|+..+
T Consensus 318 l~~~a~div~~d~~~~GGit~~~kia~lA~~~gv~v~~H~---~~ig~aa~~~hl~~~~~~~l~~~~~~~~~E~~~~--- 391 (441)
T 4a35_A 318 LQAKALQFLQIDSCRLGSVNENLSVLLMAKKFEIPVCPHA---GGVGLCELVQHLIIFDYISVSASLENRVCEYVDH--- 391 (441)
T ss_dssp HHTTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCCBCCCC---CTTTHHHHHHHHHHHHHHHTSCCCTTCCEEECCS---
T ss_pred HHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEeC---ChHHHHHHHHHHhhhhhcccccCcccceeeccch---
Confidence 99999999999999998 9999999999999999999986 46777654 35431 2233345565332
Q ss_pred ccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccccc
Q 013681 394 SEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCCH 435 (438)
Q Consensus 394 ~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~~ 435 (438)
..+.+.+++.++||++.+|++||||+++|++++++|+++..|
T Consensus 392 ~~~~~~~p~~~~dG~i~vp~~PGLGveld~~~l~~~~~~~~~ 433 (441)
T 4a35_A 392 LHEHFKYPVMIQRASYMPPKDPGYSTEMKEESVKKHQYPDGE 433 (441)
T ss_dssp SGGGBSSCCEESSSEEECCCSSBCSCCBCHHHHHHHBTTTSH
T ss_pred hhhcccCCceeeCCEEECCCCCcCCcccCHHHHHhccCCCCc
Confidence 234677788899999999999999999999999999987664
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-63 Score=507.12 Aligned_cols=352 Identities=18% Similarity=0.190 Sum_probs=305.5
Q ss_pred ceeeEEEEEEEEEEeeccCCcccCCe------eEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHh
Q 013681 63 FWVDVQRAEGRELNVALSAPLSLGLS------SVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFL 136 (438)
Q Consensus 63 ~~~~I~~i~~~~~~~pl~~p~~~s~~------~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l 136 (438)
-.|||++++++.+++|++.||.++.+ +.+.++.++|+|+|++|++|||||. .+.++.+. ....++.++|.|
T Consensus 11 ~~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~-~~~~~~~~--~~~~i~~l~~~l 87 (393)
T 2og9_A 11 PSDRITWVRISSCYLPLATPISDAKVLTGRQKPMTEIAILFAEIETAGGHQGLGFSY-SKRAGGPG--QFAHAREIAPAL 87 (393)
T ss_dssp CCCCEEEEEEEEEEEECSSCCC------------CEEEEEEEEEEETTSCEEEEEEE-EESTTHHH--HHHHHHHHGGGG
T ss_pred CCCeEeEEEEEEEeccCCCccccccccccccCCcCCccEEEEEEEECCCCEEEEEec-CcccchHH--HHHHHHHHHHHH
Confidence 34999999999999999999999976 6788999999999999999999993 33333321 222345689999
Q ss_pred cCCCCCCHHHHHHHHHHHC--CC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeC--CC-CHHHHH
Q 013681 137 RQSPPTTLNFALDEIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIP--AV-SPAEAS 209 (438)
Q Consensus 137 ~g~~~~~~~~~~~~l~~~~--~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~--~~-~~~~~~ 209 (438)
.|+++.+++.+|+.|.+.. .+ ...+++++|||+||||++||..|+|||+||||.++++|+|.+++ +. +++++.
T Consensus 88 ~G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~llGg~~~~vp~y~~~g~~~~~~~e~~~ 167 (393)
T 2og9_A 88 IGEDPSDIAKLWDKLCWAGASAGRSGLSTQAIGAFDVALWDLKAKRAGLSLAKLLGSYRDSVRCYNTSGGFLHTPIDQLM 167 (393)
T ss_dssp TTSCTTCHHHHHHHHHHTTGGGCSSSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHCCSCSEEEEEBCTTCCTTSCHHHHH
T ss_pred cCCChhhHHHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCceEEEEECCCcCCCCHHHHH
Confidence 9999999999999998742 22 23568999999999999999999999999999988999998853 24 899999
Q ss_pred HHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCC
Q 013681 210 ELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRD 287 (438)
Q Consensus 210 ~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~ 287 (438)
+.+++++++||+++|+|+|. +++.|++++++||+. ++++.|+||+|++|++++|++++++|+++++ .|||||++++
T Consensus 168 ~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iE~P~~~~ 245 (393)
T 2og9_A 168 VNASASIERGIGGIKLKVGQPDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNL--VWIEEPLDAY 245 (393)
T ss_dssp HHHHHHHHTTCCCEEEECCCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCC--SCEECCSCTT
T ss_pred HHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCC--CEEECCCCcc
Confidence 99999999999999999995 789999999999995 8999999999999999999999999999997 4999999999
Q ss_pred ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 288 DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 288 d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
|++++++|++ ++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++++|++.+
T Consensus 246 ~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~-- 319 (393)
T 2og9_A 246 DHEGHAALAL----QFDTPIATGEMLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHAGLMLAPHFAME-- 319 (393)
T ss_dssp CHHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCCSCHH--
T ss_pred cHHHHHHHHH----hCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHHHcCCEEeccCccH--
Confidence 9999999986 68999999999999999999999999999999999997 9999999999999999999998754
Q ss_pred HHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 367 LATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 367 ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
.++|+++++++..+.|+.. + ..+++.+++.++||++.+|++||||+++|+++ ++|+++.
T Consensus 320 ----~~~~laaa~~~~~~~e~~~-~--~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~-~~~~~~~ 378 (393)
T 2og9_A 320 ----LHVHLAAAYPREPWVEHFE-W--LEPLFNERIEIRDGRMLVPTRPGLGLTLSGQV-KAWTREE 378 (393)
T ss_dssp ----HHHHHHHTSSSCCEEECCC-T--TGGGBSCCCCEETTEEECCCSSBTCCCBCTHH-HHHEEEE
T ss_pred ----HHHHHHhhCCCCceeeccc-c--hHHHccCCCeeeCCEEECCCCCCCCeeeCHHH-HHhccCH
Confidence 3679999999998888642 2 23466677889999999999999999999999 9998643
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-63 Score=515.72 Aligned_cols=350 Identities=16% Similarity=0.165 Sum_probs=301.5
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeE-eeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPT 142 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~-~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~ 142 (438)
.++|++++++++..+ ..|+.+..|.. +.....+|+|+|++|++||||+... +. ....++.+.|.|+|+++.
T Consensus 8 ~~~It~v~v~~v~~~-d~~~~~~~g~h~~~~~~~iV~v~td~Gi~G~GE~~~~-----~~--v~~~i~~l~p~LiG~dp~ 79 (455)
T 3pfr_A 8 VPVITDMKVIPVAGH-DSMLMNVGGAHSPYFTRNIVILTDNSGHTGVGEAPGG-----AT--IENALTEAIPHVVGRPIS 79 (455)
T ss_dssp CCBEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECS-----HH--HHHHHHHHGGGTTTCBGG
T ss_pred CCEEEEEEEEEeccC-CccccccccCCCCcceEEEEEEEECCCCEEEEeCCCc-----HH--HHHHHHHHHHHhcCCChh
Confidence 379999999999999 77777666653 4567889999999999999998631 22 223356789999999999
Q ss_pred CHHHHHHHHHH--HCCCC-----h------hhHHHHHHHHHHHHHHHHHCCCCHHHHhC-CC-CCceeeeeeeC------
Q 013681 143 TLNFALDEIAR--ILPGS-----E------FASVRAGVEMALIDAVANSIDIPLWRLFG-GA-SNSLSTAITIP------ 201 (438)
Q Consensus 143 ~~~~~~~~l~~--~~~g~-----~------~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg-g~-~~~ip~~~~i~------ 201 (438)
+++.+|+.|++ .+.+. . ..++++|||+|||||+||..|+|||+||| |. ++++|+|.+..
T Consensus 80 ~ie~i~~~~~~~~~~~~~~~g~~G~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~r~~v~~y~~~~~~gd~~ 159 (455)
T 3pfr_A 80 ILNKIVNDMHNGYLDADYDTFGKGAWTFELRVNAVAALEAALLDLMGQFLGVPVAELLGPGKQRDEVTVLGYLFYVGDDK 159 (455)
T ss_dssp GHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHHHHHHHTSBGGGGSTTSCCCSEEEBCEEECCBCCGG
T ss_pred HHHHHHHHHHhhccccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcCCeEEEeeeeccccccc
Confidence 99999999987 44211 0 16799999999999999999999999999 65 78999876421
Q ss_pred -----------------------CCCHHHHHHHHHHHhh-cCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCC
Q 013681 202 -----------------------AVSPAEASELASKYCK-LGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANE 256 (438)
Q Consensus 202 -----------------------~~~~~~~~~~~~~~~~-~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~ 256 (438)
..+++++.++++++++ +||++||+|+|. +.++|++++++||+.+|++.|+||||+
T Consensus 160 ~~~~~~~~s~~~~~~w~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~~~~~Di~~v~avRea~pd~~L~vDaN~ 239 (455)
T 3pfr_A 160 ITDLPYQQPVTGKHEWYDIRRKKAMDTQAVIELAAASKDRYGFKDFKLKGGVFEGSKEIDTVIELKKHFPDARITLDPNG 239 (455)
T ss_dssp GSCSCCCCCCCSSCTHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHCTTCCEEEECTT
T ss_pred cccccccccccccccccccccccCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCeEeecCCC
Confidence 2579999999998887 699999999996 789999999999998899999999999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEecCCCCCC----hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEE
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD----WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVN 332 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d----~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~ 332 (438)
+|++++|++++++|+++ + .|||||++++| +++|++|++ ++++|||+||++.+..+++++++.+++|++|
T Consensus 240 ~w~~~~A~~~~~~L~~~-l--~~iEeP~~~~d~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~di~~ 312 (455)
T 3pfr_A 240 CWSLDEAIQLCKGLNDV-L--TYAEDPCIGENGYSGREIMAEFRR----RTGIPTATNMIATNWREMCHAIMLQSVDIPL 312 (455)
T ss_dssp BSCHHHHHHHHTTCTTT-C--SEEESCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSCCSHHHHHHHHHHTCCSEEB
T ss_pred CCCHHHHHHHHHhhccc-c--eeeecCCChhhccchHHHHHHHHh----cCCCCEEeCCCcCCHHHHHHHHHcCCCCEEE
Confidence 99999999999999998 6 59999999998 689999986 6899999999999999999999999999999
Q ss_pred ecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccc---cCCCCCceeeeCcE
Q 013681 333 IKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLS---EDPFVGGCEVSGAI 408 (438)
Q Consensus 333 lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~---~~~~~~~~~~~~G~ 408 (438)
+|+ ++| ++++++++++|+++|+++++|++.+++|+++|++|++++++|. +.+++.++... .+++.+++.++||+
T Consensus 313 ~d~-~~GGit~a~kia~lA~a~gv~~~~h~~~~~~i~~aa~~hlaaa~p~~-~~~~d~~~~~~~~~~~l~~~p~~~~dG~ 390 (455)
T 3pfr_A 313 ADP-HFWTLTGASRVAQLCNEWGLTWGCHSNNHFDISLAMFSHVGAAAPGN-PTALDTHWIWQEGDFYLTKNPLEIKDGK 390 (455)
T ss_dssp CCH-HHHCHHHHHHHHHHHHHTTCCCBCCCCSCCHHHHHHHHHHHHHCCSC-CCCBCCCGGGTTTTCCSBSSCCCEETTE
T ss_pred ecC-CcCCHHHHHHHHHHHHHcCCEEEecCCcccHHHHHHHHHHHHhCCCc-chhhccccccccchhhccCCCCeEECCE
Confidence 998 676 9999999999999999999999999999999999999999986 33444432211 35677788899999
Q ss_pred EecCCCCCccceeChhhhhhcc
Q 013681 409 YNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 409 ~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
+.+|++||||+|+|+++|++|.
T Consensus 391 i~vp~~PGLGveld~~~l~~~~ 412 (455)
T 3pfr_A 391 IKLNDKPGLGIELNMDNVLKAH 412 (455)
T ss_dssp EECCSCSBTCCCBCHHHHHHHH
T ss_pred EeCCCCCcCCcccCHHHHHHHH
Confidence 9999999999999999999976
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-63 Score=507.11 Aligned_cols=340 Identities=15% Similarity=0.170 Sum_probs=289.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHH-HHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVR-EACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~-~i~~~l~g~~~~~ 143 (438)
|||++|+.+.+. ..++.++|+|+||+|++||||+.. ..+ .....+. .+.|.|+|+++.+
T Consensus 4 mkIt~v~~~~~~--------------~~~~~~~V~v~td~G~~G~GE~~~----~~~--~~~~~i~~~l~p~liG~dp~~ 63 (410)
T 3dip_A 4 PRITALRTIRLP--------------ERPKLIWVEVETEDGLTGLGETFR----GAQ--AVEAVLHEQTAPAIIGRAAEN 63 (410)
T ss_dssp CBEEEEEEEEET--------------TEEEEEEEEEEETTSCEEEEEEES----CHH--HHHHHHHHTHHHHHTTSBTTC
T ss_pred CeEEEEEEEEEC--------------CCCCEEEEEEEECCCCEEEEeCCC----ChH--HHHHHHHHHHHHHhcCCCcch
Confidence 899999987653 135789999999999999999532 122 1222344 3889999999999
Q ss_pred HHHHHHHHHHHCC----CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCC----------------
Q 013681 144 LNFALDEIARILP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPA---------------- 202 (438)
Q Consensus 144 ~~~~~~~l~~~~~----g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~---------------- 202 (438)
++.+|+.|++... +....++++|||||||||+||..|+|||+||||. ++++|+|.++..
T Consensus 64 ~e~~~~~~~~~~~~~~~~~~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~yas~~~~~g~~~~~~~~~~~~~ 143 (410)
T 3dip_A 64 ITSISSELLNPYVGFGSSSAEVRAASAVDIALWDLAGQRAGVPLHVALGGAARDRVPVYATCAGYDFNTSLGGRRSIGSA 143 (410)
T ss_dssp HHHHHHHHTCCSSSCSSCCHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEEEECTTTC-------------
T ss_pred HHHHHHHHHHHHHhhCCccHHHHHHHHHHHHHHHHhHhHcCCcHHHHhCCCcCCceeEEEeccccccccccccccccccc
Confidence 9999999976431 1234679999999999999999999999999996 789999965421
Q ss_pred -------CCHHH----HHHHHHHHhhcCCcEEEE--------ecCC-----CchHHHHHHHHHHhh-CCCcEEEEeCCCC
Q 013681 203 -------VSPAE----ASELASKYCKLGFSTLKL--------NVGR-----NITADFDVLQAIHAV-HPHCSFILDANEG 257 (438)
Q Consensus 203 -------~~~~~----~~~~~~~~~~~Gf~~iKl--------KvG~-----d~~~di~~l~aiR~~-~~~~~L~vDAN~~ 257 (438)
.++++ ..+.+++++++||++||+ |+|. ++++|++++++||+. ++++.|+||+|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~ 223 (410)
T 3dip_A 144 ELSTGPYDDQVAFMRDAGVLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSL 223 (410)
T ss_dssp ---------------CHHHHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTC
T ss_pred ccccccccchhhhhhhHHHHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCC
Confidence 12222 245577888999999999 9985 367899999999995 7899999999999
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEecC-CCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQP-VHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqP-l~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
|++++|++++++|+++++ .||||| ++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++
T Consensus 224 ~~~~~A~~~~~~L~~~~i--~~iEqP~~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~ 297 (410)
T 3dip_A 224 WGTHAAARICNALADYGV--LWVEDPIAKMDNIPAVADLRR----QTRAPICGGENLAGTRRFHEMLCADAIDFVMLDLT 297 (410)
T ss_dssp BCHHHHHHHHHHGGGGTC--SEEECCBSCTTCHHHHHHHHH----HHCCCEEECTTCCSHHHHHHHHHTTCCSEEEECTT
T ss_pred CCHHHHHHHHHHHHhcCC--CEEECCCCCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCeEeeccc
Confidence 999999999999999997 599999 89999999999986 68999999999999999999999999999999999
Q ss_pred cch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeec-C-CCcccccCCCCCceeeeCcEEecCC
Q 013681 337 KFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL-N-TPFLLSEDPFVGGCEVSGAIYNFTN 413 (438)
Q Consensus 337 ~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~-~-~pl~~~~~~~~~~~~~~~G~~~~p~ 413 (438)
++| ++++++++++|+++|+++++|++ |+|+++|++|++++++|..+.|+ + ....+.++++.+++.++||++.+|+
T Consensus 298 ~~GGit~~~~ia~~A~~~gi~~~~h~~--s~i~~aa~~hlaaa~pn~~~~e~~~~~~~~~~~~~~~~~~~~~~G~i~~p~ 375 (410)
T 3dip_A 298 WCGGLSEGRKIAALAETHARPLAPHXT--GPVALMAGLHLALHAPTAIFQEVVRASLATWYADLVDHLPVIQEGIALAPT 375 (410)
T ss_dssp TSSCHHHHHHHHHHHHHTTCCEEECSS--CHHHHHHHHHHHHHCTTBCCEEEECTTSCCTHHHHBSCCCCEETTEEECCC
T ss_pred ccCCHHHHHHHHHHHHHcCCEEeeeCc--cHHHHHHHHHHHHhCCCCeEEEeccccCchhHHhhcCCCCcccCCEEECCC
Confidence 997 99999999999999999999998 99999999999999999988874 3 1222335567778889999999999
Q ss_pred CCCccceeChhhhhhcccc
Q 013681 414 ARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 414 ~pGlGv~ld~~~l~~~~~~ 432 (438)
+||||+++|++++++|++.
T Consensus 376 ~PGlGve~d~~~l~~~~~~ 394 (410)
T 3dip_A 376 RPGLGTALLPHVRKIAGAV 394 (410)
T ss_dssp SSBTSCCBCTTGGGSTTCE
T ss_pred CCCCCcccCHHHHhccCce
Confidence 9999999999999999854
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-63 Score=506.88 Aligned_cols=352 Identities=18% Similarity=0.215 Sum_probs=309.5
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCe------eEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhc
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLS------SVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR 137 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~------~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~ 137 (438)
.|||++++++.+++|++.||.++.+ +.+.++.++|+|+|++|++||||+. .+.++.+. ....++.++|.|.
T Consensus 25 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~-~~~~~~~~--~~~~~~~l~p~l~ 101 (398)
T 2pp0_A 25 GDRIEWVKLSLAFLPLATPVSDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSY-SKRAGGQG--IYAHAKEIADNLL 101 (398)
T ss_dssp SCCEEEEEEEEEEEEEEEEECCHHHHTTSSCCEEEEEEEEEEEEETTSCEEEEEEE-ESSTTHHH--HHHHHHHHGGGGT
T ss_pred CCeEEEEEEEEEeccCCCcccccccccccccccCCCcEEEEEEEECCCCEEEEEec-CccchHHH--HHHHHHHHHHHHc
Confidence 3999999999999999999999865 7888999999999999999999994 33333321 2223456899999
Q ss_pred CCCCCCHHHHHHHHHHHC--CCC--hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC--C-CHHHHHH
Q 013681 138 QSPPTTLNFALDEIARIL--PGS--EFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--V-SPAEASE 210 (438)
Q Consensus 138 g~~~~~~~~~~~~l~~~~--~g~--~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~-~~~~~~~ 210 (438)
|+++.+++.+|+.|.+.. .++ ..+++++|||+||||++||..|+|||+||||.++++|+|.+++. . +++++.+
T Consensus 102 G~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~vp~y~~~g~~~~~~~e~~~~ 181 (398)
T 2pp0_A 102 GEDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLGAHRDSVQCYNTSGGFLHTPLDQVLK 181 (398)
T ss_dssp TSCTTCHHHHHHHHHHHTGGGCSSTHHHHHHHHHHHHHHHHHHHHTTSBHHHHHCCSCSEEEEEECTTSCTTSCHHHHHH
T ss_pred CCCchhHHHHHHHHHHhhcccCCchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEecCCcCCCCHHHHHH
Confidence 999999999999998752 222 34689999999999999999999999999999889999988532 4 8999999
Q ss_pred HHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCC
Q 013681 211 LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD 288 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d 288 (438)
.+++++++||+.+|+|+|. +++.|++++++||+. ++++.|+||+|++|++++|+++++.|+++++ .|||||++++|
T Consensus 182 ~a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i--~~iEqP~~~~d 259 (398)
T 2pp0_A 182 NVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNL--IWIEEPLDAYD 259 (398)
T ss_dssp HHHHHHHTTCSCEEEECCCSCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTC--SCEECCSCTTC
T ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCC--ceeeCCCChhh
Confidence 9999999999999999995 789999999999995 8999999999999999999999999999997 49999999999
Q ss_pred hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhH
Q 013681 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRL 367 (438)
Q Consensus 289 ~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (438)
++++++|++ ++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|+++++|++.|+
T Consensus 260 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~gi~~~~h~~~~~-- 333 (398)
T 2pp0_A 260 IEGHAQLAA----ALDTPIATGEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPHFAMEV-- 333 (398)
T ss_dssp HHHHHHHHH----HCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCCSCHHH--
T ss_pred HHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEeecCccHH--
Confidence 999999986 58999999999999999999999999999999999997 99999999999999999999987543
Q ss_pred HHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccccc
Q 013681 368 ATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCC 434 (438)
Q Consensus 368 g~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~ 434 (438)
++|+++++++..+.|+.. +.++++.+++.++||++.+|++||||+++|++ +++|+++..
T Consensus 334 ----~~~laaa~~~~~~~e~~~---~~~~~~~~~~~~~~G~i~~p~~PGlGv~~d~~-~~~~~~~~~ 392 (398)
T 2pp0_A 334 ----HLHLSAAYPLEPWLEHFE---WLNPLFNEQLELRDGRMWISDRHGLGFTLSEQ-ARRWTQLTC 392 (398)
T ss_dssp ----HHHHHHTCSSCCCEEECS---TTGGGBSCCCEEETTEEECCSSSBTCCCBCHH-HHHTEEEEE
T ss_pred ----HHHHHhcCCCcceeeccc---chhhhccCCCeeeCCEEECCCCCCCCcccCHH-HHHhhhcHH
Confidence 689999999988887532 12346667888999999999999999999999 599987653
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-63 Score=502.64 Aligned_cols=340 Identities=21% Similarity=0.326 Sum_probs=287.2
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH-HHHhhHhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~i~~~l~g~~~~~ 143 (438)
|||++++.+.. ++.++|+|+||+|++||||+.+. +.+. ....+ +.+.|.|+|+++.+
T Consensus 23 mkIt~v~~~~~-----------------~~~~~V~v~Td~G~~G~GE~~~~---~~~~--~~~~i~~~l~p~LiG~d~~~ 80 (388)
T 3tcs_A 23 MKLKAIETFTN-----------------DAVGFVRVTTQDGAQGWGQVSTY---HADI--TCTVLHRQVAPWMLGQDITD 80 (388)
T ss_dssp CBEEEEEEEEC-----------------SSCEEEEEEETTSCEEEEECCSS---SHHH--HHHHHHHHTHHHHTTSBCTT
T ss_pred cEEEEEEEEEe-----------------CCeEEEEEEECCCCEEEEeccCC---ccHH--HHHHHHHHHHHHhCCCCccc
Confidence 99999998642 13589999999999999999743 2222 11223 45899999999999
Q ss_pred HHHHHHHHHHHC---CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCC--CCHHHHHHHHHH-Hhh
Q 013681 144 LNFALDEIARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPA--VSPAEASELASK-YCK 217 (438)
Q Consensus 144 ~~~~~~~l~~~~---~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~--~~~~~~~~~~~~-~~~ 217 (438)
++.+|+.|+... +|....++++|||+||||++||..|+|||+||||.++++|+|.+... .+++++.+++.+ ..+
T Consensus 81 ~e~l~~~~~~~~~~~~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3tcs_A 81 LDDLLDIVTEREHKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRDITPRDEAERLKRLRDT 160 (388)
T ss_dssp HHHHHHHHHHHTTTCCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCCEEEEEEEECCCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHhHcCCcHHHHhCCCCCceEEEEecCcCCCChHHHHHHHHHHHHh
Confidence 999999998643 23334578999999999999999999999999999889999987532 367766555544 458
Q ss_pred cCCcEEEEecCCC--------chHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCC
Q 013681 218 LGFSTLKLNVGRN--------ITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDD 288 (438)
Q Consensus 218 ~Gf~~iKlKvG~d--------~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d 288 (438)
+||++||+|+|.+ +++|++++++||+ .++++.|+||+|++|++++|++++++|+++++ .|||||++++|
T Consensus 161 ~Gf~~~K~KvG~~~~~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d 238 (388)
T 3tcs_A 161 QGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGF--CHFEEPCPYWE 238 (388)
T ss_dssp HCCCEEEEECSCTTCTTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTC--CEEECCSCTTC
T ss_pred cCCCEEEEccCCCcccccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCC--eEEECCCCccC
Confidence 9999999999953 3567899999999 58999999999999999999999999999997 49999999999
Q ss_pred hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhH
Q 013681 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRL 367 (438)
Q Consensus 289 ~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (438)
++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +++
T Consensus 239 ~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~a~kia~~A~~~gv~~~~h~~~-~~~ 313 (388)
T 3tcs_A 239 LAQTKQVTD----ALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGGICRTLRVVEMARAAGLPVTPHCAN-WSL 313 (388)
T ss_dssp HHHHHHHHH----HCSSCEEECTTCCCHHHHHHHHHHTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCCBCCCCCS-TTT
T ss_pred HHHHHHHHH----hcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCCC-cHH
Confidence 999999986 68999999999999999999999999999999999997 999999999999999999999974 568
Q ss_pred HHHHHHHHHhhcCCcc-eeec--CCC--cccccCCC-CCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 368 ATGFALHLAAGLGCIK-YVNL--NTP--FLLSEDPF-VGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 368 g~~a~~hla~al~~~~-~~e~--~~p--l~~~~~~~-~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+.+|++|++++++|.. ++|+ +++ .....+++ .+++.++||++.+|++||||+++|+++++++++..
T Consensus 314 ~~~a~~hl~aa~pn~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~G~i~vp~~PGLGveld~~~l~~~~~~~ 385 (388)
T 3tcs_A 314 VTLFTMHLLRAIPNAGKYLEFSIEGPDYYPWQEGLFVKTPYEIEDGHARVTDAPGWGVEISPEWLARSQYQS 385 (388)
T ss_dssp HHHHHHHHHTTCTTBCSCEEEECCCTTTCGGGTTCBSSCSCCCBTTEEEECSSSBTCCCBCHHHHHHSEEEE
T ss_pred HHHHHHHHHHhCCCccceeEeecCcccccchhhhhccCCCceeeCCEEECCCCCCCCCeECHHHHHhCcccc
Confidence 8889999999999973 5553 222 11234555 56678899999999999999999999999988653
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-63 Score=506.09 Aligned_cols=353 Identities=15% Similarity=0.235 Sum_probs=303.9
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++|+++.+.+|++.|++. ...++|+|+|++|++||||+++..+.+.+ .....++++.|.|+|+++.++
T Consensus 4 MkI~~i~~~~~~~p~~~p~~~-------~~~v~V~v~td~G~~G~Ge~a~~~g~~~~--~~~~~i~~l~p~liG~d~~~~ 74 (407)
T 2o56_A 4 MKITSVDIIDVANDFASATSK-------WRPVVVKINTDEGISGFGEVGLAYGVGAS--AGIGMAKDLSAIIIGMDPMNN 74 (407)
T ss_dssp CCEEEEEEEECCCCC-----C-------CCCEEEEEEETTSCEEEEEESCSSSSCHH--HHHHHHHHHHHHHTTSCTTCH
T ss_pred CEEEEEEEEEeccccCCCccc-------ceeEEEEEEeCCCCEEEEeeccCCCCchH--HHHHHHHHHHHHhCCCChHHH
Confidence 899999999999999998642 23589999999999999999433222222 223345568999999999999
Q ss_pred HHHHHHHHHHCCC-----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeee-e--CCC---------CHH
Q 013681 145 NFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT-I--PAV---------SPA 206 (438)
Q Consensus 145 ~~~~~~l~~~~~g-----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~-i--~~~---------~~~ 206 (438)
+.+|+.|.+...+ ...+++++|||+||||++||..|+|||+||||. ++++|+|.+ + +.. +++
T Consensus 75 ~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~~~~ 154 (407)
T 2o56_A 75 EAIWEKMLKKTFWGQGGGGIFSAAMSGIDIALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLTEPE 154 (407)
T ss_dssp HHHHHHHHHSSSGGGGCBHHHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCCSCSSEEEEEECGGGCCSTTCTTCCCCSHH
T ss_pred HHHHHHHHHhccccCCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCCCCeeeeeeeeccCCccccccccccCCHH
Confidence 9999999864321 124689999999999999999999999999997 689999976 5 334 899
Q ss_pred HHHHHHHHHhhcCCcEEEEec------CC-------------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHH
Q 013681 207 EASELASKYCKLGFSTLKLNV------GR-------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEV 266 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKv------G~-------------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~ 266 (438)
++.+.+++++++||+++|+|+ |. +++.|++++++||+ +++++.|++|+|++|++++|+++
T Consensus 155 ~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~ 234 (407)
T 2o56_A 155 QYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQF 234 (407)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 999999999999999999997 53 45789999999999 68999999999999999999999
Q ss_pred HHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHH
Q 013681 267 LGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQ 345 (438)
Q Consensus 267 l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~ 345 (438)
++.|+++++ .|||||++++|++++++|++ ++++||++||++.++.+++++++.+++|++++|++++| ++++++
T Consensus 235 ~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~ 308 (407)
T 2o56_A 235 GRMIEELGI--FYYEEPVMPLNPAQMKQVAD----KVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGITEVKK 308 (407)
T ss_dssp HHHHGGGCC--SCEECSSCSSSHHHHHHHHH----HCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHH
T ss_pred HHHHHhcCC--CEEeCCCChhhHHHHHHHHH----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHH
Confidence 999999997 49999999999999999986 68999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCC--cccccCCCCCceeeeCcEEecCCCCCccceeCh
Q 013681 346 IIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP--FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKW 423 (438)
Q Consensus 346 ~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~p--l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~ 423 (438)
++++|+++|+++++|++. |+||++|++|++++++|..++|+... ..+..+++.+++.++||++.+|++||||+++|+
T Consensus 309 i~~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~ 387 (407)
T 2o56_A 309 ICDMAHVYDKTVQIHVCG-GPISTAVALHMETAIPNFVIHELHRYALLEPNTQTCKYNYLPKNGMYEVPELPGIGQELTE 387 (407)
T ss_dssp HHHHHHTTTCEECCCCCS-CHHHHHHHHHHHHHCTTBCCEEEEGGGGSHHHHTTBSCCCCCBTTEECCCCSSBTSCCBCH
T ss_pred HHHHHHHcCCeEeecCCC-CHHHHHHHHHHHHhCCCceeEeeccccccccHHHhccCCceecCCEEECCCCCCCCceeCH
Confidence 999999999999999985 99999999999999999888876321 112456777788899999999999999999999
Q ss_pred hhhhhccccc
Q 013681 424 TIVSCTQVDC 433 (438)
Q Consensus 424 ~~l~~~~~~~ 433 (438)
+++++|++..
T Consensus 388 ~~l~~~~~~~ 397 (407)
T 2o56_A 388 ETMKKSPTIT 397 (407)
T ss_dssp HHHHHSCEEE
T ss_pred HHHHhccCCc
Confidence 9999998543
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-62 Score=501.52 Aligned_cols=354 Identities=16% Similarity=0.213 Sum_probs=306.3
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++|+++.+.+|++.+.... ...++|+|+|++|++||||+++..+.+.+ .....++++.|.|+|+++.++
T Consensus 3 MkI~~i~~~~~~~pl~~~~~~~------~~~v~V~v~td~G~~G~Ge~~~~~g~~~~--~~~~~i~~l~p~liG~d~~~~ 74 (410)
T 2gl5_A 3 LKITSIEVFDCELKKRDQTMSS------YNPVLIRVNTDSGLSGIGEVGLAYGAGAK--AGVGIIRDLAPLIVGEDPLNI 74 (410)
T ss_dssp CCEEEEEEEECCGGGTCGGGTT------CCCEEEEEEETTSCEEEEEESCSSSTTHH--HHHHHHHHHGGGTTTSCTTCH
T ss_pred ceEEEEEEEEecccccccCccc------ccceEEEEEeCCCCEEEEeecCcCCCChH--HHHHHHHHHHHHhCCCChHHH
Confidence 8999999999999987743110 12489999999999999999432222222 223345568999999999999
Q ss_pred HHHHHHHHHHCC----C-ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeee-eC--CC-------CHHHH
Q 013681 145 NFALDEIARILP----G-SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT-IP--AV-------SPAEA 208 (438)
Q Consensus 145 ~~~~~~l~~~~~----g-~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~-i~--~~-------~~~~~ 208 (438)
+.+|+.|.+... + ...+++++||||||||++||..|+|||+||||. ++++|+|.+ ++ .. +++++
T Consensus 75 ~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~~~~ 154 (410)
T 2gl5_A 75 EKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWGDKNHILVTPEEY 154 (410)
T ss_dssp HHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTSCSCSSEEEEEECGGGCCTTCCSCCCSHHHH
T ss_pred HHHHHHHHHhcccccCCchHHHhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceeEeEecccCCccccccccCCHHHH
Confidence 999999986432 1 124689999999999999999999999999996 688999987 65 34 89999
Q ss_pred HHHHHHHhhcCCcEEEEec------CC------------------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHH
Q 013681 209 SELASKYCKLGFSTLKLNV------GR------------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKv------G~------------------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A 263 (438)
.+.+++++++||+.+|+|+ |. +++.|++++++||+ +++++.|+||+|++|++++|
T Consensus 155 ~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a 234 (410)
T 2gl5_A 155 AEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLLGTNSA 234 (410)
T ss_dssp HHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHH
T ss_pred HHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence 9999999999999999997 53 35779999999999 68999999999999999999
Q ss_pred HHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHH
Q 013681 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~ 342 (438)
++++++|+++++ .|||||++++|++++++|++ ++++||++||++.++.+++++++.+++|++++|++++| +++
T Consensus 235 i~~~~~l~~~~i--~~iE~P~~~~~~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 308 (410)
T 2gl5_A 235 IQFAKAIEKYRI--FLYEEPIHPLNSDNMQKVSR----STTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGITE 308 (410)
T ss_dssp HHHHHHHGGGCE--EEEECSSCSSCHHHHHHHHH----HCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHHH
T ss_pred HHHHHHHHhcCC--CeEECCCChhhHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 999999999987 59999999999999999986 68999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCC--cccccCCCCCceeeeCcEEecCCCCCccce
Q 013681 343 TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP--FLLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (438)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~p--l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 420 (438)
+++++++|+++|+++++|++ +|+|+++|++|++++++|..++|+... ..+..+++.+++.++||++.+|++||||++
T Consensus 309 ~~~ia~~A~~~gi~~~~h~~-~s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~ 387 (410)
T 2gl5_A 309 GKKICDYANIYDTTVQVHVC-GGPVSTVAALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYYVAPEQPGLGQE 387 (410)
T ss_dssp HHHHHHHHHTTTCEECCCCC-SSHHHHHHHHHHHHHCTTBCCEEEETTTTCHHHHTTBSSCCCCBTTEECCCCSSBTSCC
T ss_pred HHHHHHHHHHcCCeEeecCC-CCHHHHHHHHHHHHhCCcceeeeeccccccchHHHhccCCceecCCEEECCCCCcCCcc
Confidence 99999999999999999998 699999999999999999888876321 113466777788899999999999999999
Q ss_pred eChhhhhhccccc
Q 013681 421 LKWTIVSCTQVDC 433 (438)
Q Consensus 421 ld~~~l~~~~~~~ 433 (438)
+|++++++|++..
T Consensus 388 ~d~~~l~~~~~~~ 400 (410)
T 2gl5_A 388 LNDEVVKEYLAYV 400 (410)
T ss_dssp BCHHHHTTTEEEE
T ss_pred cCHHHHHhccccc
Confidence 9999999998543
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-62 Score=498.67 Aligned_cols=348 Identities=16% Similarity=0.226 Sum_probs=303.4
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhh-HhcCCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ-FLRQSPPTT 143 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~-~l~g~~~~~ 143 (438)
|||++|+++.+. |. ++ ..++|+|+|++|++||||+.+. |..........++.+.| .|+|+++.+
T Consensus 3 mkI~~i~~~~v~-~~--~~----------~~v~V~v~td~G~~G~GE~~~~--~g~~~~~~~~~i~~l~~~~l~G~d~~~ 67 (392)
T 2poz_A 3 LKITGVNIYLLK-SG--RL----------HPVLVEISTDEGITGAGEAGIA--YGVGGTAAAGMIKDLSERFLIGKDPSR 67 (392)
T ss_dssp CCEEEEEEEECC-BT--TB----------CCEEEEEEETTSCCEEEEESCS--SSSCHHHHHHHHHHHHHHHTTTCCTTC
T ss_pred CeEEEEEEEEEe-cC--Cc----------cEEEEEEEECCCCEEEEeecCC--cCCchHHHHHHHHHhhHhhhcCCChhH
Confidence 899999999887 43 22 2699999999999999999864 21122223334567899 999999999
Q ss_pred HHHHHHHHHHHCCC----C-hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeee---eCCCCHHHHHHHHHH
Q 013681 144 LNFALDEIARILPG----S-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT---IPAVSPAEASELASK 214 (438)
Q Consensus 144 ~~~~~~~l~~~~~g----~-~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~---i~~~~~~~~~~~~~~ 214 (438)
++.+|+.|.+...+ . ..+++++|||+||||++||..|+|||+||||. ++++|+|.+ .+..+++++.+.+++
T Consensus 68 ~~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~~v~~y~~g~~~~~~~~~~~~~~a~~ 147 (392)
T 2poz_A 68 IEELWSTMYDHSFWAKNGGAIIFAGISAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADTPDEFARAVER 147 (392)
T ss_dssp HHHHHHHHHHHSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSCSEEEEEECSCCTTCCSHHHHHHHTHH
T ss_pred HHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeccccCCCCHHHHHHHHHH
Confidence 99999999875322 1 24689999999999999999999999999997 678999875 224689999999999
Q ss_pred HhhcCCcEEEEecC------------------CCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC
Q 013681 215 YCKLGFSTLKLNVG------------------RNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGV 275 (438)
Q Consensus 215 ~~~~Gf~~iKlKvG------------------~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l 275 (438)
++++||+.+|+|+| .+++.|++++++||+ +++++.|++|+|++|++++|++++++|+++++
T Consensus 148 ~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i 227 (392)
T 2poz_A 148 PLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDI 227 (392)
T ss_dssp HHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCE
T ss_pred HHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 99999999999998 245789999999999 68999999999999999999999999999987
Q ss_pred CCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcC
Q 013681 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSG 354 (438)
Q Consensus 276 ~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~g 354 (438)
.|||||++++|++++++|++ ++++||++||++.++.+++++++.+++|++++|++++| ++++++++++|+++|
T Consensus 228 --~~iE~P~~~~~~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g 301 (392)
T 2poz_A 228 --CFVEEPCDPFDNGALKVISE----QIPLPIAVGERVYTRFGFRKIFELQACGIIQPDIGTAGGLMETKKICAMAEAYN 301 (392)
T ss_dssp --EEEECCSCTTCHHHHHHHHH----HCSSCEEECTTCCHHHHHHHHHTTTCCSEECCCTTTSSCHHHHHHHHHHHHTTT
T ss_pred --CEEECCCCcccHHHHHHHHh----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcC
Confidence 59999999999999999986 58999999999999999999999999999999999998 999999999999999
Q ss_pred CeEEEccCCchhHHHHHHHHHHhhcCCcceeecCC--Cc-ccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccc
Q 013681 355 LHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT--PF-LLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 355 i~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~--pl-~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
+++++|++. |+|+++|++|++++++|..+.|++. .+ ...++++.+++.++||++.+|++||||+++|++++++|++
T Consensus 302 ~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~ 380 (392)
T 2poz_A 302 MRVAPHVCG-SSLIETATLQLEANITNFMIHEHYPAFKADDGYVEVLENPPSISSGYFEMPNGPGLGAVLIKRNIEPYLW 380 (392)
T ss_dssp CEECCCCCS-SHHHHHHHHHHHHHCTTBCCEEECGGGGGSTTCCCCBSSCCCEETTEEECCCSSBTSCCBCHHHHGGGEE
T ss_pred CeEecCCCC-CHHHHHHHHHHHHhCCCceEEeeccccccCchHHHhccCCCeecCCEEECCCCCCCCceeCHHHHHhccC
Confidence 999999987 9999999999999999988887652 11 2346777788899999999999999999999999999986
Q ss_pred ccc
Q 013681 432 DCC 434 (438)
Q Consensus 432 ~~~ 434 (438)
...
T Consensus 381 ~~~ 383 (392)
T 2poz_A 381 ASC 383 (392)
T ss_dssp EEE
T ss_pred Ccc
Confidence 554
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-63 Score=507.88 Aligned_cols=342 Identities=17% Similarity=0.159 Sum_probs=303.8
Q ss_pred eeeEEEEEEEEEEeeccCCcccCC-eeEee--eeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGL-SSVEN--VENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSP 140 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~-~~~~~--~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~ 140 (438)
.|||++++++.+++|++.||.++. +.++. ++.++|+|+|+ |.+|||||.. .++.++|.|.|++
T Consensus 11 ~mkI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~~~~V~v~td-G~~G~GE~~g-------------~i~~l~p~l~G~d 76 (392)
T 3p3b_A 11 DWKVEKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITID-GQTGYGSSIH-------------MTPEWAEDVIGRR 76 (392)
T ss_dssp TCBEEEEEEEEEEEEEEEEECBCSSSCCCEEEEEEEEEEEEET-TEEEEEECCS-------------CCHHHHHTTTTCB
T ss_pred CCeEEEEEEEEEeccCCCcccccccccccCCCCcEEEEEEEEC-CCEEEEeccc-------------HHHHHHHHhcCCC
Confidence 599999999999999999999985 55666 88999999999 9999999961 1235789999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC----C--CCceeeeee---eCCCCH------
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG----A--SNSLSTAIT---IPAVSP------ 205 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg----~--~~~ip~~~~---i~~~~~------ 205 (438)
+.+++.+| . ...+++++|||+||||++||..|+|||+|||| . ++++|+|.+ ++..++
T Consensus 77 ~~~~~~~~-------~-~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~~~~~~vp~~~s~~~~~~~~~~~~~~~ 148 (392)
T 3p3b_A 77 LLDLFDDR-------G-RLREAYRLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAA 148 (392)
T ss_dssp GGGGBCTT-------S-CBCGGGHHHHHHHHHHHHHHHHTCBHHHHHC--------CEEEEEEEEEECBTTTTCCSHHHH
T ss_pred HHHHHHHH-------h-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCccccccccCCcceeEeecccCCCCcccccch
Confidence 88877665 1 22467899999999999999999999999999 5 578999954 455688
Q ss_pred -HHHHHHHHHHhhcCCcEEEEecCC---------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCC
Q 013681 206 -AEASELASKYCKLGFSTLKLNVGR---------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMG 274 (438)
Q Consensus 206 -~~~~~~~~~~~~~Gf~~iKlKvG~---------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~ 274 (438)
+++.+.+++++++||+++|+|+|. +++.|++++++||+ .++++.|+||+|++|++++|++++++|++++
T Consensus 149 ~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~ 228 (392)
T 3p3b_A 149 VALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVN 228 (392)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 899999999999999999999996 67899999999999 6899999999999999999999999999998
Q ss_pred CCCceEecCCCCCChhhHHHHHHhhcc-ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHc
Q 013681 275 VIPVLFEQPVHRDDWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKS 353 (438)
Q Consensus 275 l~~~~iEqPl~~~d~~~~a~L~~~~r~-~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~ 353 (438)
+ .|||||++ +|++++++|++.+++ .+++||++|| +.++.+++++++.+++|++++|++++|++++++++++|+++
T Consensus 229 i--~~iE~P~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~~Git~~~~i~~~A~~~ 304 (392)
T 3p3b_A 229 L--YWLEEAFH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIWPGFTHWMELGEKLDAH 304 (392)
T ss_dssp E--EEEECSSS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTTBCHHHHHHHHHHHHHT
T ss_pred C--CEEecCCc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccccCHHHHHHHHHHHHHc
Confidence 7 59999999 999999999862100 0789999999 99999999999999999999999999999999999999999
Q ss_pred CCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 354 GLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 354 gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
|+++++| +.||+++++|++|+++++++..++|++.+ +..+++.+++.++||++.+|++||||+++|++++++|+++.
T Consensus 305 gi~~~~h-~~es~i~~~a~l~laa~~~~~~~~e~~~~--~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 381 (392)
T 3p3b_A 305 GLRSAPH-CYGNAYGIYASGHLSAAVRNFEFVEYDDI--TIEGMDVSGYRIENGEIHVPATPGFGIVFDDELVTYLINRS 381 (392)
T ss_dssp TCEECCB-CCSCTHHHHHHHHHGGGCTTBCCEEECCE--EETTEECTTCEEETTEEEECCSSBTSCEECHHHHHHHHHHT
T ss_pred CCEEEec-CCCCHHHHHHHHHHHHhCCCCceeeccch--hhHhhccCCCcccCCEEECCCCCccceeECHHHHHhhhccc
Confidence 9999999 88999999999999999999888898877 46677778889999999999999999999999999998654
Q ss_pred c
Q 013681 434 C 434 (438)
Q Consensus 434 ~ 434 (438)
-
T Consensus 382 ~ 382 (392)
T 3p3b_A 382 G 382 (392)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-63 Score=501.13 Aligned_cols=340 Identities=18% Similarity=0.232 Sum_probs=292.7
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHH-HHHHHHHHHhhHhcCCCC---
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT-KALVKVREACQFLRQSPP--- 141 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~-~~~~~~~~i~~~l~g~~~--- 141 (438)
+| +++++.+++|++.||.++.++++.++.++|+| |++|++|||||.+.++++++.. .....++.+++.|.|+++
T Consensus 4 ~m-~i~~~~~~~pl~~p~~~s~~~~~~~~~v~V~v-td~G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~l~g~d~~~~ 81 (377)
T 2pge_A 4 GM-ELSYRRSDLIFKRPAGTSRGVLTSKPTWFVRL-DIDGHGGQGEVSLIPGLSLDPEEQIGRELDLLARRLRAEEPIRL 81 (377)
T ss_dssp CC-EEEEEECCEEBCC-------CCCEECEEEEEE-EETTEEEEEEEECCTTTCSSCHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred ce-EEEEEEEeecccCcceeccEEEeecceEEEEE-EcCCCEEEEEeccCCCCCcCCHHHHHHHHHHHHHHHhCCCccch
Confidence 55 78999999999999999999999999999999 8999999999999887765433 344456678899999976
Q ss_pred ---------CCHHHHHHHHHHH------C---CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCC
Q 013681 142 ---------TTLNFALDEIARI------L---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV 203 (438)
Q Consensus 142 ---------~~~~~~~~~l~~~------~---~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~ 203 (438)
.+.+.+|+.|... . .....+++++|||+||||++||..|+|||+||||.++++|+|.+++.+
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~aid~Al~Dl~ak~~g~Pl~~llGg~~~~vp~~~~i~~~ 161 (377)
T 2pge_A 82 RQFLAERGGADFSDYRSVLTDIAGILDSWQVSTDGRFPALRFALEMALLDLLSGGRQEWFASDFTRGEKRIPVNGLIWMG 161 (377)
T ss_dssp HHHHHHTSSCTTSCHHHHHHHHHHHHHHTTSSTTSSCHHHHHHHHHHHHHHHHTSSSCSSCSTTTTTSCCEEBCEEECCC
T ss_pred hhhhhccccccHHHHHHhhhhhhhhhhhcccccccccHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEEeEEecCC
Confidence 3445666555431 1 112347899999999999999999999999999988899999999888
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hC-CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VH-PHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF 280 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~-~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i 280 (438)
++++|.+++++++++||+++|+|+|. ++++|+++|+++|+ .+ +++.|+||||++|++++|+++++.|+++++ .||
T Consensus 162 ~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avr~~~g~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~i 239 (377)
T 2pge_A 162 EAAFMQEQIEAKLAEGYGCLKLKIGAIDFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHL--HSI 239 (377)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEC---CHHHHHHHHHHHHHHSCTTTCEEEEECTTBBCTTTHHHHHHHHHTTCC--SEE
T ss_pred CHHHHHHHHHHHHHHhhhhheeecCCCChHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC--cEE
Confidence 99999999999999999999999995 88999999999999 47 899999999999999999999999999987 599
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHH--HHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeE
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLND--VQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d--~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~ 357 (438)
|||++++|++++++|++ ++++||++||++.+..+ ++++++.+++|++|+|++++| ++++++++++|+++|+++
T Consensus 240 EqP~~~~d~~~~~~l~~----~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~i~~~A~~~g~~~ 315 (377)
T 2pge_A 240 EQPIRQHQWSEMAALCA----NSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGFHYAGQWIELARERGIGF 315 (377)
T ss_dssp ECCBCSSCHHHHHHHHH----HCSSCEEESGGGTTCCTHHHHHHHHHHCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEE
T ss_pred EccCCcccHHHHHHHHh----hCCCcEEECCccCCcchHHHHHHHHhCCCCEEEECchhcCCHHHHHHHHHHHHHCCCeE
Confidence 99999999999999986 58999999999999998 789999999999999999998 999999999999999999
Q ss_pred EEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCC
Q 013681 358 MIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNA 414 (438)
Q Consensus 358 ~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~ 414 (438)
++|+++||++|++|++|+++++++..+.|++++.++.+|+. .++.++||++.+|++
T Consensus 316 ~~~~~~es~i~~~a~~hlaa~~~~~~~~~l~~~~~~~~d~~-~~~~~~~G~~~~~~~ 371 (377)
T 2pge_A 316 WITSALESNLGLAAIAQWTALYQPTMPQGLGTGQLYTNNLP-SNLAVDGGLLGVSEG 371 (377)
T ss_dssp EEBCCSCCHHHHHHHHHHHHTTCCSSCBBCSCCCCBSSCCC-CCCEECSSEEEC---
T ss_pred EecCCcccHHHHHHHHHHHHCCCCCccccCCchhhhHhhcc-CCceeeCCEEecCCc
Confidence 99999999999999999999999987788888776777776 578899999999985
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-62 Score=507.80 Aligned_cols=353 Identities=14% Similarity=0.168 Sum_probs=290.0
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEe-eeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVE-NVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~-~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
+|++++++++... ..|+.+..|... .....||+|+||+|++|||||.. ++. ....++.+.|.|+|+++.++
T Consensus 27 ~i~~~~v~pva~~-d~~l~~~~g~h~p~f~RtiV~v~Td~Gi~G~GE~~g-----~~~--~~~~le~~~p~liG~dp~~i 98 (464)
T 4g8t_A 27 IITEMQVIPVAGH-DSMLLNLSGAHSPYFTRNIVILKDNSGNTGVGEVPG-----GEK--IRQTLEDAKPLVIGKTLGEY 98 (464)
T ss_dssp BEEEEEEEEEEEE-CCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEEC-----CHH--HHHHHHHHGGGTTTCBGGGH
T ss_pred EEeEEEEEEecCC-CcccccCCcccCCccceEEEEEEECCCCEEEEeCCC-----cHH--HHHHHHHHHHHHcCCCHHHH
Confidence 7999999887743 445555444221 12234899999999999999853 121 22335678999999999999
Q ss_pred HHHHHHHHHHCCC-------------ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC-CC-CCceeeeeeeCC-------
Q 013681 145 NFALDEIARILPG-------------SEFASVRAGVEMALIDAVANSIDIPLWRLFG-GA-SNSLSTAITIPA------- 202 (438)
Q Consensus 145 ~~~~~~l~~~~~g-------------~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg-g~-~~~ip~~~~i~~------- 202 (438)
+.+|+.|++.+.+ ....+|++|||+|||||+||..|+|||+||| |. +++||+|.+...
T Consensus 99 e~i~~~l~~~~~~~~~~g~g~~~~~~~~~~~A~sAID~ALWDl~gK~~g~Pv~~LLGgG~~Rd~V~~y~~~~~~~d~~~~ 178 (464)
T 4g8t_A 99 KNVMNTVRQTFNDHDAGGRGLQTFDLRTTIHVVTAIEAAMLDLLGQFLGVTVASLLGDGQQRDAVEMLGYLFFIGDRKKT 178 (464)
T ss_dssp HHHHHHHHHHTTTSCTTTTCSSSSCCCSHHHHHHHHHHHHHHHHHHHHTSBTGGGSTTSCCCSEEEBCEEECCBCCGGGS
T ss_pred HHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeeccCccccc
Confidence 9999999875421 1245789999999999999999999999999 55 789999877532
Q ss_pred ----------------------CCHHHHHHHHHH-HhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCC
Q 013681 203 ----------------------VSPAEASELASK-YCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGY 258 (438)
Q Consensus 203 ----------------------~~~~~~~~~~~~-~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~ 258 (438)
.+++++.+++++ +.+.||++||+|+|. +.++|+++++++|+.+||++|+||+|++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KlKvG~~~~~~di~~v~avrea~pd~~L~vDaN~~w 258 (464)
T 4g8t_A 179 TLAYQNQENDPCDWYRVRHEEAMTPESVVRLAEAAYEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPNGAW 258 (464)
T ss_dssp CSCCCCCTTCSSHHHHHTTSCBCSHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHSTTCCEEEECTTCB
T ss_pred chhhhcccccccchhhhcccccCCHHHHHHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHhhCCCceEEEECCCcc
Confidence 246666555544 445699999999995 88999999999999889999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
++++|+++++.|+++ + .|||||++++|+.++.++.+.+|+++++|||+||++.+..+++++++.+++|++|+| +++
T Consensus 259 t~~~Ai~~~~~le~~-l--~wiEeP~~~~d~~~~~e~~a~lr~~~~iPIa~gE~~~~~~~~~~~i~~~avdi~~~d-~~~ 334 (464)
T 4g8t_A 259 SLDEAVKIGKQLKGV-L--AYAEDPCGAEQGYSGREIMAEFRRATGLPTATNMIATDWRQMGHTISLQSVDIPLAD-PHF 334 (464)
T ss_dssp CHHHHHHHHHHTTTT-C--SCEESCBCCBTTBCHHHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHHTCCSEEBCC-HHH
T ss_pred CHHHHHHHHHHhhhc-c--ceeecCcCcccccchHHHHHhhhccCCCCccccccccchhhHHHHHHhhCCCEEecc-ccc
Confidence 999999999999987 6 499999999887544333333334799999999999999999999999999999999 477
Q ss_pred h-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee-ecCCC-cccccCCCCCceeeeCcEEecCCCC
Q 013681 339 G-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTP-FLLSEDPFVGGCEVSGAIYNFTNAR 415 (438)
Q Consensus 339 G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~-e~~~p-l~~~~~~~~~~~~~~~G~~~~p~~p 415 (438)
| ++++++++++|+++|+++++|++.+++|+++|++|++++++|..+. +...+ ....++++.+++.++||++.+|++|
T Consensus 335 GGit~~~kia~lA~~~gi~v~~h~~~~~~I~laA~~hlaaa~pn~~~~~~~~~~~~~~~~~l~~~p~~i~dG~i~vP~~P 414 (464)
T 4g8t_A 335 WTMQGSIRVAQMCHEWGLTWGSHSNNHFDISLAMFTHVAAAAPGDITAIDTHWIWQEGNQRLTKEPFQIKGGLVEVPKKP 414 (464)
T ss_dssp HCHHHHHHHHHHHHHHTCCCBCCCCSCCHHHHHHHHHHHTTCCSCCCCBCCCHHHHTTSCCSBSSCCCEETTEEECCSSS
T ss_pred cchHHHHHHHHHHHHcCCEEEEcCCcccHHHHHHHHHHHHhCCCCCccccccccccchhHhhcCCCCeeECCEEECCCCC
Confidence 6 9999999999999999999999999999999999999999986442 33222 2244667788899999999999999
Q ss_pred CccceeChhhhhhcc
Q 013681 416 GQGGFLKWTIVSCTQ 430 (438)
Q Consensus 416 GlGv~ld~~~l~~~~ 430 (438)
|||||+|+|+|++|.
T Consensus 415 GLGvelD~d~l~kyh 429 (464)
T 4g8t_A 415 GLGVELDMDQVMKAN 429 (464)
T ss_dssp BTCCCBCHHHHHHHH
T ss_pred CCceEECHHHHHHHh
Confidence 999999999999985
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-62 Score=498.29 Aligned_cols=350 Identities=15% Similarity=0.187 Sum_probs=303.1
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++|+++.+.+|..+|+ ..++|+|+|++|++||||+++..+.+.+ .....++++.|.|+|+++.++
T Consensus 3 MkI~~i~~~~~~~~~~~~~----------~~v~V~v~td~G~~G~Ge~~~~~g~~~~--~~~~~i~~l~p~l~G~d~~~~ 70 (403)
T 2ox4_A 3 LKITKIEIFHVHTRPQSGQ----------RPILVKVSTDEGIYGLGEAGIAYGVGGS--AAAGILKDYAALLIGEDPFNT 70 (403)
T ss_dssp CCEEEEEEEEECCCTTTCC----------CCEEEEEEETTSCEEEEEESCSSSSCHH--HHHHHHHHHHHHHTTCCTTCH
T ss_pred CeEEEEEEEEecCCCCCCc----------cceEEEEEeCCCCEEEEeecCCCCCchH--HHHHHHHHHHHHcCCCCHHHH
Confidence 8999999999977532232 2589999999999999999433222222 223345568999999999999
Q ss_pred HHHHHHHHHHCCC-----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeee-eC--CC-------CHHHH
Q 013681 145 NFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT-IP--AV-------SPAEA 208 (438)
Q Consensus 145 ~~~~~~l~~~~~g-----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~-i~--~~-------~~~~~ 208 (438)
+.+|+.|.+...+ ...+++++|||+||||++||..|+|||+||||. ++++|+|.+ ++ .. +++++
T Consensus 71 ~~i~~~l~~~~~~~~~~~~~~~~a~~aid~AlwDl~gk~~g~Pl~~llGg~~~~~vp~y~~~i~~g~~~~~~~~~~~e~~ 150 (403)
T 2ox4_A 71 EAIWEKLFKKTFWGQGGGTVIFSGISAFDIAFWDIKGKALNLPVYKLLGGKNREDLRVYASQLQFGWGKERKSKGRKEEY 150 (403)
T ss_dssp HHHHHHHHHSSSGGGTCBHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSSEEEEEECGGGCSSSSCCCCCSHHHH
T ss_pred HHHHHHHHHhcccccCCcHHHHhHHHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeeeEeeccCCccccccccCCHHHH
Confidence 9999999874321 124689999999999999999999999999996 678999987 64 34 89999
Q ss_pred HHHHHHHhhcCCcEEEEec------CC-------------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHH
Q 013681 209 SELASKYCKLGFSTLKLNV------GR-------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLG 268 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKv------G~-------------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (438)
.+.+++++++||+++|+|+ |. +++.|++++++||+ +++++.|++|+|++|++++|+++++
T Consensus 151 ~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~ 230 (403)
T 2ox4_A 151 AEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAK 230 (403)
T ss_dssp HHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999997 53 45789999999999 6899999999999999999999999
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHH
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~ 347 (438)
+|+++++ .|||||++++|++++++|++ ++++||++||++.++.+++++++.+++|++++|++++| ++++++++
T Consensus 231 ~l~~~~i--~~iE~P~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~ 304 (403)
T 2ox4_A 231 AIEEFNI--FFYEEINTPLNPRLLKEAKK----KIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFTEFKKIA 304 (403)
T ss_dssp HHGGGCE--EEEECCSCTTSTHHHHHHHH----TCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHH
T ss_pred HHHhhCC--CEEeCCCChhhHHHHHHHHH----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHH
Confidence 9999987 59999999999999999986 68999999999999999999999999999999999997 99999999
Q ss_pred HHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCC--cccccCCCCCceeeeCcEEecCCCCCccceeChhh
Q 013681 348 KATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP--FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (438)
Q Consensus 348 ~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~p--l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~ 425 (438)
++|+++|+++++|++. |+|+++|++|++++++|..++|+... ..+..+++.+++.++||++.+|++||||+++|+++
T Consensus 305 ~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~d~~~~~~~~~~G~~~~p~~PGlGv~~d~~~ 383 (403)
T 2ox4_A 305 DMAHIFEVTVQAHVAG-TGVAEAASLHAEIAIPNFCIHEHHQKTLLPEYEELCVHNYQPVKGRYKVPELPGIGQDITEKL 383 (403)
T ss_dssp HHHHHTTCEECCCCCS-CHHHHHHHHHHHHTCSSBCCEEEEGGGGSHHHHTTBSCCCCCBTTEECCCCSSBTSCCBCGGG
T ss_pred HHHHHcCCEEeecCCC-CHHHHHHHHHHHHhCCCcceeeeccccccchHHHhccCCceecCCEEECCCCCCCCcccCHHH
Confidence 9999999999999984 99999999999999999888876321 11246677778889999999999999999999999
Q ss_pred hhhccccc
Q 013681 426 VSCTQVDC 433 (438)
Q Consensus 426 l~~~~~~~ 433 (438)
+++|+++.
T Consensus 384 l~~~~~~~ 391 (403)
T 2ox4_A 384 YQISDYVS 391 (403)
T ss_dssp GTSEEEEE
T ss_pred HHhccccc
Confidence 99998654
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-61 Score=493.51 Aligned_cols=345 Identities=18% Similarity=0.246 Sum_probs=298.5
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCC--CCchHHHHHHHHHH-HhhHhcCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL--VTGDQTKALVKVRE-ACQFLRQSPP 141 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~--~s~~~~~~~~~~~~-i~~~l~g~~~ 141 (438)
|||++++++.+++|++.||+++.++++.++.++|+|+|++|++||||+.+... ++.+ .....+++ +.|.|.|+++
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~g~~~~~~~--~~~~~i~~~l~p~l~G~d~ 80 (389)
T 2oz8_A 3 LSLSHFRITRFQFARDRVIGDSQVRADDVNVAALELVSESGEVGLGFIQTLFNPLPDQQ--EIESVFEHEVWPSLKGNRA 80 (389)
T ss_dssp CCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEEEESSSCCCCHH--HHHHHHHHHTHHHHTTSCH
T ss_pred CEEEEEEEEEEEeccCCceecccceecccceEEEEEEECCCCEEEEEeccCCCccccHH--HHHHHHHHHHHHHHcCCCH
Confidence 89999999999999999999999999999999999999999999999987321 1121 23334554 7899999987
Q ss_pred CCHHHHHHHHHHHCCCC---hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCC--CHHHHHHHHHHHh
Q 013681 142 TTLNFALDEIARILPGS---EFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAV--SPAEASELASKYC 216 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g~---~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~--~~~~~~~~~~~~~ 216 (438)
.++ |..+.....+. ..+++++|||+||||++||..|+|||+||||.++++|+|.+++.. +++++.+.+++++
T Consensus 81 ~~~---~~~~~~~~~~~~~~l~~~a~~aid~AlwDl~~k~~g~Pl~~lLGg~~~~vp~y~~~~~~~~~~~~~~~~a~~~~ 157 (389)
T 2oz8_A 81 IAL---VHRVNRPRGGNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRRNRVKAYASGLDFHLDDDAFVSLFSHAA 157 (389)
T ss_dssp HHH---TTCCCCCC------CCSCCHHHHHHHHHHHHHHHHTSBHHHHTTCSCSEEEEEEECCBTTCCHHHHHHHHHHHH
T ss_pred HHH---HHHHhccCCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCceEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 544 21110000111 035789999999999999999999999999998999999887653 8999999999999
Q ss_pred hcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhh--CCCCCceEecCCCCCChhhH
Q 013681 217 KLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLND--MGVIPVLFEQPVHRDDWSGL 292 (438)
Q Consensus 217 ~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~--~~l~~~~iEqPl~~~d~~~~ 292 (438)
++||+++|+|+|. +++.|++++++||+ .++++.|+||+|++|++++|+++++.|++ +++ .|||||++++|++++
T Consensus 158 ~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i--~~iEqP~~~~~~~~~ 235 (389)
T 2oz8_A 158 SIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDL--LWVEDPILRHDHDGL 235 (389)
T ss_dssp HTTCCEEEEECCCSSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCC--SEEESCBCTTCHHHH
T ss_pred HhCCCEEEEccCCCCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCc--eEEeCCCCCcCHHHH
Confidence 9999999999997 89999999999999 47899999999999999999999999999 886 599999999999999
Q ss_pred HHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEc-cCCchhHHH
Q 013681 293 HDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMID-GMIETRLAT 369 (438)
Q Consensus 293 a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~-s~~es~ig~ 369 (438)
++|++ ++ ++||++||++ +..+++++++.+++|++++| | ++++++++++|+++|+++++| ++.|
T Consensus 236 ~~l~~----~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik----GGit~a~~i~~~A~~~gi~~~~~~~~~e----- 301 (389)
T 2oz8_A 236 RTLRH----AVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH----GQVTDVMRIGWLAAELGIPISIGNTFLE----- 301 (389)
T ss_dssp HHHHH----HCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC----SCHHHHHHHHHHHHHHTCCEEECCCGGG-----
T ss_pred HHHHh----hCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC----cCHHHHHHHHHHHHHcCCeEeecccHHH-----
Confidence 99986 57 8999999999 99999999999999999999 7 999999999999999999999 7655
Q ss_pred HHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhccccc
Q 013681 370 GFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDC 433 (438)
Q Consensus 370 ~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~ 433 (438)
+++|+++++++..+.|+. ++ +..+++.+++.++||++.+|++||||+++|++++++|+++.
T Consensus 302 -a~lhlaaa~~~~~~~e~~-~~-~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~ 362 (389)
T 2oz8_A 302 -AGVHMAVALPEVEWLEYS-FQ-NFDHLVEQPIEIRDGYAYAPDRPGHGLVLSEKARGEWSRPR 362 (389)
T ss_dssp -TTHHHHHHSTTEEEEEEC-CC-SCGGGBSSCCCEETTEEECCSSSBTSCCBCHHHHHHSBCCS
T ss_pred -HHHHHHhcCCCCceeecc-hH-HHhhhccCCceEECCEEECCCCCcCCCccCHHHHHhhcccc
Confidence 788999999998888875 32 34566777888999999999999999999999999998653
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-62 Score=500.96 Aligned_cols=356 Identities=19% Similarity=0.249 Sum_probs=304.9
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHH---HHHHHHH-HHhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT---KALVKVR-EACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~---~~~~~~~-~i~~~l~g~~ 140 (438)
|||++++++.+++|++.||.++. ++.++|+|+|+ |++||||+.+.+.+ .+.. .....++ .++|.|+|+
T Consensus 3 mkI~~i~~~~~~~pl~~p~~~s~-----~~~~~V~v~td-G~~G~GE~~~~~~~-~~~~~~~~~~~~i~~~l~~~l~G~- 74 (401)
T 2hzg_A 3 LKIDAVDLFYLSMPEVTDAADGS-----QDALLVRVAAG-GHIGWGECEAAPLP-SIAAFVCPKSHGVCRPVSDSVLGQ- 74 (401)
T ss_dssp CBEEEEEEEEEECSSCCSSSCGG-----GEEEEEEEEET-TEEEEEEECSCHHH-HHHHHHCCCSBTTBCCGGGGTTTC-
T ss_pred CEEEEEEEEEEeccCCCcccccc-----ceEEEEEEEeC-CcEEEEeeecccCC-cccchhHHHHHHHHHHHHHHhCCC-
Confidence 89999999999999999999986 77899999999 99999999876421 1111 1112234 378999999
Q ss_pred CCCHHH-HHHHHHHH-CCC-ChhhH--HHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeee-CCCCHHHHHHHHH
Q 013681 141 PTTLNF-ALDEIARI-LPG-SEFAS--VRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITI-PAVSPAEASELAS 213 (438)
Q Consensus 141 ~~~~~~-~~~~l~~~-~~g-~~~~s--a~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i-~~~~~~~~~~~~~ 213 (438)
+.++++ +++.+... ..| ...++ +++||||||||++||..|+|||+||||. ++++|+|.++ +..+++++.+.++
T Consensus 75 ~~~~~~~l~~~~~~~~~~g~~~~~~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~vp~~~~~~~~~~~~~~~~~a~ 154 (401)
T 2hzg_A 75 RLDGPDDIARIAALVGYNSMDLLQAPHMLSGIEMALWDLLGRRLSAPAWALLGYSASHGKRPYASLLFGDTPQETLERAR 154 (401)
T ss_dssp BCSSHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHTCBHHHHTTCSCCCCBEEEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCceEeeEEcCCCCCHHHHHHHHH
Confidence 888752 22222111 012 12367 8999999999999999999999999997 4899999654 4679999999999
Q ss_pred HHhhcCCcEEEEe---cCCCc-hHHHHHHHHHHh-hCCCcEEEEeCCCCC--CHHHHHHHHHHhhhCCCCCceEecCCCC
Q 013681 214 KYCKLGFSTLKLN---VGRNI-TADFDVLQAIHA-VHPHCSFILDANEGY--TSEEAVEVLGKLNDMGVIPVLFEQPVHR 286 (438)
Q Consensus 214 ~~~~~Gf~~iKlK---vG~d~-~~di~~l~aiR~-~~~~~~L~vDAN~~~--s~~~A~~~l~~L~~~~l~~~~iEqPl~~ 286 (438)
+++++||+++|+| +|.++ +.|++++++||+ .++++.|+||+|++| ++++|++++++|+++++ .|||||+++
T Consensus 155 ~~~~~Gf~~iKik~spvG~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~ 232 (401)
T 2hzg_A 155 AARRDGFAAVKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGV--LWLEEPFDA 232 (401)
T ss_dssp HHHHTTCSEEEEESTTTTSSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTC--SEEECCSCT
T ss_pred HHHHhCCCeEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCC--CEEECCCCc
Confidence 9999999999999 99889 999999999999 579999999999999 99999999999999997 499999999
Q ss_pred CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 287 DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 287 ~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
+|++++++|++. ++++||++||++.+..+++++++.+++|++++|++++| ++++++++++|+++|+++++| ++||
T Consensus 233 ~d~~~~~~l~~~---~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~h-~~es 308 (401)
T 2hzg_A 233 GALAAHAALAGR---GARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVADAAQARGITYVNH-TFTS 308 (401)
T ss_dssp TCHHHHHHHHTT---CCSSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEEC-CCSC
T ss_pred cCHHHHHHHHhh---CCCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHHHHHHHHHcCCEEecC-CCCc
Confidence 999999999730 57999999999999999999999999999999999998 999999999999999999999 7899
Q ss_pred hHHHHHHHHHHhhcCCcceeecCCCc-ccccCCCCCceeee-CcEEecCCCCCccceeChhhhhhcccccc
Q 013681 366 RLATGFALHLAAGLGCIKYVNLNTPF-LLSEDPFVGGCEVS-GAIYNFTNARGQGGFLKWTIVSCTQVDCC 434 (438)
Q Consensus 366 ~ig~~a~~hla~al~~~~~~e~~~pl-~~~~~~~~~~~~~~-~G~~~~p~~pGlGv~ld~~~l~~~~~~~~ 434 (438)
+++++|++|+++++++..++|++..+ .+.+|++.+++.++ ||++.+|++||||+++|++++++|++...
T Consensus 309 ~i~~~a~~hlaaa~~~~~~~e~~~~~~~~~~d~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~~~~~ 379 (401)
T 2hzg_A 309 HLALSASLQPFAGLEADRICEYPAAPQQLALDITGDHIRPDAEGLIRAPEAPGLGLQVAASALRRYLVETE 379 (401)
T ss_dssp HHHHHHHHGGGTTCTTCCEEEEESSCCHHHHHTBSSCCCCCTTSCBCSCSSSBTSCCBCHHHHHHHBCCEE
T ss_pred HHHHHHHHHHHHhCCCceeeeccCCcchHHHHhccCCceeccCCeEECCCCCcCCceECHHHHHhhhccce
Confidence 99999999999999998888764211 13566777788889 99999999999999999999999987643
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-61 Score=486.04 Aligned_cols=324 Identities=15% Similarity=0.121 Sum_probs=286.2
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCC--CCchHHH-HHHHHHHHhhHhcCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL--VTGDQTK-ALVKVREACQFLRQSPP 141 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~--~s~~~~~-~~~~~~~i~~~l~g~~~ 141 (438)
|||++++++.+++|++.||+++.++++.++.++|+|+|++|++||||+.+.+. |+++..+ ....++++.|.|.|+++
T Consensus 2 MkI~~i~~~~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~~~~l~G~d~ 81 (342)
T 2okt_A 2 LKLTALHFYKYSEPFKSQIVTPKVTLTHRDCLFIELIDDKGNAYFGECNAFQTDWYDHETIASVKHVIEQWFEDNRNKSF 81 (342)
T ss_dssp BCEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTCCEEEEECCCBSSTTSCSCBHHHHHHHHHHHHHHHTTCCB
T ss_pred cEEEEEEEEEEeecccCCeecccEEEEeeeEEEEEEEECCCCEEEEEecCCCCCcCCCCCHHHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999999999999999999999999999999999998753 5554332 33445555699999999
Q ss_pred CCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeee-CCCCHHHHHHHHHHHhhcCC
Q 013681 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITI-PAVSPAEASELASKYCKLGF 220 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i-~~~~~~~~~~~~~~~~~~Gf 220 (438)
.+++.+|+.|... .+ .+++++|||+||||++||..|+ ++|+|.++ ++.+ +++ ++++++||
T Consensus 82 ~~~~~l~~~l~~~-~g--~~~a~said~ALwDl~gk~~g~-----------~v~~~~~~~g~~~-e~~----~~~~~~G~ 142 (342)
T 2okt_A 82 ETYEAALKLVDSL-EN--TPAARATIVMALYQMFHVLPSF-----------SVAYGATASGLSN-KQL----ESLKATKP 142 (342)
T ss_dssp CSHHHHHHTTGGG-TT--CHHHHHHHHHHHHHTTCCCCCE-----------EEECEEEESSCCH-HHH----HHHHHHCC
T ss_pred CCHHHHHHHHHHh-hc--ChHHHHHHHHHHHHHhhhhhCc-----------eEeeeEEEecCCH-HHH----HHHHHcCC
Confidence 9999999988643 33 4789999999999999999987 79999988 7655 555 56678999
Q ss_pred cEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhc
Q 013681 221 STLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300 (438)
Q Consensus 221 ~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r 300 (438)
++||+|+| ++ |++++++||+..|+++||||||++|++++| +++++|+++++ .|||||++++|++++++ .
T Consensus 143 ~~~KiKvg--~~-d~~~v~avr~~~~~~~l~vDaN~~~~~~~A-~~~~~l~~~~i--~~iEqP~~~~d~~~~~~-~---- 211 (342)
T 2okt_A 143 TRIKLKWT--PQ-IMHQIRVLRELDFHFQLVIDANESLDRQDF-TQLQLLAREQV--LYIEEPFKDISMLDEVA-D---- 211 (342)
T ss_dssp SEEEEECC--TT-HHHHHHHHTTSSSCCEEEEECTTCCCGGGH-HHHHHHGGGCE--EEEECCCSSGGGGGGSC-T----
T ss_pred cEEEEEeC--HH-HHHHHHHHHHhCCCCeEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCCCccHHHHHH-h----
Confidence 99999999 68 999999999966999999999999999999 99999999987 59999999999999987 3
Q ss_pred cccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhc
Q 013681 301 DTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGL 379 (438)
Q Consensus 301 ~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al 379 (438)
++++|||+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|+++++
T Consensus 212 -~~~ipIa~dEs~~~~~~~~~~i~~~a~d~i~~k~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~i~~aa~~hlaa~~ 290 (342)
T 2okt_A 212 -GTIPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGIDKVQTAIDTLKSHGAKVVIGGMYEYGLSRYFTAMLARKG 290 (342)
T ss_dssp -TSSCCEEESTTCCCHHHHHHHHHHSCCCEEEECHHHHTSGGGHHHHHHHHHHTTCEEEEBCSSCCHHHHHHHHHHHTTS
T ss_pred -cCCCCEEecCCCCCHHHHHHHHHhCCCCEEEEChhhcCCHHHHHHHHHHHHHCCCEEEEcCCcccHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999997 9999999999999999999999999999999999999987
Q ss_pred --CCcceeec-CCCcccccCCCCCceeeeCcEEecCCCCCccceeChh
Q 013681 380 --GCIKYVNL-NTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWT 424 (438)
Q Consensus 380 --~~~~~~e~-~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~ 424 (438)
++ ++ +++.++.+|++.+++.++||++.+ +.||+|+++...
T Consensus 291 ~~~~----~l~~~~~~~~~d~~~~~~~~~~G~~~~-~~PGlg~~~~~~ 333 (342)
T 2okt_A 291 DYPG----DVTPAGYYFEQDVVAHSGILKEGRLEF-RPPLVDITQLQP 333 (342)
T ss_dssp SSCC----BCCCTTSSCSSCSSTTTTEEETTEEEE-CCCCCCGGGCEE
T ss_pred cccc----ccCCchhhhhccccCCCceEECCEEEe-CcccCCHHHcCc
Confidence 33 23 555556778888889999999998 889999987643
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-61 Score=492.57 Aligned_cols=341 Identities=19% Similarity=0.250 Sum_probs=298.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++|+++.+. |. . +.++|+|+|++| +||||+ +. +.+. ......++++.|.|+|+++.++
T Consensus 6 MkI~~i~~~~~~-~~-~------------~~v~V~v~td~G-~G~Ge~-~~-g~~~--~~~~~~i~~l~p~liG~d~~~~ 66 (410)
T 2qq6_A 6 PRITRVETAAIR-AV-G------------PSVLVRVWAGDE-HGLGEC-YP-SAPA--AGIHHIVMNMEEQLLGEDPRDV 66 (410)
T ss_dssp CCCCEEEEEEEC-CC--------------CEEEEEEEETTE-EEEEEE-CC-CSCH--HHHHHHHHTTHHHHTTCCTTCH
T ss_pred ceEeEEEEEEEC-CC-C------------CEEEEEEEECCc-EEEEEe-cC-CCCh--HHHHHHHHHHHHHhCCCCccHH
Confidence 899999999986 43 1 148999999999 999999 52 2112 2233345568899999999999
Q ss_pred HHHHHHHHHHCCC-----ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCC--C-------------
Q 013681 145 NFALDEIARILPG-----SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPA--V------------- 203 (438)
Q Consensus 145 ~~~~~~l~~~~~g-----~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~--~------------- 203 (438)
+.+|+.|.+...+ ...+++++|||+||||++||..|+|||+||||. ++++|+|.+++. .
T Consensus 67 ~~i~~~l~~~~~~~~~~~~~~~~A~~aid~AlwDl~gk~~g~Pl~~lLGg~~~~~vp~y~~~~~g~~~h~~~~~~~~~~~ 146 (410)
T 2qq6_A 67 ERLYEKMRRWNIFTGGQAGAVITALSGIETALWDLAGKLQGVPVYRLLGGAFRRRVRLYADCNAGTVDAAAHHIEGGLFE 146 (410)
T ss_dssp HHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCSCSEEEEEEECCCSEECTTCCEEECCTTC
T ss_pred HHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHhHhHcCCcHHHHcCCCccCceeEEEeccccccccccccccccccc
Confidence 9999999875321 234789999999999999999999999999996 789999987642 3
Q ss_pred --CHHHHHHHHHHHhhcCCcEEEEec----CC-------------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHH
Q 013681 204 --SPAEASELASKYCKLGFSTLKLNV----GR-------------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (438)
Q Consensus 204 --~~~~~~~~~~~~~~~Gf~~iKlKv----G~-------------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A 263 (438)
+++++.+.+++++++||+.+|+|+ |. +++.|++++++||+ +++++.|+||+|++|++++|
T Consensus 147 ~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~~~a 226 (410)
T 2qq6_A 147 EGSNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDIPSS 226 (410)
T ss_dssp STHHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence 788899999999999999999999 64 45789999999999 68999999999999999999
Q ss_pred HHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHH
Q 013681 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLG 342 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~ 342 (438)
+++++.|+++++ .|||||++++|++++++|++ ++++||++||++.++.+++++++.+++|++++|++++| +++
T Consensus 227 ~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite 300 (410)
T 2qq6_A 227 IRFARAMEPFGL--LWLEEPTPPENLDALAEVRR----STSTPICAGENVYTRFDFRELFAKRAVDYVMPDVAKCGGLAE 300 (410)
T ss_dssp HHHHHHHGGGCC--SEEECCSCTTCHHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBHHHHTHHHH
T ss_pred HHHHHHHhhcCC--CeEECCCChhhHHHHHHHHh----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 999999999997 49999999999999999985 68999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecC---CCcccccCCCC--CceeeeCcEEecCCCCCc
Q 013681 343 TLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN---TPFLLSEDPFV--GGCEVSGAIYNFTNARGQ 417 (438)
Q Consensus 343 ~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~---~pl~~~~~~~~--~~~~~~~G~~~~p~~pGl 417 (438)
+++++++|+++|+++++|++. |+|+++|++|++++++|..++|+. .|+ ..+++. +++.++||++.+|++|||
T Consensus 301 ~~~ia~~A~~~g~~~~~h~~~-s~i~~aa~~hlaaa~~~~~~~e~~~~~~~~--~~d~~~~~~~~~~~~G~i~~p~~PGl 377 (410)
T 2qq6_A 301 AKRIANLAELDYIPFAPHNVS-SPVGTVAAAHVCAAVSNFAVLEWHAIDMPH--WEDFVRYPGGPVIREGHIELTEEPGL 377 (410)
T ss_dssp HHHHHHHHHTTTCCBCCBCCS-CHHHHHHHHHHHHSCTTBCCEEECCTTCTT--GGGGBCCSSSSSEETTEEECCSSSGG
T ss_pred HHHHHHHHHHcCCeEeecCCC-cHHHHHHHHHHHHhCCCceeeecccccchh--hhhhcccCCCceeeCCEEECCCCCCC
Confidence 999999999999999999985 999999999999999998888763 332 456776 778899999999999999
Q ss_pred cceeChhhhhhccccc
Q 013681 418 GGFLKWTIVSCTQVDC 433 (438)
Q Consensus 418 Gv~ld~~~l~~~~~~~ 433 (438)
|+++|++++++|++..
T Consensus 378 Gv~~d~~~l~~~~~~~ 393 (410)
T 2qq6_A 378 GLELDEEAAFEHRHEK 393 (410)
T ss_dssp GCCBCHHHHHTTBCC-
T ss_pred CceeCHHHHHhccccC
Confidence 9999999999998653
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-60 Score=484.44 Aligned_cols=345 Identities=17% Similarity=0.167 Sum_probs=290.1
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEc---CCcEEEEEEecCCCCCchHHHHHHHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELS---NGCVGWGEVAVVPLVTGDQTKALVKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~---~G~~G~GE~~~~~~~s~~~~~~~~~~~~-i~~~l~g~~ 140 (438)
|||++++ .+++|++.||.++.++++.++.++|+|+|+ +|++||||+.+ +++.+.. ...+++ ++|.|.|++
T Consensus 6 mkI~~i~--~~~~pl~~p~~~~~~~~~~~~~~~V~v~td~~~~G~~G~GE~~~--~~~~~~~--~~~i~~~l~~~l~G~d 79 (392)
T 1tzz_A 6 VRIVDVR--EITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFN--SNGRYGQ--GGLIRERFASRILEAD 79 (392)
T ss_dssp CCEEEEE--EEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEEC--CTTSCCC--HHHHHHTHHHHHHTSC
T ss_pred cEEeEEE--EEEecCCCcccccccccCcceEEEEEEEECCCCCCCEEEEEecC--CCchHHH--HHHHHHHHHHHHcCCC
Confidence 8999999 788999999999999999999999999999 99999999986 2222211 122343 789999999
Q ss_pred C----------CCHHHHHHHHHHHCC--C-ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC----C-CCCceeeeeeeCC
Q 013681 141 P----------TTLNFALDEIARILP--G-SEFASVRAGVEMALIDAVANSIDIPLWRLFG----G-ASNSLSTAITIPA 202 (438)
Q Consensus 141 ~----------~~~~~~~~~l~~~~~--g-~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg----g-~~~~ip~~~~i~~ 202 (438)
+ .+++.+|+.|..... + ...+++++|||+||||++||..|+|||+||| | .++++|+|.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~a~~aid~AlwDl~ak~~g~Pl~~llG~~~~g~~~~~v~~y~~~~~ 159 (392)
T 1tzz_A 80 PKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAERHGVKANPRVFVYAAGGY 159 (392)
T ss_dssp GGGSBCTTSSSBCHHHHHHHHTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHTTSCCCCEEEEEEECCC
T ss_pred chhhhcccccccCHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHcCCcHHHHcCCccCCCcCCCeeEEEeCCc
Confidence 9 999999999976432 1 1257899999999999999999999999999 8 5788999876432
Q ss_pred ----CCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 203 ----VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 203 ----~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
.+++++.+.+++++++||+++|+|+|. +++.|++++++||+ .++++.|+||+|++|++++|++++++|+++++
T Consensus 160 ~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i- 238 (392)
T 1tzz_A 160 YYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPL- 238 (392)
T ss_dssp C----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCC-
T ss_pred ccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCC-
Confidence 389999999999999999999999996 88999999999999 58999999999999999999999999999997
Q ss_pred CceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC----CccEEEecCCcch-HHHHHHHHHHHH
Q 013681 277 PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN----LASVVNIKLAKFG-VLGTLQIIKATR 351 (438)
Q Consensus 277 ~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~----a~d~i~lk~~~~G-i~~~~~~~~~A~ 351 (438)
.|||||++++|++++++|++ ++++||++||++.+..+++++++.+ ++|++++|++++| ++++++++++|+
T Consensus 239 -~~iEqP~~~~d~~~~~~l~~----~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~GGit~~~~i~~~A~ 313 (392)
T 1tzz_A 239 -FWYEEVGDPLDYALQAALAE----FYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLK 313 (392)
T ss_dssp -SEEECCSCTTCHHHHHHHTT----TCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHHHHHHHHHHH
T ss_pred -CeecCCCChhhHHHHHHHHh----hCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECccccCCHHHHHHHHHHHH
Confidence 49999999999999999985 6899999999999999999999999 9999999999998 999999999999
Q ss_pred HcCCe---EEEccCCchhHHHHHHHHHHhhcCCc---ceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhh
Q 013681 352 KSGLH---LMIDGMIETRLATGFALHLAAGLGCI---KYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (438)
Q Consensus 352 ~~gi~---~~~~s~~es~ig~~a~~hla~al~~~---~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~ 425 (438)
++|++ +++|+ . + .+.+|+++++++. .+.|+++|+ .+.+. ++.++||++.+|++||||+++|++.
T Consensus 314 ~~gi~~~~~~~~~---~--~-~~~~hl~aa~~~~~~~~~~~~~~~~---~~~~~-~~~~~~G~~~~p~~PGlGv~~d~~~ 383 (392)
T 1tzz_A 314 THGWSPSRCIPHG---G--H-QMSLNIAAGLGLGGNESYPDLFQPY---GGFPD-GVRVENGHITMPDLPGIGFEGKSDL 383 (392)
T ss_dssp HTTCCGGGBCCSC---C--B-HHHHHHHHHHTCSCEEECTTCSTTT---BSCST-TCCCBTTEEECCCCSBTSGGGCHHH
T ss_pred HCCCCCceEeecH---H--H-HHHHHHHHhCCCccccccccccchH---HhccC-CcceeCCEEECCCCCccCCccCHHH
Confidence 99999 99995 1 1 2358999988865 234555553 23444 6788999999999999999999999
Q ss_pred hhhccc
Q 013681 426 VSCTQV 431 (438)
Q Consensus 426 l~~~~~ 431 (438)
+++|++
T Consensus 384 ~~~~~~ 389 (392)
T 1tzz_A 384 YKEMKA 389 (392)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999864
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-60 Score=485.05 Aligned_cols=326 Identities=15% Similarity=0.180 Sum_probs=274.9
Q ss_pred EeeccCCcc-----cCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH-HHHhhHhcCCCCCCHHHHHH
Q 013681 76 NVALSAPLS-----LGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTTLNFALD 149 (438)
Q Consensus 76 ~~pl~~p~~-----~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~i~~~l~g~~~~~~~~~~~ 149 (438)
+.||++++. +|.+. ..++.++|+|+|++|++||||+.+. . .....+ +.+.|.|+|+++.+++.+|+
T Consensus 43 ~~p~~~~~~~~~~~ts~g~-~~~~~vlV~V~tddGi~G~Ge~~~~-----~--~~~~~i~~~lap~LiG~dp~~ie~i~~ 114 (455)
T 3fxg_A 43 STPASKWEQYKKSRTSWGI-NVLGSFLVEIEATDGTVGFATGFGG-----P--PACWLVHQHFERFLIGADPRNTNLLFE 114 (455)
T ss_dssp CCTTTTSGGGTSCTTTTTT-TSSCEEEEEEEETTSCEEEEEEECH-----H--HHHHHHHHTTHHHHTTCCTTCHHHHHH
T ss_pred cCccccccccccccccccc-ccceEEEEEEEECCCCEEEEeCcCC-----H--HHHHHHHHHHHHHHCCCCcchHHHHHH
Confidence 478877764 34333 2478899999999999999998632 1 112223 45889999999999999999
Q ss_pred HHHHHC--CC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEE
Q 013681 150 EIARIL--PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLK 224 (438)
Q Consensus 150 ~l~~~~--~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iK 224 (438)
.|++.. .+ ....++++|||||||||+||.+|+|||+||||. ++++|+|.+. .+++ ..+++||+++|
T Consensus 115 ~m~~~~~~~g~~G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~rd~vp~y~~g--~~~~-------~~~~~Gf~~~K 185 (455)
T 3fxg_A 115 QMYRASMFYGRKGLPIAVISVIDLALWDLLGKVRNEPVYRLIGGATKERLDFYCTG--PEPT-------AAKAMGFWGGK 185 (455)
T ss_dssp HHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHTCBGGGGTTCCSCSEEEEEEES--SCHH-------HHHHHTCSCEE
T ss_pred HHHHhhhhccCCcchHHHHHHHHHHHHHHHHHHcCCCHHHHhCCccCCeeEEeecC--CCHH-------HHHHcCCCEEE
Confidence 998763 22 233578999999999999999999999999997 7899999874 2443 23578999999
Q ss_pred EecCC-------CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHH
Q 013681 225 LNVGR-------NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVS 296 (438)
Q Consensus 225 lKvG~-------d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~ 296 (438)
+|+|. ++++|+++|++||+ .||++.|+||||++|++++|++++++|+++++ .|||||++++|+++|++|+
T Consensus 186 lKv~~~~~~G~~~~~~di~rv~avRea~G~d~~L~vDaN~~wt~~~Ai~~~~~Le~~~l--~~iEEPl~~dd~~~la~L~ 263 (455)
T 3fxg_A 186 VPLPFCPDDGHEGLRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYTIELVKACLDLNI--NWWEECLSPDDTDGFALIK 263 (455)
T ss_dssp EECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHTGGGCC--SEEECCSCGGGGGGHHHHH
T ss_pred EcCCCCcccccccHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHhcccCCc--ceecCCCCcchHHHHHHHH
Confidence 99964 35789999999999 57999999999999999999999999999997 5999999999999999998
Q ss_pred Hhhcccc-CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHH
Q 013681 297 NFARDTY-GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALH 374 (438)
Q Consensus 297 ~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~h 374 (438)
+ ++ .+|||+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. .+++|
T Consensus 264 ~----~~~~iPIA~gEs~~s~~d~~~li~~~avDiiq~d~~~~GGItea~kIa~lA~a~Gv~v~~H~~~------~aslH 333 (455)
T 3fxg_A 264 R----AHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVMWLGGLTELLKVAALAAAYDVPVVPHASG------PYSYH 333 (455)
T ss_dssp H----HCTTSEEEECTTCCHHHHHHHHHTTCCCSEECCCTTTSSCHHHHHHHHHHHHTTTCCBCCCSCT------HHHHH
T ss_pred H----hCCCCeEECCCccCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEecchH------HHHHH
Confidence 6 45 589999999999999999999999999999999997 999999999999999999999863 37899
Q ss_pred HHhhcCCcceeecC--CCc-----ccccCCCCCceeeeCcEEecC--CCCCccceeChhhhhhcc
Q 013681 375 LAAGLGCIKYVNLN--TPF-----LLSEDPFVGGCEVSGAIYNFT--NARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 375 la~al~~~~~~e~~--~pl-----~~~~~~~~~~~~~~~G~~~~p--~~pGlGv~ld~~~l~~~~ 430 (438)
++++++|+.+.|+. .|. .+..+++.+.+.++||++.+| ++||||+++|++++++|.
T Consensus 334 laaa~pn~~~~E~~~~~~~~~~~~~~~~~l~~~~~~~~dG~i~vp~~d~PGLGvelde~~~~k~~ 398 (455)
T 3fxg_A 334 FQISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPIPTKGYLTTADLDKPGFGLTINPAARAKLI 398 (455)
T ss_dssp HHTTCTTCCCEEEECCSTTSSSCCCTTGGGBSCCCCCTTSEEETGGGCSSBTCCCBCHHHHTTEE
T ss_pred HHHhCCCCceEeecccccccccccchhcccccCCCeeeCCEEeCCCCCCCccCcccCHHHHHHhc
Confidence 99999999888753 221 122344555567899999999 999999999999999986
|
| >3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC, target 9462A, protein structure initiative; 1.87A {Bdellovibrio bacteriovorus HD100} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=476.10 Aligned_cols=311 Identities=16% Similarity=0.188 Sum_probs=262.4
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|+|+ ++.+++|++.||+++ ++++.++.++|+|+|++|++||||+.+.++++++..+. . +.+.+
T Consensus 2 MkI~---~~~~~~pl~~p~~~s-~~~~~~~~~~V~v~td~G~~G~GE~~~~~~~~~e~~~~--~---l~~~l-------- 64 (330)
T 3caw_A 2 IKIS---YSPYTLKPVQSLNAA-TAATAREGVLLKVEWNDGLYGFADLHPWPELGDLSLEE--Q---LSDLR-------- 64 (330)
T ss_dssp -CEE---EEEEEECBC-----------CEEEEEEEEECTTSCEEEEEECCCGGGTCCCHHH--H---HHHHH--------
T ss_pred cEEE---EEEEEeecCCCeEee-eEEEEeeEEEEEEEECCCCEEEEeecCCCCcCcccHHH--H---HHHHH--------
Confidence 6777 889999999999999 99999999999999999999999999887666543322 1 22222
Q ss_pred HHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeC-C--CCHHHHHHHHHHHhhcCCc
Q 013681 145 NFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIP-A--VSPAEASELASKYCKLGFS 221 (438)
Q Consensus 145 ~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~-~--~~~~~~~~~~~~~~~~Gf~ 221 (438)
| +...+++++|||+||||++||..|+|||+ || +++|+|.+++ . .+++++. +++++||+
T Consensus 65 ------l-----~~~~~~a~said~AlwDl~gk~~g~Pl~~--Gg--~~v~~~~~~~~~~~~~~~~~~----~~~~~G~~ 125 (330)
T 3caw_A 65 ------M-----GRMTTQIEQSIWLARRDALLRKEKKHVFD--GG--EKIKNNYLLSHFQDLKPGFLD----GLKNEGYN 125 (330)
T ss_dssp ------H-----TCCCHHHHHHHHHHHHHHHHHHTTCBTTT--TS--CCCCBCEEECTTSCCCTTHHH----HHHHHTCC
T ss_pred ------h-----ccchHHHHHHHHHHHHHHHHHHcCCcccc--CC--CceEEEEEecCCCCCCHHHHH----HHHHcCCc
Confidence 1 11236899999999999999999999999 88 8899999988 6 7888876 56688999
Q ss_pred EEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhh---CCCCCceEecCCCCC-ChhhHHHHHH
Q 013681 222 TLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLND---MGVIPVLFEQPVHRD-DWSGLHDVSN 297 (438)
Q Consensus 222 ~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~---~~l~~~~iEqPl~~~-d~~~~a~L~~ 297 (438)
+||+|+|.++++|++++++||+ |+++||||||++|++++|++++++|++ +++ .|||||++++ |++++ |+
T Consensus 126 ~~KiKvg~~~~~d~~~v~avr~--~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~l--~~iEqP~~~~~d~~~~--l~- 198 (330)
T 3caw_A 126 TVKVKMGRDLQKEADMLTHIAA--SGMRMRLDFNALGSWQTFEKFMVNLPLTVRPLI--EYVEDPFPFDFHAWGE--AR- 198 (330)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH--TTCEEEEECTTCSCHHHHHHHHHTSCTTTGGGE--EEEECCSSCCHHHHHH--HT-
T ss_pred EEEEecCCCHHHHHHHHHHHhC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCc--eEEECCCCCCccHHHH--HH-
Confidence 9999999999999999999999 999999999999999999999999999 886 5999999999 99888 53
Q ss_pred hhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHh
Q 013681 298 FARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377 (438)
Q Consensus 298 ~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~ 377 (438)
++ +|||+||+ +..+++++++.+++|++|+|++++|++ +++++|+++|+++++||++||+||++|++|+++
T Consensus 199 ----~~-iPIa~dEs--~~~~~~~~i~~~a~d~v~~k~~~~Gi~---~i~~~A~~~gi~~~~~~~~es~ig~aa~~hlaa 268 (330)
T 3caw_A 199 ----KL-AKIALDNQ--YDKVPWGKIASAPFDVIVIKPAKTDVD---KAVAQCQKWNLKLAVTSYMDHPVGVVHAVGVAM 268 (330)
T ss_dssp ----TT-SCEEESTT--GGGCCTTTCSSCSCSEEEECTTTSCHH---HHHHHHHHTTCEEEEBCCSCCHHHHHHHHHHHH
T ss_pred ----hc-CcEEeCCC--CHHHHHHHHHcCCCCEEEechhhccHH---HHHHHHHHcCCcEEEeCccCcHHHHHHHHHHHc
Confidence 47 99999999 899999999999999999999999988 999999999999999999999999999999999
Q ss_pred ----hcCCccee--ecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 378 ----GLGCIKYV--NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 378 ----al~~~~~~--e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
+++|...+ |++.+++ .++++.+++.++||++.+|++||||++ +++++|+..
T Consensus 269 ~~~~a~~~~~~~~~dl~~~~~-~~d~~~~~~~~~~G~~~~p~~PGlGv~---~~~~~~~~~ 325 (330)
T 3caw_A 269 ELKDKYGDMILESGCLTHRLY-QMDSFAAELSTQGPYLLKNKGTGVGFD---KLLEALTWY 325 (330)
T ss_dssp HHHHHHGGGBCCBBCCCGGGB-CCCTTGGGCCEETTEECCCSSSBTSCH---HHHHTSCCE
T ss_pred cchhcCCCcccccccCCchhh-hcccccCCceeECCEEECCCCCCCCHH---HHHHHhhhh
Confidence 88874332 5655444 677787888899999999999999999 899998763
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-59 Score=473.64 Aligned_cols=316 Identities=18% Similarity=0.255 Sum_probs=265.4
Q ss_pred cccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHHC--CC--
Q 013681 83 LSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKV-REACQFLRQSPPTTLNFALDEIARIL--PG-- 157 (438)
Q Consensus 83 ~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~-~~i~~~l~g~~~~~~~~~~~~l~~~~--~g-- 157 (438)
+++|.+ .+.++.++|+|+|++|++||||+.. ++. ....+ +.+.|.|+|+++.+++.+|+.|++.. .+
T Consensus 49 ~~ts~g-~~~~~~v~V~v~td~G~~G~Ge~~~-----g~~--~~~~i~~~l~p~LiG~dp~~ie~i~~~m~~~~~~~g~~ 120 (404)
T 3ekg_A 49 SRRSFG-INVLGTLVVEIEASDGNVGFAVTTG-----GEP--AAYIVEKHLARFLEGARVTDIERIWDQMYNSTLYYGRK 120 (404)
T ss_dssp CTGGGT-TTSSCEEEEEEEETTSCEEEEEEEC-----HHH--HHHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHGGGCSS
T ss_pred cccccC-cccccEEEEEEEECCCCEEEEeCCC-----cHH--HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhhhcCCC
Confidence 344544 4567889999999999999999863 221 11223 34889999999999999999998742 12
Q ss_pred ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-------
Q 013681 158 SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR------- 229 (438)
Q Consensus 158 ~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~------- 229 (438)
....+|++|||+|||||+||..|+|||+||||. ++++|+|.+.. +++ ..+++||+++|+|+|.
T Consensus 121 G~~~~A~sAID~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~g~--~~~-------~~~~~Gf~~~K~Kv~~g~~~g~~ 191 (404)
T 3ekg_A 121 GLVINTISGVDLALWDLLGKVRREPVHQLLGGAVRDELQFYATGA--RPD-------LAQKMGFIGGKMPLHHGPSEGEE 191 (404)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSEEEEEEESS--CHH-------HHHHTTCSEEEEECCCCGGGHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCCHHHHcCCCCCCeeEEecCCC--CHH-------HHHHcCCCEEEEecCCCCccccc
Confidence 234679999999999999999999999999996 78999997632 443 2357899999999964
Q ss_pred CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEE
Q 013681 230 NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308 (438)
Q Consensus 230 d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa 308 (438)
++++|++++++||+ .||++.|+||||++|++++|++++++|+++++ .|||||++++|++++++|++.. .+++|||
T Consensus 192 ~~~~di~~v~avRea~G~~~~L~vDaN~~w~~~~A~~~~~~Le~~~l--~~iEeP~~~~d~~~~a~l~~~~--~~pi~Ia 267 (404)
T 3ekg_A 192 GLKKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYGL--KWIEEALPPDDYWGYAELRRNA--PTGMMVT 267 (404)
T ss_dssp HHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTC--CEEECCSCTTCHHHHHHHHHHS--CTTCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCeEEecCCCCCCHHHHHHHHHHHhhcCC--cEEecCCCcccHHHHHHHHHhc--CCCeEEE
Confidence 35789999999999 57999999999999999999999999999997 5999999999999999998731 2345699
Q ss_pred EcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeec
Q 013681 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNL 387 (438)
Q Consensus 309 ~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~ 387 (438)
+||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. .+++|++++++|..++|+
T Consensus 268 ~gE~~~~~~~~~~li~~~a~dii~~d~~~~GGitea~kia~lA~a~gv~v~~h~~~------~a~~hl~aa~pn~~~~E~ 341 (404)
T 3ekg_A 268 TGEHEATRWGFRMLLEMGCCDIIQPDVGWCGGVTELLKISALADAHNALVVPHGSS------VYSYHFVATRQNSPFAEF 341 (404)
T ss_dssp ECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHHTTCEECCCCCT------HHHHHHHTTCTTCCSEEE
T ss_pred ecCccCCHHHHHHHHHcCCCCeEecChhhcCCccHHHHHHHHHHHcCCEEEecCcH------HHHHHHHHhCCCcceeee
Confidence 9999999999999999999999999999997 999999999999999999999852 378999999999988875
Q ss_pred CC--C-----cccccCCCCCceeeeCcEEecC--CCCCccceeChhh
Q 013681 388 NT--P-----FLLSEDPFVGGCEVSGAIYNFT--NARGQGGFLKWTI 425 (438)
Q Consensus 388 ~~--p-----l~~~~~~~~~~~~~~~G~~~~p--~~pGlGv~ld~~~ 425 (438)
.. | ..+..+++.+++.++||++.+| ++||||+++|+++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~dG~i~vP~~~~PGLGveld~~~ 388 (404)
T 3ekg_A 342 LMMAPKADQVVPMFHPQLLGEPVPENGRMRLSRLDQPGFGVTLNPEC 388 (404)
T ss_dssp ECCSTTSCSCCCTTTTTEETCCCCBTTEEEGGGCCSSBTSCEECTTS
T ss_pred ccccccccccchhhhhcccCCCcccCCEEECCCCCCCcccceECccc
Confidence 32 1 1223455666667899999999 9999999999987
|
| >4gfi_A Mandelate racemase/muconate lactonizing enzyme FA protein; putative L-Ala-L/D-Glu epimerase; HET: GLU; 1.90A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-59 Score=468.93 Aligned_cols=320 Identities=21% Similarity=0.276 Sum_probs=269.0
Q ss_pred EEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhH-hcCCCCCCHHH
Q 013681 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQF-LRQSPPTTLNF 146 (438)
Q Consensus 68 ~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~-l~g~~~~~~~~ 146 (438)
.+++++.+++||+.||++|.|+.++++.++|+|+ |+|++|||||+|.|.|+.........++.+.+. +.+.+. +.
T Consensus 5 r~l~~~~~r~pl~~pF~is~g~~t~~~~v~V~i~-d~G~~G~GE~~p~~~~get~e~~~~~l~~~~~~~~~~~~~---~~ 80 (329)
T 4gfi_A 5 RYLQATTERFAVAGSFTISRGTRTHADVVTCTIR-DGSFTGIGECVPYPRYGESIEGVTADIEAMADRVAAGLTR---QE 80 (329)
T ss_dssp CEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEE-ETTEEEEEEECCCGGGTCCHHHHHHHHHTTHHHHHHTCCH---HH
T ss_pred cEEEEEEEEEeccCcEEccCeEEEEeEEEEEEEE-ECCEEEEEeccCCCCCCcCHHHHHHHHHHHhhhhccccch---hh
Confidence 5788999999999999999999999999999996 689999999999887653222222233333333 333321 11
Q ss_pred HHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEE
Q 013681 147 ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKL 225 (438)
Q Consensus 147 ~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKl 225 (438)
. ...+ + .+++++|||+||||++||..|+|+|+||||. ++++++|.+++..+++++..++.+ ..||+.+|+
T Consensus 81 ~----~~~~-~--~~~a~aaid~AlwDl~gk~~g~pl~~llgG~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~Ki 151 (329)
T 4gfi_A 81 L----QQVM-K--PGAARNAVDCALWDLEAKMSGKRAAEQVLGQPAQPLVTAYTISLADPDTMAAKTAE--NAGRPLLKI 151 (329)
T ss_dssp H----HHHS-C--SSHHHHHHHHHHHHHHHHHHSCCHHHHHHSSCCCCEECCEEECCCCHHHHHHHHHH--TTTSSEEEE
T ss_pred H----Hhhc-c--cHHHHHHHHHHHHHHHhhhcCCChhHHhCCCCCCceeeeecccCCChHHHHHHHHh--hccccEEEe
Confidence 1 1112 2 2578999999999999999999999999886 688999999999999988766544 689999999
Q ss_pred ecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCC
Q 013681 226 NVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305 (438)
Q Consensus 226 KvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~i 305 (438)
|+|. ++|+++++++|+++|+++||||||++||+++|++++++|+++++ .|||||++++|.+.+.++ ++++
T Consensus 152 k~g~--~~d~~~v~~vr~~g~d~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~~------~~~i 221 (329)
T 4gfi_A 152 KTGT--ADDEARLRAVRAAAPEARIIIDANEGWNDDNIEYYLKLAAELKI--SLIEQPLPAGKDAMLARI------EHPV 221 (329)
T ss_dssp ECCS--SCCHHHHHHHHHHCTTSEEEEECTTCCCTTTHHHHHHHHHHTTC--CEEECCSCTTSCGGGGGS------CCSS
T ss_pred cCCc--ccHHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHhhhhcCc--eEEEecCCCccHHHHHHh------cCCC
Confidence 9996 56899999999999999999999999999999999999999997 499999999888776443 5789
Q ss_pred eEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcce
Q 013681 306 SVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKY 384 (438)
Q Consensus 306 PIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~ 384 (438)
||++||++.+..++.+.+ +++|++|+|++++| ++++++++++|+++|+++|+||++||+||++|++|+++++ .+
T Consensus 222 pia~dEs~~~~~d~~~~~--~a~d~i~~k~~~~GGit~~~~i~~~A~~~gi~~~~~~~~es~i~~aa~~~la~~~---~~ 296 (329)
T 4gfi_A 222 LICADESVHSTEDLAGLR--DRYDAINIKLDKTGGLTEALVMKAEAERLGFTIMVGCMLGTSLGMAPAVLVAQGT---AF 296 (329)
T ss_dssp EEEESTTCCTGGGSGGGT--TTCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHHHHTTTC---SE
T ss_pred CchhccCCCCHHHHHHHh--hccCeEEecCceeCCHHHHHHHHHHHHHCCCEEEECCcchhHHHHHHHHHHHhCC---Ce
Confidence 999999999999987653 58999999999998 9999999999999999999999999999999999998754 57
Q ss_pred eecCCCcccccCCCCCceeeeCcEEecCCCCCc
Q 013681 385 VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQ 417 (438)
Q Consensus 385 ~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGl 417 (438)
+|+++|+++.+|+.+ ..+.||.+.+|++|||
T Consensus 297 ~dld~~~~l~~d~~~--~~~~dG~~~~P~~PGL 327 (329)
T 4gfi_A 297 ADLDGPLLLAEDRDP--GLVYEGSLVYPARPEL 327 (329)
T ss_dssp ECCCHHHHBSSCCSS--CCCEETTEECCCCTTT
T ss_pred eccCcchhhhccCCC--CcEEcCeEECCCCCCC
Confidence 799999988887643 3456788999999997
|
| >1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=460.07 Aligned_cols=319 Identities=24% Similarity=0.324 Sum_probs=267.1
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhc-CCCCCCH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLR-QSPPTTL 144 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~-g~~~~~~ 144 (438)
+|++++++.+++|++.||.++.++.+.++.++|+|+ ++|++||||+.+.+.++.+.......++.++|.+. |.+ .
T Consensus 3 ~i~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~v~-d~G~~G~GE~~~~~~~g~~~~~~~~~i~~~~~~l~~~~~---~ 78 (324)
T 1jpd_X 3 HMRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSVVPQLEKGLT---R 78 (324)
T ss_dssp SCCEEEEEEEEEEBSCC------CCSEEEEEEEEEE-ETTEEEEEEECCCGGGTCCHHHHHHHHHTTHHHHHTTCC---H
T ss_pred ceEEEEEEEEEecccccEEecCeeEEEeeEEEEEEE-eCCceEEEEeeCCCCcCCCHHHHHHHHHHHHHHHhcCCC---H
Confidence 477999999999999999999999999999999999 68999999999887654322223333455677774 544 3
Q ss_pred HHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCcee-eeeeeCCCCHHHHHHHHHHHhhcCCcEE
Q 013681 145 NFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLS-TAITIPAVSPAEASELASKYCKLGFSTL 223 (438)
Q Consensus 145 ~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip-~~~~i~~~~~~~~~~~~~~~~~~Gf~~i 223 (438)
+.+++ + ++ .+++++|||+||||++||..|+|||+||||..++.+ ..++++.++++++.+++++++++||+++
T Consensus 79 ~~~~~-~---~~---~~~a~~aid~AlwDl~~k~~g~Pl~~llGg~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~G~~~~ 151 (324)
T 1jpd_X 79 EELQK-I---LP---AGAARNALDCALWDLAARRQQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLL 151 (324)
T ss_dssp HHHHH-H---SC---SSHHHHHHHHHHHHHHHHTTTCCHHHHHTCCCCSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHH-h---Cc---cHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCCcceeEEeeCCCHHHHHHHHHHHHHcCCCEE
Confidence 44322 2 22 257899999999999999999999999999754332 2345667799999999999999999999
Q ss_pred EEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhcccc
Q 013681 224 KLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY 303 (438)
Q Consensus 224 KlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~ 303 (438)
|+|+|. ++|++++++||+..|++.|++|||++|++++|++++++|+++++ .|||||++++|+++++++ ++
T Consensus 152 KiKvg~--~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l------~~ 221 (324)
T 1jpd_X 152 KVKLDN--HLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IH 221 (324)
T ss_dssp EEECCS--SCHHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHHHHTTC--CEEECCSCTTSCGGGGSS------CC
T ss_pred EEEeCC--chHHHHHHHHHHhCCCCEEEEECcCCCCHHHHHHHHHHHHhCCC--CEEECCCCCCCHHHHHhc------cC
Confidence 999997 47899999999977999999999999999999999999999997 499999999999999876 36
Q ss_pred CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCc
Q 013681 304 GISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 304 ~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~ 382 (438)
++||++||++.+..+++++++. +|++|+|++++| ++++++++++|+++|+++++|+++||+|+++|++|+++.+
T Consensus 222 ~ipIa~dE~~~~~~~~~~~~~~--~~~i~ik~~~~GGit~~~~i~~~A~~~g~~~~~~~~~es~i~~aa~~~la~~~--- 296 (324)
T 1jpd_X 222 PLPICADESCHTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISAALPLVPQV--- 296 (324)
T ss_dssp SSCEEESTTCSSGGGHHHHBTT--BSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEECCCSCCHHHHHHHGGGGGGC---
T ss_pred CCCEEEcCCCCCHHHHHHHHhh--CCEEEEcchhhCcHHHHHHHHHHHHHcCCcEEEeCcchHHHHHHHHHHHhhcC---
Confidence 8999999999999999999853 899999999997 9999999999999999999999999999999999998765
Q ss_pred ceeecCCCcccccCCCCCceeeeCcEEec
Q 013681 383 KYVNLNTPFLLSEDPFVGGCEVSGAIYNF 411 (438)
Q Consensus 383 ~~~e~~~pl~~~~~~~~~~~~~~~G~~~~ 411 (438)
.+.|+++|+++.+|++ +++.++||++.+
T Consensus 297 ~~~~l~~~~~~~~d~~-~~~~~~~G~i~~ 324 (324)
T 1jpd_X 297 SFADLDGPTWLAVDVE-PALQFTTGELHL 324 (324)
T ss_dssp SEECCCGGGGBSSCCS-SCCEEETTEEEC
T ss_pred CccCCCchhhhhccCC-CCcEEECCEEeC
Confidence 4678999988788886 668889998864
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-58 Score=473.36 Aligned_cols=355 Identities=17% Similarity=0.211 Sum_probs=288.9
Q ss_pred eeEEEEEEEEEEeeccCCcccCCe--eEeeeeEEEEEEEEcC--CcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLS--SVENVENVAIRVELSN--GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~--~~~~~~~~lV~v~t~~--G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~ 140 (438)
|||++|+++.+++|++.|+..+.. +.+.++.++|+|+|++ |++||||+.+.+. +.+ .....++.+.|.|+|++
T Consensus 2 mkI~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~~~V~v~td~~~G~~G~Ge~~~~g~-~~~--~v~~~i~~l~~~liG~d 78 (441)
T 2hxt_A 2 RTIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGR-GND--VQTAAVAALAEHVVGLS 78 (441)
T ss_dssp CBEEEEEEEEEECCGGGTTTTCCSSCSSCCCEEEEEEEEESSCTTCEEEEEEEECST-THH--HHHHHHHTTHHHHTTCB
T ss_pred CcEEEEEEEEEEecCCCCcCcccccccCCCcceEEEEEEECCCCCCEEEEeecCCCC-CcH--HHHHHHHHHHHHHcCCC
Confidence 799999999999999999876543 2234578999999998 9999999987532 222 12233456889999999
Q ss_pred CCCHHH----HHHHHHHH----CCC---ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCC------------------
Q 013681 141 PTTLNF----ALDEIARI----LPG---SEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS------------------ 191 (438)
Q Consensus 141 ~~~~~~----~~~~l~~~----~~g---~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~------------------ 191 (438)
+.+++. +|+.|... ..+ ...+++++|||+||||++||..|+|||+||||..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~A~said~AlwDl~gk~~g~Pl~~lLGG~~~~~~~~~~~~~~~~d~~~ 158 (441)
T 2hxt_A 79 VDKVIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELTPEQLVDTIDFRYLSDALT 158 (441)
T ss_dssp HHHHHHCHHHHHHHHHTCHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHTSCHHHHHHHCCCTTCTTTCC
T ss_pred hHHHHhhHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCcccccccccccccccccc
Confidence 887754 56666421 111 1235799999999999999999999999999853
Q ss_pred ------------------------Cceeeeeee--CC-CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-
Q 013681 192 ------------------------NSLSTAITI--PA-VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA- 243 (438)
Q Consensus 192 ------------------------~~ip~~~~i--~~-~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~- 243 (438)
+++|.|.+. +. .+++++.+.+++++++||+++|+|+|.+++.|++++++||+
T Consensus 159 ~~~~~~~~~~~~~~~~~r~~~~~~~~vp~y~~~~g~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~d~e~v~avR~a 238 (441)
T 2hxt_A 159 RDEALAILRDAQPQRAARTATLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAA 238 (441)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHCEEEEEEEEECTTSCHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccchhhhhhcccCCcceeEecccccCCCHHHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHh
Confidence 257777542 22 38899999999999999999999999999999999999999
Q ss_pred hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHH
Q 013681 244 VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDVQKV 322 (438)
Q Consensus 244 ~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~l 322 (438)
.++++.|+||+|++|++++|++++++|+++++ .|||||++++|++++++|++ ++ ++||++||++.++.+++++
T Consensus 239 ~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~~----~~~~iPIa~dE~~~~~~~~~~~ 312 (441)
T 2hxt_A 239 IGPDIAMAVDANQRWDVGPAIDWMRQLAEFDI--AWIEEPTSPDDVLGHAAIRQ----GITPVPVSTGEHTQNRVVFKQL 312 (441)
T ss_dssp HCSSSEEEEECTTCCCHHHHHHHHHTTGGGCC--SCEECCSCTTCHHHHHHHHH----HHTTSCEEECTTCCSHHHHHHH
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC--CeeeCCCCHHHHHHHHHHHh----hCCCCCEEEeCCcCCHHHHHHH
Confidence 68999999999999999999999999999997 49999999999999999986 45 6999999999999999999
Q ss_pred HHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHH-HHHh-----hcCCc--ceeecCCCccc
Q 013681 323 MQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL-HLAA-----GLGCI--KYVNLNTPFLL 393 (438)
Q Consensus 323 l~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~-hla~-----al~~~--~~~e~~~pl~~ 393 (438)
++.+++|++++|++++| ++++++++++|+++|+++++|+ +++++++++ |++. ..++. .++|+... +
T Consensus 313 i~~~~~d~v~ik~~~~GGite~~~ia~~A~~~g~~~~~h~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~e~~~~--~ 387 (441)
T 2hxt_A 313 LQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHA---GGVGLCELVQHLAMADFVAITGKMEDRAIEFVDH--L 387 (441)
T ss_dssp HHHTCCSEECCCTTTSSHHHHHHHHHHHHHHTTCEECCCC---CSTTHHHHHHHHHHHHHHHTTCCCTTCCEEECCS--S
T ss_pred HHcCCCCEEEeCcceeCCHHHHHHHHHHHHHcCCeEEEec---ChHHHHHHHHHHHhcchhhccccccCcceeechh--h
Confidence 99999999999999997 9999999999999999999885 345555433 4432 22322 23443221 1
Q ss_pred ccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccccc
Q 013681 394 SEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVDCC 434 (438)
Q Consensus 394 ~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~~~ 434 (438)
.+.+.+++.++||++.+|++||||+++|++.+++|+++..
T Consensus 388 -~~~~~~~~~~~~G~i~~p~~PGlGve~d~~~l~~~~~~~~ 427 (441)
T 2hxt_A 388 -HQHFLDPVRIQHGRYLAPEVPGFSAEMHPASIAEFSYPDG 427 (441)
T ss_dssp -GGGBSSCCCEETTEECCCCSSBCSCCBCHHHHHHHBTTTS
T ss_pred -hhhccCCccccCCeEECCCCCCCCcccCHHHHHhccCCcc
Confidence 2344567888999999999999999999999999998653
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-55 Score=448.20 Aligned_cols=308 Identities=13% Similarity=0.202 Sum_probs=258.4
Q ss_pred eeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHHHHHHHHCC---C--ChhhHHHH
Q 013681 91 ENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARILP---G--SEFASVRA 165 (438)
Q Consensus 91 ~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~~l~~~~~---g--~~~~sa~~ 165 (438)
+.++.++|+|+|++|++||||+.+ ++.. .....+.+.|.|+|+++.+++.+|+.|.+... + ...+++++
T Consensus 67 ~~~~~v~V~v~td~G~~G~GE~~~-----g~~~-~~~v~~~l~p~LiG~d~~~~~~i~~~m~~~~~~~~g~~~~~~~A~s 140 (415)
T 2p3z_A 67 NVLGTLIVEVEAENRQTGFAVSTA-----GEMG-CFIVEKHLNRFIEGKCVSDIKLIHDQMLGATMYYSGSGGLVMNTIS 140 (415)
T ss_dssp TSSCEEEEEEEETTSCEEEEEEEC-----HHHH-HHHHHHTTHHHHTTSBTTCHHHHHHHHHHHHTTTSTTSSHHHHHHH
T ss_pred ccceEEEEEEEECCCCEEEEEecC-----CHHH-HHHHHHHHHHHHCCCChhhHHHHHHHHHHhhhcccCCCcchHHHHH
Confidence 367789999999999999999963 2211 11112348899999999999999999986431 1 23468999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-------CchHHHHH
Q 013681 166 GVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDV 237 (438)
Q Consensus 166 aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-------d~~~di~~ 237 (438)
|||+||||++||..|+|||+||||. ++++|+|.+. .++++ .+++||+++|+|+|. ++++|+++
T Consensus 141 aid~ALwDl~ak~~g~Pl~~lLGG~~~~~vp~y~~g--~~~~~-------~~~~G~~~~KiK~g~g~~~G~~~~~~d~~~ 211 (415)
T 2p3z_A 141 CVDLALWDLFGKVVGLPVYKLLGGAVRDEIQFYATG--ARPDL-------AKEMGFIGGKMPTHWGPHDGDAGIRKDAAM 211 (415)
T ss_dssp HHHHHHHHHHHHHHTCBHHHHTTCCSSSEEEEEEES--SCHHH-------HHHHTCSEEEEECCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHcCCCCCCceeeeecC--CCHHH-------HHHhCcceEEEecccCcccccccHHHHHHH
Confidence 9999999999999999999999996 6789998763 35543 346899999999963 46789999
Q ss_pred HHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC--CeEEEcCCCC
Q 013681 238 LQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG--ISVVADESCR 314 (438)
Q Consensus 238 l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~--iPIa~dEsl~ 314 (438)
|++||+ .++++.|+||||++|++++|++++++|+++++ .|||||++++|++++++|++ +++ +||++||++.
T Consensus 212 v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i--~~iEqPl~~~d~~~~~~l~~----~~~~~ipIa~dE~~~ 285 (415)
T 2p3z_A 212 VADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNL--KWIEECLPPQQYEGYRELKR----NAPAGMMVTSGEHHG 285 (415)
T ss_dssp HHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTC--CEEECCSCTTCHHHHHHHHH----HSCTTCEEEECTTCC
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCC--ceEeCCCCcchHHHHHHHHH----hcCCCCcEEcCCCCC
Confidence 999999 58999999999999999999999999999987 59999999999999999986 466 9999999999
Q ss_pred CHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCC---
Q 013681 315 SLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP--- 390 (438)
Q Consensus 315 ~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~p--- 390 (438)
+..+++++++.+ +|++|+|++++| ++++++++++|+++|+++++|+. + .+++|+++++++..+.|+...
T Consensus 286 ~~~~~~~~i~~~-~d~i~ik~~~~GGitea~~ia~lA~~~gi~v~~h~~---~---~a~~hlaaa~p~~~~~e~~~~~~~ 358 (415)
T 2p3z_A 286 TLQSFRTLAETG-IDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVPHGS---S---VYSHHAVITFTNTPFSEFLMTSPD 358 (415)
T ss_dssp SHHHHHHHHHTT-CSEECCCHHHHTCHHHHHHHHHHHHHTTCCBCCCCC---H---HHHHHHHTTCTTCCCEEEECCSTT
T ss_pred CHHHHHHHHHcC-CCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCh---H---HHHHHHHHhCCCCccccccccccc
Confidence 999999999999 999999999998 99999999999999999999874 1 368999999999888875321
Q ss_pred ----cccccCCCCCceeeeCcEEecC--CCCCccceeChhhh
Q 013681 391 ----FLLSEDPFVGGCEVSGAIYNFT--NARGQGGFLKWTIV 426 (438)
Q Consensus 391 ----l~~~~~~~~~~~~~~~G~~~~p--~~pGlGv~ld~~~l 426 (438)
..+..+.+.++..++||++.+| ++||||+++|++++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~G~l~~p~P~~PGLGveld~~~~ 400 (415)
T 2p3z_A 359 CSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCH 400 (415)
T ss_dssp SSSCCCTTTTTEETCCCCBTTEEEGGGGCSSBTSCEECTTSC
T ss_pred cccccchhhhhccCCCeeECCEEECCCCCCCCcceeECHHHH
Confidence 1122233333455689999998 99999999999985
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-54 Score=430.62 Aligned_cols=298 Identities=20% Similarity=0.216 Sum_probs=257.9
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHH-HhhHhcCCCCCC
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVRE-ACQFLRQSPPTT 143 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~-i~~~l~g~~~~~ 143 (438)
+|++++++.+++|++.||.++.++++.++.++|+|+|+ |++||||+.+.++++++..+ ....+++ +.+.+.|+ .+
T Consensus 2 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~V~i~td-G~~G~GE~~~~~~~~~e~~~~~~~~l~~~~~~~l~g~--~~ 78 (322)
T 1r6w_A 2 HMRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREG-EREGWGEISPLPGFSQETWEEAQSVLLAWVNNWLAGD--CE 78 (322)
T ss_dssp CCEEEEEEEEEEEBCTTCBC-CCBCCEEEEEEEEEEET-TEEEEEEECCCTTTCSSCHHHHHHHHHHHHHHHTTSC--CC
T ss_pred cceEEEEEEEEEeccCCeEeccEEEEeeeEEEEEEEEC-CeEEEEEecCCCCCCccCHHHHHHHHHHHHHHhhCCh--hh
Confidence 58899999999999999999999999999999999996 99999999998877665433 3333443 66888887 22
Q ss_pred HHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEE
Q 013681 144 LNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTL 223 (438)
Q Consensus 144 ~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~i 223 (438)
+ .+ .+++++|||+||||++||..|+|+| +.+|+| ..+++++.+.++++ +||+++
T Consensus 79 l-----------~~--~~~a~~aid~ALwDl~gk~~g~p~~-------~~v~~~----~~~~~~~~~~a~~~--~G~~~~ 132 (322)
T 1r6w_A 79 L-----------PQ--MPSVAFGVSCALAELTDTLPQAANY-------RAAPLC----NGDPDDLILKLADM--PGEKVA 132 (322)
T ss_dssp C-----------CS--SHHHHHHHHHHHHHHTTCSCCCSCC-------CCCCEE----CSCHHHHHHHHHTC--CSSEEE
T ss_pred c-----------cc--ChHHHHHHHHHHHHhcCCCCCCCcc-------ceEEEe----CCCHHHHHHHHHHh--CCCceE
Confidence 1 22 4789999999999999999999875 346665 46888887777664 799999
Q ss_pred EEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhC---CCCCceEecCCCCCChhhHHHHHHhh
Q 013681 224 KLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDM---GVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 224 KlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~---~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
|+|+|. ++++|++++++||+..|+++||||||++|++++|++++++|+++ ++ .|||||++ +++++++|++
T Consensus 133 KiKvG~~~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~i--~~iEqP~~--~~~~~~~l~~-- 206 (322)
T 1r6w_A 133 KVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRI--AFLEEPCK--TRDDSRAFAR-- 206 (322)
T ss_dssp EEECSSSCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGE--EEEECCBS--SHHHHHHHHH--
T ss_pred EEEeCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhhccCCe--eEEECCCC--ChHHHHHHHH--
Confidence 999997 89999999999999779999999999999999999999999998 76 59999997 4889999986
Q ss_pred ccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhh
Q 013681 300 RDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378 (438)
Q Consensus 300 r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~a 378 (438)
++++||++||++.+ .++ ++++.+++|++|+|++++| ++++++++++|+++|+++++|+++||+||++|++|++++
T Consensus 207 --~~~ipIa~dE~~~~-~~~-~~~~~~a~d~i~ik~~~~GGit~~~~ia~~A~~~gi~~~~~~~~es~ig~aa~~hlaa~ 282 (322)
T 1r6w_A 207 --ETGIAIAWDESLRE-PDF-AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLARIAAW 282 (322)
T ss_dssp --HHCCCEEESGGGGS-TTC-CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEBCSSCCHHHHHHHHHHHHH
T ss_pred --hCCCCEEeCCCCCC-hhH-hhhhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCcEEEECccccHHHHHHHHHHHHh
Confidence 68999999999999 456 6668889999999999997 999999999999999999999999999999999999999
Q ss_pred cCCcceeecCCCcccccCCCCCce
Q 013681 379 LGCIKYVNLNTPFLLSEDPFVGGC 402 (438)
Q Consensus 379 l~~~~~~e~~~pl~~~~~~~~~~~ 402 (438)
+++..+.+++++.++.+|++.+++
T Consensus 283 ~~~~~~~~l~t~~~~~~d~~~~~~ 306 (322)
T 1r6w_A 283 LTPDTIPGLDTLDLMQAQQVRRWP 306 (322)
T ss_dssp HCTTSCCBCTTGGGBSCEESSCCT
T ss_pred cCCCCccCCCchhhhhhccccCCc
Confidence 988888899998887777665544
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-54 Score=444.11 Aligned_cols=309 Identities=17% Similarity=0.189 Sum_probs=261.0
Q ss_pred eeEeeeeEEEEEEEEcCCcEEEEEEecC---------CCCCchHHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHHCC-
Q 013681 88 SSVENVENVAIRVELSNGCVGWGEVAVV---------PLVTGDQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARILP- 156 (438)
Q Consensus 88 ~~~~~~~~~lV~v~t~~G~~G~GE~~~~---------~~~s~~~~~~~~~~~~-i~~~l~g~~~~~~~~~~~~l~~~~~- 156 (438)
++.+.++.++|+|+|++|++|||||.+. |.|+++. ....+++ ++|.|+|+++.+++.+|+.|.....
T Consensus 45 ~~~~~~~~v~V~v~td~G~~G~GE~~~~~~sGa~~r~~~~~~~~--~~~~i~~~l~p~LiG~d~~~~~~i~~~l~~~~~~ 122 (413)
T 1kko_A 45 SVRQAGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEH--FIPFLNDHIKPLLEGRDVDAFLPNARFFDKLRID 122 (413)
T ss_dssp SSEEEEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHHH--HHHHHHHHTHHHHTTCBCSCSHHHHHHHHHCEET
T ss_pred eEEEecceEEEEEEECCCCEEEEEecccccccccccCccccHHH--HHHHHHHHHHHHHcCCChHhHHHHHHHHHhhhcc
Confidence 4567889999999999999999999976 4454422 2233444 7899999999999999999976432
Q ss_pred CC-hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC------CCceeeeeeeCC---CCHHHHHHHHHHHhhcC-CcEEEE
Q 013681 157 GS-EFASVRAGVEMALIDAVANSIDIPLWRLFGGA------SNSLSTAITIPA---VSPAEASELASKYCKLG-FSTLKL 225 (438)
Q Consensus 157 g~-~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~------~~~ip~~~~i~~---~~~~~~~~~~~~~~~~G-f~~iKl 225 (438)
+. ..+++++||||||||++||..|+|||+||||. ++++|+|.+.+. ++++++.+++.+++++| |++||+
T Consensus 123 ~~~~~~~A~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~l~~~~vp~y~~~g~~~~~~~~~~~~~~~~~~~~G~~~~iK~ 202 (413)
T 1kko_A 123 GNLLHTAVRYGLSQALLDATALASGRLKTEVVCDEWQLPCVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEE 202 (413)
T ss_dssp TEECCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTTCCCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCCC
T ss_pred cCccHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCccccccccCCeEEEEecCccccCCHHHHHHHHHHHHhCCCccEEEE
Confidence 21 23789999999999999999999999999984 568888876332 36788888888888899 999999
Q ss_pred ecCCCchH-------HHHHHHHHHh-hCCCcEEEEeCCC------CCCHHHHHHHHHHhhhCCCCCc-eEecCCC----C
Q 013681 226 NVGRNITA-------DFDVLQAIHA-VHPHCSFILDANE------GYTSEEAVEVLGKLNDMGVIPV-LFEQPVH----R 286 (438)
Q Consensus 226 KvG~d~~~-------di~~l~aiR~-~~~~~~L~vDAN~------~~s~~~A~~~l~~L~~~~l~~~-~iEqPl~----~ 286 (438)
|+|.+.++ |++++++||+ .++++.|+||||+ +|++++|++++++|+++++.+. |||||++ +
T Consensus 203 KvG~~~~~~~~~l~~d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~~L~~~~~~~~l~iEqP~~~~~~~ 282 (413)
T 1kko_A 203 KLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKP 282 (413)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEEECCCCCSSHH
T ss_pred ecCCChhhHHHHHHHHHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHHHHHhccCCcceEEECCcCCCCCc
Confidence 99986554 4489999998 5789999999999 9999999999999999654322 9999999 6
Q ss_pred CChhhHHHHHHhhcc-ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-
Q 013681 287 DDWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI- 363 (438)
Q Consensus 287 ~d~~~~a~L~~~~r~-~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~- 363 (438)
+|+++|++|++.+.+ .+++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.
T Consensus 283 ~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~~A~~~gi~~~~~~~~~ 362 (413)
T 1kko_A 283 DQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCN 362 (413)
T ss_dssp HHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTT
T ss_pred ccHHHHHHHHHhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEecCCCC
Confidence 799999999862100 07899999999999999999999999999999999998 999999999999999999999996
Q ss_pred chhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhh
Q 013681 364 ETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (438)
Q Consensus 364 es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~ 425 (438)
||++++++++|+++++++ ..+|++||+|++.++.+
T Consensus 363 et~i~~aa~~hlaaa~~~---------------------------~~ip~kpG~g~~~~~~~ 397 (413)
T 1kko_A 363 ETEISARTCVHVALAARP---------------------------MRMLIKPGMGFDEGLNI 397 (413)
T ss_dssp SCHHHHHHHHHHHHHHCC---------------------------SEEECCSCSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCC---------------------------CcccCCCCCCCCccHHH
Confidence 999999999999998743 34788899999887653
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=436.31 Aligned_cols=305 Identities=16% Similarity=0.219 Sum_probs=259.5
Q ss_pred cCCcccCCeeE-eeeeEEEEEEEEcCCcEEEEEEecCCCC--Cc----hH-HHHHHHHHH-HhhHhcCCCCCCHHHHHHH
Q 013681 80 SAPLSLGLSSV-ENVENVAIRVELSNGCVGWGEVAVVPLV--TG----DQ-TKALVKVRE-ACQFLRQSPPTTLNFALDE 150 (438)
Q Consensus 80 ~~p~~~s~~~~-~~~~~~lV~v~t~~G~~G~GE~~~~~~~--s~----~~-~~~~~~~~~-i~~~l~g~~~~~~~~~~~~ 150 (438)
..||+++.+++ +.++.++|+|+|++|++|||||.+.+.+ +. +. ......+++ ++|.|+|+++.+++.+|+.
T Consensus 36 ~~P~~~~~~~~~~~~~~v~V~v~td~G~~G~GE~~~~~~~g~g~~e~~~~~~~~~~~i~~~l~p~L~G~d~~~~~~i~~~ 115 (413)
T 1kcz_A 36 GSTVTEGFTQVRQKGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEE 115 (413)
T ss_dssp SCCCSTTCSSSEEECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHH
T ss_pred CCCEEcccceEeecCcEEEEEEEECCCCEEEEEEccccccccCcccccccHHHHHHHHHHHHHHHHcCCChhhHHHHHHH
Confidence 56999998887 8899999999999999999999987532 11 11 123334554 8999999999999999999
Q ss_pred HHHHC-CC-ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC------CCCceeeeeeeCC---CCHHHHHHHHHHHhhcC
Q 013681 151 IARIL-PG-SEFASVRAGVEMALIDAVANSIDIPLWRLFGG------ASNSLSTAITIPA---VSPAEASELASKYCKLG 219 (438)
Q Consensus 151 l~~~~-~g-~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg------~~~~ip~~~~i~~---~~~~~~~~~~~~~~~~G 219 (438)
|.... .+ ...+++++|||+||||++||..|+|||+|||| .++++|+|.+.+. .+++++.+++++++++|
T Consensus 116 l~~~~~~g~~~~~~a~~aid~AlwDl~ak~~g~Pl~~lLGg~~~~~~~~~~vp~~~~~g~~~~~~~~~~~~~a~~~~~~G 195 (413)
T 1kcz_A 116 FDKMTVNGNRLHTAIRYGITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHA 195 (413)
T ss_dssp HHHCEETTEECCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHSTTCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEEC
T ss_pred HHhcccCCcchHHHHHHHHHHHHHHHHHHHhCCcHHHHhcccccCcCccCCeeeeEecCccccCCHHHHHHHHHHHHHhc
Confidence 96532 22 12468999999999999999999999999997 4678999876542 45788888888888999
Q ss_pred -CcEEEEecCCC---chH----HHHHHHHHHh-hCCCcEEEEeCCCC------CCHHHHHHHHHHhhhC--CCCCceEec
Q 013681 220 -FSTLKLNVGRN---ITA----DFDVLQAIHA-VHPHCSFILDANEG------YTSEEAVEVLGKLNDM--GVIPVLFEQ 282 (438)
Q Consensus 220 -f~~iKlKvG~d---~~~----di~~l~aiR~-~~~~~~L~vDAN~~------~s~~~A~~~l~~L~~~--~l~~~~iEq 282 (438)
|+++|+|+|.+ ..+ |++++++||+ .++++.|+||||++ |++++|++++++|+++ ++. .||||
T Consensus 196 ~~~~~KiKvG~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~~~~~~~a~~~~~~L~~~~~~i~-~~iEq 274 (413)
T 1kcz_A 196 LINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFH-LRIEG 274 (413)
T ss_dssp CCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSC-EEEEC
T ss_pred chhheeeccCCCccchhhHHHHHHHHHHHHHHhcCCCceEEEecCCCcccccCCCHHHHHHHHHHHHhhcCCcc-eEEec
Confidence 99999999975 444 8999999998 57899999999999 9999999999999998 552 49999
Q ss_pred CCCCC----ChhhHHHHHHhhcc-ccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCe
Q 013681 283 PVHRD----DWSGLHDVSNFARD-TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLH 356 (438)
Q Consensus 283 Pl~~~----d~~~~a~L~~~~r~-~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~ 356 (438)
|++.+ |+++|++|++.+++ .+++||++||++.+..+++++++.+++|++|+|++++| ++++++++++|+++|++
T Consensus 275 P~~~~~~~~d~~~~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit~a~~i~~~A~~~gi~ 354 (413)
T 1kcz_A 275 PMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMG 354 (413)
T ss_dssp SBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCE
T ss_pred CCCCCCCcccHHHHHHHHHhhhcCCCCCcEEeCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCE
Confidence 99654 89999999862100 17899999999999999999999999999999999997 99999999999999999
Q ss_pred EEEcc-CCchhHHHHHHHHHHhhcCCccee
Q 013681 357 LMIDG-MIETRLATGFALHLAAGLGCIKYV 385 (438)
Q Consensus 357 ~~~~s-~~es~ig~~a~~hla~al~~~~~~ 385 (438)
+++|+ ++||+++++|++|+++++++..+.
T Consensus 355 ~~~~~~~~es~i~~~a~~hlaaa~~~~~i~ 384 (413)
T 1kcz_A 355 AYCGGTCNETNRSAEVTTNIGMACGARQVL 384 (413)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTCSEEE
T ss_pred EEecCCCCCCHHHHHHHHHHHhcCCCCcee
Confidence 99988 789999999999999999886543
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-52 Score=414.84 Aligned_cols=288 Identities=22% Similarity=0.257 Sum_probs=241.8
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHH-HHHHHHhhHhcCCCCCCHHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL-VKVREACQFLRQSPPTTLNFA 147 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~-~~~~~i~~~l~g~~~~~~~~~ 147 (438)
+++++.+++|++.||.++.++++.++.++|+|+|++|++||||+.+.+.++.++.+.. ..++.+.+.+ ++.+++.+
T Consensus 4 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~td~G~~G~GE~~~~~~~~~e~~~~~~~~~~~l~~~l---~~~~~~~~ 80 (332)
T 2ozt_A 4 RWQWRIYEEPLQEPLTTAQGVWRSRSGIYLRLEDEQGQVGYGEIAPLPGWGSETLNADIALCQQLPGHL---TPEIMATI 80 (332)
T ss_dssp EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCEEEEEECCCTTSSSCCHHHHHHHHHHSCSEE---CHHHHTTS
T ss_pred EEEEEEEEeecCCCcEecCEEEEeeeEEEEEEEECCCCEEEEEecCCCCCCcccHHHHHHHHHHhhccC---CHHHHHHH
Confidence 6889999999999999999999999999999999999999999998877766443322 2222333333 33333322
Q ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEec
Q 013681 148 LDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNV 227 (438)
Q Consensus 148 ~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKv 227 (438)
|+ ..+++++|||+||| ++|| ||+...+ +.|... +.+++++.+++++++++||+++|+|+
T Consensus 81 ~~---------~~~~a~~aid~Al~-l~gk---------lgg~~~~-~~y~~~-~~~~e~~~~~a~~~~~~G~~~~KiKv 139 (332)
T 2ozt_A 81 PE---------ALPAAQFGFATAWQ-SVGR---------LPYRVRP-WPICAL-LGSGQAALEQWQQSWQRGQTTFKWKV 139 (332)
T ss_dssp CT---------TCHHHHHHHHHHHH-HTTT---------CSCCCCC-CCBCEE-ECTGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred HH---------HhHHHHHHHHHHHH-Hhcc---------cCCCCCC-cceEEe-cCChHHHHHHHHHHHHcCCcEEEEEe
Confidence 22 12578999999999 8887 4554324 555332 35788899999999999999999999
Q ss_pred CC-CchHHHHHHHHHHhh-CCCcEEEEeCCCCCCHHHHHHHHHHhhhC---CCCCceEecCCCCCChhhHHHHHHhhccc
Q 013681 228 GR-NITADFDVLQAIHAV-HPHCSFILDANEGYTSEEAVEVLGKLNDM---GVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (438)
Q Consensus 228 G~-d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s~~~A~~~l~~L~~~---~l~~~~iEqPl~~~d~~~~a~L~~~~r~~ 302 (438)
|. ++++|++++++||+. +++++|+||||++|++++|++++++|+++ ++ .|||||++++|++++++|++ +
T Consensus 140 g~~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~d~~~~~~l~~----~ 213 (332)
T 2ozt_A 140 GVMSPEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKI--EYVEQPLPPDQWQALLSLAQ----T 213 (332)
T ss_dssp SSSCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHHHHHCCTTE--EEEECCSCTTCHHHHHHHHH----H
T ss_pred CCCChHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHHHHHHHHhhccCCc--ceeECCCCCCCHHHHHHHHH----h
Confidence 97 689999999999995 78999999999999999999999999999 76 59999999999999999986 6
Q ss_pred cCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHc--CCeEEEccCCchhHHHHHHHHHHhhc
Q 013681 303 YGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKS--GLHLMIDGMIETRLATGFALHLAAGL 379 (438)
Q Consensus 303 ~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~--gi~~~~~s~~es~ig~~a~~hla~al 379 (438)
+++||++||++.+..+++++++.+++|++++|++++| ++ +++++|+++ |+++++|+++||+||++|++|+++++
T Consensus 214 ~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~ik~~~~GGi~---~i~~~A~~~~~gi~~~~~~~~es~i~~aa~~hlaa~~ 290 (332)
T 2ozt_A 214 VTTAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGDPD---SLSLLLRRGLEPQRLVFSSALEGAIARTAIFHLLETW 290 (332)
T ss_dssp CSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHSCHH---HHHHHHHTTCCGGGEEEBCCSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEChhhhCCHH---HHHHHHHHhCCCCcEEEeCCcchHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999997 87 778899999 99999999999999999999999998
Q ss_pred CCcceeecCC
Q 013681 380 GCIKYVNLNT 389 (438)
Q Consensus 380 ~~~~~~e~~~ 389 (438)
++.....++.
T Consensus 291 ~~~~~~gl~t 300 (332)
T 2ozt_A 291 QPCHALGFGV 300 (332)
T ss_dssp CCCSCBBCCC
T ss_pred CCCcCCcCCc
Confidence 8654444444
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=401.66 Aligned_cols=288 Identities=23% Similarity=0.338 Sum_probs=233.4
Q ss_pred EEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHHHHH
Q 013681 69 RAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFAL 148 (438)
Q Consensus 69 ~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~~~~ 148 (438)
+++++.+++||+.||+ ..+.++.++|+ |.+|||||.|++.++.+ . . +
T Consensus 2 ~i~~~~~~~Pl~~pf~----~~~~r~~~lV~-----G~~G~GE~~p~~~~~~~-----~----~---------------~ 48 (327)
T 2opj_A 2 SLTGRAFAIPLRTRFR----GITVREGMLVR-----GAAGWGEFSPFAEYGPR-----E----C---------------A 48 (327)
T ss_dssp CCSEEEEEEEEEEEET----TEEEEEEEEEE-----CSSCEEEECCCTTCCHH-----H----H---------------H
T ss_pred EEEEEEEEEeeccCce----eeeEEEEEEEE-----cCEEEEEecCCCCCCHH-----H----H---------------H
Confidence 4678899999999997 34678888883 99999999998766431 0 0 0
Q ss_pred HHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCCCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecC
Q 013681 149 DEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVG 228 (438)
Q Consensus 149 ~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG 228 (438)
..+++|||||||| +| |+.++++|+|.+++..+++++.+.++ ++||++||+|+|
T Consensus 49 ------------~~~~aaid~Al~~-------~P-----g~~r~~v~~~~ti~~~~~e~~~~~~~---~~G~~~~KiKvg 101 (327)
T 2opj_A 49 ------------RWWAACYEAAELG-------WP-----APVRDTVPVNATVPAVGPEEAARIVA---SSGCTTAKVKVA 101 (327)
T ss_dssp ------------HHHHHHHHHHHTC-------CC-----CCSCSEEEBCEEECSCCHHHHHHHHH---HHCCSEEEEECC
T ss_pred ------------HHHHHHHHHHHhC-------CC-----cCCCCeeEEeEEeCCCCHHHHHHHHH---HCCCCEEEEEeC
Confidence 2358999999974 46 55678999999999989988755543 589999999999
Q ss_pred C---CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccC
Q 013681 229 R---NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG 304 (438)
Q Consensus 229 ~---d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~ 304 (438)
. ++++|++++++||+ .+|++.|+||||++|++++|++++++|+++++ .|||||++ +++++++|++ +++
T Consensus 102 ~~g~~~~~d~~~v~avR~~~G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEqP~~--~~~~~~~l~~----~~~ 173 (327)
T 2opj_A 102 ERGQSEANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRFEL--EYVEQPCA--TVDELAEVRR----RVS 173 (327)
T ss_dssp C------CHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCE--EEEECCSS--SHHHHHHHHH----HCS
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhcCC--cEEeCCCC--CHHHHHHHHh----hCC
Confidence 5 58899999999999 57999999999999999999999999999987 59999997 4899999986 689
Q ss_pred CeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcc
Q 013681 305 ISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIK 383 (438)
Q Consensus 305 iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~ 383 (438)
+||++||++.+..++.++++.+++|++|+|++++| ++++++++ +.+|+++++|+++||+||++|++|+++++++..
T Consensus 174 iPIa~dEs~~~~~~~~~~i~~~a~d~i~ik~~~~GGit~~~~ia---~~~gi~~~~~~~~es~ig~aa~~hlaaa~~~~~ 250 (327)
T 2opj_A 174 VPIAADESIRRAEDPLRVRDAEAADVVVLKVQPLGGVRAALRLA---EECGLPVVVSSAVETSVGLAAGVALAAALPELP 250 (327)
T ss_dssp SCEEC-----------CTTTTTCCSBEEECHHHHTSHHHHHHHH---HHTCSCEEEBCCSCCHHHHHHHHHHHHHSSCCS
T ss_pred CCEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHH---HHcCCcEEEcCCCcCHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999997 99999875 456999999999999999999999999999865
Q ss_pred e-eecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcccc
Q 013681 384 Y-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 384 ~-~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~~~ 432 (438)
+ .+++...++.+|++.+++.++||++.+| |+++|++++++|+++
T Consensus 251 ~~~~l~~~~~~~~d~~~~~~~~~~G~l~vp-----gve~d~~~l~~~~~~ 295 (327)
T 2opj_A 251 YACGLATLRLLHADVCDDPLLPVHGVLPVR-----RVDVSEQRLAEVEID 295 (327)
T ss_dssp SCBBCCGGGGBSCCSBSSCCCCBTTEEECC-----CCCBCHHHHHHTEEC
T ss_pred cccccCchhhhhhhcccCCCeeECCEEECC-----CcccCHHHHHhccCC
Confidence 4 3554323456777777888899999998 799999999999874
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-48 Score=398.79 Aligned_cols=298 Identities=22% Similarity=0.273 Sum_probs=249.1
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCch------------------HHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGD------------------QTKAL 126 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~------------------~~~~~ 126 (438)
|+|++|+.+.+- .+. .++.++|+|+|++|++| ||+.|.+..+++ .....
T Consensus 1 ~~I~~v~~~~v~--------~sr----g~~~v~V~v~td~G~~G-ge~~p~~~~~G~~ea~e~rd~~~~~y~g~~~~~~~ 67 (431)
T 2fym_A 1 SKIVKIIGREII--------DSR----GNPTVEAEVHLEGGFVG-MAAAPSGASTGSREALELRDGDKSRFLGKGVTKAV 67 (431)
T ss_dssp CBEEEEEEEEEE--------CTT----SCEEEEEEEEETTSCEE-EEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred CeeEEEEEEEEE--------cCC----CCeeEEEEEEECCCCcc-ceecCcccccCcccceeccCCcccccccccHHHHH
Confidence 689999988753 111 23579999999999999 999876532221 22334
Q ss_pred HHHHH-HhhHhcCCCCCCHHHHHHHHHHHCC----CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCc----eee
Q 013681 127 VKVRE-ACQFLRQSPPTTLNFALDEIARILP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNS----LST 196 (438)
Q Consensus 127 ~~~~~-i~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~----ip~ 196 (438)
..+++ +.|.|+|+++.+++.+|+.|.+... +...+++++||||||||++||..|+|||+||||. +++ +|+
T Consensus 68 ~~i~~~l~p~LiG~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~~~~~~~~~pv 147 (431)
T 2fym_A 68 AAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPV 147 (431)
T ss_dssp HHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTCCCCCE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhcCcccccccccccc
Confidence 44554 8899999999999999999977311 1223479999999999999999999999999996 444 777
Q ss_pred ee------------eeCCCC----H--HHHHHHHHHHhhcCCcEEE---------EecCC------CchHHHHHHHHHHh
Q 013681 197 AI------------TIPAVS----P--AEASELASKYCKLGFSTLK---------LNVGR------NITADFDVLQAIHA 243 (438)
Q Consensus 197 ~~------------~i~~~~----~--~~~~~~~~~~~~~Gf~~iK---------lKvG~------d~~~di~~l~aiR~ 243 (438)
+. ++++.+ | +++.+++.++.++||+++| +|+|. ++++|+++|++||+
T Consensus 148 ~~~~~~~gg~~~~~~l~~~~~mi~p~~~~~~~~a~~~~~~g~~~lK~~l~~~g~~~kvG~~gg~~~~~~~d~~~l~~vre 227 (431)
T 2fym_A 148 PMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAE 227 (431)
T ss_dssp ECEEEEECGGGSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHH
T ss_pred eeEeeccCccccccccCcchhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCcccccCcccCCCCCccchHHHHHHHHH
Confidence 54 222333 5 6677788888899999999 99985 67889999999998
Q ss_pred -h-------CCCcEEEEeC----------------C-CCCCHHHHHHHHHHhhh-CCCCCceEecCCCCCChhhHHHHHH
Q 013681 244 -V-------HPHCSFILDA----------------N-EGYTSEEAVEVLGKLND-MGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 244 -~-------~~~~~L~vDA----------------N-~~~s~~~A~~~l~~L~~-~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
+ ++++.|+||+ | ++|++++|++++++|.+ |++ .|||||++++|++++++|++
T Consensus 228 ai~~~g~~~G~dv~l~vDaaas~~~~~~~Y~~~~~n~~~~t~~~ai~~~~~L~~~~~i--~~iEePl~~~d~~~~~~l~~ 305 (431)
T 2fym_A 228 AVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPI--VSIEDGLDESDWDGFAYQTK 305 (431)
T ss_dssp HHHHTTCCBTTTBEEEEECCGGGGEETTEEEEGGGTTEEECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHH
T ss_pred HHHHhccCCCCccEEEEeechhhccccCceeeccCCCCCCCHHHHHHHHHHHHHhCCc--eEEECCCCcccHHHHHHHHH
Confidence 5 6899999999 9 99999999999999998 986 69999999999999999986
Q ss_pred hhcccc--CCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHH
Q 013681 298 FARDTY--GISVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFA 372 (438)
Q Consensus 298 ~~r~~~--~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~ 372 (438)
++ ++||++|| ++.++.+++++++.+++|++|+|++++| ++++++++++|+++|++++++++. ||+++.+|.
T Consensus 306 ----~~~~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~~GGite~~~i~~~A~~~g~~~~~~h~~get~~~~~a~ 381 (431)
T 2fym_A 306 ----VLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIAD 381 (431)
T ss_dssp ----HHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHH
T ss_pred ----HhCCCCeEEeCCcccCCHHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHHHHHH
Confidence 46 89999999 9999999999999999999999999998 999999999999999999999888 999997777
Q ss_pred HHHHhhcCC
Q 013681 373 LHLAAGLGC 381 (438)
Q Consensus 373 ~hla~al~~ 381 (438)
+|++++.++
T Consensus 382 la~a~~~~~ 390 (431)
T 2fym_A 382 LAVGTAAGQ 390 (431)
T ss_dssp HHHHTTCEE
T ss_pred HHHhcCCCc
Confidence 777765443
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=395.79 Aligned_cols=300 Identities=19% Similarity=0.239 Sum_probs=248.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCC----------------CCch-HHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL----------------VTGD-QTKALV 127 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~----------------~s~~-~~~~~~ 127 (438)
|+|++|+++.+..|. + ++.++|+|+|++|++|||++. .+. |.++ ......
T Consensus 9 MkI~~i~~~~v~~s~--------g----~~~v~V~v~td~G~~G~G~~~-~~~~tg~~ea~~~~d~~~~~~g~~~~~~~~ 75 (427)
T 2pa6_A 9 FEIKDIVAREVIDSR--------G----NPTVEVEVITKGNGYGSAIVP-SGASTGTHEALELRDKEKRFGGKGVLMAVE 75 (427)
T ss_dssp GBEEEEEEEEEECTT--------S----CEEEEEEEEETTCCEEEEECC-CCCSSCSSSCCCCCCCSSGGGGTCCHHHHH
T ss_pred CEEEEEEEEEEEcCC--------C----CceEEEEEEECCCCeeeEecc-cccccCcceeEeecCCccccccccHHHHHH
Confidence 899999999887442 1 567999999999999999653 221 2221 222334
Q ss_pred HHHH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeee--
Q 013681 128 KVRE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT-- 199 (438)
Q Consensus 128 ~~~~-i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~-- 199 (438)
.+++ +.|.|+|+++.+++.+|+.|.+.. .+....++++|||+||||++||..|+|||+||||. ++++|+|..
T Consensus 76 ~i~~~l~p~LiG~d~~~~~~i~~~l~~~~~~~~~~~~~~~A~~avd~AlwDl~ak~~g~Pl~~lLGg~~~~~vp~~~~~~ 155 (427)
T 2pa6_A 76 NVNSIIRPEILGYDARMQREIDTIMIELDGTPNKSRLGANAILAVSLAVAKAAAATAKIPLYKYLGGFNSYVMPVPMMNV 155 (427)
T ss_dssp HHHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHCSCCCEECEECEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHHHHHHhCCcHHHHhcCccccccccchhcc
Confidence 4554 889999999999999999997631 12223579999999999999999999999999997 677888642
Q ss_pred e----------CC------CCHHHHHHHHHHHhhcCCcEEEE----ecCC-------------CchHHHHHHHHHHh-h-
Q 013681 200 I----------PA------VSPAEASELASKYCKLGFSTLKL----NVGR-------------NITADFDVLQAIHA-V- 244 (438)
Q Consensus 200 i----------~~------~~~~~~~~~~~~~~~~Gf~~iKl----KvG~-------------d~~~di~~l~aiR~-~- 244 (438)
+ ++ .+++++.+++.++.++||+++|+ |+|. ++++|+++|++||+ +
T Consensus 156 ~~gg~~~~~~l~~~~~~~~p~~~~~~~~a~~~~~~g~~~lK~~l~~K~G~~~~~vg~~gg~~~~~~~d~~~v~~vreav~ 235 (427)
T 2pa6_A 156 INGGKHAGNDLDLQEFMIMPVGATSISEAVRMGSEVYHVLKNVILEKYGKNAVNVGDEGGFAPPLKTSREALDLLTESVK 235 (427)
T ss_dssp EECSTTTSSSCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSCCBCTTSCBCCSCCSHHHHHHHHHHHHH
T ss_pred ccccccccCCcCHHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCcCCcCCCccchHHHHHHHHHHHH
Confidence 1 11 12266778888888999999998 7442 36889999999998 5
Q ss_pred --CC--CcEEEEeC-------CCCC-------CHHHHHHHHH-HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCC
Q 013681 245 --HP--HCSFILDA-------NEGY-------TSEEAVEVLG-KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305 (438)
Q Consensus 245 --~~--~~~L~vDA-------N~~~-------s~~~A~~~l~-~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~i 305 (438)
++ ++.|+||+ |++| ++++|++++. .|++|++ .|||||++++|++++++|++ ++++
T Consensus 236 ~~G~~~~~~L~vDa~as~~~~n~~~~~~n~~~~~~~ai~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~i 309 (427)
T 2pa6_A 236 KAGYEDEVVFALDAAASEFYKDGYYYVEGKKLTREELLDYYKALVDEYPI--VSIEDPFHEEDFEGFAMITK----ELDI 309 (427)
T ss_dssp HHTCTTTCEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----HSSS
T ss_pred HhCCCCCcEEEEEcchhccccCCceeecCCCCCHHHHHHHHHHHHhhCCC--cEEEcCCChhhHHHHHHHHh----hCCC
Confidence 77 89999999 6775 8899999975 8999986 59999999999999999986 5899
Q ss_pred eEEEcCC-CCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 306 SVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 306 PIa~dEs-l~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
||++||+ +.+..+++++++.+++|++|+|++++| ++++++++++|+++|++++++++. ||+++.+|.+|++++.++.
T Consensus 310 pIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~~~~~h~~~es~i~~aa~l~~a~~~~~~ 389 (427)
T 2pa6_A 310 QIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEAVDAAQLAFRNGYGVVVSHRSGETEDTTIADLSVALNSGQI 389 (427)
T ss_dssp EEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHTTTCEEEEECCSSCCSCCHHHHHHHHTTCSEE
T ss_pred eEEeCccccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHHhCCCcc
Confidence 9999999 555999999999999999999999997 999999999999999999996655 9999999999999988765
Q ss_pred c
Q 013681 383 K 383 (438)
Q Consensus 383 ~ 383 (438)
.
T Consensus 390 ~ 390 (427)
T 2pa6_A 390 K 390 (427)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=380.99 Aligned_cols=298 Identities=21% Similarity=0.267 Sum_probs=243.5
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCC-----------------ch-HHHHHH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVT-----------------GD-QTKALV 127 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s-----------------~~-~~~~~~ 127 (438)
.|.+|..+.+ .+|.+ ++.++|+|+|++|++| ||+.+.+..+ +. ......
T Consensus 13 ~i~~~~~r~i--------~dsrg----~~~v~V~V~td~G~~G-ge~~p~~~~tG~~ea~elrd~~~~~~~g~~v~~a~~ 79 (444)
T 1w6t_A 13 IITDVYAREV--------LDSRG----NPTLEVEVYTESGAFG-RGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVD 79 (444)
T ss_dssp BEEEEEEEEE--------ECTTS----CEEEEEEEEETTCCEE-EEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHH
T ss_pred hcceeEEEEE--------EcCCC----CceEEEEEEECCCCEe-eEecccccccccceeeeeccCcccccccccHHHHHH
Confidence 4777776542 34444 3789999999999999 9998754221 11 122334
Q ss_pred HHHH-HhhHhcCCCCCCHHHHHHHHHHHCC----CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeee--
Q 013681 128 KVRE-ACQFLRQSPPTTLNFALDEIARILP----GSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT-- 199 (438)
Q Consensus 128 ~~~~-i~~~l~g~~~~~~~~~~~~l~~~~~----g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~-- 199 (438)
.+++ +.|.|+|+++.+++.+|+.|.+... +...+++++||||||||++||..|+|||+||||. ++++|+|.+
T Consensus 80 ~i~~~l~p~LiG~d~~~~~~i~~~l~~~~g~~~~~~~g~~A~~avd~AlwD~~ak~~g~Pl~~lLGG~~~~~vp~~~~~~ 159 (444)
T 1w6t_A 80 NVNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGGFNTKVLPTPMMNI 159 (444)
T ss_dssp HHHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHCTTCCEECEECEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCccccchhHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCcccccccccce
Confidence 4554 8899999999999999999876311 1223579999999999999999999999999996 788998763
Q ss_pred e-C---------C------CCHHHHHHHHHHHhhcCCcEEE---------EecCC------CchHHHHHHHHHHh-h---
Q 013681 200 I-P---------A------VSPAEASELASKYCKLGFSTLK---------LNVGR------NITADFDVLQAIHA-V--- 244 (438)
Q Consensus 200 i-~---------~------~~~~~~~~~~~~~~~~Gf~~iK---------lKvG~------d~~~di~~l~aiR~-~--- 244 (438)
+ + . ...+++.+++.++.++||+++| +|+|. ++++|+++|++||+ +
T Consensus 160 ~~gg~~a~~~l~~qe~mi~p~~~~~~~~a~~~~~~g~~~lK~~lk~kg~~~kvG~~gg~~~~~~~d~~~l~avreav~~a 239 (444)
T 1w6t_A 160 INGGSHSDAPIAFQEFMILPVGAPTFKEALRYGAEIFHALKKILKSRGLETAVGDEGGFAPRFEGTEDGVETILAAIEAA 239 (444)
T ss_dssp EECGGGCSSSCCCSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHHHHHHT
T ss_pred eccccccccccchhHhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCCCCchHhHHHHHHHHHHHHHHh
Confidence 1 1 0 0113455667777889999999 88985 67889999999998 4
Q ss_pred ----CCCcEEEEeC---------CCC-------------CCHHHHHHHHHHhh-hCCCCCceEecCCCCCChhhHHHHHH
Q 013681 245 ----HPHCSFILDA---------NEG-------------YTSEEAVEVLGKLN-DMGVIPVLFEQPVHRDDWSGLHDVSN 297 (438)
Q Consensus 245 ----~~~~~L~vDA---------N~~-------------~s~~~A~~~l~~L~-~~~l~~~~iEqPl~~~d~~~~a~L~~ 297 (438)
|+++.|+||+ |++ ||+++|++++++|. +|++ .|||||++++|++++++|++
T Consensus 240 gy~pG~dv~L~vDaaas~~~~~~n~~y~~~~n~~~~~~~~t~~eai~~~~~l~~~~~i--~~iEePl~~~d~~~~~~l~~ 317 (444)
T 1w6t_A 240 GYVPGKDVFLGFDCASSEFYDKERKVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYPI--ITIEDGMDENDWDGWKALTE 317 (444)
T ss_dssp TCCBTTTBEEEEECCGGGGBC--CCCEETHHHHCTTCCEECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHH
T ss_pred ccCCCCCcEEEEEccchhcccccCCceeeccccCcccCCCCHHHHHHHHHHHHHhCCc--EEEECCCChhhHHHHHHHHH
Confidence 7799999999 888 88999999999986 4986 69999999999999999986
Q ss_pred hhcccc--CCeEEEcCC-CCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHH
Q 013681 298 FARDTY--GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFA 372 (438)
Q Consensus 298 ~~r~~~--~iPIa~dEs-l~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~ 372 (438)
++ ++||++||+ +.++.+++++++.+++|++|+|++++| ++++++++++|+++|++++++++. ||+++.+|.
T Consensus 318 ----~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~ia~lA~~~g~~v~~~h~~get~i~~~a~ 393 (444)
T 1w6t_A 318 ----RLGKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVNQIGTLTETFEAIEMAKEAGYTAVVSHRSGETEDSTIAD 393 (444)
T ss_dssp ----HHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCHHHH
T ss_pred ----hhCCCCeEEeCCcccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHCCCeEEecCCCCCchHHHHHH
Confidence 46 899999998 999999999999999999999999998 999999999999999999996666 999998888
Q ss_pred HHHHhhcCCc
Q 013681 373 LHLAAGLGCI 382 (438)
Q Consensus 373 ~hla~al~~~ 382 (438)
+|++++.++.
T Consensus 394 lava~~~~~i 403 (444)
T 1w6t_A 394 IAVATNAGQI 403 (444)
T ss_dssp HHHHTTCCEE
T ss_pred HHHhcCCCcc
Confidence 8887765543
|
| >2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=365.69 Aligned_cols=297 Identities=20% Similarity=0.247 Sum_probs=236.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC----------------CCCc-hHHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKALV 127 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~~ 127 (438)
|+|++|+.+.+..|..+ +.++|+|+|++| +||||+.+.. .|.+ .......
T Consensus 4 m~I~~i~~~~v~~~~~~------------p~v~V~v~td~G-~G~ge~~sgastg~~ea~elrd~~~~~~~g~~v~~av~ 70 (432)
T 2ptz_A 4 MTIQKVHGREVLDSRGN------------PTVEVEVTTEKG-VFRSAVPSGASTGVYEACELRDGDKKRYVGKGCLQAVK 70 (432)
T ss_dssp TSCCEEEEEEEECTTSC------------EEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHHHH
T ss_pred CEEEEEEEEEEecCCCC------------cEEEEEEEeCCc-EEEEEEecccccCcceeeeeccCcccccccccHHHHHH
Confidence 78999999998877543 468999999999 9999986421 1222 1223344
Q ss_pred HHHH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC---CC-CC--ceee
Q 013681 128 KVRE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFG---GA-SN--SLST 196 (438)
Q Consensus 128 ~~~~-i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg---g~-~~--~ip~ 196 (438)
.+++ +.|.|+|+++.+++.+|+.|.+.. .+....++++|||+||||++||..|+|||+||| |. +. ++|+
T Consensus 71 ~v~~~iap~LiG~d~~~~~~i~~~m~~~~~~~~~~~~~~~Ai~aVd~AlwD~~ak~~g~Ply~lLG~~~G~~~~~~pvp~ 150 (432)
T 2ptz_A 71 NVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLASLAGTKELRLPVPC 150 (432)
T ss_dssp HHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTCSCCEECEEE
T ss_pred HHHHHHHHHHCCCChhhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhccccCCCCcCCceeE
Confidence 4554 889999999999999999987641 122336799999999999999999999999999 86 33 4555
Q ss_pred eeeeC--C-----CCHHHH---------HHHHHHHhhcCCcEEEEec----CC----------------CchHHHHH-HH
Q 013681 197 AITIP--A-----VSPAEA---------SELASKYCKLGFSTLKLNV----GR----------------NITADFDV-LQ 239 (438)
Q Consensus 197 ~~~i~--~-----~~~~~~---------~~~~~~~~~~Gf~~iKlKv----G~----------------d~~~di~~-l~ 239 (438)
|..+. . .+++++ .+++.++.++||+++|+|+ |. +.++|+++ ++
T Consensus 151 ~~~i~gg~~a~~~~~~qe~mi~p~~~~~~~ea~~~~~eg~~~lK~~l~~k~G~~at~vgdegg~~p~~~~~~~~l~~i~~ 230 (432)
T 2ptz_A 151 FNVINGGKHAGNALPFQEFMIAPVKATSFSEALRMGSEVYHSLRGIIKKKYGQDAVNVGDEGGFAPPIKDINEPLPILME 230 (432)
T ss_dssp EEEEECSTTSSSSCCSCEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGCCBCTTSSBCCSCCCTTTHHHHHHH
T ss_pred EEEecCcccccCCCCHHHhcccCcccCCHHHHHHHHHHHHHHHHHHhHhhcCCCccccCCccCcCCCcccHHHHHHHHHH
Confidence 54431 1 123333 6678888899999999865 52 25789996 89
Q ss_pred HHHhhCC--CcEEEEeCCCCC---------------------CHHHHHHHH-HHhhhCCCCCceEecCCCCCChhhHHHH
Q 013681 240 AIHAVHP--HCSFILDANEGY---------------------TSEEAVEVL-GKLNDMGVIPVLFEQPVHRDDWSGLHDV 295 (438)
Q Consensus 240 aiR~~~~--~~~L~vDAN~~~---------------------s~~~A~~~l-~~L~~~~l~~~~iEqPl~~~d~~~~a~L 295 (438)
+||++++ ++.|++|+|++| +.+++++++ +.+++|++ .|||||++++||+++++|
T Consensus 231 Air~~G~~g~v~l~vDan~~~~~~~~~~~y~~~~~~~~~~~~~a~~~~~~~~~~l~~y~i--~~iEdPl~~~D~~g~~~l 308 (432)
T 2ptz_A 231 AIEEAGHRGKFAICMDCAASETYDEKKQQYNLTFKSPEPTWVTAEQLRETYCKWAHDYPI--VSIEDPYDQDDFAGFAGI 308 (432)
T ss_dssp HHHHTTCTTSCEEEEECCGGGGEETTTTEEETTTTSSSCCEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHH
T ss_pred HHHHhCCcCCcEEEEECcccccccccCceeEeeccccccCCCCHHHHHHHHHHHHHhCCc--eEEECCCCcchHHHHHHH
Confidence 9998888 899999999885 455666555 67889986 699999999999999999
Q ss_pred HHhhcccc--CCeEEEcCC-CCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHHHH
Q 013681 296 SNFARDTY--GISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATG 370 (438)
Q Consensus 296 ~~~~r~~~--~iPIa~dEs-l~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~ 370 (438)
++ ++ ++||++||. ++++.+++++++.+++|++|+|++++| ++++++++++|+++|++++++++ .|+.++..
T Consensus 309 ~~----~~g~~ipI~gDe~~v~~~~~~~~~i~~~a~d~i~ik~~~~GGitea~~i~~lA~~~g~~v~~~h~~get~~~~~ 384 (432)
T 2ptz_A 309 TE----ALKGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTISEAIASSKLCMENGWSVMVSHRSGETEDTYI 384 (432)
T ss_dssp HH----HTTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHH
T ss_pred HH----hcCCCCeEEecCcccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEecCCCCccHHHHH
Confidence 86 46 899999995 789999999999999999999999998 99999999999999999998665 48888777
Q ss_pred HHHHHHhhcC
Q 013681 371 FALHLAAGLG 380 (438)
Q Consensus 371 a~~hla~al~ 380 (438)
|.+|++.+.+
T Consensus 385 a~lava~~~~ 394 (432)
T 2ptz_A 385 ADLVVALGSG 394 (432)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHhCCC
Confidence 7777766554
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-42 Score=350.80 Aligned_cols=301 Identities=23% Similarity=0.295 Sum_probs=232.2
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC----------------CCCch-HHHHH
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP----------------LVTGD-QTKAL 126 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~s~~-~~~~~ 126 (438)
.|+|++|..+.+- .|. ..+.|.|+|+|++|.+|+|+++... .|.+. ...++
T Consensus 25 ~m~I~~i~~r~i~--------dsr----g~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~g~~v~~av 92 (449)
T 3uj2_A 25 YLEIEKVIGREII--------DSR----GNPTVEAEVYLAGGVTGRGTAPSGASTGEFEALELRDGDKGRFGGKGVTKAV 92 (449)
T ss_dssp TTBEEEEEEEEEE--------CTT----SCEEEEEEEEETTSCEEEEECCBC---CCSSCCCCCCCCTTSGGGTCCHHHH
T ss_pred ceEEEEEEEEEEE--------CCC----CCCeEEEEEEECCCCEEEEeccCCCcCcceeEEEeccCCcccccchhHHHHH
Confidence 3899999876531 222 2378999999999999999875321 13231 22344
Q ss_pred HHHH-HHhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCC-Cceee--ee
Q 013681 127 VKVR-EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS-NSLST--AI 198 (438)
Q Consensus 127 ~~~~-~i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~-~~ip~--~~ 198 (438)
..++ .+.|.|+|+++.+++.+|+.|.+.- .+....++++|||+||||+.||..|+|||+||||.. +++|+ |.
T Consensus 93 ~~v~~~iap~LiG~d~~~~e~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~~~lpvp~~n 172 (449)
T 3uj2_A 93 QNINTEISEILSGMDASDIYAVDRAMIDADGTKDKSKFGANAVLAVSIACAKAAAAALGVPLYRFLGGLNANRLPVPMMN 172 (449)
T ss_dssp HHHHTHHHHHHTTSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHGGGCCBCCEECEE
T ss_pred HHHHHHHHHHHccCCccCHHHHHHHHHHhcCcCCcchhhHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCCCCceeeeeEE
Confidence 4444 3789999999999999999998742 122335799999999999999999999999999974 56666 43
Q ss_pred ee--CCC-----CHHH---------HHHHHHHHhhcCCcEEEE--e-------cCC---------CchHHHHHH-HHHHh
Q 013681 199 TI--PAV-----SPAE---------ASELASKYCKLGFSTLKL--N-------VGR---------NITADFDVL-QAIHA 243 (438)
Q Consensus 199 ~i--~~~-----~~~~---------~~~~~~~~~~~Gf~~iKl--K-------vG~---------d~~~di~~l-~aiR~ 243 (438)
.+ +.. ++++ ..+++.++.++||+++|+ | +|. +.+++++++ ++||+
T Consensus 173 ~inGG~ha~~~~~~qEfmi~P~ga~~~~ea~~~~~egy~~lK~~lk~~g~~t~vGdeggfap~~~~~~e~l~~i~~AIr~ 252 (449)
T 3uj2_A 173 ILNGGAHAANTVDVQEFMIMPVGAESFREALRQCTEVFHALAGLLKSKGLATSVGDEGGFAPDLASDEEAIEYILEAVKL 252 (449)
T ss_dssp EEECSTTSSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSCHHHHHHHHHHHHHH
T ss_pred EecCcccCCCccchhhhhhCCcccccHHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCcCCCccCHHHHHHHHHHHHHH
Confidence 33 211 2221 345667778999999998 4 552 236677777 78888
Q ss_pred h----CCCcEEEEeCCC------------------CCCHHHHHHHHHH-hhhCCCCCceEecCCCCCChhhHHHHHHhhc
Q 013681 244 V----HPHCSFILDANE------------------GYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFAR 300 (438)
Q Consensus 244 ~----~~~~~L~vDAN~------------------~~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r 300 (438)
+ |+++.|++|+|+ .|++++|++++++ |++|++ .|||||++++||+++++|++.+
T Consensus 253 agy~~G~dv~l~vD~aase~~~~~~g~Y~l~~~~~~~t~~eai~~~~~lle~y~i--~~IEdPl~~dD~eg~~~L~~~~- 329 (449)
T 3uj2_A 253 AGYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKRKFASEELVAHWKSLCERYPI--VSIEDGLDEEDWEGWQYMTREL- 329 (449)
T ss_dssp TTCCBTTTBEEEEECCGGGCBCSSTTEEECTTTCCEEEHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHH-
T ss_pred hccccCCceEEEEEcchhhhccccCceeeccCcccccCHHHHHHHHHHHHHhcCc--eEEECCCCcchHHHHHHHHHHh-
Confidence 6 568999999984 3689999999987 899986 5999999999999999998731
Q ss_pred cccCCeEEEcCCCC-CHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHHHHHHHHHHh
Q 013681 301 DTYGISVVADESCR-SLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATGFALHLAA 377 (438)
Q Consensus 301 ~~~~iPIa~dEsl~-~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~a~~hla~ 377 (438)
..++||++||++. ++.+++++++.+++|++|+|++++| ++++++++++|+++|+++|+++. .|+..+. +++|+.
T Consensus 330 -~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~~iGGiTea~kia~lA~~~Gi~~~v~H~sgET~d~~--iadLaV 406 (449)
T 3uj2_A 330 -GDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTVSETLEAIKMAHKAGYTAVVSHRSGETEDTT--IADLAV 406 (449)
T ss_dssp -TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSBCCSCCH--HHHHHH
T ss_pred -CCCceEECCcceeCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHH--HHHHHH
Confidence 1289999999986 5999999999999999999999998 99999999999999999766554 4776654 456666
Q ss_pred hcCCc
Q 013681 378 GLGCI 382 (438)
Q Consensus 378 al~~~ 382 (438)
++++.
T Consensus 407 a~~~~ 411 (449)
T 3uj2_A 407 ALNTG 411 (449)
T ss_dssp HTTCC
T ss_pred HhCCC
Confidence 66543
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=343.17 Aligned_cols=297 Identities=21% Similarity=0.244 Sum_probs=233.3
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC---------------CCCCc-hHHHHHHHH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV---------------PLVTG-DQTKALVKV 129 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~---------------~~~s~-~~~~~~~~~ 129 (438)
+|++|..+.+ .+|. ..++|.|+|+|++|.+|++.++.. +.|.+ ....+...+
T Consensus 6 ~i~~i~~r~i--------~dsr----G~ptvev~v~t~~g~~g~a~vpsgastg~~ea~elrd~~~~y~gkgv~~av~~v 73 (417)
T 3qn3_A 6 VIEDVRAYEV--------LDSR----GNPTVKAEVTLSDGSVGAAIVPSGASTGSKEALELRDNDERFGGKGVLKAVANV 73 (417)
T ss_dssp BEEEEEEEEE--------ECTT----SCEEEEEEEEETTCCEEEEECCCCBSSCSSSCBCCCCCSTGGGGTCCHHHHHHH
T ss_pred eeeEEEEEEE--------EcCC----CCceEEEEEEECCCCEEEEecCCCCccccceeeeecCCCccccCccHHHHHHHH
Confidence 5888876543 2333 367899999999999999865321 01222 122344445
Q ss_pred HH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC-CCceeeeee--e-
Q 013681 130 RE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGA-SNSLSTAIT--I- 200 (438)
Q Consensus 130 ~~-i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~-~~~ip~~~~--i- 200 (438)
++ +.|.|+|+++.+++.+|+.|.+.. .+....+|++|||+||||+.||..|+|||+||||. ++++|+|.. +
T Consensus 74 ~~~iap~LiG~d~~~~~~id~~m~~~dgt~~k~~lg~nAi~aVs~Al~da~ak~~g~PLy~lLGG~~~~~lPv~~~nvin 153 (417)
T 3qn3_A 74 NETIADEILGLDAFNQTQLDDTLRELDGTNNYSNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIIN 153 (417)
T ss_dssp HTHHHHHHTTSBTTCHHHHHHHHHHHHCSSSCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHGGGCCEECEEEEEEEE
T ss_pred HHHHHHHHCCCCccCHHHHHHHHHHhhccCCCCchhhhhHHHHHHHHHHHHHHHhCCcHHHHhCCCCCcceeeeeeeeec
Confidence 44 889999999999999999998742 12234679999999999999999999999999997 678998842 1
Q ss_pred -CC-----CCHHHH------HHHHHHHhhcC---CcEEEE---------ecCC---------CchHHHHHH-HHHHhhC-
Q 013681 201 -PA-----VSPAEA------SELASKYCKLG---FSTLKL---------NVGR---------NITADFDVL-QAIHAVH- 245 (438)
Q Consensus 201 -~~-----~~~~~~------~~~~~~~~~~G---f~~iKl---------KvG~---------d~~~di~~l-~aiR~~~- 245 (438)
+. .++++. .+.+++.++.| |+++|+ |+|. +.++|+++| ++||++|
T Consensus 154 GG~ha~~~~~~qe~mi~P~ga~~~~ea~~~G~evy~~lK~~l~~kg~~t~vGdegg~ap~~~~~~e~l~~i~~Air~aGy 233 (417)
T 3qn3_A 154 GGAHANNNVDFQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPIDLLMTCIKKAGY 233 (417)
T ss_dssp CGGGSSSSCCCSEEEEEECSCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSSSHHHHHHHHHHHHTTC
T ss_pred CcccCCCcccHHHHhcCccchHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCCCCcCCCcCCHHHHHHHHHHHHHHcCC
Confidence 11 122221 22334445666 999988 6763 357899998 9999987
Q ss_pred -CCcEEEEeCCCC--------------CCHHHHHHHHHH-hhhCCCCCceEecCCCCCChhhHHHHHHhhcccc--CCeE
Q 013681 246 -PHCSFILDANEG--------------YTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTY--GISV 307 (438)
Q Consensus 246 -~~~~L~vDAN~~--------------~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~--~iPI 307 (438)
|++.|++|+|++ |++++|++++++ +++|++ .|||||++++||+++++|++ ++ ++||
T Consensus 234 ~~dv~l~vD~~ase~~~~g~y~l~~~~~t~~eai~~~~~ll~~y~i--~~IEdPl~~dD~e~~~~L~~----~~g~~ipI 307 (417)
T 3qn3_A 234 ENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI--CSIEDGLAENDFEGWIKLTE----KLGNKIQL 307 (417)
T ss_dssp TTTEEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCE--EEEESSSCTTCHHHHHHHHH----HHTTTSEE
T ss_pred CCCceEEEECCchhhccCCeeecCCCccCHHHHHHHHHHHHhhcce--eEEecCCCcccHHHHHHHHH----hhCCCCce
Confidence 899999999986 579999999998 899986 69999999999999999987 45 6999
Q ss_pred EEcCCCCC-HHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 308 VADESCRS-LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 308 a~dEsl~~-~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
++||++.+ +.+++++++.+++|++++|++++| ++++++++++|+++|+++|++++. |+..+. ++||+.++++.
T Consensus 308 ~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~qiGGiTea~kia~lA~~~G~~v~vsh~sgEt~d~~--iadlava~~~~ 383 (417)
T 3qn3_A 308 VGDDLFVTNEDILREGIIKKMANAVLIKPNQIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAF--IADFAVALNTG 383 (417)
T ss_dssp EESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHHHHHHHHHHHTTCEEEEECCSSCCSCCH--HHHHHHHTTCS
T ss_pred ecCCcccCCHHHHHHHHHhCCCCEEEecCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHH--HHHHHHHhCCC
Confidence 99999987 999999999999999999999998 999999999999999999998764 776554 55666666553
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=337.79 Aligned_cols=298 Identities=22% Similarity=0.269 Sum_probs=228.7
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC----------------CCCc-hHHHHHHH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP----------------LVTG-DQTKALVK 128 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~s~-~~~~~~~~ 128 (438)
+|++|..+.+ .+|. ..+.|.|+|+|++|.+|+|.+.... .|.+ ....+...
T Consensus 4 ~i~~~~~r~i--------~dsr----g~ptvev~v~t~~G~~G~~~~psgastG~~ea~elrd~~~~~y~gkgv~~av~~ 71 (428)
T 3tqp_A 4 TITDINAHEI--------LDSR----ANPTLEVRVTLSSQAYGCAAVPSGASTGEREAVELRDNDLERYGGKGVLQAVEN 71 (428)
T ss_dssp CEEEEEEEEE--------ECTT----SCEEEEEEEEETTSCEEEEECCBCC---CCSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred eEEEEEEEEE--------EcCC----CCCEEEEEEEECCCCEEEEeccccccCCcceeEeecCCCccccccccHHHHHHH
Confidence 5777776543 2222 2488999999999999999654210 1222 11234444
Q ss_pred HH-HHhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC-CC---Cceeeeee
Q 013681 129 VR-EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG-AS---NSLSTAIT 199 (438)
Q Consensus 129 ~~-~i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg-~~---~~ip~~~~ 199 (438)
++ .+.|.|+|+++.+++.+|+.|.+.- .+....++++||||||||+.||..|+|||+|||| .+ .++|+|..
T Consensus 72 v~~~iap~LiG~d~~~~~~i~~~m~~~dgt~~k~~lg~nAi~aVd~Alwda~ak~~g~PLy~lLGG~~~~~~~pvp~~~~ 151 (428)
T 3tqp_A 72 VNGPIRDALLGQDPRSQEEIDRIMIELDGTENKANLGANAILGVSLAVAYAAANNADLPLYRYLGGDGGPFSMPVPMMNI 151 (428)
T ss_dssp HHTHHHHHHTTCCTTCHHHHHHHHHHHHCCTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHTTTCCCCBCEEEEEE
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHhcCcCCcCccchhHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCCceeeeEEEEE
Confidence 44 4889999999999999999998742 1223357899999999999999999999999999 53 35666765
Q ss_pred eCCC-------CHHH---------HHHHHHHHhhcCCcEEEEe---------cC------CCchHHHHH----HHHHHhh
Q 013681 200 IPAV-------SPAE---------ASELASKYCKLGFSTLKLN---------VG------RNITADFDV----LQAIHAV 244 (438)
Q Consensus 200 i~~~-------~~~~---------~~~~~~~~~~~Gf~~iKlK---------vG------~d~~~di~~----l~aiR~~ 244 (438)
+..+ +.++ ..+++.++.++||+++|+| +| +++++|.+. +++||++
T Consensus 152 inGG~ha~~~~~~qefmi~P~ga~~~~ea~~~~~egy~~lK~~l~~~g~~t~vGdegg~ap~~~~~~e~l~~i~~Air~a 231 (428)
T 3tqp_A 152 INGGAHATNNLDFQEFMIVPVGAPTFAEALRYGAEVFHALKKRLVSRGLMSAVGDEGGFAPDLPNNEAAFELILEAIEDA 231 (428)
T ss_dssp EECC----CCCSSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHTTCCCCBCTTSCBCCCCSSHHHHHHHHHHHHHHT
T ss_pred ecCcccCCCccchhHHhhcCcchhhHHHHHHHHHHHHHhHhhhhcccccccccCCCCCcCCCcccHHHHHHHHHHHHHHh
Confidence 4221 1222 3456677789999999998 55 234445555 6899986
Q ss_pred ----CCCcEEEEeC--------------CCCCCHHHHHHHHHH-hhhCCCCCceEecCCCCCChhhHHHHHHhhccccCC
Q 013681 245 ----HPHCSFILDA--------------NEGYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGI 305 (438)
Q Consensus 245 ----~~~~~L~vDA--------------N~~~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~i 305 (438)
|+++.|++|+ |++||+++|++++++ +++|++ .|||||++++||+++++|++.+ ..++
T Consensus 232 gy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i--~~IEdPl~~dD~eg~~~L~~~~--~~pI 307 (428)
T 3tqp_A 232 NYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPV--ISIEDGLSENDWAGWKLLTERL--ENKV 307 (428)
T ss_dssp TCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHHHH--TTTS
T ss_pred hcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhccc--ceEeCCCCcccHHHHHHHHHhc--CCCc
Confidence 4799999999 589999999999998 899986 6999999999999999998732 2357
Q ss_pred eEEEcC-CCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHHHHHHHHHHhhcCC
Q 013681 306 SVVADE-SCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATGFALHLAAGLGC 381 (438)
Q Consensus 306 PIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~a~~hla~al~~ 381 (438)
||++|| .+.++.+++++++.+++|++++|++++| ++++++++++|+++|+++|++++ .|+..+.. +|++.++++
T Consensus 308 ~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~iGGiTealkia~lA~~~G~~~~v~H~sGEted~~i--adLaVa~~~ 384 (428)
T 3tqp_A 308 QLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTETLATVGLAKSNKYGVIISHRSGETEDTTI--ADLAVATDA 384 (428)
T ss_dssp EEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHH--HHHHHHTTC
T ss_pred ceeccccccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEEEeCCCCCchHHHH--HHHHHHcCC
Confidence 888888 5779999999999999999999999998 99999999999999999776665 47666554 455555544
|
| >2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=329.77 Aligned_cols=282 Identities=18% Similarity=0.202 Sum_probs=214.7
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCC----------------CCCch-HHHHHHHHHH-HhhHhc--CCCCCCHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVP----------------LVTGD-QTKALVKVRE-ACQFLR--QSPPTTLNFALDEIA 152 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~----------------~~s~~-~~~~~~~~~~-i~~~l~--g~~~~~~~~~~~~l~ 152 (438)
.+.++|+|+|++| +||||+.... .|.+. ....+..+++ +.|.|+ |+++.+++.+|+.|.
T Consensus 16 ~~tv~V~V~t~~G-~G~g~~psgastG~~ea~elrd~~~~~~~g~~v~~av~~v~~~iap~Li~~G~d~~~~~~i~~~m~ 94 (436)
T 2al1_A 16 NPTVEVELTTEKG-VFRSIVPSGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFLI 94 (436)
T ss_dssp CEEEEEEEEETTE-EEEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHHHH
T ss_pred CcEEEEEEEECCc-eEEEeecccccCCcceeeeeccCccccccCccHHHHHHHHHHHHHHHHHHCCCChhhHHHHHHHHH
Confidence 3569999999999 9999975321 12221 2234444555 889999 999999999999987
Q ss_pred HHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC---CCC---Cceeeeee--e--CC---C--C---------
Q 013681 153 RIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFG---GAS---NSLSTAIT--I--PA---V--S--------- 204 (438)
Q Consensus 153 ~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg---g~~---~~ip~~~~--i--~~---~--~--------- 204 (438)
+.- .+...+++++||||||||+.||..|+|||+||| |.. +++|++.. + +. + +
T Consensus 95 ~~dgt~~~~~lg~~Ai~aVd~Al~Da~ak~~g~PLy~lLG~l~G~~~~~~~lpvp~~n~inGg~ha~~~~~~qefmi~p~ 174 (436)
T 2al1_A 95 SLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLADLSKSKTSPYVLPVPFLNVLNGGSHAGGALALQEFMIAPT 174 (436)
T ss_dssp HHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTCCCTTEEECEEEEEEEECGGGSSSSCCSCEEEEECT
T ss_pred HhcCCcccchhHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCcCceeeEEEEEeecCccccCCccccccceecCc
Confidence 631 123346799999999999999999999999999 864 56777431 1 00 0 0
Q ss_pred HHHHHHHHHHHhhcCCcEEEE----e-------cCC------CchHHHHHHHHHHh----hCC--CcEEEEeC-------
Q 013681 205 PAEASELASKYCKLGFSTLKL----N-------VGR------NITADFDVLQAIHA----VHP--HCSFILDA------- 254 (438)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKl----K-------vG~------d~~~di~~l~aiR~----~~~--~~~L~vDA------- 254 (438)
..+..+++.++.++||+++|. | +|. +++.+.+.++.|++ +|+ ++.|++|+
T Consensus 175 ~a~~~~ea~~~~~e~~~~lK~~l~~k~G~~a~~vGdegg~~p~~~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~ 254 (436)
T 2al1_A 175 GAKTFAEALRIGSEVYHNLKSLTKKRYGASAGNVGDEGGVAPNIQTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFK 254 (436)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHCGGGGSBCTTSCBCCCCSCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEE
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCccCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhcc
Confidence 011234445555677887773 3 441 34566666666655 365 79999999
Q ss_pred ---------------CCCCCHHHHHHHHHH-hhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCC-CCHH
Q 013681 255 ---------------NEGYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC-RSLN 317 (438)
Q Consensus 255 ---------------N~~~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl-~~~~ 317 (438)
|+.|++++|++++.+ +++|++ .|||||++++||++|++|++ ++++||++||++ +++.
T Consensus 255 n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i--~~iEdPl~~dD~~g~~~l~~----~~~ipI~gDE~~vt~~~ 328 (436)
T 2al1_A 255 DGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPI--VSIEDPFAEDDWEAWSHFFK----TAGIQIVADDLTVTNPK 328 (436)
T ss_dssp TTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHT----TCCSEEEESTTTTTCHH
T ss_pred CCceEEecccccccccccCCHHHHHHHHHHHHHhCCc--EEEECCCCCcCHHHHHHHHh----cCCCeEEECCcccCCHH
Confidence 445688999977654 688986 59999999999999999986 689999999986 6899
Q ss_pred HHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHHHHHHHHHHhhcCC
Q 013681 318 DVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATGFALHLAAGLGC 381 (438)
Q Consensus 318 d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~a~~hla~al~~ 381 (438)
+++++++.+++|++++|++++| ++++++++++|+++|+.++++++ .|+.++..|.+|++.+.+.
T Consensus 329 ~~~~~i~~~a~d~i~ikv~qiGGitea~~ia~lA~~~g~~~~~sh~sgEt~~~~iA~lava~~~~~ 394 (436)
T 2al1_A 329 RIATAIEKKAADALLLKVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGETEDTFIADLVVGLRTGQ 394 (436)
T ss_dssp HHHHHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHTTCSE
T ss_pred HHHHHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHhcCCc
Confidence 9999999999999999999998 99999999999999999988654 5888877777777766543
|
| >2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=326.07 Aligned_cols=282 Identities=20% Similarity=0.217 Sum_probs=215.1
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCC----------------CCCch-HHHHHHHHHH-HhhHhc--CCCCCCHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVP----------------LVTGD-QTKALVKVRE-ACQFLR--QSPPTTLNFALDEIA 152 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~----------------~~s~~-~~~~~~~~~~-i~~~l~--g~~~~~~~~~~~~l~ 152 (438)
.+.++|+|+|++|+ |||++.... .|.+. ...++..+++ +.|.|+ |+++.+++.+|+.|.
T Consensus 16 ~~tv~V~V~t~~G~-G~~~~psgastG~~Ea~el~d~~~~~~~g~~v~~av~~v~~~iap~Li~~G~d~~~~~~i~~~m~ 94 (439)
T 2akz_A 16 NPTVEVDLYTAKGL-FRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLML 94 (439)
T ss_dssp CEEEEEEEEETTEE-EEEECCBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHCCCTTCHHHHHHHHH
T ss_pred CceEEEEEEECCCc-eEeeccCCCceeEEEEeeccCCCccccCCCcHHHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHH
Confidence 35699999999999 998665321 01221 2234444555 889999 999999999999987
Q ss_pred HHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC---CC-CCceeeeee--eCCC-------C---------HH
Q 013681 153 RIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFG---GA-SNSLSTAIT--IPAV-------S---------PA 206 (438)
Q Consensus 153 ~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg---g~-~~~ip~~~~--i~~~-------~---------~~ 206 (438)
+.- .+....++++||||||||+.||..|+|||+||| |. ++++|++.. +..+ + ..
T Consensus 95 ~~dgt~~~~~lg~nAi~aVs~Al~Da~ak~~g~PLy~lLG~~~G~~~~~lpvp~~~~inGg~ha~~~~~~qefmi~p~~a 174 (439)
T 2akz_A 95 ELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGA 174 (439)
T ss_dssp HHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSCCBCEEEEEEEECGGGSSSSCCSCEEEEECTTC
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcccCCCCceeEEEEEEEecCccccccccccccceecCCCc
Confidence 631 123346799999999999999999999999999 86 567887532 1000 0 01
Q ss_pred HHHHHHHHHhhcCCcEEEE----e-------cCC------CchHHHHHHHHHHh----hCC--CcEEEEeC---------
Q 013681 207 EASELASKYCKLGFSTLKL----N-------VGR------NITADFDVLQAIHA----VHP--HCSFILDA--------- 254 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKl----K-------vG~------d~~~di~~l~aiR~----~~~--~~~L~vDA--------- 254 (438)
+..+++.++.++||+.+|. | +|. +++.+.+.++.|++ +|+ ++.|++|+
T Consensus 175 ~~~~ea~~~~~e~~~~lK~~lk~k~G~~~~~vGdegg~~p~~~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g 254 (439)
T 2akz_A 175 ESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDG 254 (439)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHCGGGGCBCTTSCBCCSCCCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccCcCCCcccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCC
Confidence 1224445555677887773 3 431 34566777776665 354 79999999
Q ss_pred ------------CCCCCHHHHHHHHHH-hhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCC-CCHHHHH
Q 013681 255 ------------NEGYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC-RSLNDVQ 320 (438)
Q Consensus 255 ------------N~~~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl-~~~~d~~ 320 (438)
|+.|+++++++++.+ +++|++ .|||||++++||++|++|++ ++++||++||.. +++.+++
T Consensus 255 ~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i--~~IEdPl~~dD~~g~~~L~~----~~~ipI~gDE~~vt~~~~~~ 328 (439)
T 2akz_A 255 KYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPV--VSIEDPFDQDDWAAWSKFTA----NVGIQIVGDDLTVTNPKRIE 328 (439)
T ss_dssp EECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----TCSSEEEESTTTTTCHHHHH
T ss_pred eeEEeccccccccccCCHHHHHHHHHHHHHhCCC--cEEECCCCcccHHHHHHHHh----CCCCEEEeCCCccCCHHHHH
Confidence 445688998888655 688986 69999999999999999986 589999999974 7999999
Q ss_pred HHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEcc-CCchhHHHHHHHHHHhhcCC
Q 013681 321 KVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFALHLAAGLGC 381 (438)
Q Consensus 321 ~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s-~~es~ig~~a~~hla~al~~ 381 (438)
++++.+++|++++|++++| ++++++++++|+++|+.+++++ ..|+.++..|.+|++.+.+.
T Consensus 329 ~~i~~~a~d~i~iKv~qiGGitea~~ia~lA~~~g~~~~~sh~~gEt~~~~iA~lava~~~~~ 391 (439)
T 2akz_A 329 RAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQ 391 (439)
T ss_dssp HHHHTTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCCSCCHHHHHHHHHTCSE
T ss_pred HHHHhCCCCEEEechhhcCCHHHHHHHHHHHHHCCCeEEeecCCCccHHHHHHHHHHHhcCCc
Confidence 9999999999999999998 9999999999999999998854 45888887777777766543
|
| >3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-24 Score=215.06 Aligned_cols=295 Identities=21% Similarity=0.279 Sum_probs=206.8
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC-----------C-----CCCc-hHHHHHH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV-----------P-----LVTG-DQTKALV 127 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~-----------~-----~~s~-~~~~~~~ 127 (438)
|.|++|..+.+ -.|+| .++|.|+|+|++|.. .+-+... + .|.+ ....++.
T Consensus 6 m~I~~i~ar~i--------ldsrG----nptvev~v~~~~g~~-ra~vPsgaStG~~Ea~elrd~d~~~y~Gkgv~kAv~ 72 (441)
T 3qtp_A 6 MSIQKVHAREI--------LDSRG----NPTIEVEITTGKGMF-RSCVPSGASTGVHEAVELRDGDKKRYGGKGVLKAVE 72 (441)
T ss_dssp TBCCEEEEEEE--------ECTTS----CEEEEEEEEETTEEE-EEECCCCCSCCSSSCCCCCCCCTTSGGGTCCHHHHH
T ss_pred cEEEEEEEEEE--------ECCCC----CEEEEEEEEECCCcE-EEecccCCCCCcceeEeecCCCcccccCccHHHHHH
Confidence 66777776553 22332 578999999998765 3333221 0 0111 1234455
Q ss_pred HHHH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC---CC-CCceeeee
Q 013681 128 KVRE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFG---GA-SNSLSTAI 198 (438)
Q Consensus 128 ~~~~-i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg---g~-~~~ip~~~ 198 (438)
.+++ ++|.|+|.++.+++.+++.|.+.- .......++.|+++|++.+.|+..|+|||++|+ |. ...+|+..
T Consensus 73 ~vn~~iap~Lig~~~~dQ~~iD~~m~~lDgT~nks~lGaNail~vSlAvakAaA~~~~~PLy~~l~~l~g~~~~~lPvP~ 152 (441)
T 3qtp_A 73 NVNTIIGPALLGKNVLNQAELDEMMIKLDGTNNKGKLGANAILGCSMSICRAAAAEKGLPLYKYLAELTGHKEMTMPVPC 152 (441)
T ss_dssp HHHHTHHHHHTTCBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCCCBCEEE
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccCCCCccCCCccchhhHHHHHHHHHHHhcCCcHHHHHHhhcCCCCceeccce
Confidence 5555 789999999999999988886531 122336789999999999999999999999996 43 33455421
Q ss_pred --e------------------eC--CCCHHHHHHH-------HHHHhhc--CCcEEEEecC------CCc---hHHHHHH
Q 013681 199 --T------------------IP--AVSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNI---TADFDVL 238 (438)
Q Consensus 199 --~------------------i~--~~~~~~~~~~-------~~~~~~~--Gf~~iKlKvG------~d~---~~di~~l 238 (438)
. +| ..+..+..+. +++.++. |.. -..+| +++ ++-++.|
T Consensus 153 ~nvinGG~ha~n~l~~QEfmi~P~ga~sf~ealr~~~evyh~Lk~~l~~k~g~~--~t~vgdEGgfap~~~~~~eaL~ll 230 (441)
T 3qtp_A 153 FNVINGGAHAGNALAMQEFMICPTGATNFHEALRMAAETYQCLKVVIKAKYGQD--ATNVGDEGGFAPNVSGAREALDLL 230 (441)
T ss_dssp EEEEECGGGCSSSCCSSEEEEECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGG--GGCBCTTSCBCCCCSSHHHHHHHH
T ss_pred EeeecCCccCCCccccceeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHhcCcc--cccccCCcccCCCCCCHHHHHHHH
Confidence 1 12 1244443222 2232222 321 11233 233 4445554
Q ss_pred -HHHHhhC--CCcEEEEeCC---------C-----------------CCCHHHHHHHHHH-hhhCCCCCceEecCCCCCC
Q 013681 239 -QAIHAVH--PHCSFILDAN---------E-----------------GYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDD 288 (438)
Q Consensus 239 -~aiR~~~--~~~~L~vDAN---------~-----------------~~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d 288 (438)
++|.++| .++.|.+|+- + .+|++|++++++. +++|++ .|||||++++|
T Consensus 231 ~~Ai~~aGy~~~i~i~lD~Aasefy~~~~g~Y~l~f~~~~~~~~~~~~~t~~elid~y~~lle~ypI--~~IEDPl~~dD 308 (441)
T 3qtp_A 231 VEAIAKAGYTGKIEIAMDCAASEFYNEETKKYDLGKKIPADKKDPSLVKDVDGLIAEYVDYGKHYPI--ASIEDPFAEDD 308 (441)
T ss_dssp HHHHHHHTCTTTCEEEEECCGGGGEETTTTEEETTTTSCGGGCCGGGEECHHHHHHHHHHHHHHSCE--EEEESCSCTTC
T ss_pred HHHHHHcCCCceEEEccchhHHHhhhccCCeEEeecCCcccccccccccCHHHHHHHHHHHhhhcce--eeecCCCChHH
Confidence 5666665 5899999873 1 2578999999887 688986 69999999999
Q ss_pred hhhHHHHHHhhccccC-CeEEEcCC-CCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-Cc
Q 013681 289 WSGLHDVSNFARDTYG-ISVVADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IE 364 (438)
Q Consensus 289 ~~~~a~L~~~~r~~~~-iPIa~dEs-l~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~e 364 (438)
|+++++|++ +++ +||++||. +.++.+++++++.++++++++|++++| +|++++++++|+++|+++|+++. .|
T Consensus 309 ~eg~a~Lt~----~lg~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKvnqiGGITEalkaa~lA~~~G~~vmvsHrsgE 384 (441)
T 3qtp_A 309 WAAWNKFTV----EHGNFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQIGTLTETFKTIKMAQEKGWGVMASHRSGE 384 (441)
T ss_dssp HHHHHHHHH----HTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECGGGTCCHHHHHHHHHHHHHTTCEEEEECCSSC
T ss_pred HHHHHHHHH----hcCCceEEeccccccCHHHHHHHHHcCCCCEEEecccccccHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence 999999997 464 99999997 678999999999999999999999998 99999999999999999998764 57
Q ss_pred hhHHHHHHHHHHhhcCCc
Q 013681 365 TRLATGFALHLAAGLGCI 382 (438)
Q Consensus 365 s~ig~~a~~hla~al~~~ 382 (438)
+..+ .+++|+.++++.
T Consensus 385 TeDt--~iAdLAVal~~g 400 (441)
T 3qtp_A 385 TEDT--FIADLVVGLNCK 400 (441)
T ss_dssp CSCC--HHHHHHHHTTCE
T ss_pred ccHh--HHHHHHHHhCCC
Confidence 7655 456677666543
|
| >3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-23 Score=207.26 Aligned_cols=279 Identities=23% Similarity=0.300 Sum_probs=198.5
Q ss_pred eeEEEEEEEEcCCcEEEEEEecC-----------C-----CCCc-hHHHHHHHHHH-HhhHhcCCCCCCHHHHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVV-----------P-----LVTG-DQTKALVKVRE-ACQFLRQSPPTTLNFALDEIARI 154 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~-----------~-----~~s~-~~~~~~~~~~~-i~~~l~g~~~~~~~~~~~~l~~~ 154 (438)
.++|.|+|+|++|.. .+-+... + .|.+ ....++..+++ +.|.|+|.++.++..+.+.|.+.
T Consensus 18 npTvEv~v~~~~G~~-ra~vPsGaStG~~Ea~elrD~d~~~y~Gkgv~kAv~~vn~~Iap~Lig~d~~dQ~~iD~~m~~~ 96 (452)
T 3otr_A 18 NPTIEVDVSTEGGVF-RAAVPSGASTGIYEALELRDKDPKRYLGKGVLNAVEIVRQEIKPALLGKDPCDQKGIDMLMVEQ 96 (452)
T ss_dssp CEEEEEEEEETTEEE-EEECCCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHTTCCTTCHHHHHHHHHHT
T ss_pred CEEEEEEEEECCccE-EEeccccCCCCcceEEeecCCCcccccCccHHHHHHHHHHHHHHHHcCCChHhHHHHHHHHHHH
Confidence 578999999988764 3332211 0 0111 12344555555 78999999999999998888733
Q ss_pred CCC----------ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC---CCC---Cceeeeee-------------------
Q 013681 155 LPG----------SEFASVRAGVEMALIDAVANSIDIPLWRLFG---GAS---NSLSTAIT------------------- 199 (438)
Q Consensus 155 ~~g----------~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg---g~~---~~ip~~~~------------------- 199 (438)
+.| .....+..|+.+|++.+.|...|+|||++|| |.. ..+|+...
T Consensus 97 lDgT~n~~~~~ks~lGaNail~vSlAvakAaA~~~~~PLy~yi~~l~g~~~~~~~lPvP~~nvinGG~ha~n~l~~QEfm 176 (452)
T 3otr_A 97 LDGTKNEWGYSKSKLGANAILGVSIACCRAGAASKGLPLYKYIATLAGKTIDKMVMPVPFFNVINGGEHAGNGLALQEFL 176 (452)
T ss_dssp TTCCEETTEECCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCSSSEEECEECEEEEECGGGCSSSCCSSEEE
T ss_pred hcCCCCcccccccccCcchhhHHHHHHHHHHHHhcCCcHHHHHHHhcCCCCcceecccceEEEecCcccCCCCCCcCeEE
Confidence 332 2336789999999999999999999999998 433 23454210
Q ss_pred -eC--CCCHHHHHHH-------HHHHhhc--CCcEEEEecC------CCc---hHHHHHH-HHHHhhC--CCcEEEEeCC
Q 013681 200 -IP--AVSPAEASEL-------ASKYCKL--GFSTLKLNVG------RNI---TADFDVL-QAIHAVH--PHCSFILDAN 255 (438)
Q Consensus 200 -i~--~~~~~~~~~~-------~~~~~~~--Gf~~iKlKvG------~d~---~~di~~l-~aiR~~~--~~~~L~vDAN 255 (438)
+| ..++.+..+. +++.++. |.. -..+| +++ ++-+++| ++|.++| .++.|.+|+-
T Consensus 177 i~P~ga~sf~ealr~g~evyh~Lk~vl~~k~g~~--~t~vgDEGgfap~~~~~~eaL~ll~~Ai~~aGy~~~i~i~lD~A 254 (452)
T 3otr_A 177 IAPVGAPNIREAIRYGSETYHHLKNVIKNKYGLD--ATNVGDEGGFAPNVATAEEALNLLVEAIKAAGYEGKIKIAFDAA 254 (452)
T ss_dssp EECTTCSSHHHHHHHHHHHHHHHHHHHHHHHCGG--GGCBCTTSCBCCCCCSHHHHHHHHHHHHHHHTCTTTSEEEEECC
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCc--ccccccccccCCCCCCHHHHHHHHHHHHHHcCCCceEEEccccc
Confidence 12 2245443222 2232222 421 11233 233 3445544 5666665 5789999872
Q ss_pred C------------------------CCCHHHHHHHHHH-hhhCCCCCceEecCCCCCChhhHHHHHHhhccccC--CeEE
Q 013681 256 E------------------------GYTSEEAVEVLGK-LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG--ISVV 308 (438)
Q Consensus 256 ~------------------------~~s~~~A~~~l~~-L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~--iPIa 308 (438)
. .+|++|++++++. +++|++ .|||||++++||+++++|++ +++ +||+
T Consensus 255 asefy~~~~g~Y~l~fk~~~~~~~~~~t~~Elid~y~~lle~ypI--v~IEDPl~~dD~eg~a~Lt~----~lg~~iqIv 328 (452)
T 3otr_A 255 ASEFYKQDEKKYDLDYKCKTKNASKHLTGEKLKEVYEGWLKKYPI--ISVEDPFDQDDFASFSAFTK----DVGEKTQVI 328 (452)
T ss_dssp GGGGEETTTTEEETTTTCSSCCGGGEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----HHTTTSEEE
T ss_pred hHhheeccCCeEEeeccCCCCcccccccHHHHHHHHHHHHhhhCc--eEEecCCChhhHHHHHHHHH----hhCCCeEEE
Confidence 1 2578999999977 688986 69999999999999999997 355 9999
Q ss_pred EcCC-CCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccC-CchhHHHHHHHHHHhhcCCc
Q 013681 309 ADES-CRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGM-IETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 309 ~dEs-l~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~-~es~ig~~a~~hla~al~~~ 382 (438)
+||. +.++.+++++++.++++++++|++++| +|++++++++|+++|+++|+++. -|+.- ..+++|+.+++++
T Consensus 329 GDDl~vTn~~~i~~~Ie~~a~n~IlIKvnQIGgITEalka~~lA~~~G~~vmvshrSGETeD--~~iAdLaVgl~~g 403 (452)
T 3otr_A 329 GDDILVTNILRIEKALKDKACNCLLLKVNQIGSVTEAIEACLLAQKSGWGVQVSHRSGETED--SFIADLVVGLRCG 403 (452)
T ss_dssp ESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCCHHHHHHHHHHHHHTTCEEEEECCSSCCSC--CHHHHHHHHTTCC
T ss_pred eCccccCCHHHHHHHHhcCCCCEEEeeccccccHHHHHHHHHHHHHcCCeEEEeCCCCCCch--hHHHHHHHHcCCC
Confidence 9997 678999999999999999999999998 99999999999999999999774 36543 3567888887664
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=79.20 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=91.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHh-hCCC--cEEEEeCC----C
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH--CSFILDAN----E 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~-~~~~--~~L~vDAN----~ 256 (438)
.+.++...+.||..+.|+.+. +++. -++.+++||+ ++++ +-+++.++ +
T Consensus 155 ~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~ 234 (349)
T 3hgj_A 155 VEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEG 234 (349)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTT
T ss_pred HHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCC
Confidence 455677788999999999863 1222 2678899998 4666 56677775 4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEecCC------------CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHH
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPV------------HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqPl------------~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~ 324 (438)
+|+.++++++++.|++.++. ||+-.. +..+++..+++++ .+++||.....+.+.++.+++++
T Consensus 235 g~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~e~a~~~l~ 308 (349)
T 3hgj_A 235 GWSLEDTLAFARRLKELGVD--LLDCSSGGVVLRVRIPLAPGFQVPFADAVRK----RVGLRTGAVGLITTPEQAETLLQ 308 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCC--EEEEECCCSCSSSCCCCCTTTTHHHHHHHHH----HHCCEEEECSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEecCCcCcccccCCCccccHHHHHHHHH----HcCceEEEECCCCCHHHHHHHHH
Confidence 89999999999999999974 888653 1123444455543 67999999999999999999999
Q ss_pred cCCccEEEec
Q 013681 325 ENLASVVNIK 334 (438)
Q Consensus 325 ~~a~d~i~lk 334 (438)
.+.+|.|.+=
T Consensus 309 ~G~aD~V~iG 318 (349)
T 3hgj_A 309 AGSADLVLLG 318 (349)
T ss_dssp TTSCSEEEES
T ss_pred CCCceEEEec
Confidence 9999998864
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=4.1e-05 Score=75.82 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHhhCC-CcEEEEeC----CC
Q 013681 207 EASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHAVHP-HCSFILDA----NE 256 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~~~~-~~~L~vDA----N~ 256 (438)
+..+.++...+.||..|+|+.+. +++. -++.+++||+..+ .+-+++.. ++
T Consensus 145 ~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~ 224 (338)
T 1z41_A 145 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDK 224 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTT
T ss_pred HHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCC
Confidence 34566777788999999999862 1222 3778899998542 34455554 56
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEe--------c--CCCC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFE--------Q--PVHR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iE--------q--Pl~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~ 325 (438)
+|+.+++.++++.|++.++. ||+ + |..+ .+++..+++++ .+++||.+...+.+.++..++++.
T Consensus 225 g~~~~~~~~~a~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~s~~~a~~~l~~ 298 (338)
T 1z41_A 225 GLDIADHIGFAKWMKEQGVD--LIDCSSGALVHADINVFPGYQVSFAEKIRE----QADMATGAVGMITDGSMAEEILQN 298 (338)
T ss_dssp SCCHHHHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHHH----HHCCEEEECSSCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEecCccccCCCCCCccchHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHHc
Confidence 89999999999999999874 777 2 3322 24555556654 579999999999999999999999
Q ss_pred CCccEEEec
Q 013681 326 NLASVVNIK 334 (438)
Q Consensus 326 ~a~d~i~lk 334 (438)
+.+|.|.+-
T Consensus 299 G~aD~V~iG 307 (338)
T 1z41_A 299 GRADLIFIG 307 (338)
T ss_dssp TSCSEEEEC
T ss_pred CCceEEeec
Confidence 989998864
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=5.2e-05 Score=81.82 Aligned_cols=122 Identities=12% Similarity=0.174 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHh-hCCCcEE--EEeC---
Q 013681 206 AEASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPHCSF--ILDA--- 254 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~-~~~~~~L--~vDA--- 254 (438)
+++.+.++...+.||..++++.+. +++. -++.+++||+ ++++..+ ++.+
T Consensus 141 ~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~ 220 (671)
T 1ps9_A 141 DNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDL 220 (671)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECcccc
Confidence 344566777788999999998752 1222 3778899998 5777554 4444
Q ss_pred -CCCCCHHHHHHHHHHhhhCCCCCceEe-------cCCCC--------CChhhHHHHHHhhccccCCeEEEcCCCCCHHH
Q 013681 255 -NEGYTSEEAVEVLGKLNDMGVIPVLFE-------QPVHR--------DDWSGLHDVSNFARDTYGISVVADESCRSLND 318 (438)
Q Consensus 255 -N~~~s~~~A~~~l~~L~~~~l~~~~iE-------qPl~~--------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d 318 (438)
+++|+.++++++++.|++.++. ||+ ++.+. ..++..+++ |+.+++||.+...+.++++
T Consensus 221 ~~~g~~~~~~~~~a~~l~~~g~d--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~iPvi~~Ggi~~~~~ 294 (671)
T 1ps9_A 221 VEDGGTFAETVELAQAIEAAGAT--IINTGIGWHEARIPTIATPVPRGAFSWVTRKL----KGHVSLPLVTTNRINDPQV 294 (671)
T ss_dssp STTCCCHHHHHHHHHHHHHHTCS--EEEEEECBTTCSSCSSSTTSCTTTTHHHHHHH----TTSCSSCEEECSSCCSHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCC--EEEcCCCccccccccccccCCcchHHHHHHHH----HHhcCceEEEeCCCCCHHH
Confidence 4589999999999999999874 784 43331 112333344 4578999999999999999
Q ss_pred HHHHHHcCCccEEEe
Q 013681 319 VQKVMQENLASVVNI 333 (438)
Q Consensus 319 ~~~ll~~~a~d~i~l 333 (438)
++++++.+.+|+|.+
T Consensus 295 a~~~l~~g~aD~V~~ 309 (671)
T 1ps9_A 295 ADDILSRGDADMVSM 309 (671)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHcCCCCEEEe
Confidence 999999999999885
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=4.9e-05 Score=76.46 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=89.4
Q ss_pred HHHHHHHHh-hcCCcEEEEecCC-----------------------CchH----HHHHHHHHHh-hCCC-cEEEEeCC--
Q 013681 208 ASELASKYC-KLGFSTLKLNVGR-----------------------NITA----DFDVLQAIHA-VHPH-CSFILDAN-- 255 (438)
Q Consensus 208 ~~~~~~~~~-~~Gf~~iKlKvG~-----------------------d~~~----di~~l~aiR~-~~~~-~~L~vDAN-- 255 (438)
..+.++..+ +.||..|+|+.+. +++. -++.+++||+ ++++ +-+++.++
T Consensus 176 f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~ 255 (379)
T 3aty_A 176 FVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNG 255 (379)
T ss_dssp HHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccc
Confidence 345567778 8999999998752 2222 2567899998 4654 66666664
Q ss_pred -----CCCCHHHHHHHHHHhhhCCCCCceEecCCCC-----CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc
Q 013681 256 -----EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR-----DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (438)
Q Consensus 256 -----~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~-----~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~ 325 (438)
++|+.++++++++.|+++++. |||.+... ...+ .++++ +.+++||.+.+.+ +.+++.++++.
T Consensus 256 ~~~~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~~-~~~ir----~~~~iPvi~~G~i-t~~~a~~~l~~ 327 (379)
T 3aty_A 256 VHGMIDSNPEALTKHLCKKIEPLSLA--YLHYLRGDMVNQQIGDV-VAWVR----GSYSGVKISNLRY-DFEEADQQIRE 327 (379)
T ss_dssp GGGCCCSCHHHHHHHHHHHHGGGCCS--EEEEECSCTTSCCCCCH-HHHHH----TTCCSCEEEESSC-CHHHHHHHHHT
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCCC--EEEEcCCCcCCCCccHH-HHHHH----HHCCCcEEEECCC-CHHHHHHHHHc
Confidence 478899999999999999974 99987632 1123 44554 4789999999998 89999999999
Q ss_pred CCccEEEec
Q 013681 326 NLASVVNIK 334 (438)
Q Consensus 326 ~a~d~i~lk 334 (438)
+.+|+|.+=
T Consensus 328 g~aD~V~ig 336 (379)
T 3aty_A 328 GKVDAVAFG 336 (379)
T ss_dssp TSCSEEEES
T ss_pred CCCeEEEec
Confidence 999998763
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4.6e-05 Score=76.62 Aligned_cols=122 Identities=11% Similarity=0.181 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHh-hCCC-cEEEEeCC---
Q 013681 206 AEASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH-CSFILDAN--- 255 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~-~~~~-~~L~vDAN--- 255 (438)
+++.+.++..++.||..|+|+.+. +++. -++.+++||+ ++++ +-+++-.+
T Consensus 167 ~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~ 246 (376)
T 1icp_A 167 NEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHY 246 (376)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 445666778888999999999862 1222 3667899998 4654 44455433
Q ss_pred ----CCCCHHHHHHHHHHhhhCCCCCceEecCCCC--------CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHH
Q 013681 256 ----EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHR--------DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323 (438)
Q Consensus 256 ----~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~--------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll 323 (438)
+.++.++++++++.|+++++. |||-+... .+++..+++++ ..++||++.+.+ +.+++++++
T Consensus 247 ~g~~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~vr~----~~~iPvi~~G~i-~~~~a~~~l 319 (376)
T 1icp_A 247 NEAGDTNPTALGLYMVESLNKYDLA--YCHVVEPRMKTAWEKIECTESLVPMRK----AYKGTFIVAGGY-DREDGNRAL 319 (376)
T ss_dssp TTCCCSCHHHHHHHHHHHHGGGCCS--EEEEECCSCCC------CCCCSHHHHH----HCCSCEEEESSC-CHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCcccCCCCccccHHHHHHHHH----HcCCCEEEeCCC-CHHHHHHHH
Confidence 345788899999999999974 89875431 23444555654 678999999998 899999999
Q ss_pred HcCCccEEEec
Q 013681 324 QENLASVVNIK 334 (438)
Q Consensus 324 ~~~a~d~i~lk 334 (438)
+.+.+|+|.+=
T Consensus 320 ~~g~aD~V~~g 330 (376)
T 1icp_A 320 IEDRADLVAYG 330 (376)
T ss_dssp HTTSCSEEEES
T ss_pred HCCCCcEEeec
Confidence 99999998763
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=73.56 Aligned_cols=122 Identities=9% Similarity=0.161 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHhh-CCC-cEEEEeCC---
Q 013681 206 AEASELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHAV-HPH-CSFILDAN--- 255 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~~-~~~-~~L~vDAN--- 255 (438)
++..+.++..++.||..|+|..+. +++ --++.+++||+. +++ +-+++-++
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~ 240 (364)
T 1vyr_A 161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF 240 (364)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence 445566777788999999998752 122 236678999984 554 44555444
Q ss_pred -----CCCCHHHHHHHHHHhhhCCCCCceEecCCC------CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHH
Q 013681 256 -----EGYTSEEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (438)
Q Consensus 256 -----~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~ 324 (438)
+.++.+++++++++|++.++. ||+-+.. ..+++..+++++ .+++||++...+ +.++++++++
T Consensus 241 ~~~~~~~~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~~~~~~~~v~~----~~~iPvi~~Ggi-t~~~a~~~l~ 313 (364)
T 1vyr_A 241 QNVDNGPNEEADALYLIEELAKRGIA--YLHMSETDLAGGKPYSEAFRQKVRE----RFHGVIIGAGAY-TAEKAEDLIG 313 (364)
T ss_dssp TTBCCCTTHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHHH----HCCSEEEEESSC-CHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCC--EEEEecCcccCCCcccHHHHHHHHH----HCCCCEEEECCc-CHHHHHHHHH
Confidence 356788999999999999974 8887653 234544555554 689999999998 8999999999
Q ss_pred cCCccEEEec
Q 013681 325 ENLASVVNIK 334 (438)
Q Consensus 325 ~~a~d~i~lk 334 (438)
.+.+|+|.+=
T Consensus 314 ~g~aD~V~~g 323 (364)
T 1vyr_A 314 KGLIDAVAFG 323 (364)
T ss_dssp TTSCSEEEES
T ss_pred CCCccEEEEC
Confidence 9989998763
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00027 Score=70.08 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=86.9
Q ss_pred HHHHHHHhhcCCcEEEEecC---------------------CCchH----HHHHHHHHHh-hCCC--cEEEEeCC----C
Q 013681 209 SELASKYCKLGFSTLKLNVG---------------------RNITA----DFDVLQAIHA-VHPH--CSFILDAN----E 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG---------------------~d~~~----di~~l~aiR~-~~~~--~~L~vDAN----~ 256 (438)
.+.++...+.||..+.|..+ .+++. -++.+++||+ ++++ +-+++-++ +
T Consensus 146 ~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~ 225 (343)
T 3kru_A 146 GEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEG 225 (343)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTT
T ss_pred HHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhcc
Confidence 45566777899999999953 12222 2678899998 4666 44555554 4
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEecCC----------CC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPV----------HR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqPl----------~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~ 325 (438)
+|+.++++++++.|++. +. ||+-.. .+ .+++..++++ +..++||.+...+.+.++.+++++.
T Consensus 226 g~~~~~~~~~a~~l~~~-vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~Ggi~t~e~Ae~~l~~ 298 (343)
T 3kru_A 226 GINIDMMVEYINMIKDK-VD--LIDVSSGGLLNVDINLYPGYQVKYAETIK----KRCNIKTSAVGLITTQELAEEILSN 298 (343)
T ss_dssp SCCHHHHHHHHHHHTTT-CS--EEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHHTCEEEEESSCCCHHHHHHHHHT
T ss_pred CccHHHHHHHHHHhhcc-cc--EEeccCCceEeeeecccCceeehHHHHHH----HhcCcccceeeeeeHHHHHHHHHhc
Confidence 78999999999999998 74 887631 11 2344444454 3678999999999999999999999
Q ss_pred CCccEEEe
Q 013681 326 NLASVVNI 333 (438)
Q Consensus 326 ~a~d~i~l 333 (438)
+.+|.|.+
T Consensus 299 G~aD~V~i 306 (343)
T 3kru_A 299 ERADLVAL 306 (343)
T ss_dssp TSCSEEEE
T ss_pred hhhHHHHH
Confidence 99998875
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0001 Score=73.64 Aligned_cols=119 Identities=16% Similarity=0.149 Sum_probs=87.4
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHh-hCCC--cEEEEeCCC----
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH--CSFILDANE---- 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~-~~~~--~~L~vDAN~---- 256 (438)
.+.++..++.||..+.|+.+. +++. -++.+++||+ ++++ +-+|+.++.
T Consensus 161 ~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~ 240 (363)
T 3l5l_A 161 VDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGR 240 (363)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSC
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCC
Confidence 455667778999999999752 1222 2668899998 4666 455555432
Q ss_pred C-CCHHHHHHHHHHhhhCCCCCceEecCC-----------CC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHH
Q 013681 257 G-YTSEEAVEVLGKLNDMGVIPVLFEQPV-----------HR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323 (438)
Q Consensus 257 ~-~s~~~A~~~l~~L~~~~l~~~~iEqPl-----------~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll 323 (438)
+ |+.++++++++.|++.++. ||+-.. .+ .+++..++++ +..++||.+...+.+.++.++++
T Consensus 241 G~~~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~GgI~s~e~a~~~l 314 (363)
T 3l5l_A 241 DEQTLEESIELARRFKAGGLD--LLSVSVGFTIPDTNIPWGPAFMGPIAERVR----REAKLPVTSAWGFGTPQLAEAAL 314 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC--EEEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHHTCCEEECSSTTSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCccccccccCCCcchhHHHHHHHH----HHcCCcEEEeCCCCCHHHHHHHH
Confidence 4 8899999999999999874 887442 11 2333344444 36789999999999999999999
Q ss_pred HcCCccEEEe
Q 013681 324 QENLASVVNI 333 (438)
Q Consensus 324 ~~~a~d~i~l 333 (438)
+.+.+|.|.+
T Consensus 315 ~~G~aD~V~i 324 (363)
T 3l5l_A 315 QANQLDLVSV 324 (363)
T ss_dssp HTTSCSEEEC
T ss_pred HCCCccEEEe
Confidence 9998998875
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00087 Score=67.24 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHh-hCCC-cEEEEeCC---
Q 013681 206 AEASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH-CSFILDAN--- 255 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~-~~~~-~~L~vDAN--- 255 (438)
++..+.++..++.||..|+|+.+. +++. -++.+++||+ ++++ +-+++-++
T Consensus 166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~ 245 (377)
T 2r14_A 166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence 444566777788999999998752 1222 3667899998 4654 55555443
Q ss_pred ----CCCCHHHHHHHHHHhhhCCCCCceEecCCC------C-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHH
Q 013681 256 ----EGYTSEEAVEVLGKLNDMGVIPVLFEQPVH------R-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (438)
Q Consensus 256 ----~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~------~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~ 324 (438)
++|+.++++++++.|++.++. ||+-.-. . .+++..+++++ ..++||.+...+ +.++..++++
T Consensus 246 ~~~~~~~~~~~~~~la~~le~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~ik~----~~~iPvi~~Ggi-~~~~a~~~l~ 318 (377)
T 2r14_A 246 FGLTDDEPEAMAFYLAGELDRRGLA--YLHFNEPDWIGGDITYPEGFREQMRQ----RFKGGLIYCGNY-DAGRAQARLD 318 (377)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHTTCS--EEEEECCC------CCCTTHHHHHHH----HCCSEEEEESSC-CHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCcccCCCCcchHHHHHHHHH----HCCCCEEEECCC-CHHHHHHHHH
Confidence 467889999999999999874 7775331 1 13444555554 688999998888 6999999999
Q ss_pred cCCccEEEec
Q 013681 325 ENLASVVNIK 334 (438)
Q Consensus 325 ~~a~d~i~lk 334 (438)
.+.+|.|.+=
T Consensus 319 ~g~aD~V~ig 328 (377)
T 2r14_A 319 DNTADAVAFG 328 (377)
T ss_dssp TTSCSEEEES
T ss_pred CCCceEEeec
Confidence 9989998763
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0023 Score=63.93 Aligned_cols=122 Identities=11% Similarity=0.139 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC-cEEEEeCC---
Q 013681 206 AEASELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILDAN--- 255 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~-~~L~vDAN--- 255 (438)
++..+.++...+.||..|+|+.+. +++ --++.+++||+ ++++ +-+++-++
T Consensus 161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~ 240 (365)
T 2gou_A 161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTL 240 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCT
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcccccc
Confidence 344556677788999999998752 122 23567899998 4654 45555543
Q ss_pred ----CCCCHHHHHHHHHHhhhCCCCCceEecCCC-----C-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc
Q 013681 256 ----EGYTSEEAVEVLGKLNDMGVIPVLFEQPVH-----R-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (438)
Q Consensus 256 ----~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~-----~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~ 325 (438)
++++.+++.++++.|++.++. ||+-.-. + ..++..++++ +.+++||.+...+ +.++..++++.
T Consensus 241 ~~~~~~~~~~~~~~~a~~l~~~G~d--~i~v~~~~~~~~~~~~~~~~~~i~----~~~~iPvi~~Ggi-~~~~a~~~l~~ 313 (365)
T 2gou_A 241 NGTVDADPILTYTAAAALLNKHRIV--YLHIAEVDWDDAPDTPVSFKRALR----EAYQGVLIYAGRY-NAEKAEQAIND 313 (365)
T ss_dssp TSCCCSSHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHH----HHCCSEEEEESSC-CHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCcCCCCCccHHHHHHHH----HHCCCcEEEeCCC-CHHHHHHHHHC
Confidence 457889999999999999874 7876442 1 1233344454 3688999999888 89999999999
Q ss_pred CCccEEEec
Q 013681 326 NLASVVNIK 334 (438)
Q Consensus 326 ~a~d~i~lk 334 (438)
+.+|.|.+=
T Consensus 314 g~aD~V~ig 322 (365)
T 2gou_A 314 GLADMIGFG 322 (365)
T ss_dssp TSCSEEECC
T ss_pred CCcceehhc
Confidence 989998763
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0036 Score=61.87 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=87.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------CchHH----HHHHHHHHhhCC-CcEEEEeCC----CCC
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NITAD----FDVLQAIHAVHP-HCSFILDAN----EGY 258 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~d----i~~l~aiR~~~~-~~~L~vDAN----~~~ 258 (438)
.+.++...+.||..+.|..+. +++.. ++.+++||+..+ -+-+++-++ ++|
T Consensus 147 ~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~ 226 (340)
T 3gr7_A 147 QNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGL 226 (340)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSC
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCC
Confidence 455667778999999999872 12222 677899998532 356666665 578
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecC--------C--CC-CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQP--------V--HR-DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqP--------l--~~-~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
+.+++.++++.|++.++. +|+-- . .+ .+++..++++ +..++||...-.+.+.++.+++++.+.
T Consensus 227 ~~~~~~~la~~L~~~Gvd--~i~vs~g~~~~~~~~~~~~~~~~~~~~ik----~~~~iPVi~~GgI~s~e~a~~~L~~G~ 300 (340)
T 3gr7_A 227 TAKDYVPYAKRMKEQGVD--LVDVSSGAIVPARMNVYPGYQVPFAELIR----READIPTGAVGLITSGWQAEEILQNGR 300 (340)
T ss_dssp CGGGHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHH----HHTTCCEEEESSCCCHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCccCCCCCCCccccHHHHHHHH----HHcCCcEEeeCCCCCHHHHHHHHHCCC
Confidence 999999999999999874 66531 1 11 1344444454 367899999999999999999999998
Q ss_pred ccEEEec
Q 013681 328 ASVVNIK 334 (438)
Q Consensus 328 ~d~i~lk 334 (438)
+|.|.+=
T Consensus 301 aD~V~iG 307 (340)
T 3gr7_A 301 ADLVFLG 307 (340)
T ss_dssp CSEEEEC
T ss_pred eeEEEec
Confidence 9988763
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0026 Score=63.31 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC-cEEEEeCCC----
Q 013681 208 ASELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILDANE---- 256 (438)
Q Consensus 208 ~~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~-~~L~vDAN~---- 256 (438)
..+.++..++.||..|+|..+. +++ --++.+++||+ ++++ +-+|+-++.
T Consensus 163 f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g 242 (361)
T 3gka_A 163 FRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHT 242 (361)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSS
T ss_pred HHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCC
Confidence 3556677788999999999862 122 23678899998 4654 556666542
Q ss_pred ---CCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 257 ---GYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 257 ---~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
.++.+++.++++.|++.++. ||+-.-.....+..+++++ ..++||.+...+ ++++.+++++.+.+|.|.+
T Consensus 243 ~~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~ik~----~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~i 315 (361)
T 3gka_A 243 MGDSDPAATFGHVARELGRRRIA--FLFARESFGGDAIGQQLKA----AFGGPFIVNENF-TLDSAQAALDAGQADAVAW 315 (361)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCS--EEEEECCCSTTCCHHHHHH----HHCSCEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHcCCC--EEEECCCCCCHHHHHHHHH----HcCCCEEEeCCC-CHHHHHHHHHcCCccEEEE
Confidence 23467899999999999974 8887654322123344443 578999888887 9999999999998998775
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.003 Score=62.90 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=83.7
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHh-hCCC-cEEEEeCCCC----
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH-CSFILDANEG---- 257 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~-~~~~-~~L~vDAN~~---- 257 (438)
.+.++..++.||..|.|..+. +++. -++.+++||+ ++++ +-+|+-++..
T Consensus 156 ~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~ 235 (362)
T 4ab4_A 156 RSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDM 235 (362)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSC
T ss_pred HHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeecccccccc
Confidence 455677788999999999862 1222 3667899998 4654 5556655422
Q ss_pred ---CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 258 ---YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 258 ---~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
++.++++++++.|++.++. ||+-.-.....+..+++++ ..++||.+...+ ++++.+++++.+.+|.|.+
T Consensus 236 ~~~~~~~~~~~la~~l~~~Gvd--~i~v~~~~~~~~~~~~ik~----~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~i 307 (362)
T 4ab4_A 236 GDADRAETFTYVARELGKRGIA--FICSREREADDSIGPLIKE----AFGGPYIVNERF-DKASANAALASGKADAVAF 307 (362)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCS--EEEEECCCCTTCCHHHHHH----HHCSCEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred CCCCcHHHHHHHHHHHHHhCCC--EEEECCCCCCHHHHHHHHH----HCCCCEEEeCCC-CHHHHHHHHHcCCccEEEE
Confidence 2367899999999999974 8886554321123344443 578899888777 9999999999998998765
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0031 Score=63.78 Aligned_cols=126 Identities=10% Similarity=0.127 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCC---------------------CchH----HHHHHHHHHh-hCCC-cEEEEeCC---
Q 013681 206 AEASELASKYCKLGFSTLKLNVGR---------------------NITA----DFDVLQAIHA-VHPH-CSFILDAN--- 255 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~---------------------d~~~----di~~l~aiR~-~~~~-~~L~vDAN--- 255 (438)
++..+.++..++.||..|.|..+. +++. -++.+++||+ ++++ +-+++-++
T Consensus 171 ~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~ 250 (402)
T 2hsa_B 171 EDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDH 250 (402)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCS
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 344566777788999999999851 1222 3667899998 4643 44444332
Q ss_pred ----CCCCHHHHHHHHHHhhhCC------CCCceEec--------CCCCC-C--hh-hHHHHHHhhccccCCeEEEcCCC
Q 013681 256 ----EGYTSEEAVEVLGKLNDMG------VIPVLFEQ--------PVHRD-D--WS-GLHDVSNFARDTYGISVVADESC 313 (438)
Q Consensus 256 ----~~~s~~~A~~~l~~L~~~~------l~~~~iEq--------Pl~~~-d--~~-~~a~L~~~~r~~~~iPIa~dEsl 313 (438)
++++.++++++++.|++.+ +. ||+- +..+. . -. ....+.+.+|+..++||.+...+
T Consensus 251 ~g~~~~~~~~~~~~la~~le~~G~~gg~~vd--~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~iPvi~~G~i 328 (402)
T 2hsa_B 251 LDAMDSNPLSLGLAVVERLNKIQLHSGSKLA--YLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY 328 (402)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHTSCCS--EEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSSCEEEESSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCccCCceE--EEEEecCccccccCCccccccCCcchHHHHHHHHHHCCCCEEEeCCC
Confidence 3467889999999999888 64 5553 11110 0 00 01122333445688999998888
Q ss_pred CCHHHHHHHHHcCCccEEEec
Q 013681 314 RSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 314 ~~~~d~~~ll~~~a~d~i~lk 334 (438)
+.++.+++++.+.+|+|.+=
T Consensus 329 -~~~~a~~~l~~g~aD~V~ig 348 (402)
T 2hsa_B 329 -TRELGIEAVAQGDADLVSYG 348 (402)
T ss_dssp -CHHHHHHHHHTTSCSEEEES
T ss_pred -CHHHHHHHHHCCCCceeeec
Confidence 99999999999999998763
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.029 Score=54.68 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=96.0
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCC----------------chHHHHHHHHHHhhCCCcEEEEeCCC
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----------------ITADFDVLQAIHAVHPHCSFILDANE 256 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d----------------~~~di~~l~aiR~~~~~~~L~vDAN~ 256 (438)
..|+..++...+++++.+.++...+. |..|-+..|.+ ++.-.+.++++|+..+ +.+.|....
T Consensus 58 ~~~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~ 135 (318)
T 1vhn_A 58 ERNVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVS-GKFSVKTRL 135 (318)
T ss_dssp CTTEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCS-SEEEEEEES
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhC-CCEEEEecC
Confidence 44555666666899998888888888 99999998732 2345567888888543 556666666
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceE-------ecCC-CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLF-------EQPV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~i-------EqPl-~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~ 328 (438)
+|+.++..++++.+++.++. +| ++-. .+.+|+..++++ + ++||.++-.+.+.+++.++++...+
T Consensus 136 G~~~~~~~~~a~~l~~~G~d--~i~v~g~~~~~~~~~~~~~~~i~~i~-----~-~ipVi~~GgI~s~~da~~~l~~~ga 207 (318)
T 1vhn_A 136 GWEKNEVEEIYRILVEEGVD--EVFIHTRTVVQSFTGRAEWKALSVLE-----K-RIPTFVSGDIFTPEDAKRALEESGC 207 (318)
T ss_dssp CSSSCCHHHHHHHHHHTTCC--EEEEESSCTTTTTSSCCCGGGGGGSC-----C-SSCEEEESSCCSHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHhCCC--EEEEcCCCccccCCCCcCHHHHHHHH-----c-CCeEEEECCcCCHHHHHHHHHcCCC
Confidence 88877667899999998875 44 2321 223454444442 3 8999999999999999999986568
Q ss_pred cEEEecCC
Q 013681 329 SVVNIKLA 336 (438)
Q Consensus 329 d~i~lk~~ 336 (438)
|.|++=-.
T Consensus 208 d~V~iGR~ 215 (318)
T 1vhn_A 208 DGLLVARG 215 (318)
T ss_dssp SEEEESGG
T ss_pred CEEEECHH
Confidence 98887543
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.081 Score=56.96 Aligned_cols=124 Identities=10% Similarity=0.081 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhcCCcEEEEecCC----------------------Cch----HHHHHHHHHHh-hCCC--cEEEEeCC--
Q 013681 207 EASELASKYCKLGFSTLKLNVGR----------------------NIT----ADFDVLQAIHA-VHPH--CSFILDAN-- 255 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKvG~----------------------d~~----~di~~l~aiR~-~~~~--~~L~vDAN-- 255 (438)
+..+.++...+.||..+-|+.+. +++ --++.+++||+ .+++ +.+|+-++
T Consensus 157 ~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~ 236 (690)
T 3k30_A 157 WHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEE 236 (690)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 34556677788999999997642 233 23567899998 5766 56677554
Q ss_pred --CCCCHHHHHHHHHHhhhCCCCCceEe-------cCC-CC--CChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHH
Q 013681 256 --EGYTSEEAVEVLGKLNDMGVIPVLFE-------QPV-HR--DDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVM 323 (438)
Q Consensus 256 --~~~s~~~A~~~l~~L~~~~l~~~~iE-------qPl-~~--~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll 323 (438)
++|+.++++++++.|++ ++. +|+ ++. ++ ........+++.+|+..++||..--.+.++++.++++
T Consensus 237 ~~~g~~~~~~~~~~~~l~~-~~d--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l 313 (690)
T 3k30_A 237 IDGGITREDIEGVLRELGE-LPD--LWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTKPVVGVGRFTSPDAMVRQI 313 (690)
T ss_dssp STTSCCHHHHHHHHHHHTT-SSS--EEEEECSCHHHHTCCTTTCCTTTTHHHHTTSGGGCSSCEEECSCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh-hcC--EEEEecccccccCCCCccCCccccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHH
Confidence 57899999999999998 332 332 111 10 0001112344445567899999888899999999999
Q ss_pred HcCCccEEEe
Q 013681 324 QENLASVVNI 333 (438)
Q Consensus 324 ~~~a~d~i~l 333 (438)
+.+.+|.|.+
T Consensus 314 ~~g~~d~v~~ 323 (690)
T 3k30_A 314 KAGILDLIGA 323 (690)
T ss_dssp HTTSCSEEEE
T ss_pred HCCCcceEEE
Confidence 9999999874
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.041 Score=53.24 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=91.6
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCc-EEEEecC-----------CCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFS-TLKLNVG-----------RNITADFDVLQAIHAVHPHCSFILDANEGYTSE 261 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~-~iKlKvG-----------~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~ 261 (438)
.|+..++...+++++.+.++.+.+.||. .+-+.++ .+++.-.+.+++||+.. ++.+.+=-+..|+.+
T Consensus 94 ~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~-~~Pv~vKi~~~~~~~ 172 (311)
T 1jub_A 94 GPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLV 172 (311)
T ss_dssp SCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHH
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHH
Confidence 3444556566889999999999899999 9999885 13444456778888753 333443334447888
Q ss_pred HHHHHHHHhhhCCCCCceE------------e----cCCCC---------C------ChhhHHHHHHhhcccc--CCeEE
Q 013681 262 EAVEVLGKLNDMGVIPVLF------------E----QPVHR---------D------DWSGLHDVSNFARDTY--GISVV 308 (438)
Q Consensus 262 ~A~~~l~~L~~~~l~~~~i------------E----qPl~~---------~------d~~~~a~L~~~~r~~~--~iPIa 308 (438)
+..++++.+++.++. .| + .|... + .++..+++ ++.+ .+||.
T Consensus 173 ~~~~~a~~~~~~G~d--~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v----~~~~~~~ipvi 246 (311)
T 1jub_A 173 HFDIMAEILNQFPLT--YVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAF----YTRLKPEIQII 246 (311)
T ss_dssp HHHHHHHHHTTSCCC--EEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHH----HTTSCTTSEEE
T ss_pred HHHHHHHHHHHcCCc--EEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHH----HHhcCCCCCEE
Confidence 888999999988864 33 2 12110 1 12233333 3456 89999
Q ss_pred EcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 309 ADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 309 ~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
..=-+.+.+|+.+++..+ +|.+++=-
T Consensus 247 ~~GGI~~~~da~~~l~~G-Ad~V~vg~ 272 (311)
T 1jub_A 247 GTGGIETGQDAFEHLLCG-ATMLQIGT 272 (311)
T ss_dssp EESSCCSHHHHHHHHHHT-CSEEEECH
T ss_pred EECCCCCHHHHHHHHHcC-CCEEEEch
Confidence 999999999999999876 89888743
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.18 Score=49.70 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=94.3
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCC----------------chHHHHHHHHHHhhC--C-CcEEEEe
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN----------------ITADFDVLQAIHAVH--P-HCSFILD 253 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d----------------~~~di~~l~aiR~~~--~-~~~L~vD 253 (438)
..|+..++...+++.+.+.++...+.||..|-+..|.+ ++.-.+.++++++.. | .+++|+.
T Consensus 57 ~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g 136 (350)
T 3b0p_A 57 EHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLG 136 (350)
T ss_dssp GCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESC
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecC
Confidence 34555666667899998888888889999999998731 223345678888742 3 3444554
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCCceEecC-------------CCCCChhhHHHHHHhhcccc-CCeEEEcCCCCCHHHH
Q 013681 254 ANEGYTSEEAVEVLGKLNDMGVIPVLFEQP-------------VHRDDWSGLHDVSNFARDTY-GISVVADESCRSLNDV 319 (438)
Q Consensus 254 AN~~~s~~~A~~~l~~L~~~~l~~~~iEqP-------------l~~~d~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~ 319 (438)
.....+.+++.++++.+++.++...-+..- .++.+|+..+++++ .. ++||.+.=.+.+.+++
T Consensus 137 ~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~----~~~~iPVianGgI~s~eda 212 (350)
T 3b0p_A 137 LEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKG----DFPQLTFVTNGGIRSLEEA 212 (350)
T ss_dssp BTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHH----HCTTSEEEEESSCCSHHHH
T ss_pred cCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHH----hCCCCeEEEECCcCCHHHH
Confidence 444456678899999999888641122211 12235666677765 46 8999998899999999
Q ss_pred HHHHHcCCccEEEe
Q 013681 320 QKVMQENLASVVNI 333 (438)
Q Consensus 320 ~~ll~~~a~d~i~l 333 (438)
.++++ + +|.|++
T Consensus 213 ~~~l~-G-aD~V~i 224 (350)
T 3b0p_A 213 LFHLK-R-VDGVML 224 (350)
T ss_dssp HHHHT-T-SSEEEE
T ss_pred HHHHh-C-CCEEEE
Confidence 99997 4 898886
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.047 Score=52.87 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=92.1
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCc---EEEEecCC-----------CchHHHHHHHHHHhhCCCcEEEEeCCCCCC
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFS---TLKLNVGR-----------NITADFDVLQAIHAVHPHCSFILDANEGYT 259 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~---~iKlKvG~-----------d~~~di~~l~aiR~~~~~~~L~vDAN~~~s 259 (438)
.|+..++...+++++.+.++.+.+.||. .+-+.++. +++.-.+.+++||+.. ++.+.|-....|+
T Consensus 94 ~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~-~~Pv~vK~~~~~~ 172 (314)
T 2e6f_A 94 KPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY-GLPFGVKMPPYFD 172 (314)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH-CSCEEEEECCCCC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCCCC
Confidence 4555666667889998888888889999 89998861 3444456788888853 3344444455588
Q ss_pred HHHHHHHHHHhhhCC-CCCceEe----------------cCCCC---------------CChhhHHHHHHhhcccc-CCe
Q 013681 260 SEEAVEVLGKLNDMG-VIPVLFE----------------QPVHR---------------DDWSGLHDVSNFARDTY-GIS 306 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~-l~~~~iE----------------qPl~~---------------~d~~~~a~L~~~~r~~~-~iP 306 (438)
.++..++++.+.+.+ +. +|- .|... ..++..++++ +.. ++|
T Consensus 173 ~~~~~~~a~~~~~aG~~d--~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~----~~~~~ip 246 (314)
T 2e6f_A 173 IAHFDTAAAVLNEFPLVK--FVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFY----RRCPDKL 246 (314)
T ss_dssp HHHHHHHHHHHHTCTTEE--EEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHH----HHCTTSE
T ss_pred HHHHHHHHHHHHhcCCce--EEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHH----HhcCCCC
Confidence 889889999999888 53 442 11110 0123333443 356 899
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 307 VVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 307 Ia~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
|...=-+.+.+|+.+++..+ +|.+++=
T Consensus 247 vi~~GGI~~~~da~~~l~~G-Ad~V~ig 273 (314)
T 2e6f_A 247 VFGCGGVYSGEDAFLHILAG-ASMVQVG 273 (314)
T ss_dssp EEEESSCCSHHHHHHHHHHT-CSSEEEC
T ss_pred EEEECCCCCHHHHHHHHHcC-CCEEEEc
Confidence 99999999999999999887 7887763
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.17 Score=54.82 Aligned_cols=123 Identities=9% Similarity=0.091 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCCc--EEEEeC---
Q 013681 206 AEASELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPHC--SFILDA--- 254 (438)
Q Consensus 206 ~~~~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~~--~L~vDA--- 254 (438)
+++.+.|+..++.||..+.|..+. +++ --++.+++||+ ++++. -+|+-+
T Consensus 149 ~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~ 228 (729)
T 1o94_A 149 QFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTV 228 (729)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccC
Confidence 344566777778999999998753 122 24667899998 57663 334433
Q ss_pred --CCCCC-HHHHHHHHHHhhhCCCC---Cc------eEecCCCC-----C-ChhhHHHHHHhhccccCCeEEEcCCCCCH
Q 013681 255 --NEGYT-SEEAVEVLGKLNDMGVI---PV------LFEQPVHR-----D-DWSGLHDVSNFARDTYGISVVADESCRSL 316 (438)
Q Consensus 255 --N~~~s-~~~A~~~l~~L~~~~l~---~~------~iEqPl~~-----~-d~~~~a~L~~~~r~~~~iPIa~dEsl~~~ 316 (438)
.++|+ .++++++++.|++. +. +. |-+...++ . +++..+++ |+..++||.+--.+.++
T Consensus 229 ~~~~G~~~~~~~~~~~~~l~~~-~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~pvi~~G~i~~~ 303 (729)
T 1o94_A 229 YGPGQIEAEVDGQKFVEMADSL-VDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLV----KQVSKKPVLGVGRYTDP 303 (729)
T ss_dssp SCTTSCCTTTHHHHHHHHHGGG-CSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHH----HTTCSSCEECCSCCCCH
T ss_pred cCCCCCCchHHHHHHHHHHHhh-cCEEEEeeecccccccccCCccccCccccHHHHHHH----HHHCCCEEEEeCCCCCH
Confidence 25788 68899999999873 21 00 11222221 1 23333334 45789999999999999
Q ss_pred HHHHHHHHcCCccEEEe
Q 013681 317 NDVQKVMQENLASVVNI 333 (438)
Q Consensus 317 ~d~~~ll~~~a~d~i~l 333 (438)
++..++++.+.+|+|.+
T Consensus 304 ~~a~~~l~~g~aD~V~~ 320 (729)
T 1o94_A 304 EKMIEIVTKGYADIIGC 320 (729)
T ss_dssp HHHHHHHHTTSCSBEEE
T ss_pred HHHHHHHHCCCCCEEEe
Confidence 99999999998998874
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.32 Score=47.39 Aligned_cols=126 Identities=15% Similarity=0.091 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecCCC----------chHHHHHHHHHHhh--------CCCcEEEEeCCCCCCHHHHHHH
Q 013681 205 PAEASELASKYCKLGFSTLKLNVGRN----------ITADFDVLQAIHAV--------HPHCSFILDANEGYTSEEAVEV 266 (438)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKlKvG~d----------~~~di~~l~aiR~~--------~~~~~L~vDAN~~~s~~~A~~~ 266 (438)
++++.+.++... .||..+-+.++.. .+.-.+.+++||+. ++++.+.|--+..|+.++..++
T Consensus 152 ~~~~~~aa~~~~-~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~ 230 (336)
T 1f76_A 152 KDDYLICMEKIY-AYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQV 230 (336)
T ss_dssp HHHHHHHHHHHG-GGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHH
Confidence 677777776664 4999999988631 12234677888874 4577788777778999999999
Q ss_pred HHHhhhCCCCCceEec-------------CCCCC--Chhh------HHHHHHhhcccc--CCeEEEcCCCCCHHHHHHHH
Q 013681 267 LGKLNDMGVIPVLFEQ-------------PVHRD--DWSG------LHDVSNFARDTY--GISVVADESCRSLNDVQKVM 323 (438)
Q Consensus 267 l~~L~~~~l~~~~iEq-------------Pl~~~--d~~~------~a~L~~~~r~~~--~iPIa~dEsl~~~~d~~~ll 323 (438)
++.+++.++. +|.= |.... -+.+ .-.+.+.+++.. ++||.+.=-+.+..|+.+++
T Consensus 231 a~~l~~~Gvd--~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l 308 (336)
T 1f76_A 231 ADSLVRHNID--GVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKI 308 (336)
T ss_dssp HHHHHHTTCS--EEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHH
T ss_pred HHHHHHcCCc--EEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH
Confidence 9999988864 4430 11000 0111 001222223345 79999999999999999999
Q ss_pred HcCCccEEEec
Q 013681 324 QENLASVVNIK 334 (438)
Q Consensus 324 ~~~a~d~i~lk 334 (438)
+.+ +|.|++=
T Consensus 309 ~~G-Ad~V~ig 318 (336)
T 1f76_A 309 AAG-ASLVQIY 318 (336)
T ss_dssp HHT-CSEEEES
T ss_pred HCC-CCEEEee
Confidence 987 8998874
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.89 Score=43.67 Aligned_cols=105 Identities=17% Similarity=0.094 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhh--CCCcEE--EEeCC-CCCCH
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV--HPHCSF--ILDAN-EGYTS 260 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~--~~~~~L--~vDAN-~~~s~ 260 (438)
.++++...+-++++.+.|...+||--+. +.++-+++|+++++. .+++.+ |-|+. .....
T Consensus 90 yg~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~ 169 (295)
T 1s2w_A 90 YGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGL 169 (295)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccH
Confidence 4577777888899999999999997542 223448889999885 456544 68887 66779
Q ss_pred HHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc
Q 013681 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d 310 (438)
++|++.++++.+.|....|+|-+++ +.+..+++++.+ ..++|+..-
T Consensus 170 ~~ai~Ra~ay~eAGAd~i~~e~~~~--~~~~~~~i~~~~--~~~~P~i~~ 215 (295)
T 1s2w_A 170 DEALKRAEAYRNAGADAILMHSKKA--DPSDIEAFMKAW--NNQGPVVIV 215 (295)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCSS--SSHHHHHHHHHH--TTCSCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC--CHHHHHHHHHHc--CCCCCEEEe
Confidence 9999999999998866569996565 346778888743 123787653
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.54 Score=47.49 Aligned_cols=117 Identities=15% Similarity=0.245 Sum_probs=79.4
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cc-hH----HHHHHHHHHh-h----CCCcE--EEEeC-
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NI-TA----DFDVLQAIHA-V----HPHCS--FILDA- 254 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~-~~----di~~l~aiR~-~----~~~~~--L~vDA- 254 (438)
.+.++..++.||..|-|..+. ++ +. -++.+++||+ + ++++. +|+-+
T Consensus 173 ~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~ 252 (419)
T 3l5a_A 173 RDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPE 252 (419)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSC
T ss_pred HHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccc
Confidence 445667778999999999862 13 32 2557788888 4 45543 44443
Q ss_pred ---CC--CCCHHHHHHHHHHhhh-CCCCCceEe------------cCCC-C-CChhhHHHHHHhhcccc--CCeEEEcCC
Q 013681 255 ---NE--GYTSEEAVEVLGKLND-MGVIPVLFE------------QPVH-R-DDWSGLHDVSNFARDTY--GISVVADES 312 (438)
Q Consensus 255 ---N~--~~s~~~A~~~l~~L~~-~~l~~~~iE------------qPl~-~-~d~~~~a~L~~~~r~~~--~iPIa~dEs 312 (438)
++ +|+.++++++++.|++ .++. +|+ +|.. . .+++..+.+++ .. .+||.+.=.
T Consensus 253 ~~~~~~~G~~~ed~~~la~~L~~~~Gvd--~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~----~v~~~iPVI~~Gg 326 (419)
T 3l5a_A 253 ETRGSDLGYTIDEFNQLIDWVMDVSNIQ--YLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYE----HLAGRIPLIASGG 326 (419)
T ss_dssp EEETTEEEECHHHHHHHHHHHHHHSCCC--CEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHH----HHTTSSCEEECSS
T ss_pred cccCCCCCCCHHHHHHHHHHHHhhcCCc--EEEEeeCCccccccccCCCCccccHHHHHHHHH----HcCCCCeEEEECC
Confidence 23 8999999999999999 7764 443 1111 1 12333444543 34 599988888
Q ss_pred CCCHHHHHHHHHcCCccEEEe
Q 013681 313 CRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 313 l~~~~d~~~ll~~~a~d~i~l 333 (438)
+.++++.+++++. +|.|.+
T Consensus 327 I~t~e~Ae~~L~~--aDlVai 345 (419)
T 3l5a_A 327 INSPESALDALQH--ADMVGM 345 (419)
T ss_dssp CCSHHHHHHHGGG--CSEEEE
T ss_pred CCCHHHHHHHHHh--CCcHHH
Confidence 9999999999987 888765
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.64 Score=44.73 Aligned_cols=126 Identities=11% Similarity=0.060 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCC--------------CchHHHHHHHHHHhh--CCCcEE--EEeCCCCCCHHHH
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAV--HPHCSF--ILDANEGYTSEEA 263 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~--------------d~~~di~~l~aiR~~--~~~~~L--~vDAN~~~s~~~A 263 (438)
.++++...+-++.+.+.|-..+||--+. +.++=+++|++.++. ++++.| |.|+......++|
T Consensus 94 yg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldea 173 (298)
T 3eoo_A 94 WGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAA 173 (298)
T ss_dssp SSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHH
Confidence 3588888888899999999999996431 345558889888874 466544 7999876678999
Q ss_pred HHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc--CC----CCCHHHHHHHHHcCCccEEEecCCc
Q 013681 264 VEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD--ES----CRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d--Es----l~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
++.+++..+.|....|+|-+- +.++++++++ ..++|+... |. ..+. .++-+. .+..+..-++.
T Consensus 174 i~Ra~ay~~AGAD~if~~~~~---~~ee~~~~~~----~~~~Pl~~n~~~~g~tp~~~~---~eL~~l-Gv~~v~~~~~~ 242 (298)
T 3eoo_A 174 IERAIAYVEAGADMIFPEAMK---TLDDYRRFKE----AVKVPILANLTEFGSTPLFTL---DELKGA-NVDIALYCCGA 242 (298)
T ss_dssp HHHHHHHHHTTCSEEEECCCC---SHHHHHHHHH----HHCSCBEEECCTTSSSCCCCH---HHHHHT-TCCEEEECSHH
T ss_pred HHHHHhhHhcCCCEEEeCCCC---CHHHHHHHHH----HcCCCeEEEeccCCCCCCCCH---HHHHHc-CCeEEEEchHH
Confidence 999999999876556998873 6788899987 356777442 21 2233 344443 46666665544
Q ss_pred c
Q 013681 338 F 338 (438)
Q Consensus 338 ~ 338 (438)
.
T Consensus 243 ~ 243 (298)
T 3eoo_A 243 Y 243 (298)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=93.29 E-value=2.4 Score=40.77 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=101.7
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEecCC--------------CchHHHHHHHHHHhh----CCCcEE--
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAV----HPHCSF-- 250 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~--------------d~~~di~~l~aiR~~----~~~~~L-- 250 (438)
.+|+..-. +.++++.+.+.++.+.+.|-..+||--.. +.++=+++|++.++. ++++-|
T Consensus 80 ~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~A 159 (302)
T 3fa4_A 80 STPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIA 159 (302)
T ss_dssp TSCEEEECTTTTSSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 44544333 23578878888899999999999985321 456667888888763 577554
Q ss_pred EEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc--CC----CCCHHHHHHHHH
Q 013681 251 ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD--ES----CRSLNDVQKVMQ 324 (438)
Q Consensus 251 ~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d--Es----l~~~~d~~~ll~ 324 (438)
|.|+......++|++.+++..+.+-...|+|-+- +.++++++++.+ .++|+... |. ..+..++. +
T Consensus 160 RTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~~---~~~ei~~~~~~~---~~~Pl~~n~~~~g~~p~~~~~eL~---~ 230 (302)
T 3fa4_A 160 RTDSLQTHGYEESVARLRAARDAGADVGFLEGIT---SREMARQVIQDL---AGWPLLLNMVEHGATPSISAAEAK---E 230 (302)
T ss_dssp EECCHHHHCHHHHHHHHHHHHTTTCSEEEETTCC---CHHHHHHHHHHT---TTSCEEEECCTTSSSCCCCHHHHH---H
T ss_pred EecccccCCHHHHHHHHHHHHHcCCCEEeecCCC---CHHHHHHHHHHh---cCCceeEEEecCCCCCCCCHHHHH---H
Confidence 7999766789999999999998776556888764 467888888742 14666442 21 23444444 3
Q ss_pred cCCccEEEecCCcch--HHHHHHHHHHHHHcCC
Q 013681 325 ENLASVVNIKLAKFG--VLGTLQIIKATRKSGL 355 (438)
Q Consensus 325 ~~a~d~i~lk~~~~G--i~~~~~~~~~A~~~gi 355 (438)
. .+..+..-.+... +...++..+.-.+.|.
T Consensus 231 l-Gv~~v~~~~~~~raa~~A~~~~~~~i~~~g~ 262 (302)
T 3fa4_A 231 M-GFRIIIFPFAALGPAVAAMREAMEKLKRDGI 262 (302)
T ss_dssp H-TCSEEEETTTTHHHHHHHHHHHHHHHHHHSS
T ss_pred c-CCCEEEEchHHHHHHHHHHHHHHHHHHHcCC
Confidence 3 4777777766653 4455555555555554
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.13 E-value=1.8 Score=41.36 Aligned_cols=125 Identities=11% Similarity=0.105 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCC-------------CchHHHHHHHHHHhh--CCCcEE--EEeCCCCCCHHHHH
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGR-------------NITADFDVLQAIHAV--HPHCSF--ILDANEGYTSEEAV 264 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-------------d~~~di~~l~aiR~~--~~~~~L--~vDAN~~~s~~~A~ 264 (438)
.++++...+-++++.+.|...+||--+. +.++=+++|+++++. .+++.+ |-|+ .....++++
T Consensus 93 yg~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtda-a~~gl~~ai 171 (287)
T 3b8i_A 93 YGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNA-ELIDVDAVI 171 (287)
T ss_dssp SSSHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEET-TTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechh-hhcCHHHHH
Confidence 3588888888999999999999997653 345667899999885 355544 7899 777899999
Q ss_pred HHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCC-CCHHHHHHHHHcCCccEEEecC
Q 013681 265 EVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESC-RSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 265 ~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl-~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
+.++++.+.+....|+|-+ + +.+.++++++ ..++|+..=|.- ....++.++-+.+ +..+..-+
T Consensus 172 ~Ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~ii~~~g~~~~~~~~eL~~lG-v~~v~~~~ 235 (287)
T 3b8i_A 172 QRTLAYQEAGADGICLVGV-R--DFAHLEAIAE----HLHIPLMLVTYGNPQLRDDARLARLG-VRVVVNGH 235 (287)
T ss_dssp HHHHHHHHTTCSEEEEECC-C--SHHHHHHHHT----TCCSCEEEECTTCGGGCCHHHHHHTT-EEEEECCC
T ss_pred HHHHHHHHcCCCEEEecCC-C--CHHHHHHHHH----hCCCCEEEeCCCCCCCCCHHHHHHcC-CcEEEECh
Confidence 9999999988665699964 2 4677888886 577887753321 1112334444443 65555444
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=93.05 E-value=3.9 Score=37.76 Aligned_cols=141 Identities=13% Similarity=0.153 Sum_probs=96.3
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
+-..+++++.+.++.+.+.|++.+.+..-. ....+.++++++.+|++.+... .-.+.+++...++.=.+ |
T Consensus 40 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t--~~a~e~I~~l~~~~~~~~iGaG--TVlt~~~a~~Ai~AGA~------f 109 (232)
T 4e38_A 40 IAIDNAEDIIPLGKVLAENGLPAAEITFRS--DAAVEAIRLLRQAQPEMLIGAG--TILNGEQALAAKEAGAT------F 109 (232)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTCEEEEE--CCCSHHHHHHHHHHTCS------E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHhCCCCEEeEC--CcCCHHHHHHHHHcCCC------E
Confidence 345688899999999999999999997754 2346778888888887655544 46787776665554332 5
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-ch-HHHHHHHHHHHHHc-CCe
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKS-GLH 356 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~G-i~~~~~~~~~A~~~-gi~ 356 (438)
|=-|- .+ .+..+.|+ +.++|+..| +.++.++.+.++.+ +|++-+=|.. .| +.-.+ ++.... +++
T Consensus 110 IvsP~--~~-~~vi~~~~----~~gi~~ipG--v~TptEi~~A~~~G-ad~vK~FPa~~~gG~~~lk---al~~p~p~ip 176 (232)
T 4e38_A 110 VVSPG--FN-PNTVRACQ----EIGIDIVPG--VNNPSTVEAALEMG-LTTLKFFPAEASGGISMVK---SLVGPYGDIR 176 (232)
T ss_dssp EECSS--CC-HHHHHHHH----HHTCEEECE--ECSHHHHHHHHHTT-CCEEEECSTTTTTHHHHHH---HHHTTCTTCE
T ss_pred EEeCC--CC-HHHHHHHH----HcCCCEEcC--CCCHHHHHHHHHcC-CCEEEECcCccccCHHHHH---HHHHHhcCCC
Confidence 54443 23 33444443 468999887 66999999999875 8999887753 33 43322 233333 789
Q ss_pred EEEccCC
Q 013681 357 LMIDGMI 363 (438)
Q Consensus 357 ~~~~s~~ 363 (438)
+++.+-+
T Consensus 177 ~~ptGGI 183 (232)
T 4e38_A 177 LMPTGGI 183 (232)
T ss_dssp EEEBSSC
T ss_pred eeeEcCC
Confidence 9987654
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.29 Score=47.94 Aligned_cols=95 Identities=16% Similarity=0.244 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHhhhCCCCCceEecCCCCC-ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVLFEQPVHRD-DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~-d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
-+.+..++.+++|.+.+-. .+--.++.. +-+.+..++ +++++||.+|-.+ +..-+...++.+ +|.+.+.|.
T Consensus 43 ~D~~atv~Qi~~l~~aG~d--iVRvavp~~~~a~al~~I~----~~~~vPlvaDiHf-~~~lal~a~e~G-~dklRINPG 114 (366)
T 3noy_A 43 HDVEATLNQIKRLYEAGCE--IVRVAVPHKEDVEALEEIV----KKSPMPVIADIHF-APSYAFLSMEKG-VHGIRINPG 114 (366)
T ss_dssp TCHHHHHHHHHHHHHTTCC--EEEEECCSHHHHHHHHHHH----HHCSSCEEEECCS-CHHHHHHHHHTT-CSEEEECHH
T ss_pred cCHHHHHHHHHHHHHcCCC--EEEeCCCChHHHHHHHHHH----hcCCCCEEEeCCC-CHHHHHHHHHhC-CCeEEECCc
Confidence 3567777777888777753 566666541 223334444 4789999999775 455566677653 888999999
Q ss_pred cch-HHHHHHHHHHHHHcCCeEEEc
Q 013681 337 KFG-VLGTLQIIKATRKSGLHLMID 360 (438)
Q Consensus 337 ~~G-i~~~~~~~~~A~~~gi~~~~~ 360 (438)
.+| -....++++.|+++|+++-++
T Consensus 115 Nig~~~~~~~vv~~ak~~~~piRIG 139 (366)
T 3noy_A 115 NIGKEEIVREIVEEAKRRGVAVRIG 139 (366)
T ss_dssp HHSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccCchhHHHHHHHHHHHcCCCEEEe
Confidence 998 778899999999999999986
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=92.63 E-value=3.7 Score=39.53 Aligned_cols=152 Identities=13% Similarity=0.072 Sum_probs=98.5
Q ss_pred eeeeeeeC--CCCHHHHHHHHHHHhhcCCcEEEEecCC--------------CchHHHHHHHHHHhh----CCCcEE--E
Q 013681 194 LSTAITIP--AVSPAEASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAV----HPHCSF--I 251 (438)
Q Consensus 194 ip~~~~i~--~~~~~~~~~~~~~~~~~Gf~~iKlKvG~--------------d~~~di~~l~aiR~~----~~~~~L--~ 251 (438)
+|+..-.+ .++++...+-++.+.+.|-..+||--+. +.++=+++|++.++. ++++.| |
T Consensus 89 ~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~AR 168 (307)
T 3lye_A 89 PPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIAR 168 (307)
T ss_dssp CCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 55444332 3478888888899999999999985431 345556788888762 567555 7
Q ss_pred EeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE--cCC----CCCHHHHHHHHHc
Q 013681 252 LDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA--DES----CRSLNDVQKVMQE 325 (438)
Q Consensus 252 vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~--dEs----l~~~~d~~~ll~~ 325 (438)
.|+......++|++.+++..+.+....|+|-+- +.+.++++++.+. ++|+.. -|. ..+..++. +.
T Consensus 169 TDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~~---~~~~~~~i~~~~~---~~Pv~~n~~~~g~~p~~t~~eL~---~l 239 (307)
T 3lye_A 169 TDALQSLGYEECIERLRAARDEGADVGLLEGFR---SKEQAAAAVAALA---PWPLLLNSVENGHSPLITVEEAK---AM 239 (307)
T ss_dssp ECCHHHHCHHHHHHHHHHHHHTTCSEEEECCCS---CHHHHHHHHHHHT---TSCBEEEEETTSSSCCCCHHHHH---HH
T ss_pred chhhhccCHHHHHHHHHHHHHCCCCEEEecCCC---CHHHHHHHHHHcc---CCceeEEeecCCCCCCCCHHHHH---Hc
Confidence 998766679999999999988876556998653 5678888887431 366643 221 34444444 33
Q ss_pred CCccEEEecCCcch--HHHHHHHHHHHHHcCC
Q 013681 326 NLASVVNIKLAKFG--VLGTLQIIKATRKSGL 355 (438)
Q Consensus 326 ~a~d~i~lk~~~~G--i~~~~~~~~~A~~~gi 355 (438)
.+..+..-.+... ....++..+.-.+.|-
T Consensus 240 -Gv~~v~~~~~~~raa~~a~~~~~~~l~~~g~ 270 (307)
T 3lye_A 240 -GFRIMIFSFATLAPAYAAIRETLVRLRDHGV 270 (307)
T ss_dssp -TCSEEEEETTTHHHHHHHHHHHHHHHHHHSC
T ss_pred -CCeEEEEChHHHHHHHHHHHHHHHHHHHhCC
Confidence 4677766655543 4444555544444443
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=92.37 E-value=2.1 Score=41.44 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=91.9
Q ss_pred ceeeeeeeC--CCCHHHHHHHHHHHhhcCCcEEEEecCC--------------CchHHHHHHHHHHhhC--CCcEE--EE
Q 013681 193 SLSTAITIP--AVSPAEASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAVH--PHCSF--IL 252 (438)
Q Consensus 193 ~ip~~~~i~--~~~~~~~~~~~~~~~~~Gf~~iKlKvG~--------------d~~~di~~l~aiR~~~--~~~~L--~v 252 (438)
.+|+-.-.+ .++++...+-++++.+.|...+||.-+. +.++-+++|+++++.. +++.| |-
T Consensus 101 ~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARt 180 (318)
T 1zlp_A 101 NLCVVVDGDTGGGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVART 180 (318)
T ss_dssp SSEEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEE
T ss_pred CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEee
Confidence 456544433 3488888888999999999999996542 2345667899998853 55444 67
Q ss_pred eCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc--C----CCCCHHHHHHHHHcC
Q 013681 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD--E----SCRSLNDVQKVMQEN 326 (438)
Q Consensus 253 DAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d--E----sl~~~~d~~~ll~~~ 326 (438)
|+......+++++.++++.+.|....|+|-+ + +.+.++++++ ..++|+... | ...+. .++-+.+
T Consensus 181 da~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~-~--~~e~~~~i~~----~l~~P~lan~~~~g~~~~~~~---~eL~~lG 250 (318)
T 1zlp_A 181 DARAPHGLEEGIRRANLYKEAGADATFVEAP-A--NVDELKEVSA----KTKGLRIANMIEGGKTPLHTP---EEFKEMG 250 (318)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTTCSEEEECCC-C--SHHHHHHHHH----HSCSEEEEEECTTSSSCCCCH---HHHHHHT
T ss_pred HHhhhcCHHHHHHHHHHHHHcCCCEEEEcCC-C--CHHHHHHHHH----hcCCCEEEEeccCCCCCCCCH---HHHHHcC
Confidence 8775555689999999999988665699975 2 5678888887 567998532 2 12333 3444443
Q ss_pred CccEEEecCCcc
Q 013681 327 LASVVNIKLAKF 338 (438)
Q Consensus 327 a~d~i~lk~~~~ 338 (438)
+..+..-+...
T Consensus 251 -v~~v~~~~~~~ 261 (318)
T 1zlp_A 251 -FHLIAHSLTAV 261 (318)
T ss_dssp -CCEEEECSHHH
T ss_pred -CeEEEEchHHH
Confidence 66666655443
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=92.15 E-value=2.1 Score=42.01 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=88.0
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCc-EEEEecCC-----------CchHHHHHHHHHHhhC--C-CcEEEEeCCCC
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFS-TLKLNVGR-----------NITADFDVLQAIHAVH--P-HCSFILDANEG 257 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~-~iKlKvG~-----------d~~~di~~l~aiR~~~--~-~~~L~vDAN~~ 257 (438)
..|+..++...+++++.+.++.+.+.||. .|-+.++- +++.-.+.++++|+.. | -++|+.|
T Consensus 128 ~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~---- 203 (345)
T 3oix_A 128 SKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPY---- 203 (345)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC----
T ss_pred CCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCC----
Confidence 34666677777899999888888778998 89999872 2344455677777743 3 3555554
Q ss_pred CCHHHHHHHHHHhhhCCCCCce------------Ee--cCCC---------------CCChhhHHHHHHhhcccc--CCe
Q 013681 258 YTSEEAVEVLGKLNDMGVIPVL------------FE--QPVH---------------RDDWSGLHDVSNFARDTY--GIS 306 (438)
Q Consensus 258 ~s~~~A~~~l~~L~~~~l~~~~------------iE--qPl~---------------~~d~~~~a~L~~~~r~~~--~iP 306 (438)
++..+..+.++.+...++. . |. .|.- +-.++..++++ +.. .+|
T Consensus 204 ~~~~~~a~~~~~aga~~i~--~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~----~~~~~~ip 277 (345)
T 3oix_A 204 FDIVHFDQAAAIFNXYPLT--FVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFY----KRLNPSIQ 277 (345)
T ss_dssp CCHHHHHHHHHHHTTSCCS--EEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHH----TTSCTTSE
T ss_pred CCHHHHHHHHHHhCCCceE--EEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHH----HHcCCCCc
Confidence 5777767777766555442 1 22 2211 00123333443 455 699
Q ss_pred EEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 307 VVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 307 Ia~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
|...=-+.+.+|+.+.+..+ +|.|++=-.
T Consensus 278 IIg~GGI~s~~da~~~l~aG-Ad~V~igra 306 (345)
T 3oix_A 278 IIGTGGVXTGRDAFEHILCG-ASMVQIGTA 306 (345)
T ss_dssp EEEESSCCSHHHHHHHHHHT-CSEEEESHH
T ss_pred EEEECCCCChHHHHHHHHhC-CCEEEEChH
Confidence 99999999999999999876 788887544
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=3 Score=39.68 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=81.6
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhh-cCCcEEEEecCC------------CchHHHHHHHHHHhh-CCCcEEEEeCCCCCC
Q 013681 194 LSTAITIPAVSPAEASELASKYCK-LGFSTLKLNVGR------------NITADFDVLQAIHAV-HPHCSFILDANEGYT 259 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~-~Gf~~iKlKvG~------------d~~~di~~l~aiR~~-~~~~~L~vDAN~~~s 259 (438)
.|+..++...++++..+.++.+.+ .||..+.+.++. +.+.-.+.++++|+. .--+-+.+-. .++
T Consensus 99 ~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~--~~~ 176 (311)
T 1ep3_A 99 LPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSP--NVT 176 (311)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECS--CSS
T ss_pred CcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECC--ChH
Confidence 344556666678888887877766 899999998762 223336778888885 3223333322 222
Q ss_pred HHHHHHHHHHhhhCCCCCceEec----------CCCC--------------CChhhHHHHHHhhccccCCeEEEcCCCCC
Q 013681 260 SEEAVEVLGKLNDMGVIPVLFEQ----------PVHR--------------DDWSGLHDVSNFARDTYGISVVADESCRS 315 (438)
Q Consensus 260 ~~~A~~~l~~L~~~~l~~~~iEq----------Pl~~--------------~d~~~~a~L~~~~r~~~~iPIa~dEsl~~ 315 (438)
+..++++.+++.++. +|-= +-.. ..+....++.+.+++.+.+||...=-+.+
T Consensus 177 --~~~~~a~~l~~~G~d--~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~ 252 (311)
T 1ep3_A 177 --DIVPIAKAVEAAGAD--GLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVAN 252 (311)
T ss_dssp --CSHHHHHHHHHTTCS--EEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCS
T ss_pred --HHHHHHHHHHHcCCC--EEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCC
Confidence 234556666666653 3321 1000 00100012222233467899999989999
Q ss_pred HHHHHHHHHcCCccEEEecCC
Q 013681 316 LNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 316 ~~d~~~ll~~~a~d~i~lk~~ 336 (438)
.+++.++++.+ +|.+++=-.
T Consensus 253 ~~d~~~~l~~G-Ad~V~vg~~ 272 (311)
T 1ep3_A 253 AQDVLEMYMAG-ASAVAVGTA 272 (311)
T ss_dssp HHHHHHHHHHT-CSEEEECTH
T ss_pred HHHHHHHHHcC-CCEEEECHH
Confidence 99999999887 888887543
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=92.11 E-value=3.4 Score=39.13 Aligned_cols=140 Identities=9% Similarity=0.091 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC--------CchHHHHHHHHHHhh----CCCcEE--EEeCCCC---C----CHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAV----HPHCSF--ILDANEG---Y----TSEE 262 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~--------d~~~di~~l~aiR~~----~~~~~L--~vDAN~~---~----s~~~ 262 (438)
+++...+-++++.+.|...+||.-+. +.++=+++|+++++. +.++.+ |-|+... . ..++
T Consensus 90 ~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ 169 (275)
T 2ze3_A 90 APEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAE 169 (275)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHH
Confidence 78888888999999999999998653 456677889988875 666554 5677432 1 4789
Q ss_pred HHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc--CCCCCHHHHHHHHHcCCccEEEecCCcch-
Q 013681 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD--ESCRSLNDVQKVMQENLASVVNIKLAKFG- 339 (438)
Q Consensus 263 A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d--Esl~~~~d~~~ll~~~a~d~i~lk~~~~G- 339 (438)
+++.++++.+.+....|+|-+ + +.+.++++++ ..++|+..- ....+. .++-+. .+..+..-++..-
T Consensus 170 ai~Ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~n~~~~~~~~~~---~eL~~l-Gv~~v~~~~~~~ra 238 (275)
T 2ze3_A 170 TVRRGQAYADAGADGIFVPLA-L--QSQDIRALAD----ALRVPLNVMAFPGSPVP---RALLDA-GAARVSFGQSLMLA 238 (275)
T ss_dssp HHHHHHHHHHTTCSEEECTTC-C--CHHHHHHHHH----HCSSCEEEECCTTSCCH---HHHHHT-TCSEEECTTHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCC-C--CHHHHHHHHH----hcCCCEEEecCCCCCCH---HHHHHc-CCcEEEEChHHHHH
Confidence 999999999987655688885 2 4678888887 466777443 334444 444444 4777666554332
Q ss_pred -HHHHHHHHHHHHHcC
Q 013681 340 -VLGTLQIIKATRKSG 354 (438)
Q Consensus 340 -i~~~~~~~~~A~~~g 354 (438)
.....+.++.-.+.|
T Consensus 239 a~~a~~~~~~~i~~~g 254 (275)
T 2ze3_A 239 TLGLVQRMAAELHAAE 254 (275)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 333344444334433
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=91.67 E-value=6.3 Score=34.91 Aligned_cols=143 Identities=11% Similarity=0.097 Sum_probs=90.9
Q ss_pred eeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhC-CCcEEEEeCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 198 ITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVH-PHCSFILDANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 198 ~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~-~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
..+...+++++.+.++.+.+.|+..+.+..+.+ .-.+.++.+|+.. ++..+.++. ..+++++.+..+ .+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~~ig~~~--v~~~~~~~~a~~----~Gad 85 (205)
T 1wa3_A 14 AVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGAIIGAGT--VTSVEQCRKAVE----SGAE 85 (205)
T ss_dssp EEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTCEEEEES--CCSHHHHHHHHH----HTCS
T ss_pred EEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCcEEEecc--cCCHHHHHHHHH----cCCC
Confidence 445556888888889999899999998877652 2234578888864 467777653 457777654443 3432
Q ss_pred CceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc-hHHHHHHHHHHHHHc-C
Q 013681 277 PVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKS-G 354 (438)
Q Consensus 277 ~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~-Gi~~~~~~~~~A~~~-g 354 (438)
++=-|.. ...+.+.++ +.++|+..+ +.+..+..+.++.+ +|++.+.+... |+.. +.++.+.. +
T Consensus 86 --~iv~~~~---~~~~~~~~~----~~g~~vi~g--~~t~~e~~~a~~~G-ad~vk~~~~~~~g~~~---~~~l~~~~~~ 150 (205)
T 1wa3_A 86 --FIVSPHL---DEEISQFCK----EKGVFYMPG--VMTPTELVKAMKLG-HTILKLFPGEVVGPQF---VKAMKGPFPN 150 (205)
T ss_dssp --EEECSSC---CHHHHHHHH----HHTCEEECE--ECSHHHHHHHHHTT-CCEEEETTHHHHHHHH---HHHHHTTCTT
T ss_pred --EEEcCCC---CHHHHHHHH----HcCCcEECC--cCCHHHHHHHHHcC-CCEEEEcCccccCHHH---HHHHHHhCCC
Confidence 5622332 233444443 478998873 45788888888765 88887776322 3332 33344445 7
Q ss_pred CeEEEccCC
Q 013681 355 LHLMIDGMI 363 (438)
Q Consensus 355 i~~~~~s~~ 363 (438)
++++..+-.
T Consensus 151 ~pvia~GGI 159 (205)
T 1wa3_A 151 VKFVPTGGV 159 (205)
T ss_dssp CEEEEBSSC
T ss_pred CcEEEcCCC
Confidence 888877644
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=1.7 Score=42.75 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=86.6
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHh---hcCCcEEEEecCC-----------CchHHHHHHHHHHhhC--C-CcEEEEeCCC
Q 013681 194 LSTAITIPAVSPAEASELASKYC---KLGFSTLKLNVGR-----------NITADFDVLQAIHAVH--P-HCSFILDANE 256 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~---~~Gf~~iKlKvG~-----------d~~~di~~l~aiR~~~--~-~~~L~vDAN~ 256 (438)
.|+..++...+++++.+.++++. +.|+..|-+.++- +++.-.+.++++|+.. | -++|+.|
T Consensus 127 ~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~--- 203 (354)
T 4ef8_A 127 KPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPY--- 203 (354)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCC---
T ss_pred CcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecCC---
Confidence 56666766678888877777765 5789999999971 2344455678888753 3 3555554
Q ss_pred CCCHHHHHHHHHHhhhCC-CCCceE----------------ecCC---------------CCCChhhHHHHHHhhcccc-
Q 013681 257 GYTSEEAVEVLGKLNDMG-VIPVLF----------------EQPV---------------HRDDWSGLHDVSNFARDTY- 303 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~-l~~~~i----------------EqPl---------------~~~d~~~~a~L~~~~r~~~- 303 (438)
|+.++..+.++.+.+.+ +. .| +.|. ++-+++..+++++ ..
T Consensus 204 -~d~~~~~~~a~~~~~~Gg~d--~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~----~~~ 276 (354)
T 4ef8_A 204 -FDFAHFDAAAEILNEFPKVQ--FITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYR----RCP 276 (354)
T ss_dssp -CSHHHHHHHHHHHHTCTTEE--EEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHH----HCT
T ss_pred -CCHHHHHHHHHHHHhCCCcc--EEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHH----hCC
Confidence 67777777777777765 31 11 1121 1112444455553 34
Q ss_pred CCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 304 GISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 304 ~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
.+||...=-+.+.+|+.+.+..+ +|.|++=
T Consensus 277 ~ipII~~GGI~s~~da~~~l~aG-Ad~V~vg 306 (354)
T 4ef8_A 277 GKLIFGCGGVYTGEDAFLHVLAG-ASMVQVG 306 (354)
T ss_dssp TSEEEEESCCCSHHHHHHHHHHT-EEEEEEC
T ss_pred CCCEEEECCcCCHHHHHHHHHcC-CCEEEEh
Confidence 69999998999999999999876 7888864
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=91.18 E-value=0.39 Score=50.34 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=99.8
Q ss_pred eeeeeeeCCCCHHH-------HHHHHHHHhhcCCcEEEEecCCCchH-------------HHHHHHHHHhhCC--CcEEE
Q 013681 194 LSTAITIPAVSPAE-------ASELASKYCKLGFSTLKLNVGRNITA-------------DFDVLQAIHAVHP--HCSFI 251 (438)
Q Consensus 194 ip~~~~i~~~~~~~-------~~~~~~~~~~~Gf~~iKlKvG~d~~~-------------di~~l~aiR~~~~--~~~L~ 251 (438)
+|+-...++.+.++ +.+.++++.+.|.. |+-+|...-. +-+.++.+.+.++ .+.+.
T Consensus 328 ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad--~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~ 405 (555)
T 1jvn_A 328 VPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGAD--KVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVIS 405 (555)
T ss_dssp SCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCS--EEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEE
T ss_pred CcEEEeCccccchhcccccchHHHHHHHHHHcCCC--EEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEE
Confidence 44444444555433 45667788889966 4445532222 3467888888654 47889
Q ss_pred EeCC-----------------------C-----------CCCH---HHHHHHHHHhhhCCCCCceEecCC------CCCC
Q 013681 252 LDAN-----------------------E-----------GYTS---EEAVEVLGKLNDMGVIPVLFEQPV------HRDD 288 (438)
Q Consensus 252 vDAN-----------------------~-----------~~s~---~~A~~~l~~L~~~~l~~~~iEqPl------~~~d 288 (438)
+|+. + +|+. -++.++++++++++.. ..+=..+ .--|
T Consensus 406 iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~-~il~t~~~~dG~~~G~d 484 (555)
T 1jvn_A 406 VDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDLGVWELTRACEALGAG-EILLNCIDKDGSNSGYD 484 (555)
T ss_dssp ECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCC-EEEECCGGGTTTCSCCC
T ss_pred EEccccccccccccccccccccccCCCCCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCC-EEEEeCCCCCCCCCCCC
Confidence 9982 3 3432 2467888899888764 2332222 2236
Q ss_pred hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcc-hHHHHHHHHHHHHHcCCeE
Q 013681 289 WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 289 ~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~-Gi~~~~~~~~~A~~~gi~~ 357 (438)
++.++++++ .+++||.+-=-+.+++|+.++++...++.+++=-... |-....++.+.+++.|+++
T Consensus 485 ~~li~~l~~----~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l~~~gi~~ 550 (555)
T 1jvn_A 485 LELIEHVKD----AVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHGLKV 550 (555)
T ss_dssp HHHHHHHHH----HCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHH----hCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 888888875 5789998877889999999999844566666644333 3223455666778888865
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=90.12 E-value=1.4 Score=40.82 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhcccc-CCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTY-GISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~-~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+++++.+++++|-+-++. +||=+++..+ .+..+++++ +. .+-|..| .+.+.++++.+++.+ .+++..- .
T Consensus 44 ~~~~a~~~a~al~~gGi~--~iEvt~~t~~a~e~I~~l~~----~~~~~~iGaG-TVlt~~~a~~Ai~AG-A~fIvsP-~ 114 (232)
T 4e38_A 44 NAEDIIPLGKVLAENGLP--AAEITFRSDAAVEAIRLLRQ----AQPEMLIGAG-TILNGEQALAAKEAG-ATFVVSP-G 114 (232)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHHHH----HCTTCEEEEE-CCCSHHHHHHHHHHT-CSEEECS-S
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHH----hCCCCEEeEC-CcCCHHHHHHHHHcC-CCEEEeC-C
Confidence 568999999999999985 9999997543 445555654 33 3445555 688899999999987 6777542 2
Q ss_pred cchHHHHHHHHHHHHHcCCeEEEccCCch
Q 013681 337 KFGVLGTLQIIKATRKSGLHLMIDGMIET 365 (438)
Q Consensus 337 ~~Gi~~~~~~~~~A~~~gi~~~~~s~~es 365 (438)
+ ..++++.|+++|++++++.+.-+
T Consensus 115 ---~--~~~vi~~~~~~gi~~ipGv~Tpt 138 (232)
T 4e38_A 115 ---F--NPNTVRACQEIGIDIVPGVNNPS 138 (232)
T ss_dssp ---C--CHHHHHHHHHHTCEEECEECSHH
T ss_pred ---C--CHHHHHHHHHcCCCEEcCCCCHH
Confidence 2 25678889999999999987533
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=90.05 E-value=1.8 Score=41.53 Aligned_cols=127 Identities=14% Similarity=0.123 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC--------------CchHHHHHHHHHHhh--CCCcEE--EEeCCCCCCHHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR--------------NITADFDVLQAIHAV--HPHCSF--ILDANEGYTSEEAVE 265 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~--------------d~~~di~~l~aiR~~--~~~~~L--~vDAN~~~s~~~A~~ 265 (438)
+++.+.+-++++.+.|...+||.-+. +.++-+++|+++++. ++++.+ |-|+......+++++
T Consensus 92 ~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ 171 (295)
T 1xg4_A 92 SAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIE 171 (295)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHH
Confidence 78888888999999999999997552 234556788888875 455444 678765556799999
Q ss_pred HHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE--cCC-CCCHHHHHHHHHcCCccEEEecCCcc
Q 013681 266 VLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA--DES-CRSLNDVQKVMQENLASVVNIKLAKF 338 (438)
Q Consensus 266 ~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~--dEs-l~~~~d~~~ll~~~a~d~i~lk~~~~ 338 (438)
.++++++.|....|+|-+ + +++.++++++ ..++|+.. .|. ........++-+. .++.+..-++..
T Consensus 172 ra~ay~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~iP~~~N~~~~g~~p~~~~~eL~~~-G~~~v~~~~~~~ 239 (295)
T 1xg4_A 172 RAQAYVEAGAEMLFPEAI-T--ELAMYRQFAD----AVQVPILANITEFGATPLFTTDELRSA-HVAMALYPLSAF 239 (295)
T ss_dssp HHHHHHHTTCSEEEETTC-C--SHHHHHHHHH----HHCSCBEEECCSSSSSCCCCHHHHHHT-TCSEEEESSHHH
T ss_pred HHHHHHHcCCCEEEEeCC-C--CHHHHHHHHH----HcCCCEEEEecccCCCCCCCHHHHHHc-CCCEEEEChHHH
Confidence 999999988665689975 2 5788888987 46788743 331 1111223444444 477777655433
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.38 E-value=12 Score=34.01 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=91.1
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
+-..++++..+.++.+++.|.+.+.+..-. ....+.++.+++.++++.+..+. -.+.+++...++.=.+ +
T Consensus 32 ~r~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~~~igagt--vl~~d~~~~A~~aGAd------~ 101 (225)
T 1mxs_A 32 ITIAREEDILPLADALAAGGIRTLEVTLRS--QHGLKAIQVLREQRPELCVGAGT--VLDRSMFAAVEAAGAQ------F 101 (225)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEESSS--THHHHHHHHHHHHCTTSEEEEEC--CCSHHHHHHHHHHTCS------S
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHhCcccEEeeCe--EeeHHHHHHHHHCCCC------E
Confidence 334577888888999999999999998643 34456788888888887666664 5677665444433222 2
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchHH-HHHHHHHHHHHc-CCeE
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKS-GLHL 357 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi~-~~~~~~~~A~~~-gi~~ 357 (438)
+=-| ..| ....+.++ +.++|+..+ +.++.++.++++.+ +||+.+=|.. .. +..-+-++.... ++++
T Consensus 102 v~~p--~~d-~~v~~~~~----~~g~~~i~G--~~t~~e~~~A~~~G-ad~vk~FPa~--~~~G~~~lk~i~~~~~~ipv 169 (225)
T 1mxs_A 102 VVTP--GIT-EDILEAGV----DSEIPLLPG--ISTPSEIMMGYALG-YRRFKLFPAE--ISGGVAAIKAFGGPFGDIRF 169 (225)
T ss_dssp EECS--SCC-HHHHHHHH----HCSSCEECE--ECSHHHHHHHHTTT-CCEEEETTHH--HHTHHHHHHHHHTTTTTCEE
T ss_pred EEeC--CCC-HHHHHHHH----HhCCCEEEe--eCCHHHHHHHHHCC-CCEEEEccCc--cccCHHHHHHHHhhCCCCeE
Confidence 3223 333 34444443 477888776 78899998888764 8999885521 11 222233344455 7999
Q ss_pred EEccCC
Q 013681 358 MIDGMI 363 (438)
Q Consensus 358 ~~~s~~ 363 (438)
+..+-+
T Consensus 170 vaiGGI 175 (225)
T 1mxs_A 170 CPTGGV 175 (225)
T ss_dssp EEBSSC
T ss_pred EEECCC
Confidence 877644
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=89.28 E-value=1.6 Score=41.56 Aligned_cols=93 Identities=12% Similarity=0.182 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEecCC--C-------CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFEQPV--H-------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iEqPl--~-------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
.++.++.++++++|++.++. .||.=. . .++++.++.++ +..++|++.- +.+..+++++++.+
T Consensus 22 ~~~~e~k~~i~~~L~~~Gv~--~IE~g~~~~~~~~p~~~~~~e~~~~i~----~~~~~~v~~l--~~n~~~i~~a~~~G- 92 (295)
T 1ydn_A 22 FVPTADKIALINRLSDCGYA--RIEATSFVSPKWVPQLADSREVMAGIR----RADGVRYSVL--VPNMKGYEAAAAAH- 92 (295)
T ss_dssp CCCHHHHHHHHHHHTTTTCS--EEEEEECSCTTTCGGGTTHHHHHHHSC----CCSSSEEEEE--CSSHHHHHHHHHTT-
T ss_pred CcCHHHHHHHHHHHHHcCcC--EEEEccCcCccccccccCHHHHHHHHH----hCCCCEEEEE--eCCHHHHHHHHHCC-
Confidence 47899999999999999985 899833 1 13344444443 3457888432 26788999999875
Q ss_pred ccEEEec--CC--------cc---h-HHHHHHHHHHHHHcCCeEE
Q 013681 328 ASVVNIK--LA--------KF---G-VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 328 ~d~i~lk--~~--------~~---G-i~~~~~~~~~A~~~gi~~~ 358 (438)
++.|.+. .+ .. + +..+.+++++|+++|+.+.
T Consensus 93 ~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~ 137 (295)
T 1ydn_A 93 ADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIR 137 (295)
T ss_dssp CSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 6777776 33 22 4 6677888999999999986
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=89.23 E-value=8.9 Score=36.54 Aligned_cols=131 Identities=11% Similarity=0.032 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhC--CCcEE--EEeCC-CCCCH
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVH--PHCSF--ILDAN-EGYTS 260 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~--~~~~L--~vDAN-~~~s~ 260 (438)
.++++...+-++++.+.|...+||--+. +.++=+++|+++++.. +++.+ |-|+. .....
T Consensus 86 yg~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~ 165 (290)
T 2hjp_A 86 FGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQ 165 (290)
T ss_dssp TSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccH
Confidence 3588888888999999999999997542 1224477899888853 45444 78887 66779
Q ss_pred HHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC
Q 013681 261 EEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
+++++.++++.+.+....|+|--++ +.+.++++++.+ ..++|+...=.....-++.++-+.+.+..+..-+.
T Consensus 166 ~~ai~Ra~ay~eAGAd~i~~e~~~~--~~~~~~~i~~~~--~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~~ 237 (290)
T 2hjp_A 166 QEAVRRGQAYEEAGADAILIHSRQK--TPDEILAFVKSW--PGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNH 237 (290)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCS--SSHHHHHHHHHC--CCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSH
T ss_pred HHHHHHHHHHHHcCCcEEEeCCCCC--CHHHHHHHHHHc--CCCCCEEEeccCCCCCCHHHHHhcCCeeEEEechH
Confidence 9999999999998765568998333 345678888732 12389875311001113344444443666655543
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=89.17 E-value=5.8 Score=38.94 Aligned_cols=119 Identities=14% Similarity=0.223 Sum_probs=75.1
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC-cEEEEeCCC----C
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILDANE----G 257 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~-~~L~vDAN~----~ 257 (438)
.+.|+..++.||..+.|+.+. +++ --++.+++||+ ++++ +-+|+-++. .
T Consensus 155 ~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~ 234 (358)
T 4a3u_A 155 EKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGT 234 (358)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTB
T ss_pred HHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCC
Confidence 455777789999999999852 111 23677899998 5655 556665542 2
Q ss_pred C---CHHHHHHHHHHhhhCCCCCceEe-------cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC
Q 013681 258 Y---TSEEAVEVLGKLNDMGVIPVLFE-------QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL 327 (438)
Q Consensus 258 ~---s~~~A~~~l~~L~~~~l~~~~iE-------qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a 327 (438)
+ +.++.+..++.+.+.++. +++ .+........++ +.+|+....||+.+- ..+++..+++|+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~a---~~ik~~~~~~v~~~g-~~~~~~ae~~l~~G~ 308 (358)
T 4a3u_A 235 VDSHPEQVFIPAAKMLSDLDIA--FLGMREGAVDGTFGKTDQPKLS---PEIRKVFKPPLVLNQ-DYTFETAQAALDSGV 308 (358)
T ss_dssp CCSSTHHHHHHHHHHHHHHTCS--EEEEECCBTTCSSSBCSSCCCH---HHHHHHCCSCEEEES-SCCHHHHHHHHHHTS
T ss_pred cccchHHHHHHHHHhhhccCcc--ccccccccccCcccccccHHHH---HHHHHhcCCcEEEeC-CCCHHHHHHHHHcCC
Confidence 2 344556777888877753 433 222222222222 222335677887764 568889999999999
Q ss_pred ccEEEe
Q 013681 328 ASVVNI 333 (438)
Q Consensus 328 ~d~i~l 333 (438)
+|+|-+
T Consensus 309 aD~V~~ 314 (358)
T 4a3u_A 309 ADAISF 314 (358)
T ss_dssp CSEEEE
T ss_pred ceEeHh
Confidence 998654
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=88.91 E-value=3.4 Score=42.31 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe----
Q 013681 207 EASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE---- 281 (438)
Q Consensus 207 ~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE---- 281 (438)
+..+.++.+++.|+..+-+.... .+...++.++++|+..|++.+.+- +..+.++|.. +.+.+.. +|-
T Consensus 237 ~~~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g--~~~t~e~a~~----l~~~G~d--~I~v~~~ 308 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAG--NVATPEGTEA----LIKAGAD--AVKVGVG 308 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEE--EECSHHHHHH----HHHTTCS--EEEECSS
T ss_pred hHHHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeC--CcCCHHHHHH----HHHcCCC--EEEEcCC
Confidence 34567888889999999986653 456788899999998777777662 4567887743 3444543 332
Q ss_pred ----------cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEe
Q 013681 282 ----------QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 282 ----------qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~l 333 (438)
......++..+..+++.+ +..++||..+=-+.+..|+.+++..+ +|.+++
T Consensus 309 ~G~~~~~~~~~~~g~p~~~~l~~v~~~~-~~~~ipvia~GGI~~~~di~kala~G-Ad~V~i 368 (494)
T 1vrd_A 309 PGSICTTRVVAGVGVPQLTAVMECSEVA-RKYDVPIIADGGIRYSGDIVKALAAG-AESVMV 368 (494)
T ss_dssp CSTTCHHHHHHCCCCCHHHHHHHHHHHH-HTTTCCEEEESCCCSHHHHHHHHHTT-CSEEEE
T ss_pred CCccccccccCCCCccHHHHHHHHHHHH-hhcCCCEEEECCcCCHHHHHHHHHcC-CCEEEE
Confidence 111112344445554422 23689999999999999999999987 788874
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=88.24 E-value=9.9 Score=34.39 Aligned_cols=109 Identities=12% Similarity=0.203 Sum_probs=73.1
Q ss_pred HHHHHhhcCCcEEEEecCCC--c--hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE------
Q 013681 211 LASKYCKLGFSTLKLNVGRN--I--TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF------ 280 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~d--~--~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i------ 280 (438)
+++.+.+.|...+-+..... . +...+.++.+|+.+++..+.++.+ +++++....+. +.. +|
T Consensus 93 ~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~---t~~ea~~a~~~----Gad--~i~~~v~g 163 (234)
T 1yxy_A 93 EVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIS---TFDEGLVAHQA----GID--FVGTTLSG 163 (234)
T ss_dssp HHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECS---SHHHHHHHHHT----TCS--EEECTTTT
T ss_pred HHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCC---CHHHHHHHHHc----CCC--EEeeeccc
Confidence 45667789999887665431 1 123578899999888888998875 56775554432 221 33
Q ss_pred -e---cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 281 -E---QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 281 -E---qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
+ ++....+++.++++++ . ++||..+=-+.+.+++.++++.+ +|.+.+=
T Consensus 164 ~~~~~~~~~~~~~~~i~~~~~----~-~ipvia~GGI~s~~~~~~~~~~G-ad~v~vG 215 (234)
T 1yxy_A 164 YTPYSRQEAGPDVALIEALCK----A-GIAVIAEGKIHSPEEAKKINDLG-VAGIVVG 215 (234)
T ss_dssp SSTTSCCSSSCCHHHHHHHHH----T-TCCEEEESCCCSHHHHHHHHTTC-CSEEEEC
T ss_pred cCCCCcCCCCCCHHHHHHHHh----C-CCCEEEECCCCCHHHHHHHHHCC-CCEEEEc
Confidence 1 1122335666777764 4 89999888888899999999876 7777653
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=87.35 E-value=17 Score=33.09 Aligned_cols=139 Identities=17% Similarity=0.157 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 013681 202 AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (438)
Q Consensus 202 ~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (438)
..++++..+.++.+++.|.+.+.+..-. ....+.++.+++.++++.+..+. -++.+++...++. +.. ++=
T Consensus 25 ~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~l~vgaGt--vl~~d~~~~A~~a----GAd--~v~ 94 (224)
T 1vhc_A 25 LDNADDILPLADTLAKNGLSVAEITFRS--EAAADAIRLLRANRPDFLIAAGT--VLTAEQVVLAKSS----GAD--FVV 94 (224)
T ss_dssp CSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTTCEEEEES--CCSHHHHHHHHHH----TCS--EEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccC--chHHHHHHHHHHhCcCcEEeeCc--EeeHHHHHHHHHC----CCC--EEE
Confidence 3577888888999999999999998643 24466888888888876665554 5666654443332 321 452
Q ss_pred cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-ch-HHHHHHHHHHHHHc-CCeEE
Q 013681 282 QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKS-GLHLM 358 (438)
Q Consensus 282 qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~G-i~~~~~~~~~A~~~-gi~~~ 358 (438)
-| ..|. ...+.++ +.++|+..| +.++.++.++.+.+ +||+.+=|.. .| +....+ +.... +++++
T Consensus 95 ~p--~~d~-~v~~~ar----~~g~~~i~G--v~t~~e~~~A~~~G-ad~vk~Fpa~~~gG~~~lk~---l~~~~~~ipvv 161 (224)
T 1vhc_A 95 TP--GLNP-KIVKLCQ----DLNFPITPG--VNNPMAIEIALEMG-ISAVKFFPAEASGGVKMIKA---LLGPYAQLQIM 161 (224)
T ss_dssp CS--SCCH-HHHHHHH----HTTCCEECE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHH---HHTTTTTCEEE
T ss_pred EC--CCCH-HHHHHHH----HhCCCEEec--cCCHHHHHHHHHCC-CCEEEEeeCccccCHHHHHH---HHhhCCCCeEE
Confidence 23 2332 3333443 367887777 78899998888765 8999886643 33 433332 33344 79998
Q ss_pred EccCC
Q 013681 359 IDGMI 363 (438)
Q Consensus 359 ~~s~~ 363 (438)
..+-+
T Consensus 162 aiGGI 166 (224)
T 1vhc_A 162 PTGGI 166 (224)
T ss_dssp EBSSC
T ss_pred EECCc
Confidence 77644
|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=87.07 E-value=12 Score=37.62 Aligned_cols=112 Identities=13% Similarity=-0.010 Sum_probs=80.1
Q ss_pred eeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEec--------C-------CCchHHHHHHHHHHhh----CCCcEE--
Q 013681 194 LSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV--------G-------RNITADFDVLQAIHAV----HPHCSF-- 250 (438)
Q Consensus 194 ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKv--------G-------~d~~~di~~l~aiR~~----~~~~~L-- 250 (438)
+|+..-+ +.+++..+.+.++.+.+.|.-.+-|.= | .+.++-+++|+++|+. +++.-|
T Consensus 153 ~PviaD~dtGfG~~~~v~~~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~IiA 232 (439)
T 3i4e_A 153 APIVADAEAGFGGVLNAFELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVLVA 232 (439)
T ss_dssp CCEEEECTTTTSSHHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCeEEECCCCCCccHHHHHHHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 6655543 334666777888999999999887742 2 1467778899999862 566444
Q ss_pred EEeCCCC----------------------------CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccc
Q 013681 251 ILDANEG----------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (438)
Q Consensus 251 ~vDAN~~----------------------------~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~ 302 (438)
|.|+..+ ...++|++.+++..+ +-...|+|-+.+ +.+.++++++.++..
T Consensus 233 RTDa~~a~l~~s~~d~~d~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-GAD~if~E~~~~--~~eei~~f~~~v~~~ 309 (439)
T 3i4e_A 233 RTDAEAADLITSDIDDNDKPYLTGERTVEGFFRTKPGLEQAISRGLAYAP-YADLIWCETGKP--DLEYAKKFAEAIHKQ 309 (439)
T ss_dssp EECTTTCCEESCCCCTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-TCSEEEECCSSC--CHHHHHHHHHHHHHH
T ss_pred EcCcccccccccccccccchhhcccCcccccccccCCHHHHHHHHHHHHh-hCCEEEecCCCC--CHHHHHHHHHHhccc
Confidence 8999653 468999999999888 655569988775 578889998866544
Q ss_pred cCCeEE
Q 013681 303 YGISVV 308 (438)
Q Consensus 303 ~~iPIa 308 (438)
.++++.
T Consensus 310 ~P~~~l 315 (439)
T 3i4e_A 310 FPGKLL 315 (439)
T ss_dssp STTCEE
T ss_pred CCceEE
Confidence 565543
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=87.04 E-value=7.1 Score=35.01 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=71.3
Q ss_pred HHHHHhhcCCcEEEEecCC--Cc-hHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceE--ecCC-
Q 013681 211 LASKYCKLGFSTLKLNVGR--NI-TADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLF--EQPV- 284 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG~--d~-~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i--EqPl- 284 (438)
+++.+.+.|...+-+.... ++ +.-.+.++.+|+.+|+..+.+|.+ +++++.+ +.+.+.. +| --+.
T Consensus 80 ~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~---t~~e~~~----~~~~G~d--~i~~~~~g~ 150 (223)
T 1y0e_A 80 EVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA---TVEEAKN----AARLGFD--YIGTTLHGY 150 (223)
T ss_dssp HHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECS---SHHHHHH----HHHTTCS--EEECTTTTS
T ss_pred HHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCC---CHHHHHH----HHHcCCC--EEEeCCCcC
Confidence 3455678898888776543 22 233567899999878888888875 6777654 3334432 33 1111
Q ss_pred ----C-----CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEec
Q 013681 285 ----H-----RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 285 ----~-----~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk 334 (438)
. ..+++.++++++ ..++||..+=-+.+.+++.++++.+ +|.+.+=
T Consensus 151 t~~~~~~~~~~~~~~~~~~~~~----~~~ipvia~GGI~~~~~~~~~~~~G-ad~v~vG 204 (223)
T 1y0e_A 151 TSYTQGQLLYQNDFQFLKDVLQ----SVDAKVIAEGNVITPDMYKRVMDLG-VHCSVVG 204 (223)
T ss_dssp STTSTTCCTTHHHHHHHHHHHH----HCCSEEEEESSCCSHHHHHHHHHTT-CSEEEEC
T ss_pred cCCCCCCCCCcccHHHHHHHHh----hCCCCEEEecCCCCHHHHHHHHHcC-CCEEEEC
Confidence 0 112334445543 4689999988888999999999986 7777763
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.86 E-value=2.3 Score=39.51 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=77.0
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCC-chH--HHHHHHHHHhh-C--C-CcEEEEeC---CC------
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRN-ITA--DFDVLQAIHAV-H--P-HCSFILDA---NE------ 256 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d-~~~--di~~l~aiR~~-~--~-~~~L~vDA---N~------ 256 (438)
.+|+-...++.+++++. ++++.|.. .+-+|.. ++. +.+.++.+.+. + . .+.+.+|+ ++
T Consensus 74 ~iPvi~~ggi~~~~~i~----~~~~~Gad--~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~ 147 (266)
T 2w6r_A 74 TLPIIASGGAGKMEHFL----EAFLAGAD--KALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFT 147 (266)
T ss_dssp CSCEEEESCCCSTHHHH----HHHHHTCS--EEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEECCCCCHHHHH----HHHHcCCc--HhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEE
Confidence 35555555566766653 33456744 4555653 323 66667666553 4 2 45678887 33
Q ss_pred -CCCH---HHHHHHHHHhhhCCCCCceEecCCC------CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 257 -GYTS---EEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 257 -~~s~---~~A~~~l~~L~~~~l~~~~iEqPl~------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
+|.. ....++++++.+.+....++ ..+. .-+++.++++++ .+++||...=-+.+.+++.++++.+
T Consensus 148 ~g~~~~~~~~~~e~~~~~~~~G~~~i~~-t~~~~~g~~~g~~~~~i~~l~~----~~~ipvia~GGI~~~ed~~~~~~~G 222 (266)
T 2w6r_A 148 HSGKKNTGILLRDWVVEVEKRGAGEILL-TSIDRDGTKSGYDTEMIRFVRP----LTTLPIIASGGAGKMEHFLEAFLAG 222 (266)
T ss_dssp TTTTEEEEEEHHHHHHHHHHTTCSEEEE-EETTTTTTCSCCCHHHHHHHGG----GCCSCEEEESCCCSHHHHHHHHHHT
T ss_pred CCCceecchhHHHHHHHHHHcCCCEEEE-EeecCCCCcCCCCHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 3421 12344555555555542233 2222 124677777764 5789999888888999999998765
Q ss_pred CccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEcc
Q 013681 327 LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG 361 (438)
Q Consensus 327 a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s 361 (438)
++.+.+=-..++ -....++.+..++.|+++-.-.
T Consensus 223 -adgv~vgsal~~~~~~~~~~~~~l~~~g~~~~~~~ 257 (266)
T 2w6r_A 223 -ADAALAASVFHFREIDMRELKEYLKKHGVNVRLEG 257 (266)
T ss_dssp -CSEEEESTTTC------------------------
T ss_pred -CHHHHccHHHHcCCCCHHHHHHHHHHCCCcccccc
Confidence 778777766664 3345666677778888765433
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=86.74 E-value=1.6 Score=40.21 Aligned_cols=154 Identities=9% Similarity=0.067 Sum_probs=89.7
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCC-cEEEEeCC---C-------CCCH
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPH-CSFILDAN---E-------GYTS 260 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~-~~L~vDAN---~-------~~s~ 260 (438)
.+|+-...++.++++ ++++++.|...+ -+|...-.+.+.+..+++ .+++ +.+.+|+. + +|..
T Consensus 74 ~ipvi~~ggI~~~~~----~~~~~~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~ 147 (253)
T 1thf_D 74 DIPFTVGGGIHDFET----ASELILRGADKV--SINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKK 147 (253)
T ss_dssp CSCEEEESSCCSHHH----HHHHHHTTCSEE--EESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTE
T ss_pred CCCEEEeCCCCCHHH----HHHHHHcCCCEE--EEChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCcc
Confidence 356555556677765 445556786644 556432333445666655 4543 56888884 3 3421
Q ss_pred ---HHHHHHHHHhhhCCCCCceEecCCC------CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 261 ---EEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 261 ---~~A~~~l~~L~~~~l~~~~iEqPl~------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
.+..++++.+.+.++....+ -.+. .-+++.++++++ .+++||..+=-+.+.+++.++++.+ ++.+
T Consensus 148 ~~~~~~~e~~~~~~~~G~~~i~~-~~~~~~g~~~g~~~~~~~~l~~----~~~ipvia~GGI~~~~d~~~~~~~G-adgv 221 (253)
T 1thf_D 148 NTGILLRDWVVEVEKRGAGEILL-TSIDRDGTKSGYDTEMIRFVRP----LTTLPIIASGGAGKMEHFLEAFLAG-ADAA 221 (253)
T ss_dssp EEEEEHHHHHHHHHHTTCSEEEE-EETTTTTSCSCCCHHHHHHHGG----GCCSCEEEESCCCSHHHHHHHHHTT-CSEE
T ss_pred ccCCCHHHHHHHHHHCCCCEEEE-EeccCCCCCCCCCHHHHHHHHH----hcCCCEEEECCCCCHHHHHHHHHcC-ChHH
Confidence 12345555566665431122 2222 125777777764 5789999988888899999999754 7777
Q ss_pred EecCCcch-HHHHHHHHHHHHHcCCeEE
Q 013681 332 NIKLAKFG-VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 332 ~lk~~~~G-i~~~~~~~~~A~~~gi~~~ 358 (438)
.+=-..++ -....+..+..++.|+++-
T Consensus 222 ~vGsal~~~~~~~~~~~~~l~~~g~~~~ 249 (253)
T 1thf_D 222 LAASVFHFREIDVRELKEYLKKHGVNVR 249 (253)
T ss_dssp EESHHHHTTCSCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHcCCccc
Confidence 65433332 1124455666677787653
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=86.16 E-value=4 Score=39.59 Aligned_cols=142 Identities=13% Similarity=0.139 Sum_probs=89.5
Q ss_pred HHHHHHHHh-hcCCcEEEEec-CC-------CchHHHHHHHHHHhhCCCcEEEEe--CCCCCCHHHHHHHHHHhhhC-CC
Q 013681 208 ASELASKYC-KLGFSTLKLNV-GR-------NITADFDVLQAIHAVHPHCSFILD--ANEGYTSEEAVEVLGKLNDM-GV 275 (438)
Q Consensus 208 ~~~~~~~~~-~~Gf~~iKlKv-G~-------d~~~di~~l~aiR~~~~~~~L~vD--AN~~~s~~~A~~~l~~L~~~-~l 275 (438)
..+.+++++ +.|-..|-+.. +. +.++..+++++|++.. ++.|.|| .|..++++-+.+-++..... ++
T Consensus 82 ~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~-~vPlsIDg~~~~T~~~eV~eaAleagag~~~l 160 (323)
T 4djd_D 82 PGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAV-GVPLVVVGCGDVEKDHEVLEAVAEAAAGENLL 160 (323)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-CSCEEEECCSCHHHHHHHHHHHHHHTTTSCCE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhC-CceEEEECCCCCCCCHHHHHHHHHhcCCCCCe
Confidence 456677777 89999988874 22 2356777888888753 7899999 56677777777777776542 22
Q ss_pred CCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHH---HHHcCCc--cEEEecCCc--ch--HHHHHHH
Q 013681 276 IPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK---VMQENLA--SVVNIKLAK--FG--VLGTLQI 346 (438)
Q Consensus 276 ~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~---ll~~~a~--d~i~lk~~~--~G--i~~~~~~ 346 (438)
+..+.. ++++.+..+++ +.+.|+.+= +..+.+-+++ .+....+ +=|++||.. +| +....+.
T Consensus 161 -INsv~~----~~~~~m~~laa----~~g~~vVlm-h~~d~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~ 230 (323)
T 4djd_D 161 -LGNAEQ----ENYKSLTAACM----VHKHNIIAR-SPLDINICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSI 230 (323)
T ss_dssp -EEEEBT----TBCHHHHHHHH----HHTCEEEEE-CSSCHHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHH
T ss_pred -EEECCc----ccHHHHHHHHH----HhCCeEEEE-ccchHHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHH
Confidence 223333 35678888876 578888772 1123333322 2333334 459999987 34 5555444
Q ss_pred HHHHH--------HcCCeEEEc
Q 013681 347 IKATR--------KSGLHLMID 360 (438)
Q Consensus 347 ~~~A~--------~~gi~~~~~ 360 (438)
.+..+ ..|.++.++
T Consensus 231 l~~ir~~al~~~~~lg~PvL~G 252 (323)
T 4djd_D 231 MERIRLGALQGDKMLSMPVICT 252 (323)
T ss_dssp HHHHHHHHHHTCGGGCSCBEEE
T ss_pred HHHHHHHhhcccccCCCCEEEe
Confidence 43333 579999886
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=85.85 E-value=7.6 Score=35.35 Aligned_cols=120 Identities=14% Similarity=0.133 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhcCCcEEEE--ecCC----CchHHHHHHHHHHhhCCCcEEEE--eCCCCCCHHHHHHHHHHhhhCCCC
Q 013681 205 PAEASELASKYCKLGFSTLKL--NVGR----NITADFDVLQAIHAVHPHCSFIL--DANEGYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 205 ~~~~~~~~~~~~~~Gf~~iKl--KvG~----d~~~di~~l~aiR~~~~~~~L~v--DAN~~~s~~~A~~~l~~L~~~~l~ 276 (438)
...-...+++..+.|+..+.+ .+|. +.+.-.+.++++++..+.+.+.+ .. +.|+.++..+.++.+.+.+..
T Consensus 69 ~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~-~~l~~~~~~~~a~~a~eaGad 147 (225)
T 1mzh_A 69 TSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVET-PYLNEEEIKKAVEICIEAGAD 147 (225)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCG-GGCCHHHHHHHHHHHHHHTCS
T ss_pred hhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeC-CCCCHHHHHHHHHHHHHhCCC
Confidence 343345566777899999995 4442 34444556888888543444444 32 458988888999999988874
Q ss_pred CceEecCCC----CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 277 PVLFEQPVH----RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 277 ~~~iEqPl~----~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
+|-=-.- ..+++..+.+++.. ..++||...=-+.+.+++.++++.+ ++.
T Consensus 148 --~I~tstg~~~gga~~~~i~~v~~~v--~~~ipVia~GGI~t~~da~~~l~aG-A~~ 200 (225)
T 1mzh_A 148 --FIKTSTGFAPRGTTLEEVRLIKSSA--KGRIKVKASGGIRDLETAISMIEAG-ADR 200 (225)
T ss_dssp --EEECCCSCSSSCCCHHHHHHHHHHH--TTSSEEEEESSCCSHHHHHHHHHTT-CSE
T ss_pred --EEEECCCCCCCCCCHHHHHHHHHHh--CCCCcEEEECCCCCHHHHHHHHHhC-chH
Confidence 7732210 11456666666421 1268987777888999999999876 553
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=85.69 E-value=20 Score=32.31 Aligned_cols=141 Identities=14% Similarity=0.095 Sum_probs=91.2
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
+...++++..+.++.+.+.|.+.+.+..-. ....+.++.+++.++++.+..+. -.+.+++...++.=.+ +
T Consensus 22 ~r~~~~~~~~~~~~al~~gGv~~iel~~k~--~~~~~~i~~l~~~~~~~~vgagt--vi~~d~~~~A~~aGAd------~ 91 (214)
T 1wbh_A 22 IVVKKLEHAVPMAKALVAGGVRVLNVTLRT--ECAVDAIRAIAKEVPEAIVGAGT--VLNPQQLAEVTEAGAQ------F 91 (214)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEESCS--TTHHHHHHHHHHHCTTSEEEEES--CCSHHHHHHHHHHTCS------C
T ss_pred EECCCHHHHHHHHHHHHHcCCCEEEEeCCC--hhHHHHHHHHHHHCcCCEEeeCE--EEEHHHHHHHHHcCCC------E
Confidence 344678888888999999999999998643 23456888888888876666653 5666665443333222 3
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-ch-HHHHHHHHHHHHHc-CCe
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKS-GLH 356 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~G-i~~~~~~~~~A~~~-gi~ 356 (438)
+=-| ..| ....+.++ +.++|+..| +.++.++.+.++.+ +||+-+=|.. .| +... .++.... +++
T Consensus 92 v~~p--~~d-~~v~~~~~----~~g~~~i~G--~~t~~e~~~A~~~G-ad~v~~Fpa~~~gG~~~l---k~i~~~~~~ip 158 (214)
T 1wbh_A 92 AISP--GLT-EPLLKAAT----EGTIPLIPG--ISTVSELMLGMDYG-LKEFKFFPAEANGGVKAL---QAIAGPFSQVR 158 (214)
T ss_dssp EEES--SCC-HHHHHHHH----HSSSCEEEE--ESSHHHHHHHHHTT-CCEEEETTTTTTTHHHHH---HHHHTTCTTCE
T ss_pred EEcC--CCC-HHHHHHHH----HhCCCEEEe--cCCHHHHHHHHHCC-CCEEEEecCccccCHHHH---HHHhhhCCCCe
Confidence 3233 233 33444443 467887776 78899998888765 8999886633 23 3332 3334445 799
Q ss_pred EEEccCC
Q 013681 357 LMIDGMI 363 (438)
Q Consensus 357 ~~~~s~~ 363 (438)
++..+-+
T Consensus 159 vvaiGGI 165 (214)
T 1wbh_A 159 FCPTGGI 165 (214)
T ss_dssp EEEBSSC
T ss_pred EEEECCC
Confidence 8877644
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=84.59 E-value=2.6 Score=38.69 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=88.9
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhh-CCC-cEEEEeCC---C-------CCCH
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAV-HPH-CSFILDAN---E-------GYTS 260 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~-~~~-~~L~vDAN---~-------~~s~ 260 (438)
.+|+-...++.+++++ +++++.|.. .+-+|...-.+-+.++.+++. +.+ +.+.+|+. + +|..
T Consensus 75 ~iPvi~~Ggi~~~~~~----~~~~~~Gad--~V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~ 148 (252)
T 1ka9_F 75 FIPLTVGGGVRSLEDA----RKLLLSGAD--KVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRV 148 (252)
T ss_dssp CSCEEEESSCCSHHHH----HHHHHHTCS--EEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTE
T ss_pred CCCEEEECCcCCHHHH----HHHHHcCCC--EEEEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCcc
Confidence 4565555666777654 445566754 445554333344556666664 433 67888874 1 3431
Q ss_pred ---HHHHHHHHHhhhCCCCCceEecCCC------CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 261 ---EEAVEVLGKLNDMGVIPVLFEQPVH------RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 261 ---~~A~~~l~~L~~~~l~~~~iEqPl~------~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
....+.++++.+.+.. ..+=-.+. .-+++.++++++ .+++||...=-+.+++++.++++.+ ++.+
T Consensus 149 ~~~~~~~e~~~~~~~~G~~-~i~~~~~~~~g~~~g~~~~~i~~l~~----~~~ipvia~GGI~~~~d~~~~~~~G-adgv 222 (252)
T 1ka9_F 149 PTGLHAVEWAVKGVELGAG-EILLTSMDRDGTKEGYDLRLTRMVAE----AVGVPVIASGGAGRMEHFLEAFQAG-AEAA 222 (252)
T ss_dssp EEEEEHHHHHHHHHHHTCC-EEEEEETTTTTTCSCCCHHHHHHHHH----HCSSCEEEESCCCSHHHHHHHHHTT-CSEE
T ss_pred ccCCcHHHHHHHHHHcCCC-EEEEecccCCCCcCCCCHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHCC-CHHH
Confidence 1234455555555543 12322222 125777888875 5789998887888899999998754 7777
Q ss_pred EecCCcch-HHHHHHHHHHHHHcCCeE
Q 013681 332 NIKLAKFG-VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 332 ~lk~~~~G-i~~~~~~~~~A~~~gi~~ 357 (438)
.+=-..++ -....+..+.+++.|+++
T Consensus 223 ~vgsal~~~~~~~~~~~~~l~~~~~~~ 249 (252)
T 1ka9_F 223 LAASVFHFGEIPIPKLKRYLAEKGVHV 249 (252)
T ss_dssp EESHHHHTTSSCHHHHHHHHHHTTCCB
T ss_pred HHHHHHHcCCCCHHHHHHHHHHCCCCc
Confidence 65433332 112445556677778764
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=84.55 E-value=18 Score=34.08 Aligned_cols=145 Identities=11% Similarity=0.124 Sum_probs=84.6
Q ss_pred HHHHHhhcCCcEEEEecC-----------CCchHHHHHH----HHHHhhCCCcE--EE--EeCC--CCCCHHHHHHHHHH
Q 013681 211 LASKYCKLGFSTLKLNVG-----------RNITADFDVL----QAIHAVHPHCS--FI--LDAN--EGYTSEEAVEVLGK 269 (438)
Q Consensus 211 ~~~~~~~~Gf~~iKlKvG-----------~d~~~di~~l----~aiR~~~~~~~--L~--vDAN--~~~s~~~A~~~l~~ 269 (438)
.+++..+.|++.+-+-+. .+.++.++.+ +..++.|-.++ |. +++. +..+++++.++++.
T Consensus 84 ~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 163 (295)
T 1ydn_A 84 GYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQ 163 (295)
T ss_dssp HHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 345567889999888753 3456666664 33344444333 22 3322 45789999999999
Q ss_pred hhhCCCCCceEecCCCCCChhhHHHHHHhhccccC-CeEEEc---CCCCCHHHHHHHHHcCCccEEEecCC---------
Q 013681 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYG-ISVVAD---ESCRSLNDVQKVMQENLASVVNIKLA--------- 336 (438)
Q Consensus 270 L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~-iPIa~d---Esl~~~~d~~~ll~~~a~d~i~lk~~--------- 336 (438)
+.+.+.....|=+..-....+...++-+.+++..+ +||..- -+=.........++.+ ++.++.-..
T Consensus 164 ~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG-~~~vd~sv~GlG~cp~a~ 242 (295)
T 1ydn_A 164 LFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKG-LRVFDASVGGLGGCPFAP 242 (295)
T ss_dssp HHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHT-CCEEEEBTTCCSCBTTBT
T ss_pred HHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhC-CCEEEeccccCCCCCCCC
Confidence 99888754456666655556666666666666666 777653 2222333446666665 556665442
Q ss_pred -cchHHHHHHHHHHHHHcCCe
Q 013681 337 -KFGVLGTLQIIKATRKSGLH 356 (438)
Q Consensus 337 -~~Gi~~~~~~~~~A~~~gi~ 356 (438)
+.|-..+..++...+..|+.
T Consensus 243 g~~GN~~~e~lv~~l~~~g~~ 263 (295)
T 1ydn_A 243 GAKGNVDTVAVVEMLHEMGFE 263 (295)
T ss_dssp TSCCBCBHHHHHHHHHHTTCB
T ss_pred CCcCChhHHHHHHHHHhcCCC
Confidence 23422234455555566554
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=84.25 E-value=5.3 Score=37.33 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=66.8
Q ss_pred HHHHHHHhhcCCcEEEEecCC--------CchHHHHHHHHHHhh----CCC--cEEEEeCC-CCC-----CHHHHHHHHH
Q 013681 209 SELASKYCKLGFSTLKLNVGR--------NITADFDVLQAIHAV----HPH--CSFILDAN-EGY-----TSEEAVEVLG 268 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~--------d~~~di~~l~aiR~~----~~~--~~L~vDAN-~~~-----s~~~A~~~l~ 268 (438)
.+-++++.+.|-..+||.-+. +.++=.++|+++++. +.+ +.=|.|+. ++. ..+++++.++
T Consensus 96 ~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~ 175 (255)
T 2qiw_A 96 ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIK 175 (255)
T ss_dssp HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHH
Confidence 666788888999999998662 445667889988885 777 44578873 222 2789999999
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeE
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV 307 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPI 307 (438)
++++.|....|+|-+ + +.+..+++++ ..++|+
T Consensus 176 a~~eAGAd~i~~e~~-~--~~~~~~~i~~----~~~~P~ 207 (255)
T 2qiw_A 176 LMEQAGARSVYPVGL-S--TAEQVERLVD----AVSVPV 207 (255)
T ss_dssp HHHHHTCSEEEECCC-C--SHHHHHHHHT----TCSSCB
T ss_pred HHHHcCCcEEEEcCC-C--CHHHHHHHHH----hCCCCE
Confidence 999887655688875 2 3567788886 455664
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=83.72 E-value=6.5 Score=35.86 Aligned_cols=132 Identities=16% Similarity=0.167 Sum_probs=78.1
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCC------CCCCH--HHHH
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDAN------EGYTS--EEAV 264 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN------~~~s~--~~A~ 264 (438)
+|+-...++.++++ ++.+++.|-..+ -+|...-.+.+++..+++ .+..+.+.+|+. .+|.. .+..
T Consensus 76 ipv~v~ggI~~~~~----~~~~l~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~ 149 (244)
T 1vzw_A 76 IKVELSGGIRDDDT----LAAALATGCTRV--NLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLY 149 (244)
T ss_dssp SEEEEESSCCSHHH----HHHHHHTTCSEE--EECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHH
T ss_pred CcEEEECCcCCHHH----HHHHHHcCCCEE--EECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHH
Confidence 45545555667765 445567786654 455422334455655554 455677788875 24421 0334
Q ss_pred HHHHHhhhCCCCCceEec-----CCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC--CccEEEecC
Q 013681 265 EVLGKLNDMGVIPVLFEQ-----PVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN--LASVVNIKL 335 (438)
Q Consensus 265 ~~l~~L~~~~l~~~~iEq-----Pl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~--a~d~i~lk~ 335 (438)
+.++.+.+.++....+-. ....-+++.++++++ ..++||..+=-+.+.+++.++++.. .++.+.+=-
T Consensus 150 e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~----~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~ 223 (244)
T 1vzw_A 150 ETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCA----ATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGK 223 (244)
T ss_dssp HHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHH----TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECH
T ss_pred HHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHH----hcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeH
Confidence 455555555543222211 111236778888875 5789999998899999999998872 477766543
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=83.57 E-value=3.7 Score=37.44 Aligned_cols=131 Identities=14% Similarity=0.160 Sum_probs=78.0
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCC----------CCCC--H
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDAN----------EGYT--S 260 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN----------~~~s--~ 260 (438)
+|+-...++.++++ ++.+++.|-..+ -+|...-.+.+.+..+++ .+..+.+.+|+. .+|. .
T Consensus 75 ipv~v~ggi~~~~~----~~~~l~~Gad~V--~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~ 148 (244)
T 2y88_A 75 VQVELSGGIRDDES----LAAALATGCARV--NVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDG 148 (244)
T ss_dssp SEEEEESSCCSHHH----HHHHHHTTCSEE--EECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEE
T ss_pred CcEEEECCCCCHHH----HHHHHHcCCCEE--EECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCC
Confidence 45545556667765 455567786644 445322334455655554 455667778875 1342 0
Q ss_pred HHHHHHHHHhhhCCCCCceE---e--cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcC--CccEEEe
Q 013681 261 EEAVEVLGKLNDMGVIPVLF---E--QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQEN--LASVVNI 333 (438)
Q Consensus 261 ~~A~~~l~~L~~~~l~~~~i---E--qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~--a~d~i~l 333 (438)
.+..+.++.+.++++....+ . +-...-+++.++++++ ..++||..+=-+.+.+++.++++.. .++.+.+
T Consensus 149 ~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~----~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 149 GDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVAD----RTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp EEHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHT----TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CCHHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 13455666666666542222 1 1111236777777764 5789999988899999999998762 4677665
Q ss_pred c
Q 013681 334 K 334 (438)
Q Consensus 334 k 334 (438)
=
T Consensus 225 G 225 (244)
T 2y88_A 225 G 225 (244)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.56 E-value=19 Score=33.44 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=50.9
Q ss_pred eeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-Cc---------------------hHHHHHHHHHHhhCCCcEEEE--
Q 013681 197 AITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NI---------------------TADFDVLQAIHAVHPHCSFIL-- 252 (438)
Q Consensus 197 ~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~---------------------~~di~~l~aiR~~~~~~~L~v-- 252 (438)
|.+.+.-+.++..+.++.+.+.|...|.+-+-. |+ +.-++.++++|+..|++.+.+
T Consensus 22 ~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~ 101 (262)
T 2ekc_A 22 YLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMT 101 (262)
T ss_dssp EEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEC
T ss_pred EecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEe
Confidence 344444466777888888888999999886521 11 122355777877655555554
Q ss_pred eCCC------------------------CCCHHHHHHHHHHhhhCCCC
Q 013681 253 DANE------------------------GYTSEEAVEVLGKLNDMGVI 276 (438)
Q Consensus 253 DAN~------------------------~~s~~~A~~~l~~L~~~~l~ 276 (438)
+.|. ....++..++.+.++++++.
T Consensus 102 y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~ 149 (262)
T 2ekc_A 102 YYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLS 149 (262)
T ss_dssp CHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred cCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCc
Confidence 4441 12457777888888888754
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=83.08 E-value=10 Score=35.70 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHH----HHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC-CC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVL----QAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV-IP 277 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l----~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l-~~ 277 (438)
.+.+...+.++++.++|-..+-+..+...+++.+++ ++|++.. ++.|.||.. +++.+.+-++..+..++ ..
T Consensus 31 ~~~~~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~-~~pisIDT~---~~~v~~aal~a~~Ga~iINd 106 (271)
T 2yci_X 31 KDPRPIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVV-DLPCCLDST---NPDAIEAGLKVHRGHAMINS 106 (271)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHC-CCCEEEECS---CHHHHHHHHHHCCSCCEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhC-CCeEEEeCC---CHHHHHHHHHhCCCCCEEEE
Confidence 366788889999999999999998876555566655 4455433 789999976 56666666666543332 11
Q ss_pred ceEecCCCCCChhhHHHHHHhhccccCCeEEE---cCC--CCCHHH----H----HHHHHcC-CccEEEecCCc--ch--
Q 013681 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVA---DES--CRSLND----V----QKVMQEN-LASVVNIKLAK--FG-- 339 (438)
Q Consensus 278 ~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~---dEs--l~~~~d----~----~~ll~~~-a~d~i~lk~~~--~G-- 339 (438)
.|-++ ++++.+..+++ +.+.|+.+ ||. -.+..+ + ..+.+.+ ..+=|.+||.. +|
T Consensus 107 vs~~~----d~~~~~~~~~a----~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~ 178 (271)
T 2yci_X 107 TSADQ----WKMDIFFPMAK----KYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVA 178 (271)
T ss_dssp ECSCH----HHHHHHHHHHH----HHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTS
T ss_pred CCCCc----cccHHHHHHHH----HcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccC
Confidence 12221 33567777765 57788765 331 123222 2 2333333 12248889874 24
Q ss_pred HH---HHHHHHHHHHHcC---CeEEEcc
Q 013681 340 VL---GTLQIIKATRKSG---LHLMIDG 361 (438)
Q Consensus 340 i~---~~~~~~~~A~~~g---i~~~~~s 361 (438)
.. ..++-+...++.+ .++.++-
T Consensus 179 ~~~~~~~l~~l~~~~~~~~p~~p~l~G~ 206 (271)
T 2yci_X 179 QEHAVEVLETIRQIKLMANPAPRTVLGL 206 (271)
T ss_dssp THHHHHHHHHHHHHTTSSSSCCEEEEEG
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEee
Confidence 43 4466666666666 8988874
|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* | Back alignment and structure |
|---|
Probab=82.41 E-value=21 Score=35.92 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=80.1
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEe--cC-------------CCchHHHHHHHHHHhh----CCCcEE-
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLN--VG-------------RNITADFDVLQAIHAV----HPHCSF- 250 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlK--vG-------------~d~~~di~~l~aiR~~----~~~~~L- 250 (438)
.+|+..-+ +.+++..+.+.++.+.+.|.-.+-|- ++ .+.++=+++|++.|+. +++.-|
T Consensus 145 ~lPIiaD~DtGfG~~~nv~rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~d~vIi 224 (433)
T 3eol_A 145 FAPIVADAEAGFGDPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIV 224 (433)
T ss_dssp CCCEEEECC---CCHHHHHHHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCCeEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 46755443 33466667778899999999888774 21 1467778899999863 566544
Q ss_pred -EEeCCCC------------------------------CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhh
Q 013681 251 -ILDANEG------------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFA 299 (438)
Q Consensus 251 -~vDAN~~------------------------------~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~ 299 (438)
|-|+..+ ...++|++.+++..+ +-...|+|-+.+ +.++++++++.+
T Consensus 225 ARTDA~~a~l~~s~~d~rd~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~If~e~~~~--~~eei~~f~~~v 301 (433)
T 3eol_A 225 ARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP-YCDLIWMETSKP--DLAQARRFAEAV 301 (433)
T ss_dssp EEECTTTCCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG-GCSEEEECCSSC--CHHHHHHHHHHH
T ss_pred EEcCCccccccccCcccccccceeccCcccccccccccCCHHHHHHHHHHHHh-cCCEEEEeCCCC--CHHHHHHHHHHh
Confidence 7998653 458999999999888 545569998765 578888998866
Q ss_pred ccccCCe-EEEcC
Q 013681 300 RDTYGIS-VVADE 311 (438)
Q Consensus 300 r~~~~iP-Ia~dE 311 (438)
+...+++ ++.+-
T Consensus 302 ~~~~P~~~L~~~~ 314 (433)
T 3eol_A 302 HKAHPGKLLAYNC 314 (433)
T ss_dssp HHHSTTCCEEEEC
T ss_pred cccCCCcccccCC
Confidence 5434554 44443
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.93 E-value=13 Score=35.44 Aligned_cols=98 Identities=13% Similarity=0.180 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHhhhCCCCCceEecCC--CCCC---hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 256 EGYTSEEAVEVLGKLNDMGVIPVLFEQPV--HRDD---WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~~~~iEqPl--~~~d---~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
..++.++.++++++|++.++. +||.=. .+.. +....++.+.+.+..++|++.- +.+..+++++++.+ ++.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~--~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l--~~~~~~i~~a~~aG-~~~ 99 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLD--YIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAAL--APNLKGFEAALESG-VKE 99 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCS--EEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEE--CCSHHHHHHHHHTT-CCE
T ss_pred CCCCHHHHHHHHHHHHHcCcC--EEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEE--eCCHHHHHHHHhCC-cCE
Confidence 357899999999999999985 899842 1111 1111222233333467787653 25788999999986 667
Q ss_pred EEe-cCCc------------ch-HHHHHHHHHHHHHcCCeEE
Q 013681 331 VNI-KLAK------------FG-VLGTLQIIKATRKSGLHLM 358 (438)
Q Consensus 331 i~l-k~~~------------~G-i~~~~~~~~~A~~~gi~~~ 358 (438)
|.+ +.+. -- +..+.+++++|+++|+.+.
T Consensus 100 v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~ 141 (302)
T 2ftp_A 100 VAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVR 141 (302)
T ss_dssp EEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 775 4331 12 4567899999999999985
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=81.72 E-value=4.5 Score=36.98 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=80.2
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCC------CCCCH---HHH
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDAN------EGYTS---EEA 263 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN------~~~s~---~~A 263 (438)
.+|+-...++.+++++. ++++.|.. ++-+|...-.+-+.++.+++.++.+.+.+|++ .+|.. ...
T Consensus 73 ~ipvi~~Ggi~~~~~~~----~~~~~Gad--~V~lg~~~l~~p~~~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~ 146 (241)
T 1qo2_A 73 AEHIQIGGGIRSLDYAE----KLRKLGYR--RQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDP 146 (241)
T ss_dssp GGGEEEESSCCSHHHHH----HHHHTTCC--EEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCH
T ss_pred CCcEEEECCCCCHHHHH----HHHHCCCC--EEEECchHhhChHHHHHHHHcCCcEEEEEEecCCEEEECCceecCCCCH
Confidence 45665566677777553 34566754 55666533344455666733455567889984 23421 123
Q ss_pred HHHHHHhhhCCCCCceEecCC------CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc-----CCccEEE
Q 013681 264 VEVLGKLNDMGVIPVLFEQPV------HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE-----NLASVVN 332 (438)
Q Consensus 264 ~~~l~~L~~~~l~~~~iEqPl------~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~-----~a~d~i~ 332 (438)
.++++++++.+....++ -.+ ..-|++.++++++ .+++||...=-+.+++++.++++. +.+|.+.
T Consensus 147 ~e~~~~~~~~G~~~i~~-t~~~~~g~~~g~~~~~i~~l~~----~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 147 VSLLKRLKEYGLEEIVH-TEIEKDGTLQEHDFSLTKKIAI----EAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp HHHHHHHHTTTCCEEEE-EETTHHHHTCCCCHHHHHHHHH----HHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHhCCCCEEEE-EeecccccCCcCCHHHHHHHHH----hcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 45566666666542233 222 1236888888875 578999888788899999999886 3267766
Q ss_pred ecC
Q 013681 333 IKL 335 (438)
Q Consensus 333 lk~ 335 (438)
+=-
T Consensus 222 vgs 224 (241)
T 1qo2_A 222 VGR 224 (241)
T ss_dssp ECH
T ss_pred eeH
Confidence 543
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=81.46 E-value=34 Score=31.81 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCC---CchHHHHHH-HHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC-CC
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGR---NITADFDVL-QAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV-IP 277 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~---d~~~di~~l-~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l-~~ 277 (438)
.+++...+.+++++++|-..|-+-.|. +.+++++++ ..|++. .++.|.||.. +++.+.+-++..+..++ ..
T Consensus 22 ~~~~~a~~~a~~~v~~GAdiIDIg~g~~~v~~~ee~~rvv~~i~~~-~~~pisIDT~---~~~v~~aAl~a~~Ga~iINd 97 (262)
T 1f6y_A 22 RDPAPVQEWARRQEEGGARALDLNVGPAVQDKVSAMEWLVEVTQEV-SNLTLCLDST---NIKAIEAGLKKCKNRAMINS 97 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC----CHHHHHHHHHHHHHTT-CCSEEEEECS---CHHHHHHHHHHCSSCEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCChHHHHHHHHHHHHHh-CCCeEEEeCC---CHHHHHHHHhhCCCCCEEEE
Confidence 477888899999999999999998874 445566654 444443 4899999975 55665555555433221 11
Q ss_pred ceEecCCCCCChhhHHHHHHhhccccCCeEEE---cCC-C-CCHHH--------HHHHHHcCC-ccEEEecCCc--ch--
Q 013681 278 VLFEQPVHRDDWSGLHDVSNFARDTYGISVVA---DES-C-RSLND--------VQKVMQENL-ASVVNIKLAK--FG-- 339 (438)
Q Consensus 278 ~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~---dEs-l-~~~~d--------~~~ll~~~a-~d~i~lk~~~--~G-- 339 (438)
.|-+ .++++.|..+++ +.+.|+.+ |+. . .+.++ +..+.+.+- .+=|.+||.. +|
T Consensus 98 vs~~----~d~~~~~~~~~a----~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDPg~g~~g~~ 169 (262)
T 1f6y_A 98 TNAE----REKVEKLFPLAV----EHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVA 169 (262)
T ss_dssp ECSC----HHHHHHHHHHHH----HTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTC
T ss_pred CCCC----cccHHHHHHHHH----HhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEeCCCCcCCCC
Confidence 1222 133457777765 57888765 221 1 11111 233444442 2358999986 23
Q ss_pred H---HHHHHHHHHHHH-c--CCeEEEcc
Q 013681 340 V---LGTLQIIKATRK-S--GLHLMIDG 361 (438)
Q Consensus 340 i---~~~~~~~~~A~~-~--gi~~~~~s 361 (438)
. ...++-+...++ + |.++.++-
T Consensus 170 ~~~~~~~l~~l~~l~~~~~pg~pvl~G~ 197 (262)
T 1f6y_A 170 QDHAPEVLKTLQQIKMLADPAPKTVLGL 197 (262)
T ss_dssp TTHHHHHHHHHHHHHTCCSSCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCEEEee
Confidence 2 356666666676 6 99998874
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=81.44 E-value=11 Score=33.36 Aligned_cols=91 Identities=21% Similarity=0.194 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCCh-hhHHHHHHhhcccc--CCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTY--GISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~-~~~a~L~~~~r~~~--~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
+.+++.++++.+.+.++. +||=-+...+. +..+++++ .. +.+|..+ ++.++++++.+++.+ +|++ +-+
T Consensus 20 ~~~~~~~~~~~~~~~G~~--~iev~~~~~~~~~~i~~ir~----~~~~~~~ig~~-~v~~~~~~~~a~~~G-ad~i-v~~ 90 (205)
T 1wa3_A 20 SVEEAKEKALAVFEGGVH--LIEITFTVPDADTVIKELSF----LKEKGAIIGAG-TVTSVEQCRKAVESG-AEFI-VSP 90 (205)
T ss_dssp SHHHHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHTHH----HHHTTCEEEEE-SCCSHHHHHHHHHHT-CSEE-ECS
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH----HCCCCcEEEec-ccCCHHHHHHHHHcC-CCEE-EcC
Confidence 688999999999998875 78754443222 22344433 33 4777777 467888988888865 8998 554
Q ss_pred CcchHHHHHHHHHHHHHcCCeEEEccCC
Q 013681 336 AKFGVLGTLQIIKATRKSGLHLMIDGMI 363 (438)
Q Consensus 336 ~~~Gi~~~~~~~~~A~~~gi~~~~~s~~ 363 (438)
... .++++.|+++|++++++...
T Consensus 91 ~~~-----~~~~~~~~~~g~~vi~g~~t 113 (205)
T 1wa3_A 91 HLD-----EEISQFCKEKGVFYMPGVMT 113 (205)
T ss_dssp SCC-----HHHHHHHHHHTCEEECEECS
T ss_pred CCC-----HHHHHHHHHcCCcEECCcCC
Confidence 332 35778889999999987643
|
| >3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0 | Back alignment and structure |
|---|
Probab=81.04 E-value=22 Score=34.41 Aligned_cols=158 Identities=10% Similarity=0.008 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCC-chHHHHHHHHHHhhCCCcEEE----Ee---CCC-------CCCHHHHHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIHAVHPHCSFI----LD---ANE-------GYTSEEAVEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d-~~~di~~l~aiR~~~~~~~L~----vD---AN~-------~~s~~~A~~~l~ 268 (438)
+.++..+.++..++.|++.|=.--.-. -..+...=++++..-.++.|. .. .++ .++++...+-++
T Consensus 50 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~R~~v~I~TK~g~~~~~~~~~~~~~~~~~~~~~i~~~~e 129 (348)
T 3n2t_A 50 DDDNGVRTIHAALDEGINLIDTAPVYGFGHSEEIVGRALAEKPNKAHVATKLGLHWVGEDEKNMKVFRDSRPARIRKEVE 129 (348)
T ss_dssp THHHHHHHHHHHHHTTCCEEECCTTGGGGHHHHHHHHHHHHSCCCCEEEEEECEEEESSSTTTCEEEECCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEChhhcCCChHHHHHHHHHhhCCCeEEEEEeecCCCcCCCcccccccCCCCHHHHHHHHH
Confidence 456777888888999999875432111 012222224454322333222 11 111 256665544332
Q ss_pred -HhhhCC---CCCceEecCCCCC----ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcchH
Q 013681 269 -KLNDMG---VIPVLFEQPVHRD----DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFGV 340 (438)
Q Consensus 269 -~L~~~~---l~~~~iEqPl~~~----d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~Gi 340 (438)
.|+.++ |.++++-.|-+.. -|+.|.+|.+ .+.==+.|=|.++...++++++...++++|+..+..--
T Consensus 130 ~SL~rLg~dyiDl~~lH~p~~~~~~~e~~~al~~l~~-----~Gkir~iGvSn~~~~~l~~~~~~~~~~~~Q~~~nl~~~ 204 (348)
T 3n2t_A 130 DSLRRLRVETIDLEQIHWPDDKTPIDESARELQKLHQ-----DGKIRALGVSNFSPEQMDIFREVAPLATIQPPLNLFER 204 (348)
T ss_dssp HHHHHHTCSSEEEEEESSCCTTSCHHHHHHHHHHHHH-----TTSEEEEEEESCCHHHHHHHHHHSCCCEEECBCBTTBC
T ss_pred HHHHHhCCCcEEEEEecCCCCCCCHHHHHHHHHHHHH-----hCcceEEecCCCCHHHHHHHHHhCCccEEEeeecCccC
Confidence 233332 2234566665432 2455555543 34444556677899999999998889999998876531
Q ss_pred HHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 341 LGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 341 ~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
..-.+++.+|+++||.++..+.+.++
T Consensus 205 ~~e~~l~~~~~~~gi~v~a~spL~~G 230 (348)
T 3n2t_A 205 TIEKDILPYAEKHNAVVLAYGALCRG 230 (348)
T ss_dssp GGGGTHHHHHHHHTCEEEEBCTTGGG
T ss_pred chHHHHHHHHHHcCCeEEEeecccCc
Confidence 11256889999999999998877655
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=80.95 E-value=17 Score=36.74 Aligned_cols=133 Identities=11% Similarity=0.050 Sum_probs=83.1
Q ss_pred eeeeeeCCCC-----HHHHHHHHHHHhhcCCcEEEEecCCC----------chHHHHHHHHHHhh---------------
Q 013681 195 STAITIPAVS-----PAEASELASKYCKLGFSTLKLNVGRN----------ITADFDVLQAIHAV--------------- 244 (438)
Q Consensus 195 p~~~~i~~~~-----~~~~~~~~~~~~~~Gf~~iKlKvG~d----------~~~di~~l~aiR~~--------------- 244 (438)
++..++.-+. ++++.+.++++. .+...|-+.++-+ .+.-.+.+++|++.
T Consensus 181 ~vgvni~~~~~~~~~~~dy~~~a~~l~-~~aD~ieiNiscPnt~Glr~lq~~~~l~~il~~v~~~~~~~~~~~~~~~g~~ 259 (443)
T 1tv5_A 181 IVGVSIGKNKDTVNIVDDLKYCINKIG-RYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEST 259 (443)
T ss_dssp EEEEEECCCTTCSCHHHHHHHHHHHHG-GGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHHHC----------
T ss_pred eEEEEecCcccchHHHHHHHHHHHHHh-cCCCEEEEeccCCCCcccccccCHHHHHHHHHHHHHHHhhhcccCccccccC
Confidence 4555555443 677777777764 4899999998731 12223455666642
Q ss_pred ----------------------------------CCCcE-EEEeCCCCCCHHHHHHHHHHhhhCCCCCceE-------ec
Q 013681 245 ----------------------------------HPHCS-FILDANEGYTSEEAVEVLGKLNDMGVIPVLF-------EQ 282 (438)
Q Consensus 245 ----------------------------------~~~~~-L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~i-------Eq 282 (438)
+.++. +.|=-...|+.++..++++.+++.++. .| .+
T Consensus 260 ~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~~~iA~~~~~aGaD--gI~v~ntt~~~ 337 (443)
T 1tv5_A 260 YNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNID--GMIISNTTTQI 337 (443)
T ss_dssp ----------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCS--EEEECCCBSCC
T ss_pred HHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCC--EEEEECCCccc
Confidence 12333 444444448888888999999887754 22 21
Q ss_pred C----CCCC------------ChhhHHHHHHhhcccc--CCeEEEcCCCCCHHHHHHHHHcCCccEEEecC
Q 013681 283 P----VHRD------------DWSGLHDVSNFARDTY--GISVVADESCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 283 P----l~~~------------d~~~~a~L~~~~r~~~--~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
+ +... .++..++++ +.+ .+||...=-+.+.+|+.+.+..+ +|.|++=-
T Consensus 338 ~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~----~~v~~~iPVIg~GGI~s~~DA~e~l~aG-Ad~Vqigr 403 (443)
T 1tv5_A 338 NDIKSFENKKGGVSGAKLKDISTKFICEMY----NYTNKQIPIIASGGIFSGLDALEKIEAG-ASVCQLYS 403 (443)
T ss_dssp CCCGGGTTCCSEEEEHHHHHHHHHHHHHHH----HHTTTCSCEEEESSCCSHHHHHHHHHTT-EEEEEESH
T ss_pred ccccccccccCCcCCCcchHHHHHHHHHHH----HHcCCCCcEEEECCCCCHHHHHHHHHcC-CCEEEEcH
Confidence 1 0000 012233343 345 79999999999999999999987 89998753
|
| >3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A | Back alignment and structure |
|---|
Probab=80.63 E-value=18 Score=36.30 Aligned_cols=115 Identities=13% Similarity=0.005 Sum_probs=79.7
Q ss_pred eeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEe--c------C-------CCchHHHHHHHHHHhh----CCCcE--E
Q 013681 194 LSTAITI--PAVSPAEASELASKYCKLGFSTLKLN--V------G-------RNITADFDVLQAIHAV----HPHCS--F 250 (438)
Q Consensus 194 ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlK--v------G-------~d~~~di~~l~aiR~~----~~~~~--L 250 (438)
+|+..-+ +.+++..+.+.++.+.+.|...+-|. + | .+.++-+++|+++|+. ++++- -
T Consensus 153 lPviaD~DtGyG~~~~v~~tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~IiA 232 (435)
T 3lg3_A 153 LPIVADAEAGFGGVLNAFELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPTLLIA 232 (435)
T ss_dssp CCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred CCeEEECCCCCCCcHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 6655543 33466667777889999999888774 2 1 1466778889888762 56644 4
Q ss_pred EEeCCCC----------------------------CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccc
Q 013681 251 ILDANEG----------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (438)
Q Consensus 251 ~vDAN~~----------------------------~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~ 302 (438)
|.|+..+ ...++|++.+++..+ +-...|+|-+.+ +.++++++++.++..
T Consensus 233 RTDa~aa~l~~s~~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~if~E~~~~--~~~ei~~f~~~v~~~ 309 (435)
T 3lg3_A 233 RTDADAADLLTSDCDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-YADLVWCETSTP--DLALAKRFADAVHAQ 309 (435)
T ss_dssp EECTTTCCEESCCCCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-GCSEEEECCSSC--CHHHHHHHHHHHHHH
T ss_pred EcCCccccccccccccccchhhcccccccccccccCCHHHHHHHHHHHHc-cCCEEEecCCCC--CHHHHHHHHHHhccc
Confidence 8998653 568999999999988 655569986654 578888998866543
Q ss_pred cCCe-EEEcC
Q 013681 303 YGIS-VVADE 311 (438)
Q Consensus 303 ~~iP-Ia~dE 311 (438)
.+.. ++.+-
T Consensus 310 ~P~~~La~~~ 319 (435)
T 3lg3_A 310 FPGKLLAYNC 319 (435)
T ss_dssp STTCEEEEEC
T ss_pred cCCeEEEeCC
Confidence 4544 44443
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=80.62 E-value=50 Score=33.44 Aligned_cols=164 Identities=12% Similarity=0.164 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCCC--------chHHHHHHHHHHhhCCCcEEEEeC---CC-CCC--HHHH-HHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGRN--------ITADFDVLQAIHAVHPHCSFILDA---NE-GYT--SEEA-VEVLG 268 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~d--------~~~di~~l~aiR~~~~~~~L~vDA---N~-~~s--~~~A-~~~l~ 268 (438)
+.+++.+.++.+.+.|+..|.+-.|.. -+++.++++++++..++..+.+=. |- +++ ++++ ..+++
T Consensus 28 ~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~ 107 (464)
T 2nx9_A 28 RIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVE 107 (464)
T ss_dssp CGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHH
Confidence 556677778888889999999976542 257889999999876666554333 32 343 3433 45677
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeE--EE---cCCCCCHHHH----HHHHHcCCccEEEecCCc-c
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISV--VA---DESCRSLNDV----QKVMQENLASVVNIKLAK-F 338 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPI--a~---dEsl~~~~d~----~~ll~~~a~d~i~lk~~~-~ 338 (438)
+..+.++. .|-=-.+..|.+.+....+.+++ .+..+ .. |-.-.+++.+ +++.+.+ ++.|.++=+. .
T Consensus 108 ~a~~~Gvd--~i~if~~~sd~~ni~~~i~~ak~-~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~G-ad~I~l~DT~G~ 183 (464)
T 2nx9_A 108 RAVKNGMD--VFRVFDAMNDVRNMQQALQAVKK-MGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELG-VDSIALKDMAGI 183 (464)
T ss_dssp HHHHTTCC--EEEECCTTCCTHHHHHHHHHHHH-TTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTT-CSEEEEEETTSC
T ss_pred HHHhCCcC--EEEEEEecCHHHHHHHHHHHHHH-CCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCC-CCEEEEcCCCCC
Confidence 77766654 33322334455666555544443 45554 22 3344455544 4555554 6777776554 2
Q ss_pred h-HHHHHHHHHHH-HHcCCeEEEccCCchhHHHHH
Q 013681 339 G-VLGTLQIIKAT-RKSGLHLMIDGMIETRLATGF 371 (438)
Q Consensus 339 G-i~~~~~~~~~A-~~~gi~~~~~s~~es~ig~~a 371 (438)
+ -....+++... ++.++++-+|+-...+++.+-
T Consensus 184 ~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN 218 (464)
T 2nx9_A 184 LTPYAAEELVSTLKKQVDVELHLHCHSTAGLADMT 218 (464)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHH
Confidence 3 45556655544 445889998887666665543
|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A | Back alignment and structure |
|---|
Probab=80.41 E-value=50 Score=33.07 Aligned_cols=115 Identities=10% Similarity=-0.008 Sum_probs=80.6
Q ss_pred eeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEec--------C-------CCchHHHHHHHHHHhh----CCCcE--E
Q 013681 194 LSTAITI--PAVSPAEASELASKYCKLGFSTLKLNV--------G-------RNITADFDVLQAIHAV----HPHCS--F 250 (438)
Q Consensus 194 ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKv--------G-------~d~~~di~~l~aiR~~----~~~~~--L 250 (438)
+|+..-+ +.+++..+.+.++.+.+.|.-.+-|-= | .+.++=+++|+++|.. +++.- -
T Consensus 149 ~PIiaD~DtGfG~~~nv~~tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lvp~~e~v~rI~AAr~A~~~~g~d~vIiA 228 (429)
T 1f8m_A 149 APIVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVVIA 228 (429)
T ss_dssp CCEEEECTTTTSSHHHHHHHHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEECCHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEECCCCCCCcHHHHHHHHHHHHcCCEEEEEecCCCccccccCCCCCeeeCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 6655443 334666677888999999998887642 1 1467788899999863 45643 4
Q ss_pred EEeCCCC----------------------------CCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccc
Q 013681 251 ILDANEG----------------------------YTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDT 302 (438)
Q Consensus 251 ~vDAN~~----------------------------~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~ 302 (438)
|-|+..+ ...++|++.+++..+ +-...|+|-+.+ +.+.++++++.++..
T Consensus 229 RTDa~~a~li~s~~d~~d~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa~-gAD~if~e~~~~--~~eei~~f~~~v~~~ 305 (429)
T 1f8m_A 229 RTDAEAATLITSDVDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAP-FADLIWMETGTP--DLEAARQFSEAVKAE 305 (429)
T ss_dssp EECTTTCCEESCCCSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-GCSEEEECCSSC--CHHHHHHHHHHHHTT
T ss_pred EechhhhccccccccccccccccCCCCcccccccccCHHHHHHHHHHHHh-cCCEEEeCCCCC--CHHHHHHHHHHhccc
Confidence 7999753 568999999999888 444469997664 578899998866543
Q ss_pred cCC-eEEEcC
Q 013681 303 YGI-SVVADE 311 (438)
Q Consensus 303 ~~i-PIa~dE 311 (438)
.|+ +++..-
T Consensus 306 ~P~~~La~n~ 315 (429)
T 1f8m_A 306 YPDQMLAYNC 315 (429)
T ss_dssp CTTCEEEEEC
T ss_pred CCCceeecCC
Confidence 454 565543
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=80.33 E-value=18 Score=35.52 Aligned_cols=125 Identities=13% Similarity=0.141 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHhhcCCcEEEEecCC----------CchHHHHHHHHHHhh---C---CCcEEEEeCCCCCCHHHHHHHH
Q 013681 204 SPAEASELASKYCKLGFSTLKLNVGR----------NITADFDVLQAIHAV---H---PHCSFILDANEGYTSEEAVEVL 267 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~Gf~~iKlKvG~----------d~~~di~~l~aiR~~---~---~~~~L~vDAN~~~s~~~A~~~l 267 (438)
+++++.+.++.+ ..+...|-+.++- +.+.-.+.++++++. . .++.+.|=-.-.++.++..+++
T Consensus 162 ~~~dy~~~~~~~-~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia 240 (367)
T 3zwt_A 162 AAEDYAEGVRVL-GPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIA 240 (367)
T ss_dssp HHHHHHHHHHHH-GGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHH-hhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHH
Confidence 577777767665 4567899999872 122223456666652 1 2455555555557888888999
Q ss_pred HHhhhCCCCCceE-------ecC-----CCCC-------------ChhhHHHHHHhhcccc--CCeEEEcCCCCCHHHHH
Q 013681 268 GKLNDMGVIPVLF-------EQP-----VHRD-------------DWSGLHDVSNFARDTY--GISVVADESCRSLNDVQ 320 (438)
Q Consensus 268 ~~L~~~~l~~~~i-------EqP-----l~~~-------------d~~~~a~L~~~~r~~~--~iPIa~dEsl~~~~d~~ 320 (438)
+.+++.++. .| ..+ .... .++..+++++ .. .+||.+.=.+.+.+|+.
T Consensus 241 ~~~~~aGad--gi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~----~v~~~ipvI~~GGI~s~~da~ 314 (367)
T 3zwt_A 241 SVVKELGID--GLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYA----LTQGRVPIIGVGGVSSGQDAL 314 (367)
T ss_dssp HHHHHHTCC--EEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHH----HTTTCSCEEEESSCCSHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHH----HcCCCceEEEECCCCCHHHHH
Confidence 999887653 22 221 1000 1223344443 45 79999999999999999
Q ss_pred HHHHcCCccEEEecCC
Q 013681 321 KVMQENLASVVNIKLA 336 (438)
Q Consensus 321 ~ll~~~a~d~i~lk~~ 336 (438)
+.++.+ +|.|++=-.
T Consensus 315 ~~l~~G-Ad~V~vgra 329 (367)
T 3zwt_A 315 EKIRAG-ASLVQLYTA 329 (367)
T ss_dssp HHHHHT-CSEEEESHH
T ss_pred HHHHcC-CCEEEECHH
Confidence 999976 688887543
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=80.32 E-value=44 Score=32.29 Aligned_cols=163 Identities=10% Similarity=0.085 Sum_probs=93.2
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEe----cC-------CCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 013681 203 VSPAEASELASKYCKLGFSTLKLN----VG-------RNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlK----vG-------~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (438)
.+.++..+.++.+.+.|+..|-+- ++ .....+.+.++++++..+++.+.+=.+-++..+ +.+++..
T Consensus 27 ~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~---~~i~~a~ 103 (345)
T 1nvm_A 27 YTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSV---HDLKNAY 103 (345)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccH---HHHHHHH
Confidence 367888889999999999999984 32 123568889999998777766653312122222 3455554
Q ss_pred hCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEc---CCCCCHHHH----HHHHHcCCccEEEecCCc-ch-HHH
Q 013681 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD---ESCRSLNDV----QKVMQENLASVVNIKLAK-FG-VLG 342 (438)
Q Consensus 272 ~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~d---Esl~~~~d~----~~ll~~~a~d~i~lk~~~-~G-i~~ 342 (438)
+.++. .+==|++..+.+.+.+..+.+++ .++.+... -.-.+++.+ +.+.+.+ ++.|.++=+. .. ...
T Consensus 104 ~aGvd--~v~I~~~~s~~~~~~~~i~~ak~-~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~G-a~~i~l~DT~G~~~P~~ 179 (345)
T 1nvm_A 104 QAGAR--VVRVATHCTEADVSKQHIEYARN-LGMDTVGFLMMSHMIPAEKLAEQGKLMESYG-ATCIYMADSGGAMSMND 179 (345)
T ss_dssp HHTCC--EEEEEEETTCGGGGHHHHHHHHH-HTCEEEEEEESTTSSCHHHHHHHHHHHHHHT-CSEEEEECTTCCCCHHH
T ss_pred hCCcC--EEEEEEeccHHHHHHHHHHHHHH-CCCEEEEEEEeCCCCCHHHHHHHHHHHHHCC-CCEEEECCCcCccCHHH
Confidence 44543 22223444444555555444433 34444322 333455544 3333443 6677775443 22 445
Q ss_pred HHHHHHHHHH-c--CCeEEEccCCchhHHHHHH
Q 013681 343 TLQIIKATRK-S--GLHLMIDGMIETRLATGFA 372 (438)
Q Consensus 343 ~~~~~~~A~~-~--gi~~~~~s~~es~ig~~a~ 372 (438)
..++++..++ . ++++.+|+-...+++.+-+
T Consensus 180 v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~ 212 (345)
T 1nvm_A 180 IRDRMRAFKAVLKPETQVGMHAHHNLSLGVANS 212 (345)
T ss_dssp HHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEECCCccHHHHHH
Confidence 5666555544 4 6899999876666665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 438 | ||||
| d1jpdx1 | 208 | c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Esch | 7e-24 | |
| d1jdfa1 | 309 | c.1.11.2 (A:138-446) D-glucarate dehydratase {Esch | 2e-21 | |
| d1kcza1 | 253 | c.1.11.2 (A:161-413) beta-Methylaspartase {Clostri | 3e-21 | |
| d1jpma1 | 234 | c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Baci | 4e-20 | |
| d1r6wa1 | 221 | c.1.11.2 (A:100-320) O-succinylbenzoate synthase { | 2e-19 | |
| d1kkoa1 | 251 | c.1.11.2 (A:161-411) beta-Methylaspartase {Citroba | 3e-19 | |
| d2chra1 | 244 | c.1.11.2 (A:127-370) Chlormuconate cycloisomerase | 7e-13 | |
| d1wufa1 | 244 | c.1.11.2 (A:1127-1370) N-acylamino acid racemase { | 3e-12 | |
| d1jpma2 | 125 | d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacill | 3e-12 | |
| d1yeya1 | 252 | c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas | 5e-12 | |
| d1muca2 | 127 | d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (ci | 2e-11 | |
| d1wufa2 | 126 | d.54.1.1 (A:1001-1126) N-acylamino acid racemase { | 9e-11 | |
| d2chra2 | 126 | d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {A | 3e-10 | |
| d1muca1 | 242 | c.1.11.2 (A:131-372) Muconate-lactonizing enzyme { | 5e-10 | |
| d2gl5a2 | 122 | d.54.1.1 (A:1-122) Putative dehydratase protein ST | 5e-10 | |
| d1wuea2 | 126 | d.54.1.1 (A:1001-1126) N-acylamino acid racemase { | 6e-10 | |
| d1wuea1 | 241 | c.1.11.2 (A:1127-1367) N-acylamino acid racemase { | 8e-10 | |
| d1nu5a1 | 243 | c.1.11.2 (A:127-369) Chlormuconate cycloisomerase | 2e-09 | |
| d1r0ma1 | 243 | c.1.11.2 (A:133-375) N-acylamino acid racemase {De | 3e-09 | |
| d1r0ma2 | 127 | d.54.1.1 (A:6-132) N-acylamino acid racemase {Dein | 3e-09 | |
| d1tzza2 | 140 | d.54.1.1 (A:1006-1145) Hypothetical protein Bll673 | 5e-09 | |
| d2mnra2 | 130 | d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas | 7e-09 | |
| d1nu5a2 | 126 | d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {P | 1e-08 | |
| d1sjda2 | 125 | d.54.1.1 (A:1-125) N-acylamino acid racemase {Amyc | 2e-08 | |
| d1jpdx2 | 116 | d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Esche | 1e-07 | |
| d2gdqa2 | 115 | d.54.1.1 (A:4-118) Hypothetical protein YitF {Baci | 2e-07 | |
| d1tzza1 | 247 | c.1.11.2 (A:1146-1392) Hypothetical protein Bll673 | 6e-07 | |
| d1bqga2 | 132 | d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseud | 7e-07 | |
| d1r6wa2 | 101 | d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Es | 7e-07 | |
| d1yeya2 | 139 | d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas c | 9e-07 | |
| d1sjda1 | 242 | c.1.11.2 (A:126-367) N-acylamino acid racemase {Am | 2e-06 | |
| d1rvka2 | 126 | d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {A | 8e-06 | |
| d2gdqa1 | 256 | c.1.11.2 (A:119-374) Hypothetical protein YitF {Ba | 9e-06 | |
| d1jdfa2 | 133 | d.54.1.1 (A:5-137) D-glucarate dehydratase {Escher | 2e-05 | |
| d1rvka1 | 255 | c.1.11.2 (A:127-381) Hypothetical protein Atu3453 | 2e-04 | |
| d2mnra1 | 227 | c.1.11.2 (A:133-359) Mandelate racemase {Pseudomon | 7e-04 |
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 96.5 bits (239), Expect = 7e-24
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 16/209 (7%)
Query: 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFIL 252
++ TA T+ +P + + AS + G LK+ + ++ + + + AI P + I+
Sbjct: 5 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLIS--ERMVAIRTAVPDATLIV 62
Query: 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES 312
DANE + +E L D+ + EQP+ D + L + + + + ADES
Sbjct: 63 DANESWRAEGLAARCQLLADL--GVAMLEQPLPAQDDAALENF------IHPLPICADES 114
Query: 313 CRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGF 371
C + ++++ + +VNIKL K G+ L + R G LM+ M+ T A
Sbjct: 115 CHTRSNLKALKGR--YEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 172
Query: 372 ALHLAAGLGCIKYVNLNTPFLLSEDPFVG 400
AL L + + +L+ P L+ D
Sbjct: 173 ALPLVPQ---VSFADLDGPTWLAVDVEPA 198
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 91.8 bits (227), Expect = 2e-21
Identities = 31/204 (15%), Positives = 65/204 (31%), Gaps = 6/204 (2%)
Query: 201 PAVSPAEASELASKYC-KLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGY 258
A++P LA K GF+ KL G + + + A+ P LD N +
Sbjct: 44 EAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAW 103
Query: 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLND 318
+ EA+++ L E P + +V R G+ +
Sbjct: 104 SLNEAIKIGKYLKGS---LAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQ 160
Query: 319 VQKVMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAG 378
+ + + + + G++++ + + GL ++ H+AA
Sbjct: 161 MGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSDNHFDISLAMFTHVAAA 220
Query: 379 L-GCIKYVNLNTPFLLSEDPFVGG 401
G I ++ + +
Sbjct: 221 APGKITAIDTHWIWQEGNQRLTKE 244
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Score = 90.1 bits (223), Expect = 3e-21
Identities = 27/185 (14%), Positives = 55/185 (29%), Gaps = 22/185 (11%)
Query: 219 GFSTLKLNVGRNITADFDVLQAIHA--------------VHPHCSFILDANEGYTSEEAV 264
+ ++ +G + ++ + H + A +
Sbjct: 36 LINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMA 95
Query: 265 EVLGKLNDMGV-IPVLFEQPVHRDDWSG---LHDVSNFARDTYGIS--VVADESCRSLND 318
+ + L + + E P+ +D D G+ +VADE C ++ D
Sbjct: 96 DYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVED 155
Query: 319 VQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFALHLA 376
V+ +V IK G V I + +G+ G ET + ++
Sbjct: 156 VKFFTDNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIG 215
Query: 377 AGLGC 381
G
Sbjct: 216 MACGA 220
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 87.0 bits (214), Expect = 4e-20
Identities = 80/230 (34%), Positives = 115/230 (50%), Gaps = 7/230 (3%)
Query: 192 NSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIH-AVHPHCS 249
++L T T+ SP E + A Y K GF TLK+ VG+ +I D +Q I V
Sbjct: 3 DTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVK 62
Query: 250 FILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309
LDAN+G+ +EAV + K+ D G+ L EQPVH+DD +GL V++ ++A
Sbjct: 63 LRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDA----TDTPIMA 118
Query: 310 DESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLA 368
DES + +V+Q A ++NIKL K G + G +I G+ M+ MIET+L
Sbjct: 119 DESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLG 178
Query: 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
A H AA I + + P +L D F GG SG+ + G G
Sbjct: 179 ITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 228
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 84.5 bits (208), Expect = 2e-19
Identities = 32/204 (15%), Positives = 54/204 (26%), Gaps = 11/204 (5%)
Query: 196 TAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDA 254
A + P + + G K+ VG D V+ + P LDA
Sbjct: 6 RAAPLCNGDPDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDA 63
Query: 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR 314
N +T + + +N + +
Sbjct: 64 NRAWTPLKGQQFAKYVNPDYRDRI--AFLEEPCKTRDDSR-----AFARETGIAIAWDES 116
Query: 315 SLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373
+ E V IK + + ++A GL +I IE+ L
Sbjct: 117 LREPDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLA 176
Query: 374 HLAAGLGCIKYVNLNTPFLLSEDP 397
+AA L L+T L+
Sbjct: 177 RIAAWLTPDTIPGLDTLDLMQAQQ 200
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Score = 84.2 bits (208), Expect = 3e-19
Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 22/185 (11%)
Query: 219 GFSTLKLNVGR---NITADFDVL-QAIHAV------HPHCSFI----LDANEGYTSEEAV 264
+ ++ +G + L I ++ HP +
Sbjct: 36 LINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCA 95
Query: 265 EVLGKLNDM-GVIPVLFEQPV----HRDDWSGL-HDVSNFARDTYGISVVADESCRSLND 318
E + L +P+ E PV D L R G+ +VADE C + D
Sbjct: 96 EYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQD 155
Query: 319 VQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDG-MIETRLATGFALHLA 376
+ +V IK G + + + K G+ G ET ++ +H+A
Sbjct: 156 IVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVA 215
Query: 377 AGLGC 381
Sbjct: 216 LAARP 220
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 65.8 bits (159), Expect = 7e-13
Identities = 43/232 (18%), Positives = 92/232 (39%), Gaps = 11/232 (4%)
Query: 192 NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIH-AVHPHC 248
+++ A T+ + + + K+ +G R+ D ++A+ ++
Sbjct: 4 SAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKA 63
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
+D N+ + + A + L EQPV R++ L +S+ ++++
Sbjct: 64 YLRVDVNQAWDEQVASVY--IPELEALGVELIEQPVGRENTQALRRLSDN----NRVAIM 117
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSGLHLMIDGMIETRL 367
ADES +L + ++ V ++KL G + T +I SG+ M+++ +
Sbjct: 118 ADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTI 177
Query: 368 ATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
T AL L + + + + L PF+L++ E+ G G
Sbjct: 178 GTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHG 229
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 64.2 bits (155), Expect = 3e-12
Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 12/230 (5%)
Query: 192 NSLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSF 250
S+ ++I + +L ++Y G+ +KL + N D ++A+ P S
Sbjct: 3 ESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEAVRKSFPKLSL 60
Query: 251 ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310
+ DAN Y E+ + + + EQP D+ + + + D
Sbjct: 61 MADANSAYNREDFLLLKELDQYDLEM---IEQPFGTKDFVDHAWLQKQLKTRICL----D 113
Query: 311 ESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMIDGMIETRLAT 369
E+ RS+ DV++ +N+KLA+ G+ L+I + + + + GM+E +
Sbjct: 114 ENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVWCGGMLEAGVGR 173
Query: 370 GFALHLAAGLGCIKYVNLN-TPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
+ LAA + +++ + +ED E++ G G
Sbjct: 174 AHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIG 223
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Score = 61.1 bits (147), Expect = 3e-12
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ R E + V L+ P L +V E+V +R+ +G VGWGE ++TGD ++
Sbjct: 3 IIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI 62
Query: 127 VKVREA--CQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLW 184
L L +I +L G+ A +A VEMAL D A +PL+
Sbjct: 63 ESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSA--KAAVEMALYDGWAQMCGLPLY 120
Query: 185 RLFGG 189
++ GG
Sbjct: 121 QMLGG 125
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 63.4 bits (153), Expect = 5e-12
Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 7/176 (3%)
Query: 204 SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAI-HAVHPHCSFILDANEGYTSEE 262
S + LA + GF T+KL VG N+ D + A+ P + +DAN+ +
Sbjct: 15 SDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGP 74
Query: 263 AVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKV 322
A++ + +L + + E+P DD G + + V E ++ +++
Sbjct: 75 AIDWMRQLAEFDIAW--IEEPTSPDDVLGHAAIRQ---GITPVPVSTGEHTQNRVVFKQL 129
Query: 323 MQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAA 377
+Q ++ I A+ G V L I+ K G+ + L +A
Sbjct: 130 LQAGAVDLIQIDAARVGGVNENLAILLLAAKFGVRVFPHAGGVGLCELVQHLAMAD 185
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Score = 59.2 bits (142), Expect = 2e-11
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
++R + +++ P L + +++ V +RV S+G G GE + +
Sbjct: 3 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 62
Query: 127 VKVREACQ----FLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
L +N A+ ++ ++ G+ FA ++G+E AL+DA + +P
Sbjct: 63 GIKANIDAHLAPALIGLAADNINAAMLKLDKLAKGNTFA--KSGIESALLDAQGKRLGLP 120
Query: 183 LWRLFGG 189
+ L GG
Sbjct: 121 VSELLGG 127
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Score = 57.1 bits (137), Expect = 9e-11
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVT----GDQ 122
Q+A + L AP +++ + I + G G+GE+ PL
Sbjct: 3 FQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLS 62
Query: 123 TKALVKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIP 182
+ L+ + L Q + E+ + G+E A +A VE+A+ DA A
Sbjct: 63 SAILIIKEQLLPLLAQRKIRKPE-EIQELFSWIQGNEMA--KAAVELAVWDAFAKMEKRS 119
Query: 183 LWRLFG 188
L ++ G
Sbjct: 120 LAKMIG 125
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Score = 55.7 bits (133), Expect = 3e-10
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ E ++V P+ + +++V V +RV S G VG GE V A
Sbjct: 3 IDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVY-SEGLVGVGEGGSVGGPVWSAECAE 61
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGS--EFASVRAGVEMALIDAVANSIDIPLW 184
++L T F + + + + AS +A VEMAL+D A ++ + +
Sbjct: 62 TIKIIVERYLAPHLLGTDAFNVSGALQTMARAVTGNASAKAAVEMALLDLKARALGVSIA 121
Query: 185 RLFGG 189
L GG
Sbjct: 122 ELLGG 126
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Score = 57.3 bits (137), Expect = 5e-10
Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 11/240 (4%)
Query: 192 NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVGRN-ITADFDVLQAIH-AVHPHC 248
+SL A T+ + A +E KL +G N + D + I +
Sbjct: 4 DSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSA 63
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
S +D N+ + +A+ L EQP+ R + G + ++
Sbjct: 64 SVRVDVNQYWDESQAIRA--CQVLGDNGIDLIEQPISRINRGGQVRL----NQRTPAPIM 117
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKL-AKFGVLGTLQIIKATRKSGLHLMIDGMIETRL 367
ADES S+ D + + AS+ +K+ G L+ + +G+ L M+E +
Sbjct: 118 ADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIGLYGGTMLEGSI 177
Query: 368 ATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426
T + H L + + L P LL+E+ + + G G L +
Sbjct: 178 GTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDFQLHIPRTPGLGLTLDEQRL 237
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Score = 54.9 bits (131), Expect = 5e-10
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 79 LSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQ 138
++ + V IRV +G G GEV + +++
Sbjct: 11 CELKKRDQ--TMSSYNPVLIRVNTDSGLSGIGEVGLAYGAGAKAGVGIIRDLAPLIVGED 68
Query: 139 SPPTTLNFALDEIA---RILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189
+ + G+ F + + +++AL D + +P+++L GG
Sbjct: 69 PLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGG 122
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 55.0 bits (131), Expect = 6e-10
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 1/123 (0%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+Q E ++ + L P +E + G G+GE+ Q +
Sbjct: 3 IQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLV 62
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFA-SVRAGVEMALIDAVANSIDIPLWR 185
+ Q L T E++ I + +A +E A+ D A L
Sbjct: 63 TERFIIQQHLIPLLLTEAIEQPQEVSTIFEEVKGHWMGKAALETAIWDLYAKRQQKSLTE 122
Query: 186 LFG 188
FG
Sbjct: 123 FFG 125
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Score = 56.6 bits (135), Expect = 8e-10
Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 12/234 (5%)
Query: 196 TAITIP-AVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDA 254
I++ + + + G+ +KL + D + + I P+ ++DA
Sbjct: 7 VGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRPGY--DVEPVALIRQHFPNLPLMVDA 64
Query: 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCR 314
N YT + ++ + + EQP DD+ + + + DE+ R
Sbjct: 65 NSAYTLADLPQLQRLDHYQLAM---IEQPFAADDFLDHAQLQRELKTRICL----DENIR 117
Query: 315 SLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFAL 373
SL D Q + +N+K+ + G+ L+I +++ L + + GM E+ + L
Sbjct: 118 SLKDCQVALALGSCRSINLKIPRVGGIHEALKIAAFCQENDLLVWLGGMFESGVGRALNL 177
Query: 374 HLAAGLGCIKYVNLN-TPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426
A+ +++ T ED + G G L T +
Sbjct: 178 QFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNL 231
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 55.8 bits (133), Expect = 2e-09
Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 11/232 (4%)
Query: 192 NSLSTAITIPAVSPAE-ASELASKYCKLGFSTLKLNVG-RNITADFDVLQAIH-AVHPHC 248
S+ A T+ + A + K+ +G R D + +++I AV
Sbjct: 4 TSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRA 63
Query: 249 SFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVV 308
S +D N+G+ + A + +L + GV V P + G++++
Sbjct: 64 SVRVDVNQGWDEQTASIWIPRLEEAGVELVEQPVPRANFGA------LRRLTEQNGVAIL 117
Query: 309 ADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRL 367
ADES SL+ ++ +++ ++KL G + TL++ +G+ M+++ +
Sbjct: 118 ADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTV 177
Query: 368 ATGFALHLAAGLGCIKY-VNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
T ALH+ A L + Y L P++L + E+ + G G
Sbjct: 178 GTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLG 229
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 55.4 bits (132), Expect = 3e-09
Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 12/230 (5%)
Query: 192 NSLSTAITIPAVSPAEAS-ELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSF 250
+ +++ + +A+ +L ++ + G+ +KL + D ++A P
Sbjct: 3 EQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKPGW--DVQPVRATREAFPDIRL 60
Query: 251 ILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVAD 310
+DAN YT + L +L++ + EQP+ DD +++ + D
Sbjct: 61 TVDANSAYTLAD-AGRLRQLDEYDLTY--IEQPLAWDDLVDHAELARR----IRTPLCLD 113
Query: 311 ESCRSLNDVQKVMQENLASVVNIKLAKFGVL-GTLQIIKATRKSGLHLMIDGMIETRLAT 369
ES S +D +K + V+N+K+A+ G + ++ + G + GM+E+ +
Sbjct: 114 ESVASASDARKALALGAGGVINLKVARVGGHAESRRVHDVAQSFGAPVWCGGMLESGIGR 173
Query: 370 GFALHLAAGLGCIKYVNL-NTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
+HL+ + + D E + G G
Sbjct: 174 AHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTG 223
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} Length = 127 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Score = 53.0 bits (126), Expect = 3e-09
Identities = 21/123 (17%), Positives = 34/123 (27%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
++ AE + L + + + + ++T A
Sbjct: 5 IEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHGEGVQGVAEGTMEARPMYREETIAG 64
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
FL T + RA VEMA D A ++ +PL L
Sbjct: 65 ALDLLRGTFLPAILGQTFANPEAVSDALGSYRGNRMARAMVEMAAWDLWARTLGVPLGTL 124
Query: 187 FGG 189
GG
Sbjct: 125 LGG 127
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 52.6 bits (125), Expect = 5e-09
Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 13/130 (10%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG-DQTKALVKVRE 131
RE+ +S+P+ + + V G V G L++ R
Sbjct: 7 REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQGGLIRERF 66
Query: 132 ACQFLRQSPPTTLNFALDEIARIL------------PGSEFASVRAGVEMALIDAVANSI 179
A + L P LN A D + E + ++MA+ DAVA
Sbjct: 67 ASRILEADPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIA 126
Query: 180 DIPLWRLFGG 189
PL+RL
Sbjct: 127 GKPLFRLLAE 136
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 51.8 bits (123), Expect = 7e-09
Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 5/128 (3%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ R +NV L+ P+ + +V V I + S G VG + V K L
Sbjct: 4 ITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQL 63
Query: 127 VKVREACQFLRQSPPTTLNF---ALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPL 183
+ + + P ++ AG++MA DA+ + PL
Sbjct: 64 L--DDMAAMIVNEPLAPVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPL 121
Query: 184 WRLFGGAS 191
+L G +
Sbjct: 122 VKLLGANA 129
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Score = 51.0 bits (121), Expect = 1e-08
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
++ ++V PL + ++V V ++V+ + G VG GE V T A
Sbjct: 3 IEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVK-AGGLVGIGEGGSVGGPTWGSESAE 61
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGS--EFASVRAGVEMALIDAVANSIDIPLW 184
+L L + ++ + S +A +++AL D A ++++ +
Sbjct: 62 TIKVIIDNYLAPLLVGKDASNLSQARVLMDRAVTGNLSAKAAIDIALHDLKARALNLSIA 121
Query: 185 RLFGG 189
L GG
Sbjct: 122 DLIGG 126
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 50.3 bits (119), Expect = 2e-08
Identities = 16/122 (13%), Positives = 34/122 (27%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ E R + + L AP + E + +R G V + + +
Sbjct: 3 LSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAGEGWGECVTMAGPLYSSEYNDG 62
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
+ + A + + +EMA++DA + +
Sbjct: 63 AEHVLRHYLIPALLAAEDITAAKVTPLLAKFKGHRMAKGALEMAVLDAELRAHERSFAAE 122
Query: 187 FG 188
G
Sbjct: 123 LG 124
|
| >d1jpdx2 d.54.1.1 (X:-2-113) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Score = 47.8 bits (113), Expect = 1e-07
Identities = 20/116 (17%), Positives = 31/116 (26%), Gaps = 10/116 (8%)
Query: 73 RELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREA 132
E L P + S V + +E G G GE P + ++
Sbjct: 10 FEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYGESDASVMAQIMSV 68
Query: 133 CQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188
L + + + R ++ AL D A L L G
Sbjct: 69 VPQLEKG---------LTREELQKILPAGAARNALDCALWDLAARRQQQSLADLIG 115
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 10/123 (8%)
Query: 67 VQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKAL 126
+ R E L L P IR+ +G GWGE
Sbjct: 3 IVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPALHVGFTKR 62
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRL 186
+ + + + I + + V MAL + A + D + L
Sbjct: 63 IIPFLLGK-----QAGSRLSLVRTIQKWHQ-----RAASAVSMALTEIAAKAADCSVCEL 112
Query: 187 FGG 189
+GG
Sbjct: 113 WGG 115
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Score = 48.4 bits (114), Expect = 6e-07
Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 11/211 (5%)
Query: 195 STAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI-HAVHPHCSFIL 252
+ P + Y G++ +K+ +G I D ++A+ + +
Sbjct: 11 AGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAV 70
Query: 253 DANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADES 312
DAN + E + L D +E+ D++ ++ F
Sbjct: 71 DANGRFNLETGIAYAKMLRDY--PLFWYEEVGDPLDYALQAALAEFYPGPMATGENLFSH 128
Query: 313 CRSLNDVQKVMQENLASVVNIKLAK-FGVLGTLQIIKATRKSGLHLMID---GMIETRLA 368
+ N ++ + A +G+ + ++ + G G + L
Sbjct: 129 QDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRTLEVLKTHGWSPSRCIPHGGHQMSLN 188
Query: 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFV 399
L L G Y +L P+ D
Sbjct: 189 IAAGLGLG---GNESYPDLFQPYGGFPDGVR 216
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Score = 46.3 bits (109), Expect = 7e-07
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 20/127 (15%)
Query: 75 LNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQ 134
+ S L+L + + + S+G VG GEV + + +A
Sbjct: 13 VAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGGEGIRKT-------LEDARH 65
Query: 135 FLRQSPPTTLNFALDEIARIL-------------PGSEFASVRAGVEMALIDAVANSIDI 181
L L+++ VE AL+D + + +
Sbjct: 66 LLINQSIGNYQSLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQV 125
Query: 182 PLWRLFG 188
P+ L G
Sbjct: 126 PVAALLG 132
|
| >d1r6wa2 d.54.1.1 (A:-2-99) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} Length = 101 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Score = 45.3 bits (107), Expect = 7e-07
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 68 QRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQT-KAL 126
+ A+ + + A + L ++ + + + + GWGE++ +P + + +A
Sbjct: 4 RSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLR-EGEREGWGEISPLPGFSQETWEEAQ 62
Query: 127 VKVREACQFLRQSPPTTLNFALDEIARILPGSEFASVRAGVEMALID 173
+ + +A + SV GV AL +
Sbjct: 63 SVLLAWVN--------------NWLAGDCELPQMPSVAFGVSCALAE 95
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 139 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 45.9 bits (108), Expect = 9e-07
Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 12/107 (11%)
Query: 96 VAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEIARIL 155
+ + G V + G+ + V + + + L AR L
Sbjct: 34 AYVVLRTDGAEDLAGYGLVFTIGRGNDVQTAA-VAALAEHVVGLSVDKVIADLGAFARRL 92
Query: 156 -----------PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGGAS 191
V A D A + + PLWR +
Sbjct: 93 TNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAELT 139
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Score = 46.5 bits (109), Expect = 2e-06
Identities = 37/230 (16%), Positives = 77/230 (33%), Gaps = 12/230 (5%)
Query: 192 NSLSTAITIPAV-SPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIH-AVHPHCS 249
+S+ +++ + + + ++ Y G+ +KL + D + ++A+
Sbjct: 3 DSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGW--DVEPVRAVRERFGDDVL 60
Query: 250 FILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309
+DAN YT +A ++ ++ + + L +
Sbjct: 61 LQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEEDVLGHAEL-------ARRIQTPICL 113
Query: 310 DESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLA 368
DES S ++ +VNIK + G L ++ G+ + GMIET L
Sbjct: 114 DESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHGIPVWCGGMIETGLG 173
Query: 369 TGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418
+ LA+ + + + +SG G G
Sbjct: 174 RAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLG 223
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 42.9 bits (100), Expect = 8e-06
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 92 NVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLNFALDEI 151
VE + V +G G A +++ + + L ++
Sbjct: 32 QVEQAMLTVRTEDGQEGHSFTA-----PEIVRPHVIE-KFVKKVLIGEDHRDRERLWQDL 85
Query: 152 ARIL---PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189
A A V+ AL D S+ P+++L GG
Sbjct: 86 AHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGG 126
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Score = 44.7 bits (104), Expect = 9e-06
Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 7/197 (3%)
Query: 204 SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAI-HAVHPHCSFILDANEGYTSE 261
+ + K GF +K+ +G + D + A+ H + ILDAN+ Y +
Sbjct: 21 WISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAA 80
Query: 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321
A + ++ I L E+P+ D + + E+ +
Sbjct: 81 AAFKWERYFSEWTNIGWL-EEPLPFDQPQDYAMLRSRLSVPVAG----GENMKGPAQYVP 135
Query: 322 VMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381
++ + ++ + + + + + L+ +AL A L
Sbjct: 136 LLSQRCLDIIQPDVMHVNGIDEFRDCLQLARYFGVRASAHAYDGSLSRLYALFAQACLPP 195
Query: 382 IKYVNLNTPFLLSEDPF 398
+ + + D
Sbjct: 196 WSKMKNDHIEPIEWDVM 212
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (97), Expect = 2e-05
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 98 IRVELSNGCVGWGEVAVVPLVTG--------DQTKALVKVREACQFLRQSPPTTLNFALD 149
+ ++ ++G G GE+ + K L + + +R +
Sbjct: 37 VIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRG 96
Query: 150 EIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188
L + G+E A++D + + + + L G
Sbjct: 97 LQTFDLRTTIHV--VTGIEAAMLDLLGQHLGVNVASLLG 133
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 32/220 (14%), Positives = 69/220 (31%), Gaps = 22/220 (10%)
Query: 190 ASNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQAIH 242
S + +P + A K G+ +KL+ ++ D A+
Sbjct: 9 GSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVR 68
Query: 243 -AVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARD 301
AV P ++DA Y+ +A+ + + E+P+ + +
Sbjct: 69 EAVGPDIRLMIDAFHWYSRTDALAL--GRGLEKLGFDWIEEPMDEQSL---SSYKWLSDN 123
Query: 302 TYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKF-GVLGTLQIIKATRKSGLHLMID 360
V + + + ++ ++ + G+ L+ + G+ +
Sbjct: 124 LDIPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKTMHLAEAFGMECEVH 183
Query: 361 GMIETRLATGFALHLAAGLGCIKYVN--LNTPFLLSEDPF 398
G T LH+ A ++ L PFL +D
Sbjct: 184 GN------TAMNLHVVAATKNCRWYERGLLHPFLEYDDGH 217
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Score = 38.9 bits (89), Expect = 7e-04
Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 10/201 (4%)
Query: 204 SPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIH-AVHPHCSFILDANEGYTSE 261
A+E A +LGF +K +G + D V+++I AV ++D N+
Sbjct: 12 GVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVP 71
Query: 262 EAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQK 321
A++ L E+P + D+ G + + + +
Sbjct: 72 AAIKRSQALQQE--GVTWIEEPTLQHDYEGHQRIQ---SKLNVPVQMGENWLGPEEMFKA 126
Query: 322 VMQENLASVVNIKLAKFGVLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGC 381
+ + + GV G ++ ++ G+ + E A A
Sbjct: 127 LSIGACRLAMPDAMKIGGVTGWIRASALAQQFGIPMSSHLFQEISAHLLAATPTA---HW 183
Query: 382 IKYVNLNTPFLLSEDPFVGGC 402
++ ++L + F GG
Sbjct: 184 LERLDLAGSVIEPTLTFEGGN 204
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 438 | |||
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 100.0 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 100.0 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 100.0 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 100.0 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 100.0 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 100.0 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 100.0 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 100.0 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 100.0 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 100.0 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 100.0 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 100.0 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 100.0 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 100.0 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 100.0 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 100.0 | |
| d1r6wa1 | 221 | O-succinylbenzoate synthase {Escherichia coli [Tax | 100.0 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 99.97 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 99.95 | |
| d1jpma2 | 125 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 99.93 | |
| d1nu5a2 | 126 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 99.92 | |
| d2chra2 | 126 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 99.91 | |
| d2gdqa2 | 115 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 99.91 | |
| d1muca2 | 127 | Muconate-lactonizing enzyme (cis muconate cycloiso | 99.89 | |
| d1wufa2 | 126 | N-acylamino acid racemase {Listeria innocua [TaxId | 99.89 | |
| d2mnra2 | 130 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 99.88 | |
| d1rvka2 | 126 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 99.88 | |
| d2gl5a2 | 122 | Putative dehydratase protein STM2273 {Salmonella t | 99.87 | |
| d1wuea2 | 126 | N-acylamino acid racemase {Enterococcus faecalis [ | 99.87 | |
| d1sjda2 | 125 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 99.86 | |
| d1r0ma2 | 127 | N-acylamino acid racemase {Deinococcus radiodurans | 99.85 | |
| d1bqga2 | 132 | D-glucarate dehydratase {Pseudomonas putida [TaxId | 99.84 | |
| d1jpdx2 | 116 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 99.83 | |
| d1jdfa2 | 133 | D-glucarate dehydratase {Escherichia coli [TaxId: | 99.82 | |
| d1tzza2 | 140 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 99.79 | |
| d1yeya2 | 139 | RTS beta protein {Xanthomonas campestris pv. campe | 99.77 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 99.69 | |
| d2akza1 | 294 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 99.15 | |
| d1w6ta1 | 296 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 99.12 | |
| d2fyma1 | 292 | Enolase {Escherichia coli [TaxId: 562]} | 99.12 | |
| d2al1a1 | 295 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 99.11 | |
| d2ptza1 | 291 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 99.1 | |
| d1w6ta2 | 137 | Enolase {Streptococcus pneumoniae [TaxId: 1313]} | 98.47 | |
| d2ptza2 | 139 | Enolase {Trypanosoma brucei [TaxId: 5691]} | 98.22 | |
| d2fyma2 | 139 | Enolase {Escherichia coli [TaxId: 562]} | 98.22 | |
| d2al1a2 | 141 | Enolase {Baker's yeast (Saccharomyces cerevisiae) | 97.81 | |
| d1pdza2 | 139 | Enolase {European lobster (Homarus vulgaris) [TaxI | 97.61 | |
| d2akza2 | 139 | Enolase {Human (Homo sapiens), gamma isoform [TaxI | 97.5 | |
| d1kcza2 | 160 | beta-Methylaspartase {Clostridium tetanomorphum [T | 96.95 | |
| d1kkoa2 | 160 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 96.93 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 96.88 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 96.48 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 95.98 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 95.64 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 93.71 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 91.71 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 91.09 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 91.07 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 91.04 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 87.71 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 86.81 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 86.72 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 86.39 | |
| d1r6wa2 | 101 | O-succinylbenzoate synthase {Escherichia coli [Tax | 86.08 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 86.02 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 82.54 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 81.88 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 81.57 |
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=4.5e-49 Score=374.59 Aligned_cols=234 Identities=22% Similarity=0.262 Sum_probs=218.1
Q ss_pred CCceeeeeeeCCCCHHHHHHHHHHHh-hcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHH
Q 013681 191 SNSLSTAITIPAVSPAEASELASKYC-KLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVL 267 (438)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~~~~~~~~~-~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l 267 (438)
+++||+|++++..+++++.+++.+.+ ++||++||+|+|. ++++|++++++||+ .++++.|+||||++|++++|++++
T Consensus 3 rd~ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (242)
T d1muca1 3 RDSLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGANPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRAC 82 (242)
T ss_dssp CSEEEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHH
T ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCCcHHHHHHHH
Confidence 68999999999999988866665544 5899999999996 68999999999999 579999999999999999999999
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHH
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~ 346 (438)
+.|+++++ .|||||++++|++++++|++ ++++||++||++.+..++.++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (242)
T d1muca1 83 QVLGDNGI--DLIEQPISRINRGGQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT 156 (242)
T ss_dssp HHHHHTTC--CCEECCBCTTCHHHHHHHHH----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHhhhhhH--HHhhcchhhhhhhhhhhhhh----hhhheeecccccccccchhhhhhcccccccccccccchhHHHHHHH
Confidence 99999997 49999999999999999986 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee-ecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhh
Q 013681 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (438)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~-e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~ 425 (438)
+++|+++|+++++|++++++|+++|++|+++++++..+. +++++..+.++++++++.++||++.+|++||||+++|+|+
T Consensus 157 ~~~A~~~gi~~~~~~~~~~~i~~~a~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGi~~d~d~ 236 (242)
T d1muca1 157 AQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIVNEPPQYRDFQLHIPRTPGLGLTLDEQR 236 (242)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTCSCCTTCBCCCGGGGBSSCSBSSCCEEETTEEECCCCSBTSCCBCHHH
T ss_pred HHHHHhCCCCcccccccccccchhhhhhHHhhccccccccccCchhhhhhhhccCCCeEECCEEECCCCCCCCeEECHHH
Confidence 999999999999999999999999999999999988766 5677788888899999999999999999999999999999
Q ss_pred hhhcc
Q 013681 426 VSCTQ 430 (438)
Q Consensus 426 l~~~~ 430 (438)
+++|+
T Consensus 237 l~~y~ 241 (242)
T d1muca1 237 LARFA 241 (242)
T ss_dssp HHHHB
T ss_pred HHHhc
Confidence 99996
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=100.00 E-value=1.2e-48 Score=372.23 Aligned_cols=234 Identities=21% Similarity=0.298 Sum_probs=215.8
Q ss_pred CCceeeeeeeCCCCHHHH-HHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHH
Q 013681 191 SNSLSTAITIPAVSPAEA-SELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVL 267 (438)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~-~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l 267 (438)
|++||+|++++..+++++ .+.++.+.++||++||+|||. ++++|+++|++||+ .++++.|+||+|++|++++|++++
T Consensus 3 r~~vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~~D~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (244)
T d2chra1 3 RSAIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYI 82 (244)
T ss_dssp CSEEEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHH
T ss_pred CCcEEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEeCCCCcchHHHHHHH
Confidence 578999999988777665 555566777899999999985 89999999999999 579999999999999999999999
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHH
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~ 346 (438)
++|+++++ .|+|||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| +++++++
T Consensus 83 ~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i 156 (244)
T d2chra1 83 PELEALGV--ELIEQPVGRENTQALRRLSD----NNRVAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKI 156 (244)
T ss_dssp HHHHTTTC--CEEECCSCSSCHHHHHHHHH----HCSSEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTSHHHHHHH
T ss_pred HHHhhhhH--HHHhhhhhhccchhhhhhcc----ceeeeeeecccccccchhhhhhhcceeEEEeeccccccchHHHHHH
Confidence 99999997 59999999999999999986 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee-ecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhh
Q 013681 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (438)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~-e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~ 425 (438)
+++|+++|+++++|++++++|+++|++|+++++++..+. ++.+++.+.++++.+++.++||++.+|++||||+++|+++
T Consensus 157 ~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~ 236 (244)
T d2chra1 157 AAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDK 236 (244)
T ss_dssp HHHHHHHTCEECCCCCSCCHHHHHHHHHHHTTSSCCTTCBCCCHHHHBSCCSBSCCCCBCSSEEECCCSSSTTCCBCHHH
T ss_pred HHHHHHcCCCeeeccccccccchhHHHHHHHhCCCCcceeccCchhhhhhhcccCCceeECCEEECCCCCCCCeEECHHH
Confidence 999999999999999999999999999999999987664 5666777778888888899999999999999999999999
Q ss_pred hhhcc
Q 013681 426 VSCTQ 430 (438)
Q Consensus 426 l~~~~ 430 (438)
|++|+
T Consensus 237 l~~~~ 241 (244)
T d2chra1 237 VRQYA 241 (244)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99997
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=100.00 E-value=2.4e-48 Score=369.75 Aligned_cols=235 Identities=23% Similarity=0.343 Sum_probs=216.1
Q ss_pred CCceeeeeeeCCCCHHHHHH-HHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHH
Q 013681 191 SNSLSTAITIPAVSPAEASE-LASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVL 267 (438)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~~~-~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l 267 (438)
|++||+|++++..++++..+ .++++.++||++||+|+|. ++++|+++++++|+ +++++.|++|||++|++++|++++
T Consensus 3 R~~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~~~~~~Di~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~ 82 (243)
T d1nu5a1 3 RTSIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWI 82 (243)
T ss_dssp CSEEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHH
T ss_pred CCceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCCCCHHHHHHHHHHHHHHhCcccceEEECCCCccchhHHHHH
Confidence 67899999988877766644 4566667899999999985 89999999999999 579999999999999999999999
Q ss_pred HHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHH
Q 013681 268 GKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQI 346 (438)
Q Consensus 268 ~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~ 346 (438)
++|+++++ .|+|||++++|++++++|++ ++++||++||++.+..++.++++.+++|++++|++++| +++++++
T Consensus 83 ~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~i 156 (243)
T d1nu5a1 83 PRLEEAGV--ELVEQPVPRANFGALRRLTE----QNGVAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKV 156 (243)
T ss_dssp HHHHHHTC--CEEECCSCTTCHHHHHHHHH----HCSSEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred HHhcchhh--hhhhhhhhhccccccccchh----ccccccccccccccchhhhhccccccccccccccccccchHHHHHH
Confidence 99999997 49999999999999999986 68999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee-ecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhh
Q 013681 347 IKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTI 425 (438)
Q Consensus 347 ~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~-e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~ 425 (438)
+++|+++|+++++|++++|+|++++++|+++++++..+. ++.+++...++++.+++.++||++.+|++||||+++|+|+
T Consensus 157 ~~~a~~~gi~~~~~~~~~s~i~~~a~~h~~aa~p~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGv~~d~d~ 236 (243)
T d1nu5a1 157 AAVAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGCELIGPWVLGDRLTQQDLEIKDFEVHLPLGSGLGVDLDHDK 236 (243)
T ss_dssp HHHHHHHTCEEEECCSSCCHHHHHHHHHHHTTSSCCTTCBCCCHHHHBSSCSBSSCCCEETTEEECCCSSBTSCCBCHHH
T ss_pred HHHHHHcCCCcccccccchhhhHHHHHHHHHhCCCCceeeecCchHHhhhhcccCCCeEECCEEECCCCCCcCeeECHHH
Confidence 999999999999999999999999999999999998764 5666666777888888999999999999999999999999
Q ss_pred hhhccc
Q 013681 426 VSCTQV 431 (438)
Q Consensus 426 l~~~~~ 431 (438)
|++|+.
T Consensus 237 l~~y~~ 242 (243)
T d1nu5a1 237 VRHYTR 242 (243)
T ss_dssp HHHHBC
T ss_pred HHHHhc
Confidence 999974
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=100.00 E-value=3.2e-47 Score=362.03 Aligned_cols=234 Identities=20% Similarity=0.330 Sum_probs=216.0
Q ss_pred CCceeeeeeeCC-CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 013681 191 SNSLSTAITIPA-VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK 269 (438)
Q Consensus 191 ~~~ip~~~~i~~-~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~ 269 (438)
+++||+|+++++ .|++++.+++++++++||++||+|+|+ ++|+++++++|+..|+++||+|+|++|+.++|+ ++++
T Consensus 2 r~~i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~--~~D~~~v~~ir~~~~~~~l~vDaN~~~~~~~a~-~~~~ 78 (244)
T d1wufa1 2 KESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP--NKDIQFVEAVRKSFPKLSLMADANSAYNREDFL-LLKE 78 (244)
T ss_dssp CSEEEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT--TBSHHHHHHHHTTCTTSEEEEECTTCCCGGGHH-HHHT
T ss_pred CCeEEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC--cHHHHHHHHHHHhccchhhhhhhhccccchhhh-hhhc
Confidence 689999999987 589999999999999999999999997 568999999999888999999999999999997 6799
Q ss_pred hhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHH
Q 013681 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (438)
Q Consensus 270 L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~ 348 (438)
|+++++ .|||||++++|++++++|++ ++++||++||++.+..++.++++.+++|++|+|++++| +++++++++
T Consensus 79 l~~~~~--~wiEeP~~~~d~~~~~~l~~----~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ki~~ 152 (244)
T d1wufa1 79 LDQYDL--EMIEQPFGTKDFVDHAWLQK----QLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAE 152 (244)
T ss_dssp TGGGTC--SEEECCSCSSCSHHHHHHHT----TCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHHHHHHHHH
T ss_pred ccccch--hhhcCcccccchhhhhcccc----ccccccccCccccchhhhhhhccccccceeecccccccchhhHHHHHH
Confidence 999997 59999999999999999985 78999999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCC-CcccccCCCCCceeeeCcEEecCCCCCccceeChhhhh
Q 013681 349 ATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT-PFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427 (438)
Q Consensus 349 ~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~-pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~ 427 (438)
+|+++|+++++|++++++++.++++|+++..++..+.+++. +..+.++++.+++.++||++.+|++||||+++|+++|+
T Consensus 153 ~a~~~gi~v~~h~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~i~~p~~pGLGie~d~~~l~ 232 (244)
T d1wufa1 153 YCALNEILVWCGGMLEAGVGRAHNIALAARNEFVFPGDISASNRFFAEDIVTPAFELNQGRLKVPTNEGIGVTLDLKVLK 232 (244)
T ss_dssp HHHHTTCEEEECCCCCCHHHHHHHHHHHTSSSCCSCBSCCCGGGTBSSCSBSSCCCCCSSEEECCCSSBTSCCBCHHHHH
T ss_pred HHHHcCCEEecCCCCCccHHHHHHHHHHhccCccchhhhcccchhhhhhccCCCceEECCEEECCCCCCcCeeECHHHHH
Confidence 99999999999999999999999999999888766556553 34566778888899999999999999999999999999
Q ss_pred hccccc
Q 013681 428 CTQVDC 433 (438)
Q Consensus 428 ~~~~~~ 433 (438)
+|+++.
T Consensus 233 ~~~~~~ 238 (244)
T d1wufa1 233 KYTKST 238 (244)
T ss_dssp TTEEEE
T ss_pred HhhCCc
Confidence 999764
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=100.00 E-value=1.1e-46 Score=357.68 Aligned_cols=233 Identities=19% Similarity=0.262 Sum_probs=212.1
Q ss_pred CCceeeeeeeCC-CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHH
Q 013681 191 SNSLSTAITIPA-VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLG 268 (438)
Q Consensus 191 ~~~ip~~~~i~~-~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (438)
|++||+|++++. .+++++.+++++++++||++||+|+|. ++|+++++++|+ ++++++||+|+|++|++++|+++.
T Consensus 2 R~~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~--~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~- 78 (242)
T d1sjda1 2 RDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEP--GWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLA- 78 (242)
T ss_dssp CSEEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECBT--TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHH-
T ss_pred CCeeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCc--hhHHHHHHHHHHHhCCCeeEeeccccccchhhhhHHh-
Confidence 578999999986 589999999999999999999999986 689999999999 589999999999999999999876
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHH
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~ 347 (438)
+|+++++ .|||||++++|++++++|++ ++++||++||++.+..++.++++.+++|++|+|++++| ++++++++
T Consensus 79 ~l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~~pia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~ 152 (242)
T d1sjda1 79 RLDPFGL--LLIEQPLEEEDVLGHAELAR----RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVH 152 (242)
T ss_dssp TTGGGCC--SEEECCSCTTCHHHHHHHHT----TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHHH
T ss_pred hhhhhhh--HHHHhhhhhhhHHHHHHHHh----ccCcccccccccccchhhhhhhhcCccCEEEeccccCccchhhhHHH
Confidence 4999997 59999999999999999985 78999999999999999999999999999999999998 99999999
Q ss_pred HHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhh
Q 013681 348 KATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427 (438)
Q Consensus 348 ~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~ 427 (438)
++|+++|+++++|+++++++++++++|+++........+...+..+.++.+++++.++||++.+|++||||+++|+++|+
T Consensus 153 ~~A~~~~i~~~~h~~~~~~i~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGLGie~d~~~l~ 232 (242)
T d1sjda1 153 DVCAAHGIPVWCGGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSGGHLPVPTGPGLGVAPIPELLD 232 (242)
T ss_dssp HHHHHTTCCEEECCCCCCHHHHHHHHHHHTSTTBCSCBSCCCGGGTCSSCSSSCCCCSSSEEECCCSSBTSCCCCHHHHH
T ss_pred HHHHHCCCEEeecccccchhHHHHHHHHhhccccccccccccchhhhHhhccCCCeEECCEEECCCCCCCcEEECHHHHH
Confidence 99999999999999999999999999997655444344566665555666778888999999999999999999999999
Q ss_pred hcccc
Q 013681 428 CTQVD 432 (438)
Q Consensus 428 ~~~~~ 432 (438)
+|++.
T Consensus 233 ~~~~~ 237 (242)
T d1sjda1 233 EVTTA 237 (242)
T ss_dssp HHEEE
T ss_pred HhhcC
Confidence 99865
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.1e-46 Score=354.15 Aligned_cols=226 Identities=35% Similarity=0.541 Sum_probs=215.0
Q ss_pred CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHH
Q 013681 191 SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLG 268 (438)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~ 268 (438)
+++||+++++++++|+++.+++++++++||++||+|+|. ++++|++++++||+ +++++.|+||+|++|++++|+++++
T Consensus 2 r~~v~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~~~~~d~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~~~ 81 (234)
T d1jpma1 2 RDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIR 81 (234)
T ss_dssp CSEEEBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHH
T ss_pred CCcceEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCchhhhhhhcccccchHHHHHHHH
Confidence 578999999999999999999999999999999999996 89999999999999 6899999999999999999999999
Q ss_pred HhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHH
Q 013681 269 KLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQII 347 (438)
Q Consensus 269 ~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~ 347 (438)
.|+++++.+.|+|||++++|++++++|++ ++++||++||++.+..++.++++.+++|++++|++++| ++++++++
T Consensus 82 ~le~~~~~i~~~EeP~~~~d~~~~~~l~~----~~~~pia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~ 157 (234)
T d1jpma1 82 KMEDAGLGIELVEQPVHKDDLAGLKKVTD----ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKIN 157 (234)
T ss_dssp HHHHTTCCEEEEECCSCTTCHHHHHHHHH----HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHH
T ss_pred HHHhccCceeeecCCccccCHHHHHHhhc----cccceeecccccccchhhhhhhccCCcCeEEEeeecCCCHHHHHHHH
Confidence 99986555579999999999999999986 68999999999999999999999999999999999997 99999999
Q ss_pred HHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccce
Q 013681 348 KATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGF 420 (438)
Q Consensus 348 ~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 420 (438)
++|+++|+++++|++++++|++++++|+++++++..++|+++|..+.++.+.++++++||++.+|++||||+.
T Consensus 158 ~~a~~~g~~~~~~~~~~~~i~~~a~~~~aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~~p~~pGLGi~ 230 (234)
T d1jpma1 158 AMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGII 230 (234)
T ss_dssp HHHHHTTCCEEECCSSCCHHHHHHHHHHHHHCTTEEEECCCGGGGBSSCCEEESCEEETTEEECCCSSBTCEE
T ss_pred HHHHhcCeeEeecccccCCchHHHHHHHHHhccCCceeecCCchhhhhhccCCCceEECCEEECCCCCeeeeE
Confidence 9999999999999999999999999999999999999999999888888888899999999999999999984
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=3.5e-46 Score=354.62 Aligned_cols=234 Identities=18% Similarity=0.279 Sum_probs=214.3
Q ss_pred CCceeeeeeeCC-CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 013681 191 SNSLSTAITIPA-VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK 269 (438)
Q Consensus 191 ~~~ip~~~~i~~-~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~ 269 (438)
+++||+|.+++. .+++++.+.+++++++||++||+|+|. +.|+++++++|+..+++.|+||+|++||+++|+++ +.
T Consensus 2 r~~v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg~--~~D~~~v~~ir~~~~d~~l~vD~n~~~~~~~a~~~-~~ 78 (243)
T d1r0ma1 2 KEQVEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIKP--GWDVQPVRATREAFPDIRLTVDANSAYTLADAGRL-RQ 78 (243)
T ss_dssp CSEEEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHH-HT
T ss_pred CCEEEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcCc--chhHHHHHHHHHhccCceEEEeccccCchHHHHHh-hh
Confidence 578999999886 478889999999999999999999997 46999999999987899999999999999999875 89
Q ss_pred hhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHH
Q 013681 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (438)
Q Consensus 270 L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~ 348 (438)
|+++++ .|||||++++|++++++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| +++++++++
T Consensus 79 l~~~~~--~~iEeP~~~~d~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~~d~~~~GGit~~~~i~~ 152 (243)
T d1r0ma1 79 LDEYDL--TYIEQPLAWDDLVDHAELAR----RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHAESRRVHD 152 (243)
T ss_dssp TGGGCC--SCEECCSCTTCSHHHHHHHH----HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHHHH
T ss_pred hhhccc--hhhhhhccccchHHHHHHhh----cCCcccccccchhhhhhhhhhhhcccccceecccceeccHHHHHHHHH
Confidence 999997 49999999999999999986 68999999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecC-CCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhh
Q 013681 349 ATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN-TPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427 (438)
Q Consensus 349 ~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~-~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~ 427 (438)
+|+++|+++++|++++++++++|++|++++.++..+.+.. .+..+.++++.+++.++||++.+|++||||+++|+++|+
T Consensus 153 ~A~~~gi~v~~h~~~~~~i~~~a~~h~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~~p~~pGlGie~d~~~l~ 232 (243)
T d1r0ma1 153 VAQSFGAPVWCGGMLESGIGRAHNIHLSTLSNFRLPGDTSSASRYWERDLIQEPLEAVDGLMPVPQGPGTGVTLDREFLA 232 (243)
T ss_dssp HHHHTTCCEEECCCCCCHHHHHHHHHHTTSTTBCSCBSCCCGGGTBSSCSBSSCCCCBTTEEECCCSSBTSCCBCHHHHH
T ss_pred HHHHCCCceecccccccchhhhHHHHHHhhccccccccccccchhhhhhhcCCCCeeECCEEECCCCCCCcEeECHHHHH
Confidence 9999999999999999999999999999988876665544 345566778888899999999999999999999999999
Q ss_pred hccccc
Q 013681 428 CTQVDC 433 (438)
Q Consensus 428 ~~~~~~ 433 (438)
+|+...
T Consensus 233 ~~~~~~ 238 (243)
T d1r0ma1 233 TVTEAQ 238 (243)
T ss_dssp HTEEEE
T ss_pred HHHHHH
Confidence 998653
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=100.00 E-value=4.8e-46 Score=353.07 Aligned_cols=232 Identities=18% Similarity=0.268 Sum_probs=211.6
Q ss_pred CCceeeeeeeCC-CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHH
Q 013681 191 SNSLSTAITIPA-VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGK 269 (438)
Q Consensus 191 ~~~ip~~~~i~~-~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~ 269 (438)
+++||+|.++++ .+++++.+++++++++||++||+|+|+ ++|++++++||+.++++.|+||+|++|+.++|+++ .+
T Consensus 2 r~~ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg~--~~D~~~v~~ir~~~~d~~l~vDaN~~~~~~~a~~~-~~ 78 (241)
T d1wuea1 2 RRKIPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIRP--GYDVEPVALIRQHFPNLPLMVDANSAYTLADLPQL-QR 78 (241)
T ss_dssp CSEEECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECBT--TBSHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHH-HG
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcCc--cHHHHHHHHHHHhccccceeecccccCCHHHhhhh-hh
Confidence 678999999877 488999999999999999999999997 56899999999988999999999999999999875 67
Q ss_pred hhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHH
Q 013681 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (438)
Q Consensus 270 L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~ 348 (438)
+.++++ .|||||++.+|++++++|++ ++++|||+||++.+..+++++++.+++|++|+|++++| +++++++++
T Consensus 79 ~~~~~i--~~iEeP~~~~~~~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~~~~GGit~~~~i~~ 152 (241)
T d1wuea1 79 LDHYQL--AMIEQPFAADDFLDHAQLQR----ELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEALKIAA 152 (241)
T ss_dssp GGGSCC--SCEECCSCTTCSHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHH
T ss_pred hhhhhh--hhhcCcccccchhhhhhhhc----ccccccccCcccccchhhhhhhhhhhhhhhccccccccCcHHHHHHHH
Confidence 888987 59999999999999999985 78999999999999999999999999999999999997 999999999
Q ss_pred HHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCC-cccccCCCCCceeeeCcEEecCCCCCccceeChhhhh
Q 013681 349 ATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVS 427 (438)
Q Consensus 349 ~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~p-l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~ 427 (438)
+|+++|+++++|++++++++++|++|+++..++....+++.+ ..+.++++.+++.++||++.+|++||||+++|+++|+
T Consensus 153 ~a~~~~i~v~~~~~~~~~i~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~p~~pGlGi~~d~~~l~ 232 (241)
T d1wuea1 153 FCQENDLLVWLGGMFESGVGRALNLQFASQPTFSFPGDISATERYFYEDIITEPFILEQGTMTVPQGLGIGVTLSQTNLL 232 (241)
T ss_dssp HHHHTTCEEEECCCCCCHHHHHHHHHHHTSTTCCSCCSCCCGGGTBSCCSBSSCCCEETTEEECCCSSBTCCCBCHHHHH
T ss_pred HHHHcCCEEEecccccccccccchhhhccccccccccccccccchhhhhccCCCCeEECCEEECCCCCCCceEECHHHHH
Confidence 999999999999999999999999999887766555566553 3356678888899999999999999999999999999
Q ss_pred hccc
Q 013681 428 CTQV 431 (438)
Q Consensus 428 ~~~~ 431 (438)
+|+.
T Consensus 233 ky~~ 236 (241)
T d1wuea1 233 KYSQ 236 (241)
T ss_dssp HHEE
T ss_pred HHHH
Confidence 9975
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=7.6e-46 Score=355.07 Aligned_cols=235 Identities=15% Similarity=0.220 Sum_probs=208.2
Q ss_pred CCceeeeeeeCC--CC---HHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHH
Q 013681 191 SNSLSTAITIPA--VS---PAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEA 263 (438)
Q Consensus 191 ~~~ip~~~~i~~--~~---~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A 263 (438)
|++||+|.+++. ++ .+++.+++++++++||++||+|+|. ++++|+++|++||+ +|+++.|+||||++|++++|
T Consensus 3 Rd~ip~Yas~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~avr~~~G~~~~l~vDan~~~~~~~A 82 (256)
T d2gdqa1 3 REEIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAA 82 (256)
T ss_dssp CSEEEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHH
T ss_pred CCeEEeCeecCcCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEeeccccCCCHHHH
Confidence 689999998754 22 4566788889899999999999985 89999999999999 68999999999999999999
Q ss_pred HHHHHHhhhC-CCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HH
Q 013681 264 VEVLGKLNDM-GVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VL 341 (438)
Q Consensus 264 ~~~l~~L~~~-~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~ 341 (438)
+++++.|+++ ++ .|+|||++++|++++++|++ ++++||++||++.+..+++++++.+++|++|+|++++| ++
T Consensus 83 ~~~~~~l~~~~~i--~~~EeP~~~~d~~~~~~l~~----~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit 156 (256)
T d2gdqa1 83 FKWERYFSEWTNI--GWLEEPLPFDQPQDYAMLRS----RLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGID 156 (256)
T ss_dssp HTTHHHHTTCSCE--EEEECCSCSSCHHHHHHHHT----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred HHHHHHHhhcCce--eEeccccccchHHHHHHHhh----cccceeecCccccchhhHHHHHHhhcceeeeccccccccHH
Confidence 9999999996 44 69999999999999999985 79999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccc----cCCCC--CceeeeCcEEecCCCC
Q 013681 342 GTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLS----EDPFV--GGCEVSGAIYNFTNAR 415 (438)
Q Consensus 342 ~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~----~~~~~--~~~~~~~G~~~~p~~p 415 (438)
++++++++|+++|+++++|+ ++++++.++++|+++++++..+++...+..+. ..++. ..+.++||++.+|++|
T Consensus 157 ~~~~i~~~a~~~~i~v~~h~-~~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~p 235 (256)
T d2gdqa1 157 EFRDCLQLARYFGVRASAHA-YDGSLSRLYALFAQACLPPWSKMKNDHIEPIEWDVMENPFTDLVSLQPSKGMVHIPKGK 235 (256)
T ss_dssp HHHHHHHHHHHHTCEECCCC-SSCSHHHHHHHHHHHTSCCSSSCTTSCSCCEEEECSSCGGGGGBCCCCBTTEEECCCSS
T ss_pred HHHHHHHHHhhhcccccccc-cccccchHHHHHHHHhCccchhhccccccceeeccccccccccCCceeeCCEEECCCCC
Confidence 99999999999999999996 57899999999999999998777654432222 22222 2457899999999999
Q ss_pred CccceeChhhhhhcccc
Q 013681 416 GQGGFLKWTIVSCTQVD 432 (438)
Q Consensus 416 GlGv~ld~~~l~~~~~~ 432 (438)
|||+++|+++|++|+++
T Consensus 236 GLGieid~~~l~~y~~~ 252 (256)
T d2gdqa1 236 GIGTEINMEIVNRYKWD 252 (256)
T ss_dssp BTSSCBCHHHHHHTBCC
T ss_pred CCCeEeCHHHHhhCCCC
Confidence 99999999999999987
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.7e-45 Score=356.74 Aligned_cols=233 Identities=15% Similarity=0.181 Sum_probs=211.5
Q ss_pred CCceeeeeee----------CCCCHHHHHHHHHHHhhcCCcEEEEecCC------------------------CchHHHH
Q 013681 191 SNSLSTAITI----------PAVSPAEASELASKYCKLGFSTLKLNVGR------------------------NITADFD 236 (438)
Q Consensus 191 ~~~ip~~~~i----------~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~------------------------d~~~di~ 236 (438)
+++|++|++. ...+|+++.+.+++++++||+++|++++. +++.|++
T Consensus 3 ~dki~~YAs~~~~~~~~~~~~~~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~ 82 (278)
T d2gl5a1 3 NEKLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEA 82 (278)
T ss_dssp CSSEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHH
T ss_pred CCceeccccCCcCCCCcccccCCCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHH
Confidence 6899999884 12489999999999999999999998652 2578999
Q ss_pred HHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCC
Q 013681 237 VLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRS 315 (438)
Q Consensus 237 ~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~ 315 (438)
+|++||+ +|++++|++|+|++|+.++|++++++|+++++ .|+|||++++|++++++|++ ++++|||+||++.+
T Consensus 83 ~v~aiRe~vG~~~~l~vDan~~~~~~~Ai~~~~~L~~~~l--~wiEePi~~~d~~~~~~L~~----~~~ipIa~gE~~~~ 156 (278)
T d2gl5a1 83 RIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRI--FLYEEPIHPLNSDNMQKVSR----STTIPIATGERSYT 156 (278)
T ss_dssp HHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCE--EEEECSSCSSCHHHHHHHHH----HCSSCEEECTTCCT
T ss_pred HHHHHHHHhccccceeecccccccchhhHHHHHHhccccc--ceecccccccchhhhhhhcc----ccccceecccccCC
Confidence 9999999 68999999999999999999999999999997 59999999999999999986 68999999999999
Q ss_pred HHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCC-Cc-c
Q 013681 316 LNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNT-PF-L 392 (438)
Q Consensus 316 ~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~-pl-~ 392 (438)
..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++|+++|++|++++++|..+.|... +. .
T Consensus 157 ~~~~~~~i~~~a~di~~~d~~~~GGit~~~kia~la~~~gi~v~~H~-~~~~i~~~a~~hl~aa~~n~~~~e~~~~~~~~ 235 (278)
T d2gl5a1 157 RWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVHV-CGGPVSTVAALHMETAIPNFIIHEHHTNAMKA 235 (278)
T ss_dssp THHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCCC-CSSHHHHHHHHHHHHHCTTBCCEEEETTTTCH
T ss_pred hHHHhhhhccccceeEeeccccccchhhHHHhhhhhhhhcccccccc-ccCchhhhhhhhhhhccCceeeeeccccchhh
Confidence 999999999999999999999997 9999999999999999999997 589999999999999999988877543 22 2
Q ss_pred cccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcc
Q 013681 393 LSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 393 ~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
...+++++++.++||++.+|++||||+++|++++++|.
T Consensus 236 ~~~~l~~~~~~~~~G~~~~p~~PGLGie~de~~l~~y~ 273 (278)
T d2gl5a1 236 SIRELCTHDYQPENGYYVAPEQPGLGQELNDEVVKEYL 273 (278)
T ss_dssp HHHTTBSSCCCCBTTEECCCCSSBTSCCBCHHHHTTTE
T ss_pred hHHhhccCCCeeeCCEEECCCCCCCceeeCHHHHhhcc
Confidence 33567888899999999999999999999999999985
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=100.00 E-value=1.5e-44 Score=339.98 Aligned_cols=223 Identities=17% Similarity=0.213 Sum_probs=205.4
Q ss_pred eeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHHhh
Q 013681 194 LSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGKLN 271 (438)
Q Consensus 194 ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~L~ 271 (438)
++.|.+.++++++.+.+.+++++++||++||+|+|. ++++|++++++||+ .++++.|+||+|++|++++|++++++|+
T Consensus 2 ~~ay~~~~~d~~~~~~e~~~~~~~~G~~~~KikvG~~~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~ 81 (227)
T d2mnra1 2 VQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQ 81 (227)
T ss_dssp EEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHH
T ss_pred ceeeccCCCCcHHHHHHHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhh
Confidence 667888888889999999999999999999999995 78999999999999 5799999999999999999999999999
Q ss_pred hCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHH
Q 013681 272 DMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKAT 350 (438)
Q Consensus 272 ~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A 350 (438)
++++ .|||||+++++++++++|++ ++++|||+||++.+..++.++++.+++|++|+|++++| ++++++++++|
T Consensus 82 ~~~~--~~iEeP~~~~~~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGit~~~~i~~~a 155 (227)
T d2mnra1 82 QEGV--TWIEEPTLQHDYEGHQRIQS----KLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRASALA 155 (227)
T ss_dssp HHTC--SEEECCSCTTCHHHHHHHHH----TCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHHHHHH
T ss_pred hchh--hhhcCcccccchhhhHHHHH----HcCCccccCceeEeechhhhhHhcCceeeeecccccccchhhHHHHHHHH
Confidence 9997 59999999999999999986 78999999999999999999999999999999999997 99999999999
Q ss_pred HHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcc
Q 013681 351 RKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 351 ~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
+++|+++++|++. .+++|+++++++..++|.. .+.++++.+++.++||++.+|++||||+++|+++|++|+
T Consensus 156 ~~~g~~~~~h~~~------~~~~hl~aa~~~~~~~e~~---~~~~~~~~~~~~i~~G~~~~p~~pGlGie~d~~~l~ky~ 226 (227)
T d2mnra1 156 QQFGIPMSSHLFQ------EISAHLLAATPTAHWLERL---DLAGSVIEPTLTFEGGNAVIPDLPGVGIIWREKEIGKYL 226 (227)
T ss_dssp HHHTCCBCCBSCH------HHHHHHHHTCTTBCCEEEC---CSSGGGBCCCSEEETTEEECCSSSBTCCCBCHHHHHHHB
T ss_pred HHcCCcccccchh------hhhhhhhhcCCccceeecc---cCchhhcCCCceeECCEEECCCCCCCCEEECHHHHhhCc
Confidence 9999999998753 4678999999998887743 344567778889999999999999999999999999998
Q ss_pred c
Q 013681 431 V 431 (438)
Q Consensus 431 ~ 431 (438)
|
T Consensus 227 v 227 (227)
T d2mnra1 227 V 227 (227)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=3.1e-44 Score=343.39 Aligned_cols=229 Identities=17% Similarity=0.298 Sum_probs=198.8
Q ss_pred CCceeeeeeeC--------CCCHHHHHHHHHHHhhcCCcEEEEecCC-------CchHHHHHHHHHHh-hCCCcEEEEeC
Q 013681 191 SNSLSTAITIP--------AVSPAEASELASKYCKLGFSTLKLNVGR-------NITADFDVLQAIHA-VHPHCSFILDA 254 (438)
Q Consensus 191 ~~~ip~~~~i~--------~~~~~~~~~~~~~~~~~Gf~~iKlKvG~-------d~~~di~~l~aiR~-~~~~~~L~vDA 254 (438)
|++||+|.+.. ..+|+++.+.+++++++||++||+|+|. ++++|+++|++||+ .|+++.|+|||
T Consensus 2 Rd~i~~Yas~~~~~~~~~~~~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~~d~~~v~avR~~~G~~~~l~vDa 81 (255)
T d1rvka1 2 RDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDA 81 (255)
T ss_dssp CSEEEEEEEECCCCCCTTTTSSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCeeEeceeecCCCccccCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCccccccCHHHHHHHHHHHHHHcCCccceeccc
Confidence 67899998864 3479999999999999999999999983 58999999999999 58999999999
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHH-HHHHHHHcCCccEEEe
Q 013681 255 NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLN-DVQKVMQENLASVVNI 333 (438)
Q Consensus 255 N~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~-d~~~ll~~~a~d~i~l 333 (438)
|++|++++|++++++|+++++ .|||||++++|+++|++|++ ++++||++||++.+.. +++++++.+++|++|+
T Consensus 82 N~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~l~~----~~~~pI~~~E~~~~~~~~~~~~i~~~~~dii~~ 155 (255)
T d1rvka1 82 FHWYSRTDALALGRGLEKLGF--DWIEEPMDEQSLSSYKWLSD----NLDIPVVGPESAAGKHWHRAEWIKAGACDILRT 155 (255)
T ss_dssp CTTCCHHHHHHHHHHHHTTTC--SEEECCSCTTCHHHHHHHHH----HCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEE
T ss_pred ccccccchhhhhhhhcccchh--hhhcCCcccccHHHHHHHHH----hcccceeehhhcccchhhhhhhhhhchhhhccc
Confidence 999999999999999999997 59999999999999999986 6899999999999986 5688999999999999
Q ss_pred cCCcch-HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecC--CCccc----ccC-CCCCceeee
Q 013681 334 KLAKFG-VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLN--TPFLL----SED-PFVGGCEVS 405 (438)
Q Consensus 334 k~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~--~pl~~----~~~-~~~~~~~~~ 405 (438)
|++++| ++++++++++|+++|+++++|++.+ +++|+++++++..+++.. .|... .+. .....+.++
T Consensus 156 d~~~~GGit~~~~i~~~a~~~gi~v~~h~~~~------~~~hl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 229 (255)
T d1rvka1 156 GVNDVGGITPALKTMHLAEAFGMECEVHGNTA------MNLHVVAATKNCRWYERGLLHPFLEYDDGHDYLKSLSDPMDR 229 (255)
T ss_dssp CHHHHTSHHHHHHHHHHHHHTTCCEEECCCSH------HHHHHHHHCSSCCCEEEEEECTTSCGGGCCTTBSSCSSCBCT
T ss_pred cccccccchHHHHHHHHHHHhccceeccccch------hHHHHHHHhhhhhhcccccccccccccchhhhhhccCCCeee
Confidence 999998 9999999999999999999999753 567888888887765422 22111 111 112334579
Q ss_pred CcEEecCCCCCccceeChhhhhhccc
Q 013681 406 GAIYNFTNARGQGGFLKWTIVSCTQV 431 (438)
Q Consensus 406 ~G~~~~p~~pGlGv~ld~~~l~~~~~ 431 (438)
||++.+|++||||+++|+++|++|+|
T Consensus 230 ~G~i~vp~~PGLGieid~~~l~~y~V 255 (255)
T d1rvka1 230 DGFVHVPDRPGLGEDIDFTFIDNNRV 255 (255)
T ss_dssp TSEEECCSCSBTCCCBCHHHHHHTBC
T ss_pred CCEEECCCCCCCCeeECHHHHhhCcC
Confidence 99999999999999999999999986
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=100.00 E-value=4.2e-44 Score=342.09 Aligned_cols=236 Identities=18% Similarity=0.204 Sum_probs=201.1
Q ss_pred eeeeeeeC--C-CCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHHHHHHH
Q 013681 194 LSTAITIP--A-VSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAVEVLGK 269 (438)
Q Consensus 194 ip~~~~i~--~-~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~~~l~~ 269 (438)
+|+|.+.+ . .+++++.+++++++++||++||+|+|.++++|++++++||+ ++++++|+||+|++|++++|+++++.
T Consensus 2 ~P~Ya~~~g~~~~s~ee~~~~a~~~~~~Gf~~~KikvG~~~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~~~~~~ 81 (252)
T d1yeya1 2 YPAYTTSPGWLGYSDEKLVRLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQ 81 (252)
T ss_dssp EEEEECTTCC----CHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHT
T ss_pred cCceeccCCcCCCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHHhCCCceEeeccccCcchHHHHHHHHh
Confidence 57888743 2 38999999999999999999999999999999999999999 58999999999999999999999999
Q ss_pred hhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHH
Q 013681 270 LNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIK 348 (438)
Q Consensus 270 L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~ 348 (438)
|+++++. |||||++++|+++++++.+ +.+++||++||++.+..+++++++.+++|++|+|++++| +++++++++
T Consensus 82 l~~~~~~--~iEeP~~~~d~~~~~~~~~---~~~~ipia~gE~~~~~~~~~~~i~~~a~d~~~~d~~~~GGit~~~kia~ 156 (252)
T d1yeya1 82 LAEFDIA--WIEEPTSPDDVLGHAAIRQ---GITPVPVSTGEHTQNRVVFKQLLQAGAVDLIQIDAARVGGVNENLAILL 156 (252)
T ss_dssp TGGGCCS--CEECCSCTTCHHHHHHHHH---HSTTSCEECCTTCCSHHHHHHHHHHTCCSEECCCTTTSSHHHHHHHHHH
T ss_pred hhhcCce--eecCCcchhhHHHHHHHhh---ccCCCceeccccccchhhhhhHhhccccceeccccccccCchhhhHHHH
Confidence 9999984 9999999999999988775 247899999999999999999999999999999999998 999999999
Q ss_pred HHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee-ecCCC-cccccCCCCCceeeeCcEEecCCCCCccceeChhhh
Q 013681 349 ATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIV 426 (438)
Q Consensus 349 ~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~-e~~~p-l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l 426 (438)
+|+++|+++++|+..++.++.+++++.++...+.... +...+ .....+.+.+++.++||++.+|++||||+++|+|+|
T Consensus 157 ~A~~~~i~v~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~v~vp~~pGLGield~d~l 236 (252)
T d1yeya1 157 LAAKFGVRVFPHAGGVGLCELVQHLAMADFVAITGKMEDRAIEFVDHLHQHFLDPVRIQHGRYLAPEVPGFSAEMHPASI 236 (252)
T ss_dssp HHHHHTCEECCCCCTTTHHHHHHHHHHHHHHHTTCCCTTCCEEECCSSGGGBSSCCCBSSSEECCCCSSBCSCCBCHHHH
T ss_pred HHHHcCCEEecCCCCcHHHHHHHHHHHHhhhccccccccccccchhhhHHhcCCCCeEECCEEECCCCCCCCeeECHHHH
Confidence 9999999999999877777667666666554433221 11111 112234566778899999999999999999999999
Q ss_pred hhcccccc
Q 013681 427 SCTQVDCC 434 (438)
Q Consensus 427 ~~~~~~~~ 434 (438)
++|+++..
T Consensus 237 ~~y~~~~g 244 (252)
T d1yeya1 237 AEFSYPDG 244 (252)
T ss_dssp HHHBTTTS
T ss_pred hhCCCCCC
Confidence 99997643
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=100.00 E-value=4.2e-42 Score=327.23 Aligned_cols=229 Identities=14% Similarity=0.101 Sum_probs=196.6
Q ss_pred CCceeeeeeeCC----CCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHh-hCCCcEEEEeCCCCCCHHHHH
Q 013681 191 SNSLSTAITIPA----VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHA-VHPHCSFILDANEGYTSEEAV 264 (438)
Q Consensus 191 ~~~ip~~~~i~~----~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~-~~~~~~L~vDAN~~~s~~~A~ 264 (438)
+++|++|.+.+. .+++++.+++++++++||++||+|+|. ++++|+++|++||+ .++++.||+|+|++|++++|+
T Consensus 3 ~~kv~vYas~g~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai 82 (247)
T d1tzza1 3 NPRVFVYAAGGYYYPGKGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGI 82 (247)
T ss_dssp CCEEEEEEECCCC----CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHH
T ss_pred CCceEEEEeCCcCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHhccCCceEEecccccccchhHH
Confidence 679999998764 478999999999999999999999995 89999999999999 589999999999999999999
Q ss_pred HHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCC----ccEEEecCCcch-
Q 013681 265 EVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENL----ASVVNIKLAKFG- 339 (438)
Q Consensus 265 ~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a----~d~i~lk~~~~G- 339 (438)
+++++|+++++ .|||||++++|++++++|++ ++++||++||++.+..+++++++.++ +|++|+|++++|
T Consensus 83 ~~~~~l~~~~i--~wiEeP~~~~d~~~~~~l~~----~~~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~~~~GG 156 (247)
T d1tzza1 83 AYAKMLRDYPL--FWYEEVGDPLDYALQAALAE----FYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCALSYG 156 (247)
T ss_dssp HHHHHHTTSCC--SEEECCSCTTCHHHHHHHTT----TCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTC
T ss_pred HHHhhcchhhh--hhhccccccccchhhhhhhh----ccccccccchhhhhhHHHHHHHHccCCcCcceeEeeccccccc
Confidence 99999999997 59999999999999999985 78999999999999999999998765 599999999997
Q ss_pred HHHHHHHHHHHHHcCCeEEEccCCchhHHHHHHHHHHhhcCCccee-ecCCCcccccCCCCCceeeeCcEEecCCCCCcc
Q 013681 340 VLGTLQIIKATRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTPFLLSEDPFVGGCEVSGAIYNFTNARGQG 418 (438)
Q Consensus 340 i~~~~~~~~~A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~-e~~~pl~~~~~~~~~~~~~~~G~~~~p~~pGlG 418 (438)
++++++++++|+++|+++.+|+.. +++..++..+.+.++.+...+ ++.. ..+.+.+++.++||++.+|++||||
T Consensus 157 it~~~~i~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~G~i~~p~~pGlG 231 (247)
T d1tzza1 157 LCEYQRTLEVLKTHGWSPSRCIPH-GGHQMSLNIAAGLGLGGNESYPDLFQ----PYGGFPDGVRVENGHITMPDLPGIG 231 (247)
T ss_dssp HHHHHHHHHHHHHTTCCGGGBCCS-CCBHHHHHHHHHHTCSCEEECTTCST----TTBSCSTTCCCBTTEEECCCCSBTS
T ss_pred hhHHHHHHHHHHHcCCCeeccCCC-cHHHHHHHHHHHhcCCCceeecchhh----hhhcCCCCcEEECCEEECCCCCCcc
Confidence 999999999999999998877754 344445555544444332221 2222 2345677888999999999999999
Q ss_pred ceeChhhhhhcc
Q 013681 419 GFLKWTIVSCTQ 430 (438)
Q Consensus 419 v~ld~~~l~~~~ 430 (438)
+++|+|++++|+
T Consensus 232 ie~d~d~l~~~~ 243 (247)
T d1tzza1 232 FEGKSDLYKEMK 243 (247)
T ss_dssp GGGCHHHHHHHH
T ss_pred eeECHHHHHHHH
Confidence 999999999986
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-42 Score=339.47 Aligned_cols=219 Identities=14% Similarity=0.163 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHhhc-CCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCceEe
Q 013681 204 SPAEASELASKYCKL-GFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVLFE 281 (438)
Q Consensus 204 ~~~~~~~~~~~~~~~-Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~iE 281 (438)
+|+++.+.+++++++ ||+++|||+|. ++++|+++++++|+..|+++|+||+|++||+++|+++++.|+ +++ .|||
T Consensus 47 ~p~~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~~~~~le-~~l--~w~E 123 (309)
T d1jdfa1 47 TPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLK-GSL--AYAE 123 (309)
T ss_dssp SHHHHHHHHHHHHHHHCCSCEEEECSSSCHHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHHHHHHTT-TTC--SCEE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHHHHHHHh-hcc--hhhh
Confidence 789998999888887 99999999996 789999999999998889999999999999999999999996 575 5999
Q ss_pred cCCCCCCh----hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCe
Q 013681 282 QPVHRDDW----SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLH 356 (438)
Q Consensus 282 qPl~~~d~----~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~ 356 (438)
||++++|. +.+++|++ ++++||++||++.+..++.++++.+++|++|+|+ ++| ++++++++++|+++|++
T Consensus 124 EPv~~~d~~~~~~~l~~lr~----~~~ipIa~gE~~~~~~~~~~~i~~~a~di~~~d~-~~GGit~~~kia~lA~~~gi~ 198 (309)
T d1jdfa1 124 DPCGAEQGFSGREVMAEFRR----ATGLPTATNMIATDWRQMGHTLSLQSVDIPLADP-HFWTMQGSVRVAQMCHEFGLT 198 (309)
T ss_dssp SCBCCBTTBCHHHHHHHHHH----HHCCCEEESSSSSSHHHHHHHHHHTCCSEEBCCH-HHHCHHHHHHHHHHHHHHTCC
T ss_pred hhcccCcchhhHHHHHHhhc----ccccceecCcccchhhhhhhhhhhccceeeeccc-ccccchHHHHHHHHHHhcCCC
Confidence 99998774 44556654 7899999999999999999999999999999996 676 99999999999999999
Q ss_pred EEEccCCchhHHHHHHHHHHhhcCCccee-ecCCC-cccccCCCCCceeeeCcEEecCCCCCccceeChhhhhhcc
Q 013681 357 LMIDGMIETRLATGFALHLAAGLGCIKYV-NLNTP-FLLSEDPFVGGCEVSGAIYNFTNARGQGGFLKWTIVSCTQ 430 (438)
Q Consensus 357 ~~~~s~~es~ig~~a~~hla~al~~~~~~-e~~~p-l~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ld~~~l~~~~ 430 (438)
+++|+..+++|++++++|+++++++..+. +...+ ....++++.+++.++||++.+|++||||||+|+|+|++|.
T Consensus 199 v~~H~~~~~~i~~aa~~hlaaa~p~~~~~~~~~~~~~~~~~~l~~~~~~i~dG~i~vPd~PGLGvelD~d~L~ky~ 274 (309)
T d1jdfa1 199 WGSHSDNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAH 274 (309)
T ss_dssp CBCCCCSCCHHHHHHHHHHHTTCCSCCCCBCCCHHHHTTTCCSBSSCCCCBTTEEECCCSSBTCCCBCHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHHhCCCCccccccccccchhhHhhcCCCceEECCEEECCCCCCCCeEECHHHHHHHH
Confidence 99999889999999999999999885443 22211 2344567778889999999999999999999999999986
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-39 Score=302.80 Aligned_cols=205 Identities=26% Similarity=0.389 Sum_probs=188.0
Q ss_pred CCceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHh
Q 013681 191 SNSLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKL 270 (438)
Q Consensus 191 ~~~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L 270 (438)
.+++++++++++++|+++.+++++++++||++||+|+|. +.|++++++||+..|++.|+||+|++|++++|+++++.|
T Consensus 3 p~~~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~--~~d~~~i~~ir~~~~d~~l~vDaN~~~s~~~A~~~~~~l 80 (208)
T d1jpdx1 3 PETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDN--HLISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLL 80 (208)
T ss_dssp CSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS--SCHHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHH
T ss_pred CCceeeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCC--CcHHHHHHHHHHhccccEEEEecccccchhHHHHHHHHH
Confidence 357899999999999999999999999999999999997 468999999999888999999999999999999999999
Q ss_pred hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHH
Q 013681 271 NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKA 349 (438)
Q Consensus 271 ~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~ 349 (438)
+++++ .|||||++++|++++++++ .++||++||++.+..+++++ .+++|++++|++++| ++++++++++
T Consensus 81 ~~~~l--~~iEeP~~~~d~~~~~~l~------~~~pi~~~E~~~~~~~~~~l--~~~~d~~~~d~~~~GGi~~~~~~a~~ 150 (208)
T d1jpdx1 81 ADLGV--AMLEQPLPAQDDAALENFI------HPLPICADESCHTRSNLKAL--KGRYEMVNIKLDKTGGLTEALALATE 150 (208)
T ss_dssp HHTTC--CEEECCSCTTSCGGGGSSC------CSSCEEESTTCSSGGGHHHH--BTTBSEEEECHHHHTSHHHHHHHHHH
T ss_pred Hhccc--cccCccCCccCHHHHHhhh------cccceecCCCcCCHHHHHHH--hhccCEEEeCCcccCCHHHHHHHHHH
Confidence 99997 4999999999999988773 57899999999999999887 468999999999997 9999999999
Q ss_pred HHHcCCeEEEccCCchhHHHHHHHHHHhhcCCcceeecCCCcccccCCCCCceeeeCcEEec
Q 013681 350 TRKSGLHLMIDGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPFVGGCEVSGAIYNF 411 (438)
Q Consensus 350 A~~~gi~~~~~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~~~~~~~~~G~~~~ 411 (438)
|+++|+++++|+++|++++++|++|++. +..+.|+++|+++.+|+ .+++.++||++++
T Consensus 151 a~~~g~~~~~~~~~~~~i~~~a~~~~a~---~~~~~dld~~~~~~~di-~~~l~i~dG~i~l 208 (208)
T d1jpdx1 151 ARAQGFSLMLGCMLCTSRAISAALPLVP---QVSFADLDGPTWLAVDV-EPALQFTTGELHL 208 (208)
T ss_dssp HHHTTCEEEECCCSCCHHHHHHHGGGGG---GCSEECCCGGGGBSSCC-SSCCEEETTEEEC
T ss_pred HHHcCCeeeecCCchhHHHHHHHHHHhc---cCCCccccchhhhhhcC-CCCCeEeCCEEeC
Confidence 9999999999999999999999999875 45678999998888875 5679999999975
|
| >d1r6wa1 c.1.11.2 (A:100-320) O-succinylbenzoate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: O-succinylbenzoate synthase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-35 Score=274.60 Aligned_cols=186 Identities=22% Similarity=0.182 Sum_probs=162.8
Q ss_pred CCHHHHHHHHHHHhhcCCcEEEEecCC-CchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCC-CCceE
Q 013681 203 VSPAEASELASKYCKLGFSTLKLNVGR-NITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGV-IPVLF 280 (438)
Q Consensus 203 ~~~~~~~~~~~~~~~~Gf~~iKlKvG~-d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l-~~~~i 280 (438)
+||+++.++++++ +||+++|+|||. ++++|++++++||+..|+++||+|||++|++++|+++++.|++++. .++|+
T Consensus 13 gdpde~~~~~~~~--~G~~~~KiKvG~~~~~~D~~~i~~vr~~~pd~~L~vDaN~~w~~~~A~~~~~~l~~~~~~~ie~~ 90 (221)
T d1r6wa1 13 GDPDDLILKLADM--PGEKVAKVRVGLYEAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFL 90 (221)
T ss_dssp SCHHHHHHHHHTC--CSSEEEEEECSSSCHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGEEEE
T ss_pred CCHHHHHHHHHHc--CCCCeEEEeeCCCCHHHHHHHHHHHHHHCCCCeEEEeCCCCCCHHHHHHHHHHHHHhhcCCeeee
Confidence 5899998888764 799999999995 7999999999999988999999999999999999999999997632 24699
Q ss_pred ecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEE
Q 013681 281 EQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMI 359 (438)
Q Consensus 281 EqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~ 359 (438)
|||++ +.++++++++ ++++||++||++.+..+ ..+...++|++++|++++| ++++++++++|+++|+++++
T Consensus 91 E~P~~--~~~~~~~l~~----~~~ipIa~dEs~~~~~~--~~~~~~~~d~v~ik~~~~GGit~~~kia~~A~~~gl~~~~ 162 (221)
T d1r6wa1 91 EEPCK--TRDDSRAFAR----ETGIAIAWDESLREPDF--AFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVI 162 (221)
T ss_dssp ECCBS--SHHHHHHHHH----HHCCCEEESGGGGSTTC--CCCCCTTEEEEEECHHHHCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cchhh--hhhHHHHHhh----cccchhhhccccchhHH--HHHHHhcCcEEEecccccccHHHHHHHHHHHHHcCCcEEE
Confidence 99996 4678888875 68999999999987654 3445678999999999997 99999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHhhcCCcceeecCCCcccccCCC
Q 013681 360 DGMIETRLATGFALHLAAGLGCIKYVNLNTPFLLSEDPF 398 (438)
Q Consensus 360 ~s~~es~ig~~a~~hla~al~~~~~~e~~~pl~~~~~~~ 398 (438)
||++||+||+++++|+|+++++..+.+++++.++.+++.
T Consensus 163 ~~~~es~ig~~a~~hlaa~~~~~~~~gldt~~~~~~d~~ 201 (221)
T d1r6wa1 163 SSSIESSLGLTQLARIAAWLTPDTIPGLDTLDLMQAQQV 201 (221)
T ss_dssp BCSSCCHHHHHHHHHHHHHHCTTSCCBCTTGGGBSCEES
T ss_pred cCCcchHHHHHHHHHHHHhCCCCCCCCCCchhHHhhccc
Confidence 999999999999999999998877778887766655543
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=99.97 E-value=2.8e-30 Score=244.86 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=158.7
Q ss_pred CCCCCceeeeeeeCCCCHH---HH-HHHHHHHhhcCCcEEEEecCCCchHHHH-------HHHHHHh-hCCCcEEEEe--
Q 013681 188 GGASNSLSTAITIPAVSPA---EA-SELASKYCKLGFSTLKLNVGRNITADFD-------VLQAIHA-VHPHCSFILD-- 253 (438)
Q Consensus 188 gg~~~~ip~~~~i~~~~~~---~~-~~~~~~~~~~Gf~~iKlKvG~d~~~di~-------~l~aiR~-~~~~~~L~vD-- 253 (438)
|+...+||+|.+.+...+. ++ .+.++.+.+.||+.+|+|+|.+.++|.+ +++++|+ .++++.|++|
T Consensus 1 G~~~~~VPiy~~~G~~~~~~~d~~i~k~~~~~~~~~~~~vK~K~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~~l~iD~~ 80 (253)
T d1kcza1 1 GAEINAVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAPIFHIDVY 80 (253)
T ss_dssp TCCCCCCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECT
T ss_pred CCCcCCCCeeeccCCcccccHHHHHHHHhhhhhhhhhhhhchhcCCCccccHHHHHHHHHHHHHHhcccccCceeeehhh
Confidence 4567889999888766543 33 2233333357899999999987766665 6666665 4689999999
Q ss_pred ----CCCCCCHHHHHHHHHHhhhCCCC-CceEecCCCCCCh----hhHHHHHHhhc-cccCCeEEEcCCCCCHHHHHHHH
Q 013681 254 ----ANEGYTSEEAVEVLGKLNDMGVI-PVLFEQPVHRDDW----SGLHDVSNFAR-DTYGISVVADESCRSLNDVQKVM 323 (438)
Q Consensus 254 ----AN~~~s~~~A~~~l~~L~~~~l~-~~~iEqPl~~~d~----~~~a~L~~~~r-~~~~iPIa~dEsl~~~~d~~~ll 323 (438)
+|++|++++|++++++|++.... +.|||||++.+|| ++|++|++.+. ..+++||++||++.+..++++++
T Consensus 81 ~~~~~n~~~~~~eai~~~~~L~~~~~~y~i~iEqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~d~~~~i 160 (253)
T d1kcza1 81 GTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIEGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFT 160 (253)
T ss_dssp THHHHHTTTCHHHHHHHHHHHHHHHTTSCEEEECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHH
T ss_pred hccCccCCCCHHHHHHHHHHHHHhcCCCCceEecCCCCccHhhHHHHHHHHHHHHhccCCccceeccccccCHHHHHHHH
Confidence 56699999999999999865321 2389999999885 56777765321 13689999999999999999999
Q ss_pred HcCCccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEc-cCCchhHHHHHHHHHHhhcCCc
Q 013681 324 QENLASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMID-GMIETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 324 ~~~a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~-s~~es~ig~~a~~hla~al~~~ 382 (438)
+.+++|++++|++++| ++++++++++|+++|+++|++ ++.|+.++.++++|+|.+++..
T Consensus 161 ~~~a~d~v~iK~~k~GGi~~al~~~~~a~~~Gi~~~vg~~~~Et~~s~~a~~hla~A~~~~ 221 (253)
T d1kcza1 161 DNKAGHMVQIKTPDLGGVNNIADAIMYCKANGMGAYCGGTCNETNRSAEVTTNIGMACGAR 221 (253)
T ss_dssp HTTCSSEEEECTGGGSSTHHHHHHHHHHHHTTCEEEECCCTTSCHHHHHHHHHHHHHHTCS
T ss_pred HhCCcCeeeccccccCCHHHHHHHHHHHHHcCCcEEEcCccCCcchHHHHHHHHHHhcCcc
Confidence 9999999999999998 999999999999999999997 5889999999999999997654
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=99.95 E-value=2.9e-28 Score=230.26 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=158.6
Q ss_pred CCceeeeeeeCCCCHH---HHH-HHHHHHhhcCCcEEEEecCCC-------chHHHHHHHHHHh-hCCCcEEEEeCCC--
Q 013681 191 SNSLSTAITIPAVSPA---EAS-ELASKYCKLGFSTLKLNVGRN-------ITADFDVLQAIHA-VHPHCSFILDANE-- 256 (438)
Q Consensus 191 ~~~ip~~~~i~~~~~~---~~~-~~~~~~~~~Gf~~iKlKvG~d-------~~~di~~l~aiR~-~~~~~~L~vDAN~-- 256 (438)
.++||+|.+.+.+.++ .|. +.++.+.+.+|+.+|.|+|.+ ++.++++++++|. .|+++.|++|+|+
T Consensus 4 ~~~VP~~g~~g~~~~~~~e~mI~~~a~~~~~~~~~~lk~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~iD~~~~~ 83 (251)
T d1kkoa1 4 PEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHIDVYGTI 83 (251)
T ss_dssp CCCCCEECCCTTCTTHHHHHHHHTTCSEEEETTCCCCCCCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEEECTTHH
T ss_pred CCCcccccccCCCcccchHHHHHhhhHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceeecccccc
Confidence 4678999887766554 332 223334456899999999963 4456678888876 5899999999876
Q ss_pred ----CCCHHHHHHHHHHhhhCCCC-CceEecCCCC----CChhhHHHHHHhhc-cccCCeEEEcCCCCCHHHHHHHHHcC
Q 013681 257 ----GYTSEEAVEVLGKLNDMGVI-PVLFEQPVHR----DDWSGLHDVSNFAR-DTYGISVVADESCRSLNDVQKVMQEN 326 (438)
Q Consensus 257 ----~~s~~~A~~~l~~L~~~~l~-~~~iEqPl~~----~d~~~~a~L~~~~r-~~~~iPIa~dEsl~~~~d~~~ll~~~ 326 (438)
+|++++|++++++|.+.... +.|||||++. +|++++++|++.+. +.+++||++||++.+..+++++++.+
T Consensus 84 ~~~~~~~~~~ai~~l~~L~~~~~~~~l~IEqP~~~~~~~~d~~gl~~l~~~l~~~g~~vpI~~DE~~~t~~d~~~~i~~~ 163 (251)
T d1kkoa1 84 GLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRMLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAG 163 (251)
T ss_dssp HHHTTTCHHHHHHHHHHTGGGGTTSCEEEECCCCCSSHHHHHHHHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCceeecCCcccccchHHHHHHHHHHHHHhccCCCceEeccceeCCHHHHHHHHHhC
Confidence 89999999999999875321 2399999974 56888999986432 23689999999999999999999999
Q ss_pred CccEEEecCCcch-HHHHHHHHHHHHHcCCeEEEc-cCCchhHHHHHHHHHHhhcCCc
Q 013681 327 LASVVNIKLAKFG-VLGTLQIIKATRKSGLHLMID-GMIETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 327 a~d~i~lk~~~~G-i~~~~~~~~~A~~~gi~~~~~-s~~es~ig~~a~~hla~al~~~ 382 (438)
++|++++|++++| ++++++++++|+++|+++|++ ++.||+++.+|++|+|++++..
T Consensus 164 a~d~v~iK~~k~GGi~~a~~~~~~A~~~Gi~~~~g~~~~ET~~~~~a~~hla~a~~~~ 221 (251)
T d1kkoa1 164 SCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPM 221 (251)
T ss_dssp CCSEEEECGGGGSSTHHHHHHHHHHHHHTCEEEECCCTTSCHHHHHHHHHHHHHHCCS
T ss_pred CccceeccccccCCHHHHHHHHHHHHHCCCeEEEeCcccCcchHHHHHHHHHHhcCCc
Confidence 9999999999998 999999999999999999998 5889999999999999887653
|
| >d1jpma2 d.54.1.1 (A:1-125) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=5.4e-26 Score=192.83 Aligned_cols=123 Identities=30% Similarity=0.524 Sum_probs=110.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHH-HHHHHHH-HhhHhcCCCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTK-ALVKVRE-ACQFLRQSPPT 142 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~-~~~~~~~-i~~~l~g~~~~ 142 (438)
|||++++++.+++|+++||.++.++.+.++.++|+|+|++|++||||+.+.+.++++..+ ....+++ +.|.|.|+++.
T Consensus 1 MkI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~e~~~~~~~~i~~~~~p~l~g~~~~ 80 (125)
T d1jpma2 1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLA 80 (125)
T ss_dssp CBEEEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEETTSCEEEEEECCBTTTTCBCHHHHHHHHHHTHHHHHTTCBGG
T ss_pred CEEEEEEEEEEEeeccCCeEccCeEEEEEEEEEEEEEECCCCEEEEEecccccccccccchhHHHHHHHHHhhhcccCcc
Confidence 899999999999999999999999999999999999999999999999998888875443 3333444 68999999999
Q ss_pred CHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 143 TLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 143 ~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+.+.+++.+...+.++ +.+++|||||+||++||..|+|||+||||
T Consensus 81 ~~~~~~~~l~~~~~~~--~~a~aaid~AlwDl~~K~~g~pl~~llGG 125 (125)
T d1jpma2 81 GYEAILHDIQHLLTGN--MSAKAAVEMALYDGWAQMCGLPLYQMLGG 125 (125)
T ss_dssp GHHHHHHHHHHSSSSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred cHHHHHHHhhhhccCc--cHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 9999999998877775 56899999999999999999999999997
|
| >d1nu5a2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=99.92 E-value=1.2e-24 Score=184.79 Aligned_cols=122 Identities=21% Similarity=0.352 Sum_probs=107.5
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCC--CCchHHHHHH-HHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL--VTGDQTKALV-KVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~--~s~~~~~~~~-~~~~-i~~~l~g~~ 140 (438)
|||++|+++.+++||++||.+|.++.++++.++|+|+| +|++|||||.+.+. ++++..+... .+++ +.|.|.|++
T Consensus 1 MKI~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~ 79 (126)
T d1nu5a2 1 MKIEAISTTIVDVPTRRPLQMSFTTVHKQSYVIVQVKA-GGLVGIGEGGSVGGPTWGSESAETIKVIIDNYLAPLLVGKD 79 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEE-TTEEEEEEECCSTTTTTSSCCHHHHHHHHHHTHHHHHTTSB
T ss_pred CEEEEEEEEEEecccCCCeEecceEEEeeeEEEEEEEc-CCeEEEeeccccCCCccccccHHHHHHHHHHHhhhhhhhcC
Confidence 89999999999999999999999999999999999998 59999999998653 4455444433 3444 689999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+.+++.+++.|...+.++ ++|++||||||||+.||..|+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d1nu5a2 80 ASNLSQARVLMDRAVTGN--LSAKAAIDIALHDLKARALNLSIADLIGG 126 (126)
T ss_dssp TTCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred cccHHHHHHHhhhhhhcc--chHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 999999999998878776 57899999999999999999999999997
|
| >d2chra2 d.54.1.1 (A:1-126) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=99.91 E-value=9.1e-25 Score=185.61 Aligned_cols=122 Identities=27% Similarity=0.432 Sum_probs=106.6
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC--CCCchHHHHH-HHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--LVTGDQTKAL-VKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~s~~~~~~~-~~~~~-i~~~l~g~~ 140 (438)
|||++|+++.+++||++||++|.++.+.++.++|+|+| ||.+|||||.+.+ .++++..+.. ..+++ +.|.|.|++
T Consensus 1 MkI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~v~v~i~~-dG~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~l~p~lig~~ 79 (126)
T d2chra2 1 MKIDAIEAVIVDVPTKRPIQMSITTVHQQSYVIVRVYS-EGLVGVGEGGSVGGPVWSAECAETIKIIVERYLAPHLLGTD 79 (126)
T ss_dssp CCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEEEEB-TTBCCEEECCCSTTTTTSSCCHHHHHHHHHHHTHHHHTTSC
T ss_pred CEEEEEEEEEEeccccCceEeccceEeeeeEEEEEEEc-CCceEeEeecccCCCccccchHHHHHHHHHHHhcccccccc
Confidence 79999999999999999999999999999999999998 5999999998764 3555544433 33444 689999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+.+++.+++.+...+.++ +++++||||||||+.||..|+|||+||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~A~aaid~AlwDl~~K~~~~pl~~llGG 126 (126)
T d2chra2 80 AFNVSGALQTMARAVTGN--ASAKAAVEMALLDLKARALGVSIAELLGG 126 (126)
T ss_dssp TTCHHHHHHHHHTTCSSC--HHHHHHHHHHHHHHHHHHTTCCHHHHTTC
T ss_pred cccHHHHHHHhhhccccc--hHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 999999999998777776 46899999999999999999999999997
|
| >d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=8e-24 Score=176.84 Aligned_cols=115 Identities=22% Similarity=0.229 Sum_probs=100.1
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++|+++.+++|+++||.++.++.+.++.++|+|+|++|++|||||.+.. ... .....+.+.|.+.|+++.+.
T Consensus 1 mKI~~i~~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~~d~G~~G~Ge~~~~~---~~~--~~~i~~~l~~~l~g~~~~~~ 75 (115)
T d2gdqa2 1 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWL---PAL--HVGFTKRIIPFLLGKQAGSR 75 (115)
T ss_dssp CBEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECSCH---HHH--HHHHHHTHHHHHTTSBTTCH
T ss_pred CEEEEEEEEEEeeecCCceEecCeEEEeeeEEEEEEEECCcceEEEecCCch---hhh--HHHHHHHHhhhhcccChhhH
Confidence 7999999999999999999999999999999999999999999999997542 111 11123447899999999999
Q ss_pred HHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 145 NFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 145 ~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+.+|+.+... .+.+++||||||||+.||..|+|||+||||
T Consensus 76 ~~~~~~~~~~-----~~~a~aaid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 76 LSLVRTIQKW-----HQRAASAVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp HHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 9999988753 256899999999999999999999999997
|
| >d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Muconate-lactonizing enzyme (cis muconate cycloisomerase) species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=7.1e-23 Score=173.05 Aligned_cols=122 Identities=20% Similarity=0.362 Sum_probs=94.5
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCC--CCchHHHH-HHHHHH-HhhHhcCCCC
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL--VTGDQTKA-LVKVRE-ACQFLRQSPP 141 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~--~s~~~~~~-~~~~~~-i~~~l~g~~~ 141 (438)
.|++|+++.+++|+++||.++.++.+.++.++|+|+|++|++||||+.+.+. ++.+..+. ...+.. +.+.+.+.++
T Consensus 2 ~I~~ie~~~~~~Pl~~p~~~s~~~~~~~~~~iV~i~td~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (127)
T d1muca2 2 LIERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALIGLAA 81 (127)
T ss_dssp BEEEEEEEEEEEEBCC---------CEEEEEEEEEEETTSCEEEEEEECSTTTTTSSCCHHHHHHHHHHTHHHHHTTSBT
T ss_pred EEeEEEEEEEeccccCceEccceeEeeeeEEEEEEEeCCCcEEEEEeeccccccccccchHHHHHHHHhhhcccccccch
Confidence 5999999999999999999999999999999999999999999999997643 23332222 222333 5788999999
Q ss_pred CCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 142 TTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 142 ~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
.+...++..+.....++ +.+++||||||||++||..|+|||+||||
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~a~aaid~AlwDl~~K~~g~Pl~~lLGG 127 (127)
T d1muca2 82 DNINAAMLKLDKLAKGN--TFAKSGIESALLDAQGKRLGLPVSELLGG 127 (127)
T ss_dssp TCHHHHHHHHHHHCSSC--HHHHHHHHHHHHHHHHHHHTCBHHHHTTC
T ss_pred hhHHHHHHHhhhhcccc--hHHHHHHHHHHHHHHHHHcCCCHHHHcCC
Confidence 99999999888776654 56899999999999999999999999997
|
| >d1wufa2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=99.89 E-value=1.8e-23 Score=177.62 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=103.8
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHH-HHHHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTK-ALVKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~-~~~~~~~-i~~~l~g~~ 140 (438)
|||++++++.+++||+.||++|.++.+.++.++|+|+|++|++|||||.+. +.|+++..+ ....+++ +.|.+.|++
T Consensus 1 Mki~~i~~~~~~lPl~~p~~~s~~~~~~~~~~iv~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~l~~~l~p~l~g~~ 80 (126)
T d1wufa2 1 MYFQKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSSAILIIKEQLLPLLAQRK 80 (126)
T ss_dssp EECCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTTHHHHHHCE
T ss_pred CEEEEEEEEEEeccccCCEECcCEEEEEEEEEEEEEEECCCcEEEEEEeecCccCCChhhhhhhhheeeecccchhcCCC
Confidence 899999999999999999999999999999999999999999999999754 556665443 3334444 689999999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+.+.+.+++.+.. +.++ +.+++||||||||+.||..|+|||+|||.
T Consensus 81 ~~~~~~i~~~~~~-~~~~--~~A~aaid~AlwDl~~K~~~~pl~~lLGa 126 (126)
T d1wufa2 81 IRKPEEIQELFSW-IQGN--EMAKAAVELAVWDAFAKMEKRSLAKMIGA 126 (126)
T ss_dssp ESSTTHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred chhHHHHHHHhhh-ccCc--hHHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 9998888776643 4555 46899999999999999999999999984
|
| >d2mnra2 d.54.1.1 (A:3-132) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=4.8e-22 Score=168.77 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=100.1
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCC
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~ 143 (438)
+|+|++|+++.+++|+++||.+|.++.+.++.++|+|+|++|++||||+.+.+..+.. ......+.+.+.+.+.+ .+
T Consensus 1 ~~~I~~i~~~~~~~Pl~~p~~~s~~~~~~~~~~~V~i~t~~G~~G~Ge~~~~~~~~~~--~~~~~~~~~~~~l~~~~-~~ 77 (130)
T d2mnra2 1 EVLITGLRTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALK--SLKQLLDDMAAMIVNEP-LA 77 (130)
T ss_dssp CCBEEEEEEEEEEECCSSCEEETTEEECSEEEEEEEEEETTSCEEEEEEECSSGGGHH--HHHHHHHHHHHHHTTSB-SC
T ss_pred CCEEEEEEEEEEEecccCCeeccceEEeeceEEEEEEEECCccceeeeeeecCcccch--hHHHHHHHHHHHhccCC-CC
Confidence 4899999999999999999999999999999999999999999999999986543332 12222345677777654 45
Q ss_pred HHHHHHHHHHHCC--CC--hhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCCC
Q 013681 144 LNFALDEIARILP--GS--EFASVRAGVEMALIDAVANSIDIPLWRLFGGAS 191 (438)
Q Consensus 144 ~~~~~~~l~~~~~--g~--~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~~ 191 (438)
....++.+..... ++ ....+++|||+||||+.||..|+|||+||||..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~Pl~~lLGG~~ 129 (130)
T d2mnra2 78 PVSLEAMLAKRFCLAGYTGLIRMAAAGIDMAAWDALGKVHETPLVKLLGANA 129 (130)
T ss_dssp HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHTTCCC
T ss_pred HHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHHHhCCCHHHHhCCCC
Confidence 5667777765432 11 345789999999999999999999999999973
|
| >d1rvka2 d.54.1.1 (A:1-126) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.88 E-value=2.5e-22 Score=170.44 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=98.8
Q ss_pred eeEEEEEEEEEEeeccCCcccCCe----eEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLS----SVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~----~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~ 140 (438)
|||++|+++.+++|+++|+..+.+ ..+..+.++|+|+|++|++||||+.+... +. ..+ .+.+.|.|.|++
T Consensus 1 MkIt~v~~~~~~~pl~~~~~~a~~~~~g~~~~~~~v~V~v~td~G~~G~Ge~~~~~~-~~---~~i--~~~l~~~lig~~ 74 (126)
T d1rvka2 1 MIITDVEVRVFRTTTRRHSDSAGHAHPGPAHQVEQAMLTVRTEDGQEGHSFTAPEIV-RP---HVI--EKFVKKVLIGED 74 (126)
T ss_dssp CBEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEETTSCEEEEEECGGGG-CH---HHH--HHTHHHHHTTSB
T ss_pred CEEEEEEEEEEEeeCCCccccccccCCCCcceeEEEEEEEEECCCCEEEEEeCCHHH-HH---HHH--HHHHHHHHhhcC
Confidence 899999999999999999988854 46788999999999999999999975321 11 111 134789999999
Q ss_pred CCCHHHHHHHHHHHC-C--CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 141 PTTLNFALDEIARIL-P--GSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~-~--g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+.+.+.+|+.+.... . +...+.+++|||+||||++||.+|+|||+||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~A~aavdiAlwDl~~K~~g~Pl~~LLGG 126 (126)
T d1rvka2 75 HRDRERLWQDLAHWQRGSAAQLTDRTLAVVDCALWDLAGRSLGQPVYKLIGG 126 (126)
T ss_dssp TTCHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHHHHTCBHHHHHCC
T ss_pred cchhhhhhhhhccccccCCcchhhHHHHHHHHHHHHHHHHHcCCCHHHHcCc
Confidence 999999999987642 1 223477899999999999999999999999997
|
| >d2gl5a2 d.54.1.1 (A:1-122) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=99.87 E-value=2.7e-22 Score=169.33 Aligned_cols=117 Identities=19% Similarity=0.297 Sum_probs=96.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
|||++|+++.+++|++.|+..+. +.++|+|+|++|++||||+.+.+....+ ......+.+.|.++|+++.++
T Consensus 1 MKI~~Ie~~~~~~p~~~~~~~~~------~~iiV~i~td~Gi~G~Ge~~~~~~~~~~--~~~~~~~~~~~~lig~~~~~~ 72 (122)
T d2gl5a2 1 LKITSIEVFDCELKKRDQTMSSY------NPVLIRVNTDSGLSGIGEVGLAYGAGAK--AGVGIIRDLAPLIVGEDPLNI 72 (122)
T ss_dssp CCEEEEEEEECCGGGTCGGGTTC------CCEEEEEEETTSCEEEEEESCSSSTTHH--HHHHHHHHHGGGTTTSCTTCH
T ss_pred CEEeEEEEEEEcCCCCCCccccc------eeEEEEEEECCCCEEEEeeccccccchH--HHHHHHHHHHhhhcccccchh
Confidence 89999999999999998866553 5689999999999999999765432221 222334678999999999999
Q ss_pred HHHHHHHHHHC-----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 145 NFALDEIARIL-----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 145 ~~~~~~l~~~~-----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+.+|+.+++.. .+....++++|||+||||+.||..|+|||+||||
T Consensus 73 e~~~~~l~~~~~~~~~~~~~~~~a~aaid~AlwDl~~K~~~~PL~~lLGG 122 (122)
T d2gl5a2 73 EKIWEFFFRKTFWGMGGGNVFYAGMSAIDIALWDIKGKYLGVPVYQLLGG 122 (122)
T ss_dssp HHHHHHHHHSSSGGGSCCHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTS
T ss_pred hHHHHHHhhhcccccccCCcccchHHHHHHHHHHHHHHHhCCCHHHHcCC
Confidence 99999998742 1223456899999999999999999999999997
|
| >d1wuea2 d.54.1.1 (A:1001-1126) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.87 E-value=5.7e-22 Score=167.40 Aligned_cols=121 Identities=16% Similarity=0.195 Sum_probs=99.7
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCC--CCchHHH-HHHHHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL--VTGDQTK-ALVKVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~--~s~~~~~-~~~~~~~-i~~~l~g~~ 140 (438)
|||++|+++.+++|+++||.+|.++.+.++.++|+++|++|++||||+.+.+. ++++... ....+.. +.+.+.+.+
T Consensus 1 MKI~~ie~~~~~~pl~~p~~~s~~~~~~~~~~~v~i~t~~G~~G~GE~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T d1wuea2 1 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQETLVTERFIIQQHLIPLLLTEA 80 (126)
T ss_dssp CCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTSCEEEEEECCCSSTTSSSCCHHHHHHHHHHTHHHHHTTSC
T ss_pred CEEeEEEEEEEeccccCCEEccCeEEEeeeEEEEEEEECCCcEEEEEEeccCccccchhhhhhhhhhhhccccccccccc
Confidence 89999999999999999999999999999999999999999999999997643 4443332 2222333 567888999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg 188 (438)
..+.+.+++.+.. ..++ +.+++||||||||++||..|+|||+|||
T Consensus 81 ~~~~~~~~~~~~~-~~~~--~~a~aaid~AlwDl~ak~~~~pl~~lLG 125 (126)
T d1wuea2 81 IEQPQEVSTIFEE-VKGH--WMGKAALETAIWDLYAKRQQKSLTEFFG 125 (126)
T ss_dssp CCSTHHHHHHGGG-SCSC--HHHHHHHHHHHHHHHHHHTTSBGGGGSS
T ss_pred cccHHHHHHHHhh-ccCc--cHHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 9988877766543 3344 4689999999999999999999999998
|
| >d1sjda2 d.54.1.1 (A:1-125) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=99.86 E-value=9.7e-22 Score=165.61 Aligned_cols=121 Identities=21% Similarity=0.320 Sum_probs=101.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecC--CCCCchHHHHHH-HHHH-HhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVV--PLVTGDQTKALV-KVRE-ACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~s~~~~~~~~-~~~~-i~~~l~g~~ 140 (438)
|||++|+++.+++|+++||.++.++.+.++.++|+++|++| +||||+.+. +.++++..+... .++. +.+.+.+.+
T Consensus 1 MKI~~i~~~~i~~Pl~~p~~~s~~~~~~~~~~iv~l~~~~g-~G~Ge~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 79 (125)
T d1sjda2 1 MKLSGVELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEHVLRHYLIPALLAAE 79 (125)
T ss_dssp CCCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECSSC-EEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHHHSS
T ss_pred CEEEEEEEEEEeccccCCEEccCceEeeeeEEEEEEEecCc-eEEEEEEecCccccchhhhhhhhhhhhhccchhhcCCC
Confidence 89999999999999999999999999999999999999877 799999875 445655443332 2233 577888999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+.+.+.+++.+.. ..++ +.+++||||||||+.||..|+|||+|||.
T Consensus 80 ~~~~~~~~~~~~~-~~~~--~~a~aaid~AlwDl~ak~~~~Pl~~lLGa 125 (125)
T d1sjda2 80 DITAAKVTPLLAK-FKGH--RMAKGALEMAVLDAELRAHERSFAAELGS 125 (125)
T ss_dssp SCCHHHHHHHHTT-SCSC--HHHHHHHHHHHHHHHHHHTTCBHHHHHTC
T ss_pred ccCHHHHHHHHHH-ccCC--cHHHHHHHHHHHHHHHHHcCCcHHHHhCc
Confidence 9999988887643 4444 56899999999999999999999999984
|
| >d1r0ma2 d.54.1.1 (A:6-132) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.85 E-value=2.2e-21 Score=164.18 Aligned_cols=121 Identities=20% Similarity=0.174 Sum_probs=90.2
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCC--CCchHHH-HHHHHH-HHhhHhcCCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL--VTGDQTK-ALVKVR-EACQFLRQSP 140 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~--~s~~~~~-~~~~~~-~i~~~l~g~~ 140 (438)
|||++|+++.+++||+.||.+|.++.+.++.++|++++ +|.+||||+.+.+. ++++... ....+. .+.|.+.|++
T Consensus 3 ~kI~~ie~~~~~~Pl~~p~~~s~~~~~~~~~vvv~~~~-~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (127)
T d1r0ma2 3 FKIEAAEIVVARLPLKFRFETSFGVQTHKVVPLLILHG-EGVQGVAEGTMEARPMYREETIAGALDLLRGTFLPAILGQT 81 (127)
T ss_dssp EECCEEEEEEEEEEBC----------CEEEEEEEEEEE-TTEEEEEECCCBSSSSSSSCBHHHHHHHHHHTHHHHHTTCE
T ss_pred ceEEEEEEEEEeecccCCEECcCcEEEeeeEEEEEEEc-CCcEEEEEEEcCCCcccchhhhhhhhhhhhhhcccccccCC
Confidence 89999999999999999999999999999999999997 59999999988643 4443322 222233 3678899999
Q ss_pred CCCHHHHHHHHHHHCCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 141 PTTLNFALDEIARILPGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 141 ~~~~~~~~~~l~~~~~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+.++++++..+.. +.++ +.+++||||||||+.||..|+|||+||||
T Consensus 82 ~~~~~~~~~~~~~-~~~~--~~a~aaid~AlwDl~aK~~~~pl~~llGG 127 (127)
T d1r0ma2 82 FANPEAVSDALGS-YRGN--RMARAMVEMAAWDLWARTLGVPLGTLLGG 127 (127)
T ss_dssp ESSHHHHHHTTTT-SCSC--HHHHHHHHHHHHHHHHHHHTCBHHHHHTC
T ss_pred hhhHHHHhhhhcc-cCCc--hHHHHHHHHHHHHHHHHHhCCcHHHHcCC
Confidence 9999888776543 3333 57899999999999999999999999997
|
| >d1bqga2 d.54.1.1 (A:12-143) D-glucarate dehydratase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=1.1e-20 Score=161.39 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=98.8
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCHH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTLN 145 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~~ 145 (438)
||++||++++..|++.++..+....+..+.++|+|+|++|++||||+.+.. .....++.+.+.++|+++.+++
T Consensus 4 ~It~ve~~~v~~~~~~~~~~~g~~~~~~~~~lV~i~td~G~~G~Ge~~~~~-------~~~~~~~~~~~~~ig~~~~~~~ 76 (132)
T d1bqga2 4 VITDLKVVPVAGHDSMLLNLSGAHGPLFTRNILILTDSSGHVGVGEVPGGE-------GIRKTLEDARHLLINQSIGNYQ 76 (132)
T ss_dssp BEEEEEEEEEEEECCCEEETTEECCSEEEEEEEEEEETTSCEEEEEEECCH-------HHHHHHHTTHHHHBTCBGGGHH
T ss_pred EEEEEEEEEEeccCcccccCCCCCCCcceEEEEEEEECCCcEEEEEeCCcH-------hHHHHHHHhhhhhcCcChHHHH
Confidence 899999999999999999999888888899999999999999999998542 1122245678999999999999
Q ss_pred HHHHHHHHHCCCC-------------hhhHHHHHHHHHHHHHHHHHCCCCHHHHhC
Q 013681 146 FALDEIARILPGS-------------EFASVRAGVEMALIDAVANSIDIPLWRLFG 188 (438)
Q Consensus 146 ~~~~~l~~~~~g~-------------~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg 188 (438)
.+|+.|.+..... ...++++||||||||++||..|+|||+|||
T Consensus 77 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 132 (132)
T d1bqga2 77 SLLNKVRNAFADRDVGGRGLQTFDLRIAVHAVTAVESALLDLLGQHLQVPVAALLG 132 (132)
T ss_dssp HHHHHHHHHTCC------------CHHHHHHHHHHHHHHHHHHHHHHTCBGGGGST
T ss_pred HHHHHHHHHhcccCcccccccccccchHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 9999998753211 245789999999999999999999999997
|
| >d1jdfa2 d.54.1.1 (A:5-137) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=3.4e-20 Score=158.46 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=98.0
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCCH
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTTL 144 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~~ 144 (438)
.+|+++++++++.|.+.++..+....+....++|+|+|++|++||||+.+.+. ....++.+.+.+.|.++.++
T Consensus 4 p~It~i~~~~v~~~~~~~~~~~~~~~~~~~~~iV~l~t~~Gi~G~Ge~~~~~~-------~~~~~~~~~~~l~g~~~~~~ 76 (133)
T d1jdfa2 4 PVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEK-------IRKTLEDAIPLVVGKTLGEY 76 (133)
T ss_dssp CBEEEEEEEEEEEECCCBEETTEECCSEEEEEEEEEEETTSCEEEEEEECCHH-------HHHHHHHHHHHHTTCBGGGH
T ss_pred CeEEEEEEEEecccCcccccCCCCcCCccceEEEEEEECCCCEEEEEecCcHH-------HHHHHHhhhhhhcCCChhhH
Confidence 58999999999999999999887777778889999999999999999975321 12234567899999999999
Q ss_pred HHHHHHHHHHCC-------------CChhhHHHHHHHHHHHHHHHHHCCCCHHHHhC
Q 013681 145 NFALDEIARILP-------------GSEFASVRAGVEMALIDAVANSIDIPLWRLFG 188 (438)
Q Consensus 145 ~~~~~~l~~~~~-------------g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llg 188 (438)
+.+++.+..... ....+.+++|||+||||++||..|+|||+|||
T Consensus 77 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pl~~LLG 133 (133)
T d1jdfa2 77 KNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLG 133 (133)
T ss_dssp HHHHHHHHHHTGGGGTTCSCSSSSCCCCHHHHHHHHHHHHHHHHHHHHTSBGGGGST
T ss_pred HHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHHcCCcHHHHcC
Confidence 999998876421 11246799999999999999999999999997
|
| >d1tzza2 d.54.1.1 (A:1006-1145) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.79 E-value=1.3e-19 Score=156.18 Aligned_cols=119 Identities=20% Similarity=0.259 Sum_probs=81.9
Q ss_pred eeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcC-----CcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCC
Q 013681 65 VDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSN-----GCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQS 139 (438)
Q Consensus 65 ~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~-----G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~ 139 (438)
|||+++ +.+++|++.|++++.++++.++.++|+|+||+ |.+||||+.+.+..... .....+.|.+.|+
T Consensus 1 mkIvdi--~~~~vPl~~p~~~s~~~~~~~~~~lV~i~Td~G~~G~G~~G~g~~~~~~~~~~~-----~~~~~~~~~lig~ 73 (140)
T d1tzza2 1 VRIVDV--REITKPISSPIRNAYIDFTKMTTSLVAVVTDVVREGKRVVGYGFNSNGRYGQGG-----LIRERFASRILEA 73 (140)
T ss_dssp CCEEEE--EEEEEECCC---------CCCEEEEEEEEEEEECSSSEEEEEEECCTTSCCCHH-----HHHHTHHHHHHTS
T ss_pred CeEEEE--EEEEecCCCCcccccceeeceEEEEEEEEEeecccCcceEeeEecCCchhHHHH-----HHHHHHHHHHhcc
Confidence 678765 56889999999999999999999999999984 45789998765432221 1123466777776
Q ss_pred CC----------CCHHHHHHHHHHHC-CC--ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCCC
Q 013681 140 PP----------TTLNFALDEIARIL-PG--SEFASVRAGVEMALIDAVANSIDIPLWRLFGGA 190 (438)
Q Consensus 140 ~~----------~~~~~~~~~l~~~~-~g--~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg~ 190 (438)
++ .+.+.+|+.|.+.. .+ .....|++||||||||++||.+|+|||+||||.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~aaiDiAlWDl~gK~~g~Pl~~LLgg~ 137 (140)
T d1tzza2 74 DPKKLLNEAGDNLDPDKVWAAMMINEKPGGHGERSVAVGTIDMAVWDAVAKIAGKPLFRLLAER 137 (140)
T ss_dssp CGGGSBCTTSSSBCHHHHHHHHTTTCCSCCCSHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHH
T ss_pred cHhhHhhhcccccChHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHcCCcHHHHhccc
Confidence 65 35577888876532 11 234578999999999999999999999999985
|
| >d1yeya2 d.54.1.1 (A:2-140) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=99.77 E-value=2.5e-19 Score=154.22 Aligned_cols=123 Identities=15% Similarity=0.135 Sum_probs=92.5
Q ss_pred eEEEEEEEEEEeeccCCcccC--CeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCchHHHHHHHHHHHhhHhcCCCCCC
Q 013681 66 DVQRAEGRELNVALSAPLSLG--LSSVENVENVAIRVELSNGCVGWGEVAVVPLVTGDQTKALVKVREACQFLRQSPPTT 143 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s--~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~~~~~~~~~~~~i~~~l~g~~~~~ 143 (438)
+|++++.+.+++|+.++...+ .+..++...++|+|+|++|..|+||+...+..... .......+.+.|.++|+++.+
T Consensus 2 tI~~v~~~~~r~P~~~~~~~s~a~~~~~~~~~~~V~i~td~g~~g~G~~~~~~~~~~~-~~~~~~~~~l~p~liG~~~~~ 80 (139)
T d1yeya2 2 TIIALETHDVRFPTSRELDGSDAMNPDPDYSAAYVVLRTDGAEDLAGYGLVFTIGRGN-DVQTAAVAALAEHVVGLSVDK 80 (139)
T ss_dssp BEEEEEEEEEECCGGGCC------CCSCCCEEEEEEEEESSCTTCEEEEEEEECSTTH-HHHHHHHHTTHHHHTTCBHHH
T ss_pred eEEEEEEEEEEccCccCCCCcCCcccCCCcceeEEEEEECCCCcEEEEEEEecCCChH-HHHHHHHHHHHHHhhCCCccc
Confidence 699999999999999998544 44556677899999999888888887654322221 112223455899999999999
Q ss_pred HHHHHHHHHHHCCC-----------ChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 144 LNFALDEIARILPG-----------SEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 144 ~~~~~~~l~~~~~g-----------~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
++++|+.+++.+.. ....++++|||+||||++||..|+|||+|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saIDiALWDl~gK~~~~Pl~~LL~~ 137 (139)
T d1yeya2 81 VIADLGAFARRLTNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRFIAE 137 (139)
T ss_dssp HHHCHHHHHHHHHTCHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHTTSBHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHcCCcHHHHhhh
Confidence 99888888754211 12356899999999999999999999999986
|
| >d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=99.15 E-value=1.3e-10 Score=110.25 Aligned_cols=117 Identities=23% Similarity=0.427 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecC
Q 013681 258 YTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKL 335 (438)
Q Consensus 258 ~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~ 335 (438)
.+.+|.++++..| ++|.+ .+||+|+..+||+++++|++ +.++-|.+|. .++++.-+++.++..+++.+.+||
T Consensus 131 ~t~delid~y~~l~~kYPI--isIEDP~~E~D~~gw~~lt~----~lg~~ivGDDl~vTn~~rl~kgi~~~aanailIK~ 204 (294)
T d2akza1 131 ITGDQLGALYQDFVRDYPV--VSIEDPFDQDDWAAWSKFTA----NVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKV 204 (294)
T ss_dssp BCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHH----TCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECH
T ss_pred ecHHHHHHHHHHHhcccCe--EEEeCCCcccchhhHHHHHH----hcCcEEEccccccccHHHHHHHHhcCcCccceecc
Confidence 5789989888765 68886 59999999999999999997 5678888877 777888889999999999999999
Q ss_pred Ccch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 336 AKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 336 ~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
..+| ++++++.+.+|+++|+.+++++.. |+ .-..++|||.|++..
T Consensus 205 NQiGTltEt~ea~~la~~~g~~~ivShRsGET--eD~~iaDLAVg~~a~ 251 (294)
T d2akza1 205 NQIGSVTEAIQACKLAQENGWGVMVSHRSGET--EDTFIADLVVGLCTG 251 (294)
T ss_dssp HHHCCHHHHHHHHHHHHHTTCEEEEECCSBCC--SCCHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHcCCcEEeeCCCCCc--CcchHhHHHHhcCCC
Confidence 9999 999999999999999999998754 22 123678999988764
|
| >d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.12 E-value=2.6e-10 Score=108.15 Aligned_cols=118 Identities=20% Similarity=0.352 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEecCC
Q 013681 259 TSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIKLA 336 (438)
Q Consensus 259 s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk~~ 336 (438)
|.+|.++++..| ++|.| .+||+|+..+||+++++|++.+ ...+-|.+|. .++++.-+++.++..+++.+.+||.
T Consensus 133 s~~elid~y~~l~~~YPI--isIEDP~~e~D~~gw~~lt~~l--g~~~~iVGDDL~vTn~~~l~~gI~~~~~nailiK~N 208 (296)
T d1w6ta1 133 TSAEQIDYLEELVNKYPI--ITIEDGMDENDWDGWKALTERL--GKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVN 208 (296)
T ss_dssp CHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHH--TTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHH
T ss_pred CHHHHHHHHHHHHhcCCe--EEEecCcccccHHHHHHHHHHh--CCceEEEcCcccccChhHHHhhhhhcccccceeccc
Confidence 788888888776 67885 5999999999999999999743 2467788887 6677777899999999999999999
Q ss_pred cch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 337 KFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 337 ~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
.+| +|++++.+.+|+++|..+++++.. |+ --..++|||.+++..
T Consensus 209 QiGTvtet~e~~~~a~~~g~~~ivShRSGET--eD~~iadLAVg~~a~ 254 (296)
T d1w6ta1 209 QIGTLTETFEAIEMAKEAGYTAVVSHRSGET--EDSTIADIAVATNAG 254 (296)
T ss_dssp HHCSHHHHHHHHHHHHHTTCEEEEECCSSCC--SCCHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHHCCceEEeecCCCCC--ccchhHHHHHHcCCC
Confidence 999 999999999999999999998753 22 123688999998764
|
| >d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=4.4e-10 Score=106.26 Aligned_cols=120 Identities=24% Similarity=0.362 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEec
Q 013681 257 GYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNIK 334 (438)
Q Consensus 257 ~~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~lk 334 (438)
.+|.+|.++++..| ++|.+ .+||+|+..+||+++++|++.+ ...+-|.+|. ..+++.-+++.++..+++.+.+|
T Consensus 127 ~~t~~eli~~y~~l~~~yPI--isIEDP~~edD~~gw~~lt~~~--g~~~~ivGDDL~~Tn~~rl~~gi~~~~~nailiK 202 (292)
T d2fyma1 127 AFTSEEFTHFLEELTKQYPI--VSIEDGLDESDWDGFAYQTKVL--GDKIQLVGDDLFVTNTKILKEGIEKGIANSILIK 202 (292)
T ss_dssp EECHHHHHHHHHHHHHHSCE--EEEESCSCTTCHHHHHHHHHHH--TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred cccHHHHHHHHHHHHhcCce--EEEeCCcccccHHHHHHHHHhc--CCcEEEeCCchhccChHHHHhhhhcCCccceeec
Confidence 36899999988776 67876 5999999999999999999743 2357788887 66677778999999999999999
Q ss_pred CCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 335 LAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 335 ~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
|+.+| ++++++.+++|+++|..+++++.. |+. -..++|||.++++.
T Consensus 203 ~NQiGTvTet~ea~~la~~~g~~~ivShRSGETe--D~~iaDLAVg~ga~ 250 (292)
T d2fyma1 203 FNQIGSLTETLAAIKMAKDAGYTAVISHRSGETE--DATIADLAVGTAAG 250 (292)
T ss_dssp GGGTCSHHHHHHHHHHHHHTTCEEEEECCSSCCS--CCHHHHHHHHTTCE
T ss_pred hhhhhHHHHHHHHHHHHHHcCCeEeecCCCCCcc--cchHHHHHHHhCCC
Confidence 99999 999999999999999999998753 221 23688999998764
|
| >d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=2.7e-10 Score=107.93 Aligned_cols=119 Identities=21% Similarity=0.369 Sum_probs=100.6
Q ss_pred CCCCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEe
Q 013681 256 EGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~l 333 (438)
...|.+|.++++..| ++|.+ .+||+|++.+||+++.+|++ ..+.-|.+|. ..+++.-+++.++..+++.+.+
T Consensus 130 ~~~s~~elid~y~~li~~YPI--isIEDp~~e~D~~gw~~lt~----~~g~~iVGDDl~~Tn~~rl~~~i~~~~~naili 203 (295)
T d2al1a1 130 KWLTGPQLADLYHSLMKRYPI--VSIEDPFAEDDWEAWSHFFK----TAGIQIVADDLTVTNPKRIATAIEKKAADALLL 203 (295)
T ss_dssp GCBCHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHT----TCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEE
T ss_pred cccchHHHHHHHHHHHHhCCE--EEecCCcCccchHHHHHHhh----ccCceeecchhhcccchhhhcchhhhcccceee
Confidence 346788988888766 68886 59999999999999999986 4667888887 6667778899999999999999
Q ss_pred cCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 334 KLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 334 k~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
||+.+| +|++++.+.+|+++|+.+++++.. |+ --..++|||.++++.
T Consensus 204 K~NQiGTvtEt~ea~~la~~~g~~~ivShRSGET--eD~~iaDLAVg~~a~ 252 (295)
T d2al1a1 204 KVNQIGTLSESIKAAQDSFAAGWGVMVSHRSGET--EDTFIADLVVGLRTG 252 (295)
T ss_dssp CHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCC--SCCHHHHHHHHTTCS
T ss_pred cccchhhHHHHHHHHHHHHhcCCeeecccCCCCc--CcchhhhhhHhcCCC
Confidence 999999 999999999999999999998753 22 123688999998764
|
| >d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: Enolase domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.10 E-value=4.3e-10 Score=106.52 Aligned_cols=121 Identities=19% Similarity=0.327 Sum_probs=101.0
Q ss_pred CCCCHHHHHHHHHHh-hhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcC-CCCCHHHHHHHHHcCCccEEEe
Q 013681 256 EGYTSEEAVEVLGKL-NDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADE-SCRSLNDVQKVMQENLASVVNI 333 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L-~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dE-sl~~~~d~~~ll~~~a~d~i~l 333 (438)
...|.+|.++++..| ++|.+ .+||+|+..+||+++++|++.+ ...+-|.+|. -++++.-+++.++..+++.+.+
T Consensus 129 ~~ls~~elid~y~~l~~~YPI--isIEDp~~e~D~~gw~~lt~~~--g~k~~iVGDDL~vTn~~rl~~gi~~~a~NaiLI 204 (291)
T d2ptza1 129 TWVTAEQLRETYCKWAHDYPI--VSIEDPYDQDDFAGFAGITEAL--KGKTQIVGDDLTVTNTERIKMAIEKKACNSLLL 204 (291)
T ss_dssp CEECHHHHHHHHHHHHHHSCE--EEEECCSCTTCHHHHHHHHHHT--TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEE
T ss_pred chhhHHHHHHHHHHHhhccce--eEecCCccccchhHHHHhhhcc--CceEEEecCcccccchHHHhhccccCCccceEe
Confidence 346889999888776 57886 5999999999999999999743 2247788887 6677778899999999999999
Q ss_pred cCCcch-HHHHHHHHHHHHHcCCeEEEccCC-chhHHHHHHHHHHhhcCCc
Q 013681 334 KLAKFG-VLGTLQIIKATRKSGLHLMIDGMI-ETRLATGFALHLAAGLGCI 382 (438)
Q Consensus 334 k~~~~G-i~~~~~~~~~A~~~gi~~~~~s~~-es~ig~~a~~hla~al~~~ 382 (438)
||+.+| ++++++.+.+|+++|..+++++.. |+ --..++|||.++++.
T Consensus 205 K~NQiGTvtEt~ea~~la~~~g~~~iiShRSGET--eD~~iaDLAVg~~a~ 253 (291)
T d2ptza1 205 KINQIGTISEAIASSKLCMENGWSVMVSHRSGET--EDTYIADLVVALGSG 253 (291)
T ss_dssp CHHHHCCHHHHHHHHHHHHHTTCEEEEECCSBCC--SCCHHHHHHHHHTCS
T ss_pred cchhhhhHHHHHHHHHHHHHcCeeEEeeCCCCCc--CcchHHHHHHHhCCC
Confidence 999999 999999999999999999998753 22 123688999998764
|
| >d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.47 E-value=1.5e-06 Score=72.54 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=80.1
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCC--C--------------CCc-hHHHHHHH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVP--L--------------VTG-DQTKALVK 128 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~--------------~s~-~~~~~~~~ 128 (438)
+|++|..+.+ ..|+| ++++.|+|.+++|..|.+-++..- + |.+ ....++..
T Consensus 3 ~I~~v~~r~I--------lDSRG----~PTvevev~~~~g~~gra~~PSGAStG~~Ea~elrD~~~~~~~Gkgv~~Av~~ 70 (137)
T d1w6ta2 3 IITDVYAREV--------LDSRG----NPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYGGLGTQKAVDN 70 (137)
T ss_dssp BEEEEEEEEE--------ECTTS----CEEEEEEEEETTCCEEEEECCCC---CCSSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred ceeEEEEEEE--------EcCCC----CEEEEEEEEECCCccceeecCcCCCcccccceeccCCccccccCCcHHHHHHH
Confidence 4777776553 23333 678999999999999988776420 0 111 11233444
Q ss_pred HHH-HhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 129 VRE-ACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 129 ~~~-i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+++ +.|.|.|.++.+++.+.+.|...- ......++..|+.+|++.+.|+..++|||++|||
T Consensus 71 in~~i~~~L~G~d~~dq~~iD~~lielDgT~nks~lGaNailAvSlA~akAaA~~~~~pLy~yigg 136 (137)
T d1w6ta2 71 VNNIIAEAIIGYDVRDQQAIDRAMIALDGTPNKGKLGANAILGVSIAVARAAADYLEIPLYSYLGG 136 (137)
T ss_dssp HHHTHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred HHHHhHHHHcCCccccHHHHHHHHHHhcCcccccccchhHHHHHHHHHHHHHHHHcCCcHHHhhcC
Confidence 444 689999999999988877776531 1233467889999999999999999999999998
|
| >d2ptza2 d.54.1.1 (A:0-138) Enolase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.22 E-value=4.7e-06 Score=69.68 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=78.1
Q ss_pred eeeEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCCCCc--h----------------HHHH
Q 013681 64 WVDVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPLVTG--D----------------QTKA 125 (438)
Q Consensus 64 ~~~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~s~--~----------------~~~~ 125 (438)
+|+|++|..+.+ -.|+| .+++.|+|.+++|.. .+ +.|...-++ | ...+
T Consensus 1 ~M~I~~i~~r~I--------lDSRG----~PTvevev~~~~g~~-ra-~~PsGaStG~~Ea~elrd~~~~~~~Gkgv~~A 66 (139)
T d2ptza2 1 HMTIQKVHGREV--------LDSRG----NPTVEVEVTTEKGVF-RS-AVPSGASTGVYEACELRDGDKKRYVGKGCLQA 66 (139)
T ss_dssp TTSCCEEEEEEE--------ECTTS----CEEEEEEEEETTEEE-EE-ECCBCSSCCTTSCCCCCCCCTTTGGGTCCHHH
T ss_pred CCeEEEEEEEEE--------EcCCC----CeEEEEEEEECCCce-eE-eccccccccchhhhhcCCCcccccccchHHHH
Confidence 488888887653 23333 678999999998753 33 334321111 1 1223
Q ss_pred HHHHH-HHhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 126 LVKVR-EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 126 ~~~~~-~i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
+..++ .+.|.|.|.++.+++.+++.|.+.- .......+..|+.+|++.+.|+..++|||++|++
T Consensus 67 v~nin~~I~~~L~g~~~~dQ~~iD~~li~lDgt~nks~lGaNailAvS~A~akA~A~~~~~pLy~yi~~ 135 (139)
T d2ptza2 67 VKNVNEVIGPALIGRDELKQEELDTLMLRLDGTPNKGKLGANAILGCSMAISKAAAAAKGVPLYRYLAS 135 (139)
T ss_dssp HHHHHHTHHHHHTTCCTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHhhhccchhhcccchhhHHHHHHHHHHHhCCcchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 33343 3789999999999999988887642 1123467899999999999999999999999864
|
| >d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=9.1e-06 Score=67.90 Aligned_cols=112 Identities=21% Similarity=0.156 Sum_probs=79.6
Q ss_pred eEEEEEEEEEEeeccCCcccCCeeEeeeeEEEEEEEEcCCcEEEEEEecCCC----------------CCc-hHHHHHHH
Q 013681 66 DVQRAEGRELNVALSAPLSLGLSSVENVENVAIRVELSNGCVGWGEVAVVPL----------------VTG-DQTKALVK 128 (438)
Q Consensus 66 ~I~~i~~~~~~~pl~~p~~~s~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~----------------~s~-~~~~~~~~ 128 (438)
||++|..+.+ -.|+| ++++.|+|.+++|..|.+-++..-. |.+ .....+..
T Consensus 2 kI~~v~~r~I--------lDSRG----~PTvevev~~~~g~~g~a~~PsGaStG~~Ea~elrD~~~~~~~Gkgv~~av~~ 69 (139)
T d2fyma2 2 KIVKIIGREI--------IDSRG----NPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAA 69 (139)
T ss_dssp BEEEEEEEEE--------ECTTS----CEEEEEEEEETTSCEEEEECCCCCSSCSSSCCCCCCCCTTSGGGTCCHHHHHH
T ss_pred eeEEEEEEEE--------EcCCC----CeEEEEEEEECCCCEeEEECCcccCccccccccccCCChhhhcccccchhhHH
Confidence 5777766543 23333 6889999999999999988764210 111 11223333
Q ss_pred HH-HHhhHhcCCCCCCHHHHHHHHHHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 129 VR-EACQFLRQSPPTTLNFALDEIARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 129 ~~-~i~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
++ .+.|.|+|.++.+++.+.+.|...- .......+..|+.+|++.+.|+..++|||++|++
T Consensus 70 in~~i~~~Lig~~~~dq~~iD~~li~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d2fyma2 70 VNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAE 135 (139)
T ss_dssp HHTHHHHHHTTSBTTCHHHHHHHHHHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHhCCchhhhHHHHHHHHhccCCccccccchHHHHHHHHHHHHHHHHHcCCCHHHHhHh
Confidence 44 3689999999999998888776531 1223367889999999999999999999999875
|
| >d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.81 E-value=0.00011 Score=61.37 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=66.6
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCCCCc------------------hHHHHHHHHHH-HhhHhc--CCCCCCHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPLVTG------------------DQTKALVKVRE-ACQFLR--QSPPTTLNFALDEI 151 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~~s~------------------~~~~~~~~~~~-i~~~l~--g~~~~~~~~~~~~l 151 (438)
++++.|+|.|++| .|.+-++ ...-++ .....+..+++ +.|.|+ |.++.++..+.+.|
T Consensus 16 ~PTvev~v~~~~g-~~ra~~P-SGaStG~~EA~elrD~~~~~~~gkgV~~av~nin~~i~~~Li~~g~~~~dq~~iD~~l 93 (141)
T d2al1a2 16 NPTVEVELTTEKG-VFRSIVP-SGASTGVHEALEMRDGDKSKWMGKGVLHAVKNVNDVIAPAFVKANIDVKDQKAVDDFL 93 (141)
T ss_dssp CEEEEEEEEETTE-EEEEECC-BCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHHH
T ss_pred CcEEEEEEEECCC-eEEEeec-cCCCCCcceeeeecCCCccccccccchhHHHHHHHHhHHHHhhcCCchhhHHHHHHHH
Confidence 6789999999987 4765543 211111 11223444443 678887 78888988888777
Q ss_pred HHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 152 ARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 152 ~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
...- .......+..|+.+|++.+.++..++|||++|++
T Consensus 94 i~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yl~~ 135 (141)
T d2al1a2 94 ISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLYKHLAD 135 (141)
T ss_dssp HHHHCSTTSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHccCCcchhhhhhHHHHHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 6531 1123367899999999999999999999999975
|
| >d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: European lobster (Homarus vulgaris) [TaxId: 6707]
Probab=97.61 E-value=0.00037 Score=57.67 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=64.4
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCCCC-----------------c-hHHHHHHHHHH-HhhHhc--CCCCCCHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPLVT-----------------G-DQTKALVKVRE-ACQFLR--QSPPTTLNFALDEI 151 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~~s-----------------~-~~~~~~~~~~~-i~~~l~--g~~~~~~~~~~~~l 151 (438)
.+++.|+|.+++| +|.+-+ |...-+ + ....++..+++ +.|.|+ |.++.++..+.+.|
T Consensus 16 ~PTVev~v~~~~~-~~ra~~-PSGAStG~~EA~elrD~~~~~~~Gkgv~~Av~nin~~i~~~Li~~g~~~~dq~~iD~~L 93 (139)
T d1pdza2 16 NPTVEVDLYTSKG-LFRAAV-PSGASTGVHEALEMRDGDKSKYHGKSVFNAVKNVNDVIVPEIIKSGLKVTQQKECDEFM 93 (139)
T ss_dssp CEEEEEEEEETTE-EEEEEC-CCCBSSCSSSCBCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHTCCTTCHHHHHHHH
T ss_pred CcEEEEEEEECCC-eEEEec-ccCcCCcchhheecccCCccccccccccceeecchhhhhHHHHhcCccccchhhhHHHH
Confidence 5789999999764 455443 322111 1 11223333443 678887 67888988887777
Q ss_pred HHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 152 ARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 152 ~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
...- .......+..|+.+|++.+.++..|+|||++|++
T Consensus 94 i~lDgT~nks~lGaNailAvS~A~akAaA~~~~~pLy~yi~~ 135 (139)
T d1pdza2 94 CKLDGTENKSSLGANAILGVSLAICKAGAAELGIPLYRHIAN 135 (139)
T ss_dssp HHHHCSSSSTTTCHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HhhcCccchhhhhhHHHHHHHHHHHHHHHHHcCCcHHHHhhc
Confidence 6531 1123367899999999999999999999999975
|
| >d2akza2 d.54.1.1 (A:1-139) Enolase {Human (Homo sapiens), gamma isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: Enolase species: Human (Homo sapiens), gamma isoform [TaxId: 9606]
Probab=97.50 E-value=0.00055 Score=56.73 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=65.7
Q ss_pred eeEEEEEEEEcCCcEEEEEEecCCCCCc--h----------------HHHHHHHHHH-HhhHhc--CCCCCCHHHHHHHH
Q 013681 93 VENVAIRVELSNGCVGWGEVAVVPLVTG--D----------------QTKALVKVRE-ACQFLR--QSPPTTLNFALDEI 151 (438)
Q Consensus 93 ~~~~lV~v~t~~G~~G~GE~~~~~~~s~--~----------------~~~~~~~~~~-i~~~l~--g~~~~~~~~~~~~l 151 (438)
.+++.|+|.+++| +|.+-+ |....++ + ...++..+++ +.|.|+ |.++.+++.+++.|
T Consensus 16 ~PTvevev~~~~g-~~~a~~-PsGaStG~~Ea~elrd~~~~~~~gkgV~~Av~~i~~~i~~~Li~~g~~~~dQ~~iD~~L 93 (139)
T d2akza2 16 NPTVEVDLYTAKG-LFRAAV-PSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLM 93 (139)
T ss_dssp CEEEEEEEEETTE-EEEEEC-CBCSSCCTTSCCCCCCCCTTSGGGTCCHHHHHHHHHTHHHHHHHHCCCTTCHHHHHHHH
T ss_pred CeEEEEEEEECCC-eEEEec-ccccccchhhhhhccccccccccCCchhhHHHhhHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 5789999999875 354443 3221111 1 1223333443 788886 89999998888887
Q ss_pred HHHC----CCChhhHHHHHHHHHHHHHHHHHCCCCHHHHhCC
Q 013681 152 ARIL----PGSEFASVRAGVEMALIDAVANSIDIPLWRLFGG 189 (438)
Q Consensus 152 ~~~~----~g~~~~sa~~aie~AL~Dl~gk~~g~Pl~~Llgg 189 (438)
.+.- .....+.+..|+.+|++.+.|+..++|||++|++
T Consensus 94 ~~lDgt~nks~lGaNailAvSlA~akA~A~~~~~pLy~yi~~ 135 (139)
T d2akza2 94 LELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQ 135 (139)
T ss_dssp HHHHCSTTCTTTCHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHccCccchhhcChHHHHHHHHHHHHHHHHHcCCcHHHHhHh
Confidence 6531 1123367889999999999999999999999864
|
| >d1kcza2 d.54.1.1 (A:1-160) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=96.95 E-value=0.0042 Score=51.27 Aligned_cols=96 Identities=22% Similarity=0.372 Sum_probs=68.6
Q ss_pred eeeEEEEEEEEcCCcEEEEEEecCCC--CCc-h----HHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHH-CCCC-hhh
Q 013681 92 NVENVAIRVELSNGCVGWGEVAVVPL--VTG-D----QTKALVKV-REACQFLRQSPPTTLNFALDEIARI-LPGS-EFA 161 (438)
Q Consensus 92 ~~~~~lV~v~t~~G~~G~GE~~~~~~--~s~-~----~~~~~~~~-~~i~~~l~g~~~~~~~~~~~~l~~~-~~g~-~~~ 161 (438)
..+.+.|.+..+||.+.||.|+..-+ .++ + ..+....+ +.+.|.|.|.+.......-..+... +.|. ...
T Consensus 49 ~gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~~~i~~~e~~v~p~L~g~d~~~Fr~~a~~~d~~~~~g~~LHt 128 (160)
T d1kcza2 49 KGESISVLLVLEDGQVAHGDCAAVQYSGAGGRDPLFLAKDFIPVIEKEIAPKLIGREITNFKPMAEEFDKMTVNGNRLHT 128 (160)
T ss_dssp ECCEEEEEEEETTSCEEEEEECCCTTTTSTTSCSCCCHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHCEETTEECCH
T ss_pred cCcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhcccCCcchhH
Confidence 35788899999999999999997632 111 1 12233333 3488999999999988777777652 2332 235
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHh
Q 013681 162 SVRAGVEMALIDAVANSIDIPLWRLF 187 (438)
Q Consensus 162 sa~~aie~AL~Dl~gk~~g~Pl~~Ll 187 (438)
+++.||.+||+|+.++....-..+.+
T Consensus 129 AiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kcza2 129 AIRYGITQAILDAVAKTRKVTMAEVI 154 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCCcHHHHh
Confidence 78999999999999999876555544
|
| >d1kkoa2 d.54.1.1 (A:1-160) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Enolase N-terminal domain-like superfamily: Enolase N-terminal domain-like family: Enolase N-terminal domain-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=96.93 E-value=0.0044 Score=51.14 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=67.6
Q ss_pred eeeEEEEEEEEcCCcEEEEEEecCCC--CCc-h----HHHHHHHH-HHHhhHhcCCCCCCHHHHHHHHHHH-CCCC-hhh
Q 013681 92 NVENVAIRVELSNGCVGWGEVAVVPL--VTG-D----QTKALVKV-REACQFLRQSPPTTLNFALDEIARI-LPGS-EFA 161 (438)
Q Consensus 92 ~~~~~lV~v~t~~G~~G~GE~~~~~~--~s~-~----~~~~~~~~-~~i~~~l~g~~~~~~~~~~~~l~~~-~~g~-~~~ 161 (438)
..+.+.|.+..+||.+.||.|+..-+ .++ + ..+....+ +.+.|.|.|.+.......-..+... +.|. ...
T Consensus 49 ~gesisV~l~L~dG~va~GDCaaVqySGagGRDPLF~A~~~i~~~e~~v~p~L~g~d~~~Fr~~A~~~d~~~~~g~~LHt 128 (160)
T d1kkoa2 49 AGECVSVQLILENGAVAVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHIKPLLEGRDVDAFLPNARFFDKLRIDGNLLHT 128 (160)
T ss_dssp EEEEEEEEEEETTSCEEEEEECCCTTTTSTTCCCCCCHHHHHHHHHHHTHHHHTTCBCSCSHHHHHHHHHCEETTEECCH
T ss_pred cCcEEEEEEEeCCCCEEEeeehheeecCCCCCCccccHHHHHHHHHHhhhHHHhCCcHHHHHHHHHHHhhcccCCCchhH
Confidence 35788899999999999999997632 111 1 12233333 3488999999999887766666543 2332 235
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHh
Q 013681 162 SVRAGVEMALIDAVANSIDIPLWRLF 187 (438)
Q Consensus 162 sa~~aie~AL~Dl~gk~~g~Pl~~Ll 187 (438)
+++.||.+||+|+.++....-..+.+
T Consensus 129 AiRYGvSQALL~A~A~a~r~tmaeVi 154 (160)
T d1kkoa2 129 AVRYGLSQALLDATALASGRLKTEVV 154 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCccHHHHH
Confidence 78999999999999999866555543
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.016 Score=54.60 Aligned_cols=123 Identities=14% Similarity=0.213 Sum_probs=86.5
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCCc--EEEEeC----CC
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPHC--SFILDA----NE 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~~--~L~vDA----N~ 256 (438)
.+.|+...+.||..+-|+.+. +++ --++.|++||+ ++++. .+|+-+ ++
T Consensus 144 ~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~ 223 (330)
T d1ps9a1 144 ARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVED 223 (330)
T ss_dssp HHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTT
T ss_pred HHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccC
Confidence 455677788999999999862 121 23667899998 57664 334433 56
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceEe---------cCCCCC--ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHc
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLFE---------QPVHRD--DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQE 325 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~iE---------qPl~~~--d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~ 325 (438)
+++.++++++++.|++.++. ++. .|.... ....+..+++.+|+.+++||..-=.+.+++..+++|+.
T Consensus 224 g~~~~~~~~~~~~l~~~g~d--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~ 301 (330)
T d1ps9a1 224 GGTFAETVELAQAIEAAGAT--IINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSR 301 (330)
T ss_dssp CCCHHHHHHHHHHHHHHTCS--EEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhhhh--hhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHC
Confidence 78999999999999986653 332 222111 11223445555667889999988888999999999999
Q ss_pred CCccEEEe
Q 013681 326 NLASVVNI 333 (438)
Q Consensus 326 ~a~d~i~l 333 (438)
+.+|+|-+
T Consensus 302 g~~D~V~~ 309 (330)
T d1ps9a1 302 GDADMVSM 309 (330)
T ss_dssp TSCSEEEE
T ss_pred CCcchhHh
Confidence 99998765
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=96.48 E-value=0.039 Score=51.91 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=86.2
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHhh-CCCcEEEEeCC----CCC
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHAV-HPHCSFILDAN----EGY 258 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~~-~~~~~L~vDAN----~~~ 258 (438)
.+.|+...+.||..+.|+.+. +++ --++.+++||+. ...+-+++-++ +++
T Consensus 146 ~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~ 225 (337)
T d1z41a1 146 KQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGL 225 (337)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSC
T ss_pred HHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCcc
Confidence 455677789999999999852 121 136678999985 45666676654 567
Q ss_pred CHHHHHHHHHHhhhCCCCCceEe-------cCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFE-------QPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iE-------qPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
+.++++++++.|++.++. +++ .|-..........+++.+|+.+++||..-=.+.+++..+++|+.+.+|+|
T Consensus 226 ~~~~~~~~~~~l~~~g~d--~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V 303 (337)
T d1z41a1 226 DIADHIGFAKWMKEQGVD--LIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLI 303 (337)
T ss_dssp CHHHHHHHHHHHHHTTCC--EEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEE
T ss_pred chhhhHHHHHHHHHcCCc--ccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCccee
Confidence 999999999999988764 332 22111111122344444556789999887788899999999999999987
Q ss_pred Ee
Q 013681 332 NI 333 (438)
Q Consensus 332 ~l 333 (438)
.+
T Consensus 304 ~~ 305 (337)
T d1z41a1 304 FI 305 (337)
T ss_dssp EE
T ss_pred hh
Confidence 65
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=95.98 E-value=0.033 Score=51.65 Aligned_cols=137 Identities=18% Similarity=0.250 Sum_probs=97.9
Q ss_pred ceeeeeeeCCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhhCCCcEEEEeCCC
Q 013681 193 SLSTAITIPAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAVHPHCSFILDANE 256 (438)
Q Consensus 193 ~ip~~~~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~~~~~~L~vDAN~ 256 (438)
.-|+...+...+|+++.+.+ ++.+.||..|-+.+|- +++.-.+.++++++.. ++.+.|=.--
T Consensus 54 e~p~~~Ql~g~~p~~~~~aa-~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvK~Rl 131 (305)
T d1vhna_ 54 ERNVAVQIFGSEPNELSEAA-RILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV-SGKFSVKTRL 131 (305)
T ss_dssp CTTEEEEEECSCHHHHHHHH-HHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC-SSEEEEEEES
T ss_pred CCCeEEEEeccchhhhhhhh-hhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhc-cccccccccc
Confidence 34677788888999998766 5568899999999982 3455566777887643 2233333333
Q ss_pred CCCHHHHHHHHHHhhhCCCCCceE-------ecCC-CCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc
Q 013681 257 GYTSEEAVEVLGKLNDMGVIPVLF-------EQPV-HRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (438)
Q Consensus 257 ~~s~~~A~~~l~~L~~~~l~~~~i-------EqPl-~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~ 328 (438)
+|+.++..++++.+.+.++. +| +|.. .+-||+..+++. ..+||...-.+.+.+|..++++.-.+
T Consensus 132 G~d~~~~~~~~~~l~~~G~~--~itvH~Rt~~q~~~~~a~~~~i~~~~------~~ipvi~NGdI~s~~d~~~~l~~tg~ 203 (305)
T d1vhna_ 132 GWEKNEVEEIYRILVEEGVD--EVFIHTRTVVQSFTGRAEWKALSVLE------KRIPTFVSGDIFTPEDAKRALEESGC 203 (305)
T ss_dssp CSSSCCHHHHHHHHHHTTCC--EEEEESSCTTTTTSSCCCGGGGGGSC------CSSCEEEESSCCSHHHHHHHHHHHCC
T ss_pred CcccchhhHHHHHHHHhCCc--EEEechhhhhhccccchhhhHHHhhh------hhhhhhcccccccHHHHHHHHHhcCC
Confidence 56656677889999988874 44 4444 355788887764 36899888899999999999987679
Q ss_pred cEEEecCCcch
Q 013681 329 SVVNIKLAKFG 339 (438)
Q Consensus 329 d~i~lk~~~~G 339 (438)
|.+++==...|
T Consensus 204 dgVMiGRgal~ 214 (305)
T d1vhna_ 204 DGLLVARGAIG 214 (305)
T ss_dssp SEEEESGGGTT
T ss_pred CeEehhHHHHH
Confidence 99998555444
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=95.64 E-value=0.073 Score=50.46 Aligned_cols=122 Identities=10% Similarity=0.186 Sum_probs=82.4
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHhh-CCC-cEEEEeC-------
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHAV-HPH-CSFILDA------- 254 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~~-~~~-~~L~vDA------- 254 (438)
.+.|+...+.||..|-|..+. +++ --++.+++||+. +++ +-+|+-+
T Consensus 163 ~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~ 242 (363)
T d1vyra_ 163 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 242 (363)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTB
T ss_pred HHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccch
Confidence 455677788999999999862 111 246788999984 555 4456543
Q ss_pred -CCCCCHHHHHHHHHHhhhCCCCCceEecCCC--CCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEE
Q 013681 255 -NEGYTSEEAVEVLGKLNDMGVIPVLFEQPVH--RDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVV 331 (438)
Q Consensus 255 -N~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~--~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i 331 (438)
.++++.++++++++.|++.++. ||+=-.. .....-...+++.+|+.+++||+..= ..+++..+++|+.+.+|.|
T Consensus 243 ~~gg~~~~e~~~~~~~l~~~gvd--~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G-~~t~~~ae~~l~~G~~DlV 319 (363)
T d1vyra_ 243 DNGPNEEADALYLIEELAKRGIA--YLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAG-AYTAEKAEDLIGKGLIDAV 319 (363)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCS--EEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEES-SCCHHHHHHHHHTTSCSEE
T ss_pred hhcccchHHHHHHHHHHHhcCCe--eeecccCCccCCccccHHHHHHHHHhcCceEEecC-CCCHHHHHHHHHCCCccee
Confidence 2567889999999999998874 6643211 11111112333334456888887765 4589999999999999987
Q ss_pred Ee
Q 013681 332 NI 333 (438)
Q Consensus 332 ~l 333 (438)
-+
T Consensus 320 ~~ 321 (363)
T d1vyra_ 320 AF 321 (363)
T ss_dssp EE
T ss_pred hh
Confidence 64
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.71 E-value=0.54 Score=43.64 Aligned_cols=125 Identities=9% Similarity=0.059 Sum_probs=74.2
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC--cEEEEeCC-----
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH--CSFILDAN----- 255 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~--~~L~vDAN----- 255 (438)
.+.|+..++.||..+-|+.+. +++ --++.+++||+ ++++ +-+|+-++
T Consensus 152 ~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~ 231 (340)
T d1djqa1 152 VDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGP 231 (340)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCT
T ss_pred HHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccccC
Confidence 455677789999999999862 122 13667899998 5776 34444332
Q ss_pred CCCCHHHHHHHHHHhhhCCCC---------CceEecCCCCC--ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHH
Q 013681 256 EGYTSEEAVEVLGKLNDMGVI---------PVLFEQPVHRD--DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQ 324 (438)
Q Consensus 256 ~~~s~~~A~~~l~~L~~~~l~---------~~~iEqPl~~~--d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~ 324 (438)
+..+.+.....+..+.+..+. ..|.+++.+.. +......+++.+|+.+++||..-=.+.++++.+++|+
T Consensus 232 ~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~ 311 (340)
T d1djqa1 232 GQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVT 311 (340)
T ss_dssp TSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHHHHH
T ss_pred CCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHH
Confidence 122333333333444433321 01223333221 1112233444555678999987778899999999999
Q ss_pred cCCccEEEe
Q 013681 325 ENLASVVNI 333 (438)
Q Consensus 325 ~~a~d~i~l 333 (438)
.+.+|.|-+
T Consensus 312 ~G~aDlV~~ 320 (340)
T d1djqa1 312 KGYADIIGC 320 (340)
T ss_dssp TTSCSBEEE
T ss_pred CCCccchhh
Confidence 999998754
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=91.71 E-value=0.72 Score=39.96 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
+.++|++..+.|.+.+++ .||=+++..+ .+..++|++. ...+-|..| ++.+.++++++++.+ +++++-- ..
T Consensus 25 ~~~~a~~~~~al~~~Gi~--~iEitl~tp~a~~~I~~l~~~---~p~~~vGaG-TV~~~~~~~~a~~aG-a~FivSP-~~ 96 (213)
T d1wbha1 25 KLEHAVPMAKALVAGGVR--VLNVTLRTECAVDAIRAIAKE---VPEAIVGAG-TVLNPQQLAEVTEAG-AQFAISP-GL 96 (213)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEESCSTTHHHHHHHHHHH---CTTSEEEEE-SCCSHHHHHHHHHHT-CSCEEES-SC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHHH---CCCCeeecc-ccccHHHHHHHHHCC-CcEEECC-CC
Confidence 689999999999999986 8999997654 3455566542 245655555 889999999999987 5654433 22
Q ss_pred chHHHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 338 FGVLGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
..++++.|+++|++++++.+.-|-
T Consensus 97 -----~~~v~~~a~~~~i~~iPGv~TpsE 120 (213)
T d1wbha1 97 -----TEPLLKAATEGTIPLIPGISTVSE 120 (213)
T ss_dssp -----CHHHHHHHHHSSSCEEEEESSHHH
T ss_pred -----CHHHHHHHHhcCCCccCCcCCHHH
Confidence 257889999999999999987554
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.09 E-value=1.1 Score=42.07 Aligned_cols=121 Identities=17% Similarity=0.233 Sum_probs=75.6
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCC-cEEEEeC----CC-
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPH-CSFILDA----NE- 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~-~~L~vDA----N~- 256 (438)
.+.|+..++.||..|.|+.+. +++ --++.+++||+ ++++ +.+++.. ++
T Consensus 166 ~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~ 245 (374)
T d1gwja_ 166 RQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGL 245 (374)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTC
T ss_pred HHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccccCC
Confidence 455777789999999999862 111 24678899998 4665 3344332 11
Q ss_pred CC--CHHHHHHHHHHhhhCCCCCceEecCCCC---C-ChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccE
Q 013681 257 GY--TSEEAVEVLGKLNDMGVIPVLFEQPVHR---D-DWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASV 330 (438)
Q Consensus 257 ~~--s~~~A~~~l~~L~~~~l~~~~iEqPl~~---~-d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~ 330 (438)
.. ....+....+.|+..++....+.+|-.. . ....++ +.+++.+++||..--.+ +....+++|+.+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~aDl 321 (374)
T d1gwja_ 246 TDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFR---EQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADA 321 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBCCCCCTTHH---HHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSE
T ss_pred cccchHHHHHHhhccccccCceEEEeccCcccCCCcchhHHHH---HHHHHHcCCCEEEECCc-CHHHHHHHHHcCCCcE
Confidence 11 2334566677788777643345666421 1 112333 22334688998776665 7888899999999998
Q ss_pred EEe
Q 013681 331 VNI 333 (438)
Q Consensus 331 i~l 333 (438)
|-+
T Consensus 322 V~~ 324 (374)
T d1gwja_ 322 VAF 324 (374)
T ss_dssp EEE
T ss_pred ehh
Confidence 764
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=91.07 E-value=0.93 Score=39.17 Aligned_cols=95 Identities=9% Similarity=0.068 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
+.+++.+..+.|.+-++. .||=+++..+ ++.++++++ +...+-|..| ++.+.++++++++.+ +++++- |..
T Consensus 24 ~~~~~~~~~~al~~~Gi~--~iEitl~~~~a~~~I~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aG-a~FivS-P~~ 95 (212)
T d1vhca_ 24 NADDILPLADTLAKNGLS--VAEITFRSEAAADAIRLLRA---NRPDFLIAAG-TVLTAEQVVLAKSSG-ADFVVT-PGL 95 (212)
T ss_dssp SGGGHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHHHH---HCTTCEEEEE-SCCSHHHHHHHHHHT-CSEEEC-SSC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHh---cCCCceEeee-ecccHHHHHHHHhhC-CcEEEC-CCC
Confidence 578999999999999986 8999997654 344555553 2345666665 888999999999986 666543 332
Q ss_pred chHHHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 338 FGVLGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
. .++++.|++++++++++.+.-|-
T Consensus 96 ~-----~~v~~~a~~~~i~~iPGv~TpsE 119 (212)
T d1vhca_ 96 N-----PKIVKLCQDLNFPITPGVNNPMA 119 (212)
T ss_dssp C-----HHHHHHHHHTTCCEECEECSHHH
T ss_pred C-----HHHHHHHHhcCCCccCCcCCHHH
Confidence 2 57899999999999999986443
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=91.04 E-value=0.43 Score=41.52 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCC-hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDD-WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d-~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
+++++++.++.|.+.+++ .||=+++..+ ++.++.+++ +.-.+-|..| ++.+.++++++++.+ +++++- |..
T Consensus 27 ~~~~a~~~~~al~~~Gi~--~iEitl~~p~a~~~i~~l~~---~~p~~~vGaG-TV~~~~~~~~a~~aG-a~Fivs-P~~ 98 (216)
T d1mxsa_ 27 REEDILPLADALAAGGIR--TLEVTLRSQHGLKAIQVLRE---QRPELCVGAG-TVLDRSMFAAVEAAG-AQFVVT-PGI 98 (216)
T ss_dssp CGGGHHHHHHHHHHTTCC--EEEEESSSTHHHHHHHHHHH---HCTTSEEEEE-CCCSHHHHHHHHHHT-CSSEEC-SSC
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH---hCCCcceeee-eeecHHHHHHHHhCC-CCEEEC-CCC
Confidence 479999999999999986 8999997543 344455554 1235666666 888999999999987 465443 333
Q ss_pred chHHHHHHHHHHHHHcCCeEEEccCCchhH
Q 013681 338 FGVLGTLQIIKATRKSGLHLMIDGMIETRL 367 (438)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~i 367 (438)
..++++.|+++|++++++.+.-|-+
T Consensus 99 -----~~~v~~~a~~~~i~~iPGv~TpsEi 123 (216)
T d1mxsa_ 99 -----TEDILEAGVDSEIPLLPGISTPSEI 123 (216)
T ss_dssp -----CHHHHHHHHHCSSCEECEECSHHHH
T ss_pred -----cHHHHHHHHhcCCCccCCcCCHHHH
Confidence 2678899999999999999865543
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=87.71 E-value=2.9 Score=35.91 Aligned_cols=142 Identities=12% Similarity=0.126 Sum_probs=101.6
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
+...++++..+.++.+.+.|++++.+-... ..-.+.++.+|+.+|+ +.|=|..-.+.+++.+..+. |.. |
T Consensus 23 l~~~~~~~a~~~~~al~~~Gi~~iEitl~~--p~a~~~i~~l~~~~p~--~~vGaGTV~~~~~~~~a~~a----Ga~--F 92 (216)
T d1mxsa_ 23 ITIAREEDILPLADALAAGGIRTLEVTLRS--QHGLKAIQVLREQRPE--LCVGAGTVLDRSMFAAVEAA----GAQ--F 92 (216)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEESSS--THHHHHHHHHHHHCTT--SEEEEECCCSHHHHHHHHHH----TCS--S
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHhCCC--cceeeeeeecHHHHHHHHhC----CCC--E
Confidence 445688889999999999999999998864 3457888999998887 56777888898886665543 432 5
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-ch-HHHHHHHHHHHHHcCCeE
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~G-i~~~~~~~~~A~~~gi~~ 357 (438)
+=-|.-. .++.+.|. +.++|..-| +.|+.++..+++.+ ++++-+=|.- .| ..-...+...- -++++
T Consensus 93 ivsP~~~---~~v~~~a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vKlFPA~~~~g~~~ikal~~p~--p~~~f 160 (216)
T d1mxsa_ 93 VVTPGIT---EDILEAGV----DSEIPLLPG--ISTPSEIMMGYALG-YRRFKLFPAEISGGVAAIKAFGGPF--GDIRF 160 (216)
T ss_dssp EECSSCC---HHHHHHHH----HCSSCEECE--ECSHHHHHHHHTTT-CCEEEETTHHHHTHHHHHHHHHTTT--TTCEE
T ss_pred EECCCCc---HHHHHHHH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEeccccccccHHHHHHHhccc--ccCce
Confidence 6666643 34444443 578888776 56899999999875 8898888864 44 54444433322 37999
Q ss_pred EEccCC
Q 013681 358 MIDGMI 363 (438)
Q Consensus 358 ~~~s~~ 363 (438)
++++-.
T Consensus 161 iptGGV 166 (216)
T d1mxsa_ 161 CPTGGV 166 (216)
T ss_dssp EEBSSC
T ss_pred eccCCC
Confidence 987654
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=86.81 E-value=5.2 Score=34.12 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=101.8
Q ss_pred eCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCce
Q 013681 200 IPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPVL 279 (438)
Q Consensus 200 i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~~ 279 (438)
+...+.++..+.++.+.+.|+++|-+-... +.-.+.++++++.+|+ +.|=|..-.+.+++.+..+ .|.+ |
T Consensus 20 lr~~~~~~~~~~~~al~~~Gi~~iEitl~~--~~a~~~I~~l~~~~p~--~~vGaGTV~~~~~~~~a~~----aGa~--F 89 (212)
T d1vhca_ 20 IALDNADDILPLADTLAKNGLSVAEITFRS--EAAADAIRLLRANRPD--FLIAAGTVLTAEQVVLAKS----SGAD--F 89 (212)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS--TTHHHHHHHHHHHCTT--CEEEEESCCSHHHHHHHHH----HTCS--E
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHhcCCC--ceEeeeecccHHHHHHHHh----hCCc--E
Confidence 344678888888999999999999999864 3446778888888887 5677788889888766544 3443 6
Q ss_pred EecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCC-cch-HHHHHHHHHHHHHcCCeE
Q 013681 280 FEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLA-KFG-VLGTLQIIKATRKSGLHL 357 (438)
Q Consensus 280 iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~-~~G-i~~~~~~~~~A~~~gi~~ 357 (438)
+=-|.-. +++.+.|. +.++|..-| +.++.++..+++.+ ++++-+=|. ..| +.-.+.+... --++++
T Consensus 90 ivSP~~~---~~v~~~a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vK~FPA~~~gG~~~lkal~~p--~p~~~~ 157 (212)
T d1vhca_ 90 VVTPGLN---PKIVKLCQ----DLNFPITPG--VNNPMAIEIALEMG-ISAVKFFPAEASGGVKMIKALLGP--YAQLQI 157 (212)
T ss_dssp EECSSCC---HHHHHHHH----HTTCCEECE--ECSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHHHTT--TTTCEE
T ss_pred EECCCCC---HHHHHHHH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEEccccccchHHHHHHHhcc--ccCCeE
Confidence 7667643 34555554 468888776 56899999999875 889999886 465 5544443332 226999
Q ss_pred EEccCC
Q 013681 358 MIDGMI 363 (438)
Q Consensus 358 ~~~s~~ 363 (438)
++++-.
T Consensus 158 ~ptGGV 163 (212)
T d1vhca_ 158 MPTGGI 163 (212)
T ss_dssp EEBSSC
T ss_pred EecCCC
Confidence 997654
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=86.72 E-value=2.1 Score=36.47 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHhhhCCCCCceEecCCCCCCh-hhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc
Q 013681 259 TSEEAVEVLGKLNDMGVIPVLFEQPVHRDDW-SGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK 337 (438)
Q Consensus 259 s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~-~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~ 337 (438)
+.++|++..+.|-+.++. ++|=+++..+. +..++|++. ....+-|..+ ++.+.++++++++.+ +++++ -|
T Consensus 19 ~~~~a~~~~~al~~~Gi~--~iEitlr~p~a~~~i~~l~~~--~~~~~~vGaG-TV~~~~~~~~a~~aG-a~fiv-sP-- 89 (202)
T d1wa3a1 19 SVEEAKEKALAVFEGGVH--LIEITFTVPDADTVIKELSFL--KEKGAIIGAG-TVTSVEQCRKAVESG-AEFIV-SP-- 89 (202)
T ss_dssp SHHHHHHHHHHHHHTTCC--EEEEETTSTTHHHHHHHTHHH--HHTTCEEEEE-SCCSHHHHHHHHHHT-CSEEE-CS--
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHh--cCCCcEEEec-ccccHHHHHHHHhhc-ccEEe-CC--
Confidence 589999999999999986 89999986553 444555431 1134555544 788999999999987 66653 33
Q ss_pred chHHHHHHHHHHHHHcCCeEEEccCCchh
Q 013681 338 FGVLGTLQIIKATRKSGLHLMIDGMIETR 366 (438)
Q Consensus 338 ~Gi~~~~~~~~~A~~~gi~~~~~s~~es~ 366 (438)
|+. .++++.|.++|++++++.+.-|-
T Consensus 90 -~~~--~~v~~~~~~~~i~~iPGv~TpsE 115 (202)
T d1wa3a1 90 -HLD--EEISQFCKEKGVFYMPGVMTPTE 115 (202)
T ss_dssp -SCC--HHHHHHHHHHTCEEECEECSHHH
T ss_pred -CCc--HHHHHHHHhcCCceeCCcCcHHH
Confidence 322 57899999999999999876443
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=86.39 E-value=5 Score=34.30 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=102.1
Q ss_pred eeCCCCHHHHHHHHHHHhhcCCcEEEEecCCCchHHHHHHHHHHhhCCCcEEEEeCCCCCCHHHHHHHHHHhhhCCCCCc
Q 013681 199 TIPAVSPAEASELASKYCKLGFSTLKLNVGRNITADFDVLQAIHAVHPHCSFILDANEGYTSEEAVEVLGKLNDMGVIPV 278 (438)
Q Consensus 199 ~i~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~d~~~di~~l~aiR~~~~~~~L~vDAN~~~s~~~A~~~l~~L~~~~l~~~ 278 (438)
.+...++++..+.++.+.+.|+++|.+-... ..-.+.++.+++.+|++ .+=|..-.+.+++.+..+ .|..
T Consensus 20 vlr~~~~~~a~~~~~al~~~Gi~~iEitl~t--p~a~~~I~~l~~~~p~~--~vGaGTV~~~~~~~~a~~----aGa~-- 89 (213)
T d1wbha1 20 VIVVKKLEHAVPMAKALVAGGVRVLNVTLRT--ECAVDAIRAIAKEVPEA--IVGAGTVLNPQQLAEVTE----AGAQ-- 89 (213)
T ss_dssp EECCSSGGGHHHHHHHHHHTTCCEEEEESCS--TTHHHHHHHHHHHCTTS--EEEEESCCSHHHHHHHHH----HTCS--
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCC--eeeccccccHHHHHHHHH----CCCc--
Confidence 3445788999999999999999999999854 34577888889988885 466788889988755544 3442
Q ss_pred eEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCccEEEecCCc-ch-HHHHHHHHHHHHHcCCe
Q 013681 279 LFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLASVVNIKLAK-FG-VLGTLQIIKATRKSGLH 356 (438)
Q Consensus 279 ~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~d~i~lk~~~-~G-i~~~~~~~~~A~~~gi~ 356 (438)
|+=-|.-. .++.+.|. +.++|..-| +.|+.++..+++.+ ++++-+=|.. .| ..-.+.+.... -+++
T Consensus 90 FivSP~~~---~~v~~~a~----~~~i~~iPG--v~TpsEi~~A~~~G-~~~vKlFPA~~~Gg~~~lkal~~p~--p~~~ 157 (213)
T d1wbha1 90 FAISPGLT---EPLLKAAT----EGTIPLIPG--ISTVSELMLGMDYG-LKEFKFFPAEANGGVKALQAIAGPF--SQVR 157 (213)
T ss_dssp CEEESSCC---HHHHHHHH----HSSSCEEEE--ESSHHHHHHHHHTT-CCEEEETTTTTTTHHHHHHHHHTTC--TTCE
T ss_pred EEECCCCC---HHHHHHHH----hcCCCccCC--cCCHHHHHHHHHCC-CCEEEeccchhcChHHHHHHhcCcc--cCCc
Confidence 66667643 33444443 467888776 56899999999875 8899888874 46 44444333332 4789
Q ss_pred EEEccCC
Q 013681 357 LMIDGMI 363 (438)
Q Consensus 357 ~~~~s~~ 363 (438)
+++++-.
T Consensus 158 ~~ptGGV 164 (213)
T d1wbha1 158 FCPTGGI 164 (213)
T ss_dssp EEEBSSC
T ss_pred eeeeCCC
Confidence 9987754
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=86.02 E-value=3.8 Score=38.06 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCCcEEEEecCC---------------------Cch----HHHHHHHHHHh-hCCCcEEEEeCC-------
Q 013681 209 SELASKYCKLGFSTLKLNVGR---------------------NIT----ADFDVLQAIHA-VHPHCSFILDAN------- 255 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~---------------------d~~----~di~~l~aiR~-~~~~~~L~vDAN------- 255 (438)
.+.|+..++.||..|-|+.+. +++ --++.+++||+ ++++..+..-.+
T Consensus 162 ~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~~ 241 (380)
T d1q45a_ 162 CLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDA 241 (380)
T ss_dssp HHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGC
T ss_pred HHHHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeeccccccc
Confidence 455777889999999999852 122 23677899998 577654433222
Q ss_pred -CCCCHHHHHHHHH------HhhhCCCCCceEecCCCCC----------ChhhHHHHHHhhccccCCeEEEcCCCCCHHH
Q 013681 256 -EGYTSEEAVEVLG------KLNDMGVIPVLFEQPVHRD----------DWSGLHDVSNFARDTYGISVVADESCRSLND 318 (438)
Q Consensus 256 -~~~s~~~A~~~l~------~L~~~~l~~~~iEqPl~~~----------d~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d 318 (438)
..+..+..+...+ .+...++....+++|-... -......+.+.+|+.+++||..-=.+ +++.
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~~~ 320 (380)
T d1q45a_ 242 TDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-NKEL 320 (380)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC---------------CHHHHHHHHHHHHSCSCEEEESSC-CHHH
T ss_pred ccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccccCchhhhHHHHHHHhhccCCcEEeCCCC-CHHH
Confidence 2233333333333 3333333212455543211 11223344444455678888765554 6888
Q ss_pred HHHHHHcCCccEEEe
Q 013681 319 VQKVMQENLASVVNI 333 (438)
Q Consensus 319 ~~~ll~~~a~d~i~l 333 (438)
..++|+.+.+|.|.+
T Consensus 321 ae~~l~~G~~DlV~~ 335 (380)
T d1q45a_ 321 GMQAVQQGDADLVSY 335 (380)
T ss_dssp HHHHHHTTSCSEEEE
T ss_pred HHHHHHcCCccchhh
Confidence 899999999998654
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=82.54 E-value=8.1 Score=35.52 Aligned_cols=120 Identities=13% Similarity=0.222 Sum_probs=74.3
Q ss_pred HHHHHHHhhcCCcEEEEecCCC---------------------ch----HHHHHHHHHHh-hCCC-cEEEEeC-----CC
Q 013681 209 SELASKYCKLGFSTLKLNVGRN---------------------IT----ADFDVLQAIHA-VHPH-CSFILDA-----NE 256 (438)
Q Consensus 209 ~~~~~~~~~~Gf~~iKlKvG~d---------------------~~----~di~~l~aiR~-~~~~-~~L~vDA-----N~ 256 (438)
.+.|+..++.||..+-|+.+.+ ++ -=++.+++||+ ++++ +-+++-. .+
T Consensus 161 ~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~ 240 (364)
T d1icpa_ 161 RVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEA 240 (364)
T ss_dssp HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTC
T ss_pred HHHHHHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEecccccccCC
Confidence 4557778899999999998621 11 13678899998 4654 3444422 24
Q ss_pred CCCHHHH--HHHHHHhhhCCCCCceEecCCCCCC------hhhHHHHHHhhccccCCeEEEcCCCCCHHHHHHHHHcCCc
Q 013681 257 GYTSEEA--VEVLGKLNDMGVIPVLFEQPVHRDD------WSGLHDVSNFARDTYGISVVADESCRSLNDVQKVMQENLA 328 (438)
Q Consensus 257 ~~s~~~A--~~~l~~L~~~~l~~~~iEqPl~~~d------~~~~a~L~~~~r~~~~iPIa~dEsl~~~~d~~~ll~~~a~ 328 (438)
+++.+++ +..++.++.+++....+.+|..... .+....+++ ..+.|++..-. ++.++..+++..+.+
T Consensus 241 g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~vi~~g~-~~~~~ae~~l~~g~a 315 (364)
T d1icpa_ 241 GDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRK----AYKGTFIVAGG-YDREDGNRALIEDRA 315 (364)
T ss_dssp CCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHH----HCCSCEEEESS-CCHHHHHHHHHTTSC
T ss_pred cCcchHHHHHHHHHHhhccceeeeeeecCcccccccccccHHHHHHHHH----hcCCCEEEECC-CCHHHHHHHHHcCCC
Confidence 4555544 5667777777764224455543221 223334443 46667655544 578888999999999
Q ss_pred cEEEe
Q 013681 329 SVVNI 333 (438)
Q Consensus 329 d~i~l 333 (438)
|+|-+
T Consensus 316 D~V~~ 320 (364)
T d1icpa_ 316 DLVAY 320 (364)
T ss_dssp SEEEE
T ss_pred ceehh
Confidence 98764
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=81.88 E-value=8 Score=34.50 Aligned_cols=138 Identities=14% Similarity=0.065 Sum_probs=87.3
Q ss_pred ceeeeeee--CCC-CHHHHHHHHHHHhhcCCcEEEEec-------CC-------CchHHHHHHHHHHhh--CCCcEE--E
Q 013681 193 SLSTAITI--PAV-SPAEASELASKYCKLGFSTLKLNV-------GR-------NITADFDVLQAIHAV--HPHCSF--I 251 (438)
Q Consensus 193 ~ip~~~~i--~~~-~~~~~~~~~~~~~~~Gf~~iKlKv-------G~-------d~~~di~~l~aiR~~--~~~~~L--~ 251 (438)
.+|+..-. +.+ ++..+.+-++++.+.|...+-|-= |. +.++-++++++..+. .|++-| |
T Consensus 77 ~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiAR 156 (289)
T d1muma_ 77 SLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMAR 156 (289)
T ss_dssp CSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEE
T ss_pred CCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheec
Confidence 45544432 223 577888889999999998887743 21 345666777777663 466544 7
Q ss_pred EeCCCCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEEcCCCCCH-HHHHHHHHcCCccE
Q 013681 252 LDANEGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVADESCRSL-NDVQKVMQENLASV 330 (438)
Q Consensus 252 vDAN~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~dEsl~~~-~d~~~ll~~~a~d~ 330 (438)
-|+......++|++.+++..+.|....|+|-+- +.+.++++++.+ ..++++...+.-.++ .++.++.+. .+..
T Consensus 157 TDa~~~~g~~eAi~R~~aY~eAGAD~vf~~~~~---~~~~~~~~~~~~--~~Pl~~~~~~~~~~p~~s~~eL~~~-Gv~~ 230 (289)
T d1muma_ 157 TDALAVEGLDAAIERAQAYVEAGAEMLFPEAIT---ELAMYRQFADAV--QVPILANITEFGATPLFTTDELRSA-HVAM 230 (289)
T ss_dssp ECCHHHHCHHHHHHHHHHHHHTTCSEEEETTCC---CHHHHHHHHHHH--CSCBEEECCSSSSSCCCCHHHHHHT-TCSE
T ss_pred cccccccCHHHHHHHHHHhhhcCCcEEEecCCC---CHHHHHHHHHhc--CCCEEEeecCcCCCccchHHHHHHh-ccce
Confidence 899877789999999999999886644555442 577888888743 234444444422111 133444444 4666
Q ss_pred EEecCC
Q 013681 331 VNIKLA 336 (438)
Q Consensus 331 i~lk~~ 336 (438)
+..-..
T Consensus 231 v~~~~~ 236 (289)
T d1muma_ 231 ALYPLS 236 (289)
T ss_dssp EEESSH
T ss_pred EEechH
Confidence 666543
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=81.57 E-value=16 Score=31.99 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=73.5
Q ss_pred ceeeeeee--CCCCHHHHHHHHHHHhhcCCcEEEEecCC----------------CchHHHHHHHHHHhh--CCCcE--E
Q 013681 193 SLSTAITI--PAVSPAEASELASKYCKLGFSTLKLNVGR----------------NITADFDVLQAIHAV--HPHCS--F 250 (438)
Q Consensus 193 ~ip~~~~i--~~~~~~~~~~~~~~~~~~Gf~~iKlKvG~----------------d~~~di~~l~aiR~~--~~~~~--L 250 (438)
.+|+..-+ +.+++..+.+-++++.+.|...+-|-=.. +.++-..++++.++. .+++. -
T Consensus 76 ~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~A 155 (275)
T d1s2wa_ 76 DVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVA 155 (275)
T ss_dssp SSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEE
T ss_pred CCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEe
Confidence 46654432 44688888888999999999988775321 223334556665552 46644 4
Q ss_pred EEeCC-CCCCHHHHHHHHHHhhhCCCCCceEecCCCCCChhhHHHHHHhhccccCCeEEE
Q 013681 251 ILDAN-EGYTSEEAVEVLGKLNDMGVIPVLFEQPVHRDDWSGLHDVSNFARDTYGISVVA 309 (438)
Q Consensus 251 ~vDAN-~~~s~~~A~~~l~~L~~~~l~~~~iEqPl~~~d~~~~a~L~~~~r~~~~iPIa~ 309 (438)
|-|+- .....++|++.+++..+.|-...|+|-+-..++ ....++.. ...++|+..
T Consensus 156 RtDa~~~~~gl~eai~R~~aY~eAGAD~vf~~~~~~~~~--~~~~~~~~--~~~~~pl~~ 211 (275)
T d1s2wa_ 156 RVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKKADPS--DIEAFMKA--WNNQGPVVI 211 (275)
T ss_dssp EECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCSSSSH--HHHHHHHH--HTTCSCEEE
T ss_pred cchhhhhcCCHHHHHHHHHHHHhcCCCeeeeccccCcHH--HHHHHHHh--hcCCCCEEE
Confidence 78884 557899999999999988876668887765433 33333332 135666655
|