Citrus Sinensis ID: 013685

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKKKNGNVLKKIGVLWKKPQK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccccccccccccccccccccHHHHcccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEadtsnanrnlsqncsgdydlgQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKEtelqgiseenegLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKreldtpnmnsNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLstgnngkcmersgsidsnynpitgkiplpysddidddllkkkngnVLKKIGVLWKKPQK
Flexible Loop (DISEMBL)
mvaeseaaqtknaesahLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAEtklnegqiqsTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETelqniseeneMLKLEISKreldtpnmNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAasmlstgnngkcmersgSIDSNYNPITGKIPLPYSDDIDDDLLKKKngnvlkkigvlwkkpqk
Low Complexity Region (SEG)
MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMeskhleeelsslkseVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSddidddllkkkngnvlkkigvLWKKPQK
Disordered region (IsUnstruct)
******************************************************************LSVEAL******AIEAY*************INLLEGL*********************************************************************************************************************************************************************************************************************************************************************************************************ITGKIPLPYSDDIDDDLLKKKNGNVLKKIGVLW*****
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VLWKK***
Disordered Region (DISEMBL)
***************AHLELQSLKGNLIETISLMENMKN************QALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKKKNGNVLKKIGVLWKKPQK
Disordered Region (DISPRO)
***********NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLST********************************DDDL********LKKI*VLWKK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAESEAAQTKNAESAHLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGMKAIEAYSSIASExxxxxxxxxxxxxxxxxxxxxTSNANRNLSQNCSGDYDLGQKIKENQDTMExxxxxxxxxxxxxxxxxxxxxxxxxxxxLNEGQIQSTVKIKSAFEQLEQIKHQSGLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNEGLHMQLDKNLMCQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTPNMNSNLAAEVEAARSAEKEALMKLGLLxxxxxxxxxxxxxxxxxxxxxxxxNCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKKKNGNVLKKIGVLWKKPQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	438	2.2.26 [Sep-21-2011]
Q9LSS5	564	Interactor of constitutiv	yes	no	0.865	0.671	0.478	8e-96
Q9ZQC5	583	Interactor of constitutiv	no	no	0.863	0.648	0.409	3e-65
Q8VYU8	396	Interactor of constitutiv	no	no	0.502	0.555	0.282	4e-18
Q8LE98	344	Interactor of constitutiv	no	no	0.630	0.802	0.301	1e-14
Q9M9F9	324	Interactor of constitutiv	no	no	0.356	0.481	0.387	7e-14

>sp|Q9LSS5|ICR3_ARATH Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1

 Score =  351 bits (900), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 211/441 (47%), Positives = 293/441 (66%), Gaps = 62/441 (14%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           MVA SEA   K AE  + E+Q L+GNL++T+  +EN +NQL++ + SE + +ALA ETL 
Sbjct: 183 MVASSEAGHVKQAELYNSEVQLLRGNLMDTLFHVENFRNQLKDCEISEAETEALATETLR 242

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
           QLE AK +VE L+++G KA+E+Y  +A ELE+S++R+  LE LV+KL            Q
Sbjct: 243 QLENAKKAVEELKSDGTKAVESYKKMAVELEQSKSRMVWLEALVNKL------------Q 290

Query: 121 NCSGDYDLGQKIKENQDTM---ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST 177
           N   D +  + + ++ +++   ES  ++EE+SSL+ EV +LR+ALE ++ K  EG ++++
Sbjct: 291 NNPADLENHEILLKDYESLRRGESNEMDEEVSSLRCEVERLRAALEASDKKDQEGNVEAS 350

Query: 178 VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH 237
            +++                + EL++EL+ AKS+I+ELKA LMDKETELQ ISEE +   
Sbjct: 351 SRLRI---------------QAELQSELKIAKSEIDELKARLMDKETELQFISEERDNFS 395

Query: 238 MQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD 297
           M+L KN   Q+E  +  +L+KL +A+E+LKA+LMDKETELQ +S+ENE LK +I K E D
Sbjct: 396 MKLMKN---QKEIDVEAELKKLREAIENLKADLMDKETELQIVSDENETLKSDIHKSETD 452

Query: 298 TPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAE 357
                              ++A +KLG+ MEEADKS+++A R+ EQLEA Q++N E E E
Sbjct: 453 V------------------QDAFLKLGIAMEEADKSSKKAVRVTEQLEATQASNSEMETE 494

Query: 358 LRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDL 417
           LR+LKVQS+QWRKAAEAA +MLS GNNGK  E       NYN        PYS+DIDD+L
Sbjct: 495 LRKLKVQSNQWRKAAEAATAMLSAGNNGKFAE-------NYNQTNS----PYSEDIDDEL 543

Query: 418 LKKKNGNVLKKIGVLWKKPQK 438
            KKKNGNVLKKIGVLWKKPQK
Sbjct: 544 TKKKNGNVLKKIGVLWKKPQK 564

Acts as a scaffold, mediating interaction of ROPs with different proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQC5|ICR2_ARATH Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1

 Score =  249 bits (635), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 182/444 (40%), Positives = 265/444 (59%), Gaps = 66/444 (14%)

Query: 20  LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKA 79
           +++L+  L ET+SL+E ++ +L ++KE E QA  +   T  QLE A L++E LR++GMK 
Sbjct: 181 VENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKM 240

Query: 80  IEAYSSIASELERSRTRINLLEGLVSKLEA-DTSNANRNLSQNCSGDYDLGQKIKENQDT 138
            EA +S+ +ELE+S++ +  LE LV +LE  D +  N                   N D+
Sbjct: 241 SEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGN------------------ANGDS 282

Query: 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLRE 198
              + L+EE++  + E+ QL+SA+E+ E + +E  IQST++I++A+EQ++++K     RE
Sbjct: 283 SSVEELKEEINVARQEISQLKSAVEVTERRYHEEYIQSTLQIRTAYEQVDEVKSGYAQRE 342

Query: 199 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK---------NLMCQRE 249
            EL  EL+K K++ + L   LMDKE +L+ + +ENE L+ ++ +         N + Q E
Sbjct: 343 AELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNE 402

Query: 250 SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEV 309
            +   +L+KL   V +L+ANLMDKE ELQ++     M + E  + E++T     N A + 
Sbjct: 403 PEDTGELKKLESDVMELRANLMDKEMELQSV-----MSQYESLRSEMETMQSEKNKAID- 456

Query: 310 EAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWR 369
                   EAL KLG L EEADKS +RA    EQL AAQ  N E EAELRRLKVQ DQWR
Sbjct: 457 --------EALAKLGSLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQCDQWR 508

Query: 370 KAAEAAASML-----STGNNGKCMERSGSIDSNYNPITGKIPL--------PYSDDIDDD 416
           KAAEAAA+ML     +  +NGK +ER+GS++S         PL        PY  + DD+
Sbjct: 509 KAAEAAATMLSGGNNNNNSNGKYVERTGSLES---------PLRRRNVNMSPYMGETDDE 559

Query: 417 L--LKKKNGNVLKKIGVLWKKPQK 438
           L   KKKNG++LKKIGVL KK QK
Sbjct: 560 LSSPKKKNGSMLKKIGVLLKKSQK 583

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYU8|ICR5_ARATH Interactor of constitutive active ROPs 5 OS=Arabidopsis thaliana GN=ICR5 PE=2 SV=2

 Score = 92.8 bits (229), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 151/351 (43%), Gaps = 131/351 (37%)

Query: 88  SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE 147
           SELE+S+  +  LE LV +LE +  N+                  +++  +ME + L+E 
Sbjct: 177 SELEQSKYEVRSLEKLVRQLEEERVNS------------------RDSSSSMEVEELKEA 218

Query: 148 LSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQK 207
           ++  + E+ QL+SA+E AET+  E  IQST++I+SA+EQ E +K +   RE EL  EL +
Sbjct: 219 MNLSRQEITQLKSAVEAAETRYQEEYIQSTLQIRSAYEQTEAVKSRYSQREAELTEELNR 278

Query: 208 AKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLK 267
            K +IE L+  LM+K                         +E +   DL+KL   + +++
Sbjct: 279 TKDEIEGLRKELMEK------------------------VKEDESTGDLKKLESDLMEVR 314

Query: 268 ANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLM 327
            +LMDKE ELQ                      + S +  +VE A +   EA +K     
Sbjct: 315 GSLMDKEMELQ---------------------ILRSAMEKKVETANTEAMEAELK----- 348

Query: 328 EEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKC 387
                                           R+K+Q +QWRKAAE AAS+L   NN + 
Sbjct: 349 --------------------------------RVKIQCEQWRKAAETAASIL---NNDE- 372

Query: 388 MERSGSIDSNYNPITGKIPLPYSDDIDDDLLKKKNGNVLKKIGVLWKKPQK 438
            ER+ SI+++                           +LKK GVL KK  K
Sbjct: 373 -ERTDSIETS--------------------------KMLKKFGVLLKKNHK 396

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LE98|ICR1_ARATH Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 162/312 (51%), Gaps = 36/312 (11%)

Query: 135 NQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQS 194
           N D +  K L   +S L+S++GQ +  L + + +L   +    VK ++  E  ++ K  +
Sbjct: 54  NSDPLGQKKLGGRISDLESQLGQAQEELRLLKEQLANAE---AVKKQAQDELHKKSKKPN 110

Query: 195 GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNN 254
            L  VE E+  +  + D +E+  ++  KET++           + ++K  + + E +  N
Sbjct: 111 PLARVE-ESATEAERIDRDEIPGDVQ-KETDV---------FEVPVEKIAVEEEELRSGN 159

Query: 255 DLRKLAQAVED----LKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVE 310
           D  +   A ED    LKA L D E E +++ +ENE LK           N  S+ A+E+ 
Sbjct: 160 DEAEKLVAKEDEIKMLKARLYDMEKEHESLGKENESLK-----------NQLSDSASEIS 208

Query: 311 AARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRK 370
             ++ E E + K+  + EE ++S  + A + E+LE+ + A    EAE+++L+VQ++QWRK
Sbjct: 209 NVKANEDEMVSKVSRIGEELEESRAKTAHLKEKLESMEEAKDALEAEMKKLRVQTEQWRK 268

Query: 371 AAEAAASMLSTGNNGKCMERSGSIDSNY-----NPITGKI-PLPYSDDIDDDLLK-KKNG 423
           AA+AAA++LS        +RSGS +  Y     +P  G + P   +DD DD L   K+  
Sbjct: 269 AADAAAAVLSGEFEMNGRDRSGSTEKYYAGGFFDPSAGFMDPPGMADDYDDGLGSGKRKS 328

Query: 424 NVLKKIGVLWKK 435
           + +K  G LW+K
Sbjct: 329 SGMKMFGELWRK 340

Acts as a scaffold, mediating interaction of ROPs with different proteins. Required for primary and adventitious root maintenance, but not for their formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9F9|ICR4_ARATH Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=3 SV=2

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/173 (38%), Positives = 102/173 (58%), Gaps = 17/173 (9%)

Query: 266 LKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGL 325
           LKA L D E E  ++SEENE LK ++ K   DT         E+  A++ E E   K+  
Sbjct: 162 LKARLYDLEKERVSLSEENETLKDQLKK--TDT---------EMSCAKAKEDEIASKVSQ 210

Query: 326 LMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTG--N 383
           + EE ++SN   A++ ++LE+ + A    EAE+++LKVQ++QWRKAA+AAA++LS G   
Sbjct: 211 IGEELEESNETTAKLKKKLESVEEAKETLEAEMKKLKVQTEQWRKAADAAAAVLSGGVEM 270

Query: 384 NGKCMERSGSIDSNY-NPITGKIPLPYSDDIDDDLLKKKNGNVLKKIGVLWKK 435
           NG+  E+ GS++ ++     G   +  +DD DD   K+K+    K  G LWKK
Sbjct: 271 NGRFSEQCGSMEKHFAGRFVGSPGM--ADDSDDGSGKRKSSGK-KMFGDLWKK 320

Acts as a scaffold, mediating interaction of ROPs with different proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
255582963	618	ATP binding protein, putative [Ricinus c	0.988	0.700	0.668	1e-151
359478681	624	PREDICTED: interactor of constitutive ac	0.997	0.700	0.642	1e-139
147826788	657	hypothetical protein VITISV_024243 [Viti	0.997	0.665	0.642	1e-138
224140161	609	predicted protein [Populus trichocarpa]	0.965	0.694	0.579	1e-125
449459076	614	PREDICTED: interactor of constitutive ac	0.974	0.695	0.582	1e-123
255568412	627	ATP binding protein, putative [Ricinus c	0.990	0.692	0.577	1e-122
356539100	615	PREDICTED: interactor of constitutive ac	0.972	0.692	0.567	1e-122
449511468	614	PREDICTED: LOW QUALITY PROTEIN: interact	0.974	0.695	0.568	1e-119
356558449	612	PREDICTED: interactor of constitutive ac	0.977	0.699	0.570	1e-118
225439892	621	PREDICTED: interactor of constitutive ac	0.993	0.700	0.573	1e-118

>gi|255582963|ref|XP_002532251.1| ATP binding protein, putative [Ricinus communis] gi|223528039|gb|EEF30117.1| ATP binding protein, putative [Ricinus communis]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 293/438 (66%), Positives = 367/438 (83%), Gaps = 5/438 (1%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           MVAES AAQ K+ ESA +ELQ+L+ NL++T+SL+EN+KNQL+++K+SE QAQALA ETLL
Sbjct: 186 MVAESGAAQNKHTESADVELQTLRANLMDTLSLVENVKNQLQDTKDSEAQAQALASETLL 245

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
           QLETAK SVEALR++G KAIEAY+SIASEL++SR R+ LLEGLV KLEAD  NAN ++  
Sbjct: 246 QLETAKKSVEALRSDGSKAIEAYNSIASELDQSRARVKLLEGLVLKLEADLHNANGSIFL 305

Query: 121 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKI 180
           + +  ++  + I ENQ + E+  LE E+SSLKSEVGQLRS+L+ AETK  E Q  ST +I
Sbjct: 306 DSANVHE--EAIVENQRSQEANQLEAEVSSLKSEVGQLRSSLQAAETKSQEEQNNSTAQI 363

Query: 181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 240
           KSA+E +EQIK +S L+E ELEAEL++ K+DIEELKA+LMDKETELQGISEENE L+M+L
Sbjct: 364 KSAYELVEQIKTESLLKESELEAELKQTKADIEELKADLMDKETELQGISEENEVLNMKL 423

Query: 241 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPN 300
              L C+ ES+L N++RKL + V DLKA+LMDKETELQNI E+NE+LK+EISKRE++  N
Sbjct: 424 KNILSCRGESELENEIRKLKENVADLKASLMDKETELQNILEQNEILKVEISKREMNGTN 483

Query: 301 MNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR 360
               +  E+E AR+AE+EALMKLG +MEEAD+SN++ AR+ EQLEA+Q+AN E EAELRR
Sbjct: 484 ---EMDVELEVARAAEREALMKLGFMMEEADRSNKKVARVTEQLEASQAANSEMEAELRR 540

Query: 361 LKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKK 420
           LKVQSDQWRKAAEAAA+MLS GNNG+ MER+GS+DS+YNP TG+I  PY++D+DDDLLKK
Sbjct: 541 LKVQSDQWRKAAEAAAAMLSAGNNGRFMERTGSLDSSYNPATGRIGSPYNEDMDDDLLKK 600

Query: 421 KNGNVLKKIGVLWKKPQK 438
           KNGN+LKKIGVLWKKPQK
Sbjct: 601 KNGNMLKKIGVLWKKPQK 618

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478681|ref|XP_002282027.2| PREDICTED: interactor of constitutive active ROPs 3-like [Vitis vinifera]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 282/439 (64%), Positives = 348/439 (79%), Gaps = 2/439 (0%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           M  ES+ AQTK+ ESA  EL SLK NL ET+SL+ENMKNQL++SKESE QAQALA ETLL
Sbjct: 187 MKVESQVAQTKHTESADSELHSLKENLAETLSLVENMKNQLKDSKESEAQAQALASETLL 246

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
           QLETAK ++EALR +G+KA E Y+SI+ EL  SR R+N LEGLVSKL+ D + A R+ S 
Sbjct: 247 QLETAKSTIEALRTDGIKAAETYNSISLELNESRARVNFLEGLVSKLKTDLTEA-RSSSP 305

Query: 121 NCSGDYDLG-QKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVK 179
           N +G+ +L  Q+  E+++  ES  L+ EL+SLK EVGQL+SAL+ AE + +E  +QSTV+
Sbjct: 306 NYAGNDNLDEQQASEHEEIEESNQLKAELASLKIEVGQLKSALDAAEIRYHEEHVQSTVQ 365

Query: 180 IKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQ 239
           I+SA+E +E +K  S  R+ EL+ EL+K K+DIEELKANLMDKETELQGISEENEGL M+
Sbjct: 366 IRSAYEHVEHVKSASSSRQAELQVELEKTKADIEELKANLMDKETELQGISEENEGLMMK 425

Query: 240 LDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTP 299
           L  NL CQRE +L  +L+K  + V  LK NLMDKETE Q + +ENE LKLE+ KRE+D  
Sbjct: 426 LQSNLSCQREYELERELKKSKEDVAKLKENLMDKETEFQYVVDENETLKLEMKKREMDKG 485

Query: 300 NMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELR 359
                +A+E+EAAR+AE+EAL+KLG +MEEADKS+RRAAR+AEQLEA Q AN E EAELR
Sbjct: 486 KFGDGIASEIEAARAAEQEALLKLGYVMEEADKSSRRAARVAEQLEATQVANSEMEAELR 545

Query: 360 RLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLK 419
           +LKVQSDQWRKAAEAAA+MLS G+NGK  E++GS+DSNYN ITGKI  PYS+D+DD+  K
Sbjct: 546 KLKVQSDQWRKAAEAAAAMLSAGSNGKLTEKTGSLDSNYNHITGKITSPYSEDLDDESPK 605

Query: 420 KKNGNVLKKIGVLWKKPQK 438
           KKNGNVLKKIGVLWKKP K
Sbjct: 606 KKNGNVLKKIGVLWKKPHK 624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826788|emb|CAN75085.1| hypothetical protein VITISV_024243 [Vitis vinifera]

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 282/439 (64%), Positives = 348/439 (79%), Gaps = 2/439 (0%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           M  ES+ AQTK+ ESA  EL SLK NL ET+SL+ENMKNQL++SKESE QAQALA ETLL
Sbjct: 220 MKVESQVAQTKHTESADSELHSLKENLAETLSLVENMKNQLKDSKESEAQAQALASETLL 279

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
           QLETAK ++EALR +G+KA E Y+SI+ EL  SR R+N LEGLVSKL+ D + A R+ S 
Sbjct: 280 QLETAKSTIEALRTDGIKAAETYNSISLELNESRARVNFLEGLVSKLKTDLTEA-RSSSP 338

Query: 121 NCSGDYDLG-QKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVK 179
           N +G+ +L  Q+  E+++  ES  L+ EL+SLK EVGQL+SAL+ AE + +E  +QSTV+
Sbjct: 339 NYAGNDNLDEQQASEHEEIEESNQLKAELASLKIEVGQLKSALDAAEIRYHEEHVQSTVQ 398

Query: 180 IKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQ 239
           I+SA+E +E +K  S  R+ EL+ EL+K K+DIEELKANLMDKETELQGISEENEGL M+
Sbjct: 399 IRSAYEHVEHVKSASSSRQAELQVELEKTKADIEELKANLMDKETELQGISEENEGLMMK 458

Query: 240 LDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTP 299
           L  NL CQRE +L  +L+K  + V  LK NLMDKETE Q + +ENE LKLE+ KRE+D  
Sbjct: 459 LQSNLSCQREYELERELKKSKEDVAKLKENLMDKETEFQYVVDENETLKLEMKKREMDKG 518

Query: 300 NMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELR 359
                +A+E+EAAR+AE+EAL+KLG +MEEADKS+RRAAR+AEQLEA Q AN E EAELR
Sbjct: 519 KFGDGIASEIEAARAAEQEALLKLGYVMEEADKSSRRAARVAEQLEATQVANSEMEAELR 578

Query: 360 RLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLK 419
           +LKVQSDQWRKAAEAAA+MLS G+NGK  E++GS+DSNYN ITGKI  PYS+D+DD+  K
Sbjct: 579 KLKVQSDQWRKAAEAAAAMLSAGSNGKLTEKTGSLDSNYNHITGKITSPYSEDLDDESPK 638

Query: 420 KKNGNVLKKIGVLWKKPQK 438
           KKNGNVLKKIGVLWKKP K
Sbjct: 639 KKNGNVLKKIGVLWKKPHK 657

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140161|ref|XP_002323453.1| predicted protein [Populus trichocarpa] gi|222868083|gb|EEF05214.1| predicted protein [Populus trichocarpa]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/438 (57%), Positives = 331/438 (75%), Gaps = 15/438 (3%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           MV ESEA+QTK+AESA+ ELQ L+  L ET+SL+E MK +L +++ESE QA  L  +T  
Sbjct: 187 MVVESEASQTKHAESAYAELQGLRLELTETLSLVEKMKTELSDTRESEAQALELVSKTQK 246

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
           QLE A  + E L+A+ +KA+EAY S++ ELE+SR ++  LE LVSKL+AD +N       
Sbjct: 247 QLEEANATAEMLQADDVKAMEAYRSLSLELEQSRAQVKPLEELVSKLQADPANICGKTVM 306

Query: 121 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKI 180
           N +GD ++               L E+++ LK EVGQL+SALE +ET+  E  IQST++I
Sbjct: 307 NPTGDVEV---------------LHEKMNLLKHEVGQLKSALEASETRYQEEYIQSTLQI 351

Query: 181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 240
           +SA+EQ+E+ K +SG RE ELEAEL+KAK++IEEL+ANLMDKETELQGISEENEGL +++
Sbjct: 352 RSAYEQVERTKLESGHREAELEAELKKAKNNIEELRANLMDKETELQGISEENEGLALKI 411

Query: 241 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPN 300
           +KN   +RES+L  +L+KL   + +LKA+L+DKE  LQ+++EENE L  EI K E++   
Sbjct: 412 EKNQPSERESELAMELKKLEHDLAELKASLLDKEARLQSVAEENETLWKEIKKGEMEKSK 471

Query: 301 MNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR 360
           +N    A  E AR+AE EALMKLG L EEADKS+RR AR+ EQL+AAQ+AN E EAELRR
Sbjct: 472 VNDEAVALAETARAAEHEALMKLGYLTEEADKSSRRVARVTEQLDAAQAANTEMEAELRR 531

Query: 361 LKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKK 420
           LKVQSDQWRKAAEAAA+MLSTGNNGK +ER+GS+D+NYNPI G +  P+S+D+DDD  KK
Sbjct: 532 LKVQSDQWRKAAEAAAAMLSTGNNGKFVERTGSLDNNYNPIPGNMGSPFSEDMDDDSPKK 591

Query: 421 KNGNVLKKIGVLWKKPQK 438
           KNGN+LKKIGVLWK+ QK
Sbjct: 592 KNGNMLKKIGVLWKRGQK 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459076|ref|XP_004147272.1| PREDICTED: interactor of constitutive active ROPs 3-like [Cucumis sativus]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/438 (58%), Positives = 332/438 (75%), Gaps = 11/438 (2%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           MVA+SE  +T++A+SA+ EL S +  L ET+ LME M+++L+  +ESE QAQ LARETL 
Sbjct: 188 MVAQSETKKTEHADSANKELDSFRSKLAETLCLMERMEHELKNCRESEAQAQLLARETLA 247

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
           QLE AK  +E LR +GM+A +AY++IA EL+ S+ R+N+LE LV KLE D +NA+ NL Q
Sbjct: 248 QLEDAKKRLEELRFDGMEAKKAYNAIALELDESKARVNILEKLVGKLETDVANASSNLLQ 307

Query: 121 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKI 180
           + +          EN+      H+EE L SL+SE+ QL++ALE+AE K +E QIQS V+I
Sbjct: 308 HPAV---------ENEKKRGEDHIEE-LCSLRSEIEQLKTALEVAEAKYHEDQIQSAVQI 357

Query: 181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 240
           K A+EQ+EQIK     RE  LE EL+K K+DIEELKA+LMDKETELQGISEENE L  ++
Sbjct: 358 KMAYEQVEQIKSNKNSREFNLEQELKKFKADIEELKADLMDKETELQGISEENEQLQAKI 417

Query: 241 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPN 300
            KNL  QRE +L  ++++L + + +LK++L DKE +  +IS+ENEMLKLEI+KR +    
Sbjct: 418 QKNLSSQREYELEREIKELKEHLVELKSSLTDKERDYHSISDENEMLKLEINKRIMIRAK 477

Query: 301 MNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR 360
             SN   EVE A +AE++AL++LG++MEEADKSN+RAAR++EQLEAAQ+AN E E ELRR
Sbjct: 478 A-SNGTTEVEDATAAEQDALIRLGIVMEEADKSNKRAARVSEQLEAAQAANAEIETELRR 536

Query: 361 LKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKK 420
           L+VQSDQWRKAAEAAA+MLS GNNGK M+RSGS+DS+Y+   GK    Y ++IDDDLLKK
Sbjct: 537 LRVQSDQWRKAAEAAAAMLSAGNNGKLMDRSGSLDSSYDSAAGKFNGSYCEEIDDDLLKK 596

Query: 421 KNGNVLKKIGVLWKKPQK 438
           KNGNVLKKIGVLWKK QK
Sbjct: 597 KNGNVLKKIGVLWKKQQK 614

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568412|ref|XP_002525180.1| ATP binding protein, putative [Ricinus communis] gi|223535477|gb|EEF37146.1| ATP binding protein, putative [Ricinus communis]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 253/438 (57%), Positives = 335/438 (76%), Gaps = 4/438 (0%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           MV +SE  QTK+AESAH +LQ L+  L ET+SL+E +KN+L + +ESE QA  L  +T  
Sbjct: 194 MVMQSENTQTKHAESAHADLQGLRMELTETLSLVEKLKNELSDCRESEAQALELVSKTEK 253

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
           QLE AK + E  R+EG KA+EAY+S++ ELE+S+T++  LE L+SKL+AD +N +  L  
Sbjct: 254 QLEIAKATAEMHRSEGSKAMEAYNSLSLELEQSKTQVKSLEELISKLKADLANTDGKLV- 312

Query: 121 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKI 180
           N + D    Q+ +EN  T     L  EL+SLK E+GQLRSALE +E +  E  IQST++I
Sbjct: 313 NSTVDTGPPQESEENDGT---NQLISELNSLKFELGQLRSALEASEARYQEEYIQSTLQI 369

Query: 181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 240
           +SA+EQ+EQ+K +S  RE ELEAEL+ AKS+IEEL+A LMDKETELQ ISEENEGL+++ 
Sbjct: 370 RSAYEQVEQVKLESRKRETELEAELKNAKSNIEELRAKLMDKETELQNISEENEGLNLKF 429

Query: 241 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPN 300
           +KN   +RES+L  +L+KL   + DLKA+L+DKE ELQN++EENE+LK+EI K E++   
Sbjct: 430 EKNQPSERESELAIELKKLEHELADLKASLLDKEAELQNVTEENEILKMEIKKGEMERSE 489

Query: 301 MNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR 360
           +N    +  E A++AE+EALMKLG L EE DK++R+AAR  EQL+AAQ+AN E EAELRR
Sbjct: 490 INDEAVSLAETAKAAEREALMKLGHLTEEVDKNSRKAARATEQLDAAQAANTEMEAELRR 549

Query: 361 LKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKK 420
           LKVQSDQWRKAAEAAA+MLS+GNNGK +ER+GS++++YN I G +  PYS+D++DD  KK
Sbjct: 550 LKVQSDQWRKAAEAAAAMLSSGNNGKFVERTGSLENSYNTIAGAMGSPYSEDMEDDSPKK 609

Query: 421 KNGNVLKKIGVLWKKPQK 438
           KNGN+LKKIGVLWKK QK
Sbjct: 610 KNGNMLKKIGVLWKKGQK 627

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539100|ref|XP_003538038.1| PREDICTED: interactor of constitutive active ROPs 3-like [Glycine max]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/442 (56%), Positives = 333/442 (75%), Gaps = 16/442 (3%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           +VA  E+ Q+++AESA +EL +LK NL ET+SL++ +KNQLR+ KESE QAQAL  ET++
Sbjct: 186 LVANCESVQSQHAESADIELLNLKQNLSETLSLVDALKNQLRDCKESEAQAQALVNETMM 245

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
           QLE AK +VE LRA+  KA++ Y+SIA EL++S  R+N LE LVS LE D  N    LS+
Sbjct: 246 QLEAAKGTVEFLRADVAKAVDGYNSIAKELDQSEARVNSLEALVSNLETDPINNKCILSE 305

Query: 121 NCSGDYDL---GQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST 177
           N + D+      + +K+ +D      LE E+ SLKSEV +LRSA+E AE K  E Q +ST
Sbjct: 306 NVADDHKFEYQPEILKQGEDP---SQLEAEVVSLKSEVERLRSAIETAEIKYQEEQNRST 362

Query: 178 VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH 237
           V+I++A+E ++QIK +S  RE ELEAEL+K K+DIEELKANLMDKETELQGI EEN+ L+
Sbjct: 363 VQIRNAYELVDQIKSESCQRECELEAELKKKKADIEELKANLMDKETELQGIVEENDNLN 422

Query: 238 MQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD 297
           ++L +++  + E +L  ++++L + V +LKA++MDKET LQ+ISEENE LK E++    +
Sbjct: 423 LKLQESMSSKNEHELKREIKRLEECVAELKADMMDKETMLQSISEENETLKSEMN----N 478

Query: 298 TPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAE 357
                  +AAEVE  R+AE+EALMKLG++MEEADKSN++AAR+AEQLEA Q+AN E EAE
Sbjct: 479 CSKAREEVAAEVEQVRAAEREALMKLGIVMEEADKSNKKAARVAEQLEATQAANSEMEAE 538

Query: 358 LRRLKVQSDQWRKAAEAAASMLSTG-NNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDD 416
           LRRLKVQSDQWRKAAEAAA M+STG NNG+  ER+ S+D+N     G    PY++D+DDD
Sbjct: 539 LRRLKVQSDQWRKAAEAAAVMISTGNNNGRLTERTVSLDNNN--YKGS---PYAEDMDDD 593

Query: 417 LLKKKNGNVLKKIGVLWKKPQK 438
             +KKNGN+LKKIGVLWKKPQK
Sbjct: 594 FQRKKNGNMLKKIGVLWKKPQK 615

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511468|ref|XP_004163963.1| PREDICTED: LOW QUALITY PROTEIN: interactor of constitutive active ROPs 3-like [Cucumis sativus]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/438 (56%), Positives = 327/438 (74%), Gaps = 11/438 (2%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           MVA+SE  +T++A+SA+ EL S +  L ET+ LME M+++L+  +ESE QAQ LARETL 
Sbjct: 188 MVAQSETKKTEHADSANKELDSFRSKLAETLCLMERMEHELKNCRESEAQAQLLARETLA 247

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
           QLE AK  +E LR +GM+A +AY++IA EL+ S+ R+N+LE LV KLE D +NA+ NL Q
Sbjct: 248 QLEDAKKRLEELRFDGMEAKKAYNAIALELDESKARVNILEKLVGKLETDVANASSNLLQ 307

Query: 121 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKI 180
           + +          EN+      H+EE L SL+SE+ QL++ALE+AE K +E QIQS V+I
Sbjct: 308 HPAV---------ENEKKRGEDHIEE-LCSLRSEIEQLKTALEVAEAKYHEDQIQSAVQI 357

Query: 181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 240
           K A+EQ+EQIK     RE  LE EL+K K+DIEELKA+LMDKETELQGISEENE L  ++
Sbjct: 358 KMAYEQVEQIKSNKNSREFNLEQELKKFKADIEELKADLMDKETELQGISEENEQLQAKI 417

Query: 241 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPN 300
            KNL  QRE +L  ++++L + + +LK++L DKE +  +IS+ENEMLKLEI+KR +    
Sbjct: 418 QKNLSSQREYELEREIKELKEHLVELKSSLTDKERDYHSISDENEMLKLEINKRIMIRAK 477

Query: 301 MNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR 360
             SN   EVE A +AE++AL++LG++MEEADKSN+RAAR++EQLEAAQ+AN E E ELRR
Sbjct: 478 A-SNGTTEVEDATAAEQDALIRLGIVMEEADKSNKRAARVSEQLEAAQAANAEIETELRR 536

Query: 361 LKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKK 420
           L+VQSDQWRKAAEAAA+MLS GNNGK M+RSGS+DS+Y+   GK    Y ++IDDDLLK+
Sbjct: 537 LRVQSDQWRKAAEAAAAMLSAGNNGKLMDRSGSLDSSYDSAAGKFNGSYCEEIDDDLLKR 596

Query: 421 KNGNVLKKIGVLWKKPQK 438
           K     KKIGVLWKK QK
Sbjct: 597 KXWKCAKKIGVLWKKQQK 614

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558449|ref|XP_003547519.1| PREDICTED: interactor of constitutive active ROPs 3-like [Glycine max]

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/440 (57%), Positives = 334/440 (75%), Gaps = 12/440 (2%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           +VA  E A T+ AES+ +EL +L  NL E++SL+ENM+NQLR+SKES  QAQAL  ETL 
Sbjct: 183 LVANCENAHTQIAESSDVELLNLTDNLAESLSLVENMRNQLRDSKES-AQAQALVNETLR 241

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD-TSN-ANRNL 118
           QLE AK +VE LRA+  KA+  Y+S A +L++SR R+N LE LVSKLE   TSN  N +L
Sbjct: 242 QLEAAKRTVEFLRADAAKAVNGYNSAALDLDQSRARVNSLEELVSKLEFGLTSNKCNSSL 301

Query: 119 SQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTV 178
           +    G+ +L  ++    +T        +L+ +++E+  LRSA+E A+TK  E QI+ +V
Sbjct: 302 NLADVGNMELKAEVLHKGET--------DLNRIEAEIYSLRSAIESADTKHQEEQIECSV 353

Query: 179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHM 238
           KI+ A+E +EQIK +S  RE +LEAEL++  +D+EELKANLMDKETELQ I EENE L++
Sbjct: 354 KIRKAYELIEQIKSESSKRESQLEAELKRKNADVEELKANLMDKETELQCIVEENEKLNL 413

Query: 239 QLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDT 298
           QL+K++  QRE +L  +LRKL ++V  LKA+LMDKET LQ+ISEENEMLKLEISKR  + 
Sbjct: 414 QLEKSMSSQREHELRKELRKLDESVAGLKADLMDKETTLQSISEENEMLKLEISKRFANG 473

Query: 299 PNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAEL 358
            N+   +AA++E A++AE+EA++KLG++ME+AD+ NR+AAR+AEQLEA+Q+AN   EAEL
Sbjct: 474 GNVVEEVAAQLETAKAAEREAVIKLGIVMEDADRCNRKAARVAEQLEASQAANSIIEAEL 533

Query: 359 RRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLL 418
           RRLK+QSDQWRKAAEAAA+MLS GNNGK  ERS S+D+NYN I  K   P+ +++DDD  
Sbjct: 534 RRLKIQSDQWRKAAEAAAAMLSAGNNGKLTERSMSLDNNYNSIMNKYS-PFCEELDDDFQ 592

Query: 419 KKKNGNVLKKIGVLWKKPQK 438
            KKNGN+LKKIGVLW+KPQK
Sbjct: 593 TKKNGNMLKKIGVLWRKPQK 612

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439892|ref|XP_002279291.1| PREDICTED: interactor of constitutive active ROPs 2, chloroplastic-like [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/438 (57%), Positives = 339/438 (77%), Gaps = 3/438 (0%)

Query: 1   MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
           MVA+SEA+QTK+AESAH+E+Q L+  L +T+SL+E MK QL + KESE +A  +  +T +
Sbjct: 187 MVADSEASQTKHAESAHVEIQRLRIELADTLSLVEEMKTQLNDRKESEARALKVVTQTQM 246

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
           QLETAK + E +R++G+KA+EAY+SI  EL++S  ++N LEGLVSKL+ D  N++   + 
Sbjct: 247 QLETAKAAAETIRSDGVKAMEAYNSITLELDQSNAQVNSLEGLVSKLQEDLVNSSSTSAA 306

Query: 121 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKI 180
           N S D  L ++  EN+DT     L++EL+ ++ EVGQLRSAL+ AE +  E  IQST++I
Sbjct: 307 NPSDDAKLARENGENEDT---NQLKQELNLVRFEVGQLRSALDAAEIRYQEEYIQSTLQI 363

Query: 181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 240
           +SA+EQ E+ + +S  RE ELEAEL+KAK  +E+LK NLMDKET+LQ ISEEN+ L++++
Sbjct: 364 RSAYEQAERTRSESRQREAELEAELRKAKVIVEDLKVNLMDKETKLQNISEENKVLNVKI 423

Query: 241 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPN 300
           ++N   +RE +L  +L+K    + DLK +L+DKETELQ+I+EENEMLKLEI K+E +   
Sbjct: 424 EQNQSNEREPELQMELKKSEATLADLKTSLLDKETELQSITEENEMLKLEIKKKETENDK 483

Query: 301 MNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR 360
           +N    A++EAA++AEKEAL KLG L EEADK++RRA R+ EQL+A Q+AN E EAELRR
Sbjct: 484 VNDEAVAKIEAAKAAEKEALTKLGYLTEEADKNSRRAERVTEQLDATQAANSELEAELRR 543

Query: 361 LKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKK 420
           LKVQSDQWRKAAEAAA+MLSTGNNGK +ER+GS+D+NY+ I  +I  P S+D+DDD  KK
Sbjct: 544 LKVQSDQWRKAAEAAAAMLSTGNNGKIVERTGSLDNNYHTIGARIGSPCSEDMDDDSPKK 603

Query: 421 KNGNVLKKIGVLWKKPQK 438
           KNGN+LKKIGVLWKK QK
Sbjct: 604 KNGNMLKKIGVLWKKGQK 621

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
UNIPROTKB|Q8VXD2	601	p70 "P70 protein" [Nicotiana t	0.920	0.670	0.411	4.4e-68
TAIR|locus:2061758	583	RIP2 "ROP interactive partner	0.805	0.605	0.375	5.2e-49
TAIR|locus:2144040	564	RIP5 "ROP interactive partner	0.751	0.583	0.293	4.5e-31
TAIR|locus:2020342	344	ICR1 "AT1G17140" [Arabidopsis	0.520	0.662	0.301	2e-21
TAIR|locus:2032095	324	RIP4 "AT1G78430" [Arabidopsis	0.468	0.632	0.32	4.5e-21
TAIR|locus:2083951	396	RIP3 "ROP interactive partner	0.714	0.790	0.267	4.2e-15
UNIPROTKB|F1LTH2	851	Eea1 "Protein Eea1" [Rattus no	0.794	0.408	0.263	3e-12
MGI|MGI:2442192	1411	Eea1 "early endosome antigen 1	0.794	0.246	0.259	2.1e-11
WB|WBGene00006754	882	unc-15 [Caenorhabditis elegans	0.899	0.446	0.226	3.1e-11
UNIPROTKB|E1BRE5	1411	EEA1 "Uncharacterized protein"	0.828	0.257	0.212	2.1e-10

UNIPROTKB|Q8VXD2 p70 "P70 protein" [Nicotiana tabacum (taxid:4097)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 172/418 (41%), Positives = 254/418 (60%)

Query:     3 AESEAAQTKNA-ESAHL-----ELQSLKGNLIETISLMENMKNQLRESKESETQAQALA- 55
             +E EA Q ++  +SA L     E+Q LK  L + ++  E  +    ES  +E Q+  +  
Sbjct:   157 SELEAIQKQHELDSAALASALNEIQKLKIQL-DRVADSEATQAHHAESAHAEIQSLRVEL 215

Query:    56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLL--EGLVSKLEADTSN 113
              ETL  +E  +  +   +     ++E  S    +LE S+   + L  EGL +     T +
Sbjct:   216 METLTLVEKLRNQLNDSKESEACSLEEVSKAQMQLEMSKMTEDTLRSEGLKAMDACRTLS 275

Query:   114 ANRNLSQNCSGDYD-LGQKIKENQDTMXXXXXXXXXXXXX--XXVGQLRSALEIAETKLN 170
                  S++     + L  K++ ++ ++                 V +LR+ALE +E K  
Sbjct:   276 LELEKSKDRVASLEELVSKLQSSESSVAAEGNGVTVEADELKAEVSELRAALEASERKYQ 335

Query:   171 EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGIS 230
             E  IQST++I+SA+E +E+ K +S  RE E EA+L + KS+++ELK  LM+KE ELQ IS
Sbjct:   336 EEYIQSTLQIRSAYELVERTKSESTQREAEWEAKLNETKSEVQELKEKLMNKEAELQNIS 395

Query:   231 EENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLE 290
             +EN+GL + +++     +E +L+  L++      DL+ NL+DKE ELQ++ EENE+LK E
Sbjct:   396 DENKGLSLHVEQMQSADKEFELSAQLKQSESISGDLRGNLLDKENELQSLMEENELLKSE 455

Query:   291 ISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSA 350
             I KRE ++  M+    A VEAA++AE EAL+KLG L EEAD+S+R+ AR+ E+L+AAQ+A
Sbjct:   456 IGKRESESTKMSDEALALVEAAKTAESEALIKLGDLTEEADRSSRKVARVTEELDAAQTA 515

Query:   351 NCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLP 408
             N E E ELRRLKVQ DQWRKAAEAAASMLS GNNGK +ER+GS+D  Y+ I GK+  P
Sbjct:   516 NSEMETELRRLKVQCDQWRKAAEAAASMLSAGNNGKYVERTGSLD--YHTIGGKLGSP 571

GO:0051219 "phosphoprotein binding" evidence=IPI

TAIR|locus:2061758 RIP2 "ROP interactive partner 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 149/397 (37%), Positives = 215/397 (54%)

Query:    27 LIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRA-EG-MKAIEAYS 84
             L  T++ ++ +K QL ES+  E     L  ETL  +E  KL  E   A EG  +A E  S
Sbjct:   161 LSSTMNEVQKLKAQLSESENVENLRMEL-NETLSLVE--KLRGELFDAKEGEAQAHEIVS 217

Query:    85 SIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKE---------- 134
                 +LE +   + +L     K+    ++    L Q+ S    L Q +++          
Sbjct:   218 GTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGN 277

Query:   135 -NQDTMXXXXXXXXXXXXXXXVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQ 193
              N D+                + QL+SA+E+ E + +E  IQST++I++A+EQ++++K  
Sbjct:   278 ANGDSSSVEELKEEINVARQEISQLKSAVEVTERRYHEEYIQSTLQIRTAYEQVDEVKSG 337

Query:   194 SGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK---------NL 244
                RE EL  EL+K K++ + L   LMDKE +L+ + +ENE L+ ++ +         N 
Sbjct:   338 YAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENS 397

Query:   245 MCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSN 304
             + Q E +   +L+KL   V +L+ANLMDKE ELQ++  + E L+      E++T     N
Sbjct:   398 LNQNEPEDTGELKKLESDVMELRANLMDKEMELQSVMSQYESLR-----SEMETMQSEKN 452

Query:   305 LAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQ 364
              A +         EAL KLG L EEADKS +RA    EQL AAQ  N E EAELRRLKVQ
Sbjct:   453 KAID---------EALAKLGSLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQ 503

Query:   365 SDQWRKAAEAAASMLSTGNN-----GKCMERSGSIDS 396
              DQWRKAAEAAA+MLS GNN     GK +ER+GS++S
Sbjct:   504 CDQWRKAAEAAATMLSGGNNNNNSNGKYVERTGSLES 540

GO:0009507 "chloroplast" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

TAIR|locus:2144040 RIP5 "ROP interactive partner 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 4.5e-31, P = 4.5e-31
 Identities = 104/354 (29%), Positives = 193/354 (54%)

Query:     1 MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
             MVA SEA   K AE  + E+Q L+GNL++T+  +EN +NQL++ + SE + +ALA ETL 
Sbjct:   183 MVASSEAGHVKQAELYNSEVQLLRGNLMDTLFHVENFRNQLKDCEISEAETEALATETLR 242

Query:    61 QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
             QLE AK +VE L+++G KA+E+Y  +A ELE+S++R+  LE LV+KL+ + ++   +  +
Sbjct:   243 QLENAKKAVEELKSDGTKAVESYKKMAVELEQSKSRMVWLEALVNKLQNNPADLENH--E 300

Query:   121 NCSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGQLRSALEIAETKLNEGQIQSTVKI 180
                 DY+  ++ + N+                  V +LR+ALE ++ K  EG ++++ ++
Sbjct:   301 ILLKDYESLRRGESNE-------MDEEVSSLRCEVERLRAALEASDKKDQEGNVEASSRL 353

Query:   181 KSAFEQLEQIK-HQSGLREVEL-----EAELQKAKSDIEELKANLMDKETELQGISEENE 234
             +   E   ++K  +S + E++      E ELQ    + +     LM  + E+  +  E +
Sbjct:   354 RIQAELQSELKIAKSEIDELKARLMDKETELQFISEERDNFSMKLMKNQKEID-VEAELK 412

Query:   235 GLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKR 294
              L   ++ NL      +   +L+ ++   E LK+++   ET++Q+       LKL I+  
Sbjct:   413 KLREAIE-NLKADLMDK-ETELQIVSDENETLKSDIHKSETDVQDA-----FLKLGIAME 465

Query:   295 ELDTPNMNS-NLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAA 347
             E D  +  +  +  ++EA +++  E   +L  L  ++++  R+AA  A  + +A
Sbjct:   466 EADKSSKKAVRVTEQLEATQASNSEMETELRKLKVQSNQW-RKAAEAATAMLSA 518

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=RCA

TAIR|locus:2020342 ICR1 "AT1G17140" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 77/255 (30%), Positives = 139/255 (54%)

Query:   155 VGQLRSALEIAETKLNEGQIQSTVKI-KSAFEQLEQIKHQSGLREVELEAELQKAKSDIE 213
             +GQ +    I++ +   GQ Q  +++ K      E +K Q+   E+  +++     + +E
Sbjct:    58 LGQKKLGGRISDLESQLGQAQEELRLLKEQLANAEAVKKQAQ-DELHKKSKKPNPLARVE 116

Query:   214 E--LKANLMDKETELQG-ISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVED----L 266
             E   +A  +D++ E+ G + +E +   + ++K  + + E +  ND  +   A ED    L
Sbjct:   117 ESATEAERIDRD-EIPGDVQKETDVFEVPVEKIAVEEEELRSGNDEAEKLVAKEDEIKML 175

Query:   267 KANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLL 326
             KA L D E E +++ +ENE LK           N  S+ A+E+   ++ E E + K+  +
Sbjct:   176 KARLYDMEKEHESLGKENESLK-----------NQLSDSASEISNVKANEDEMVSKVSRI 224

Query:   327 MEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGN--- 383
              EE ++S  + A + E+LE+ + A    EAE+++L+VQ++QWRKAA+AAA++LS G    
Sbjct:   225 GEELEESRAKTAHLKEKLESMEEAKDALEAEMKKLRVQTEQWRKAADAAAAVLS-GEFEM 283

Query:   384 NGKCMERSGSIDSNY 398
             NG+  +RSGS +  Y
Sbjct:   284 NGR--DRSGSTEKYY 296

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0090404 "pollen tube tip" evidence=IDA

GO:2000012 "regulation of auxin polar transport" evidence=IMP

TAIR|locus:2032095 RIP4 "AT1G78430" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 4.5e-21, P = 4.5e-21
 Identities = 72/225 (32%), Positives = 118/225 (52%)

Query:   179 KIKSAFEQLEQIKHQSGLREV---ELEAELQKAKSDIEELKANLMDKETELQGISEENEG 235
             ++  A E+L  +K Q    E      + EL + KS      A   D   ++ G   +   
Sbjct:    76 QLGQAQEELRLLKQQLAKAEAAKKRAQEELHRKKSKKPNTPAPERD---DIPGDGHQETD 132

Query:   236 LHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE 295
             +   LD+    + E   N++L      +  LKA L D E E  ++SEENE LK ++ K  
Sbjct:   133 VFEVLDEKAK-ESEKTKNDELASKEDQINVLKARLYDLEKERVSLSEENETLKDQLKKT- 190

Query:   296 LDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAE 355
              DT         E+  A++ E E   K+  + EE ++SN   A++ ++LE+ + A    E
Sbjct:   191 -DT---------EMSCAKAKEDEIASKVSQIGEELEESNETTAKLKKKLESVEEAKETLE 240

Query:   356 AELRRLKVQSDQWRKAAEAAASMLSTG--NNGKCMERSGSIDSNY 398
             AE+++LKVQ++QWRKAA+AAA++LS G   NG+  E+ GS++ ++
Sbjct:   241 AEMKKLKVQTEQWRKAADAAAAVLSGGVEMNGRFSEQCGSMEKHF 285

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2083951 RIP3 "ROP interactive partner 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 90/336 (26%), Positives = 164/336 (48%)

Query:     4 ESEAAQTKNA-ESAHLELQSLKGNLIETISLMENMKNQLRESKESE-TQAQALARETLLQ 61
             ES  +Q +   + A  EL   +    E     E+ K+QL +   SE ++ + L + +  +
Sbjct:    77 ESTISQLQEELKKAKEELNRSEALKREAQEEAEDAKHQLMDINASEDSRIEELRKLSQER 136

Query:    62 LETAKLSVEAL-RAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
              +T +  +EA+ R  GM +  A SS  +E+++ +++  L E   S+LE       R+L +
Sbjct:   137 DKTWQSELEAMQRQHGMDST-ALSSAINEVQKLKSK--LFES-ESELEQSKYEV-RSLEK 191

Query:   121 NCSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGQLRSALEIAETKLNEGQIQSTVKI 180
                   +     +++  +M               + QL+SA+E AET+  E  IQST++I
Sbjct:   192 LVRQLEEERVNSRDSSSSMEVEELKEAMNLSRQEITQLKSAVEAAETRYQEEYIQSTLQI 251

Query:   181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL 240
             +SA+EQ E +K +   RE EL  EL + K +IE L+  LM+K  E     +E+ G   +L
Sbjct:   252 RSAYEQTEAVKSRYSQREAELTEELNRTKDEIEGLRKELMEKVKE-----DESTGDLKKL 306

Query:   241 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN---ISEENEMLKLEISKRELD 297
             + +LM  R S ++ ++      ++ L++  M+K+ E  N   +  E + +K++  +    
Sbjct:   307 ESDLMEVRGSLMDKEME-----LQILRS-AMEKKVETANTEAMEAELKRVKIQCEQWRKA 360

Query:   298 TPNMNSNLAAEVEAARSAE-KEALMKLGLLMEEADK 332
                  S L  + E   S E  + L K G+L+++  K
Sbjct:   361 AETAASILNNDEERTDSIETSKMLKKFGVLLKKNHK 396

GO:0005634 "nucleus" evidence=IDA

GO:0005874 "microtubule" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IDA

GO:0043622 "cortical microtubule organization" evidence=IDA

UNIPROTKB|F1LTH2 Eea1 "Protein Eea1" [Rattus norvegicus (taxid:10116)]

 Score = 196 (74.1 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 100/379 (26%), Positives = 175/379 (46%)

Query:     6 EAAQTKNAESA-H---LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQ 61
             EA   KN ++A H   L+ Q L+  L  +   ++ ++ +LRE  E+   AQ L +E L +
Sbjct:   370 EALSRKNTQAALHQRDLDCQQLQARLTASEGSLQRIQGELREKGEA---AQKL-KEELRE 425

Query:    62 LETAK--LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS-NANRNL 118
             +ET    L VE  + +  +  +    +  + E S+    LLE      EA       R L
Sbjct:   426 VETKHQHLKVEFKQLQQQREEKEQHGLQLQGEVSQLHSKLLETERQLGEAHGRLKEQRQL 485

Query:   119 SQNCSGDYDLGQKIKENQDTMXXXXXXXXXXXXXXXVGQLRSALEIAETKLNEGQI--QS 176
             S     D +  Q++ + Q  +                 +L+  LE ++ +  E Q   QS
Sbjct:   486 SSEKLMDKE--QQVADLQLKLSRLEEQLKEKVTNST--ELQHQLEKSKQQHQEQQALQQS 541

Query:   177 TV-KIKSAFEQLEQIKHQSGLREVE---LEAELQKAKSDIEELKANLMDKETELQGISEE 232
             T  K++ A   LEQ+  Q G ++ +   LEA LQK+K +I  L+    D   ++Q    E
Sbjct:   542 TTAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKSKENISLLEKEREDLYAKIQAGEGE 601

Query:   233 NEGLHMQLDKNLMCQRE-SQLNNDLRKLAQAVEDLKANLMDK--ETELQNISEENEMLKL 289
                L+   +KN   Q++ +QL   L+  +++ +  + NL D+  E +    + ++ +L L
Sbjct:   602 TAVLNQLQEKNHALQQQLTQLMEKLKNQSESHKQAEENLHDQVQEQKAHLRAAQDRVLSL 661

Query:   290 EISKRELDTP-NMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQ 348
             E S  EL +  N +    ++++    A+ E L     L  EA K+ +RA  +   L+ AQ
Sbjct:   662 ETSVSELSSQLNESKEKVSQLDIQIKAKTELL-----LSAEAAKTAQRAD-LQNHLDTAQ 715

Query:   349 SANCEAEAELRRLKVQSDQ 367
             +A  + + EL ++  Q DQ
Sbjct:   716 NALQDKQQELNKVSAQLDQ 734

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2442192 Eea1 "early endosome antigen 1" [Mus musculus (taxid:10090)]

 Score = 191 (72.3 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 99/381 (25%), Positives = 172/381 (45%)

Query:     4 ESEAAQTKNAESAH---LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
             ES + +T  A S H   L+ Q L+  L  + S ++  + +L E  E+   AQ L RE L 
Sbjct:   328 ESASRKTLQA-SLHQRDLDCQQLQARLTASESSLQRAQGELSEKAEA---AQKL-REELR 382

Query:    61 QLETAK--LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL 118
             ++E+ +  L VE  + +  +  +    +  + E S+    LLE      E     A+  L
Sbjct:   383 EVESTRQHLKVEVKQLQQQREEKEQHGLQLQGEVSQLHCKLLE-----TERQLGEAHGRL 437

Query:   119 S-QNCSGDYDLGQKIKENQDT-MXXXXXXXXXXXXXXXVGQLRSALEIAETKLNEGQI-- 174
               Q       L +K ++  D  +                 +L+  LE ++ +  E Q   
Sbjct:   438 KEQRQLSSEKLMEKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLEKSKQQHQEQQALQ 497

Query:   175 QS-TVKIKSAFEQLEQIKHQSGLREVE---LEAELQKAKSDIEELKANLMDKETELQGIS 230
             QS T K++ A   LEQ+  Q G ++ +   LEA LQK K  +  L+    D   ++Q   
Sbjct:   498 QSATAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKGKESVSLLEKEREDLYAKIQAGE 557

Query:   231 EENEGLHMQLDKNLMCQRE-SQLNNDLRKLAQAVEDLKANLMDK--ETELQNISEENEML 287
              E   L+   +KN   Q++ +QL   L+  +++ +  + NL D+  E +    + ++ +L
Sbjct:   558 GETAVLNQLQEKNHALQQQLTQLTEKLKNQSESHKQAEENLHDQVQEQKAHLRAAQDRVL 617

Query:   288 KLEISKRELDTP-NMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEA 346
              LE S  EL +  N +    ++++    A+ E L     L  EA K+ +RA  +   L+ 
Sbjct:   618 SLETSVSELSSQLNESKEKVSQLDIQIKAKTELL-----LSAEAAKAAQRAD-LQNHLDT 671

Query:   347 AQSANCEAEAELRRLKVQSDQ 367
             AQ A  + + EL ++ VQ DQ
Sbjct:   672 AQHALQDKQQELNKVSVQLDQ 692

GO:0005515 "protein binding" evidence=IPI

GO:0005545 "1-phosphatidylinositol binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005769 "early endosome" evidence=ISO;ISA;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IDA

GO:0006897 "endocytosis" evidence=ISO

GO:0006906 "vesicle fusion" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=ISO

GO:0030742 "GTP-dependent protein binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0055037 "recycling endosome" evidence=ISO

WB|WBGene00006754 unc-15 [Caenorhabditis elegans (taxid:6239)]

 Score = 187 (70.9 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 95/419 (22%), Positives = 189/419 (45%)

Query:     3 AESEAAQTKNA-ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQAL--ARETL 59
             AE E +Q ++      LEL S++  L E      + +++L  +    TQ ++   A   L
Sbjct:   265 AERERSQLQSQLHQVQLELDSVRTALDEESIARSDAEHKLNLANTEITQWKSKFDAEVAL 324

Query:    60 LQLETAKLSVEALR--AEGMKAIEAYSSIASELERSRTRINL-LEGLVSKLE-ADTSNAN 115
                E   L  + L+  AE  + IE      S+LE++++R+   +E L+  LE A  + A 
Sbjct:   325 HHEEVEDLRKKMLQKQAEYEEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAL 384

Query:   116 RNLSQNCSGDYDLGQ-KIKENQDTMXXXXXXXXXXXXXXXVGQLR----SALEIAETKLN 170
                ++    +  +G+ K++ ++ T+               + +++     A+E  E    
Sbjct:   385 LERARE-QLERQVGELKVRIDEITVELEAAQRELRAVNAELQKMKHLYEKAVEQKEALAR 443

Query:   171 EGQ-IQSTV-KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQG 228
             E + +   + + K A     +  H+  L    L  E+++ ++ ++E  A   D E   Q 
Sbjct:   444 ENKKLHDELHEAKEALADANRKLHELDLENARLAGEIRELQTALKEADAQRRDAENRAQR 503

Query:   229 ISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQ-AVEDLKANLMDKETELQN-ISEENEM 286
                E + L +++++ L  ++E ++   LRK  Q  ++ L A L D E  +++ IS   + 
Sbjct:   504 ALAELQALRIEMERRLQ-EKEEEMEA-LRKNLQFEIDRLIAALADAEARMKSEISRLKKK 561

Query:   287 LKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEA 346
              + EI++ E+   N+N    A +EA ++ +K++  +L +L    + + R+  ++ +Q   
Sbjct:   562 YQAEIAELEMTVDNLNR---ANIEAQKTIKKQS-EQLKILQASLEDTQRQLQQVLDQYAL 617

Query:   347 AQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKI 405
             AQ       AEL   K   D   +A + A   L   N G+  +   SI++N   I  K+
Sbjct:   618 AQRKVAALSAELEECKTALDNAIRARKQAEVDLEEAN-GRISDLI-SINNNLTSIKNKL 674

GO:0003774 "motor activity" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IGI;IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IGI;IMP

GO:0051493 "regulation of cytoskeleton organization" evidence=IGI;IMP

GO:0032982 "myosin filament" evidence=IDA

GO:0008092 "cytoskeletal protein binding" evidence=IPI

UNIPROTKB|E1BRE5 EEA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 84/395 (21%), Positives = 167/395 (42%)

Query:    20 LQSLKGNLIETISLMENMKNQLR---ESKESETQA--QALARETLLQLETAKLSVEALRA 74
             L++L     E ISL+E  +  L    ++ E ET    Q   +   LQ++  +L+ E L+ 
Sbjct:   528 LEALLQKSKENISLLEKEREDLYAKIQAGEGETAVLNQLQEKNHALQIQVTQLT-EKLKN 586

Query:    75 EGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKE 134
             +     +A  ++  +++  +  +   +  V  LEA+ +  +  L+++      L  ++K 
Sbjct:   587 QSESHKQAQENLHEQVQEQKAHLRAAQDRVLSLEANITELSSQLNESKEKVSQLDVQVKA 646

Query:   135 NQDTMXXXXXXXXXXXXXXX--VGQLRSALEIAETKLNEGQIQS---TVKIKSAFE---Q 186
               + +                 +   + AL+  + +LN+  +Q    T K+    E   Q
Sbjct:   647 KTELLLSAEASKAAQRADLQNHLDTAQHALQDKQQELNKVSVQLDQVTAKLNDKQEYCAQ 706

Query:   187 LE----QIKHQSGLREV---ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQ 239
             LE      K Q    E    ELE +L+K ++D+ + KA+   KE  LQ + ++ +    +
Sbjct:   707 LEANLKDYKEQHLYLEQKTEELEGQLKKLEADVLDAKAS---KEQALQELQQQRQQ-STE 762

Query:   240 LDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNIS---EENEMLKLEISKREL 296
             LD  +  +   QL  +   ++ A  DL+      E   Q IS   EEN  LK  + K   
Sbjct:   763 LDLRI-AELSKQLEAEREAMSSAKSDLQKKSEALEQAKQQISKQEEENASLKKNLEKSSQ 821

Query:   297 DTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEA 356
             DT     +L  +++AA S  ++  ++   L+++   +  + ++ +E  +  +    E E 
Sbjct:   822 DTSKQLKDLDCKMQAATSELQQVKLEKDTLLKDLTSTKEKLSKSSESFKKRKE---ELEK 878

Query:   357 ELRRLKVQSDQWRKAAEAAASMLSTGNNGKCMERS 391
             E+ + K    +  K+ +     L         ER+
Sbjct:   879 EIEKGKAAVAEMEKSYQEVKQQLQVQTESVAKERN 913

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	438
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.003
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 66/284 (23%), Positives = 129/284 (45%), Gaps = 3/284 (1%)

Query: 14  ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALR 73
           E    +L+ LK  L      +E ++++L E +E   + +    E   +LE  +  +E+L 
Sbjct: 712 EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771

Query: 74  AEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIK 133
               K  E    +  + +  +  +  LE  + + E       R L         L Q+I+
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 134 ENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQ 193
           E ++  E + LEE+L  L+ E+ +L   LE  + +L E +     +++   ++LE+ K +
Sbjct: 832 ELEE--EIEELEEKLDELEEELEELEKELEELKEELEELE-AEKEELEDELKELEEEKEE 888

Query: 194 SGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLN 253
                 ELE+EL + K +IE+L+  L + E +L+ +  E   L  +L++      E++L 
Sbjct: 889 LEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELE 948

Query: 254 NDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD 297
            ++ +L + +E L    +    E + + E  E LK +    E  
Sbjct: 949 REIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEA 992

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 66/329 (20%), Positives = 148/329 (44%), Gaps = 8/329 (2%)

Query: 34  MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS 93
           +E ++ ++ E +E   + +    E   +LE  +  +E LR E  +     S++  +L R 
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 94  RTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS 153
              +  LE  +++L  + +     + +      +  +++ E +  +E   LE ++  LK 
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE--LEAQIEQLKE 796

Query: 154 EVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIE 213
           E+  LR AL+    +L     ++    +   E LE+    +  R  +LE ++++   DIE
Sbjct: 797 ELKALREALDELRAELTLLNEEAANL-RERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 214 ELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK 273
            L A + + E  ++ +  E E L  +     + +  + L ++L +L++ + +L++   + 
Sbjct: 856 SLAAEIEELEELIEELESELEALLNERAS--LEEALALLRSELEELSEELRELESKRSEL 913

Query: 274 ETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKS 333
             EL+ + E+   L+L +   E+   N+   L+ E        +EA      + ++ +++
Sbjct: 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL---TLEEAEALENKIEDDEEEA 970

Query: 334 NRRAARMAEQLEAAQSANCEAEAELRRLK 362
            RR  R+  +++     N  A  E   LK
Sbjct: 971 RRRLKRLENKIKELGPVNLAAIEEYEELK 999

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 77/344 (22%), Positives = 141/344 (40%), Gaps = 42/344 (12%)

Query: 19  ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK 78
           EL  L+  L +    ++++KN+LR  ++          E   QLE  +  +E L+ E   
Sbjct: 675 ELAELEAQLEKLEEELKSLKNELRSLEDLL-------EELRRQLEELERQLEELKRELAA 727

Query: 79  AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDT 138
             E    + S LE     +  LE  + +L+         L             ++E    
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELE-----------SLEEALAK 776

Query: 139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLRE 198
                L+EE+  L+ +   L+  LE  E +L E         +   + LE+       R 
Sbjct: 777 -----LKEEIEELEEKRQALQEELEELEEELEE--------AERRLDALERELESLEQRR 823

Query: 199 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK 258
             LE E+++ + +IEEL+  L + E EL+ + +E E L  +L++      + +L ++L++
Sbjct: 824 ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE--AEKEELEDELKE 881

Query: 259 LAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKE 318
           L +  E+L+  L + E+EL  + EE E L+  + + E            E       E E
Sbjct: 882 LEEEKEELEEELRELESELAELKEEIEKLRERLEELEAK---------LERLEVELPELE 932

Query: 319 ALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLK 362
             ++         +  R   R+ E++EA    N  A  E   ++
Sbjct: 933 EELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVE 976

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 60/257 (23%), Positives = 121/257 (47%), Gaps = 11/257 (4%)

Query: 130 QKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQ--IQSTVKIKSAFEQL 187
           +++KE ++ +E   L  EL  L+ ++ +LR  +   E ++ E Q  + +     S  EQ 
Sbjct: 246 EELKEAEEELEE--LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303

Query: 188 EQI----KHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKN 243
           +QI          +  ELEA+L++ +S ++EL   L + E +L+ + EE E L  +L++ 
Sbjct: 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363

Query: 244 LMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNS 303
                E  L + L +L + +E L++ +   E ++ +++ E E L+  + + E     +  
Sbjct: 364 EAELEE--LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421

Query: 304 NLAAEVEAARSAEKEAL-MKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLK 362
            +   ++    AE + L  +L  L EE ++      R+ E LE  +    EAE  L   +
Sbjct: 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481

Query: 363 VQSDQWRKAAEAAASML 379
            +  Q +   ++   + 
Sbjct: 482 RELAQLQARLDSLERLQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 41/331 (12%)

Query: 38  KNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEA------YSSIASELE 91
           + +L  ++E+  + + L  E   QLE  KL  +A +AE  + ++A       + + ++L+
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLE--KLERQAEKAERYQELKAELRELELALLLAKLK 235

Query: 92  RSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSL 151
             R  +  LE  +S+LE +       L +                        E+E+  L
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEE-----------------------AEKEIEEL 272

Query: 152 KSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSD 211
           KSE+ +LR  LE  + +L E + +   +++     L +   +      ELE  L++ K  
Sbjct: 273 KSELEELREELEELQEELLELKEEIE-ELEGEISLLRERLEELENELEELEERLEELKEK 331

Query: 212 IEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLM 271
           IE LK  L ++ET L+ + +    L    +     + E +L+  L +L +  E L+  L 
Sbjct: 332 IEALKEELEERETLLEELEQLLAELEEAKE-----ELEEKLSALLEELEELFEALREELA 386

Query: 272 DKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEAD 331
           + E EL  I  E E LK EI   E         L+  +E  +   KE   +L  L  E +
Sbjct: 387 ELEAELAEIRNELEELKREIESLEER----LERLSERLEDLKEELKELEAELEELQTELE 442

Query: 332 KSNRRAARMAEQLEAAQSANCEAEAELRRLK 362
           + N     + EQLE  +    E E EL  L+
Sbjct: 443 ELNEELEELEEQLEELRDRLKELERELAELQ 473

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 76/315 (24%), Positives = 138/315 (43%), Gaps = 32/315 (10%)

Query: 63  ETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNC 122
           E A+L     R EG+K     SS+ SEL R   R++ L   +S          + + Q  
Sbjct: 672 EPAELQRLRERLEGLKREL--SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 123 SGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKS 182
             +  L ++++E ++ + S  LE+E+ ++KSE+ +L + +E  E  L+        K++ 
Sbjct: 730 QEEEKLKERLEELEEDLSS--LEQEIENVKSELKELEARIEELEEDLH--------KLEE 779

Query: 183 AFEQLEQIKHQSGLREV-----ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH 237
           A   LE     S + E+     +LE E+ + ++ + E++  L     E + + +E + L 
Sbjct: 780 ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839

Query: 238 MQLD-----KNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292
            Q          + +    LN    +L + +E+L+A L D E+ L ++ +E + L+ ++ 
Sbjct: 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899

Query: 293 KRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQS--- 349
           + E         L A++E  R    E   KL  L EE  +         E  E   S   
Sbjct: 900 ELE----RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED 955

Query: 350 --ANCEA-EAELRRL 361
             A  +  E E+R L
Sbjct: 956 VQAELQRVEEEIRAL 970

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 70/300 (23%), Positives = 129/300 (43%), Gaps = 30/300 (10%)

Query: 66  KLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGD 125
           K S  A + E  +  E  + + ++LE+    +  L+  +  LE       R L +     
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE----- 713

Query: 126 YDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFE 185
                + +  +   E   LEEEL  L+S        LE    +L E   +   +++   E
Sbjct: 714 ----LERQLEELKRELAALEEELEQLQSR----LEELEEELEELEEELEELQERLEELEE 765

Query: 186 QLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLM 245
           +LE ++        +L+ E+++ +   + L+  L + E EL+      + L  +L+    
Sbjct: 766 ELESLEEA----LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE- 820

Query: 246 CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNL 305
            QR  +L  ++ +L + +E+L+  L + E EL+ + +E E LK E+ + E          
Sbjct: 821 -QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELE---------- 869

Query: 306 AAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQS 365
            AE E      KE   +   L EE  +     A + E++E  +    E EA+L RL+V+ 
Sbjct: 870 -AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVEL 928

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 69/307 (22%), Positives = 126/307 (41%), Gaps = 10/307 (3%)

Query: 9   QTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLS 68
           Q   AE   LEL  L   L E    +E ++ +L   +E   + Q    E   ++E  K  
Sbjct: 216 QELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSE 275

Query: 69  VEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDL 128
           +E LR E  +  E    +  E+E     I+LL   + +LE +       L +       L
Sbjct: 276 LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEAL 335

Query: 129 GQKIKENQDTMES-KHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQL 187
            ++++E +  +E  + L  EL   K E+ +  SAL     +L E        ++    +L
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFE-------ALREELAEL 388

Query: 188 EQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQ 247
           E    +      EL+ E++  +  +E L   L D + EL+ +  E E L  +L++    +
Sbjct: 389 EAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELN--E 446

Query: 248 RESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAA 307
              +L   L +L   +++L+  L + + ELQ + +E   L+  + + E +        A 
Sbjct: 447 ELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAV 506

Query: 308 EVEAARS 314
                  
Sbjct: 507 LEALESG 513

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 45/211 (21%), Positives = 96/211 (45%), Gaps = 5/211 (2%)

Query: 173 QIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEE 232
             +S++  K   ++LE+   +   +  +LE EL+  K+++  L+  L +   +L+ +  +
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717

Query: 233 NEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292
            E L  +L      +   QL + L +L + +E+L+  L + +  L+ + EE E L+  ++
Sbjct: 718 LEELKRELAALE--EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775

Query: 293 KRELDTPNMNSNLAAEVEAARSAEKEALM---KLGLLMEEADKSNRRAARMAEQLEAAQS 349
           K + +   +     A  E     E+E      +L  L  E +   +R  R+ +++E  + 
Sbjct: 776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEE 835

Query: 350 ANCEAEAELRRLKVQSDQWRKAAEAAASMLS 380
              E E +L  L+ + ++  K  E     L 
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELE 866

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 66/275 (24%), Positives = 132/275 (48%), Gaps = 28/275 (10%)

Query: 130 QKIKENQDTMESKHLEEELSSLKSEV------GQLRSALEIAETKLNEGQI-QSTVKIKS 182
           + ++  +D +E   LE++L  L+ +        +L++ L   E  L   ++ +   +++ 
Sbjct: 186 ENLERLEDLLE--ELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEE 243

Query: 183 AFEQLEQIKHQSGLREVEL---EAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQ 239
             E+L +++ +    + EL   E E+++ KS++EEL+  L + + EL  + EE E L  +
Sbjct: 244 LEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEEL--E 301

Query: 240 LDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETEL---QNISEENEMLKLEISKREL 296
            + +L+ +R  +L N+L +L + +E+LK  +   + EL   + + EE E L  E+ + + 
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361

Query: 297 DTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEA-----------DKSNRRAARMAEQLE 345
           +     S L  E+E    A +E L +L   + E            +    R  R++E+LE
Sbjct: 362 ELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLE 421

Query: 346 AAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLS 380
             +    E EAEL  L+ + ++  +  E     L 
Sbjct: 422 DLKEELKELEAELEELQTELEELNEELEELEEQLE 456

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 65/270 (24%), Positives = 123/270 (45%), Gaps = 14/270 (5%)

Query: 38  KNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI 97
           + +L E +E   +A+    E   +L+  +  +E LR E  +  E    +  EL      I
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297

Query: 98  NLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQ 157
           + LE     L    +N  R L +  +   +L  K+ E  +  E   LEE+L  LK E+  
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE--ELAELEEKLEELKEELES 355

Query: 158 LRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA 217
           L + LE  E +L E       +++   EQLE ++     +  +LE ++    ++IE L+A
Sbjct: 356 LEAELEELEAELEE----LESRLEELEEQLETLRS----KVAQLELQIASLNNEIERLEA 407

Query: 218 NLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETEL 277
            L   E   + + +E E L  +L++  + + +++L     +L + +E+L+  L   E  L
Sbjct: 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELE----ELEEELEELQEELERLEEAL 463

Query: 278 QNISEENEMLKLEISKRELDTPNMNSNLAA 307
           + + EE E  +  +   E +   + + L +
Sbjct: 464 EELREELEEAEQALDAAERELAQLQARLDS 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 46/251 (18%), Positives = 100/251 (39%), Gaps = 16/251 (6%)

Query: 140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREV 199
           E + LEE++  L+ ++ +L  AL     +L E + +   +++   E+L +          
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELE-EELEQLRKELEELSRQISALRKDLA 736

Query: 200 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGL---------HMQLDKNLMCQRES 250
            LEAE+++ +  I +L   L + E E++ + E  E            ++  +  + Q + 
Sbjct: 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796

Query: 251 QLNND---LRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMN---SN 304
           +L      L +L   +  L     +    L+++       +  +   E     ++    +
Sbjct: 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856

Query: 305 LAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQ 364
           LAAE+E      +E   +L  L+ E        A +  +LE       E E++   L+ +
Sbjct: 857 LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916

Query: 365 SDQWRKAAEAA 375
            ++ R+     
Sbjct: 917 LEELREKLAQL 927

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 14/251 (5%)

Query: 144 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEA 203
           L+ ELSSL+SE+ ++ + L+    +L++   +   +I+   EQLEQ + +   R  ELE 
Sbjct: 686 LKRELSSLQSELRRIENRLDELSQELSDAS-RKIGEIEKEIEQLEQEEEKLKERLEELEE 744

Query: 204 ELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDK---NLMCQRESQLNNDLRKLA 260
           +L   + +IE +K+ L + E  ++ + E+   L   L+     L   R  ++  +L KL 
Sbjct: 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLE 804

Query: 261 QAVEDLKANLMDKETELQNISEENEMLKLEI----SKRELDTPNMNS------NLAAEVE 310
           + V  ++A L + E +L  ++ E E L+ EI     +R      + S      NL  + E
Sbjct: 805 EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864

Query: 311 AARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRK 370
                 +E    L  L        +    +  QL   +    E EA++ + + +  + + 
Sbjct: 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924

Query: 371 AAEAAASMLST 381
             EA    LS 
Sbjct: 925 KLEALEEELSE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 47/216 (21%), Positives = 99/216 (45%), Gaps = 16/216 (7%)

Query: 185 EQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH-----MQ 239
           E+L++   ++     EL AELQ+ +  +EEL+  + + E E++ + +E   L      ++
Sbjct: 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301

Query: 240 LDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTP 299
             K ++ +R + L   L +L   +E+L++ L +   EL  + E+ E LK E+        
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL-------- 353

Query: 300 NMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELR 359
               +L AE+E   +  +E   +L  L E+ +    + A++  Q+ +  +     EA L 
Sbjct: 354 ---ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE 410

Query: 360 RLKVQSDQWRKAAEAAASMLSTGNNGKCMERSGSID 395
           RL+ + ++ ++  E     L      +       ++
Sbjct: 411 RLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 6/194 (3%)

Query: 171 EGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGIS 230
                S ++ +   E+LE+   +   +  ELE  L + + ++EEL+  L     EL+ +S
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 231 EENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLE 290
            +   L   L +        QL   + +L++ + +L+A + + E  L+   EE    + E
Sbjct: 726 RQISALRKDLARLE--AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783

Query: 291 ISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSA 350
           I + E     +   L A  EA      E    L LL EEA     R   +  ++ A +  
Sbjct: 784 IEELEAQIEQLKEELKALREALDELRAE----LTLLNEEAANLRERLESLERRIAATERR 839

Query: 351 NCEAEAELRRLKVQ 364
             + E ++  L   
Sbjct: 840 LEDLEEQIEELSED 853

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 51/229 (22%), Positives = 90/229 (39%), Gaps = 16/229 (6%)

Query: 12  NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLE----TAKL 67
             E    ELQ     L   IS +E  K  LRE   +  +        L +LE        
Sbjct: 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337

Query: 68  SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYD 127
            +  L  +  +  E   S+ +ELE     +  LE  + +LE         ++Q       
Sbjct: 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ------- 390

Query: 128 LGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQL 187
           L  +I    + +E   LE  L  L+    +L+  +E    KL E +++   ++++  E+L
Sbjct: 391 LELQIASLNNEIER--LEARLERLEDRRERLQQEIEELLKKLEEAELK---ELQAELEEL 445

Query: 188 EQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGL 236
           E+   +       LE  L++ + ++EE +  L   E EL  +    + L
Sbjct: 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 41/194 (21%), Positives = 78/194 (40%), Gaps = 31/194 (15%)

Query: 48  ETQAQALARETLLQLETAKLSVEALRAEGMKAIEAY------------------------ 83
            T  +A A E   Q+   +  V  LRAE                                
Sbjct: 76  ATDVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLF 135

Query: 84  ----SSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTM 139
               S++ ++LE    +I  LE  ++ L+A    A R   +  S + +  +K+KE     
Sbjct: 136 ESRKSTLRAQLELILAQIKQLEAELAGLQAQL-QALRQQLEVISEELEARRKLKEKGLVS 194

Query: 140 ESKHL--EEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLR 197
             + L  E E +  + E+G+L + LE+ + +++E Q++     ++  E++ +   ++  R
Sbjct: 195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQAR 254

Query: 198 EVELEAELQKAKSD 211
             EL   L KA+  
Sbjct: 255 LAELRERLNKARDR 268

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 51/238 (21%), Positives = 99/238 (41%), Gaps = 22/238 (9%)

Query: 4   ESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLE 63
           E +    +       E+ SL+ ++ E    +E+ + +L        + +A   + L ++E
Sbjct: 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-------KLEAEIDKLLAEIE 339

Query: 64  TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCS 123
             +  +E  R    K  E Y+ +  ELE  R  +  ++   ++   +  +    L     
Sbjct: 340 ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE---- 395

Query: 124 GDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVK---I 180
               L ++I E +   E   L+EEL  L  E+  L +A+   E K+NE + +   K   I
Sbjct: 396 ---KLKREINELKR--ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI 450

Query: 181 KSAFEQLEQIKHQSGLREVE---LEAELQKAKSDIEELKANLMDKETELQGISEENEG 235
           K    +LEQ+       E E   L+ E  + + ++ +L+  L + E + +   E   G
Sbjct: 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 46/226 (20%), Positives = 91/226 (40%), Gaps = 7/226 (3%)

Query: 18  LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGM 77
           LEL+     L   ISL+     +L    E   +     +E +  L+      E L  E  
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 78  KAIEAYSSIASELERSR-TRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQ 136
           + +        ELE      +  LE L   L  + +     L++  +   +L ++I+  +
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 137 DT-----MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIK 191
           +         + L+EEL  L++E+ +L++ LE    +L E + Q   +++   ++LE+  
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE-ELRDRLKELEREL 469

Query: 192 HQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH 237
            +       LE EL   ++ ++ L+A     +     +     GL 
Sbjct: 470 AELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 63/298 (21%), Positives = 115/298 (38%), Gaps = 26/298 (8%)

Query: 102 GLVSKLEADTSN-ANRNLSQNCSGDYDLGQKIKENQDTMES--KHLEEELSSLKSEVGQL 158
            L+ +L  D +N   R           L   I    + +E+  K   E+   L  E+  L
Sbjct: 182 DLIDRLAGDLTNVLRRRKKSE------LPSSILSEIEALEAELKEQSEKYEDLAQEIAHL 235

Query: 159 RSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEE---- 214
           R+ LE A+  L   + +   +    FE+ EQ++ Q    E   +A   + +    +    
Sbjct: 236 RNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPL 295

Query: 215 -LKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDK 273
            L  NL+D  +    + +E +    QL +  + +R+ +L   L KLA   E +K      
Sbjct: 296 LLIPNLLD--STKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKE----I 349

Query: 274 ETELQNISEENEMLKLEISKRELDT-PNMNSNLAAEVEAARSAEKEALMK-LGLLMEEAD 331
             EL  I +       EI  R   +       L  +V+      K  L+K L  L EE  
Sbjct: 350 AAELAEIDKPATT-DSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELA 408

Query: 332 KSNRRAARMA--EQLEAAQSANCEAEAELRRLKVQSDQW-RKAAEAAASMLSTGNNGK 386
           + +++ + +   EQ+        EA+ EL R + + ++  R+      ++ +      
Sbjct: 409 EVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 56/295 (18%), Positives = 109/295 (36%), Gaps = 20/295 (6%)

Query: 7   AAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETA- 65
               +   S  L LQ L G L+           +L E +E   +A+   R+ L  LE   
Sbjct: 252 QEDFEQLLSLELRLQHLHGELVADEE-------RLAEEQEERQEAKNRLRQQLRTLEDQL 304

Query: 66  KLSVEALRAEGMKAIEAYSSIASELER-SRTRINLLEGLVSKLEADTSNAN--RNLSQNC 122
           K + + L  E   A    ++  SELE     +    +  + +L+AD       R+  +  
Sbjct: 305 KEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRSELEEV 364

Query: 123 SGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKS 182
               D    +      ++ K+ E     +K ++ +           + E + +    I+ 
Sbjct: 365 EARLDA---LTGKHQDVQRKY-ERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEE 420

Query: 183 AFEQLE-QIKHQSGLREVELEAELQKAKSDIEELKANL----MDKETELQGISEENEGLH 237
             + LE Q++ Q    ++E   E  + +  +  LK  L       E   Q    +     
Sbjct: 421 DLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEK 480

Query: 238 MQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS 292
            Q ++        QL ++LR+L +  ++    L   E  L  + +  + L+L++S
Sbjct: 481 AQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQLS 535

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 34/229 (14%), Positives = 92/229 (40%), Gaps = 18/229 (7%)

Query: 19  ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK 78
           ++  L+  +      +   + +L +++E   + +A   + L ++E  +  +E  R    K
Sbjct: 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354

Query: 79  AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDT 138
             E Y+ +  ELE  R  +  ++   ++   +  +    L +      +L +++   Q+ 
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414

Query: 139 MESKH-----LEEELSSLKSEVGQLRSALE--IAETKLNEGQIQSTVKIKSAFEQ----- 186
           ++        L   ++ +++++ +L    E    E K  E +++      S +EQ     
Sbjct: 415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474

Query: 187 ------LEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGI 229
                 +E+   +      E EA+ + ++  +   +A     +  +QG+
Sbjct: 475 KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGV 523

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 63/326 (19%), Positives = 128/326 (39%), Gaps = 29/326 (8%)

Query: 48  ETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKL 107
               + LA  T+                 ++A+ A   +A E+E+ +     L  L  +L
Sbjct: 206 AIAEEHLADGTVPPKSRLNPQDVEHWIADIQALRAIQKVAPEIEKLQEDFEQLLSLELRL 265

Query: 108 E---ADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEI 164
           +    +       L++      +   ++++   T+E + L+E    L  E+    + L  
Sbjct: 266 QHLHGELVADEERLAEEQEERQEAKNRLRQQLRTLEDQ-LKEARDELNQELSAANAKLAA 324

Query: 165 AETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKET 224
             ++L   + Q      +  EQL+       L  +  E E  +A+ D    K   + ++ 
Sbjct: 325 DRSELELLEDQKGAFEDADIEQLQA--DLDQLPSIRSELEEVEARLDALTGKHQDVQRKY 382

Query: 225 E--LQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN-IS 281
           E   Q I E+ E            +   + N  L  + +  +  KA + +    L++ + 
Sbjct: 383 ERLKQKIKEQLE------------RDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLR 430

Query: 282 EENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMA 341
           ++ E  KLE ++ E +       L   +++A +A  E L +L    E  D++  +A    
Sbjct: 431 QQLEAGKLEFNEEEYELELRLGRLKQRLDSA-TATPEELEQL----EINDEALEKAQEEQ 485

Query: 342 EQLEAAQSANCEAEAELRRLKVQSDQ 367
           EQ EA        ++ELR+L+ + D+
Sbjct: 486 EQAEANVEQ---LQSELRQLRKRRDE 508

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	438
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.47
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.44
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.41
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.32
PRK02224	880	chromosome segregation protein; Provisional	99.32
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.31
PRK02224	880	chromosome segregation protein; Provisional	99.21
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.2
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.94
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.91
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.85
PRK03918	880	chromosome segregation protein; Provisional	98.83
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.81
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.78
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.74
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.73
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.71
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.7
PHA02562	562	46 endonuclease subunit; Provisional	98.64
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.61
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.58
PRK01156	895	chromosome segregation protein; Provisional	98.51
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.48
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.46
PRK01156	895	chromosome segregation protein; Provisional	98.44
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.44
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.39
PRK04863	1486	mukB cell division protein MukB; Provisional	98.39
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.38
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.36
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.34
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.31
PHA02562	562	46 endonuclease subunit; Provisional	98.3
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.3
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.24
PRK11637	428	AmiB activator; Provisional	98.23
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.22
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.21
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.16
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	98.1
PRK11637	428	AmiB activator; Provisional	98.09
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.08
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.06
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.99
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.95
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.92
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.88
PRK04778	569	septation ring formation regulator EzrA; Provision	97.86
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.83
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.81
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.77
PRK04778	569	septation ring formation regulator EzrA; Provision	97.72
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.7
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.67
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.67
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.63
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.58
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.54
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.51
PRK04863	1486	mukB cell division protein MukB; Provisional	97.5
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.49
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.46
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.37
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.37
PF13514	1111	AAA_27: AAA domain	97.34
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	97.31
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.28
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.25
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.24
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.24
PRK09039	343	hypothetical protein; Validated	97.22
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.15
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.09
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.09
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.08
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	97.07
COG4942	420	Membrane-bound metallopeptidase [Cell division and	97.06
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.98
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.88
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.77
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.71
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	96.69
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.69
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.67
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.66
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.65
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.62
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.62
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.57
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	96.57
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.43
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.39
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.37
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.37
PRK11281	1113	hypothetical protein; Provisional	96.25
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.22
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	96.22
PRK09039	343	hypothetical protein; Validated	96.21
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.14
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.05
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	95.99
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.94
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.94
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	95.93
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.89
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.87
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	95.87
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.85
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.8
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.79
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.78
PLN02939	977	transferase, transferring glycosyl groups	95.78
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.71
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	95.71
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	95.59
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.56
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.54
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	95.53
KOG1003	205	consensus Actin filament-coating protein tropomyos	95.49
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	95.37
PRK10929	1109	putative mechanosensitive channel protein; Provisi	95.32
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	95.32
KOG4673	961	consensus Transcription factor TMF, TATA element m	95.26
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.98
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	94.92
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.89
PF13514	1111	AAA_27: AAA domain	94.85
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	94.82
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.72
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	94.65
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.65
COG4372	499	Uncharacterized protein conserved in bacteria with	94.56
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.56
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	94.43
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.41
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	94.37
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	94.29
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.27
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.24
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	94.21
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	94.07
KOG0979	1072	consensus Structural maintenance of chromosome pro	93.99
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	93.94
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	93.92
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	93.89
KOG0963	629	consensus Transcription factor/CCAAT displacement	93.7
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	93.7
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	93.64
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	93.64
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	93.63
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.56
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.52
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	93.4
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	93.36
PRK10246	1047	exonuclease subunit SbcC; Provisional	93.36
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.33
KOG0979	1072	consensus Structural maintenance of chromosome pro	93.26
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	93.26
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	93.11
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	93.1
PRK10698	222	phage shock protein PspA; Provisional	93.05
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.74
COG2433	652	Uncharacterized conserved protein [Function unknow	92.65
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	92.62
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	92.53
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	92.38
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.3
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	91.95
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.81
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	91.8
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	91.75
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	91.6
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	91.38
KOG4673	961	consensus Transcription factor TMF, TATA element m	91.1
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.89
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.88
PRK10698	222	phage shock protein PspA; Provisional	90.85
COG4477	570	EzrA Negative regulator of septation ring formatio	90.8
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	90.8
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	90.62
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	90.34
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.34
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	89.98
COG4372	499	Uncharacterized protein conserved in bacteria with	89.98
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	89.95
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	89.94
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.94
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	89.8
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	89.42
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	89.41
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	89.38
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.05
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	89.01
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	88.95
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	88.94
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.91
COG5185	622	HEC1 Protein involved in chromosome segregation, i	88.89
PF13166	712	AAA_13: AAA domain	88.87
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	88.56
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.54
COG4026	290	Uncharacterized protein containing TOPRIM domain,	88.44
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	88.4
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	88.24
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	88.23
PF10186	302	Atg14: UV radiation resistance protein and autopha	88.18
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	88.03
PRK11281	1113	hypothetical protein; Provisional	87.67
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	87.62
COG4026	290	Uncharacterized protein containing TOPRIM domain,	87.48
COG2433	652	Uncharacterized conserved protein [Function unknow	87.42
PRK10884	206	SH3 domain-containing protein; Provisional	87.31
PRK10246	1047	exonuclease subunit SbcC; Provisional	87.26
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.24
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	86.74
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	86.49
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	85.7
KOG4302	660	consensus Microtubule-associated protein essential	85.62
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	85.46
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	85.29
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	84.75
PRK10884	206	SH3 domain-containing protein; Provisional	84.67
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	84.6
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	84.47
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.39
COG4477	570	EzrA Negative regulator of septation ring formatio	84.09
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	83.88
KOG1937	521	consensus Uncharacterized conserved protein [Funct	83.84
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	83.78
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	83.66
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	83.65
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	83.65
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	83.12
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	82.89
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	82.79
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	82.08
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	82.04
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	81.92
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	81.76
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	81.7
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	81.66
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	81.59
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	81.47
KOG0288	459	consensus WD40 repeat protein TipD [General functi	81.29
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	81.23
PRK09343	121	prefoldin subunit beta; Provisional	81.2
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	81.03
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	80.64
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	80.24
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	80.1

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.47  E-value=2.7e-09  Score=121.91  Aligned_cols=327  Identities=19%  Similarity=0.227  Sum_probs=148.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQ-------LETAKLSVEALRAEGMKAIEAYSS   85 (438)
Q Consensus        13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~q-------LE~ae~~Ie~le~ei~elee~~~s   85 (438)
                      ...+..++..+...+..+...+..+...+..+..++..+...+..+..+       +..+...+..+...+..+...+..
T Consensus       676 l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~  755 (1164)
T TIGR02169       676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN  755 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555554444444333333       333344444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHH
Q 013685           86 IASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIA  165 (438)
Q Consensus        86 l~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~a  165 (438)
                      +..++......+..+...+..+..++..+...+.          .. .-......+..++.++..++.++..++..+..+
T Consensus       756 ~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~----------~~-~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l  824 (1164)
T TIGR02169       756 VKSELKELEARIEELEEDLHKLEEALNDLEARLS----------HS-RIPEIQAELSKLEEEVSRIEARLREIEQKLNRL  824 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555554444331000          00 000012234455555555555555555555555


Q ss_pred             HHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhh
Q 013685          166 ETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLM  245 (438)
Q Consensus       166 E~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~  245 (438)
                      ..+++....+.. .+...+..+..........+..+...+..+...+..++..+.++..++..+..+...+..++.    
T Consensus       825 ~~~~~~l~~e~~-~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~----  899 (1164)
T TIGR02169       825 TLEKEYLEKEIQ-ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR----  899 (1164)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            544444333222 223333333333333333333333334444444444444444444444444433333333333    


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhc-cccC-cccchhHHHHHHHHHHHHHHHHHHh
Q 013685          246 CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKR-ELDT-PNMNSNLAAEVEAARSAEKEALMKL  323 (438)
Q Consensus       246 ~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~-~~~~-~~~~~e~~~~~~~a~~~~~~~~~k~  323 (438)
                           .+..++..+...+..+...+..+...+..+...+..+...+... .... ..-..++...+....    .-+.++
T Consensus       900 -----~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~----~~i~~l  970 (1164)
T TIGR02169       900 -----ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVE----EEIRAL  970 (1164)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHHHHHHHHHH----HHHHHc
Confidence                 33444444444444444444444444443333333333222110 0000 000112222222221    123455


Q ss_pred             hhhH----HHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhc
Q 013685          324 GLLM----EEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQ  364 (438)
Q Consensus       324 ~~~~----e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq  364 (438)
                      |.+.    ++.+.-..+-.-+..|++-...+...+..-+.+|+-+
T Consensus       971 ~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~ 1015 (1164)
T TIGR02169       971 EPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015 (1164)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555    6777777888888899999999999999988888744

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.44  E-value=2.6e-09  Score=122.09  Aligned_cols=139  Identities=15%  Similarity=0.209  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Q 013685           14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE------------------TLLQLETAKLSVEALRAE   75 (438)
Q Consensus        14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE------------------~~~qLE~ae~~Ie~le~e   75 (438)
                      ..+...+..+..+|.++...+.+++.++..+..+...+..|.+.                  ...++..+...+..+...
T Consensus       166 ~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (1164)
T TIGR02169       166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQ  245 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666666666666666666666666666666666666642                  122233333333444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHH
Q 013685           76 GMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEV  155 (438)
Q Consensus        76 i~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI  155 (438)
                      +..+...+..+..++......+..++..+..++..+..+.                      +.++..+..++..++..+
T Consensus       246 l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~~~~~~~~~~~  303 (1164)
T TIGR02169       246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG----------------------EEEQLRVKEKIGELEAEI  303 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------chhhHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444333322                      244555666666666666


Q ss_pred             HHHHHHHHHHHHhhhhhhh
Q 013685          156 GQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       156 ~~Les~Ie~aE~riqEe~~  174 (438)
                      ..+...+..+..++.....
T Consensus       304 ~~~~~~~~~~~~~l~~l~~  322 (1164)
T TIGR02169       304 ASLERSIAEKERELEDAEE  322 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666666555544433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.41  E-value=5.5e-09  Score=121.58  Aligned_cols=308  Identities=25%  Similarity=0.317  Sum_probs=174.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE-----------TLLQLETAKLSVEALRAEGMKAIE   81 (438)
Q Consensus        13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE-----------~~~qLE~ae~~Ie~le~ei~elee   81 (438)
                      -+.+...|+.+.+++.++...+.++..++..|+.+..+|..|..-           +..++..+...+..+..++..+..
T Consensus       174 ~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~  253 (1163)
T COG1196         174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEE  253 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999922           566677777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHH
Q 013685           82 AYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSA  161 (438)
Q Consensus        82 ~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~  161 (438)
                      .+..+...+.....+|..+...+.++...+....                       .+...++..+.++..+|..++.+
T Consensus       254 ~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~-----------------------~~~~~~~~~~~~le~~~~~~~~~  310 (1163)
T COG1196         254 ELEELQEELEEAEKEIEELKSELEELREELEELQ-----------------------EELLELKEEIEELEGEISLLRER  310 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777666653                       35566677777888888888888


Q ss_pred             HHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhc---HHHHHHHHHHHHHHHHHHHHhhc----cHHHHhhhhHHhhH
Q 013685          162 LEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLR---EVELEAELQKAKSDIEELKANLM----DKETELQGISEENE  234 (438)
Q Consensus       162 Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~r---i~Ele~eie~~~~eLeELka~l~----d~E~ELq~L~eEre  234 (438)
                      +..+..++++...    .+......++..+......   ..++...+..+...+.++.....    +.++.+..++++-.
T Consensus       311 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  386 (1163)
T COG1196         311 LEELENELEELEE----RLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA  386 (1163)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            8777777665544    2222222222222222221   33333333333333333333333    33334444444444


Q ss_pred             HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHH
Q 013685          235 GLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARS  314 (438)
Q Consensus       235 ~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~  314 (438)
                      .+..++.         .+..++..+...++.+...+..+...+..+..++..+..++.....+    .++....+.....
T Consensus       387 ~~~~~~~---------~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~  453 (1163)
T COG1196         387 ELEAELA---------EIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE----LEELNEELEELEE  453 (1163)
T ss_pred             HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHH
Confidence            4443333         33333333333333333333333333333333333333333321111    2233333333333


Q ss_pred             HHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 013685          315 AEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRR  360 (438)
Q Consensus       315 ~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~r  360 (438)
                      .-.+....+..+..+...-...-.++...|...+.....+++..+.
T Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  499 (1163)
T COG1196         454 QLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA  499 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3344444444444444444444455555555555555555555443

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.32  E-value=6e-08  Score=113.04  Aligned_cols=194  Identities=26%  Similarity=0.366  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHH
Q 013685          179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK  258 (438)
Q Consensus       179 elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~  258 (438)
                      .+...+..++.....+...+.+++..+..+...+.+++.....++..|..+..+...|...+.         ++...+..
T Consensus       832 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~---------~~~~~~~~  902 (1163)
T COG1196         832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR---------ELESELAE  902 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence            455555566666667777777777778888888888888888888888888888888888888         88888888


Q ss_pred             HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhH----HHHHHhh
Q 013685          259 LAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLM----EEADKSN  334 (438)
Q Consensus       259 ~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~----e~~~~~~  334 (438)
                      +...++.+...++.+......+...+..+-..+........  ..++...+...+    ..+..||.|.    ++.+...
T Consensus       903 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~le----~~i~~lg~VN~~Aiee~e~~~  976 (1163)
T COG1196         903 LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTL--ETELEREIERLE----EEIEALGPVNLRAIEEYEEVE  976 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccch--hHHHHHHHHHHH----HHHHhccCCChhHHHHHHHHH
Confidence            88888888888888877777777777666666654433211  113444443333    2256677665    6667778


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhhhch-----HHHHHHHHHHHHH---hccCCCCcc
Q 013685          335 RRAARMAEQLEAAQSANCEAEAELRRLKVQS-----DQWRKAAEAAASM---LSTGNNGKC  387 (438)
Q Consensus       335 ~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~-----~qwrkaae~aaa~---l~~g~~g~~  387 (438)
                      .+-..+..++.....|+..+..-+..+.-..     +-|.+...-=-.|   |.+|++|.+
T Consensus       977 ~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L~~GG~a~L 1037 (1163)
T COG1196         977 ERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAEL 1037 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEE
Confidence            8888899999988888888877665554332     3344444333333   445666753

>PRK02224 chromosome segregation protein; Provisional

Probab=99.32  E-value=6.1e-08  Score=109.29  Aligned_cols=105  Identities=15%  Similarity=0.079  Sum_probs=57.8

Q ss_pred             HhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCc-ccch
Q 013685          225 ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTP-NMNS  303 (438)
Q Consensus       225 ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~-~~~~  303 (438)
                      ++..+..+...|..++..-.   .-.++..++..+...+.+++..+..++.....+..++..++..+...+.... ...+
T Consensus       573 ~~~~~~~~~~~l~~~~~~le---~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e  649 (880)
T PRK02224        573 EVAELNSKLAELKERIESLE---RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE  649 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            44444444444444444111   1236666777777777777777777777777888888888888887654311 2233


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 013685          304 NLAAEVEAARSAEKEALMKLGLLMEEADK  332 (438)
Q Consensus       304 e~~~~~~~a~~~~~~~~~k~~~~~e~~~~  332 (438)
                      .+......+.......-.+++.+......
T Consensus       650 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~  678 (880)
T PRK02224        650 EAREDKERAEEYLEQVEEKLDELREERDD  678 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444333443444444443333

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.31  E-value=5e-08  Score=111.18  Aligned_cols=45  Identities=11%  Similarity=0.085  Sum_probs=40.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE   57 (438)
Q Consensus        13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE   57 (438)
                      ...++..+.....+|.++...+.++..++..+..+..+|..|.+.
T Consensus       167 ~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~  211 (1179)
T TIGR02168       167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEK  211 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677899999999999999999999999999999999998854

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.21  E-value=4.9e-07  Score=102.03  Aligned_cols=44  Identities=20%  Similarity=0.216  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHHhc
Q 013685          337 AARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLS  380 (438)
Q Consensus       337 ~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~l~  380 (438)
                      .....+++...+.-...+..++..|+....+|.++|+.+-+-+.
T Consensus       525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~  568 (880)
T PRK02224        525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE  568 (880)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            44455777778888889999999999999999998887655443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.20  E-value=1.9e-07  Score=106.55  Aligned_cols=47  Identities=13%  Similarity=0.142  Sum_probs=25.8

Q ss_pred             HHHhhhhHHHHHHhh----HHHHHHHHHHHHHHHhhHHHHHHHhhhhhchH
Q 013685          320 LMKLGLLMEEADKSN----RRAARMAEQLEAAQSANCEAEAELRRLKVQSD  366 (438)
Q Consensus       320 ~~k~~~~~e~~~~~~----~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~  366 (438)
                      +..||---+|...-+    .+-.-+..|+.--..+...|+.-+..+.-.+.
T Consensus       974 i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~ 1024 (1179)
T TIGR02168       974 LKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024 (1179)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444554434    55556667776666666666665555544433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.94  E-value=9.9e-06  Score=97.43  Aligned_cols=318  Identities=19%  Similarity=0.249  Sum_probs=167.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSR   94 (438)
Q Consensus        15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~   94 (438)
                      .+..++..+.+.+......++++.+++.....++.+.+..++.....+..+...|..+.+.+.++.+.++.-+....+.+
T Consensus      1045 kle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e 1124 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE 1124 (1930)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhh---hcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685           95 TRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIK---ENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE  171 (438)
Q Consensus        95 ~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~---~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE  171 (438)
                      .....|..++..|..++...+.            ++...   ......++..|.+.++   .+....+..+.......+.
T Consensus      1125 k~r~dL~~ele~l~~~Lee~~~------------~t~~q~e~~~k~e~e~~~l~~~le---ee~~~~e~~~~~lr~~~~~ 1189 (1930)
T KOG0161|consen 1125 RQRRDLSEELEELKEELEEQGG------------TTAAQLELNKKREAEVQKLRRDLE---EETLDHEAQIEELRKKHAD 1189 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh------------hHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHH
Confidence            6666666666666666655531            00000   0011111111111111   1111111222222222222


Q ss_pred             hhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccH-------HHHhhhhHHhhHHHHHHhhhhh
Q 013685          172 GQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDK-------ETELQGISEENEGLHMQLDKNL  244 (438)
Q Consensus       172 e~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~-------E~ELq~L~eEre~L~~ei~~~~  244 (438)
                      ..    .++...++++...|......-..++.++..+...+.-+-..-.+.       |..|.+++..-+.+..-+..  
T Consensus      1190 ~~----~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~-- 1263 (1930)
T KOG0161|consen 1190 SL----AELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRND-- 1263 (1930)
T ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            11    355555555555555555555555555555555544333333332       23333333333333322210  


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhh
Q 013685          245 MCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLG  324 (438)
Q Consensus       245 ~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~  324 (438)
                      -..+...+..+...+...++.....+..+-.....+..+++.++.++..          +     .-++.+-..+     
T Consensus      1264 l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~----------e-----~r~k~~l~~~----- 1323 (1930)
T KOG0161|consen 1264 LTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEE----------E-----TREKSALENA----- 1323 (1930)
T ss_pred             HHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-----HHHHHHHHHH-----
Confidence            0112234555555555555555555555555555555555555555541          1     1111111111     


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 013685          325 LLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASM  378 (438)
Q Consensus       325 ~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~  378 (438)
                           +..-......+.+|++-.+.++..|.-.+.+..+|+.|||+=.+.-..-
T Consensus      1324 -----l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~ 1372 (1930)
T KOG0161|consen 1324 -----LRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQ 1372 (1930)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1222344778999999999999999999999999999999988766554

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.91  E-value=4.6e-05  Score=82.35  Aligned_cols=96  Identities=20%  Similarity=0.223  Sum_probs=61.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEA-----LRAEGMKAIEAYSSI   86 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~-----le~ei~elee~~~sl   86 (438)
                      +...++.+.-.+-.+|..+-..|++++.+|.....+..++....+-...++..++..+..     ...++....+.|...
T Consensus        49 ~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~  128 (522)
T PF05701_consen   49 QLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASA  128 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Confidence            455666677777788888888888888888888877777766665444444444443333     445555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 013685           87 ASELERSRTRINLLEGLVSKL  107 (438)
Q Consensus        87 ~~ELee~~~eI~~LE~ei~kL  107 (438)
                      ..+|+..+.++..+..++..+
T Consensus       129 ~~eL~~~k~EL~~lr~e~~~~  149 (522)
T PF05701_consen  129 VAELDSVKQELEKLRQELASA  149 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666555555544

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.85  E-value=4.8e-05  Score=91.70  Aligned_cols=323  Identities=22%  Similarity=0.255  Sum_probs=181.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE   91 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELe   91 (438)
                      .+..++..+..+......++..+.++..++.+..+.-........+....+..++..|+.++..+.+++.++......+.
T Consensus       888 ~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~  967 (1930)
T KOG0161|consen  888 NLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLK  967 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666666666666777777777776666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685           92 RSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE  171 (438)
Q Consensus        92 e~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE  171 (438)
                      .+..+|..+++.+++|..+-..++..                -....+.+.....++.++..-...|+..|++.+..+..
T Consensus       968 ~l~~e~~~~~e~~~kL~kekk~lEe~----------------~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~ 1031 (1930)
T KOG0161|consen  968 NLEEEINSLDENISKLSKEKKELEER----------------IRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLER 1031 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666543333310                01112334444455555555555555555555555544


Q ss_pred             hhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhh
Q 013685          172 GQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQ  251 (438)
Q Consensus       172 e~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~e  251 (438)
                      ...        ..-.++..+-.+......+...+..++...++|...++.++.||..+..+.+.+...+.+-  ...-.+
T Consensus      1032 e~~--------~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l--~k~i~e 1101 (1930)
T KOG0161|consen 1032 EKR--------IRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQL--QKQIKE 1101 (1930)
T ss_pred             HHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHH
Confidence            333        2222333333344444555555666666677777777777777777777777766666511  111124


Q ss_pred             hHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHH----------HHHHH
Q 013685          252 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAE----------KEALM  321 (438)
Q Consensus       252 l~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~----------~~~~~  321 (438)
                      +...+..+..+++.-++...-.+..+..|..+++.|+.++..-       .....+.++.-+..+          ++..+
T Consensus      1102 L~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~-------~~~t~~q~e~~~k~e~e~~~l~~~leee~~ 1174 (1930)
T KOG0161|consen 1102 LEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ-------GGTTAAQLELNKKREAEVQKLRRDLEEETL 1174 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555666666666655533       112222222222222          22222


Q ss_pred             HhhhhHHHH-HHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHH
Q 013685          322 KLGLLMEEA-DKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQ  367 (438)
Q Consensus       322 k~~~~~e~~-~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~q  367 (438)
                      -.....+.+ .+.+...+.+..|++--+..+..++-+-+.|.-..++
T Consensus      1175 ~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~ 1221 (1930)
T KOG0161|consen 1175 DHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIAD 1221 (1930)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222223333 2336778889999999888888887777766555444

>PRK03918 chromosome segregation protein; Provisional

Probab=98.83  E-value=0.00012  Score=82.56  Aligned_cols=45  Identities=20%  Similarity=0.215  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           71 ALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        71 ~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      .+...+.++......+..++..+..++..+...+..|+..+..+.
T Consensus       388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~  432 (880)
T PRK03918        388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK  432 (880)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555666667777777777777777777777666555

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.81  E-value=0.00027  Score=79.50  Aligned_cols=298  Identities=18%  Similarity=0.237  Sum_probs=194.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q 013685           13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALAR-------------ETLLQLETAKLSVEALRAEGMKA   79 (438)
Q Consensus        13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~e-------------E~~~qLE~ae~~Ie~le~ei~el   79 (438)
                      -+.+..++..++..+..+...|+.++..+....+++...+..+.             ....++..++..+..++..+...
T Consensus       123 ~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~  202 (775)
T PF10174_consen  123 RERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERK  202 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777777778888888888888888888777777542             25667778888888888777777


Q ss_pred             HHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccccc
Q 013685           80 IEAYS--------------------SIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTM  139 (438)
Q Consensus        80 ee~~~--------------------sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~  139 (438)
                      ...+.                    .+..-|+...+.|.+++.-|..++.+|..+....+-.+. + .+.....-....+
T Consensus       203 e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~-~-r~~~~k~le~~~s  280 (775)
T PF10174_consen  203 EKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEA-D-RDRLDKQLEVYKS  280 (775)
T ss_pred             HHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-c-hHHHHHHHHHHHh
Confidence            77663                    345567778889999999999999999999742111111 0 0000001111233


Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685          140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL  219 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l  219 (438)
                      ....++..++.++.++++-.+-|..+-+++........ +.+.-|+-+..--....++..-|...++.+...|++....+
T Consensus       281 ~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~-d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l  359 (775)
T PF10174_consen  281 HSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDS-DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL  359 (775)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            44445555666666666666666655566554433222 44666666666666666777777777777777777777777


Q ss_pred             ccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCc
Q 013685          220 MDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTP  299 (438)
Q Consensus       220 ~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~  299 (438)
                      -.+..-+..+.++...+..+|.         .++..++.....|..|..++..++..+..=..++..++.-+.. .++..
T Consensus       360 ~kk~~~~~~~qeE~~~~~~Ei~---------~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~  429 (775)
T PF10174_consen  360 EKKQAQIEKLQEEKSRLQGEIE---------DLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSS  429 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccc
Confidence            7777778888888888888887         7888888888888888888777777776555555566666654 44433


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhh
Q 013685          300 NMNSNLAAEVEAARSAEKEALMKLG  324 (438)
Q Consensus       300 ~~~~e~~~~~~~a~~~~~~~~~k~~  324 (438)
                      + .+.+...++.|-..-.-...+|.
T Consensus       430 ~-~~~~~~~lEea~~eker~~e~l~  453 (775)
T PF10174_consen  430 N-EDEALETLEEALREKERLQERLE  453 (775)
T ss_pred             c-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 24555666666554444444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.78  E-value=8.4e-05  Score=83.52  Aligned_cols=331  Identities=21%  Similarity=0.277  Sum_probs=176.9

Q ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685            7 AAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSI   86 (438)
Q Consensus         7 ~~~~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl   86 (438)
                      .+.-+|++.+.++++.|+-+|++....+.....++..+..+.+.....++.+...++.....|..|...|..+++.+..-
T Consensus       332 ~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek  411 (775)
T PF10174_consen  332 RAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK  411 (775)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777777777777777777777777777777777777766666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHH-------------HHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHH
Q 013685           87 ASELERSRTRIN-------------LLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS  153 (438)
Q Consensus        87 ~~ELee~~~eI~-------------~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~  153 (438)
                      ...|+..+.++.             .|+.-+.+.+.-+..+.                   ..-...-.+...+++..+.
T Consensus       412 d~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~-------------------e~r~~~e~e~~Eele~~~~  472 (775)
T PF10174_consen  412 DRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLE-------------------EQRERAEKERQEELETYQK  472 (775)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Confidence            665655555555             12222222222222221                   0111122455667777777


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhh----
Q 013685          154 EVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGI----  229 (438)
Q Consensus       154 EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L----  229 (438)
                      ++..++..+..+..++.+-.+    .+-..-+.+...-+..    ......|+.+.-.++..+...-+++..|..+    
T Consensus       473 e~~~lk~~~~~LQ~eLsEk~~----~l~~~kee~s~l~s~~----~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~  544 (775)
T PF10174_consen  473 ELKELKAKLESLQKELSEKEL----QLEDAKEEASKLASSQ----EKKDSEIERLEIELEKKREKHEKLEKQLEKLRANA  544 (775)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH----HHHHhhhHHHHHhhcc----chhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCH
Confidence            777777777777777777665    3333333332222211    1122223444444444444444444444332    


Q ss_pred             --HHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHH
Q 013685          230 --SEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAA  307 (438)
Q Consensus       230 --~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~  307 (438)
                        ......|...+.         ..+.+....+..|++|-..|-..+........+|..|.+++.+...+..+...-   
T Consensus       545 e~~~r~~~Le~ev~---------~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~~~~~~---  612 (775)
T PF10174_consen  545 ELRDRIQQLEQEVT---------RYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLAKQQET---  612 (775)
T ss_pred             hhcchHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhhh---
Confidence              222222332222         455566677778888888888888888888888888888876655543321111   


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHh-----hHHHHHHHHH-HHHH-------HHhhHHHHHHHhhhhhchHHHHHHHHH
Q 013685          308 EVEAARSAEKEALMKLGLLMEEADKS-----NRRAARMAEQ-LEAA-------QSANCEAEAELRRLKVQSDQWRKAAEA  374 (438)
Q Consensus       308 ~~~~a~~~~~~~~~k~~~~~e~~~~~-----~~~~~~~~e~-l~a~-------~~a~~~~eae~~rl~vq~~qwrkaae~  374 (438)
                       .++-+..  ...-+-..+.+++.+.     ..+..++..+ +.+.       +.-...|.+.|.++|+..|+-+-=..-
T Consensus       613 -~~~~k~~--~~~~~~~elleea~Ree~~~t~e~~l~~s~q~~~~~~~~~~~~e~qleeL~~~l~k~~~Eld~l~~qL~s  689 (775)
T PF10174_consen  613 -VEATKIE--ENKRKRAELLEEALREEVSITEERELAQSQQKLAQQEAQSSHLEKQLEELEAALEKLRQELDQLKAQLES  689 (775)
T ss_pred             -hhhhhhH--HHHHhhhHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111111  1112223344555442     1222222222 2222       223466777788888777777743333


Q ss_pred             HHHHh
Q 013685          375 AASML  379 (438)
Q Consensus       375 aaa~l  379 (438)
                      .--+|
T Consensus       690 sq~~L  694 (775)
T PF10174_consen  690 SQQSL  694 (775)
T ss_pred             HHHHH
Confidence            33344

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.74  E-value=0.00018  Score=77.91  Aligned_cols=47  Identities=28%  Similarity=0.397  Sum_probs=30.4

Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          195 GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       195 ~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      ......+...|.....+|++.+..+-....++..|+...+.|+.+|.
T Consensus       273 ~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe  319 (522)
T PF05701_consen  273 KEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE  319 (522)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556667777777777777766666666666666666666665

Several sequences in this family are described as being myosin heavy chain-like.

>TIGR00606 rad50 rad50

Probab=98.73  E-value=7.9e-05  Score=88.32  Aligned_cols=43  Identities=12%  Similarity=0.152  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685          198 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL  240 (438)
Q Consensus       198 i~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei  240 (438)
                      ...++..|..+...+..+...+.++..+|..+..+...+..++
T Consensus       883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~  925 (1311)
T TIGR00606       883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK  925 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            3444555555555555555555555555555555544444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=98.71  E-value=0.00021  Score=84.76  Aligned_cols=42  Identities=24%  Similarity=0.256  Sum_probs=23.5

Q ss_pred             hhHHHHHHHHHHHHHHHHchhhH--HHHHHHHHHHHHHHHHHHh
Q 013685          251 QLNNDLRKLAQAVEDLKANLMDK--ETELQNISEENEMLKLEIS  292 (438)
Q Consensus       251 el~~el~~~~~~Ie~Lka~L~~l--e~~l~~L~eEieeLKsEI~  292 (438)
                      .++.++..+......+.-+|..+  ...+..+..+|..|..+++
T Consensus      1002 ~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~ 1045 (1311)
T TIGR00606      1002 LMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG 1045 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555555555555555555555  5555555555555555555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.70  E-value=1.1e-05  Score=78.57  Aligned_cols=19  Identities=21%  Similarity=0.279  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 013685          152 KSEVGQLRSALEIAETKLN  170 (438)
Q Consensus       152 k~EI~~Les~Ie~aE~riq  170 (438)
                      ...+.......+.++.+|.
T Consensus        98 E~~l~ea~~~~ee~e~k~~  116 (237)
T PF00261_consen   98 EQQLKEAKRRAEEAERKYE  116 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.64  E-value=0.0001  Score=79.04  Aligned_cols=173  Identities=17%  Similarity=0.254  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccccCCCCCCCcchhhhh
Q 013685           56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR-NLSQNCSGDYDLGQKIKE  134 (438)
Q Consensus        56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~-~~~~~~~~~~~~~~~~~~  134 (438)
                      +.+..+...++..+..++..+..+...+..+...|..+...+..++..+..++..+.-... ..-..|+.++.+.     
T Consensus       223 ~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~-----  297 (562)
T PHA02562        223 DELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG-----  297 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc-----
Confidence            3344444444444445555554444444444455555666666666666666666554431 0112334443221     


Q ss_pred             cccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHH
Q 013685          135 NQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEE  214 (438)
Q Consensus       135 ~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeE  214 (438)
                         .+.+..|+..+..++.++..+...+..++...+. .    .++...+..+.+........+..+...+..++.+|+.
T Consensus       298 ---~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~----~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~  369 (562)
T PHA02562        298 ---PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-F----NEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE  369 (562)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               3455566666666666666666666655444432 1    2445555566666666666666677777777777777


Q ss_pred             HHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          215 LKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       215 Lka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      |.....+.+.+|..+..+...+..++.
T Consensus       370 l~~~~~~~~~~l~~l~~~l~~~~~~~~  396 (562)
T PHA02562        370 LQAEFVDNAEELAKLQDELDKIVKTKS  396 (562)
T ss_pred             HHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777776666665

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.61  E-value=0.00011  Score=73.39  Aligned_cols=190  Identities=18%  Similarity=0.221  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           30 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA  109 (438)
Q Consensus        30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~  109 (438)
                      ....|..++.++.++..+.+++...++.+...++.++..++........++..+..+...++........|+..|..|..
T Consensus        52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e  131 (312)
T PF00038_consen   52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE  131 (312)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence            34555566666666666666666666555555555555555555555555555555555555555555555555555555


Q ss_pred             HhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHH-hhHHHH-----HHHHHHHHHHHHhhhhhhhhcHHHHHHH
Q 013685          110 DTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELS-SLKSEV-----GQLRSALEIAETKLNEGQIQSTVKIKSA  183 (438)
Q Consensus       110 eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie-~lk~EI-----~~Les~Ie~aE~riqEe~~e~~~elr~a  183 (438)
                      +|.-+..                   .-..++..|...+. ..-.++     ..|...|...-..|...-.....++...
T Consensus       132 El~fl~~-------------------~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~  192 (312)
T PF00038_consen  132 ELEFLKQ-------------------NHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEW  192 (312)
T ss_dssp             HHHHHHH-------------------HHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh-------------------hhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhh
Confidence            4444331                   00111222222110 000000     1122222222222221111000111111


Q ss_pred             HHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          184 FEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       184 ~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                         ......++..........+...+.++.+++..+..+.++|..|...+..|...|.
T Consensus       193 ---y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~  247 (312)
T PF00038_consen  193 ---YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLR  247 (312)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence               1222334444445566666777777777777777777777777777777777776

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.58  E-value=7e-05  Score=73.01  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=19.6

Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685          140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~  174 (438)
                      .+.++...+..+..++.+.+.+++.++.++.++..
T Consensus       114 k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~  148 (237)
T PF00261_consen  114 KYEEVERKLKVLEQELERAEERAEAAESKIKELEE  148 (237)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Confidence            34445555556666666666666666555555444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK01156 chromosome segregation protein; Provisional

Probab=98.51  E-value=0.004  Score=71.10  Aligned_cols=30  Identities=17%  Similarity=0.304  Sum_probs=14.9

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685          141 SKHLEEELSSLKSEVGQLRSALEIAETKLN  170 (438)
Q Consensus       141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riq  170 (438)
                      +..++.+|..+..+|..|+..+..++.++.
T Consensus       471 i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~  500 (895)
T PRK01156        471 INHYNEKKSRLEEKIREIEIEVKDIDEKIV  500 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555544444433

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.48  E-value=0.00096  Score=67.21  Aligned_cols=93  Identities=22%  Similarity=0.295  Sum_probs=54.3

Q ss_pred             hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhh
Q 013685          193 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMD  272 (438)
Q Consensus       193 e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~  272 (438)
                      .....+.++.+++..++....+++..+..+-.+.|++..+--.+-.++.         +++.+.+.+-..+-.+......
T Consensus       155 e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~D---------e~Rkeade~he~~ve~~~~~~e  225 (294)
T COG1340         155 EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEAD---------ELRKEADELHEEFVELSKKIDE  225 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHH
Confidence            3444555556666666666666666666666666555555555555554         6666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q 013685          273 KETELQNISEENEMLKLEISKR  294 (438)
Q Consensus       273 le~~l~~L~eEieeLKsEI~~~  294 (438)
                      +...+..+..+|.++...|..+
T Consensus       226 ~~ee~~~~~~elre~~k~ik~l  247 (294)
T COG1340         226 LHEEFRNLQNELRELEKKIKAL  247 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666555555533

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.46  E-value=0.00072  Score=73.17  Aligned_cols=111  Identities=25%  Similarity=0.296  Sum_probs=75.6

Q ss_pred             HHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 013685          186 QLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVED  265 (438)
Q Consensus       186 ~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~  265 (438)
                      .+...+....+....|...++..+..|..|+..+-.++.-|++=+.+|..|..+|.+.-+|++     --+.+.+..+.+
T Consensus       347 ~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~-----vqlsE~~rel~E  421 (546)
T PF07888_consen  347 ELKEGRSQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNR-----VQLSENRRELQE  421 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHH
Confidence            334444444444455566667777888899999999999999999999999999984444332     255566666666


Q ss_pred             HHHchhhHHHHHHHHHHHHHHHHHHHhhccccCccc
Q 013685          266 LKANLMDKETELQNISEENEMLKLEISKRELDTPNM  301 (438)
Q Consensus       266 Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~  301 (438)
                      +++.|--...+-..+..+..+|..-|...+...+++
T Consensus       422 lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  422 LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777666666667777777777777776666544443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK01156 chromosome segregation protein; Provisional

Probab=98.44  E-value=0.0036  Score=71.43  Aligned_cols=19  Identities=16%  Similarity=0.380  Sum_probs=8.4

Q ss_pred             chHHHHHHHHhhHHHHHHH
Q 013685          140 ESKHLEEELSSLKSEVGQL  158 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~L  158 (438)
                      ++.+|..++..++.++..+
T Consensus       484 ~i~~l~~~~~~l~~~~~~~  502 (895)
T PRK01156        484 KIREIEIEVKDIDEKIVDL  502 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444433

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.44  E-value=0.0011  Score=73.09  Aligned_cols=274  Identities=24%  Similarity=0.286  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCC
Q 013685           45 KESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSG  124 (438)
Q Consensus        45 ~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~  124 (438)
                      .+.+.+++...+.....|.   .+...+...+..+-+....+..+......+|..|+..|.+|...+.....  +.|+.+
T Consensus         3 ~e~l~qlq~Erd~ya~~lk---~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~--~~~pa~   77 (617)
T PF15070_consen    3 MESLKQLQAERDQYAQQLK---EESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP--PEPPAG   77 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--cccccc
Confidence            3444555555555555444   45556777888888888999999999999999999999999988887663  333333


Q ss_pred             CCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHH
Q 013685          125 DYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAE  204 (438)
Q Consensus       125 ~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~e  204 (438)
                      +.            ..-..|..++..++.+++.|...+..--.. +              +.+.....+...++.+++..
T Consensus        78 ps------------e~E~~Lq~E~~~L~kElE~L~~qlqaqv~~-n--------------e~Ls~L~~EqEerL~ELE~~  130 (617)
T PF15070_consen   78 PS------------EVEQQLQAEAEHLRKELESLEEQLQAQVEN-N--------------EQLSRLNQEQEERLAELEEE  130 (617)
T ss_pred             ch------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHHH
Confidence            21            111345556666666665555555432211 1              11222222333333333333


Q ss_pred             HHHHHHHH------------------------HHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 013685          205 LQKAKSDI------------------------EELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLA  260 (438)
Q Consensus       205 ie~~~~eL------------------------eELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~  260 (438)
                      +..+....                        .+||..+.++..-+-.|..++-.|.+.+.-..-..+  +|...+..+.
T Consensus       131 le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~k--eL~~kl~~l~  208 (617)
T PF15070_consen  131 LERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKK--ELQKKLGELQ  208 (617)
T ss_pred             HHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH--HHHHHHHHHH
Confidence            33333332                        466777777777777788888777777663333444  8888889999


Q ss_pred             HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhh----hhHHHHH--Hhh
Q 013685          261 QAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLG----LLMEEAD--KSN  334 (438)
Q Consensus       261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~----~~~e~~~--~~~  334 (438)
                      ..+..++..+..+...+.+|..+.+.+-..+..|.+..            ..-+.+.+++-|--    +++..+-  .+.
T Consensus       209 ~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~------------q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q  276 (617)
T PF15070_consen  209 EKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAY------------QQLASEKEELHKQLLQQTQLMDRLQHEESQ  276 (617)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999886542            12234455555432    1222221  111


Q ss_pred             HHHH---------HHHHHHHHHHHhhHHHHHHHhhhhhc
Q 013685          335 RRAA---------RMAEQLEAAQSANCEAEAELRRLKVQ  364 (438)
Q Consensus       335 ~~~~---------~~~e~l~a~~~a~~~~eae~~rl~vq  364 (438)
                      .++.         .+.++|+|+-.-|..|.+.|.-+..-
T Consensus       277 ~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~  315 (617)
T PF15070_consen  277 GKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALP  315 (617)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence            1111         44578888888888888888765443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.39  E-value=0.00022  Score=77.10  Aligned_cols=253  Identities=17%  Similarity=0.217  Sum_probs=143.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS   93 (438)
Q Consensus        14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~   93 (438)
                      .....++..+..+|..+...+.+++.++.+..+.+..+...+......|-.+++++..+..++..++++...+..+...+
T Consensus       102 ~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl  181 (546)
T KOG0977|consen  102 DETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL  181 (546)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhH----HHHHHHHHHHHHHH-Hh
Q 013685           94 RTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLK----SEVGQLRSALEIAE-TK  168 (438)
Q Consensus        94 ~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk----~EI~~Les~Ie~aE-~r  168 (438)
                      ...|..+...+..=-.   ---                    .....+..|..+|.-++    .+|.++......-- ..
T Consensus       182 ~~~l~~~r~~ld~Etl---lr~--------------------d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~  238 (546)
T KOG0977|consen  182 REELARARKQLDDETL---LRV--------------------DLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTAD  238 (546)
T ss_pred             HHHHHHHHHHHHHHHH---HHH--------------------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccccc
Confidence            5555444332221110   000                    00112223333333333    44444333332111 00


Q ss_pred             h-----hhhhhhcHHHHHHHHHHHHHH-----HhhhhhcHHHHH--------------HHHHHHHHHHHHHHHhhccHHH
Q 013685          169 L-----NEGQIQSTVKIKSAFEQLEQI-----KHQSGLREVELE--------------AELQKAKSDIEELKANLMDKET  224 (438)
Q Consensus       169 i-----qEe~~e~~~elr~a~E~le~~-----K~e~~~ri~Ele--------------~eie~~~~eLeELka~l~d~E~  224 (438)
                      .     ++++. .-.+|+..|+..-+.     -.-+..+|.+..              .++..++..|..|++.+.++++
T Consensus       239 ~r~~F~~eL~~-Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~  317 (546)
T KOG0977|consen  239 NREYFKNELAL-AIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELES  317 (546)
T ss_pred             chHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccc
Confidence            0     11111 113555555554222     123555565555              8999999999999999999999


Q ss_pred             HhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013685          225 ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE  295 (438)
Q Consensus       225 ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~  295 (438)
                      ....|-...+.|+..+.....     --...|...+..|.+++-+...+-.+++.|..=.-.|..||..|-
T Consensus       318 ~n~~L~~~I~dL~~ql~e~~r-----~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YR  383 (546)
T KOG0977|consen  318 RNSALEKRIEDLEYQLDEDQR-----SFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYR  383 (546)
T ss_pred             cChhHHHHHHHHHhhhhhhhh-----hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHH
Confidence            999999999999988872211     345567777777888888878888888888777777888887765

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.39  E-value=0.0046  Score=74.34  Aligned_cols=102  Identities=10%  Similarity=0.045  Sum_probs=64.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE   91 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELe   91 (438)
                      .-..+...|.....++.++...+.++..++..|+.+...+..|..... +.......+..+...+..+...+......+.
T Consensus       294 rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLe  372 (1486)
T PRK04863        294 ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVE  372 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888999999999999999999999999999998875433 1222334444444444555544444445554


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc
Q 013685           92 RSRTRINLLEGLVSKLEADTSNA  114 (438)
Q Consensus        92 e~~~eI~~LE~ei~kLe~eI~~~  114 (438)
                      .....+..++.++..++..+..+
T Consensus       373 eleeeleeleeEleelEeeLeeL  395 (1486)
T PRK04863        373 EADEQQEENEARAEAAEEEVDEL  395 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.38  E-value=0.00032  Score=75.87  Aligned_cols=266  Identities=18%  Similarity=0.221  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE--------TLLQLETAKLSVEALRAEGMKAIEAYSSIASE   89 (438)
Q Consensus        18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE--------~~~qLE~ae~~Ie~le~ei~elee~~~sl~~E   89 (438)
                      .||+.|-.+|......|--|..+-..|..++.....-...        ...++-++...|+....+..+++-.+..+..+
T Consensus        42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e  121 (546)
T KOG0977|consen   42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE  121 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4677788888888888888888888888777776665521        45566666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685           90 LERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL  169 (438)
Q Consensus        90 Lee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ri  169 (438)
                      ++..+..+...+..+.....++.......   |..      .++-...-..+.-|..++..|+.++.+|...|..+...+
T Consensus       122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l---~~l------eAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l  192 (546)
T KOG0977|consen  122 LKELRKKLEKAEKERRGAREKLDDYLSRL---SEL------EAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL  192 (546)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhhhh---hhh------hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            66665555555444443333333222100   000      001111122333334444444444444444444444444


Q ss_pred             hhhhhh---cHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHH--HHH----HHHHHhhccHHHHhhhhHHhhHH-H---
Q 013685          170 NEGQIQ---STVKIKSAFEQLEQIKHQSGLREVELEAELQKAK--SDI----EELKANLMDKETELQGISEENEG-L---  236 (438)
Q Consensus       170 qEe~~e---~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~--~eL----eELka~l~d~E~ELq~L~eEre~-L---  236 (438)
                      ..+-+-   .+...+...+.|.-.+..+.+.|.+.-.....--  ..-    .+|...+.|+-.+.......+.. +   
T Consensus       193 d~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~  272 (546)
T KOG0977|consen  193 DDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESW  272 (546)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            333221   1136666777777777777777666554433221  111    23333444443333333333222 1   


Q ss_pred             -HHHhhhh-----hhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685          237 -HMQLDKN-----LMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  292 (438)
Q Consensus       237 -~~ei~~~-----~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~  292 (438)
                       +.+|..-     .-+.-..-++.++..++..|..|+++|.+++.+-..|...|+.|+.++.
T Consensus       273 Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~  334 (546)
T KOG0977|consen  273 YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD  334 (546)
T ss_pred             HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh
Confidence             1122100     0011122366889999999999999999999999999999999999887

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.36  E-value=0.0031  Score=75.81  Aligned_cols=265  Identities=21%  Similarity=0.249  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcc
Q 013685           50 QAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLG  129 (438)
Q Consensus        50 ~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~  129 (438)
                      .+.......-.+|+.+...|+.+..+...+...+..+...++.+..++..|+..|........++..       +..   
T Consensus       827 ~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~-------~~~---  896 (1822)
T KOG4674|consen  827 DLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDS-------KSS---  896 (1822)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccc-------cch---
Confidence            3333334456666666677777766666666666666666666666666666666666666555552       100   


Q ss_pred             hhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHH
Q 013685          130 QKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAK  209 (438)
Q Consensus       130 ~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~  209 (438)
                              ..+...+-..+.-...++..|+..+..+...|...+.    .....=..+...+..+.+--.++++.|+...
T Consensus       897 --------~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe----~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~  964 (1822)
T KOG4674|consen  897 --------NEDATILEDTLRKELEEITDLKEELTDALSQIREYQE----EYSSLEQSLESVKSELDETRLELEAKIESLH  964 (1822)
T ss_pred             --------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                    1111222222444444555556666666666555544    3334444555666666666666677777777


Q ss_pred             HHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHH--
Q 013685          210 SDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEML--  287 (438)
Q Consensus       210 ~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeL--  287 (438)
                      ..+-.++.+++++..++..|+++-.   ..+.  .+-.+=..+..++..++..+..+..........+..+...+...  
T Consensus       965 ~k~tslE~~ls~L~~~~~~l~~e~~---~~~k--~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~ 1039 (1822)
T KOG4674|consen  965 KKITSLEEELSELEKEIENLREELE---LSTK--GKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETE 1039 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---cccc--chhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777666666666666654431   1111  00000013334444444444444333333333333322222222  


Q ss_pred             --HHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHH
Q 013685          288 --KLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEA  356 (438)
Q Consensus       288 --KsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~ea  356 (438)
                        +.-...|+..          .+.-|     +...+|+.+.+++.+.+...-.+..-.+..+.+..+.++
T Consensus      1040 ~~~~a~~~Ye~e----------l~~ha-----~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~ 1095 (1822)
T KOG4674|consen 1040 QLRKAQSKYESE----------LVQHA-----DLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQER 1095 (1822)
T ss_pred             HHHHHHHHHHHH----------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhccc
Confidence              2222223322          11111     345666777777777776666666666666666554443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.34  E-value=0.0038  Score=71.08  Aligned_cols=181  Identities=18%  Similarity=0.216  Sum_probs=106.2

Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH-------------HHHHHHHHHHHHHHhhhhhcHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST-------------VKIKSAFEQLEQIKHQSGLREVELEAE  204 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~-------------~elr~a~E~le~~K~e~~~ri~Ele~e  204 (438)
                      +.+.+.++.+|..++..+..-...++..+..++-++.+.+             .+....+..+..........+...+..
T Consensus       786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~  865 (1174)
T KOG0933|consen  786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKD  865 (1174)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence            4556666666666666666666666666666655544333             122222333333333444445555555


Q ss_pred             HHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHH
Q 013685          205 LQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEEN  284 (438)
Q Consensus       205 ie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEi  284 (438)
                      .++...+|...++++++..+++.++.-.-+.+..++.         ...-++.++..++..+...-.+...++..+..++
T Consensus       866 ~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~---------~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~  936 (1174)
T KOG0933|consen  866 VKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKS---------DGELERKKLEHEVTKLESEKANARKEVEKLLKKH  936 (1174)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhh---------cccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence            5666667777777777777777777777777777766         5556666667777777777777777777776666


Q ss_pred             HHHHHHHhhcccc----------------------------CcccchhHHHHHHHHHHHHHHHHHHhhhhH
Q 013685          285 EMLKLEISKRELD----------------------------TPNMNSNLAAEVEAARSAEKEALMKLGLLM  327 (438)
Q Consensus       285 eeLKsEI~~~~~~----------------------------~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~  327 (438)
                      +=+-.+...+...                            ...+|.-++.+++.+...+-+.-.|-..+.
T Consensus       937 ~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie 1007 (1174)
T KOG0933|consen  937 EWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIE 1007 (1174)
T ss_pred             cchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555444433221                            124566666666666655555544444433

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.31  E-value=0.0071  Score=69.88  Aligned_cols=91  Identities=20%  Similarity=0.223  Sum_probs=38.4

Q ss_pred             hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhh
Q 013685          193 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMD  272 (438)
Q Consensus       193 e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~  272 (438)
                      .+.++=.-+.+++.+.+.+++.+...+....++++-...+-+.|.....         .+...+..+...+......+..
T Consensus       469 ~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~---------~~~~~~e~lk~~L~~~~~~~~e  539 (1293)
T KOG0996|consen  469 SLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHE---------TGLKKVEELKGKLLASSESLKE  539 (1293)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444444444444444433333332         3333333333333333333334


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 013685          273 KETELQNISEENEMLKLEIS  292 (438)
Q Consensus       273 le~~l~~L~eEieeLKsEI~  292 (438)
                      ....+..+...+..++.++.
T Consensus       540 ~~~~l~~~k~~l~~~k~e~~  559 (1293)
T KOG0996|consen  540 KKTELDDLKEELPSLKQELK  559 (1293)
T ss_pred             HHHHHHHHHHhhhhHHHHHH
Confidence            44444444444445555554

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.30  E-value=0.00041  Score=74.43  Aligned_cols=43  Identities=26%  Similarity=0.435  Sum_probs=25.8

Q ss_pred             hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685          251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK  293 (438)
Q Consensus       251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~  293 (438)
                      .+..++..++.+|..|.....++..++..+..++..+..++..
T Consensus       355 ~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~  397 (562)
T PHA02562        355 TLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE  397 (562)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Confidence            4555555566666666666666666666666666666665553

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=0.0011  Score=76.24  Aligned_cols=219  Identities=18%  Similarity=0.267  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685           37 MKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR  116 (438)
Q Consensus        37 lr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~  116 (438)
                      .+..+.++...-......+..+...++.++++|+..+..+.+++..-+..+.++.+...+|..|+......+..+...  
T Consensus       389 ~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~--  466 (1293)
T KOG0996|consen  389 LKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEI--  466 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            333333333333333333333555555555555555555555555555544445555555544444444444333322  


Q ss_pred             ccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhh
Q 013685          117 NLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGL  196 (438)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~  196 (438)
                                              ...|+.+-.-++.++..++..++-...++++..-+.. -..+.+..+..+......
T Consensus       467 ------------------------~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~-vaesel~~L~~~~~~~~~  521 (1293)
T KOG0996|consen  467 ------------------------LDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELD-VAESELDILLSRHETGLK  521 (1293)
T ss_pred             ------------------------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence                                    2333344444444444444444444444444333222 223444555566667777


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHH
Q 013685          197 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE  276 (438)
Q Consensus       197 ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~  276 (438)
                      +..++...|......+.+.+..+-++..+|..++.+......++.         .++.+...+...+..++.+++.....
T Consensus       522 ~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~---------~~~~e~~~~~~~~~~~rqrveE~ks~  592 (1293)
T KOG0996|consen  522 KVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP---------KLRKEERNLKSQLNKLRQRVEEAKSS  592 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777788888888888888888888888888888887777777776         44444444444444444444444455


Q ss_pred             HHHHHHHHHHHHHHH
Q 013685          277 LQNISEENEMLKLEI  291 (438)
Q Consensus       277 l~~L~eEieeLKsEI  291 (438)
                      ++.....+..|.+-.
T Consensus       593 ~~~~~s~~kVl~al~  607 (1293)
T KOG0996|consen  593 LSSSRSRNKVLDALM  607 (1293)
T ss_pred             HHhhhhhhHHHHHHH
Confidence            555555555555544

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.24  E-value=0.0074  Score=60.41  Aligned_cols=97  Identities=16%  Similarity=0.149  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALA--------RETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL   90 (438)
Q Consensus        19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~--------eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL   90 (438)
                      +++.|-.++......|-.+..+-..|...+.....-.        .-...++..++..|+.+..+...++-.+..+..++
T Consensus         5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~   84 (312)
T PF00038_consen    5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL   84 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence            4555566666666666666666666665555554442        33667777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           91 ERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        91 ee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      +.++.+..........++.+|..+.
T Consensus        85 ~~~r~k~e~e~~~~~~le~el~~lr  109 (312)
T PF00038_consen   85 EDLRRKYEEELAERKDLEEELESLR  109 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            7777777666666666666666655

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK11637 AmiB activator; Provisional

Probab=98.23  E-value=0.00068  Score=71.31  Aligned_cols=77  Identities=14%  Similarity=0.180  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685           36 NMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS  112 (438)
Q Consensus        36 elr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~  112 (438)
                      .++.++.++..++.+....+..+..++..+...|..+...+..+...++.+..+|..+..+|..++..|..++.+|.
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~  120 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA  120 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.22  E-value=0.0026  Score=72.93  Aligned_cols=32  Identities=25%  Similarity=0.375  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHchhhHHHHHHHHHHHHHHHHH
Q 013685          258 KLAQAVEDLKANLMDKETELQNISEENEMLKL  289 (438)
Q Consensus       258 ~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKs  289 (438)
                      ........++..+.++....+..++++..|+.
T Consensus       433 ~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~  464 (1074)
T KOG0250|consen  433 EEEEEKEHIEGEILQLRKKIENISEELKDLKK  464 (1074)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444445555556666666666666654

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.21  E-value=0.016  Score=65.59  Aligned_cols=165  Identities=18%  Similarity=0.208  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685           33 LMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS  112 (438)
Q Consensus        33 ~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~  112 (438)
                      .+-++..+|.+.+.+..+|+...++....+.+....|+.+-=+-+=+++...++..++.-+..+|++|+-+++=|.++++
T Consensus       277 qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme  356 (1243)
T KOG0971|consen  277 QQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME  356 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555666666667777777766666777788889999999999999999999999999999


Q ss_pred             hcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHh
Q 013685          113 NANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH  192 (438)
Q Consensus       113 ~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~  192 (438)
                      +.+...   .            ....-+..+|...=..+|.-+-+||+-.-...-.++-...+.. ..++.+..+.+.+.
T Consensus       357 ekG~~~---~------------~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE-~k~sE~~eL~r~kE  420 (1243)
T KOG0971|consen  357 EKGSDG---Q------------AASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELE-KKNSELEELRRQKE  420 (1243)
T ss_pred             hcCCCC---c------------ccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Confidence            998411   0            1124467777777788888888888766655555554444333 66777777777777


Q ss_pred             hhhhcHHHHHHHHHHHHHHHH
Q 013685          193 QSGLREVELEAELQKAKSDIE  213 (438)
Q Consensus       193 e~~~ri~Ele~eie~~~~eLe  213 (438)
                      -++.++...+..|..++..+.
T Consensus       421 ~Lsr~~d~aEs~iadlkEQVD  441 (1243)
T KOG0971|consen  421 RLSRELDQAESTIADLKEQVD  441 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777776664

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.16  E-value=0.021  Score=62.19  Aligned_cols=95  Identities=18%  Similarity=0.208  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           17 HLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTR   96 (438)
Q Consensus        17 ~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~e   96 (438)
                      ...++....+..++......++.++..+...+......+.......+.+......+......+..++..+..+..+...+
T Consensus       142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~r  221 (546)
T PF07888_consen  142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQR  221 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333334444444444444444444444333333333333333444444444444555555555555666666


Q ss_pred             HHHHHHHHHHHHHHh
Q 013685           97 INLLEGLVSKLEADT  111 (438)
Q Consensus        97 I~~LE~ei~kLe~eI  111 (438)
                      |..|+.+|..+....
T Consensus       222 i~~LEedi~~l~qk~  236 (546)
T PF07888_consen  222 IRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666666555544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=98.10  E-value=0.052  Score=65.79  Aligned_cols=229  Identities=19%  Similarity=0.187  Sum_probs=116.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIA----   87 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~----   87 (438)
                      ...++..++.++..-+..+...+..+++.+.........++..++....+..+.-.++..++.+..++.+.+..+.    
T Consensus      1005 e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~ 1084 (1822)
T KOG4674|consen 1005 EISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRE 1084 (1822)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3445555555555555666666666666665555555555655555555555555555555555555555444443    


Q ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcch-----------hhhhc
Q 013685           88 ---------------------SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQ-----------KIKEN  135 (438)
Q Consensus        88 ---------------------~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~-----------~~~~~  135 (438)
                                           .++.....+|..|+..-+-|...|+.+...++- -+++.+..+           -.+-.
T Consensus      1085 ~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~-~n~S~~~~g~sdL~~iv~~LR~Eke 1163 (1822)
T KOG4674|consen 1085 SRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAV-SNLSAMLLGLSDLQNIVSFLRKEKE 1163 (1822)
T ss_pred             HHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-ccccccccchHHHHHHHHHHHhHHH
Confidence                                 345555566666666666666666666642110 022222222           02333


Q ss_pred             ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH-----HHHHHHHH----HHH----------HHHhhhhh
Q 013685          136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST-----VKIKSAFE----QLE----------QIKHQSGL  196 (438)
Q Consensus       136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~-----~elr~a~E----~le----------~~K~e~~~  196 (438)
                      ..+.++.-++.+...++..+..+...|+++..-++......+     .+-++.|-    .+.          .-...-..
T Consensus      1164 i~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~ 1243 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLE 1243 (1822)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            344455555555556666666666666666665554444331     11111111    111          11112334


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          197 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       197 ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      ++.++..+|.+++.+|.-|.-.+..+.++++....+...|+++..
T Consensus      1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~ 1288 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEEND 1288 (1822)
T ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555555555555543

>PRK11637 AmiB activator; Provisional

Probab=98.09  E-value=0.0037  Score=65.79  Aligned_cols=91  Identities=7%  Similarity=0.052  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           24 KGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGL  103 (438)
Q Consensus        24 re~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~e  103 (438)
                      ..+|..+...|..+...+.++..........+..+..++..+...|..+..++..+...+..+..++...+.+|..+...
T Consensus        46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~  125 (428)
T PRK11637         46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL  125 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444444444455555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhhhc
Q 013685          104 VSKLEADTSNA  114 (438)
Q Consensus       104 i~kLe~eI~~~  114 (438)
                      +...-..+-..
T Consensus       126 l~~rlra~Y~~  136 (428)
T PRK11637        126 LAAQLDAAFRQ  136 (428)
T ss_pred             HHHHHHHHHHc
Confidence            55554444433

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.08  E-value=0.023  Score=65.03  Aligned_cols=138  Identities=19%  Similarity=0.235  Sum_probs=104.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           15 SAHLELQSLKGNLIETISLM-ENMKNQLRESKESETQAQALA------RE-----TLLQLETAKLSVEALRAEGMKAIEA   82 (438)
Q Consensus        15 ~a~~ELe~lre~L~~~e~~I-eelr~qL~dl~~e~~~A~~~~------eE-----~~~qLE~ae~~Ie~le~ei~elee~   82 (438)
                      .|+.=++--...+.++..++ +++-=++..|+.++++.+.|.      +.     +.-+.=.+......+...+.++...
T Consensus       180 ~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~  259 (1174)
T KOG0933|consen  180 AAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDK  259 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555666664444 456778899999999999998      22     2334334566777788888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685           83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL  162 (438)
Q Consensus        83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I  162 (438)
                      +..+...+.+...+|.+++..|.+|+.....--                      +.++.-|...+.++..+|-+..+.+
T Consensus       260 i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em----------------------~~~~~~L~~~~~~~~~~~tr~~t~l  317 (1174)
T KOG0933|consen  260 IAKLDESLGKTDKEIESLEKEIKEIEQQRDAEM----------------------GGEVKALEDKLDSLQNEITREETSL  317 (1174)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----------------------chhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987654443                      4556778889999999999999999


Q ss_pred             HHHHHhhhhhhh
Q 013685          163 EIAETKLNEGQI  174 (438)
Q Consensus       163 e~aE~riqEe~~  174 (438)
                      .....-|+.+..
T Consensus       318 ~~~~~tl~~e~~  329 (1174)
T KOG0933|consen  318 NLKKETLNGEEE  329 (1174)
T ss_pred             HHHHHHHhhhHH
Confidence            888888776544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.06  E-value=8.2e-07  Score=100.83  Aligned_cols=305  Identities=21%  Similarity=0.285  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINL   99 (438)
Q Consensus        20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~   99 (438)
                      ...+...|..-+..|..+..++++-...+.+++..+-++..++..++..++.=+....+.+..+..+..+|+.+..++..
T Consensus         6 ~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee   85 (859)
T PF01576_consen    6 KEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEE   85 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666677777777777777777777777777777777777777777776667777777777766666665544


Q ss_pred             HHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhH----HHHHHHHHHHHHHHHhhhhhhhh
Q 013685          100 LEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLK----SEVGQLRSALEIAETKLNEGQIQ  175 (438)
Q Consensus       100 LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk----~EI~~Les~Ie~aE~riqEe~~e  175 (438)
                      ..+.-. .+.++...                      .+.++..|+..+++..    ..|..|+..-...-..+++... 
T Consensus        86 ~~~~t~-aq~E~~kk----------------------rE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle-  141 (859)
T PF01576_consen   86 AGGATQ-AQIELNKK----------------------REAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLE-  141 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhCcHH-hhHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-
Confidence            332211 11111111                      1344444444443211    2223333222222222222211 


Q ss_pred             cHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHH
Q 013685          176 STVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNND  255 (438)
Q Consensus       176 ~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~e  255 (438)
                         .++.....++..++.+...+.++...|..+.............++..|..+....+.....+.         ++...
T Consensus       142 ---~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~---------el~~~  209 (859)
T PF01576_consen  142 ---QLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRN---------ELTEQ  209 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH---------HHHHH
Confidence               333333444444444444455555544444444444444455555555555555555554444         55555


Q ss_pred             HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhH
Q 013685          256 LRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNR  335 (438)
Q Consensus       256 l~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~  335 (438)
                      +..+...+..|...|.+.+..+..+......|.+++.+....           ++.-..+-.-...++..+..+      
T Consensus       210 k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~-----------leeEtr~k~~L~~~l~~le~e------  272 (859)
T PF01576_consen  210 KAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQ-----------LEEETRAKQALEKQLRQLEHE------  272 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------HHhHhhhhhhhHHHHHHHHHH------
Confidence            666666666666666666666666655555555555532211           111111111222334443333      


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 013685          336 RAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASM  378 (438)
Q Consensus       336 ~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~  378 (438)
                       ...|.++|+--+.++..++..+.++-.+..+||+-.+.-+..
T Consensus       273 -~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~  314 (859)
T PF01576_consen  273 -LEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ  314 (859)
T ss_dssp             -------------------------------------------
T ss_pred             -HHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence             347889999999999999999999999999999998876665

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.99  E-value=0.025  Score=57.26  Aligned_cols=86  Identities=20%  Similarity=0.371  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHH
Q 013685          201 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNI  280 (438)
Q Consensus       201 le~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L  280 (438)
                      ....+..+.+++.+++....++-.+++.|.++-.....++.         .+-.+.++++...+.+-..+.........+
T Consensus       156 ~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~---------k~~~~~De~Rkeade~he~~ve~~~~~~e~  226 (294)
T COG1340         156 ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMI---------KLFEEADELRKEADELHEEFVELSKKIDEL  226 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            33344444444444444444444444444444444444443         444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHhhcc
Q 013685          281 SEENEMLKLEISKRE  295 (438)
Q Consensus       281 ~eEieeLKsEI~~~~  295 (438)
                      ..++..+..+|.++.
T Consensus       227 ~ee~~~~~~elre~~  241 (294)
T COG1340         227 HEEFRNLQNELRELE  241 (294)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.95  E-value=0.05  Score=64.59  Aligned_cols=94  Identities=15%  Similarity=0.248  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHH
Q 013685          276 ELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAE  355 (438)
Q Consensus       276 ~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~e  355 (438)
                      ....+..++..++.++.     ....+++....+..+..+-..       ..+.+.........+..++..++..+...+
T Consensus       443 ~~~~~~~~l~~l~~~~~-----~~~~~~e~~~~~~~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  510 (1201)
T PF12128_consen  443 QREQLKSELAELKQQLK-----NPQYTEEEKEQLEQADKRLEQ-------AQEQQNQAQQAVEELQAEEQELRKERDQAE  510 (1201)
T ss_pred             HHHHHHHHHHHHHHHHh-----CcCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444445555443     233455555555554433222       233344444445556666777777778888


Q ss_pred             HHHhhhhhchHHHHHHHHHHHHHhcc
Q 013685          356 AELRRLKVQSDQWRKAAEAAASMLST  381 (438)
Q Consensus       356 ae~~rl~vq~~qwrkaae~aaa~l~~  381 (438)
                      ..|+.++-+-.+-+-.-...-+.|..
T Consensus       511 ~~l~~~~~~~~~~~~~~~~l~~~L~p  536 (1201)
T PF12128_consen  511 EELRQARRELEELRAQIAELQRQLDP  536 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            88888888888877777777888864

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.92  E-value=0.0099  Score=68.39  Aligned_cols=15  Identities=27%  Similarity=0.364  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHhc
Q 013685          366 DQWRKAAEAAASMLS  380 (438)
Q Consensus       366 ~qwrkaae~aaa~l~  380 (438)
                      +-|..|-+-+-.=|.
T Consensus       508 ~KWa~aIE~~L~n~l  522 (1074)
T KOG0250|consen  508 PKWALAIERCLGNLL  522 (1074)
T ss_pred             cHHHHHHHHHHHHhh
Confidence            479999987754443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.88  E-value=0.043  Score=60.59  Aligned_cols=264  Identities=13%  Similarity=0.161  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccc
Q 013685           58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQD  137 (438)
Q Consensus        58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~  137 (438)
                      ...++..+...|..+...+..+...+..+...+.++..++.........++....-....               .+-+.
T Consensus       326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~---------------~~lL~  390 (594)
T PF05667_consen  326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT---------------VELLP  390 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhc
Confidence            344555555555555555555555555555555555555555555555555544433310               00111


Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA  217 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka  217 (438)
                      +.+-     -|..|..=|..-..++..+..+-+....    -+-..|..+..............-.+|+.++..+.++..
T Consensus       391 d~e~-----ni~kL~~~v~~s~~rl~~L~~qWe~~R~----pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~  461 (594)
T PF05667_consen  391 DAEE-----NIAKLQALVEASEQRLVELAQQWEKHRA----PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEE  461 (594)
T ss_pred             CcHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            1111     1122233333333333333333333333    333334444444444444444455778888999999999


Q ss_pred             hhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 013685          218 NLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD  297 (438)
Q Consensus       218 ~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~  297 (438)
                      .+..++.....|..+.+.+...+....=+.+..+...-+.+++.+|.++=..--.+..++..+...+.-==..+.+.- .
T Consensus       462 e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli-f  540 (594)
T PF05667_consen  462 EIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI-F  540 (594)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-H
Confidence            999999999999999999988887777788999999999999999998876655555555555444332111111000 0


Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHH
Q 013685          298 TPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEA  346 (438)
Q Consensus       298 ~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a  346 (438)
                      ..-..|+++..+=-==+.-++-...|-...++...-.|....+-+|++.
T Consensus       541 rdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~  589 (594)
T PF05667_consen  541 RDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDT  589 (594)
T ss_pred             HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            1111333332222222333344444444445555555555555555554

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.86  E-value=0.073  Score=58.37  Aligned_cols=95  Identities=18%  Similarity=0.163  Sum_probs=46.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------H--------HHHHHHHHHHHHHHHH
Q 013685            9 QTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESE-TQAQALA-------R--------ETLLQLETAKLSVEAL   72 (438)
Q Consensus         9 ~~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~-~~A~~~~-------e--------E~~~qLE~ae~~Ie~l   72 (438)
                      ..+.-..|..-+..++..+..+...++.+=.=+.+|.... .+.....       .        .+..++..++..|...
T Consensus       189 ~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~  268 (569)
T PRK04778        189 ESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDEN  268 (569)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Confidence            3444455555566666666666555555544444444443 2222111       1        1455666666665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           73 RAEGMKAIEAYSSIASELERSRTRINLLEGLVS  105 (438)
Q Consensus        73 e~ei~elee~~~sl~~ELee~~~eI~~LE~ei~  105 (438)
                      ...+..+.  +..+...++.+..+|+.|-+.+.
T Consensus       269 ~~~l~~l~--l~~~~~~~~~i~~~Id~Lyd~le  299 (569)
T PRK04778        269 LALLEELD--LDEAEEKNEEIQERIDQLYDILE  299 (569)
T ss_pred             HHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555443  44444444444444444444433

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.83  E-value=0.012  Score=67.06  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHH
Q 013685          180 IKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGL  236 (438)
Q Consensus       180 lr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L  236 (438)
                      ||+.|+.+.....+-..++.-+..+|..++.++.++-.....++..+-+.+.+-+.+
T Consensus       395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~  451 (1200)
T KOG0964|consen  395 IRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEF  451 (1200)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH
Confidence            455555555555555555555555555555444444444444444444333333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.81  E-value=0.15  Score=60.58  Aligned_cols=289  Identities=19%  Similarity=0.234  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcc
Q 013685           58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELE-RSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQ  136 (438)
Q Consensus        58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELe-e~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l  136 (438)
                      ...+++.++..+..|.+...+++..|+.....|. .....+..+...+..+...+...-.            ........
T Consensus       357 ~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~------------~~~~~~~~  424 (1201)
T PF12128_consen  357 WRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERRE------------QIEEEYQA  424 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence            4555566666666666666666666666555542 2223333444444444433332210            00000000


Q ss_pred             cccchH-HHHHHHHhhHHHHHHHHHHHHHHHHhhhh-----hhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHH
Q 013685          137 DTMESK-HLEEELSSLKSEVGQLRSALEIAETKLNE-----GQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKS  210 (438)
Q Consensus       137 ~~~Ei~-eL~~Eie~lk~EI~~Les~Ie~aE~riqE-----e~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~  210 (438)
                      ...+.. +....+..++.+...+...+..+...+..     +..+.-.....+++..+.......+....+..+...++.
T Consensus       425 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  504 (1201)
T PF12128_consen  425 LEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRK  504 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011111 22333444444444455544444444432     111111334444444455555555555555555555555


Q ss_pred             HHHHHHHhhccHHHHhhhhHHhhHHHHHHhhh---------------------------------------hhh------
Q 013685          211 DIEELKANLMDKETELQGISEENEGLHMQLDK---------------------------------------NLM------  245 (438)
Q Consensus       211 eLeELka~l~d~E~ELq~L~eEre~L~~ei~~---------------------------------------~~~------  245 (438)
                      .-......+.....++..+......|..-+..                                       ..+      
T Consensus       505 ~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dsly  584 (1201)
T PF12128_consen  505 ERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLY  584 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccc
Confidence            55555555555555566666666555555520                                       000      


Q ss_pred             --------------hhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHH
Q 013685          246 --------------CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEA  311 (438)
Q Consensus       246 --------------~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~  311 (438)
                                    ..-+..++.++..+...+..+......++..+......+..++.++.                  .
T Consensus       585 Gl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~------------------~  646 (1201)
T PF12128_consen  585 GLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREIT------------------Q  646 (1201)
T ss_pred             eeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence                          11222444444444444444444444444444444444444444333                  3


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHhhHH-HHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHH
Q 013685          312 ARSAEKEALMKLGLLMEEADKSNRR-AARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAA  376 (438)
Q Consensus       312 a~~~~~~~~~k~~~~~e~~~~~~~~-~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aa  376 (438)
                      +...-+-+-.++.++..+...-..+ .....++....+.+-..++.++..+.-+..+|..+-....
T Consensus       647 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~  712 (1201)
T PF12128_consen  647 AEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQL  712 (1201)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444544444333222 2234455666777777788888888888888877655443

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.77  E-value=0.055  Score=61.46  Aligned_cols=265  Identities=16%  Similarity=0.147  Sum_probs=135.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA-------RETLLQLETAKLSVEALRAEGMKAIEAYS   84 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~-------eE~~~qLE~ae~~Ie~le~ei~elee~~~   84 (438)
                      +-..+.-+|...|.+..+...--+..+..+.|..+.+.-+.-..       +.++.+++.++..+++++.+++=+..+..
T Consensus       277 qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme  356 (1243)
T KOG0971|consen  277 QQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEME  356 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888888889999998888999999999998887766555       23566666666666666666655554443


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHH
Q 013685           85 SIASEL-ERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALE  163 (438)
Q Consensus        85 sl~~EL-ee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie  163 (438)
                      ..-..- ..+..+...||.-=..|...+-++..-       +-..++.  .-..-.+......++++++.--+.|...++
T Consensus       357 ekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDl-------sA~ek~d--~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d  427 (1243)
T KOG0971|consen  357 EKGSDGQAASSYQFKQLEQQNARLKDALVRLRDL-------SASEKQD--HQKLQKELEKKNSELEELRRQKERLSRELD  427 (1243)
T ss_pred             hcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhc-------chHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            221111 112223333333333333333333310       0000000  000111222233333444444444444555


Q ss_pred             HHHHhhhhhhhhcH--HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHh-hhhHHhhHHHHHHh
Q 013685          164 IAETKLNEGQIQST--VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETEL-QGISEENEGLHMQL  240 (438)
Q Consensus       164 ~aE~riqEe~~e~~--~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~EL-q~L~eEre~L~~ei  240 (438)
                      .+|..|.+++.+-.  .--..-.+++-.++-.+..++..|+..|..+++ ++++.+.|.+---|| ..|+++.+.++-.+
T Consensus       428 ~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~ele~DLreEld~~~g~~  506 (1243)
T KOG0971|consen  428 QAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNRELELDLREELDMAKGAR  506 (1243)
T ss_pred             HHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            55555555444221  011112334444444444555554444444432 223333322222221 13445555555444


Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013685          241 DKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE  295 (438)
Q Consensus       241 ~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~  295 (438)
                      .         ++..++......+-+...-++-.+...+.|..+|.+++.+...-+
T Consensus       507 k---------el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sse  552 (1243)
T KOG0971|consen  507 K---------ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSE  552 (1243)
T ss_pred             H---------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            4         677777777777777777777777777777777777777655443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.72  E-value=0.12  Score=56.69  Aligned_cols=102  Identities=21%  Similarity=0.231  Sum_probs=64.0

Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH---HHHHHHHHHHHHHH-----hhhhhcHHHHHHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST---VKIKSAFEQLEQIK-----HQSGLREVELEAELQKAK  209 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~---~elr~a~E~le~~K-----~e~~~ri~Ele~eie~~~  209 (438)
                      .+...+=..-+..++..+..|+..++..=.=|.+++...=   .+++.-|.++....     -....+|..+...|....
T Consensus       190 ~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~  269 (569)
T PRK04778        190 SGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENL  269 (569)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHH
Confidence            3445555566777777777777777766555555555332   24444444443221     145667777777777766


Q ss_pred             HHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          210 SDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       210 ~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      ..|..|  .+...+..+..|.+..+.|-..+.
T Consensus       270 ~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~le  299 (569)
T PRK04778        270 ALLEEL--DLDEAEEKNEEIQERIDQLYDILE  299 (569)
T ss_pred             HHHHhc--ChHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666  566777778888888877777776

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.70  E-value=0.12  Score=56.22  Aligned_cols=88  Identities=13%  Similarity=0.144  Sum_probs=53.3

Q ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685            7 AAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSI   86 (438)
Q Consensus         7 ~~~~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl   86 (438)
                      +.++-.+++-..+|..-...+......++.++.....+.+++..++.|+..+...-......++.+..++..-+++++.+
T Consensus       234 ~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~l  313 (581)
T KOG0995|consen  234 ANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKL  313 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455444456666678888999999999999999999997754444444444444444444444444444


Q ss_pred             HHHHHHHH
Q 013685           87 ASELERSR   94 (438)
Q Consensus        87 ~~ELee~~   94 (438)
                      ..+.+.++
T Consensus       314 q~~~d~Lk  321 (581)
T KOG0995|consen  314 QKENDELK  321 (581)
T ss_pred             HHHHHHHH
Confidence            44443333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.67  E-value=0.17  Score=57.09  Aligned_cols=72  Identities=13%  Similarity=0.093  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSI   86 (438)
Q Consensus        15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl   86 (438)
                      .+.....-+.+.+....++|-.+.+.+..++-+....+.-+.....++...+-+|+.+.+++.+++.++..-
T Consensus        89 iyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk  160 (1265)
T KOG0976|consen   89 IYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAK  160 (1265)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence            333444555666666677777777777777666666666666666666666666666666666666554433

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.67  E-value=0.01  Score=58.42  Aligned_cols=158  Identities=19%  Similarity=0.236  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685           34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN  113 (438)
Q Consensus        34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~  113 (438)
                      |..+-.++..+.-.+.....++.....++++++..+..++-.+..++..+..+..++...+.+++..+.       .+..
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~-------kl~~   84 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE-------KLSA   84 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhc
Confidence            334444444444444444444444444455555554444444444444444444444444444444444       3322


Q ss_pred             cccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhh
Q 013685          114 ANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQ  193 (438)
Q Consensus       114 ~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e  193 (438)
                      ...                     ..++..|+.++..++..+..|++.|..+..++..+..                   
T Consensus        85 v~~---------------------~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~-------------------  124 (239)
T COG1579          85 VKD---------------------ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEK-------------------  124 (239)
T ss_pred             ccc---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            221                     3345555555555555555555555544444333322                   


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHH----HHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          194 SGLREVELEAELQKAKSDIEEL----KANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       194 ~~~ri~Ele~eie~~~~eLeEL----ka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                         .|..+...|..++..+.+.    ..++..+..+.+.+..++..|..++.
T Consensus       125 ---~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~  173 (239)
T COG1579         125 ---EIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD  173 (239)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               2222333333333333322    23344455556667777777777776

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.63  E-value=0.0097  Score=58.64  Aligned_cols=71  Identities=15%  Similarity=0.139  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL   90 (438)
Q Consensus        20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL   90 (438)
                      ++.+-.+++++.-++.+...-|..+..+...+...+..+...++.++..+..++.++.++.+.+......|
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555554444444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.58  E-value=0.084  Score=55.89  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685          256 LRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  292 (438)
Q Consensus       256 l~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~  292 (438)
                      +.+....+..+..++..-...+..|...=..|+.+|.
T Consensus       205 ~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia  241 (420)
T COG4942         205 LEERKKTLAQLNSELSADQKKLEELRANESRLKNEIA  241 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3333444444455555555555555555555555554

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.54  E-value=0.082  Score=50.62  Aligned_cols=136  Identities=20%  Similarity=0.221  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccc
Q 013685           58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQD  137 (438)
Q Consensus        58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~  137 (438)
                      +-.-+..-..+|..|...+....+.+..+...+-....+|..+.+.+..|..-+....                      
T Consensus        59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dkn----------------------  116 (194)
T PF15619_consen   59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKN----------------------  116 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------------------
Confidence            3334445556666677777777777777777777777777766666666665433222                      


Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA  217 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka  217 (438)
                      -.+.       +.+...++.+...++..+.+++.+.....    =.--...+--..-..++.++...+..+..+|..|..
T Consensus       117 L~eR-------eeL~~kL~~~~~~l~~~~~ki~~Lek~le----L~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~  185 (194)
T PF15619_consen  117 LAER-------EELQRKLSQLEQKLQEKEKKIQELEKQLE----LENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ  185 (194)
T ss_pred             chhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122       45555666666666666666665544222    111122333344455667777777777777777777


Q ss_pred             hhccHHHHh
Q 013685          218 NLMDKETEL  226 (438)
Q Consensus       218 ~l~d~E~EL  226 (438)
                      .+.+++-+|
T Consensus       186 klkEKer~L  194 (194)
T PF15619_consen  186 KLKEKEREL  194 (194)
T ss_pred             HHHHHhhcC
Confidence            777776554

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.51  E-value=2.2e-05  Score=89.41  Aligned_cols=98  Identities=18%  Similarity=0.243  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI   97 (438)
Q Consensus        18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI   97 (438)
                      -+...+..+++.+...|+.+......+...+.++...+.++..++......+..+.....++..++..+...|+.....+
T Consensus       152 K~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~  231 (859)
T PF01576_consen  152 KEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQL  231 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444555555555544444444444444455555555555555555555555566666666666666555555


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 013685           98 NLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        98 ~~LE~ei~kLe~eI~~~e  115 (438)
                      ..+......|...+..+.
T Consensus       232 ~~l~r~k~~L~~qLeelk  249 (859)
T PF01576_consen  232 SQLQREKSSLESQLEELK  249 (859)
T ss_dssp             ------------------
T ss_pred             HHHHHHHHHHHHHHHhhH
Confidence            555555555555555444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.50  E-value=0.47  Score=57.71  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 013685          338 ARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAAS  377 (438)
Q Consensus       338 ~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa  377 (438)
                      +.+.++....+.-...|-..+.+|.-+.++|.+|-++..-
T Consensus       575 ~~~~~~~~~~r~~~~qL~~~i~~l~~~ap~W~~a~~al~~  614 (1486)
T PRK04863        575 SEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALAR  614 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHhhHHHHHH
Confidence            3445555555556677888888899999999988887766

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.49  E-value=0.023  Score=63.87  Aligned_cols=100  Identities=26%  Similarity=0.291  Sum_probs=60.2

Q ss_pred             hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHh-------hHHHHHHhhhhhhh--hhhhhhHHH---HHHHH
Q 013685          193 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEE-------NEGLHMQLDKNLMC--QRESQLNND---LRKLA  260 (438)
Q Consensus       193 e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eE-------re~L~~ei~~~~~~--~~~~el~~e---l~~~~  260 (438)
                      ..++|+.+++.+|+.++.+|-.+.+..+.++.++++|+.-       .+.|.+.+.-.++.  .=|.-|..|   ...+.
T Consensus       542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf  621 (697)
T PF09726_consen  542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF  621 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            4677999999999999999999999999999999877653       44455555411110  011111111   12233


Q ss_pred             HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685          261 QAVEDLKANLMDKETELQNISEENEMLKLEIS  292 (438)
Q Consensus       261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~  292 (438)
                      ..+.+.+.+|+-....+-.=..||.+||.-|.
T Consensus       622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~  653 (697)
T PF09726_consen  622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIA  653 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555556665555

; GO: 0016021 integral to membrane

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.46  E-value=0.29  Score=54.44  Aligned_cols=115  Identities=20%  Similarity=0.306  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHhhh------hhcH-HHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhh------hh
Q 013685          179 KIKSAFEQLEQIKHQS------GLRE-VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKN------LM  245 (438)
Q Consensus       179 elr~a~E~le~~K~e~------~~ri-~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~------~~  245 (438)
                      ++...|..+-|-+.+.      .+.+ .+|...+..+...+..++..+.-+..++++|..+|+.+...+..-      +.
T Consensus       171 Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~  250 (617)
T PF15070_consen  171 ELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLA  250 (617)
T ss_pred             HHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566777776666432      2333 488888889999999999999999999999999998766555421      11


Q ss_pred             hhh-----h--------hhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685          246 CQR-----E--------SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK  293 (438)
Q Consensus       246 ~~~-----~--------~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~  293 (438)
                      +.+     +        ..|..+-......++.....|......+..+..+|..|+.++..
T Consensus       251 ~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~  311 (617)
T PF15070_consen  251 SEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSL  311 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            111     1        12222222222344555666777888999999999999999974

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.37  E-value=0.37  Score=53.63  Aligned_cols=316  Identities=21%  Similarity=0.257  Sum_probs=197.0

Q ss_pred             HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           25 GNLIETISLMENMKNQLR--------ESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTR   96 (438)
Q Consensus        25 e~L~~~e~~Ieelr~qL~--------dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~e   96 (438)
                      .+|.......+++|.+-.        .+++...+..-.-++........+..|.-|...+.+-+..+..+...|.+++..
T Consensus       190 ~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~  269 (786)
T PF05483_consen  190 ENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDK  269 (786)
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence            344444445555554433        233333333333355666677777777777777777788888888888888888


Q ss_pred             HHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh---hh
Q 013685           97 INLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE---GQ  173 (438)
Q Consensus        97 I~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE---e~  173 (438)
                      |+-|++.-.....-+...                       ..+...|..+++.++..+....+.-..++..++-   -.
T Consensus       270 ~~qLeE~~~~q~E~Lkes-----------------------~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~  326 (786)
T PF05483_consen  270 CNQLEEKTKEQHENLKES-----------------------NEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTL  326 (786)
T ss_pred             HHHHHHHHHHHHHHHHHh-----------------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888876655544433322                       3467778888888888888877777777766652   22


Q ss_pred             hhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhh--hh------
Q 013685          174 IQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKN--LM------  245 (438)
Q Consensus       174 ~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~--~~------  245 (438)
                      .+.+.+.-..++.+.+.+..+...+.++...|-.++.-|.-=..++.+.++.|..+.-+-..-..++...  ..      
T Consensus       327 ~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~e  406 (786)
T PF05483_consen  327 IQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVE  406 (786)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHH
Confidence            3333455556666666676666666666666666655555555555555555544444433333333210  01      


Q ss_pred             ----------------------------hhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 013685          246 ----------------------------CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD  297 (438)
Q Consensus       246 ----------------------------~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~  297 (438)
                                                  ...+.++-.-+......|.+|+..|.+.-..-+.+..++.+|+.++..-...
T Consensus       407 leeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLK  486 (786)
T PF05483_consen  407 LEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLK  486 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence                                        1233455555566667899999999999999999999999999999863322


Q ss_pred             CcccchhHHHH-------HHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHH
Q 013685          298 TPNMNSNLAAE-------VEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQ  367 (438)
Q Consensus       298 ~~~~~~e~~~~-------~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~q  367 (438)
                          |.|+.+.       -..-..--..++..+..+.+...-|.+.+.|+.-|..--+..+..|--+|--+|.+..|
T Consensus       487 ----N~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~  559 (786)
T PF05483_consen  487 ----NTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQ  559 (786)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2222211       11111122345666777788888899999999998888777777777777666655544

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.37  E-value=5.8e-05  Score=84.33  Aligned_cols=26  Identities=19%  Similarity=0.243  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHchhhHHHH
Q 013685          251 QLNNDLRKLAQAVEDLKANLMDKETE  276 (438)
Q Consensus       251 el~~el~~~~~~Ie~Lka~L~~le~~  276 (438)
                      .|...+.-...+++-|++.|.+....
T Consensus       403 RLerq~~L~~kE~d~LR~~L~syd~e  428 (722)
T PF05557_consen  403 RLERQKALATKERDYLRAQLKSYDKE  428 (722)
T ss_dssp             --------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            34444444444455555555444433

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF13514 AAA_27: AAA domain

Probab=97.34  E-value=0.58  Score=55.23  Aligned_cols=48  Identities=21%  Similarity=0.156  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhhhch-HHHHHHHHHHHHHhccCC
Q 013685          336 RAARMAEQLEAAQSANCEAEAELRRLKVQS-DQWRKAAEAAASMLSTGN  383 (438)
Q Consensus       336 ~~~~~~e~l~a~~~a~~~~eae~~rl~vq~-~qwrkaae~aaa~l~~g~  383 (438)
                      ...++.++.-+...|..-|+.-+.+.|-.. +.=-+.|...-+.|.+|.
T Consensus       948 ~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~p~vl~~As~~f~~LT~G~  996 (1111)
T PF13514_consen  948 ELEELAEEWAALRLAAELLEEAIERYREERQPPVLARASEYFSRLTGGR  996 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCC
Confidence            334555666666777777888887777532 333445566777776654

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=97.31  E-value=0.18  Score=48.79  Aligned_cols=197  Identities=14%  Similarity=0.202  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSR   94 (438)
Q Consensus        15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~   94 (438)
                      ..+.-+..++.++...+..+..++.+..++..........+++...-+   -.-|.............+..+..+-++..
T Consensus         6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i---~~~i~e~~~~~~~~~~~i~~~~~erdq~~   82 (207)
T PF05010_consen    6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTI---AQMIEEKQKQKELSEAEIQKLLKERDQAY   82 (207)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHhhHHhHHHHHHHHHhhHHHHH
Confidence            345556777777777777788888888888877777777776544322   22334444445555566667777777777


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685           95 TRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus        95 ~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~  174 (438)
                      +.+++++.-.+.|...-.....                       -|..++.--+.++..|.....+|.-.+.+|+-+..
T Consensus        83 ~dL~s~E~sfsdl~~ryek~K~-----------------------vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~  139 (207)
T PF05010_consen   83 ADLNSLEKSFSDLHKRYEKQKE-----------------------VIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKA  139 (207)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH-----------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777766555552                       23333344457788888888899999999998888


Q ss_pred             hcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHH
Q 013685          175 QSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLH  237 (438)
Q Consensus       175 e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~  237 (438)
                      -....+..+-+.|.++...+.....-|.+.|++.+..+.-|...+..+.-|..+|..==+.|-
T Consensus       140 hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI  202 (207)
T PF05010_consen  140 HAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI  202 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777889999999999999999999999999999888888887777766665555544333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.59  Score=53.93  Aligned_cols=102  Identities=23%  Similarity=0.260  Sum_probs=53.4

Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHH------HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHH
Q 013685          140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTV------KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIE  213 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~------elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLe  213 (438)
                      .......++..++.+|..|+..|..+-.+.+-...+.|.      -+.=.+-+++..+....+.-......+.+.+..+.
T Consensus       259 ~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~  338 (1200)
T KOG0964|consen  259 ALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIE  338 (1200)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence            344445555555555555555555544443333332220      11111233333333333334444555666777777


Q ss_pred             HHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          214 ELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       214 ELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      +.+..+..++-....|.++-..++..|.
T Consensus       339 e~~~EL~~I~Pky~~l~~ee~~~~~rl~  366 (1200)
T KOG0964|consen  339 EKKDELSKIEPKYNSLVDEEKRLKKRLA  366 (1200)
T ss_pred             HHHHHHHHhhhHHHHHHhHHHHHHHHHH
Confidence            7777777777777777777776666665

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.25  E-value=0.053  Score=61.00  Aligned_cols=183  Identities=23%  Similarity=0.271  Sum_probs=86.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhh
Q 013685          150 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGI  229 (438)
Q Consensus       150 ~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L  229 (438)
                      .++++|.+++...+.++.+|+.+...+. .=+..+..++++-.+-...-..++++|..-+..       -..-+..-.  
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq-~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~-------r~~ee~~aa--  526 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNLVQARQ-QDKQSLQQLEKRLAEERRQRASLEKQLQEERKA-------RKEEEEKAA--  526 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHhhh--
Confidence            5677777777777777777777666444 223334444444444333334444433322211       110000000  


Q ss_pred             HHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHH
Q 013685          230 SEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEV  309 (438)
Q Consensus       230 ~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~  309 (438)
                         +---.... ....|.-  -++.++..++.++..|+..|..++.+...+..++.+|+....    +..+-.+.+++.+
T Consensus       527 ---r~~~~~~~-~r~e~~e--~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~----e~~~~~e~L~~aL  596 (697)
T PF09726_consen  527 ---RALAQAQA-TRQECAE--SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEK----ESEKDTEVLMSAL  596 (697)
T ss_pred             ---hccccchh-ccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHH
Confidence               00000000 0001110  355566666667777777777777777777777765555321    1111123444333


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHH-----------HHHHHHHHhhHHHHHHHhhhhh
Q 013685          310 EAARSAEKEALMKLGLLMEEADKSNRRAARMA-----------EQLEAAQSANCEAEAELRRLKV  363 (438)
Q Consensus       310 ~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~-----------e~l~a~~~a~~~~eae~~rl~v  363 (438)
                      .+.+           .=+.+++.|=.-.-||+           -||+-++..--.-|.|+.-||.
T Consensus       597 ~amq-----------dk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~  650 (697)
T PF09726_consen  597 SAMQ-----------DKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKA  650 (697)
T ss_pred             HHHH-----------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222           11444444422222443           4666667666677778887774

; GO: 0016021 integral to membrane

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.24  E-value=0.73  Score=54.24  Aligned_cols=83  Identities=16%  Similarity=0.073  Sum_probs=48.3

Q ss_pred             hhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           13 AESAHLELQSLK---GNLIETISLMENMKNQLRESK-ESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIAS   88 (438)
Q Consensus        13 ~E~a~~ELe~lr---e~L~~~e~~Ieelr~qL~dl~-~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~   88 (438)
                      .+.+....+.+.   +-....+..|..++.+.+.|. .+++-++..+.+...++...+..+..+.+.+..+++.++.+..
T Consensus       450 ~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~  529 (1317)
T KOG0612|consen  450 KEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK  529 (1317)
T ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444433   555566677777777777777 3555566666665555555666666666666666665555555


Q ss_pred             HHHHHHH
Q 013685           89 ELERSRT   95 (438)
Q Consensus        89 ELee~~~   95 (438)
                      ..+.+..
T Consensus       530 ~~~~~~~  536 (1317)
T KOG0612|consen  530 KNDNAAD  536 (1317)
T ss_pred             HHHHHHH
Confidence            5444433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.24  E-value=0.72  Score=54.09  Aligned_cols=64  Identities=22%  Similarity=0.220  Sum_probs=43.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAE   75 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~e   75 (438)
                      -|..++.+|.+...+...+.+.|.+++.+-++.......+....+.+..|.+....++..|-..
T Consensus      1416 ~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~ 1479 (1758)
T KOG0994|consen 1416 MAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQ 1479 (1758)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888888888888888888888777666666666565666655555444444333

>PRK09039 hypothetical protein; Validated

Probab=97.22  E-value=0.05  Score=56.19  Aligned_cols=123  Identities=14%  Similarity=0.165  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           24 KGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGL  103 (438)
Q Consensus        24 re~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~e  103 (438)
                      .+.|...+..|..+..++.++-+...-=......+..++..++..+..++.....++..+............++..+...
T Consensus        45 s~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~  124 (343)
T PRK09039         45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE  124 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence            34455555555555555555444433333333446666666666666666666777776666555555666666666666


Q ss_pred             HHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685          104 VSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL  169 (438)
Q Consensus       104 i~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ri  169 (438)
                      +......+...-                       ..+-.|+.+|..++.-+..|.+.|..++.+.
T Consensus       125 L~~~k~~~se~~-----------------------~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~  167 (343)
T PRK09039        125 LDSEKQVSARAL-----------------------AQVELLNQQIAALRRQLAALEAALDASEKRD  167 (343)
T ss_pred             HHHHHHHHHHhh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655444433                       2455556666666666666666666655554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.15  E-value=0.029  Score=51.15  Aligned_cols=56  Identities=23%  Similarity=0.395  Sum_probs=49.7

Q ss_pred             HHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHH
Q 013685          318 EALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAE  373 (438)
Q Consensus       318 ~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae  373 (438)
                      -.--|+..|.++++.+..+....+++|+-+...-+.+|-=++.|--++++|=+=-+
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e  132 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE  132 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            45578899999999999999999999999999999999999999999999965443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.09  E-value=0.92  Score=52.80  Aligned_cols=57  Identities=19%  Similarity=0.157  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685           56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTS  112 (438)
Q Consensus        56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~  112 (438)
                      +-+...+...+.++....+.+.+..-.+..+..+|+.++..+..|+..+.+++..|=
T Consensus       700 ~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if  756 (1141)
T KOG0018|consen  700 EQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF  756 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566666666666666666666666777777777777777777777776653

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.09  E-value=0.92  Score=52.53  Aligned_cols=154  Identities=17%  Similarity=0.225  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhh-hhh--------------hhhHHHHHHHHHHHH
Q 013685          200 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMC-QRE--------------SQLNNDLRKLAQAVE  264 (438)
Q Consensus       200 Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~-~~~--------------~el~~el~~~~~~Ie  264 (438)
                      .|..+++.+...|..+...+..++..-+.|..|++.|..++.+..-+ .++              +.+.....++...|.
T Consensus       412 nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ik  491 (1195)
T KOG4643|consen  412 NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIK  491 (1195)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666667777777777777777777777888887777632111 111              122233333334444


Q ss_pred             HHHHchhhHHHHHHHHHHHHHHHHHH---------------------HhhccccCcccchhHHHHHHHHHHHHHHHHHHh
Q 013685          265 DLKANLMDKETELQNISEENEMLKLE---------------------ISKRELDTPNMNSNLAAEVEAARSAEKEALMKL  323 (438)
Q Consensus       265 ~Lka~L~~le~~l~~L~eEieeLKsE---------------------I~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~  323 (438)
                      .++..|+.-.-.+.++...+..++.+                     ++.|+.+    |..+...|..-+.- ..-.+-|
T Consensus       492 nlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~E----Na~LlkqI~~Lk~t-~qn~~~L  566 (1195)
T KOG4643|consen  492 NLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEE----NAHLLKQIQSLKTT-SQNGALL  566 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHH-hHHHHHH
Confidence            55555555444445555444444444                     3444433    45555555554443 3344455


Q ss_pred             hhhHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHH
Q 013685          324 GLLMEEADKSNRRAARMAEQLEAAQSANCEAEAEL  358 (438)
Q Consensus       324 ~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~~eae~  358 (438)
                      -+.++..+.-...--.+--.|.|.+.-++-||-+.
T Consensus       567 Eq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~  601 (1195)
T KOG4643|consen  567 EQNNNDLELIHNELKKYIDALNALRRHKEKLEEEI  601 (1195)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777777777778888888888787774

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.08  E-value=0.97  Score=52.63  Aligned_cols=69  Identities=20%  Similarity=0.290  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013685          251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEA  330 (438)
Q Consensus       251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~  330 (438)
                      ++..++..+...|.++..+.+++.....++.....+++..+.           .....+..++.+..+.-..|..+...+
T Consensus       406 elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~-----------~l~~~~~~~~~~~~e~n~eL~~~~~ql  474 (1141)
T KOG0018|consen  406 ELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLD-----------SLESLVSSAEEEPYELNEELVEVLDQL  474 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH-----------HHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            555556666666666666666666666666666666666665           334445555555555555555555554

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.07  E-value=0.34  Score=48.58  Aligned_cols=68  Identities=12%  Similarity=0.172  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           48 ETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        48 ~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      +......+..+......+...|+.|...+.++...+.++..+++++..+|..++.+|..++..|..-.
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~  100 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ  100 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555555555555555555555555555555555555555555555554444333

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=97.06  E-value=0.52  Score=50.06  Aligned_cols=69  Identities=9%  Similarity=0.068  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIA   87 (438)
Q Consensus        19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~   87 (438)
                      .|...+.+|..+...|....++.+.|.+++......+..+..+|-....++..++..|..+...++.+.
T Consensus        39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~  107 (420)
T COG4942          39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE  107 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence            344455555555555555555555555554444444444444444444444444444444444433333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.98  Score=51.12  Aligned_cols=142  Identities=20%  Similarity=0.240  Sum_probs=100.0

Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685          140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL  219 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l  219 (438)
                      .|--+++...-+..++.-|...+..++.++++-....+               -....|.+....++...+++..|++++
T Consensus       431 ~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~t---------------t~kt~ie~~~~q~e~~isei~qlqari  495 (1118)
T KOG1029|consen  431 WIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDIT---------------TQKTEIEEVTKQRELMISEIDQLQARI  495 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccc---------------hHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            44445555666666666666666666666666555222               223345556666667777788888888


Q ss_pred             ccHHHHhhhhHHhhHHHHHHhhhhhh-----hhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685          220 MDKETELQGISEENEGLHMQLDKNLM-----CQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKR  294 (438)
Q Consensus       220 ~d~E~ELq~L~eEre~L~~ei~~~~~-----~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~  294 (438)
                      .+.-..|+.|.-|+-.|...+...++     +.+-.+|.+.+...+--.+.++-++..+..+..+-..+|+.++.++++|
T Consensus       496 kE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkel  575 (1118)
T KOG1029|consen  496 KELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKEL  575 (1118)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            88888899999999999998885544     3345677777777777778888888888888888888888888888766


Q ss_pred             cc
Q 013685          295 EL  296 (438)
Q Consensus       295 ~~  296 (438)
                      -.
T Consensus       576 k~  577 (1118)
T KOG1029|consen  576 KE  577 (1118)
T ss_pred             HH
Confidence            53

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.88  E-value=1.2  Score=50.48  Aligned_cols=110  Identities=17%  Similarity=0.134  Sum_probs=66.0

Q ss_pred             hHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685            6 EAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSS   85 (438)
Q Consensus         6 ~~~~~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~s   85 (438)
                      |+.=......++.|+..++..+.++.+..+-+.....++.++..........+..++...+-.=-.+-.|..+++++.-+
T Consensus        29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis  108 (717)
T PF09730_consen   29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENIS  108 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            34444555666677777777777766666666666666666666666555555555555555555555555555554444


Q ss_pred             HHH----------HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           86 IAS----------ELERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        86 l~~----------ELee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      +..          |.+-++-+|.+|++++.-|+..++...
T Consensus       109 lQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~  148 (717)
T PF09730_consen  109 LQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA  148 (717)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333          344555567777777776666655554

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.77  E-value=1.8  Score=50.99  Aligned_cols=64  Identities=25%  Similarity=0.226  Sum_probs=36.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAE   75 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~e   75 (438)
                      ++..|..---.+...|.+.....+.+...+.+.+-+-+.|+...+....+-+..+...+....+
T Consensus      1409 ~A~~A~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~e 1472 (1758)
T KOG0994|consen 1409 RAGGALLMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRE 1472 (1758)
T ss_pred             ccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555566666666666677777777766666666665555544444444333333333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.71  E-value=0.0091  Score=67.03  Aligned_cols=247  Identities=21%  Similarity=0.198  Sum_probs=28.3

Q ss_pred             hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           13 AESAHLELQSLKGNLIETI---SLMENMKNQLRESKESETQAQALARET---LLQLETAKLSVEALRAEGMKAIEAYSSI   86 (438)
Q Consensus        13 ~E~a~~ELe~lre~L~~~e---~~Ieelr~qL~dl~~e~~~A~~~~eE~---~~qLE~ae~~Ie~le~ei~elee~~~sl   86 (438)
                      .+-+..+..+|+.+|...+   ..+.++..+...|..++..+..+....   ..--+.+...|..++.+-.-+.+.+.++
T Consensus       283 ~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~  362 (722)
T PF05557_consen  283 VELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSL  362 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3344445555555544443   444455556666666666666665432   1223445555666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013685           87 ASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAE  166 (438)
Q Consensus        87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE  166 (438)
                      ..++..+...+..|+.++..+...+..+..+.                .-....+..|.....-+..|++-|+.-|...+
T Consensus       363 ~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~----------------~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd  426 (722)
T PF05557_consen  363 QSELRELEEEIQELEQEKEQLLKEIEELEASL----------------EALKKLIRRLERQKALATKERDYLRAQLKSYD  426 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66777777777777766666666666666421                11133456677777788888888888888877


Q ss_pred             HhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhh
Q 013685          167 TKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMC  246 (438)
Q Consensus       167 ~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~  246 (438)
                      .+..-....                .....++..++.-+...+.-..++...+..++.+|.+.+..+..+..++...  .
T Consensus       427 ~e~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~--~  488 (722)
T PF05557_consen  427 KEETTMNPS----------------EQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSL--K  488 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhccccCc----------------hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhh--h
Confidence            764322210                0112222233333333333333444455666666666666555555554300  0


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685          247 QRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK  293 (438)
Q Consensus       247 ~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~  293 (438)
                      .........+......+..|+..+.+++..+..|..++..|..+|++
T Consensus       489 ~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  489 EQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             -----HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00001111122234556667777778888888888888888888876

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=96.69  E-value=1.4  Score=48.51  Aligned_cols=337  Identities=19%  Similarity=0.231  Sum_probs=184.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Q 013685           11 KNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVE-----------ALRAEGMKA   79 (438)
Q Consensus        11 ~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie-----------~le~ei~el   79 (438)
                      -+.-.+...+..+...|..++..|..+...|+++......-...+..+......++..+-           .++..+..+
T Consensus        94 ~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~i  173 (560)
T PF06160_consen   94 YRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENI  173 (560)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHH
Confidence            344456666777777778888888888888888777777766666665555555555443           333333333


Q ss_pred             HHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHH
Q 013685           80 IEAYSSIA------------SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE  147 (438)
Q Consensus        80 ee~~~sl~------------~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~E  147 (438)
                      +..+....            .-+..++..+..|+..+..+=.-+..+...+                   .+.+.+|..-
T Consensus       174 e~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~-------------------P~ql~eL~~g  234 (560)
T PF06160_consen  174 EEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEF-------------------PDQLEELKEG  234 (560)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-------------------HHHHHHHHHH
Confidence            33322221            1133333333333333333332222222100                   0111111111


Q ss_pred             HH------------hhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHH
Q 013685          148 LS------------SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEEL  215 (438)
Q Consensus       148 ie------------~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeEL  215 (438)
                      +.            .+..+|.+++..|..+...|..+.+          ..+.........+|..+...+++=-..-...
T Consensus       235 y~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l----------~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V  304 (560)
T PF06160_consen  235 YREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLEL----------DEVEEENEEIEERIDQLYDILEKEVEAKKYV  304 (560)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11            2333444444444444444433332          2223333344445555555554444444444


Q ss_pred             HHhhccHHHHhhhhHHhhHHHHHHhhh--------hhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHH
Q 013685          216 KANLMDKETELQGISEENEGLHMQLDK--------NLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEML  287 (438)
Q Consensus       216 ka~l~d~E~ELq~L~eEre~L~~ei~~--------~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeL  287 (438)
                      ......+..-|..+...+..|..++.+        ......-..+...+..+...+..+...+......-..+...+..+
T Consensus       305 ~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~  384 (560)
T PF06160_consen  305 EKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEI  384 (560)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence            445555555555555555555555542        111222236777788888888888888877777777777777777


Q ss_pred             HHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHH---------HHHHHHHHHhhHHHHHHH
Q 013685          288 KLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM---------AEQLEAAQSANCEAEAEL  358 (438)
Q Consensus       288 KsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~---------~e~l~a~~~a~~~~eae~  358 (438)
                      ...+...+..-.    +....+...+..|..|.-+|-.+...+..-.|+..+.         -..+..+...=..+-..|
T Consensus       385 ~~~l~~ie~~q~----~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L  460 (560)
T PF06160_consen  385 EEQLEEIEEEQE----EINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDEL  460 (560)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            777776665522    3444566677888888888888777777777776443         356666666666677788


Q ss_pred             hhhhhchHHHHHHHHHHHHHhc
Q 013685          359 RRLKVQSDQWRKAAEAAASMLS  380 (438)
Q Consensus       359 ~rl~vq~~qwrkaae~aaa~l~  380 (438)
                      .+.++=-+.--+--+.|...+-
T Consensus       461 ~~~pinm~~v~~~l~~a~~~v~  482 (560)
T PF06160_consen  461 NQVPINMDEVNKQLEEAEDDVE  482 (560)
T ss_pred             hcCCcCHHHHHHHHHHHHHHHH
Confidence            7777766665555555554443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.69  E-value=0.23  Score=45.30  Aligned_cols=97  Identities=14%  Similarity=0.229  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhc
Q 013685           56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKEN  135 (438)
Q Consensus        56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~  135 (438)
                      +....+.+.++..+..++.+....+..+.++...+..+..+|..++..+..+...+......                  
T Consensus        10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~------------------   71 (143)
T PF12718_consen   10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR------------------   71 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------------
Confidence            33445555566666666666666677777777777777777777777777777666655520                  


Q ss_pred             ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685          136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG  172 (438)
Q Consensus       136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe  172 (438)
                        .+..-.|+++|.-+..++.+...++..+..++.+.
T Consensus        72 --~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~  106 (143)
T PF12718_consen   72 --KSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREA  106 (143)
T ss_pred             --HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11111456666666666666666665555554443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.67  E-value=0.00043  Score=77.38  Aligned_cols=96  Identities=27%  Similarity=0.369  Sum_probs=0.0

Q ss_pred             chHHHHHHHHhhHHH---HHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHH---HHHHHH
Q 013685          140 ESKHLEEELSSLKSE---VGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQK---AKSDIE  213 (438)
Q Consensus       140 Ei~eL~~Eie~lk~E---I~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~---~~~eLe  213 (438)
                      +...|+.+++.++..   +.+++..++.+..++.+..     .++.....++.....+-+++..|+.++++   ++..|+
T Consensus       292 ~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~-----~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle  366 (713)
T PF05622_consen  292 EARALRDELDELREKADRADKLENEVEKYKKKLEDLE-----DLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLE  366 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            445556666666553   3446666666666665543     45566666666667777777777777666   444555


Q ss_pred             HHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685          214 ELKANLMDKETELQGISEENEGLHMQL  240 (438)
Q Consensus       214 ELka~l~d~E~ELq~L~eEre~L~~ei  240 (438)
                      .++..+.+++.++.....+.+.|..++
T Consensus       367 ~~k~qi~eLe~~l~~~~~~~~~l~~e~  393 (713)
T PF05622_consen  367 EYKKQIQELEQKLSEESRRADKLEFEN  393 (713)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555444444444333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.66  E-value=0.28  Score=44.84  Aligned_cols=94  Identities=17%  Similarity=0.202  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE  101 (438)
Q Consensus        22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE  101 (438)
                      .+...|.++.+.-+.+.+++.-+..+....+.....+..+.+..++.|..+...+..+...++.+..+|+-++.+...|.
T Consensus         7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~   86 (140)
T PF10473_consen    7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD   86 (140)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667778888888888888888888888888888888888888888888888888888888888888888888888887


Q ss_pred             HHHHHHHHHhhhcc
Q 013685          102 GLVSKLEADTSNAN  115 (438)
Q Consensus       102 ~ei~kLe~eI~~~e  115 (438)
                      ..+.+.+..|..++
T Consensus        87 k~lq~~q~kv~eLE  100 (140)
T PF10473_consen   87 KELQKKQEKVSELE  100 (140)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777766666

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.65  E-value=0.00046  Score=77.16  Aligned_cols=100  Identities=19%  Similarity=0.215  Sum_probs=0.0

Q ss_pred             hhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH-------HHHHHHHHH
Q 013685           10 TKNAESAHLELQSLKGNL---IETISLMENMKNQLRESKESETQAQALA-------------RE-------TLLQLETAK   66 (438)
Q Consensus        10 ~~~~E~a~~ELe~lre~L---~~~e~~Ieelr~qL~dl~~e~~~A~~~~-------------eE-------~~~qLE~ae   66 (438)
                      +..+..+.+|++.+|..-   ...+..|+..|.+|.++..=..+....-             ++       +..+++..+
T Consensus       290 A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k  369 (713)
T PF05622_consen  290 AREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYK  369 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            344556666666666643   3345566666666555544333332221             11       344555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           67 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA  109 (438)
Q Consensus        67 ~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~  109 (438)
                      ..|-.+...+......+..+..++..+..++..++.+...+..
T Consensus       370 ~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~  412 (713)
T PF05622_consen  370 KQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQE  412 (713)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666555555555555555555555555555444444433

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.62  E-value=2.1  Score=49.65  Aligned_cols=53  Identities=23%  Similarity=0.263  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685           61 QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN  113 (438)
Q Consensus        61 qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~  113 (438)
                      ++.........+...+.++...+......+..+...+..+...+..++..+..
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~  442 (908)
T COG0419         390 AIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ  442 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444445555555555555555555666666666666665555

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.62  E-value=0.14  Score=46.81  Aligned_cols=87  Identities=30%  Similarity=0.376  Sum_probs=63.0

Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685          140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL  219 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l  219 (438)
                      .+.++..++..++++-+.|++.|..++.++...+.    ....++-+.++.+           +.|..++..|..+-..+
T Consensus         4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~----~~e~~~~daEn~k-----------~eie~L~~el~~lt~el   68 (140)
T PF10473_consen    4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQE----NKECLILDAENSK-----------AEIETLEEELEELTSEL   68 (140)
T ss_pred             HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence            46678889999999999999999999999877666    3334444444433           44556777777777777


Q ss_pred             ccHHHHhhhhHHhhHHHHHHhh
Q 013685          220 MDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       220 ~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      .+++.+|..++.+++.|...+.
T Consensus        69 ~~L~~EL~~l~sEk~~L~k~lq   90 (140)
T PF10473_consen   69 NQLELELDTLRSEKENLDKELQ   90 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777888887777766665554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.57  E-value=0.22  Score=50.98  Aligned_cols=105  Identities=20%  Similarity=0.226  Sum_probs=82.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           11 KNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE----TLLQLETAKLSVEALRAEGMKAIEAYSSI   86 (438)
Q Consensus        11 ~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE----~~~qLE~ae~~Ie~le~ei~elee~~~sl   86 (438)
                      .|.+.+..+...|...+..+...+..++.+...+..++........+    -..+|+.++.+|..+...+......+..+
T Consensus       156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el  235 (325)
T PF08317_consen  156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAEL  235 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677778888888888888888888888888888888888887765    35677777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           87 ASELERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      ..++..+...|..+...+.++..+|..+.
T Consensus       236 ~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  236 QEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777766

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=96.57  E-value=2.9  Score=50.72  Aligned_cols=23  Identities=13%  Similarity=0.081  Sum_probs=9.9

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHH
Q 013685          139 MESKHLEEELSSLKSEVGQLRSA  161 (438)
Q Consensus       139 ~Ei~eL~~Eie~lk~EI~~Les~  161 (438)
                      +..+.+...+...+..+..+...
T Consensus       844 ~~l~~~~~aL~~y~~~l~~l~~~  866 (1353)
T TIGR02680       844 DALEAVGLALKRFGDHLHTLEVA  866 (1353)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.43  E-value=0.95  Score=43.56  Aligned_cols=197  Identities=17%  Similarity=0.214  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           31 ISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD  110 (438)
Q Consensus        31 e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e  110 (438)
                      ...|..++.++.-++.+...++..+.....+|+.+...-....       ..+..+.....+...+++.++..+..... 
T Consensus         3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~e-------r~~Kv~enr~~kdEE~~e~~e~qLkEAk~-   74 (205)
T KOG1003|consen    3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESE-------RGMKVIENRAQKLEEKMEAQEAQLKEAKH-   74 (205)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-
Confidence            4567777888888887777777777666666666655544433       33445555555555555555555444432 


Q ss_pred             hhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHH
Q 013685          111 TSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQI  190 (438)
Q Consensus       111 I~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~  190 (438)
                      |.                      +..+-.+.++-..+.-+.+++.+.+.+.+..++.+.++..                
T Consensus        75 ia----------------------E~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeE----------------  116 (205)
T KOG1003|consen   75 IA----------------------EKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEE----------------  116 (205)
T ss_pred             HH----------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            11                      2224466677777888888888888888877777665444                


Q ss_pred             HhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHch
Q 013685          191 KHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANL  270 (438)
Q Consensus       191 K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L  270 (438)
                                   .+.-+...+.-|..........+-.+..+...|...++       |.+.+++..  .+.|..|.-..
T Consensus       117 -------------e~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk-------EaE~rAE~a--ERsVakLeke~  174 (205)
T KOG1003|consen  117 -------------DLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK-------EAETRAEFA--ERRVAKLEKER  174 (205)
T ss_pred             -------------HHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-------hhhhhHHHH--HHHHHHHcccH
Confidence                         22233333333333333333333333333333333444       334444444  47888888888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcc
Q 013685          271 MDKETELQNISEENEMLKLEISKRE  295 (438)
Q Consensus       271 ~~le~~l~~L~eEieeLKsEI~~~~  295 (438)
                      .+++-.+.....++..+..++.+..
T Consensus       175 DdlE~kl~~~k~ky~~~~~eLD~~~  199 (205)
T KOG1003|consen  175 DDLEEKLEEAKEKYEEAKKELDETL  199 (205)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888877543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.39  E-value=2.3  Score=47.47  Aligned_cols=49  Identities=16%  Similarity=0.188  Sum_probs=30.0

Q ss_pred             hhhhcHHHHHHHHHHHHHHHHHHHHhhccH--HHHhhhhHHhhHHHHHHhh
Q 013685          193 QSGLREVELEAELQKAKSDIEELKANLMDK--ETELQGISEENEGLHMQLD  241 (438)
Q Consensus       193 e~~~ri~Ele~eie~~~~eLeELka~l~d~--E~ELq~L~eEre~L~~ei~  241 (438)
                      ....++..+-.++..++.+|.++...+...  +..++.+.++...+..++.
T Consensus       388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~  438 (650)
T TIGR03185       388 ELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF  438 (650)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence            445667777777777777777777777653  3345555554444444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.37  E-value=0.19  Score=51.39  Aligned_cols=107  Identities=21%  Similarity=0.236  Sum_probs=94.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           10 TKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARET----LLQLETAKLSVEALRAEGMKAIEAYSS   85 (438)
Q Consensus        10 ~~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~----~~qLE~ae~~Ie~le~ei~elee~~~s   85 (438)
                      ..|.+.+..+...|...+..+...+..++.+...|..++.+.....+++    ...|..++..|.....++......+..
T Consensus       150 ~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e  229 (312)
T smart00787      150 DENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE  229 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467778888888999999999999999999999999999999999885    558888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685           86 IASELERSRTRINLLEGLVSKLEADTSNANR  116 (438)
Q Consensus        86 l~~ELee~~~eI~~LE~ei~kLe~eI~~~e~  116 (438)
                      +..+|..+...|......+.++..+|...+.
T Consensus       230 ~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      230 LEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988888874

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.37  E-value=2.3  Score=47.32  Aligned_cols=143  Identities=18%  Similarity=0.274  Sum_probs=77.0

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHH--HHhhhhhcHHHHHHHHHHHHHHHHHHH
Q 013685          139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQ--IKHQSGLREVELEAELQKAKSDIEELK  216 (438)
Q Consensus       139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~--~K~e~~~ri~Ele~eie~~~~eLeELk  216 (438)
                      ++..+.-.+|..++.++..+...+...+..|..+        ...|+.+-.  -.+.+..||-|.-.-|++.+.+|..-=
T Consensus       440 ~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL--------~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl  511 (594)
T PF05667_consen  440 SESKQKLQEIKELREEIKEIEEEIRQKEELYKQL--------VKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKIL  511 (594)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3444455556666666666666655555544433        333443322  245778888888888888888877665


Q ss_pred             HhhccHHHHhhhhHHhhHHHHHHhh----hhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685          217 ANLMDKETELQGISEENEGLHMQLD----KNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  292 (438)
Q Consensus       217 a~l~d~E~ELq~L~eEre~L~~ei~----~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~  292 (438)
                      ..-..+-.++..+.+.-+.==.-..    +..   +-.+.-+..++.=..+...=..|...-..--.+..+|.+|..+|.
T Consensus       512 ~DTr~lQkeiN~l~gkL~RtF~v~dElifrdA---KkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~  588 (594)
T PF05667_consen  512 SDTRELQKEINSLTGKLDRTFTVTDELIFRDA---KKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQID  588 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5555555555554443322111111    111   112344444555455555555555555566666667777776665

>PRK11281 hypothetical protein; Provisional

Probab=96.25  E-value=3.9  Score=48.72  Aligned_cols=136  Identities=18%  Similarity=0.092  Sum_probs=64.7

Q ss_pred             ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHH
Q 013685          136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEEL  215 (438)
Q Consensus       136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeEL  215 (438)
                      +..+....|..|...++.++..++..+........=.+.+.        ..+.........++..+...|...+..-.+.
T Consensus       189 l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~--------d~~~~~~~~~~~~~~~lq~~in~kr~~~se~  260 (1113)
T PRK11281        189 LRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQR--------DYLTARIQRLEHQLQLLQEAINSKRLTLSEK  260 (1113)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455666777777777776666666665544433222221        1111122222222333333333322222222


Q ss_pred             HHhhc---------cHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHH
Q 013685          216 KANLM---------DKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEM  286 (438)
Q Consensus       216 ka~l~---------d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEiee  286 (438)
                      .....         ..-.-++...+.|-.|...+.         .+-.++..+..+-.+.+..+..+......+.++++-
T Consensus       261 ~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~---------~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~  331 (1113)
T PRK11281        261 TVQEAQSQDEAARIQANPLVAQELEINLQLSQRLL---------KATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISV  331 (1113)
T ss_pred             HHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111         111225555666767766666         455555555555556666666666666666666554


Q ss_pred             HH
Q 013685          287 LK  288 (438)
Q Consensus       287 LK  288 (438)
                      |+
T Consensus       332 l~  333 (1113)
T PRK11281        332 LK  333 (1113)
T ss_pred             hc
Confidence            43

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.22  E-value=2.7  Score=46.61  Aligned_cols=130  Identities=28%  Similarity=0.304  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 013685           58 TLLQLETAKLSVEALRAEGMKAIE------------------AYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLS  119 (438)
Q Consensus        58 ~~~qLE~ae~~Ie~le~ei~elee------------------~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~  119 (438)
                      +..+++.++..|..+.+.+.....                  ++.-+-.+|+.-..+|..|+.++..|...+.....+..
T Consensus       194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~  273 (629)
T KOG0963|consen  194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK  273 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            566666666666666554443322                  33334445666666777777777777665554442110


Q ss_pred             cCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHH
Q 013685          120 QNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREV  199 (438)
Q Consensus       120 ~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~  199 (438)
                                     ....+.+..+..-+.+...+|.+|-..|+..++-+.++                  ...+...|.
T Consensus       274 ---------------~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e------------------~e~~~~qI~  320 (629)
T KOG0963|consen  274 ---------------LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEE------------------REKHKAQIS  320 (629)
T ss_pred             ---------------hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Confidence                           00134555555666666666666665555555544443                  334455555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 013685          200 ELEAELQKAKSDIEELKANLM  220 (438)
Q Consensus       200 Ele~eie~~~~eLeELka~l~  220 (438)
                      .++.+++.+...|++++..+-
T Consensus       321 ~le~~l~~~~~~leel~~kL~  341 (629)
T KOG0963|consen  321 ALEKELKAKISELEELKEKLN  341 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            566666666666666555443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=96.22  E-value=3.6  Score=47.98  Aligned_cols=161  Identities=17%  Similarity=0.166  Sum_probs=91.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 013685           13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIE---AYSSIASE   89 (438)
Q Consensus        13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee---~~~sl~~E   89 (438)
                      |..+..-+..|+++|.+--..+-.+++.|++++.++.+....+.+.+..-..+...++.+..-...++.   .|..--.+
T Consensus       179 lAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmD  258 (1195)
T KOG4643|consen  179 LADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMD  258 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhh
Confidence            445555556666666666666666667777777777666666666666666666666655555544443   23333333


Q ss_pred             HHHHHHHHHHHHHH-------HHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685           90 LERSRTRINLLEGL-------VSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL  162 (438)
Q Consensus        90 Lee~~~eI~~LE~e-------i~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I  162 (438)
                      ++-.++++..|..+       -.=|+..|.++.+-   .           +..-.+++|.+++..+.-++.+..-.+..+
T Consensus       259 s~fykdRveelkedN~vLleekeMLeeQLq~lrar---s-----------e~~tleseiiqlkqkl~dm~~erdtdr~kt  324 (1195)
T KOG4643|consen  259 SDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRAR---S-----------EGATLESEIIQLKQKLDDMRSERDTDRHKT  324 (1195)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc---c-----------ccCChHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            44444444444443       33444555555531   0           001236788888888888888888888877


Q ss_pred             HHHHHhhhhhhhhcHHHHHHHHHHHH
Q 013685          163 EIAETKLNEGQIQSTVKIKSAFEQLE  188 (438)
Q Consensus       163 e~aE~riqEe~~e~~~elr~a~E~le  188 (438)
                      +.+--+..-++.+. ..|...++.++
T Consensus       325 eeL~eEnstLq~q~-eqL~~~~ellq  349 (1195)
T KOG4643|consen  325 EELHEENSTLQVQK-EQLDGQMELLQ  349 (1195)
T ss_pred             HHHHHHHHHHHHHH-HHhhhhhhHhh
Confidence            76666655554433 24444444433

>PRK09039 hypothetical protein; Validated

Probab=96.21  E-value=0.9  Score=47.03  Aligned_cols=21  Identities=24%  Similarity=0.267  Sum_probs=9.1

Q ss_pred             HHHHhhhhhcHHHHHHHHHHH
Q 013685          188 EQIKHQSGLREVELEAELQKA  208 (438)
Q Consensus       188 e~~K~e~~~ri~Ele~eie~~  208 (438)
                      +....+...+|..+...|...
T Consensus       164 e~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        164 EKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.14  E-value=3.4  Score=47.13  Aligned_cols=114  Identities=13%  Similarity=0.143  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 013685           38 KNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRN  117 (438)
Q Consensus        38 r~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~  117 (438)
                      ..++..++.++.-.+....++..++-.+..+|..++.++.+.+-+++.+..++.....++.....+|--+..++.+..  
T Consensus        98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~--  175 (1265)
T KOG0976|consen   98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKN--  175 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--
Confidence            333444444444444444445555555555555555555555555555555555555554444444444444444433  


Q ss_pred             cccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685          118 LSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~  174 (438)
                                           .+++.+..++.-.-+++.++..+++..-.++.+..+
T Consensus       176 ---------------------~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~  211 (1265)
T KOG0976|consen  176 ---------------------EELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLI  211 (1265)
T ss_pred             ---------------------hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                                 466777777777777777777777766666655444

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.05  E-value=3.6  Score=47.12  Aligned_cols=92  Identities=21%  Similarity=0.312  Sum_probs=74.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHH
Q 013685          197 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE  276 (438)
Q Consensus       197 ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~  276 (438)
                      ++.+.+..|..++..|.-++..-.-.+++|+....-++.|...+.         .++.++..+...|..|...|..-+.-
T Consensus       625 qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~---------~~e~E~~~l~~Ki~~Le~Ele~er~~  695 (769)
T PF05911_consen  625 QLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK---------DLEAEAEELQSKISSLEEELEKERAL  695 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            446677778888888888888888888999998888888888887         77888888888888888888777777


Q ss_pred             HHHHHHHHHHHHHHHhhcccc
Q 013685          277 LQNISEENEMLKLEISKRELD  297 (438)
Q Consensus       277 l~~L~eEieeLKsEI~~~~~~  297 (438)
                      -+.+......|..++..+..+
T Consensus       696 ~~e~~~kc~~Le~el~r~~~~  716 (769)
T PF05911_consen  696 SEELEAKCRELEEELERMKKE  716 (769)
T ss_pred             chhhhhHHHHHHHHHHhhhcc
Confidence            777777777888888777655

The function of this family is unknown.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=95.99  E-value=0.49  Score=49.44  Aligned_cols=130  Identities=13%  Similarity=0.160  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE----TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS   93 (438)
Q Consensus        18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE----~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~   93 (438)
                      .-++..+.-...+...+.+++.+|..+..++...+..+..    +-.|++.+-.........+.++.+.|+....-+...
T Consensus       220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~  299 (359)
T PF10498_consen  220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSER  299 (359)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3345555555566666667777777777777777666622    667888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHH
Q 013685           94 RTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEI  164 (438)
Q Consensus        94 ~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~  164 (438)
                      ...++.+.++++.+..+|...+.+.        -|         ++....|+.-|..++.||.++.=+|-.
T Consensus       300 t~~L~~IseeLe~vK~emeerg~~m--------tD---------~sPlv~IKqAl~kLk~EI~qMdvrIGV  353 (359)
T PF10498_consen  300 TRELAEISEELEQVKQEMEERGSSM--------TD---------GSPLVKIKQALTKLKQEIKQMDVRIGV  353 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC--------CC---------CCHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence            9999999999999999999999632        11         344558888888888888887666543

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.94  E-value=1.8  Score=42.07  Aligned_cols=193  Identities=17%  Similarity=0.161  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           29 ETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE  108 (438)
Q Consensus        29 ~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe  108 (438)
                      +.+..|..++..+.....+.......++++.........-|+.++..+..+..+....   -......|..+-.+...+.
T Consensus         6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~---~~~~~~~i~~~~~erdq~~   82 (207)
T PF05010_consen    6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ---KELSEAEIQKLLKERDQAY   82 (207)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHhhHHHHH
Confidence            4566677777777777766777777777777777777777777777777766654333   3444566777777777777


Q ss_pred             HHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHH
Q 013685          109 ADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLE  188 (438)
Q Consensus       109 ~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le  188 (438)
                      .++.+++.+|+                ..-..+..++.-|+..+..-.-|+..+.....++....-.-..=..-+-+.|+
T Consensus        83 ~dL~s~E~sfs----------------dl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~  146 (207)
T PF05010_consen   83 ADLNSLEKSFS----------------DLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLE  146 (207)
T ss_pred             HHHHHHHhhHH----------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777775331                01123333444444444444444444444444444333222212222334445


Q ss_pred             HHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685          189 QIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQL  240 (438)
Q Consensus       189 ~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei  240 (438)
                      ....++.+-...+.+++..+++.|-...-.+.-++..|..-..+|+.|-.-+
T Consensus       147 ~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkIC  198 (207)
T PF05010_consen  147 KANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKIC  198 (207)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555554443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.94  E-value=2.1  Score=42.99  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA  109 (438)
Q Consensus        34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~  109 (438)
                      |..--..++.+..+...++..++.+..+++.+-..+..+..++.+....+..+..+++.++.+|......+.+==.
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR  108 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR  108 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555555555555555555555555666666666666666666666666676666655544333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=3.5  Score=45.34  Aligned_cols=80  Identities=20%  Similarity=0.274  Sum_probs=58.5

Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhh-hHHHHHHHHHHHHHHHHchhh
Q 013685          194 SGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQ-LNNDLRKLAQAVEDLKANLMD  272 (438)
Q Consensus       194 ~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~e-l~~el~~~~~~Ie~Lka~L~~  272 (438)
                      ....-+..+.+--+++++|-+.|-+...+=.+-.+|-++|=.|+..+..-..++-||+ +++++..+...++-++.++.+
T Consensus       140 ~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee  219 (772)
T KOG0999|consen  140 LKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEE  219 (772)
T ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333445566666788888888888888888888888888888888776556666665 777888888777777776665


Q ss_pred             H
Q 013685          273 K  273 (438)
Q Consensus       273 l  273 (438)
                      .
T Consensus       220 ~  220 (772)
T KOG0999|consen  220 A  220 (772)
T ss_pred             H
Confidence            3

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.89  E-value=3.6  Score=45.25  Aligned_cols=48  Identities=15%  Similarity=0.183  Sum_probs=40.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 013685          250 SQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELD  297 (438)
Q Consensus       250 ~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~  297 (438)
                      +-+..-++.....+......+++++..+..+..-|+++.+.++.++.+
T Consensus       421 ~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~e  468 (581)
T KOG0995|consen  421 PLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELE  468 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677788888888888899999999999999999999888877755

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.87  E-value=1.8  Score=41.59  Aligned_cols=127  Identities=22%  Similarity=0.247  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHH
Q 013685           78 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQ  157 (438)
Q Consensus        78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~  157 (438)
                      .+-..+..+..|++.++.-+..|++.-..|-+.-..++.                       ++-.|..+|..+..+-..
T Consensus        57 qal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEk-----------------------E~q~L~~~i~~Lqeen~k  113 (193)
T PF14662_consen   57 QALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEK-----------------------EQQSLVAEIETLQEENGK  113 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHhH
Confidence            333444455555555555555555555555554444442                       333444444444444444


Q ss_pred             HHHHHHHHHHhhhhhhhhcH---HHH---HHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhh
Q 013685          158 LRSALEIAETKLNEGQIQST---VKI---KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQ  227 (438)
Q Consensus       158 Les~Ie~aE~riqEe~~e~~---~el---r~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq  227 (438)
                      +-.-.+-.-.++.++.....   .++   ...+-+.+..-++...+|.++...|.....-..+|+.....+|..|.
T Consensus       114 l~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~  189 (193)
T PF14662_consen  114 LLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS  189 (193)
T ss_pred             HHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444433222   122   22333445566677888888888888888888888888877777664

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=95.87  E-value=4.1  Score=45.74  Aligned_cols=157  Identities=15%  Similarity=0.238  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccc
Q 013685           58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQD  137 (438)
Q Consensus        58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~  137 (438)
                      ...|++.++.+++.-.-.-.++-..++.+..+=.++..+....--++.+++.+|.+...                     
T Consensus       469 yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~---------------------  527 (786)
T PF05483_consen  469 YSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKK---------------------  527 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---------------------
Confidence            44555555555544333334444455555555555555555555555555555555542                     


Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA  217 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka  217 (438)
                        .-..+..+|+.+...=.+|+.-++.+..++..-..    ++.+-...-+..-....-.+......|+-++..+..|+.
T Consensus       528 --qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~----Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrK  601 (786)
T PF05483_consen  528 --QEEKMLKQIENLEETNTQLRNELESVKEELKQKGE----EVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRK  601 (786)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence              01123334444444444444444433332221111    111111111111111122233344556666667777777


Q ss_pred             hhccHHHHhhhhHHhhHHHHHHhh
Q 013685          218 NLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       218 ~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      .+..+..-+..|..+|..|+..+.
T Consensus       602 qvEnk~K~ieeLqqeNk~LKKk~~  625 (786)
T PF05483_consen  602 QVENKNKNIEELQQENKALKKKIT  625 (786)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHH
Confidence            777777778888888988888887

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.85  E-value=3.8  Score=45.14  Aligned_cols=55  Identities=18%  Similarity=0.396  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhh
Q 013685          179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN  233 (438)
Q Consensus       179 elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEr  233 (438)
                      .+...|..+.........--+.+...++.+...|........++...|++|..+=
T Consensus       355 ~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE  409 (560)
T PF06160_consen  355 ELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDE  409 (560)
T ss_pred             HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444555555555555555555555544444444433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.80  E-value=3.3  Score=47.24  Aligned_cols=141  Identities=18%  Similarity=0.233  Sum_probs=63.2

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHH
Q 013685          146 EELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETE  225 (438)
Q Consensus       146 ~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~E  225 (438)
                      .++..+..+...+....+.+..+++.-..-. ...+......+..+......... +..+-+..-.+.++..++-+...+
T Consensus       737 eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~-es~k~~~~~a~~~~~~~~~~~~~-qeqv~El~~~l~e~~~~l~~~q~e  814 (970)
T KOG0946|consen  737 EELNAALSENKKLENDQELLTKELNKKNADI-ESFKATQRSAELSQGSLNDNLGD-QEQVIELLKNLSEESTRLQELQSE  814 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHhhhhcccchhhhhhhh-HHHHHHHHHhhhhhhhHHHHHHHH
Confidence            4566667777777766666666654322210 11222222222222221111111 112222222266666666667777


Q ss_pred             hhhhHHhhHHHHHHhhh---hhhhh--hhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHH
Q 013685          226 LQGISEENEGLHMQLDK---NLMCQ--RESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLK  288 (438)
Q Consensus       226 Lq~L~eEre~L~~ei~~---~~~~~--~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLK  288 (438)
                      ++.++++...+...+..   +.+.+  .+..+-.+......++..+..++.....-...+.+++..|+
T Consensus       815 ~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~  882 (970)
T KOG0946|consen  815 LTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE  882 (970)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence            77777777777666651   11111  22333444444444444444444444444444444444443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.79  E-value=4.3  Score=45.30  Aligned_cols=81  Identities=7%  Similarity=0.045  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           35 ENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSI----ASELERSRTRINLLEGLVSKLEAD  110 (438)
Q Consensus        35 eelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl----~~ELee~~~eI~~LE~ei~kLe~e  110 (438)
                      ..+..++.+++..+......++.+..++..+...++.+...+..+...+.+.    ..+.++++.++..++..+......
T Consensus       205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~  284 (650)
T TIGR03185       205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ  284 (650)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555555554444332    223445566666666666666666


Q ss_pred             hhhcc
Q 013685          111 TSNAN  115 (438)
Q Consensus       111 I~~~e  115 (438)
                      +...-
T Consensus       285 l~~l~  289 (650)
T TIGR03185       285 LRELA  289 (650)
T ss_pred             HHHHh
Confidence            65555

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.78  E-value=0.043  Score=52.04  Aligned_cols=93  Identities=27%  Similarity=0.318  Sum_probs=55.0

Q ss_pred             HHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 013685          188 EQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLK  267 (438)
Q Consensus       188 e~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lk  267 (438)
                      -+.+.+..+++..+..++..++..+......+.++..++..|..+...|..+|.         +..+-+..+.+++..|.
T Consensus        87 ~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~---------ek~k~~e~l~DE~~~L~  157 (194)
T PF08614_consen   87 YRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELK---------EKNKANEILQDELQALQ  157 (194)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence            345777788888888888888888888888888888888888888888888888         77788888888888888


Q ss_pred             HchhhHHHHHHHHHHHHHHHHH
Q 013685          268 ANLMDKETELQNISEENEMLKL  289 (438)
Q Consensus       268 a~L~~le~~l~~L~eEieeLKs  289 (438)
                      ..++.++.++..+..+|..|=.
T Consensus       158 l~~~~~e~k~~~l~~En~~Lv~  179 (194)
T PF08614_consen  158 LQLNMLEEKLRKLEEENRELVE  179 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888743

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PLN02939 transferase, transferring glycosyl groups

Probab=95.78  E-value=5.6  Score=46.63  Aligned_cols=269  Identities=16%  Similarity=0.211  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           27 LIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSK  106 (438)
Q Consensus        27 L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~k  106 (438)
                      +.+.-.-|.+..+.+=-|...+-+|+..++.++.+-+.+...|.-|+-.+.+....+. +..   +-+..+.-+++.+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~  205 (977)
T PLN02939        130 LEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIK-LAA---QEKIHVEILEEQLEK  205 (977)
T ss_pred             HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhh-hhh---hccccchhhHHHHHH
Confidence            4455556666666666777778888888899999999999999988888887643332 221   244456678899999


Q ss_pred             HHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHH
Q 013685          107 LEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQ  186 (438)
Q Consensus       107 Le~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~  186 (438)
                      |..++...+.+.                   ++-..-|..++..+|.|--.|+..|+.+..++.+-.     ++...+-.
T Consensus       206 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  261 (977)
T PLN02939        206 LRNELLIRGATE-------------------GLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVA-----ETEERVFK  261 (977)
T ss_pred             Hhhhhhcccccc-------------------ccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----hhhHHHHH
Confidence            999988888522                   222333667788888888888888888887776542     23333444


Q ss_pred             HHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh----hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Q 013685          187 LEQIKHQSGLREVELEAELQKAKSDIEELKAN----LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQA  262 (438)
Q Consensus       187 le~~K~e~~~ri~Ele~eie~~~~eLeELka~----l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~  262 (438)
                      ++...+-+..-+.+|+..+-....++-+|.--    +.++-.-||.|-+.--.--...-  +-.++-.+|+.+++++...
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  339 (977)
T PLN02939        262 LEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAA--LVLDQNQDLRDKVDKLEAS  339 (977)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccchHHHHHHHHHHHH
Confidence            55555556666666666666666666555433    44444444443332211111110  1112223666677766666


Q ss_pred             HHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 013685          263 VEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKS  333 (438)
Q Consensus       263 Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~  333 (438)
                      +.+.......-+ .++-+..++.-++.-+.       .-..+.-+.++.-.+-.++-...|+.+.+|-.++
T Consensus       340 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (977)
T PLN02939        340 LKEANVSKFSSY-KVELLQQKLKLLEERLQ-------ASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKR  402 (977)
T ss_pred             HHHhhHhhhhHH-HHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            655544322111 11222233333333332       3344566666666666677777777888777665

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.71  E-value=6.4  Score=46.79  Aligned_cols=46  Identities=15%  Similarity=0.203  Sum_probs=29.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685          247 QRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  292 (438)
Q Consensus       247 ~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~  292 (438)
                      ++...++...+.....+-.|...|...-.....+..++.....++.
T Consensus       742 ~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~~~~  787 (1317)
T KOG0612|consen  742 EKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQEVN  787 (1317)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHhhc
Confidence            4555677777777777777777776666666666666554444444

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=95.71  E-value=6.8  Score=47.02  Aligned_cols=46  Identities=15%  Similarity=0.131  Sum_probs=23.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARE   57 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE   57 (438)
                      |...+-..-.+++.++.....+|+.-+.+.+.|+.++....+.+++
T Consensus       210 ~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~e  255 (1294)
T KOG0962|consen  210 HLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEE  255 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3444444444555555555555555555555555555555555544

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.59  E-value=5.7  Score=45.34  Aligned_cols=99  Identities=22%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHh---hhhhcHHHHHHHHHHHHHHHHHH
Q 013685          139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH---QSGLREVELEAELQKAKSDIEEL  215 (438)
Q Consensus       139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~---e~~~ri~Ele~eie~~~~eLeEL  215 (438)
                      .+|..++..++-..++|.+|..+|...-..+.-+-.++    ...-.++.++..   .-.+|.++|++.....+.-...+
T Consensus       472 t~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek----q~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~i  547 (1118)
T KOG1029|consen  472 TEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK----QELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAI  547 (1118)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence            46667777777777778777777776666555544433    333334444444   34556777887777777777777


Q ss_pred             HHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          216 KANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       216 ka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      +..+.+++.|...-..+.+.++..++
T Consensus       548 kdqldelskE~esk~~eidi~n~qlk  573 (1118)
T KOG1029|consen  548 KDQLDELSKETESKLNEIDIFNNQLK  573 (1118)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            77777777776666666666555555

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.56  E-value=3.4  Score=42.47  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           59 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEG  102 (438)
Q Consensus        59 ~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~  102 (438)
                      ..++......+..++..+..+...+..+...+...+..+...+.
T Consensus       136 ~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~  179 (423)
T TIGR01843       136 ESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE  179 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.54  E-value=1.3  Score=50.49  Aligned_cols=135  Identities=19%  Similarity=0.249  Sum_probs=81.9

Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHH-HHHHHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAEL-QKAKSDIEELK  216 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~ei-e~~~~eLeELk  216 (438)
                      +.|..-|+.+++..-..---++.++--+|+-+.+.-.    +++.       .+.+..++|.+.-..+ ...+..-.+|.
T Consensus        23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~----qlr~-------~ree~eq~i~~~~~~~s~e~e~~~~~le   91 (769)
T PF05911_consen   23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMR----QLRQ-------VREEQEQKIHEAVAKKSKEWEKIKSELE   91 (769)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHH----HHHH-------hhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3444455555555444444445555555555444433    4444       4445555555544443 34444445667


Q ss_pred             HhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685          217 ANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  292 (438)
Q Consensus       217 a~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~  292 (438)
                      ..+.++...|..+..+|..|...+.         +-.+-+..+...-....+.+.++..+++.+.-+|..|+-++.
T Consensus        92 ~~l~e~~~~l~~~~~e~~~l~~~l~---------~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~  158 (769)
T PF05911_consen   92 AKLAELSKRLAESAAENSALSKALQ---------EKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH  158 (769)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHH---------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888888888776         444445555555556666666777777777777777777775

The function of this family is unknown.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=95.53  E-value=4.6  Score=43.92  Aligned_cols=143  Identities=19%  Similarity=0.244  Sum_probs=80.1

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHH---HHHHHHHHHHHHHH
Q 013685          139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVEL---EAELQKAKSDIEEL  215 (438)
Q Consensus       139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~El---e~eie~~~~eLeEL  215 (438)
                      -+.++|+.+...++.+|..|+..|.....++++...+...    ..+....-...+...+...   +.++.-+..++.-+
T Consensus       274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~  349 (511)
T PF09787_consen  274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEG----EQESFREQPQELSQQLEPELTTEAELRLYYQELYHY  349 (511)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999888774442    2222222222222222111   44444444444443


Q ss_pred             HH-----------hhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHH
Q 013685          216 KA-----------NLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEEN  284 (438)
Q Consensus       216 ka-----------~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEi  284 (438)
                      +.           ++.++++|++.|+..       +....+.....+++..+..+-..+-.-...|..+..+...|.-.+
T Consensus       350 ~ee~~~~~s~~~~k~~~ke~E~q~lr~~-------l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lql  422 (511)
T PF09787_consen  350 REELSRQKSPLQLKLKEKESEIQKLRNQ-------LSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQL  422 (511)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHH-------HHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccH
Confidence            33           444555555554443       332222223346666665555554444555555555555555555


Q ss_pred             HHHHHHHh
Q 013685          285 EMLKLEIS  292 (438)
Q Consensus       285 eeLKsEI~  292 (438)
                      +-+..++.
T Consensus       423 Erl~~~l~  430 (511)
T PF09787_consen  423 ERLETQLK  430 (511)
T ss_pred             HHHHHHHH
Confidence            55554444

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=95.49  E-value=2.6  Score=40.70  Aligned_cols=91  Identities=15%  Similarity=0.125  Sum_probs=54.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 013685           13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGM-------KAIEAYSS   85 (438)
Q Consensus        13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~-------elee~~~s   85 (438)
                      ..++.-.++.|.+.+++....+..+..+|.++...-......+--+..+.-..+..++.++..+.       +....|..
T Consensus         6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eE   85 (205)
T KOG1003|consen    6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEE   85 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788999999999999999999999988877665444442222222233333444444433       33445555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013685           86 IASELERSRTRINLLEGL  103 (438)
Q Consensus        86 l~~ELee~~~eI~~LE~e  103 (438)
                      +.-.|.=+.+++.+.+..
T Consensus        86 VarkL~iiE~dLE~~eer  103 (205)
T KOG1003|consen   86 VARKLVIIEGELERAEER  103 (205)
T ss_pred             HHHHHHHHHhHHHHHHHH
Confidence            555555555554444433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=95.37  E-value=1.4  Score=42.41  Aligned_cols=100  Identities=27%  Similarity=0.342  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHH---HHHHHHHHHchhhHH
Q 013685          198 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKL---AQAVEDLKANLMDKE  274 (438)
Q Consensus       198 i~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~---~~~Ie~Lka~L~~le  274 (438)
                      ...+=.-|++++.+|++++......+..+.++..+|..|..-+.+...-.  .+|+..+...   ...+..+++++..++
T Consensus        22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~--~eL~k~L~~y~kdK~~L~~~k~rl~~~e   99 (201)
T PF13851_consen   22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEV--EELRKQLKNYEKDKQSLQNLKARLKELE   99 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566678888888999999888888888888888888888887211111  1333333322   235567888999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCc
Q 013685          275 TELQNISEENEMLKLEISKRELDTP  299 (438)
Q Consensus       275 ~~l~~L~eEieeLKsEI~~~~~~~~  299 (438)
                      ..+..|.|+.+.|...+.+.+.++.
T Consensus       100 k~l~~Lk~e~evL~qr~~kle~Erd  124 (201)
T PF13851_consen  100 KELKDLKWEHEVLEQRFEKLEQERD  124 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988777733

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=95.32  E-value=8.3  Score=45.98  Aligned_cols=136  Identities=16%  Similarity=0.179  Sum_probs=64.2

Q ss_pred             ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH------HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHH
Q 013685          136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST------VKIKSAFEQLEQIKHQSGLREVELEAELQKAK  209 (438)
Q Consensus       136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~------~elr~a~E~le~~K~e~~~ri~Ele~eie~~~  209 (438)
                      +.......|..+...++..+..++..+.....+..=.+.+..      ..+...+..+++..+..+...++  ..++...
T Consensus       170 l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se--~~~~~~~  247 (1109)
T PRK10929        170 LAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAE--RALESTE  247 (1109)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            445556677777777777777777777766666544333322      22222223333333322222222  1222222


Q ss_pred             HHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHH
Q 013685          210 SDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEM  286 (438)
Q Consensus       210 ~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEiee  286 (438)
                      ...    +...+.-.-++...+.|..|...+.         ..-.+...+..+-...+..+.....+...+.+++.-
T Consensus       248 ~~~----~~~~~~~~~i~~~~~~N~~Ls~~L~---------~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~  311 (1109)
T PRK10929        248 LLA----EQSGDLPKSIVAQFKINRELSQALN---------QQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQW  311 (1109)
T ss_pred             HhH----HhhccCChHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111    1111222235555666777777766         334444444444444455555555555555444433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=95.32  E-value=0.48  Score=46.83  Aligned_cols=128  Identities=25%  Similarity=0.330  Sum_probs=74.4

Q ss_pred             HHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 013685          185 EQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVE  264 (438)
Q Consensus       185 E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie  264 (438)
                      +.+++.+.++..+...++.+.+.....|.+-...-..++.+++.+..+...|.....                .+...+.
T Consensus         1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~----------------eaee~~~   64 (246)
T PF00769_consen    1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQ----------------EAEEEKQ   64 (246)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH
Confidence            356677778888888888888888888888888888888888877777765554443                3333444


Q ss_pred             HHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHH
Q 013685          265 DLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQL  344 (438)
Q Consensus       265 ~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l  344 (438)
                      +|.............|..++..+...                                +..|.++..+....+.++..+|
T Consensus        65 rL~~~~~~~~eEk~~Le~e~~e~~~~--------------------------------i~~l~ee~~~ke~Ea~~lq~el  112 (246)
T PF00769_consen   65 RLEEEAEMQEEEKEQLEQELREAEAE--------------------------------IARLEEESERKEEEAEELQEEL  112 (246)
T ss_dssp             HHHH------------HHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444343333333333                                3344555556666677788888


Q ss_pred             HHHHHhhHHHHHHHhh
Q 013685          345 EAAQSANCEAEAELRR  360 (438)
Q Consensus       345 ~a~~~a~~~~eae~~r  360 (438)
                      ..|+.+....-.+|.-
T Consensus       113 ~~ar~~~~~ak~~L~~  128 (246)
T PF00769_consen  113 EEAREDEEEAKEELLE  128 (246)
T ss_dssp             HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8877776666666533

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=95.26  E-value=6.8  Score=44.17  Aligned_cols=146  Identities=16%  Similarity=0.157  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccc
Q 013685           65 AKLSVEALRAEGMKAIEAYSSIASELERSRTRI-------NLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQD  137 (438)
Q Consensus        65 ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI-------~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~  137 (438)
                      ...-|..|-++|+++-...---..-+-++++.+       ..+.+.|.+|+.+..++..         ++..+...+.+.
T Consensus       451 kdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~---------il~~Kee~Ek~~  521 (961)
T KOG4673|consen  451 KDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKS---------ILRDKEETEKLL  521 (961)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH---------HhhhHHHHHHHH
Confidence            344455555555555433222222233333333       3333455555555555552         344444555666


Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHH--HH--HhhhhhcHHHHHHHHHHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLE--QI--KHQSGLREVELEAELQKAKSDIE  213 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le--~~--K~e~~~ri~Ele~eie~~~~eLe  213 (438)
                      -.-|-.+++++.+.+...+.++..+++++.+.-.++.    -+..+|-++.  ++  ..+..++...+--++..++..|-
T Consensus       522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qa----t~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~  597 (961)
T KOG4673|consen  522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQA----TNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLS  597 (961)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----hhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777788888888877777777665554    3333443331  11  12455555555555555555554


Q ss_pred             HHHHhhccHH
Q 013685          214 ELKANLMDKE  223 (438)
Q Consensus       214 ELka~l~d~E  223 (438)
                      .........|
T Consensus       598 ~~Eq~aarrE  607 (961)
T KOG4673|consen  598 KKEQQAARRE  607 (961)
T ss_pred             HHHHHHHHHH
Confidence            4444443333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.98  E-value=5.2  Score=41.33  Aligned_cols=166  Identities=16%  Similarity=0.136  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHH
Q 013685           64 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKH  143 (438)
Q Consensus        64 ~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~e  143 (438)
                      .....|--+..+++.-+.++.....-.++++.+-..+.....++.-....-+.      +......   .-.-...-+.+
T Consensus         6 SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d------~~~~~~~---~~~~La~lL~~   76 (319)
T PF09789_consen    6 SKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGD------PSIPPEK---ENKNLAQLLSE   76 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC------ccCCccc---chhhHHHHHHH
Confidence            33344444555555555555555555555555555555555544432221111      1000000   00011122233


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHH
Q 013685          144 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKE  223 (438)
Q Consensus       144 L~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E  223 (438)
                      .+.+-..+..||..|+.+|..+.+++.=+..... +.+.....+.- ...+ ..-+.+-.+|++++..+..|.-.+...-
T Consensus        77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la-~~r~~~~~~~~-~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~l  153 (319)
T PF09789_consen   77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA-RQRVGDEGIGA-RHFP-HEREDLVEQLEKLREQIEQLERDLQSLL  153 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH-hhhhhhccccc-cccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555554332222110 11111111110 1111 2334455556666666666666666666


Q ss_pred             HHhhhhHHhhHHHHHHhh
Q 013685          224 TELQGISEENEGLHMQLD  241 (438)
Q Consensus       224 ~ELq~L~eEre~L~~ei~  241 (438)
                      +|.+++.-||+..+.+..
T Consensus       154 DEkeEl~~ERD~yk~K~~  171 (319)
T PF09789_consen  154 DEKEELVTERDAYKCKAH  171 (319)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666655555544

>smart00787 Spc7 Spc7 kinetochore protein

Probab=94.92  E-value=5.3  Score=41.06  Aligned_cols=30  Identities=20%  Similarity=0.238  Sum_probs=17.8

Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAET  167 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~  167 (438)
                      ++-.|.|......++.++..|+..-...+.
T Consensus       171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~  200 (312)
T smart00787      171 NSIKPKLRDRKDALEEELRQLKQLEDELED  200 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            445566666666666666666655554433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.89  E-value=5.3  Score=41.01  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=51.2

Q ss_pred             HhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHch
Q 013685          191 KHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANL  270 (438)
Q Consensus       191 K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L  270 (438)
                      ...+...++.-..+......+|.-|-+.+.++...++.+.-|++.|..-+.....+++  .|..++..++++..++-+.|
T Consensus       215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~--~L~aEL~elqdkY~E~~~mL  292 (306)
T PF04849_consen  215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQR--QLQAELQELQDKYAECMAML  292 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444555677778888888888888888888888888887762222222  45555555555555555444


Q ss_pred             hhHHHH
Q 013685          271 MDKETE  276 (438)
Q Consensus       271 ~~le~~  276 (438)
                      ..-...
T Consensus       293 ~EaQEE  298 (306)
T PF04849_consen  293 HEAQEE  298 (306)
T ss_pred             HHHHHH
Confidence            443333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF13514 AAA_27: AAA domain

Probab=94.85  E-value=11  Score=44.65  Aligned_cols=53  Identities=13%  Similarity=0.174  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHH
Q 013685          254 NDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLA  306 (438)
Q Consensus       254 ~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~  306 (438)
                      ..+.........+...+..+..+++.+...+..+..++........-++++.+
T Consensus       452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l  504 (1111)
T PF13514_consen  452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEEL  504 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence            44555666666777777777777777777777777788777777667777744

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=94.82  E-value=10  Score=44.00  Aligned_cols=26  Identities=19%  Similarity=0.279  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhh
Q 013685          336 RAARMAEQLEAAQSANCEAEAELRRL  361 (438)
Q Consensus       336 ~~~~~~e~l~a~~~a~~~~eae~~rl  361 (438)
                      +...+..++...+.--..++..+..+
T Consensus       594 ~~~~~~~~~~~l~~~~~~l~~~~~~~  619 (908)
T COG0419         594 RLKELKKKLKELEERLSQLEELLQSL  619 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333333433333334444444333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.72  E-value=4.3  Score=39.07  Aligned_cols=179  Identities=15%  Similarity=0.121  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHH
Q 013685           74 AEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS  153 (438)
Q Consensus        74 ~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~  153 (438)
                      +-+..++-....+..+...+...|...++.=..|..+|..+...                  . - -..++-.....++.
T Consensus         8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q------------------~-~-s~Qqal~~aK~l~e   67 (193)
T PF14662_consen    8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQ------------------L-K-SLQQALQKAKALEE   67 (193)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H-H-HHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555520                  0 0 11233444555666


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhh
Q 013685          154 EVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN  233 (438)
Q Consensus       154 EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEr  233 (438)
                      |++.|+.-+-.++...+-+..        .-.+++.-+-.+...|..|..+-.++..+.+.++.+-.++       ..++
T Consensus        68 EledLk~~~~~lEE~~~~L~a--------q~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL-------~~~~  132 (193)
T PF14662_consen   68 ELEDLKTLAKSLEEENRSLLA--------QARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL-------ATEK  132 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH-------HHhh
Confidence            676666666665555444433        2233444444555555555555555555555555544433       3345


Q ss_pred             HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccc
Q 013685          234 EGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKREL  296 (438)
Q Consensus       234 e~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~  296 (438)
                      ..|+..+.         ....=+-..+.-+.+....+..+...++.+..-+.+|+.++.+.+-
T Consensus       133 ~~Lq~Ql~---------~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEe  186 (193)
T PF14662_consen  133 ATLQRQLC---------EFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEE  186 (193)
T ss_pred             HHHHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555553         3333334445566666777777777888888888888888877663

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=94.65  E-value=2.3  Score=38.55  Aligned_cols=71  Identities=30%  Similarity=0.410  Sum_probs=44.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685          146 EELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM  220 (438)
Q Consensus       146 ~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~  220 (438)
                      .++..+.-++..+......+...+..+..    .++...+++...+.........+..+|++.+-++..|+.++.
T Consensus        80 ~~~~~~ere~~~~~~~~~~l~~~~~~~~~----~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~  150 (151)
T PF11559_consen   80 EQLEELERELASAEEKERQLQKQLKSLEA----KLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN  150 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33334444444444444444444444444    555566667777777777777888888888888888888763

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.65  E-value=2.5  Score=37.71  Aligned_cols=128  Identities=22%  Similarity=0.383  Sum_probs=63.4

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 013685          145 EEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKET  224 (438)
Q Consensus       145 ~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~  224 (438)
                      ..++.++.+++..+...+..+...+.....    ++......+......|....--....++    .|..++..+..+..
T Consensus         2 ~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~----dl~~q~~~a~~Aq~~YE~El~~Ha~~~~----~L~~lr~e~~~~~~   73 (132)
T PF07926_consen    2 ESELSSLQSELQRLKEQEEDAEEQLQSLRE----DLESQAKIAQEAQQKYERELVKHAEDIK----ELQQLREELQELQQ   73 (132)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHH
Confidence            346667777777777777777777766666    4444444444444444433333332222    22333344444444


Q ss_pred             HhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685          225 ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  292 (438)
Q Consensus       225 ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~  292 (438)
                      ++..++.+.+..+..+...     +.....+..       .|...+..++.++..|..+|.-|=.+|.
T Consensus        74 ~~~~l~~~~~~a~~~l~~~-----e~sw~~qk~-------~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   74 EINELKAEAESAKAELEES-----EASWEEQKE-------QLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455555555555444410     011222222       3344444445555556666666666654

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.56  E-value=7.5  Score=41.20  Aligned_cols=222  Identities=15%  Similarity=0.187  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE  101 (438)
Q Consensus        22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE  101 (438)
                      .+-.++...-..+++++.+|..++.+.-+++........+.+.+..++...+.+-.-.+..+......+..-...+..+.
T Consensus        64 ~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t  143 (499)
T COG4372          64 LLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLT  143 (499)
T ss_pred             HhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666677777777777777777777776666666655656555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHH
Q 013685          102 GLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIK  181 (438)
Q Consensus       102 ~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr  181 (438)
                      +.-..|+..+.++.                       .+..+|..+..++-.+-.+|.....-++++-.+++.+..    
T Consensus       144 ~Q~q~lqtrl~~l~-----------------------~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~----  196 (499)
T COG4372         144 KQAQDLQTRLKTLA-----------------------EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSA----  196 (499)
T ss_pred             HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            55555555555554                       245666666666666666666665555555555544221    


Q ss_pred             HHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Q 013685          182 SAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQ  261 (438)
Q Consensus       182 ~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~  261 (438)
                                     +|..-...+..-...+..+...+.....-+|....+...+-..|.         .....+..-..
T Consensus       197 ---------------~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~---------q~~q~iaar~e  252 (499)
T COG4372         197 ---------------QIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQIS---------QKAQQIAARAE  252 (499)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhHHH
Confidence                           011111222222223333333333333444444333333333343         33334444445


Q ss_pred             HHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685          262 AVEDLKANLMDKETELQNISEENEMLKLEISKR  294 (438)
Q Consensus       262 ~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~  294 (438)
                      .|..-..+|..++.....+..+...|..-...|
T Consensus       253 ~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y  285 (499)
T COG4372         253 QIRERERQLQRLETAQARLEQEVAQLEAYYQAY  285 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555566666666666666666665544433

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.56  E-value=8.4  Score=41.77  Aligned_cols=91  Identities=23%  Similarity=0.344  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHH----HchhhHHHH
Q 013685          201 LEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLK----ANLMDKETE  276 (438)
Q Consensus       201 le~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lk----a~L~~le~~  276 (438)
                      |+..++.++..+.||...+.-++.+|...-.+-..++..-...     .-.-+.+.+++..++..++    ..+.+.+..
T Consensus       485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e-----~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~  559 (622)
T COG5185         485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERE-----LVAQRIEIEKLEKELNDLNLLSKTSILDAEQL  559 (622)
T ss_pred             HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHhhhhccchHhhHHHH
Confidence            6777888888888888888888888777655555444333211     1134456666666666664    345566777


Q ss_pred             HHHHHHHHHHHHHHHhhccc
Q 013685          277 LQNISEENEMLKLEISKREL  296 (438)
Q Consensus       277 l~~L~eEieeLKsEI~~~~~  296 (438)
                      +++..-+++.++-.+..|--
T Consensus       560 vqs~~i~ld~~~~~~n~~r~  579 (622)
T COG5185         560 VQSTEIKLDELKVDLNRKRY  579 (622)
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            88888888888777765543

>TIGR02977 phageshock_pspA phage shock protein A

Probab=94.43  E-value=5.1  Score=38.74  Aligned_cols=104  Identities=16%  Similarity=0.173  Sum_probs=54.1

Q ss_pred             hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHH---HHHHHHHHHHHHHc
Q 013685          193 QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNND---LRKLAQAVEDLKAN  269 (438)
Q Consensus       193 e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~e---l~~~~~~Ie~Lka~  269 (438)
                      .+.+-|.+.+..|...+..|....+....++.++..+......+.......+...+|.=++.-   .......+..++.+
T Consensus        28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~  107 (219)
T TIGR02977        28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERE  107 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555556666666666666666666666655555555555444444444333322   23333445555555


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhccc
Q 013685          270 LMDKETELQNISEENEMLKLEISKREL  296 (438)
Q Consensus       270 L~~le~~l~~L~eEieeLKsEI~~~~~  296 (438)
                      +..+...++.|...+..|+..|..+.+
T Consensus       108 ~~~~~~~v~~l~~~l~~L~~ki~~~k~  134 (219)
T TIGR02977       108 LAAVEETLAKLQEDIAKLQAKLAEARA  134 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555554443

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.41  E-value=12  Score=43.14  Aligned_cols=194  Identities=18%  Similarity=0.113  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcc
Q 013685           50 QAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLG  129 (438)
Q Consensus        50 ~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~  129 (438)
                      .|..++.-...++..+......-.....+..++.+.++.++.++.+.-..++.-...+    ..+               
T Consensus       355 ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~----ee~---------------  415 (980)
T KOG0980|consen  355 EARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLV----EEA---------------  415 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhH---------------
Confidence            3444444455555555555555555555555555555555544443333222222111    111               


Q ss_pred             hhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHH
Q 013685          130 QKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAK  209 (438)
Q Consensus       130 ~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~  209 (438)
                              ...+.....+++.++.-+..|+..=-++-.+|.+.+.+.+.... .+..+++.+..+...+.++..+....+
T Consensus       416 --------e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~-s~~~~~~~~~~L~d~le~~~~~~~~~~  486 (980)
T KOG0980|consen  416 --------ENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ-SIDDVEEENTNLNDQLEELQRAAGRAE  486 (980)
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    12333445566666777777766666666666665554443322 333677777777777777777777777


Q ss_pred             HHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhh--hhhhhhhHHHHHHHHHHHHHHHHchh
Q 013685          210 SDIEELKANLMDKETELQGISEENEGLHMQLDKNLM--CQRESQLNNDLRKLAQAVEDLKANLM  271 (438)
Q Consensus       210 ~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~--~~~~~el~~el~~~~~~Ie~Lka~L~  271 (438)
                      ...++....+..++.||.-+..+-+.|+..+.+...  ++.=.++...+...+..+..+..++.
T Consensus       487 ~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~  550 (980)
T KOG0980|consen  487 TKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREE  550 (980)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            778888888888888888888888888877663221  22334556666666666666666653

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=94.37  E-value=16  Score=44.10  Aligned_cols=53  Identities=19%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIK  191 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K  191 (438)
                      ....++|..++..+..+|..+.+.+..+..+++-+..... +..++|+++.+.+
T Consensus       877 l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~-e~~s~~e~~k~~~  929 (1294)
T KOG0962|consen  877 LARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELE-EAQSEKEELKNER  929 (1294)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHH-HHHHHHHHHHHHh
Confidence            3455667777777777777777777777766665544332 4445555555444

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=94.29  E-value=12  Score=42.44  Aligned_cols=188  Identities=19%  Similarity=0.223  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHH
Q 013685           68 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEE  147 (438)
Q Consensus        68 ~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~E  147 (438)
                      .+..+-..+.+....+.-+..+|+-.-+.+......+.+|-.++....                       +..-.|-.+
T Consensus       434 ~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekd-----------------------d~nfklm~e  490 (698)
T KOG0978|consen  434 QVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKD-----------------------DKNFKLMSE  490 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hHHHHHHHH
Confidence            334444444555555556666666666666666666666655444433                       233334444


Q ss_pred             HHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhh
Q 013685          148 LSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQ  227 (438)
Q Consensus       148 ie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq  227 (438)
                      -..+...+..|+.....++..+.-+...-. -..-.+-.++..-..+.....-+..++..+.-.++..+..-.+....+.
T Consensus       491 ~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~-~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~  569 (698)
T KOG0978|consen  491 RIKANQKHKLLREEKSKLEEQILTLKASVD-KLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLE  569 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444332222110 1111111222222333444444555555555555555555555544444


Q ss_pred             hhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 013685          228 GISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRE  295 (438)
Q Consensus       228 ~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~  295 (438)
                      .       |+....         .....+..+...+.++...|+...-.+..+.++++.|+..+....
T Consensus       570 ~-------Lq~~~e---------k~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k  621 (698)
T KOG0978|consen  570 D-------LQIELE---------KSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK  621 (698)
T ss_pred             H-------HHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4       344443         444455556666666666666666777777777777777666443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.27  E-value=7.3  Score=39.89  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=15.3

Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHH
Q 013685          140 ESKHLEEELSSLKSEVGQLRSALEI  164 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~Les~Ie~  164 (438)
                      -.|.|......+..++..|+.....
T Consensus       178 ~~~~l~~~~~~L~~e~~~Lk~~~~e  202 (325)
T PF08317_consen  178 LLPKLRERKAELEEELENLKQLVEE  202 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555666666666666666665554

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.24  E-value=7.7  Score=40.08  Aligned_cols=132  Identities=16%  Similarity=0.158  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 013685           34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALR---------------------AEGMKAIEAYSSIASELER   92 (438)
Q Consensus        34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le---------------------~ei~elee~~~sl~~ELee   92 (438)
                      |--+...|+.|..++.++-.+++.+..+...++.....+.                     ..+.+..+....+..++..
T Consensus        11 L~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~   90 (319)
T PF09789_consen   11 LLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEE   90 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3346677777888888887777777666666666555444                     5567778888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685           93 SRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG  172 (438)
Q Consensus        93 ~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe  172 (438)
                      ++.++..+.+++.-|...+.......     ..+.....      ..+-..|-.+++.++..+.+|+..+...-.+.+|.
T Consensus        91 Lrqkl~E~qGD~KlLR~~la~~r~~~-----~~~~~~~~------~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl  159 (319)
T PF09789_consen   91 LRQKLNEAQGDIKLLREKLARQRVGD-----EGIGARHF------PHEREDLVEQLEKLREQIEQLERDLQSLLDEKEEL  159 (319)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhhhhh-----cccccccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888777766311     11111111      14555677788888888888888888777777776


Q ss_pred             hhhc
Q 013685          173 QIQS  176 (438)
Q Consensus       173 ~~e~  176 (438)
                      ..++
T Consensus       160 ~~ER  163 (319)
T PF09789_consen  160 VTER  163 (319)
T ss_pred             HHHH
Confidence            6644

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=94.21  E-value=11  Score=42.67  Aligned_cols=47  Identities=11%  Similarity=0.154  Sum_probs=37.3

Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          195 GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       195 ~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      ...|.++..++..++..+.++.....+.--.++.++.+...|+..|.
T Consensus       287 ~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~  333 (754)
T TIGR01005       287 EDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIR  333 (754)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence            36677888888888888888888888888888888888888887775

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.07  E-value=11  Score=41.39  Aligned_cols=228  Identities=18%  Similarity=0.249  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           30 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA  109 (438)
Q Consensus        30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~  109 (438)
                      ....|+..+..+.+|++-++..+....+...++-+++....+|-+-|.+....+.++.--|++-+.++..++..+.+...
T Consensus       329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~  408 (654)
T KOG4809|consen  329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN  408 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999999999988888999999999999999999999999999999999999999999998888887


Q ss_pred             HhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHH
Q 013685          110 DTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQ  189 (438)
Q Consensus       110 eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~  189 (438)
                      .......+                 +.-++-|.+|..++...+.+.+-..+    ...           ++=...-++++
T Consensus       409 ~~ddar~~-----------------pe~~d~i~~le~e~~~y~de~~kaqa----evd-----------rlLeilkeven  456 (654)
T KOG4809|consen  409 IEDDARMN-----------------PEFADQIKQLEKEASYYRDECGKAQA----EVD-----------RLLEILKEVEN  456 (654)
T ss_pred             hhHhhhcC-----------------hhhHHHHHHHHHHHHHHHHHHHHHHH----HHH-----------HHHHHHHHHHh
Confidence            66555531                 11133344444444443333332222    111           22223445678


Q ss_pred             HHhhhhhcHHHHHHHHHHHHHHHHHHHH-hhccHHHHhhh---hHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 013685          190 IKHQSGLREVELEAELQKAKSDIEELKA-NLMDKETELQG---ISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVED  265 (438)
Q Consensus       190 ~K~e~~~ri~Ele~eie~~~~eLeELka-~l~d~E~ELq~---L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~  265 (438)
                      .|+.-.-+|++++-..+.-...+.-++- ...+++.-+|.   +..+++.+.       ++++-..    +.++-..+++
T Consensus       457 eKnDkdkkiaeler~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~rrred~~~-------d~sqhlq----~eel~~alek  525 (654)
T KOG4809|consen  457 EKNDKDKKIAELERHMKDQNKKVANLKHKQQLEKKKNAQLLEEVRRREDSMA-------DNSQHLQ----IEELMNALEK  525 (654)
T ss_pred             hhccccchhhhcCchhhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhc-------chHHHHH----HHHHHHHHHH
Confidence            8888899999998777776666555442 22333333333   333333332       2222222    3333345566


Q ss_pred             HHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcc
Q 013685          266 LKANLMDKETELQNISEENEMLKLEISKRELDTPN  300 (438)
Q Consensus       266 Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~  300 (438)
                      .+.++.....++++...-+.+.+.-+...+.++.+
T Consensus       526 tkQel~~tkarl~stqqslaEke~HL~nLr~errk  560 (654)
T KOG4809|consen  526 TKQELDATKARLASTQQSLAEKEAHLANLRIERRK  560 (654)
T ss_pred             HhhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777777776666666666555544444333

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.99  E-value=16  Score=42.83  Aligned_cols=149  Identities=19%  Similarity=0.253  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhcccccccCCCCCCCcchhhhhcccccc
Q 013685           67 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD------TSNANRNLSQNCSGDYDLGQKIKENQDTME  140 (438)
Q Consensus        67 ~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e------I~~~e~~~~~~~~~~~~~~~~~~~~l~~~E  140 (438)
                      .++..++.+-..++.....-..-|..++.++..|+.+|+.+...      |+-++.                  ...=-+
T Consensus       181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~------------------k~~~v~  242 (1072)
T KOG0979|consen  181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEK------------------KKKWVE  242 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hccccc
Confidence            34444555555555555555555555555555555555555433      333321                  112234


Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685          141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM  220 (438)
Q Consensus       141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~  220 (438)
                      +..-+.+....+...++++..+..++..+.        -+.+-++.|++.+.+...+++.....+......+-++-..++
T Consensus       243 y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~--------pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~  314 (1072)
T KOG0979|consen  243 YKKHDREYNAYKQAKDRAKKELRKLEKEIK--------PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLK  314 (1072)
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666777777777777777766655533        344556777777888888888888888888888888888888


Q ss_pred             cHHHHhhhhHHhhHHHHHHhh
Q 013685          221 DKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       221 d~E~ELq~L~eEre~L~~ei~  241 (438)
                      +++.++..+...++.|+..-.
T Consensus       315 ~~~~~v~~~~~~le~lk~~~~  335 (1072)
T KOG0979|consen  315 EIEDEVEEKKNKLESLKKAAE  335 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888887777777665544

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=93.94  E-value=5.4  Score=37.12  Aligned_cols=29  Identities=28%  Similarity=0.496  Sum_probs=16.9

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685          141 SKHLEEELSSLKSEVGQLRSALEIAETKL  169 (438)
Q Consensus       141 i~eL~~Eie~lk~EI~~Les~Ie~aE~ri  169 (438)
                      +......+..++..|..++..++.++.+|
T Consensus       147 y~~~~~~~~~l~~~i~~l~rk~~~l~~~i  175 (177)
T PF13870_consen  147 YDKTKEEVEELRKEIKELERKVEILEMRI  175 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44455555666666666666666655554

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=93.92  E-value=14  Score=41.90  Aligned_cols=100  Identities=22%  Similarity=0.247  Sum_probs=74.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 013685          247 QRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLL  326 (438)
Q Consensus       247 ~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~  326 (438)
                      +.-..|..++..+...+..++.....+.-.+..+..+...+-+.++....+.+..    .-.++.-+..-.++.+.+.++
T Consensus       496 q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~----~~~le~~kk~~~e~~~~~~~L  571 (698)
T KOG0978|consen  496 QKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTL----TQSLEMLKKKAQEAKQSLEDL  571 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            3444788888888888888888888888888888777777777666555443322    223455666677888999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHh
Q 013685          327 MEEADKSNRRAARMAEQLEAAQSA  350 (438)
Q Consensus       327 ~e~~~~~~~~~~~~~e~l~a~~~a  350 (438)
                      -.+++++...--++-.++.+....
T Consensus       572 q~~~ek~~~~le~i~~~~~e~~~e  595 (698)
T KOG0978|consen  572 QIELEKSEAKLEQIQEQYAELELE  595 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888888888776543

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=93.89  E-value=8.2  Score=39.10  Aligned_cols=70  Identities=17%  Similarity=0.136  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           29 ETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN   98 (438)
Q Consensus        29 ~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~   98 (438)
                      +++--|.++..+++.|+++..+-+..++-+.+-|..-+..++.-..++.-+..+..++....+.+...-.
T Consensus        15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq   84 (307)
T PF10481_consen   15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ   84 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            5677899999999999999999999998888888777777777777776666666666555554443333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=93.70  E-value=14  Score=41.18  Aligned_cols=32  Identities=16%  Similarity=0.296  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           84 SSIASELERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        84 ~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      ..+..+......++..++..|..++..|....
T Consensus       185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~  216 (629)
T KOG0963|consen  185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQ  216 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34444445555566666666666665554444

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=93.70  E-value=15  Score=41.54  Aligned_cols=47  Identities=15%  Similarity=0.157  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685           70 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR  116 (438)
Q Consensus        70 e~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~  116 (438)
                      ..|...+..+++++..+..-++-+.-+|.+|..-+.==+.++...-.
T Consensus       245 ~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvq  291 (739)
T PF07111_consen  245 EELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQ  291 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            45666677777888888888888888888888777666667766663

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>TIGR00634 recN DNA repair protein RecN

Probab=93.64  E-value=13  Score=40.73  Aligned_cols=38  Identities=11%  Similarity=0.122  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           78 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      .+...+..+..+|.+.......+...+..++..|..+.
T Consensus       165 ~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe  202 (563)
T TIGR00634       165 ELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE  202 (563)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444444433333

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=93.64  E-value=12  Score=40.06  Aligned_cols=43  Identities=19%  Similarity=0.334  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          199 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       199 ~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      ..+..+|..++.++..+.....+-.-.++.+..+...|+..+.
T Consensus       250 ~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~  292 (498)
T TIGR03007       250 SELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKE  292 (498)
T ss_pred             CchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence            3455566666666677766666666666777777766666665

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=93.63  E-value=8.1  Score=38.18  Aligned_cols=127  Identities=16%  Similarity=0.178  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHH
Q 013685           78 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQ  157 (438)
Q Consensus        78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~  157 (438)
                      .+......+...-..+...|..+...|..|-..+..++.                  ...+.....|...+..++.=+..
T Consensus        77 ~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~------------------~~~~~~~~~l~~~l~ea~~mL~e  138 (264)
T PF06008_consen   77 QLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE------------------NGDQLPSEDLQRALAEAQRMLEE  138 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------------ccCCCCHHHHHHHHHHHHHHHHH
Confidence            333333333444444444555555555555555555552                  01122223344444444554555


Q ss_pred             HHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhh
Q 013685          158 LRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQG  228 (438)
Q Consensus       158 Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~  228 (438)
                      ++++  +.....+.    -+.++..++..+.+++..+.....+++.-.+.+...|.....+|+|+..-|.+
T Consensus       139 mr~r--~f~~~~~~----Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~e  203 (264)
T PF06008_consen  139 MRKR--DFTPQRQN----AEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNE  203 (264)
T ss_pred             HHhc--cchhHHHH----HHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544  12222222    23488889999999999988888888877777787777777777776655554

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.56  E-value=5.2  Score=35.72  Aligned_cols=39  Identities=23%  Similarity=0.293  Sum_probs=17.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQA   53 (438)
Q Consensus        15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~   53 (438)
                      .+.+++..+...+......+..++..+.........|+.
T Consensus         7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~   45 (132)
T PF07926_consen    7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQ   45 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.52  E-value=0.62  Score=44.17  Aligned_cols=121  Identities=26%  Similarity=0.392  Sum_probs=44.5

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh
Q 013685          139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN  218 (438)
Q Consensus       139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~  218 (438)
                      ..++.+...+..++.|+..+...-...-.++...        ...+..++........+|..+...+..++..+..+...
T Consensus        67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~--------~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~  138 (194)
T PF08614_consen   67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVEL--------NDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEE  138 (194)
T ss_dssp             -------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccc--------ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555555444444333333332222        22233333444455555666666666666666666666


Q ss_pred             hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHH
Q 013685          219 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETE  276 (438)
Q Consensus       219 l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~  276 (438)
                      +.++..-++.|.+|...|+.++.         -+..++..+..+=..|=.+.|.....
T Consensus       139 l~ek~k~~e~l~DE~~~L~l~~~---------~~e~k~~~l~~En~~Lv~Rwm~~k~~  187 (194)
T PF08614_consen  139 LKEKNKANEILQDELQALQLQLN---------MLEEKLRKLEEENRELVERWMQRKAQ  187 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666665         55555555555555555555554443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=93.40  E-value=25  Score=43.01  Aligned_cols=129  Identities=16%  Similarity=0.136  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALAR----ETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT   95 (438)
Q Consensus        20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~e----E~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~   95 (438)
                      +..--++++++...++.+...+..+..=......|..    ....++-.....+..+...+..+...+.....++.....
T Consensus       225 l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (1353)
T TIGR02680       225 VADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDA  304 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555556666666666666655555555553    355666777778888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685           96 RINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN  170 (438)
Q Consensus        96 eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq  170 (438)
                      .+..++..+..++.++..+.                      +++.-....++..++..+..+...++.....+.
T Consensus       305 ~~~~le~~~~~l~~~~~~l~----------------------~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~  357 (1353)
T TIGR02680       305 RTEALEREADALRTRLEALQ----------------------GSPAYQDAEELERARADAEALQAAAADARQAIR  357 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888777                      344444555666666666666666665555543

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.36  E-value=7.2  Score=41.70  Aligned_cols=200  Identities=25%  Similarity=0.275  Sum_probs=108.4

Q ss_pred             hhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHH---hhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHH
Q 013685          133 KENQDTMESKHLEEELSSLKSEVGQLRSALEIAET---KLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAK  209 (438)
Q Consensus       133 ~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~---riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~  209 (438)
                      ..+.-.+.-..|..++.-++-.|.+|.+.--.+..   ++--++.    ++.-.|-.++..-.+..-+-++--.+=.+..
T Consensus       209 ~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnl----qLvhR~h~LEEq~reqElraeE~l~Ee~rrh  284 (502)
T KOG0982|consen  209 LVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENL----QLVHRYHMLEEQRREQELRAEESLSEEERRH  284 (502)
T ss_pred             hhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            33444555566777888888877777663222221   1111122    3333333333333333333344444445566


Q ss_pred             HHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHH
Q 013685          210 SDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKL  289 (438)
Q Consensus       210 ~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKs  289 (438)
                      .+|.-+++++..++         ++.|++.+.         .+..+--.+++.+.+|++...-+....+.....++.+.-
T Consensus       285 rEil~k~eReasle---------~Enlqmr~q---------qleeentelRs~~arlksl~dklaee~qr~sd~LE~lrl  346 (502)
T KOG0982|consen  285 REILIKKEREASLE---------KENLQMRDQ---------QLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRL  346 (502)
T ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            66666777666555         344556665         677777777777888888888888888888888888888


Q ss_pred             HHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHH------HHhh-HHHHHHHhhhh
Q 013685          290 EISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAA------QSAN-CEAEAELRRLK  362 (438)
Q Consensus       290 EI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~------~~a~-~~~eae~~rl~  362 (438)
                      +++.-.-..-.|++-+.. ...-+-+-+|       ++|++-++--.+-+.  .|.++      ..|+ .+|+.|++|||
T Consensus       347 ql~~eq~l~~rm~d~Lrr-fq~ekeatqE-------Lieelrkelehlr~~--kl~~a~p~rgrsSaRe~eleqevkrLr  416 (502)
T KOG0982|consen  347 QLICEQKLRVRMNDILRR-FQEEKEATQE-------LIEELRKELEHLRRR--KLVLANPVRGRSSAREIELEQEVKRLR  416 (502)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhHHHHH-------HHHHHHHHHHHHHHH--HHHhhccccCchhHHHHHHHHHHHHhc
Confidence            777544333334443332 2222222222       344444443333221  11111      1233 46999999998


Q ss_pred             hc
Q 013685          363 VQ  364 (438)
Q Consensus       363 vq  364 (438)
                      --
T Consensus       417 q~  418 (502)
T KOG0982|consen  417 QP  418 (502)
T ss_pred             cc
Confidence            53

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=93.36  E-value=22  Score=42.24  Aligned_cols=32  Identities=9%  Similarity=0.051  Sum_probs=18.9

Q ss_pred             HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685          261 QAVEDLKANLMDKETELQNISEENEMLKLEIS  292 (438)
Q Consensus       261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~  292 (438)
                      ..++.++..+.+....+..+...+..+...+.
T Consensus       777 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~  808 (1047)
T PRK10246        777 ETLTQLEQLKQNLENQRQQAQTLVTQTAQALA  808 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666665555554444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.33  E-value=19  Score=41.50  Aligned_cols=50  Identities=30%  Similarity=0.300  Sum_probs=32.3

Q ss_pred             HhhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685            8 AQTKNAESAHLEL----QSLKGNLIETISLMENMKNQLRESKESETQAQALARE   57 (438)
Q Consensus         8 ~~~~~~E~a~~EL----e~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE   57 (438)
                      .+++.++..+.++    +.++.-|.+.+..+++++.....+.-+.......+..
T Consensus       643 ~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~  696 (970)
T KOG0946|consen  643 EQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQD  696 (970)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555544444    5566777777888888887777777666666665533

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.26  E-value=21  Score=41.91  Aligned_cols=113  Identities=19%  Similarity=0.200  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685           83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL  162 (438)
Q Consensus        83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I  162 (438)
                      |...+.+..+.......+...+.+|..++.....                       -+.+|..+...+.+.+...-+-+
T Consensus       243 y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~-----------------------~~eeLe~~~~et~~~~s~~~~~~  299 (1072)
T KOG0979|consen  243 YKKHDREYNAYKQAKDRAKKELRKLEKEIKPIED-----------------------KKEELESEKKETRSKISQKQREL  299 (1072)
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------------------hhhhHHhHHHhHHHHHHHHHHHH
Confidence            4555556666666666666666666665544442                       22233344555555555555555


Q ss_pred             HHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685          163 EIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL  219 (438)
Q Consensus       163 e~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l  219 (438)
                      ..+..++++...... +++...+...+....+..+.......|.+.+..|..++..+
T Consensus       300 ~e~~~k~~~~~ek~~-~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el  355 (1072)
T KOG0979|consen  300 NEALAKVQEKFEKLK-EIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAEL  355 (1072)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            555555444333111 22223333333333333333333444444444444444433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=93.26  E-value=8.2  Score=37.12  Aligned_cols=32  Identities=34%  Similarity=0.281  Sum_probs=16.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685          143 HLEEELSSLKSEVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       143 eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~  174 (438)
                      .++.++..++-+-..|..++...+.+..+++.
T Consensus        97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~  128 (201)
T PF13851_consen   97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYR  128 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555444

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.11  E-value=17  Score=40.29  Aligned_cols=64  Identities=22%  Similarity=0.210  Sum_probs=33.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA-------RETLLQLETAKLSVEALRAEGMKAIEAYS   84 (438)
Q Consensus        14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~-------eE~~~qLE~ae~~Ie~le~ei~elee~~~   84 (438)
                      ..++.+++.++.+|.+.-..++..       ..+..+|-.|=       .-+..+++.++...+..+.++....+.+-
T Consensus         4 ~~aeq~ve~lr~eierLT~el~q~-------t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~   74 (772)
T KOG0999|consen    4 PMAEQEVEKLRQEIERLTEELEQT-------TEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALG   74 (772)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666777777666655544444       33444443333       22555555555555555555555554443

>TIGR00634 recN DNA repair protein RecN

Probab=93.10  E-value=16  Score=40.10  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           67 LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA  109 (438)
Q Consensus        67 ~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~  109 (438)
                      ..+..+-.....+...+..+.........++..+.-.+.+|++
T Consensus       161 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~  203 (563)
T TIGR00634       161 KAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE  203 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            3333333444444444444444444444444455555544443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK10698 phage shock protein PspA; Provisional

Probab=93.05  E-value=9.4  Score=37.23  Aligned_cols=52  Identities=15%  Similarity=0.187  Sum_probs=41.3

Q ss_pred             HHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          190 IKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       190 ~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      .|..+...+..++.++......++.|+..+..++..|...+..+..|.....
T Consensus        93 ~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~  144 (222)
T PRK10698         93 EKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ  144 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677778888888888888888888888888888888888888876665

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.74  E-value=4.3  Score=36.22  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=12.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhh
Q 013685          150 SLKSEVGQLRSALEIAETKLNE  171 (438)
Q Consensus       150 ~lk~EI~~Les~Ie~aE~riqE  171 (438)
                      .....+..|+..+..+..+|+-
T Consensus        65 ~~~~~~~~L~~el~~l~~ry~t   86 (120)
T PF12325_consen   65 ALKKEVEELEQELEELQQRYQT   86 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666666666666654

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.65  E-value=1.6  Score=48.26  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHH
Q 013685          252 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLK  288 (438)
Q Consensus       252 l~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLK  288 (438)
                      ...++..++.+|..|+-.|+....+...|..++..++
T Consensus       472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~  508 (652)
T COG2433         472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELR  508 (652)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666778888888888888888888877777776

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=92.62  E-value=16  Score=38.88  Aligned_cols=26  Identities=12%  Similarity=0.221  Sum_probs=14.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685          147 ELSSLKSEVGQLRSALEIAETKLNEG  172 (438)
Q Consensus       147 Eie~lk~EI~~Les~Ie~aE~riqEe  172 (438)
                      .+..+..+|.++++.|..+..++.+.
T Consensus       237 ~~~~~~~~i~~l~~~i~~~~~~~~~~  262 (457)
T TIGR01000       237 ILATIQQQIDQLQKSIASYQVQKAGL  262 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            44455555555555555555555544

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=92.53  E-value=17  Score=38.86  Aligned_cols=32  Identities=22%  Similarity=0.191  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013685           81 EAYSSIASELERSRTRINLLEGLVSKLEADTS  112 (438)
Q Consensus        81 e~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~  112 (438)
                      ..+..+..++...+.++..++..+..|...+.
T Consensus       204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~  235 (498)
T TIGR03007       204 SEISEAQEELEAARLELNEAIAQRDALKRQLG  235 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444445555555555555555555555444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=92.38  E-value=4.7  Score=37.55  Aligned_cols=39  Identities=23%  Similarity=0.374  Sum_probs=18.1

Q ss_pred             hHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHH
Q 013685          252 LNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLE  290 (438)
Q Consensus       252 l~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsE  290 (438)
                      +..++...+..+..++..+..+....+.+...+..++.-
T Consensus       149 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l  187 (191)
T PF04156_consen  149 LQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL  187 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444445555555444444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.30  E-value=1.3  Score=45.31  Aligned_cols=123  Identities=21%  Similarity=0.242  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           30 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA  109 (438)
Q Consensus        30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~  109 (438)
                      +..+++.+..++.++.+++..+..++..+.. -......+..+..++..++.+...+..+|..++.+-..+..++..++.
T Consensus         7 ~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~-~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~   85 (314)
T PF04111_consen    7 TDLLLEQLDKQLEQAEKERDTYQEFLKKLEE-ESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE   85 (314)
T ss_dssp             ------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888888888998888888888865441 111223333444444444444444444444444444444444444444


Q ss_pred             HhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685          110 DTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKL  169 (438)
Q Consensus       110 eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ri  169 (438)
                      +...+..                ++...=...+.+.-++.....+...+...+...-..+
T Consensus        86 e~~~l~~----------------eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L  129 (314)
T PF04111_consen   86 ELEELDE----------------EEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL  129 (314)
T ss_dssp             HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333331                0011122444455555555555555555555444444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.95  E-value=9.4  Score=37.65  Aligned_cols=92  Identities=15%  Similarity=0.208  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN   98 (438)
Q Consensus        19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~   98 (438)
                      +++.+..+|-.....+++-..-|.++..+....+........+|..+..+|..++.-|..+..+++.....+..+-.++.
T Consensus        12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~   91 (230)
T PF10146_consen   12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYK   91 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444445555555555555555555555555555555555566665555555555555555555555555555


Q ss_pred             HHHHHHHHHHHH
Q 013685           99 LLEGLVSKLEAD  110 (438)
Q Consensus        99 ~LE~ei~kLe~e  110 (438)
                      .|...|.++..+
T Consensus        92 ~Lk~~in~~R~e  103 (230)
T PF10146_consen   92 PLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.81  E-value=13  Score=36.43  Aligned_cols=87  Identities=24%  Similarity=0.334  Sum_probs=38.4

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685          141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM  220 (438)
Q Consensus       141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~  220 (438)
                      +..+...+..++.+...|+.+|+.+=.--..........++..+.....+......++..+...|...+..+.+++..+.
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~  101 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE  101 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555432200000111112344444444444444444455555555555555555544444


Q ss_pred             cHHHHhh
Q 013685          221 DKETELQ  227 (438)
Q Consensus       221 d~E~ELq  227 (438)
                      .....|.
T Consensus       102 ~~~~~l~  108 (302)
T PF10186_consen  102 QRRSRLS  108 (302)
T ss_pred             HHHHHHH
Confidence            4444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=91.80  E-value=13  Score=35.78  Aligned_cols=27  Identities=19%  Similarity=0.496  Sum_probs=15.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHchhhHH
Q 013685          248 RESQLNNDLRKLAQAVEDLKANLMDKE  274 (438)
Q Consensus       248 ~~~el~~el~~~~~~Ie~Lka~L~~le  274 (438)
                      +-.++..++..+..+|..|...|..++
T Consensus       165 K~~~~~~~~~~l~~ei~~L~~klkEKe  191 (194)
T PF15619_consen  165 KHKEAQEEVKSLQEEIQRLNQKLKEKE  191 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334566666666666666666555544

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=91.75  E-value=14  Score=36.22  Aligned_cols=197  Identities=20%  Similarity=0.235  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 013685           19 ELQSLKGNLIETISLMENMKNQ--------LRESKESETQAQALA-RETLLQLETAKLSVEALRAEGMKAIEAYSSI-AS   88 (438)
Q Consensus        19 ELe~lre~L~~~e~~Ieelr~q--------L~dl~~e~~~A~~~~-eE~~~qLE~ae~~Ie~le~ei~elee~~~sl-~~   88 (438)
                      -|..+.+.+......++.-..+        +..+.+.+..+...+ .++..+.+..+.--..++..+..+....... ..
T Consensus         6 KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~   85 (247)
T PF06705_consen    6 KLASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISE   85 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666544332        233333333333333 3455555555555556666666666555433 33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 013685           89 ELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETK  168 (438)
Q Consensus        89 ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~r  168 (438)
                      ..+.+...+..|...+..|+..|..-..                      .-...+.....++..+|..|...++.-...
T Consensus        86 ~~~~~~~~l~~L~~ri~~L~~~i~ee~~----------------------~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~  143 (247)
T PF06705_consen   86 KQEQLQSRLDSLNDRIEALEEEIQEEKE----------------------ERPQDIEELNQELVRELNELQEAFENERNE  143 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666777777777777776666552                      222334555556666777776666643333


Q ss_pred             hhhhhhhcHHHHHHHHHHHHHHHh-hhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhh-hHHhhHHHHHHhh
Q 013685          169 LNEGQIQSTVKIKSAFEQLEQIKH-QSGLREVELEAELQKAKSDIEELKANLMDKETELQG-ISEENEGLHMQLD  241 (438)
Q Consensus       169 iqEe~~e~~~elr~a~E~le~~K~-e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~-L~eEre~L~~ei~  241 (438)
                      -.+-.    ..|...+..+..... ........-+..+..+...|+++...-..-...++. +.+|-..|+..|.
T Consensus       144 R~erE----~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~  214 (247)
T PF06705_consen  144 REERE----ENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALA  214 (247)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            22221    244444444433332 333333444667778888888888888888888888 8888888888887

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=91.60  E-value=15  Score=36.17  Aligned_cols=98  Identities=21%  Similarity=0.240  Sum_probs=50.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA------------RETLLQLETAKLSVEALRAEGMKA   79 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~------------eE~~~qLE~ae~~Ie~le~ei~el   79 (438)
                      +...+.+++..++..+..+...-.-+..++.++.......+.+.            .+.+.+...++..+..+...+..+
T Consensus        32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~  111 (225)
T COG1842          32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQA  111 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555554444444            113444455555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           80 IEAYSSIASELERSRTRINLLEGLVSKLEA  109 (438)
Q Consensus        80 ee~~~sl~~ELee~~~eI~~LE~ei~kLe~  109 (438)
                      .+....+...+..+..+|..++.....+.+
T Consensus       112 ~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a  141 (225)
T COG1842         112 EEQVEKLKKQLAALEQKIAELRAKKEALKA  141 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555555555444443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.38  E-value=8.7  Score=37.88  Aligned_cols=95  Identities=11%  Similarity=0.128  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           22 SLKGNLIETISLMENMKNQLRESKESETQAQALARE---TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN   98 (438)
Q Consensus        22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE---~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~   98 (438)
                      .+|........+..++...+..++.+..-+..|..+   +..+....-..|.....||..++..+.+...+..+....|.
T Consensus         5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~   84 (230)
T PF10146_consen    5 EIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQ   84 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555555444444444422   33333333344444455555555555555555555555555


Q ss_pred             HHHHHHHHHHHHhhhccc
Q 013685           99 LLEGLVSKLEADTSNANR  116 (438)
Q Consensus        99 ~LE~ei~kLe~eI~~~e~  116 (438)
                      .+.+++..|...|..+..
T Consensus        85 r~~eey~~Lk~~in~~R~  102 (230)
T PF10146_consen   85 RLYEEYKPLKDEINELRK  102 (230)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555555555543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=91.10  E-value=32  Score=39.11  Aligned_cols=98  Identities=16%  Similarity=0.183  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 013685          251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEA  330 (438)
Q Consensus       251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~  330 (438)
                      .+..++..++....++++.+.+++.+...+..-++++++.+.+.-          ..+-..|+.-+..-+..++.+.+-+
T Consensus       527 k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~n----------rlkQdear~~~~~lvqqv~dLR~~L  596 (961)
T KOG4673|consen  527 KHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKEN----------RLKQDEARERESMLVQQVEDLRQTL  596 (961)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHh----------hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            566677777788888888888888888888888888888664322          2223456666666666666655555


Q ss_pred             HHhhHHHH-----------HHHHHHHHHHHhhHHHHHHH
Q 013685          331 DKSNRRAA-----------RMAEQLEAAQSANCEAEAEL  358 (438)
Q Consensus       331 ~~~~~~~~-----------~~~e~l~a~~~a~~~~eae~  358 (438)
                      -+--.-+|           .|--+|.||+.-++++=.++
T Consensus       597 ~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v  635 (961)
T KOG4673|consen  597 SKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV  635 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33322222           23456667776666665544

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.89  E-value=4.9  Score=40.65  Aligned_cols=90  Identities=27%  Similarity=0.305  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHH
Q 013685          198 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETEL  277 (438)
Q Consensus       198 i~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l  277 (438)
                      +..|++.|.+.+..+++-+.....+..|.+.|.+..+.|...-.         -+.+++.-...-|.-+.++|......+
T Consensus        41 leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq---------Klshdlq~Ke~qv~~lEgQl~s~Kkqi  111 (307)
T PF10481_consen   41 LESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ---------KLSHDLQVKESQVNFLEGQLNSCKKQI  111 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH---------HhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            56688888888888888888888888888888888888776665         788888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccc
Q 013685          278 QNISEENEMLKLEISKREL  296 (438)
Q Consensus       278 ~~L~eEieeLKsEI~~~~~  296 (438)
                      +.|..++.-+++++.+-..
T Consensus       112 e~Leqelkr~KsELErsQ~  130 (307)
T PF10481_consen  112 EKLEQELKRCKSELERSQQ  130 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999998886554

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.88  E-value=10  Score=33.80  Aligned_cols=90  Identities=16%  Similarity=0.202  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETL---LQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTR   96 (438)
Q Consensus        20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~---~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~e   96 (438)
                      ++.+...|.+.+..+..++.++..+..++..+...+-.+.   ..+......+..|+.++..+...|..+-.=+-+...+
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~   97 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE   97 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            3444445555555555555555555555555555553322   2234445556666666666666666665555555555


Q ss_pred             HHHHHHHHHHHHH
Q 013685           97 INLLEGLVSKLEA  109 (438)
Q Consensus        97 I~~LE~ei~kLe~  109 (438)
                      +..|..+|..+..
T Consensus        98 veEL~~Dv~DlK~  110 (120)
T PF12325_consen   98 VEELRADVQDLKE  110 (120)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK10698 phage shock protein PspA; Provisional

Probab=90.85  E-value=17  Score=35.47  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHhhhhhc
Q 013685          340 MAEQLEAAQSANCEAEAELRRLKVQ  364 (438)
Q Consensus       340 ~~e~l~a~~~a~~~~eae~~rl~vq  364 (438)
                      +..++...+. .+..+.||-+||-+
T Consensus       193 l~~e~~~le~-~~~ve~ELa~LK~~  216 (222)
T PRK10698        193 LDQQFAELKA-DDEISEQLAALKAK  216 (222)
T ss_pred             HHHHHHHhhc-cchHHHHHHHHHHH
Confidence            4445555533 45678888777754

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=90.80  E-value=30  Score=38.21  Aligned_cols=160  Identities=16%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccc
Q 013685           58 TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQD  137 (438)
Q Consensus        58 ~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~  137 (438)
                      ....+.+++..+...+.++..+...++.+...=.+...+|..--+.-.+|..++..-+                   .+-
T Consensus       102 A~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~-------------------~~~  162 (570)
T COG4477         102 AKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANR-------------------HQY  162 (570)
T ss_pred             hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh-------------------hhh
Confidence            4555555566666666666666666666666666666666666677777777666555                   344


Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHH------HHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSAL------EIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSD  211 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~I------e~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~e  211 (438)
                      |+-+|.|..+++.+.+++.+...-=      ++.+.=  +...+.+..|+...+++=....+...   ++=.+|.+++.-
T Consensus       163 Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl--~~~ee~~~~L~~~~e~IP~L~~e~~~---~lP~ql~~Lk~G  237 (570)
T COG4477         163 GEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVL--EEAEEHMIALRSIMERIPSLLAELQT---ELPGQLQDLKAG  237 (570)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHH
Confidence            6677777777777777777655421      111110  01111112333333333333332222   222344555555


Q ss_pred             HHHHHHh-----hccHHHHhhhhHHhhHHHHHHhh
Q 013685          212 IEELKAN-----LMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       212 LeELka~-----l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      ..+++..     -++++.+++.|++........+.
T Consensus       238 yr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~  272 (570)
T COG4477         238 YRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLT  272 (570)
T ss_pred             HHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHH
Confidence            5555543     24555666666666655544443

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=90.80  E-value=36  Score=39.14  Aligned_cols=236  Identities=21%  Similarity=0.248  Sum_probs=125.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQA-QALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL   90 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A-~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL   90 (438)
                      .+--+..|-...++.+.++-+..+++..++.+.+...... ..-.+++.....+++=-+.+|.+.+.+..+      .| 
T Consensus       285 ~~~la~~Ee~~a~E~i~e~tSE~kdlni~~~d~~~~kd~qk~~n~~kta~KVrt~KYLLgELkaLVaeq~D------sE-  357 (861)
T PF15254_consen  285 PAFLASNEEKCAEEQIEEATSEGKDLNIQVRDAKTVKDVQKAKNPNKTAEKVRTLKYLLGELKALVAEQED------SE-  357 (861)
T ss_pred             ccccccccccchHHHhhhccchhhhcccccCchhhhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHhccch------HH-
Confidence            3344456667778888888888888887777765222211 122367888888888888777776665531      11 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685           91 ERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN  170 (438)
Q Consensus        91 ee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq  170 (438)
                            |   ...|.++++=|.-+-+-     +++            ..=+-+|-=-+..+++|..+|+.+|..+...+.
T Consensus       358 ------~---qRLitEvE~cislLPav-----~g~------------tniq~EIALA~QplrsENaqLrRrLrilnqqlr  411 (861)
T PF15254_consen  358 ------V---QRLITEVEACISLLPAV-----SGS------------TNIQVEIALAMQPLRSENAQLRRRLRILNQQLR  411 (861)
T ss_pred             ------H---HHHHHHHHHHHHhhhhh-----hcc------------ccchhhhHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence                  1   12233344333333321     111            112223334467899999999999999999887


Q ss_pred             hhh-hhcH---HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhh
Q 013685          171 EGQ-IQST---VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMC  246 (438)
Q Consensus       171 Ee~-~e~~---~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~  246 (438)
                      |-. .++.   .+..=.+..++.....       |+.+|++.-..++-|+..-.++-.-+.++++||..|...+.     
T Consensus       412 eqe~~~k~~~~~~~n~El~sLqSlN~~-------Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~-----  479 (861)
T PF15254_consen  412 EQEKAEKTSGSQDCNLELFSLQSLNMS-------LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQ-----  479 (861)
T ss_pred             HHHhhcccCCCcccchhhHHHHHHHHH-------HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            732 2111   1111112222333322       44445555555555555555555666677777777776665     


Q ss_pred             hhhhhhHHHHHHHHHHHHHHH-------HchhhHHHHHHHHHHHHHHHHHHHh
Q 013685          247 QRESQLNNDLRKLAQAVEDLK-------ANLMDKETELQNISEENEMLKLEIS  292 (438)
Q Consensus       247 ~~~~el~~el~~~~~~Ie~Lk-------a~L~~le~~l~~L~eEieeLKsEI~  292 (438)
                      .++.++..-....+.++.+++       .++..+.-.+....-||..|.-.|.
T Consensus       480 ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlr  532 (861)
T PF15254_consen  480 EKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLR  532 (861)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHH
Confidence            222333333333333333333       3333444444444444444444444

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=90.62  E-value=16  Score=34.88  Aligned_cols=53  Identities=26%  Similarity=0.378  Sum_probs=41.3

Q ss_pred             HHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          189 QIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       189 ~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      ..+..+...+..+...+......+..|+..+..++..|..++.++..|.....
T Consensus        91 ~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~  143 (221)
T PF04012_consen   91 QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN  143 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666677777788888888888888888888888888888888887776654

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=90.34  E-value=20  Score=35.44  Aligned_cols=94  Identities=12%  Similarity=0.090  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           16 AHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT   95 (438)
Q Consensus        16 a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~   95 (438)
                      +...++.+...|....+.+.-.+.++..++.........++.+..+....-.....+......+-..-..+...+..+..
T Consensus        22 l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~  101 (264)
T PF06008_consen   22 LLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQD  101 (264)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445554444444444445555444444444444444444444444444444444444444444455555555


Q ss_pred             HHHHHHHHHHHHHH
Q 013685           96 RINLLEGLVSKLEA  109 (438)
Q Consensus        96 eI~~LE~ei~kLe~  109 (438)
                      .|..+-..+..+..
T Consensus       102 ~i~~l~~~~~~l~~  115 (264)
T PF06008_consen  102 NIQELIEQVESLNE  115 (264)
T ss_pred             HHHHHHHHHHHhCc
Confidence            55555555544444

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.34  E-value=37  Score=38.50  Aligned_cols=30  Identities=13%  Similarity=0.082  Sum_probs=15.6

Q ss_pred             hhHHHHHHHHHHHHHHHHchhhHHHHHHHH
Q 013685          251 QLNNDLRKLAQAVEDLKANLMDKETELQNI  280 (438)
Q Consensus       251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L  280 (438)
                      ....++..+.++++..+.....+-.+++..
T Consensus       373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~  402 (754)
T TIGR01005       373 EQQVDLDALQRDAAAKRQLYESYLTNYRQA  402 (754)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555433

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=89.98  E-value=22  Score=40.59  Aligned_cols=104  Identities=18%  Similarity=0.165  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhc
Q 013685           56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKEN  135 (438)
Q Consensus        56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~  135 (438)
                      .++..+...++..++.--.++..+++.+..++..-+.+..++..+.+.-+.|...+..+-... +          .+.+.
T Consensus       561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l-~----------~~~P~  629 (717)
T PF10168_consen  561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL-N----------SQLPV  629 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------ccCCC
Confidence            334444444444444444444444444444444444444444444444444444444333110 0          00012


Q ss_pred             ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685          136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNE  171 (438)
Q Consensus       136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE  171 (438)
                      +...| .+.+.|+..++..+..+..+|+.+..+++-
T Consensus       630 LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~  664 (717)
T PF10168_consen  630 LSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDY  664 (717)
T ss_pred             CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22333 667777777777777777777777666543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=89.98  E-value=30  Score=36.90  Aligned_cols=58  Identities=17%  Similarity=0.137  Sum_probs=34.8

Q ss_pred             HHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          184 FEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       184 ~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      .-+....++.....|....-+|--....|.+-...+..+|+++.-|..+-..|...+.
T Consensus       226 ~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ  283 (499)
T COG4372         226 AQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQ  283 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555566666666666666666667777666666666665554

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=89.95  E-value=20  Score=34.86  Aligned_cols=139  Identities=18%  Similarity=0.156  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 013685           34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASE--------------LERSRTRINL   99 (438)
Q Consensus        34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~E--------------Lee~~~eI~~   99 (438)
                      |.=++.+|.++..++++-...+=.+..++..++..+...+..+..+...+.+-..+              .+-++..|..
T Consensus        12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~   91 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQ   91 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhh
Confidence            44555555555555555555554455555555555555555555554444443333              3333344444


Q ss_pred             HHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685          100 LEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEG  172 (438)
Q Consensus       100 LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe  172 (438)
                      ++.++..|...+....+....+...+..++.........+.+..|..+++.++.+|...+.+.+.--.-+..+
T Consensus        92 le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~E  164 (202)
T PF06818_consen   92 LEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQE  164 (202)
T ss_pred             hHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4555555555444432100000111111121222222245677888889999999888888887666555543

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=89.94  E-value=28  Score=36.60  Aligned_cols=114  Identities=19%  Similarity=0.311  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhh--hhhhhhHHH
Q 013685          178 VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMC--QRESQLNND  255 (438)
Q Consensus       178 ~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~--~~~~el~~e  255 (438)
                      .-++..+......+..+.-.......+|...+..|..|+..+.+++.=|+-..-.-+. +..=..-.-|  .-.+.|..|
T Consensus       247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~-R~~RP~vElcrD~~q~~L~~E  325 (384)
T PF03148_consen  247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLEN-RTQRPNVELCRDPPQYGLIEE  325 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh-HhcCCchHHHHhhHHHHHHHH
Confidence            5666667777777777777777777777777777777777777777666533222111 0000000111  134577788


Q ss_pred             HHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHh
Q 013685          256 LRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS  292 (438)
Q Consensus       256 l~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~  292 (438)
                      +..+...+..|..+|...+..+..|..-...|..+|.
T Consensus       326 v~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~  362 (384)
T PF03148_consen  326 VKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA  362 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888777777777665

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.94  E-value=6.7  Score=34.40  Aligned_cols=56  Identities=21%  Similarity=0.251  Sum_probs=24.2

Q ss_pred             HHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          186 QLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       186 ~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      .++..++++..+...|+..|+..+....+|-..=.++++-++.|..++..+...+.
T Consensus         6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~   61 (107)
T PF09304_consen    6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIA   61 (107)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555544444444444444444444444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=89.80  E-value=42  Score=38.41  Aligned_cols=114  Identities=19%  Similarity=0.140  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 013685           32 SLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS-------RTRINLLEGLV  104 (438)
Q Consensus        32 ~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~-------~~eI~~LE~ei  104 (438)
                      ..=..+..++.++..+..++...+..+..+.+++......+..+...++-.+..++.+|.+.       =.+...||++-
T Consensus        27 ~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeEN  106 (717)
T PF09730_consen   27 SKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEEN  106 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            33344445555555555555555555555555555555555555555555555555555444       44566666666


Q ss_pred             HHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHH
Q 013685          105 SKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIA  165 (438)
Q Consensus       105 ~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~a  165 (438)
                      -.|++.+..+..|                    -=++.-|+-+|..+..|+..|.+.++.+
T Consensus       107 islQKqvs~Lk~s--------------------QvefE~~Khei~rl~Ee~~~l~~qlee~  147 (717)
T PF09730_consen  107 ISLQKQVSVLKQS--------------------QVEFEGLKHEIKRLEEEIELLNSQLEEA  147 (717)
T ss_pred             HHHHHHHHHHHHh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777777641                    1134445555555555555555555543

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=89.42  E-value=22  Score=34.65  Aligned_cols=140  Identities=18%  Similarity=0.164  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685           83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL  162 (438)
Q Consensus        83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I  162 (438)
                      +.......+.....|...-..+..+...|..+...           +.+..+...+-.+++|..+|....+.+..+...+
T Consensus        33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-----------~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l  101 (240)
T PF12795_consen   33 IKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-----------DAPSKEILANLSLEELEQRLSQEQAQLQELQEQL  101 (240)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-----------ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555556666666666666666666666531           0011113335567788888888888888888888


Q ss_pred             HHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHH--HHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685          163 EIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSD--IEELKANLMDKETELQGISEENEGLHMQL  240 (438)
Q Consensus       163 e~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~e--LeELka~l~d~E~ELq~L~eEre~L~~ei  240 (438)
                      -...+.+.....        .-+.+.....+...++.++...|......  -.--.+...-+.+|+.-+.-++..|..++
T Consensus       102 ~~~~~~l~~~~~--------~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el  173 (240)
T PF12795_consen  102 QQENSQLIEIQT--------RPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQEL  173 (240)
T ss_pred             HHHHHHHHHHHc--------cHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877777666544        22233333333333333333333321000  01113445556666666666666666666


Q ss_pred             h
Q 013685          241 D  241 (438)
Q Consensus       241 ~  241 (438)
                      .
T Consensus       174 ~  174 (240)
T PF12795_consen  174 L  174 (240)
T ss_pred             H
Confidence            5

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=89.41  E-value=49  Score=38.59  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           64 TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA  109 (438)
Q Consensus        64 ~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~  109 (438)
                      .++..|..++..+..++-++..-.-..++-+.+...|..++..+.+
T Consensus       355 ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a  400 (980)
T KOG0980|consen  355 EARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLA  400 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555555555554444444444444443

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=89.38  E-value=20  Score=34.19  Aligned_cols=47  Identities=17%  Similarity=0.243  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           30 TISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEG   76 (438)
Q Consensus        30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei   76 (438)
                      ++..|.++...+..++..+..+......+..++..+...+..+....
T Consensus        28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A   74 (221)
T PF04012_consen   28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA   74 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555444443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.05  E-value=3.2  Score=36.35  Aligned_cols=74  Identities=14%  Similarity=0.236  Sum_probs=52.0

Q ss_pred             HHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHH
Q 013685          211 DIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLE  290 (438)
Q Consensus       211 eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsE  290 (438)
                      +-+.|.+.-+++..-|.+|....+..+..+.         +|..+.+.+...+..|.++......+...|..+|.++...
T Consensus         3 e~~~l~as~~el~n~La~Le~slE~~K~S~~---------eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~   73 (107)
T PF09304_consen    3 EKEALEASQNELQNRLASLERSLEDEKTSQG---------ELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN   73 (107)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHH---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677778888888888888888888888         8888888888888888888888888888777777777777


Q ss_pred             Hhh
Q 013685          291 ISK  293 (438)
Q Consensus       291 I~~  293 (438)
                      +..
T Consensus        74 le~   76 (107)
T PF09304_consen   74 LED   76 (107)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=89.01  E-value=19  Score=33.44  Aligned_cols=92  Identities=15%  Similarity=0.236  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN   98 (438)
Q Consensus        19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~   98 (438)
                      ++......+......++.+..++.++.................+...+..+..+......+..++..+..++.+.+..+.
T Consensus        82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~  161 (191)
T PF04156_consen   82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ  161 (191)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444555555555555555555555555555544555555555


Q ss_pred             HHHHHHHHHHHH
Q 013685           99 LLEGLVSKLEAD  110 (438)
Q Consensus        99 ~LE~ei~kLe~e  110 (438)
                      .+...+..+...
T Consensus       162 ~~~~~~~~~~~~  173 (191)
T PF04156_consen  162 ELRSQLERLQEN  173 (191)
T ss_pred             HHHHHHHHHHHH
Confidence            555555444433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=88.95  E-value=2.6  Score=35.96  Aligned_cols=78  Identities=15%  Similarity=0.199  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 013685           40 QLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLS  119 (438)
Q Consensus        40 qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~  119 (438)
                      ++-++..++..+...++.+..+...+...|..+...+    +....+..++..+..+|..++..+..++..+..+-..+|
T Consensus        30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~----~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~iP  105 (108)
T PF02403_consen   30 EIIELDQERRELQQELEELRAERNELSKEIGKLKKAG----EDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSIP  105 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3444455555555555555555555555555555444    356677777888888888888888888888887776555


Q ss_pred             cC
Q 013685          120 QN  121 (438)
Q Consensus       120 ~~  121 (438)
                      |.
T Consensus       106 Ni  107 (108)
T PF02403_consen  106 NI  107 (108)
T ss_dssp             --
T ss_pred             CC
Confidence            53

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=88.94  E-value=2.8  Score=38.74  Aligned_cols=64  Identities=23%  Similarity=0.373  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHH
Q 013685           83 YSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSAL  162 (438)
Q Consensus        83 ~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~I  162 (438)
                      +..++.++.+++.++..|...+..|..++..+.+                     ..-..+|...|..++.+|..++++|
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~---------------------~~t~~el~~~i~~l~~e~~~l~~kL  132 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSS---------------------EPTNEELREEIEELEEEIEELEEKL  132 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555555555555555555555555553                     1223456677777777777777777


Q ss_pred             HHHHH
Q 013685          163 EIAET  167 (438)
Q Consensus       163 e~aE~  167 (438)
                      ..+..
T Consensus       133 ~~l~~  137 (169)
T PF07106_consen  133 EKLRS  137 (169)
T ss_pred             HHHHh
Confidence            76665

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.91  E-value=17  Score=32.76  Aligned_cols=96  Identities=18%  Similarity=0.183  Sum_probs=50.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           12 NAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELE   91 (438)
Q Consensus        12 ~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELe   91 (438)
                      +.+.+...+..+...+......+.-++.++..++.+...+......+..++..+...+.....++.++...+..+..   
T Consensus        53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~t---  129 (151)
T PF11559_consen   53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKT---  129 (151)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            44555555555555555555556666666655555555555555555555555555555555554444433333332   


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013685           92 RSRTRINLLEGLVSKLEAD  110 (438)
Q Consensus        92 e~~~eI~~LE~ei~kLe~e  110 (438)
                      +...++...+-++.+|...
T Consensus       130 q~~~e~rkke~E~~kLk~r  148 (151)
T PF11559_consen  130 QYEHELRKKEREIEKLKER  148 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334455555555555443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=88.89  E-value=40  Score=36.85  Aligned_cols=93  Identities=14%  Similarity=0.144  Sum_probs=42.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA---RETLLQLETAKLSVEALRAEGMKAIEAYSSIASE   89 (438)
Q Consensus        13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~---eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~E   89 (438)
                      .+.+.+++.-..++|.-+.+.+++++.|+..-.-+..+...+.   +++...|+.+.-.++.|...+-.-.-.       
T Consensus       332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~le-------  404 (622)
T COG5185         332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLE-------  404 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHH-------
Confidence            3444444444444444444444444444444333333333333   334444554444444444443333222       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           90 LERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        90 Lee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                         ..+.+.+|++.+.++..-+.+++
T Consensus       405 ---aq~~~~slek~~~~~~sl~~~i~  427 (622)
T COG5185         405 ---AQGIFKSLEKTLRQYDSLIQNIT  427 (622)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhc
Confidence               23445556666665555544444

>PF13166 AAA_13: AAA domain

Probab=88.87  E-value=44  Score=37.34  Aligned_cols=32  Identities=13%  Similarity=0.156  Sum_probs=16.4

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685          141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEG  172 (438)
Q Consensus       141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe  172 (438)
                      +..+..-+..+...|......+.....+++..
T Consensus       365 ~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~  396 (712)
T PF13166_consen  365 IDELNSIIDELNELIEEHNEKIDNLKKEQNEL  396 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555554444443

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=88.56  E-value=2.3  Score=35.84  Aligned_cols=66  Identities=26%  Similarity=0.454  Sum_probs=51.7

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHH
Q 013685          144 LEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKE  223 (438)
Q Consensus       144 L~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E  223 (438)
                      +..+|+.+...|.+++.+|+..+.++....+.-  +-                        =..++.++..++..+...|
T Consensus         3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~--e~------------------------R~~lE~E~~~l~~~l~~~E   56 (85)
T PF15188_consen    3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSP--EA------------------------RRSLEKELNELKEKLENNE   56 (85)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCCh--HH------------------------HHHHHHHHHHHHHHhhccH
Confidence            457899999999999999999999998766622  11                        1133377888889999999


Q ss_pred             HHhhhhHHhhHH
Q 013685          224 TELQGISEENEG  235 (438)
Q Consensus       224 ~ELq~L~eEre~  235 (438)
                      .+|+.|..+|..
T Consensus        57 ~eL~~LrkENrK   68 (85)
T PF15188_consen   57 KELKLLRKENRK   68 (85)
T ss_pred             HHHHHHHHhhhh
Confidence            999999998853

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.54  E-value=51  Score=37.72  Aligned_cols=35  Identities=20%  Similarity=0.427  Sum_probs=26.0

Q ss_pred             ccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685          136 QDTMESKHLEEELSSLKSEVGQLRSALEIAETKLN  170 (438)
Q Consensus       136 l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq  170 (438)
                      .--.|...+..++..++.-|.+++.+++.-...++
T Consensus       636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~  670 (717)
T PF10168_consen  636 EFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE  670 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33556777778888888888888888887666555

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=88.44  E-value=17  Score=36.01  Aligned_cols=41  Identities=20%  Similarity=0.137  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           75 EGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        75 ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      +....++.+.++..+..++......|.+++.+|......+.
T Consensus       164 e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         164 EYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            33333333333333333333333444444444444443333

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=88.40  E-value=33  Score=35.29  Aligned_cols=93  Identities=13%  Similarity=0.070  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINL   99 (438)
Q Consensus        20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~   99 (438)
                      +..++..|.+++.....+=.-..+|..+.+...-.++-+.-.|++++.++-.+..++.+...+++......+.+..++..
T Consensus        79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~  158 (302)
T PF09738_consen   79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE  158 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555544444444444444443333333344444444444444444444443333333333334444444444


Q ss_pred             HHHHHHHHHHHhh
Q 013685          100 LEGLVSKLEADTS  112 (438)
Q Consensus       100 LE~ei~kLe~eI~  112 (438)
                      |.+.|.....-|.
T Consensus       159 Lre~L~~rdeli~  171 (302)
T PF09738_consen  159 LREQLKQRDELIE  171 (302)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444433333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=88.24  E-value=26  Score=34.03  Aligned_cols=42  Identities=19%  Similarity=0.242  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           60 LQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE  101 (438)
Q Consensus        60 ~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE  101 (438)
                      .+|.++..+|...-.+|..+...+...+..|......+..+.
T Consensus        17 qQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~   58 (202)
T PF06818_consen   17 QQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQ   58 (202)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            344444444444444444444444444444444333333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=88.23  E-value=22  Score=35.19  Aligned_cols=51  Identities=22%  Similarity=0.261  Sum_probs=22.1

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHHhccC
Q 013685          329 EADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASMLSTG  382 (438)
Q Consensus       329 ~~~~~~~~~~~~~e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~l~~g  382 (438)
                      ++..-...++++.+.-.....-...|..++...   .+.+.+|......|++++
T Consensus        83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~a---r~~~~~ak~~L~~~~~~~  133 (246)
T PF00769_consen   83 ELREAEAEIARLEEESERKEEEAEELQEELEEA---REDEEEAKEELLEVMSAP  133 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----HTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcc
Confidence            333444444555544444444444444443332   244566666666666654

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=88.18  E-value=27  Score=34.14  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           66 KLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA  109 (438)
Q Consensus        66 e~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~  109 (438)
                      +..+..++..+..+...+..+..++...+.++..+...+.....
T Consensus        62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~  105 (302)
T PF10186_consen   62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS  105 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444443333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=88.03  E-value=35  Score=35.19  Aligned_cols=96  Identities=22%  Similarity=0.261  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHH
Q 013685          198 EVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETEL  277 (438)
Q Consensus       198 i~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l  277 (438)
                      +.++-.++-..+..+..|...+..+..++....++...|...|-         .+..+....-.+-++|...|..-...-
T Consensus       201 v~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv---------dlQ~r~k~~~~EnEeL~q~L~~ske~Q  271 (306)
T PF04849_consen  201 VLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV---------DLQQRCKQLAAENEELQQHLQASKESQ  271 (306)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            44556666667777777777777777777777777777777777         677777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHH
Q 013685          278 QNISEENEMLKLEISKRELDTPNMNSNLAAEVEAAR  313 (438)
Q Consensus       278 ~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~  313 (438)
                      ..|..++.+|+.-..           |..+++..|+
T Consensus       272 ~~L~aEL~elqdkY~-----------E~~~mL~EaQ  296 (306)
T PF04849_consen  272 RQLQAELQELQDKYA-----------ECMAMLHEAQ  296 (306)
T ss_pred             HHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence            777777777766554           6666665554

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK11281 hypothetical protein; Provisional

Probab=87.67  E-value=72  Score=38.42  Aligned_cols=41  Identities=20%  Similarity=0.291  Sum_probs=19.8

Q ss_pred             hhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHH
Q 013685          251 QLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEI  291 (438)
Q Consensus       251 el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI  291 (438)
                      .+-..+..+-.+++.+..+-...+.-++++......++.++
T Consensus       289 ~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi  329 (1113)
T PRK11281        289 QLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQI  329 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.62  E-value=56  Score=37.12  Aligned_cols=17  Identities=35%  Similarity=0.513  Sum_probs=8.4

Q ss_pred             HHHHHHHhhccHHHHhh
Q 013685          211 DIEELKANLMDKETELQ  227 (438)
Q Consensus       211 eLeELka~l~d~E~ELq  227 (438)
                      .++++...+++.-.++.
T Consensus       252 el~~l~~a~~q~~ee~~  268 (716)
T KOG4593|consen  252 ELEELERALSQLREELA  268 (716)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444455555555555

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=87.48  E-value=6.5  Score=38.87  Aligned_cols=75  Identities=20%  Similarity=0.171  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           36 NMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD  110 (438)
Q Consensus        36 elr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e  110 (438)
                      +++..+.+|+.-....++..+++..+++.++++++.++.++..++-+...+...+..+-+++..|....++|+..
T Consensus       132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~  206 (290)
T COG4026         132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG  206 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence            566666666666666666666666667777777766666666666666666666666666666666666666544

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=87.42  E-value=6.7  Score=43.62  Aligned_cols=42  Identities=21%  Similarity=0.281  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           68 SVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEA  109 (438)
Q Consensus        68 ~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~  109 (438)
                      .|..++..+..++.++..|..++++.+..|..|+.++..+..
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r  464 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR  464 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444444444444444444444433333333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.31  E-value=12  Score=36.22  Aligned_cols=80  Identities=9%  Similarity=0.066  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE  101 (438)
Q Consensus        22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE  101 (438)
                      .++..+..+...+.+++.++..+..+-.   ....++.       ..+......+.++...+..+..++..+..++..|+
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~-------~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~  159 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQ-------QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN  159 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566666666666655554322   2222233       33333444455566666666677777777777777


Q ss_pred             HHHHHHHHHh
Q 013685          102 GLVSKLEADT  111 (438)
Q Consensus       102 ~ei~kLe~eI  111 (438)
                      .++..++..+
T Consensus       160 ~~~~~~~~~~  169 (206)
T PRK10884        160 LQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHH
Confidence            7766666543

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=87.26  E-value=72  Score=37.97  Aligned_cols=10  Identities=30%  Similarity=0.597  Sum_probs=6.0

Q ss_pred             ccCCC--CCCCc
Q 013685          119 SQNCS--GDYDL  128 (438)
Q Consensus       119 ~~~~~--~~~~~  128 (438)
                      |.|||  ++.+-
T Consensus       503 GePCPVCGS~~H  514 (1047)
T PRK10246        503 GQPCPLCGSTSH  514 (1047)
T ss_pred             CCCcCCCCcccC
Confidence            56777  55543

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.24  E-value=7.7  Score=39.77  Aligned_cols=85  Identities=25%  Similarity=0.372  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHH
Q 013685          199 VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ  278 (438)
Q Consensus       199 ~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~  278 (438)
                      ..+..++..++.+..++.+.+..++.+-..+..+...|..+..         .+..+-...-...+.+..++.....+++
T Consensus        46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~---------~l~~eE~~~~~~~n~~~~~l~~~~~e~~  116 (314)
T PF04111_consen   46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE---------ELDEEEEEYWREYNELQLELIEFQEERD  116 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444443333333333333333         3333333334444445555555555555


Q ss_pred             HHHHHHHHHHHHHh
Q 013685          279 NISEENEMLKLEIS  292 (438)
Q Consensus       279 ~L~eEieeLKsEI~  292 (438)
                      ++..++.-...++.
T Consensus       117 sl~~q~~~~~~~L~  130 (314)
T PF04111_consen  117 SLKNQYEYASNQLD  130 (314)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555544444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=86.74  E-value=0.81  Score=47.18  Aligned_cols=93  Identities=11%  Similarity=0.129  Sum_probs=1.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI   97 (438)
Q Consensus        18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI   97 (438)
                      ..|-.++++|..++..+..+...+..+...+......+..+...+-.....|..+...+..++..+.++...+..+...|
T Consensus        28 GDLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~l  107 (326)
T PF04582_consen   28 GDLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTL  107 (326)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Confidence            34555666666666666666666555555555444444444444444444444444444444444444444333333333


Q ss_pred             HHHHHHHHHHHHH
Q 013685           98 NLLEGLVSKLEAD  110 (438)
Q Consensus        98 ~~LE~ei~kLe~e  110 (438)
                      ......|..|+..
T Consensus       108 s~h~ssIS~Lqs~  120 (326)
T PF04582_consen  108 SDHSSSISDLQSS  120 (326)
T ss_dssp             ----------HHH
T ss_pred             hhhhhhHHHHHHh
Confidence            3333333333333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=86.49  E-value=43  Score=34.60  Aligned_cols=231  Identities=23%  Similarity=0.249  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHH
Q 013685           70 EALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELS  149 (438)
Q Consensus        70 e~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie  149 (438)
                      +.+...+..+...+..+..+++-.+.+...|..++..|...-..+..            .   .|-.+.--.|.|-..|.
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~------------~---aEqEEE~isN~LlKkl~   87 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQA------------K---AEQEEEFISNTLLKKLQ   87 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H---HHHHHHHHHHHHHHHHH
Confidence            45556666677778888888888888888888888888876555542            1   11222334566777777


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHH-HHHHHHHHHHhhccHHHHhhh
Q 013685          150 SLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQK-AKSDIEELKANLMDKETELQG  228 (438)
Q Consensus       150 ~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~-~~~eLeELka~l~d~E~ELq~  228 (438)
                      .++.+-+.|=-.++.=+..+       |..+...+.+|...|.       +++..|+. ...-+..|...+..++.+...
T Consensus        88 ~l~keKe~L~~~~e~EEE~l-------tn~L~rkl~qLr~EK~-------~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~  153 (310)
T PF09755_consen   88 QLKKEKETLALKYEQEEEFL-------TNDLSRKLNQLRQEKV-------ELENQLEQEQEYLVNKLQKKIERLEKEKSA  153 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776655554322222       2344444444444443       33333333 223344444444444444444


Q ss_pred             hHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHH
Q 013685          229 ISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAE  308 (438)
Q Consensus       229 L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~  308 (438)
                      +...-+.|..+.-     .-|+.|..+   ...=|++|-.       ++..|..+...|...+..--++ +.-+...+--
T Consensus       154 ~q~~le~Lr~EKV-----dlEn~LE~E---QE~lvN~L~K-------qm~~l~~eKr~Lq~~l~~~~s~-~~s~~d~~~~  217 (310)
T PF09755_consen  154 KQEELERLRREKV-----DLENTLEQE---QEALVNRLWK-------QMDKLEAEKRRLQEKLEQPVSA-PPSPRDTVNV  217 (310)
T ss_pred             hHHHHHHHHHHHH-----hHHHHHHHH---HHHHHHHHHH-------HHHHHHHHHHHHHHHHccccCC-CCCcchHHhh
Confidence            4444444443332     111122222   2223444444       4444444555555555542222 1111211100


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHhhHH
Q 013685          309 VEAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCE  353 (438)
Q Consensus       309 ~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~~e~l~a~~~a~~~  353 (438)
                           +-..+...   .++-++..-...++||..||-+++....+
T Consensus       218 -----~~~~Dt~e---~~~shI~~Lr~EV~RLR~qL~~sq~e~~~  254 (310)
T PF09755_consen  218 -----SEENDTAE---RLSSHIRSLRQEVSRLRQQLAASQQEHSE  254 (310)
T ss_pred             -----cccCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 00011112   24455666667788999999999886654

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=85.70  E-value=36  Score=35.75  Aligned_cols=65  Identities=18%  Similarity=0.179  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           51 AQALARETLLQLE-TAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        51 A~~~~eE~~~qLE-~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      ....+++.+-+|. .++..-..=+..+..+..-..++..-+...+..+..|-.++.+.-..|..-+
T Consensus       196 WklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sRE  261 (359)
T PF10498_consen  196 WKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESRE  261 (359)
T ss_pred             HHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444455553 2223333445555555555555555555555555555555555444444444

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=85.62  E-value=71  Score=36.30  Aligned_cols=100  Identities=12%  Similarity=0.021  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC--CCCCCCcchhhhhcccccchHHHHHHHHhhHHHHH
Q 013685           79 AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQN--CSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVG  156 (438)
Q Consensus        79 lee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~--~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~  156 (438)
                      +.+.+..+.--+++++.+.++.-.++..+...|..+...++.+  ++.....   ....+......++...|..++.+..
T Consensus       101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~---D~~dlsl~kLeelr~~L~~L~~ek~  177 (660)
T KOG4302|consen  101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIA---DESDLSLEKLEELREHLNELQKEKS  177 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCccccc---CcccccHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555544444444444444444444322222  1111111   1113334566677777777777766


Q ss_pred             HHHHHHHHHHHhhhhhhhhcHHHHH
Q 013685          157 QLRSALEIAETKLNEGQIQSTVKIK  181 (438)
Q Consensus       157 ~Les~Ie~aE~riqEe~~e~~~elr  181 (438)
                      .--..+......|..+...+..+..
T Consensus       178 ~Rlekv~~~~~~I~~l~~~Lg~~~~  202 (660)
T KOG4302|consen  178 DRLEKVLELKEEIKSLCSVLGLDFS  202 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            6555666666666655554443444

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=85.46  E-value=8.7  Score=32.02  Aligned_cols=91  Identities=21%  Similarity=0.286  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-C---CCCCCCcchhhhhcccccchHHHHHHHHhhHHH
Q 013685           79 AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ-N---CSGDYDLGQKIKENQDTMESKHLEEELSSLKSE  154 (438)
Q Consensus        79 lee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~-~---~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~E  154 (438)
                      +...+..+..++..+...+..++..+..+..-+..+....+. +   ..|+++...+     .++=++.|+..+..+..+
T Consensus         3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~-----~~~~~~~L~~~~~~~~~~   77 (106)
T PF01920_consen    3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQD-----KEEAIEELEERIEKLEKE   77 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEE-----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhh-----HHHHHHHHHHHHHHHHHH
Confidence            345566667777777777777777776666555555431111 1   1134443322     245677889999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhh
Q 013685          155 VGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       155 I~~Les~Ie~aE~riqEe~~  174 (438)
                      |..|+..+..+..++++...
T Consensus        78 i~~l~~~~~~l~~~l~~~~~   97 (106)
T PF01920_consen   78 IKKLEKQLKYLEKKLKELKK   97 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888887655

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=85.29  E-value=48  Score=34.08  Aligned_cols=143  Identities=23%  Similarity=0.243  Sum_probs=95.9

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH---HHH---HHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685          146 EELSSLKSEVGQLRSALEIAETKLNEGQIQST---VKI---KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL  219 (438)
Q Consensus       146 ~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~---~el---r~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l  219 (438)
                      ..++.++....-|...|-.++++++.+.++.-   +.+   .-.++.+++-.+....++.+++.....-+..+..--...
T Consensus       137 ~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq  216 (305)
T PF14915_consen  137 SDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ  216 (305)
T ss_pred             chHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34555666666666666666776666655333   222   225677777778888888888888888888888888888


Q ss_pred             ccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHH-----------HHHHHHHHchhh----HHHHHHHHHHHH
Q 013685          220 MDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLA-----------QAVEDLKANLMD----KETELQNISEEN  284 (438)
Q Consensus       220 ~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~-----------~~Ie~Lka~L~~----le~~l~~L~eEi  284 (438)
                      ..++..|..|..+|--|.-.+.         .+..+-+-..           +-|..|.+.-.-    ++.+-..|..+.
T Consensus       217 es~eERL~QlqsEN~LLrQQLd---------dA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~  287 (305)
T PF14915_consen  217 ESLEERLSQLQSENMLLRQQLD---------DAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINEC  287 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            8899999999999998888887         3333333222           333333332222    566666677777


Q ss_pred             HHHHHHHhhcccc
Q 013685          285 EMLKLEISKRELD  297 (438)
Q Consensus       285 eeLKsEI~~~~~~  297 (438)
                      .-|+..+-.|+.+
T Consensus       288 n~LkEr~~qyEkE  300 (305)
T PF14915_consen  288 NHLKERLYQYEKE  300 (305)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777755

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=84.75  E-value=17  Score=31.45  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccCC---CCCCCcchhhhhcccccchHHHHHHHHhhH
Q 013685           77 MKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL-SQNC---SGDYDLGQKIKENQDTMESKHLEEELSSLK  152 (438)
Q Consensus        77 ~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~-~~~~---~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk  152 (438)
                      ......|..+..++..+...+..++..+.+...-+..+..-. ..+|   .|+|+..++     .++-++.|+.+++.+.
T Consensus         6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~-----~~e~~~~l~~r~e~ie   80 (110)
T TIGR02338         6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTD-----KEEAIQELKEKKETLE   80 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheec-----HHHHHHHHHHHHHHHH
Confidence            344555666666666666666666666666665555554210 0011   144444322     3455678888888888


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhh
Q 013685          153 SEVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       153 ~EI~~Les~Ie~aE~riqEe~~  174 (438)
                      ..|..|...+..+...+.+.+.
T Consensus        81 ~~i~~lek~~~~l~~~l~e~q~  102 (110)
T TIGR02338        81 LRVKTLQRQEERLREQLKELQE  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888777766

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.67  E-value=8.3  Score=37.39  Aligned_cols=31  Identities=19%  Similarity=0.321  Sum_probs=18.3

Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685          140 ESKHLEEELSSLKSEVGQLRSALEIAETKLN  170 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq  170 (438)
                      ..|.+..++..++.++..|+..+..++...+
T Consensus        87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~~~  117 (206)
T PRK10884         87 TTPSLRTRVPDLENQVKTLTDKLNNIDNTWN  117 (206)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            3455566666666666666666666554433

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=84.60  E-value=12  Score=31.76  Aligned_cols=36  Identities=31%  Similarity=0.442  Sum_probs=31.0

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685          139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~  174 (438)
                      .+..+|..+...++.+|..++..+..++.+++....
T Consensus        67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~  102 (108)
T PF02403_consen   67 EDAEELKAEVKELKEEIKELEEQLKELEEELNELLL  102 (108)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577889999999999999999999999988877644

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=84.47  E-value=61  Score=34.57  Aligned_cols=23  Identities=9%  Similarity=0.075  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 013685           90 LERSRTRINLLEGLVSKLEADTS  112 (438)
Q Consensus        90 Lee~~~eI~~LE~ei~kLe~eI~  112 (438)
                      +..+..++..+...+..|.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~rL~a~~~  121 (457)
T TIGR01000        99 KQLLEQQLDNLKDQKKSLDTLKQ  121 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444333

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.39  E-value=15  Score=33.80  Aligned_cols=27  Identities=19%  Similarity=0.195  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHhhccccCcccchhHH
Q 013685          280 ISEENEMLKLEISKRELDTPNMNSNLA  306 (438)
Q Consensus       280 L~eEieeLKsEI~~~~~~~~~~~~e~~  306 (438)
                      +..++..+...+..+......++++-.
T Consensus       121 l~~e~~~l~~kL~~l~~~~~~vs~ee~  147 (169)
T PF07106_consen  121 LEEEIEELEEKLEKLRSGSKPVSPEEK  147 (169)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence            333444444444444443334555433

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=84.09  E-value=74  Score=35.25  Aligned_cols=210  Identities=14%  Similarity=0.159  Sum_probs=118.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 013685           11 KNAESAHLELQSLKGNLIETISLMENMKN----QLRESKESETQAQALARE--------TLLQLETAKLSVEALRAEGMK   78 (438)
Q Consensus        11 ~~~E~a~~ELe~lre~L~~~e~~Ieelr~----qL~dl~~e~~~A~~~~eE--------~~~qLE~ae~~Ie~le~ei~e   78 (438)
                      .+...++..+..++.-++++=++|-++.+    |+.+|+.--.   .++++        +..++..++..+......+..
T Consensus       197 evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr---~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~  273 (570)
T COG4477         197 EVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYR---DMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQ  273 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH---HHHHccCCcccccHHHHHHHHHHHHHHHHhHHHH
Confidence            44556666666666666666666665553    3444442211   11121        455555555555554444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHH
Q 013685           79 AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQL  158 (438)
Q Consensus        79 lee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~L  158 (438)
                      ++         |+..+..+.-+.+.|..+=.-+++--.     +...+... .   +...+-+-+++..-.-++.+|..+
T Consensus       274 Le---------ld~aeeel~~I~e~ie~lYd~lE~Eve-----A~~~V~~~-~---~~l~~~l~k~ke~n~~L~~Eie~V  335 (570)
T COG4477         274 LE---------LDEAEEELGLIQEKIESLYDLLEREVE-----AKNVVEEN-L---PILPDYLEKAKENNEHLKEEIERV  335 (570)
T ss_pred             hh---------hhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhc-C---cchHHHHHHHHHHHHHHHHHHHHH
Confidence            33         444444444444444333222211110     00000000 0   112334556667777788888888


Q ss_pred             HHHHHHHHHhhhhhhhhcH--HHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHH
Q 013685          159 RSALEIAETKLNEGQIQST--VKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGL  236 (438)
Q Consensus       159 es~Ie~aE~riqEe~~e~~--~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L  236 (438)
                      +...--+++++.--+-=.+  .++.+.+..+..........-+.+...++.....|.......+.+-..|++|+++--.-
T Consensus       336 ~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~A  415 (570)
T COG4477         336 KESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEA  415 (570)
T ss_pred             HHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            8887777776542211111  46777788888888888888899999999999988888888888888888887664433


Q ss_pred             HHHhh
Q 013685          237 HMQLD  241 (438)
Q Consensus       237 ~~ei~  241 (438)
                      +..+.
T Consensus       416 re~l~  420 (570)
T COG4477         416 RENLE  420 (570)
T ss_pred             HHHHH
Confidence            33333

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=83.88  E-value=37  Score=31.55  Aligned_cols=167  Identities=21%  Similarity=0.203  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHH
Q 013685           86 IASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIA  165 (438)
Q Consensus        86 l~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~a  165 (438)
                      .+.+++.++-....+...+.+++..+...+..                     ++... --..+.++.+...|...|+.-
T Consensus         4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~l---------------------ge~L~-~iDFeqLkien~~l~~kIeER   61 (177)
T PF13870_consen    4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEEL---------------------GEGLH-LIDFEQLKIENQQLNEKIEER   61 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCccc-HHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666666666530                     00000 135667888888888888877


Q ss_pred             HHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhh-
Q 013685          166 ETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNL-  244 (438)
Q Consensus       166 E~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~-  244 (438)
                      ..++..+..        .+-..-+.-+-...+...+..++..++.+|......+..+..+|..++.++..+...+.+-. 
T Consensus        62 n~eL~~Lk~--------~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~  133 (177)
T PF13870_consen   62 NKELLKLKK--------KIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ  133 (177)
T ss_pred             HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            766665544        33333444555566667777778888888888888888888888888888888877776211 


Q ss_pred             --hhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHH
Q 013685          245 --MCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISE  282 (438)
Q Consensus       245 --~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~e  282 (438)
                        ..-.=|.+=.+.+.....+..++..+..++.+...+..
T Consensus       134 ~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~  173 (177)
T PF13870_consen  134 QGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM  173 (177)
T ss_pred             hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11122455555666666666666666666655555443

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.84  E-value=70  Score=34.77  Aligned_cols=27  Identities=30%  Similarity=0.394  Sum_probs=15.9

Q ss_pred             HHHhhccHH---HHhhhhHHhhHHHHHHhh
Q 013685          215 LKANLMDKE---TELQGISEENEGLHMQLD  241 (438)
Q Consensus       215 Lka~l~d~E---~ELq~L~eEre~L~~ei~  241 (438)
                      .+..++.++   .-++.++.+|+.|..+|+
T Consensus       490 ~k~~l~slEkl~~Dyqairqen~~L~~~iR  519 (521)
T KOG1937|consen  490 QKQYLKSLEKLHQDYQAIRQENDQLFSEIR  519 (521)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555544443   455666677777776664

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=83.78  E-value=21  Score=28.83  Aligned_cols=64  Identities=16%  Similarity=0.084  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           15 SAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK   78 (438)
Q Consensus        15 ~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~e   78 (438)
                      .++.+..+|+..++.+...+.-.-.-+..+..+++.+...+...-.....++.+++.+..++..
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~   65 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE   65 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778888888888888887777777777777777777766666666666666666665443

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=83.66  E-value=13  Score=38.18  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhh
Q 013685          154 EVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEEN  233 (438)
Q Consensus       154 EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEr  233 (438)
                      -+..|+..|-..+.+|.....        .+-+|+|-|+.+--.+.-|...|+.+...+..++....++-.+|.-++...
T Consensus        78 s~r~lk~~l~evEekyrkAMv--------~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~  149 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMV--------SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAH  149 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH--------HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777777776655        466788888877777776666666666666666555544444443333333

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=83.65  E-value=41  Score=32.15  Aligned_cols=103  Identities=18%  Similarity=0.224  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHH
Q 013685           82 AYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSA  161 (438)
Q Consensus        82 ~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~  161 (438)
                      +...++.++..+...+.+|....+-++++|..+.+                     .=-+|++..+|.+|+.++.--+.+
T Consensus        80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s---------------------~Lt~eemQe~i~~L~kev~~~~er  138 (201)
T KOG4603|consen   80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS---------------------ALTTEEMQEEIQELKKEVAGYRER  138 (201)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hcChHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555666666666666667776664                     224788999999999999999999


Q ss_pred             HHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHH
Q 013685          162 LEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEEL  215 (438)
Q Consensus       162 Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeEL  215 (438)
                      |.....-++.---          ++.+++..++..-+.++...-.-++.-++.+
T Consensus       139 l~~~k~g~~~vtp----------edk~~v~~~y~~~~~~wrk~krmf~ei~d~~  182 (201)
T KOG4603|consen  139 LKNIKAGTNHVTP----------EDKEQVYREYQKYCKEWRKRKRMFREIIDKL  182 (201)
T ss_pred             HHHHHHhcccCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988877665432          2333444444444555544433344444433

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=83.65  E-value=61  Score=33.97  Aligned_cols=86  Identities=17%  Similarity=0.208  Sum_probs=51.2

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHH
Q 013685          145 EEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKET  224 (438)
Q Consensus       145 ~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~  224 (438)
                      ..++..+...+...+..+..+..++......      ..+   -.  .....-+..+..+|..++.++.++.....+..-
T Consensus       214 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~------~~~---~~--~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP  282 (444)
T TIGR03017       214 RARLNELSAQLVAAQAQVMDASSKEGGSSGK------DAL---PE--VIANPIIQNLKTDIARAESKLAELSQRLGPNHP  282 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCc------ccc---hh--hhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            3455556666666665555555554321110      000   00  012334566777777888888888887777777


Q ss_pred             HhhhhHHhhHHHHHHhh
Q 013685          225 ELQGISEENEGLHMQLD  241 (438)
Q Consensus       225 ELq~L~eEre~L~~ei~  241 (438)
                      .++.++.+...|+..|.
T Consensus       283 ~v~~l~~~i~~l~~~l~  299 (444)
T TIGR03017       283 QYKRAQAEINSLKSQLN  299 (444)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            78887777777777765

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=83.12  E-value=33  Score=37.15  Aligned_cols=91  Identities=26%  Similarity=0.266  Sum_probs=60.5

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685          141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM  220 (438)
Q Consensus       141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~  220 (438)
                      .+-+++++++-+-=.++.=.+++.       .++   .-.+..|+.+-....++.+.-..+++.-+..+..+..+...+.
T Consensus       323 s~ll~sqleSqr~y~e~~~~e~~q-------sql---en~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~  392 (493)
T KOG0804|consen  323 SPLLTSQLESQRKYYEQIMSEYEQ-------SQL---ENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLK  392 (493)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHH-------HHH---HhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666655555433333332       111   1233445555555556666777788888888999999999999


Q ss_pred             cHHHHhhhhHHhhHHHHHHhh
Q 013685          221 DKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       221 d~E~ELq~L~eEre~L~~ei~  241 (438)
                      +...+|+++++.|..|.....
T Consensus       393 k~~kel~~~~E~n~~l~knq~  413 (493)
T KOG0804|consen  393 KCQKELKEEREENKKLIKNQD  413 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhHH
Confidence            999999999988888876665

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=82.89  E-value=1.1e+02  Score=36.43  Aligned_cols=67  Identities=28%  Similarity=0.359  Sum_probs=31.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685          148 LSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM  220 (438)
Q Consensus       148 ie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~  220 (438)
                      +..+=.||++|++.|.++..+ |.-++..     ..|-+.+..+......|.+++.+|..++..|..+.+..+
T Consensus       406 lKd~~~EIerLK~dl~AaReK-nGvyise-----e~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~  472 (1041)
T KOG0243|consen  406 LKDLYEEIERLKRDLAAAREK-NGVYISE-----ERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM  472 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHhHhh-CceEech-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344556677777777766655 3333311     122222233333344444444444444444444444443

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=82.79  E-value=37  Score=35.01  Aligned_cols=115  Identities=13%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           30 TISLMENMKNQLRESKESETQAQALARE----TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVS  105 (438)
Q Consensus        30 ~e~~Ieelr~qL~dl~~e~~~A~~~~eE----~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~  105 (438)
                      ++.-+.++.-.|..+-+++..++..+..    +-.||+.+=..-..+...++++.+.|+....-+...-..+++.-.+++
T Consensus       239 Ie~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E  318 (384)
T KOG0972|consen  239 IEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIE  318 (384)
T ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            3455666777788888888888877732    677788777778888888888999999998889888889999999999


Q ss_pred             HHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHH
Q 013685          106 KLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSA  161 (438)
Q Consensus       106 kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~  161 (438)
                      .+..+++..+.+.+                 .+...-.|+.-+..++.+...+.=+
T Consensus       319 ~~KqemEe~G~~ms-----------------DGaplvkIkqavsKLk~et~~mnv~  357 (384)
T KOG0972|consen  319 QLKQEMEEQGAKMS-----------------DGAPLVKIKQAVSKLKEETQTMNVQ  357 (384)
T ss_pred             HHHHHHHHhccccc-----------------CCchHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999886321                 1444555555555555555544433

>TIGR02977 phageshock_pspA phage shock protein A

Probab=82.08  E-value=50  Score=31.86  Aligned_cols=51  Identities=12%  Similarity=0.119  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           28 IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK   78 (438)
Q Consensus        28 ~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~e   78 (438)
                      .-+...|.+++..|..++..+.++....-.+..++......+.........
T Consensus        27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~   77 (219)
T TIGR02977        27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAEL   77 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666666666666666555666666666666555554433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=82.04  E-value=38  Score=34.35  Aligned_cols=96  Identities=17%  Similarity=0.157  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           20 LQSLKGNLIETISLMENMKNQLRESKESETQ------AQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERS   93 (438)
Q Consensus        20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~------A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~   93 (438)
                      ...+-..|.++-..+.=||.+|.++-..+.-      +....+.....++..+.+++....++.+.+.++..+...+...
T Consensus       154 ~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~  233 (269)
T PF05278_consen  154 MIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEM  233 (269)
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444445555556666665544222      2222344677777778888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcc
Q 013685           94 RTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        94 ~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      ++++..|+.+-..|...+..+.
T Consensus       234 ~~rl~~l~~~~~~l~k~~~~~~  255 (269)
T PF05278_consen  234 KGRLGELEMESTRLSKTIKSIK  255 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888887777777665555

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=81.92  E-value=47  Score=34.11  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=10.7

Q ss_pred             chHHHHHHHHhhHHHHHHHHHHH
Q 013685          140 ESKHLEEELSSLKSEVGQLRSAL  162 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~Les~I  162 (438)
                      .+..++.++..++..|.....++
T Consensus       243 ~v~~l~~~i~~l~~~i~~e~~~i  265 (362)
T TIGR01010       243 QVPSLQARIKSLRKQIDEQRNQL  265 (362)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHh
Confidence            34444445555555544444443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=81.76  E-value=16  Score=36.84  Aligned_cols=74  Identities=16%  Similarity=0.254  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRT   95 (438)
Q Consensus        22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~   95 (438)
                      .++.-|..+...|..++.++..+..+.......+++...+|++.++.+.+|.+-.=-.+++|+.+..||.++=.
T Consensus       166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~  239 (267)
T PF10234_consen  166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE  239 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            45556666777777777777777777777777777777777777777777777777777777777777666543

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=81.70  E-value=62  Score=32.64  Aligned_cols=58  Identities=16%  Similarity=0.257  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHH
Q 013685           88 SELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEI  164 (438)
Q Consensus        88 ~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~  164 (438)
                      ..+..+..++..|+..|.+.+.++.-+..         +          -+-+||----.|..+...|.+|+..-.+
T Consensus        81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~T---------Y----------kD~EYPvK~vqIa~L~rqlq~lk~~qqd  138 (258)
T PF15397_consen   81 SKLSKLQQQLEQLDAKIQKTQEELNFLST---------Y----------KDHEYPVKAVQIANLVRQLQQLKDSQQD  138 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H----------hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555566666666666666665552         1          1467775555666666666666655443

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=81.66  E-value=68  Score=33.05  Aligned_cols=106  Identities=13%  Similarity=0.234  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHH
Q 013685          179 KIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK  258 (438)
Q Consensus       179 elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~  258 (438)
                      .+...+..+.....-+.+..+..+..+..++.++-..+..+.++.-=|..+..+..--+-.++         +++.-..-
T Consensus       134 kmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~K---------E~e~m~qn  204 (305)
T PF14915_consen  134 KMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIK---------EIEHMYQN  204 (305)
T ss_pred             HhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHh
Confidence            444445555555566677777777777777777777777777776666665555555555554         77777777


Q ss_pred             HHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685          259 LAQAVEDLKANLMDKETELQNISEENEMLKLEISK  293 (438)
Q Consensus       259 ~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~  293 (438)
                      -.+.|...-+.=+.++.++.++..+|--|+.++.+
T Consensus       205 e~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLdd  239 (305)
T PF14915_consen  205 EQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDD  239 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888899999999999999999999999984

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=81.59  E-value=34  Score=32.57  Aligned_cols=31  Identities=16%  Similarity=0.182  Sum_probs=20.4

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 013685          139 MESKHLEEELSSLKSEVGQLRSALEIAETKL  169 (438)
Q Consensus       139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~ri  169 (438)
                      ..+..++.++..++..+.+--+.|..+..=+
T Consensus       135 ~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~  165 (188)
T PF03962_consen  135 EKIEKLKEEIKIAKEAANRWTDNIFSLKSYL  165 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3566667777777777777777776665544

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=81.47  E-value=26  Score=29.76  Aligned_cols=68  Identities=18%  Similarity=0.288  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhH
Q 013685           73 RAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLK  152 (438)
Q Consensus        73 e~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk  152 (438)
                      ..++..+..++..+...+......+..++..+..|..++..-.                       .+|-.+.+-.+.+.
T Consensus         2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kad-----------------------qkyfa~mr~~d~l~   58 (96)
T PF08647_consen    2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKAD-----------------------QKYFAAMRSKDALD   58 (96)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHhHHHHH
Confidence            3566777777777777777777777777777777777665544                       34555555555555


Q ss_pred             HHHHHHHHHHH
Q 013685          153 SEVGQLRSALE  163 (438)
Q Consensus       153 ~EI~~Les~Ie  163 (438)
                      .++..|..-+.
T Consensus        59 ~e~k~L~~~~~   69 (96)
T PF08647_consen   59 NEMKKLNTQLS   69 (96)
T ss_pred             HHHHHHHHHHH
Confidence            55555554443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=81.29  E-value=55  Score=35.13  Aligned_cols=62  Identities=26%  Similarity=0.272  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          180 IKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       180 lr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      ......++....+....+.+.+-+++-.+.++-..+++.+..+|.+|+.|++|+..|..+..
T Consensus        11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v   72 (459)
T KOG0288|consen   11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV   72 (459)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555556666677777788888888999999999999999999999999999988876

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=81.23  E-value=48  Score=31.01  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=11.2

Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHH
Q 013685          139 MESKHLEEELSSLKSEVGQLRSAL  162 (438)
Q Consensus       139 ~Ei~eL~~Eie~lk~EI~~Les~I  162 (438)
                      +++..+..+.+.++.+|+.|+..|
T Consensus        73 ~~~~~lr~~~e~L~~eie~l~~~L   96 (177)
T PF07798_consen   73 SEFAELRSENEKLQREIEKLRQEL   96 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444443

>PRK09343 prefoldin subunit beta; Provisional

Probab=81.20  E-value=27  Score=30.84  Aligned_cols=94  Identities=15%  Similarity=0.126  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccccC-CCCCCCcchhhhhcccccchHHHHHHHHhh
Q 013685           76 GMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR---NLSQN-CSGDYDLGQKIKENQDTMESKHLEEELSSL  151 (438)
Q Consensus        76 i~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~---~~~~~-~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~l  151 (438)
                      +......|..+...+..+...+..++..+.+++.-+..++.   ..+-| ..++|+..++     .++-...|+.+++.+
T Consensus         9 ~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd-----~~e~~~~l~~r~E~i   83 (121)
T PRK09343          9 VQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVD-----KTKVEKELKERKELL   83 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhcc-----HHHHHHHHHHHHHHH
Confidence            33344444455555555555555555555554443333332   11111 1155554433     233446678888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhh
Q 013685          152 KSEVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       152 k~EI~~Les~Ie~aE~riqEe~~  174 (438)
                      ...|..|+...+.+...+.+.+.
T Consensus        84 e~~ik~lekq~~~l~~~l~e~q~  106 (121)
T PRK09343         84 ELRSRTLEKQEKKLREKLKELQA  106 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888777766

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=81.03  E-value=18  Score=31.30  Aligned_cols=87  Identities=14%  Similarity=0.223  Sum_probs=48.9

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH-----HHHHHHHHHH---------HHHHhhhhhcHHHHHHHHHHH
Q 013685          143 HLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST-----VKIKSAFEQL---------EQIKHQSGLREVELEAELQKA  208 (438)
Q Consensus       143 eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~-----~elr~a~E~l---------e~~K~e~~~ri~Ele~eie~~  208 (438)
                      .+-..+..++.++..+-..+..++..+++..+=..     .+-...|..+         +..+.....++..++..|+.+
T Consensus         7 ~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~l   86 (110)
T TIGR02338         7 NQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTL   86 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666666666666666555444222     1222233322         445556666666667777777


Q ss_pred             HHHHHHHHHhhccHHHHhhhh
Q 013685          209 KSDIEELKANLMDKETELQGI  229 (438)
Q Consensus       209 ~~eLeELka~l~d~E~ELq~L  229 (438)
                      +..+..++..+.+++..|+.+
T Consensus        87 ek~~~~l~~~l~e~q~~l~~~  107 (110)
T TIGR02338        87 QRQEERLREQLKELQEKIQEA  107 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777777766666666666654

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=80.64  E-value=1.2e+02  Score=36.10  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=24.0

Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNE  171 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqE  171 (438)
                      ..+.......|+++..+|.-++..|......|.-
T Consensus       440 e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~  473 (1041)
T KOG0243|consen  440 EKEKKEMAEQIEELEEELENLEKQLKDLTELYMN  473 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4456666677777777777777777777777653

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=80.24  E-value=63  Score=31.80  Aligned_cols=154  Identities=19%  Similarity=0.225  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 013685           28 IETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL-ERSRTRINLLEGLVSK  106 (438)
Q Consensus        28 ~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL-ee~~~eI~~LE~ei~k  106 (438)
                      .-++-.|.++...+.++...++++....-.+..+++.+...++.++..-..+-.   .-...| .+.-.++..++..+..
T Consensus        27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~---~g~E~LAr~al~~~~~le~~~~~  103 (225)
T COG1842          27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQ---AGNEDLAREALEEKQSLEDLAKA  103 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            445666777777777777777777777777777777777777666654433322   222222 2233466666666666


Q ss_pred             HHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHH
Q 013685          107 LEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQ  186 (438)
Q Consensus       107 Le~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~  186 (438)
                      ++..+.....                              -...++..|..|+..|..++...+.+....  .-..+.+.
T Consensus       104 ~~~~~~~~~~------------------------------~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~--~~akA~~~  151 (225)
T COG1842         104 LEAELQQAEE------------------------------QVEKLKKQLAALEQKIAELRAKKEALKARK--AAAKAQEK  151 (225)
T ss_pred             HHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            6666555552                              233444444444444444444443333322  22234445


Q ss_pred             HHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh
Q 013685          187 LEQIKHQSGLREVELEAELQKAKSDIEELKAN  218 (438)
Q Consensus       187 le~~K~e~~~ri~Ele~eie~~~~eLeELka~  218 (438)
                      +.......+.  +.....++.++..+++..++
T Consensus       152 v~~~~~~~s~--~sa~~~fer~e~kiee~ea~  181 (225)
T COG1842         152 VNRSLGGGSS--SSAMAAFERMEEKIEEREAR  181 (225)
T ss_pred             HHHHhcCCCc--hhhHHHHHHHHHHHHHHHHH
Confidence            5555554444  56666666777777665544

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=80.10  E-value=18  Score=30.15  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=10.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHhhh
Q 013685          147 ELSSLKSEVGQLRSALEIAETKLN  170 (438)
Q Consensus       147 Eie~lk~EI~~Les~Ie~aE~riq  170 (438)
                      ++..++..+..+...|..++..++
T Consensus         6 ~~~~l~~~l~~~~~q~~~l~~~~~   29 (106)
T PF01920_consen    6 KFQELNQQLQQLEQQIQQLERQLR   29 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444433

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	438
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 66.4 bits (162), Expect = 8e-12
 Identities = 54/317 (17%), Positives = 113/317 (35%), Gaps = 30/317 (9%)

Query: 19   ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK 78
            E   L+  L     L    +         + + + +  E   ++E  +   + L+AE  K
Sbjct: 893  EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952

Query: 79   AIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDT 138
              +       +LE    ++   E    KL+ +   A+  + +       +   I   +D 
Sbjct: 953  MQQ----QMLDLEE---QLEEEEAARQKLQLEKVTADGKIKK-------MEDDILIMED- 997

Query: 139  MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLRE 198
             ++  L +E   L+  V  L + L   E K          K+K+  E +         +E
Sbjct: 998  -QNNKLTKERKLLEERVSDLTTNLAEEEEKAKN-----LTKLKNKHESMISELEVRLKKE 1051

Query: 199  VELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRK 258
             +   EL+K K  +E   ++L ++  ELQ    E +    + ++ L           L  
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL-----QAALARLED 1106

Query: 259  LAQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKE 318
                  +    + + E+ + ++ E+ E  K   +K E        +L+ E+EA ++  ++
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE----KQKRDLSEELEALKTELED 1162

Query: 319  ALMKLGLLMEEADKSNR 335
             L       E      +
Sbjct: 1163 TLDTTATQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 65/360 (18%), Positives = 139/360 (38%), Gaps = 32/360 (8%)

Query: 19   ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMK 78
             L  +     E  +  E ++      +++E + + L ++     E   L  E L+AE   
Sbjct: 848  PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 79   AIEAYSSIASELERSRTRINLLEGLVSKLE------ADTSNANRNLSQNCSGDYDLGQKI 132
              EA         + +    +L  + +++E             + + Q      DL +++
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML---DLEEQL 964

Query: 133  KENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH 192
            +E +   +   L+ E  +   ++ ++   + I E + N+     T + K   E++  +  
Sbjct: 965  EEEEAARQK--LQLEKVTADGKIKKMEDDILIMEDQNNK----LTKERKLLEERVSDLTT 1018

Query: 193  QSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQL 252
                 E E    L K K+  E + + L  +  + +   +E E +  +L+        S L
Sbjct: 1019 NLAEEE-EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES-----SDL 1072

Query: 253  NNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEIS---KRELDTPNMNSNLAAEV 309
            +  + +L   + +LKA L  KE ELQ      E    + +   K+  +  +  S+L  ++
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132

Query: 310  EAARSAEKEALMKLGLLMEEADKSNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWR 369
            E+ ++A  +A  +   L EE +        +  +LE         + ELR    + D  +
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEA-------LKTELEDTLDTT-ATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 12/221 (5%)

Query: 159  RSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN 218
              A +    +  E Q ++  ++K   ++  Q+  +  L + +L+AE +    + EE++  
Sbjct: 859  MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA-EAEEMRVR 917

Query: 219  LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ 278
            L  K+ EL+ I  E     M+       +R  QL  + +K+ Q + DL+  L ++E   Q
Sbjct: 918  LAAKKQELEEILHE-----MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 279  NISEENEMLKLEISKRELDTPNM---NSNLAAEVEAARSAEKEALMKLGLLMEEAD---K 332
             +  E      +I K E D   M   N+ L  E +       +    L    E+A    K
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 333  SNRRAARMAEQLEAAQSANCEAEAELRRLKVQSDQWRKAAE 373
               +   M  +LE       ++  EL ++K + +       
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 67/477 (14%), Positives = 132/477 (27%), Gaps = 136/477 (28%)

Query: 11  KNAESAHLELQSLKGNL----IETISLMENMKNQLR------ESKESETQAQALARETLL 60
            N +   ++    K  L    I+ I + ++  +          SK+ E   + +  E +L
Sbjct: 31  DNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--EEVL 87

Query: 61  QLETAKLSVEALRAEGMKAIEAYSSIASELER-----------SRTRINLLEGLVSKLEA 109
           ++    L +  ++ E  +          + +R           + +R+     L   L  
Sbjct: 88  RINYKFL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 110 DTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETK- 168
                N  +     G    G            K      + +  +V          + K 
Sbjct: 147 LRPAKNVLID----GVLGSG------------K------TWVALDVCLSYKVQCKMDFKI 184

Query: 169 --LNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETEL 226
             LN     S   +    E L+++ +Q               K  I  ++A L      L
Sbjct: 185 FWLNLKNCNSPETV---LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL----RRL 237

Query: 227 QGISEENEGLHMQLDK----------NLMCQ-----RESQLNNDLRKLAQ---AVEDLKA 268
                    L + L            NL C+     R  Q+ + L        +++    
Sbjct: 238 LKSKPYENCL-LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 269 NLMDKETELQNISEENEML--KLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLL 326
            L   E +         +L   L+   ++L  P             R        +L ++
Sbjct: 297 TLTPDEVK--------SLLLKYLDCRPQDL--P-------------REVLTTNPRRLSII 333

Query: 327 MEE-ADKSNR-------RAARMAEQLEAAQSANCEAEAELRRL---------------KV 363
            E   D              ++   +E+  S N    AE R++                +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 364 QSDQWRKAAEAAASMLSTGNNGKCMERSGSIDSNYNPITGKIPLPYSDDIDDDLLKK 420
            S  W    ++   ++      K  + S  ++      T  IP      I  +L  K
Sbjct: 392 LSLIWFDVIKSDVMVVVN----KLHKYS-LVEKQPKESTISIP-----SIYLELKVK 438

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 44/353 (12%), Positives = 96/353 (27%), Gaps = 102/353 (28%)

Query: 3   AESEAAQTKNAESAHLEL--QSLKGN--LIETIS-LMENMKNQLRESKESETQAQALARE 57
            E ++   K  +    +L  + L  N   +  I+  + +        K            
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD------- 353

Query: 58  TLLQLETA-KLSVEALRAEGMKAIEAYSSIA-----------------SELERSRTRINL 99
              +L T  + S+  L     +  + +  ++                  ++ +S   + +
Sbjct: 354 ---KLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV-V 407

Query: 100 LEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLR 159
           +  L        S   +   ++      +  ++K   +   + H               R
Sbjct: 408 VNKLHKY-----SLVEKQPKESTISIPSIYLELKVKLENEYALH---------------R 447

Query: 160 SALEIAETKLNEGQIQSTVKIKSAFEQLEQIK-------------HQSGLREVELEAELQ 206
           S ++                I   F+  + I              H   +   E     +
Sbjct: 448 SIVD-------------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 207 KAKSDIEELKANLMDKETELQGISEENEGLHMQLD--KNLMCQRESQLNNDLRKLAQAVE 264
               D   L+  +    T           L  QL   K  +C       ND  K  + V 
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYICD------ND-PKYERLVN 546

Query: 265 DLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEK 317
            +   L   E  L   S+  ++L++ +         M  + A   EA +  ++
Sbjct: 547 AILDFLPKIEENLIC-SKYTDLLRIAL---------MAEDEAIFEEAHKQVQR 589

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 39/219 (17%)

Query: 1    MVAESEAAQTKNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLL 60
            M+A+ E  + K    +    + L   L       EN   QL+   + + +      E + 
Sbjct: 900  MMAKRELKKLKIEARSVERYKKLHIGL-------ENKIMQLQRKIDEQNKEYKSLLEKMN 952

Query: 61   QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ 120
             LE           +    +E       E + +  R+  L+  ++KL  +          
Sbjct: 953  NLEITY---STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT---- 1005

Query: 121  NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKI 180
                               E K +EE     K E  QL S L+   T L   + +   +I
Sbjct: 1006 -------------------EKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046

Query: 181  KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL 219
                +++ +   +      +L  E ++ + D+ + +   
Sbjct: 1047 HDQAKEITETMEK------KLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 29/246 (11%), Positives = 81/246 (32%), Gaps = 15/246 (6%)

Query: 142  KHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVEL 201
            + + +   +L++ +       +          I     ++    ++   +    +  ++ 
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895

Query: 202  EAELQKAKSDIEELK--ANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKL 259
                  AK ++++LK  A  +++  +L  I  EN+ + +Q   +   +    L   +  L
Sbjct: 896  CYRRMMAKRELKKLKIEARSVERYKKLH-IGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954

Query: 260  AQAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEA 319
                      L      L+   EE +     +   + +   +   L       ++ E+ A
Sbjct: 955  EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014

Query: 320  L---MKLGLLMEEADKSNRRAARMAEQLE---------AAQSANCEAEAELRRLKVQSDQ 367
                 +   L+ E  + N       E+L            ++   +   E ++L++  + 
Sbjct: 1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074

Query: 368  WRKAAE 373
             R   +
Sbjct: 1075 ERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 37/219 (16%), Positives = 82/219 (37%), Gaps = 18/219 (8%)

Query: 174  IQSTVKIKSAFEQLEQIKH-----QSGLR----EVELEAELQKAKSDIEELKANLMDKET 224
            IQ   ++    ++ + ++      Q+ LR      + +  L++ KS I +          
Sbjct: 822  IQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARV 881

Query: 225  ELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQ-NISEE 283
                  +    L     + +M +RE +      +  +  + L   L +K  +LQ  I E+
Sbjct: 882  HYHRTLKAIVYLQCCY-RRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ 940

Query: 284  NEM---LKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM 340
            N+    L  +++  E+        L ++VE  R +E+EA                  A++
Sbjct: 941  NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA----KNATNRVLSLQEEIAKL 996

Query: 341  AEQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASML 379
             ++L   Q+     E    + K +++Q     +   ++L
Sbjct: 997  RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	438
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.38
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.36
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.93
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	98.12
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.97
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.32
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.65
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.39
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.76
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	95.13
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.09
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.38
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.03
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.88
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.58
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.57
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.97
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	92.6
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.56
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	92.09
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.05
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	91.98
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	91.79
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.65
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	90.98
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	90.86
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	90.76
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	90.04
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	89.71
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	89.56
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	89.45
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	89.05
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.6
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.58
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	88.49
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	88.33
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	88.19
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	87.66
3tul_A	158	Cell invasion protein SIPB; translocator, type thr	87.64
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	87.43
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	87.42
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	87.39
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	87.34
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	87.0
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	86.85
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	86.48
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	86.45
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	86.09
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	83.95
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	83.93
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	83.8
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	82.07
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	82.06
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	81.92
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	81.37
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	80.69

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.38  E-value=2e-08  Score=92.68  Aligned_cols=83  Identities=18%  Similarity=0.107  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           26 NLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVS  105 (438)
Q Consensus        26 ~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~  105 (438)
                      ++......++.+..++.++...+..+...+..+...+..+...+..+...+..+...+..+..++......+..++..+.
T Consensus         7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (284)
T 1c1g_A            7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVA   86 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHH
Q 013685          106 KLE  108 (438)
Q Consensus       106 kLe  108 (438)
                      .+.
T Consensus        87 ~~~   89 (284)
T 1c1g_A           87 SLN   89 (284)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.36  E-value=4.4e-08  Score=90.33  Aligned_cols=84  Identities=7%  Similarity=0.054  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           25 GNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLV  104 (438)
Q Consensus        25 e~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei  104 (438)
                      ..++.+...+..+..++..+......+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus        13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (284)
T 1c1g_A           13 LDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRI   92 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             HHHH
Q 013685          105 SKLE  108 (438)
Q Consensus       105 ~kLe  108 (438)
                      ..+.
T Consensus        93 ~~~~   96 (284)
T 1c1g_A           93 QLFE   96 (284)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.09  E-value=2.6e-10  Score=130.96  Aligned_cols=105  Identities=13%  Similarity=0.107  Sum_probs=62.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           11 KNAESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASEL   90 (438)
Q Consensus        11 ~~~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~EL   90 (438)
                      +....+..++..++.++..+...+.++..++..+..+...+...+......+..++..+..+...+..+...+..+..++
T Consensus       857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el  936 (1184)
T 1i84_S          857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI  936 (1184)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788888888888888888888888888888777777766666666666666777666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc
Q 013685           91 ERSRTRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        91 ee~~~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      +.....+..+...+..++.++..+.
T Consensus       937 ee~ee~l~el~~e~~~le~el~~L~  961 (1184)
T 1i84_S          937 EEEEERSQQLQAEKKKMQQQMLDLE  961 (1184)
T ss_dssp             HHHHHC-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666655555444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.93  E-value=1.7e-09  Score=124.28  Aligned_cols=97  Identities=15%  Similarity=0.110  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRI   97 (438)
Q Consensus        18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI   97 (438)
                      .++..+..++..+...+..+...+.++......+......+..++......+..++..+..+...+..+..++..+..++
T Consensus       857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el  936 (1184)
T 1i84_S          857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI  936 (1184)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555555555554444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 013685           98 NLLEGLVSKLEADTSNA  114 (438)
Q Consensus        98 ~~LE~ei~kLe~eI~~~  114 (438)
                      ..++..+..+...+..+
T Consensus       937 ee~ee~l~el~~e~~~l  953 (1184)
T 1i84_S          937 EEEEERSQQLQAEKKKM  953 (1184)
T ss_dssp             HHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=98.12  E-value=0.00051  Score=66.21  Aligned_cols=143  Identities=14%  Similarity=0.119  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhccccc
Q 013685           60 LQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTM  139 (438)
Q Consensus        60 ~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~  139 (438)
                      .++..++..+..+...+..+...+..+..++...+..|..+...+.+.+..+.+...                     .-
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~---------------------~k   90 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS---------------------ER   90 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS---------------------SS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---------------------HH
Confidence            334444444444444444444444444444444455555555555555555543331                     34


Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685          140 ESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL  219 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l  219 (438)
                      ++..|..+|+.++..|..++..|-.+..++...               ..........+..+...+...+.   ++.+.+
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~---------------~~~l~~~~~~l~~~~~~l~~~~~---~~~~~~  152 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRK---------------SEKQEDLKKEMLELEKLALELES---LVENEV  152 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            566666666666666666655555444443332               22222333333333333333332   333445


Q ss_pred             ccHHHHhhhhHHhhHHHHHHhh
Q 013685          220 MDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       220 ~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      .++..++..+..+|..|...|.
T Consensus       153 ~e~~~e~~~l~~~r~~l~~~i~  174 (256)
T 3na7_A          153 KNIKETQQIIFKKKEDLVEKTE  174 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC
Confidence            5566777777777877777776

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.97  E-value=0.00091  Score=64.43  Aligned_cols=161  Identities=12%  Similarity=0.094  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 013685           18 LELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSR--T   95 (438)
Q Consensus        18 ~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~--~   95 (438)
                      -+|+.+-.+|+++...+..+...+.++...+..+...+..+...+..++..+..++.++......+......|....  .
T Consensus        11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~k   90 (256)
T 3na7_A           11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSER   90 (256)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555554432  2


Q ss_pred             HHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhh
Q 013685           96 RINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQ  175 (438)
Q Consensus        96 eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e  175 (438)
                      ++..|..+|..+...+..++                       +++.++..+++.++..+..+...+......+.     
T Consensus        91 E~~aL~kEie~~~~~i~~lE-----------------------~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~-----  142 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQAN-----------------------REIENLQNEIKRKSEKQEDLKKEMLELEKLAL-----  142 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            44444444444444444443                       24455555555555555555555444444433     


Q ss_pred             cHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhh
Q 013685          176 STVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANL  219 (438)
Q Consensus       176 ~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l  219 (438)
                                   ..+.+....+.++..++..+.....++...+
T Consensus       143 -------------~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i  173 (256)
T 3na7_A          143 -------------ELESLVENEVKNIKETQQIIFKKKEDLVEKT  173 (256)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                         3344455555556666665555555555443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.32  E-value=0.019  Score=53.52  Aligned_cols=143  Identities=21%  Similarity=0.195  Sum_probs=108.4

Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKA  217 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka  217 (438)
                      .+++...+..+...+..+.+++..+..--.--.++.    .++...+++++.....+..+...+..++...+..+.....
T Consensus         9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE----~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~   84 (189)
T 2v71_A            9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELE----AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA   84 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555544443222222222    5777788888888888888888888888888888777766


Q ss_pred             h----hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685          218 N----LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK  293 (438)
Q Consensus       218 ~----l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~  293 (438)
                      .    ...+..+|..++..+..|+..|.         ++...-|.+.+..--..+.+.|++.++....+.|.-|.+++..
T Consensus        85 e~~~~~~~Lq~el~~l~~~~~~l~~~ir---------eLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E  155 (189)
T 2v71_A           85 QSYKQVSVLEDDLSQTRAIKEQLHKYVR---------ELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE  155 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6    77888899999999999999998         8888888888888888889999999999999999999998874

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.65  E-value=0.31  Score=61.48  Aligned_cols=205  Identities=14%  Similarity=0.140  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccc
Q 013685           59 LLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDT  138 (438)
Q Consensus        59 ~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~  138 (438)
                      +.-+..-+.-+...+.++......+..--..|.+....|..+..++...+..+......                -...-
T Consensus      1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~e----------------a~~~l 1961 (3245)
T 3vkg_A         1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQ----------------ANQKL 1961 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH
Confidence            44445555555555555555555555555555555555555555555555555444410                00000


Q ss_pred             cchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh
Q 013685          139 MESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN  218 (438)
Q Consensus       139 ~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~  218 (438)
                      .++..=+.+.+..+..+...+..+.....+++..+...+.++..+.=.     .=.+++..++++++...+..|.++++.
T Consensus      1962 ~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa-----~Pkr~~l~~ae~~l~~~~~~L~~~~~~ 2036 (3245)
T 3vkg_A         1962 KQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT-----GPLREEVEQLENAANELKLKQDEIVAT 2036 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011111223334444444444444444444433333222222211110     223456667777777777888888888


Q ss_pred             hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhh
Q 013685          219 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISK  293 (438)
Q Consensus       219 l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~  293 (438)
                      +.+++..|+.|+++-+.+..+..         .++.+......++++...-+..|..+..+=...+..++.++..
T Consensus      2037 L~~le~~l~~L~~~~~~~~~ek~---------~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A         2037 ITALEKSIATYKEEYATLIRETE---------QIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence            88888888777777777776666         7888888888888888888888888888777777788777663

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.39  E-value=0.17  Score=47.01  Aligned_cols=59  Identities=27%  Similarity=0.177  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          183 AFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       183 a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      .+..+...+..+..+|-+++-.-..++...--.-..+.|++..|-..-+.+--|..++.
T Consensus        96 el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A           96 DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555555555555555555555566666666666666655555554

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.76  E-value=0.47  Score=42.72  Aligned_cols=76  Identities=21%  Similarity=0.301  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHH
Q 013685          200 ELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQN  279 (438)
Q Consensus       200 Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~  279 (438)
                      ..+.....+..+|++|-+.|++=-         |...             ..++.+...+..++..|+.++.+.+..+..
T Consensus        76 ~aE~~~~~ie~ElEeLTasLFeEA---------N~MV-------------a~ar~~~~~~e~r~~~L~~ql~e~~~~l~~  133 (154)
T 2ocy_A           76 KAEEEADKLNKEVEDLTASLFDEA---------NNMV-------------ADARKEKYAIEILNKRLTEQLREKDTLLDT  133 (154)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHH---------HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666667777776665321         1111             156777888888999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccc
Q 013685          280 ISEENEMLKLEISKRELD  297 (438)
Q Consensus       280 L~eEieeLKsEI~~~~~~  297 (438)
                      +..++..||.-+.+.+.+
T Consensus       134 lq~ql~~LK~v~~~m~~e  151 (154)
T 2ocy_A          134 LTLQLKNLKKVMHSLDNE  151 (154)
T ss_dssp             HHHHHHHHHHTTSCCC--
T ss_pred             HHHHHHHHHHHHHHhhhc
Confidence            999999999998876654

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.69  E-value=1.1  Score=40.25  Aligned_cols=90  Identities=17%  Similarity=0.195  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhH
Q 013685          151 LKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGIS  230 (438)
Q Consensus       151 lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~  230 (438)
                      +..++.+.+.+++.+++++.++..+.. -.-.-+-.++..-..+.++...++.+|+.+...+.+...+-..-+..++-|.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~-~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLE  104 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELK-TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE  104 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888877766333 1112233344444556667777777777777776666666666666666666


Q ss_pred             HhhHHHHHHhh
Q 013685          231 EENEGLHMQLD  241 (438)
Q Consensus       231 eEre~L~~ei~  241 (438)
                      ...+.|...+.
T Consensus       105 k~id~lEd~L~  115 (155)
T 2efr_A          105 KSIDDLEDELY  115 (155)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666655555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.39  E-value=0.1  Score=54.72  Aligned_cols=77  Identities=14%  Similarity=0.132  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHH
Q 013685          206 QKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENE  285 (438)
Q Consensus       206 e~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEie  285 (438)
                      ..++..+..++.....++.+++.++...+.++.++.         .++.++..++..++..+.++..+..+.+.+..++.
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~  575 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE---------DLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK  575 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh---------hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            334444444444444555555555555444444444         44444444444444444433333334443334444


Q ss_pred             HHHHHH
Q 013685          286 MLKLEI  291 (438)
Q Consensus       286 eLKsEI  291 (438)
                      .|...+
T Consensus       576 ~l~~~~  581 (597)
T 3oja_B          576 QLEAKK  581 (597)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=95.13  E-value=0.12  Score=54.23  Aligned_cols=31  Identities=23%  Similarity=0.263  Sum_probs=14.2

Q ss_pred             chHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 013685          140 ESKHLEEELSSLKSEVGQLRSALEIAETKLN  170 (438)
Q Consensus       140 Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riq  170 (438)
                      ++.++..++..++.++.+.+..+......+.
T Consensus       457 e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~  487 (597)
T 3oja_B          457 EVNELRAEVQQLTNEQIQQEQLLQGLHAEID  487 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444444444444444444444444444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.09  E-value=6.6  Score=49.93  Aligned_cols=26  Identities=12%  Similarity=0.000  Sum_probs=10.6

Q ss_pred             hHHHHHHHHHHHHHHHHchhhHHHHH
Q 013685          252 LNNDLRKLAQAVEDLKANLMDKETEL  277 (438)
Q Consensus       252 l~~el~~~~~~Ie~Lka~L~~le~~l  277 (438)
                      +.+=+..+.++-.+....+..+....
T Consensus      2075 A~~Li~gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A         2075 SIALLDNLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHH
Confidence            33333444444444444444433333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.03  E-value=3.5  Score=37.58  Aligned_cols=52  Identities=29%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHh
Q 013685          141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKH  192 (438)
Q Consensus       141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~  192 (438)
                      +..++..+..+..+..+|-.+|-.++.+.....|..+-+++..--.+++-..
T Consensus       106 l~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~  157 (168)
T 3o0z_A          106 VKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVN  157 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3344455566666777777777777777776666555455544444443333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.88  E-value=1.1  Score=51.30  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=10.9

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHh
Q 013685          145 EEELSSLKSEVGQLRSALEIAETK  168 (438)
Q Consensus       145 ~~Eie~lk~EI~~Les~Ie~aE~r  168 (438)
                      ...+..++.+...|+..+++++..
T Consensus      1022 ~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A         1022 EQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444433

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.58  E-value=1.3  Score=37.73  Aligned_cols=67  Identities=24%  Similarity=0.274  Sum_probs=56.0

Q ss_pred             hccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685          219 LMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENEMLKLEISKR  294 (438)
Q Consensus       219 l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~  294 (438)
                      ...+..+|..|+..++.|+..|+         +|...-|.+.+.---.-+.|.|++.++....+.+.-|.++|...
T Consensus        37 ~~~Lq~El~~lr~~~~~l~~~iR---------eLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EK  103 (111)
T 2v66_B           37 VSVLEDDLSQTRAIKEQLHKYVR---------ELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEK  103 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------HHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466778888888999998888         88888888888777888899999999999999999999998743

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.57  E-value=0.8  Score=52.50  Aligned_cols=22  Identities=14%  Similarity=0.093  Sum_probs=8.8

Q ss_pred             HchhhHHHHHHHHHHHHHHHHH
Q 013685          268 ANLMDKETELQNISEENEMLKL  289 (438)
Q Consensus       268 a~L~~le~~l~~L~eEieeLKs  289 (438)
                      ..+.+++...+.|..++++|..
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.97  E-value=4.1  Score=35.11  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=11.1

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHH
Q 013685          145 EEELSSLKSEVGQLRSALEIAET  167 (438)
Q Consensus       145 ~~Eie~lk~EI~~Les~Ie~aE~  167 (438)
                      ...-..+..+|..|+..|++.+.
T Consensus       103 ~~~kkkle~e~~~Lk~~led~e~  125 (129)
T 2fxo_A          103 TAKKRKLEDECSELKRDIDDLEL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555555443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=92.60  E-value=3.8  Score=33.84  Aligned_cols=94  Identities=14%  Similarity=0.105  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           22 SLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLE  101 (438)
Q Consensus        22 ~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE  101 (438)
                      .++..|.-.-...++.-.+...+......+..........+..+...|..++.++..+.+.+......|+.........+
T Consensus         6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE   85 (101)
T 3u59_A            6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444445555555555555555555555555666666666667777777777777777777777777777777


Q ss_pred             HHHHHHHHHhhhcc
Q 013685          102 GLVSKLEADTSNAN  115 (438)
Q Consensus       102 ~ei~kLe~eI~~~e  115 (438)
                      .+|..|+..|.-++
T Consensus        86 ~evasLnRriqllE   99 (101)
T 3u59_A           86 AEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            77777777765544

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.56  E-value=3.9  Score=33.91  Aligned_cols=89  Identities=12%  Similarity=0.077  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN   98 (438)
Q Consensus        19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~   98 (438)
                      -++.++...+......+.+..++.++.....++       ..++..+...|..++.++..+.+.+......|+.......
T Consensus        10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~-------E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~   82 (101)
T 3u1c_A           10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQL-------EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA   82 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444       4444444444445555555555555555555555555556


Q ss_pred             HHHHHHHHHHHHhhhc
Q 013685           99 LLEGLVSKLEADTSNA  114 (438)
Q Consensus        99 ~LE~ei~kLe~eI~~~  114 (438)
                      ..+..+..|+..|.-+
T Consensus        83 ~aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           83 KAESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666655443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=92.09  E-value=4.5  Score=33.54  Aligned_cols=75  Identities=12%  Similarity=0.086  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLE  108 (438)
Q Consensus        34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe  108 (438)
                      ++-++.++.-++-+...|...++.+..++..++.....++.++..+...+..+..+|+.....+......+..-+
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~e   78 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAE   78 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666666666666666555555555555555555555555555555554444444444333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.05  E-value=1.7  Score=38.22  Aligned_cols=58  Identities=22%  Similarity=0.254  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685           56 RETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN  113 (438)
Q Consensus        56 eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~  113 (438)
                      +.+..+++....+|..+..++..+...++.+..++..++.++..|+..+.+|+..+..
T Consensus        78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~  135 (138)
T 3hnw_A           78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456666666666667777777777777777777777777777777777777665543

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=91.98  E-value=1.3  Score=36.82  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=17.4

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 013685          141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEG  172 (438)
Q Consensus       141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe  172 (438)
                      +..+..++..+...|..|+..+..++.++..+
T Consensus        66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l   97 (112)
T 1l8d_A           66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRI   97 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555554443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=91.79  E-value=5.8  Score=34.13  Aligned_cols=42  Identities=14%  Similarity=0.144  Sum_probs=20.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALA   55 (438)
Q Consensus        14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~   55 (438)
                      .....++..++..+........++......+..+....+..+
T Consensus        16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL   57 (129)
T 2fxo_A           16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQV   57 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555554444444444444333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=90.98  E-value=8.5  Score=34.55  Aligned_cols=86  Identities=20%  Similarity=0.159  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           23 LKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEG  102 (438)
Q Consensus        23 lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~  102 (438)
                      +...|.+.+.+++....++.+|..+...+-.-+-.       ++..-+.....-..+++.+..+...|.....+....+.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKs-------LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AER   98 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKS-------LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER   98 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555444433322211       22222222222233344444444444444444444444


Q ss_pred             HHHHHHHHhhhcc
Q 013685          103 LVSKLEADTSNAN  115 (438)
Q Consensus       103 ei~kLe~eI~~~e  115 (438)
                      .|.+|+..|..++
T Consensus        99 sv~kLEk~id~lE  111 (155)
T 2efr_A           99 SVTKLEKSIDDLE  111 (155)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=90.86  E-value=6  Score=32.62  Aligned_cols=90  Identities=14%  Similarity=0.133  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN   98 (438)
Q Consensus        19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~   98 (438)
                      -++.++...+......+.+..++.++.....++...+..+...+..++..++.....+..+...+...........+.|.
T Consensus        10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~eva   89 (101)
T 3u59_A           10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVA   89 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666666666666666666666666666666666666666666666666666666666666666666666666677777


Q ss_pred             HHHHHHHHHH
Q 013685           99 LLEGLVSKLE  108 (438)
Q Consensus        99 ~LE~ei~kLe  108 (438)
                      +|...|.-|+
T Consensus        90 sLnRriqllE   99 (101)
T 3u59_A           90 SLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            7766665443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=90.76  E-value=7  Score=33.24  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           19 ELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRIN   98 (438)
Q Consensus        19 ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~   98 (438)
                      +++.|..+|...+..+......+.+++.++.+....+           .+|.-|+..+.=+...+..=+..-+.+.+++.
T Consensus        25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l-----------E~I~vLkaQv~IY~~DF~aERadREkl~~eKe   93 (110)
T 2v4h_A           25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM-----------ETVPVLKAQADIYKADFQAERHAREKLVEKKE   93 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHccchhhHHHHHhHHH
Confidence            4556666666666666666666666655555422222           14444444444444444444444555555555


Q ss_pred             HHHHHHHHHHHHhh
Q 013685           99 LLEGLVSKLEADTS  112 (438)
Q Consensus        99 ~LE~ei~kLe~eI~  112 (438)
                      .|...+..|+..+.
T Consensus        94 ~L~~ql~~Lq~q~~  107 (110)
T 2v4h_A           94 YLQEQLEQLQREFN  107 (110)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.04  E-value=2.9  Score=36.79  Aligned_cols=76  Identities=20%  Similarity=0.251  Sum_probs=41.2

Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHH
Q 013685          195 GLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKE  274 (438)
Q Consensus       195 ~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le  274 (438)
                      ..+-...+.....+..+|++|-+.|++=-         |...             ..++.+...+..++..|+.++.+.+
T Consensus        59 ~~~R~~aE~~~~~ie~ElE~LTasLFeEA---------N~MV-------------a~ar~~~~~~e~r~~~L~~ql~e~e  116 (135)
T 2e7s_A           59 NELRTKAEEEADKLNKEVEDLTASLFDEA---------NNLV-------------ADARMEKYAIEILNKRLTEQLREKD  116 (135)
T ss_dssp             TSHHHHHHHTTHHHHHHHHHHHHHHHHHH---------HHHH-------------HHTTHHHHHHHHHHHHHHHTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444556666666677777766665321         1111             1567778888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 013685          275 TELQNISEENEMLKLEIS  292 (438)
Q Consensus       275 ~~l~~L~eEieeLKsEI~  292 (438)
                      ..+..+..++..||.-+.
T Consensus       117 ~ll~~lq~QL~~LK~v~~  134 (135)
T 2e7s_A          117 MLLDTLTLQLKNLKKVMH  134 (135)
T ss_dssp             HCC---------------
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999987654

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=89.71  E-value=5  Score=32.42  Aligned_cols=80  Identities=10%  Similarity=0.115  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013685           34 MENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSN  113 (438)
Q Consensus        34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~  113 (438)
                      |.++|.|+..+..+.++....++-+...+++.+...+.=-.....++..+..++..++..----..|+..|..|..+|.=
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f   81 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF   81 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666666666666555555555555555555555555555555555666665555555555566666666655543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=89.56  E-value=12  Score=34.05  Aligned_cols=94  Identities=13%  Similarity=0.087  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           20 LQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINL   99 (438)
Q Consensus        20 Le~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~   99 (438)
                      |..+...+..--.-..-+|++..++....+.+...+.++...+-.+...-..|+.++..++..+..-+....+....|..
T Consensus        15 L~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~e   94 (168)
T 3o0z_A           15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGD   94 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344333334444455555555555555554544444444444444444444444444444444433333333333


Q ss_pred             HHHHHHHHHHHhhh
Q 013685          100 LEGLVSKLEADTSN  113 (438)
Q Consensus       100 LE~ei~kLe~eI~~  113 (438)
                      |+..|..|..++.+
T Consensus        95 lq~ri~~L~~El~~  108 (168)
T 3o0z_A           95 LQARITSLQEEVKH  108 (168)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=89.45  E-value=5.7  Score=42.04  Aligned_cols=98  Identities=14%  Similarity=0.135  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           29 ETISLMENMKNQLRESKESETQAQALARET----------LLQLETAKLSVE-ALRAEGMKAIEAYSSIASELERSRTRI   97 (438)
Q Consensus        29 ~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~----------~~qLE~ae~~Ie-~le~ei~elee~~~sl~~ELee~~~eI   97 (438)
                      .+...|.+||+++.++.+....+..|+..+          ..+.+....+|- .|+..+.-|.+.+......|..++.-|
T Consensus        61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL  140 (562)
T 3ghg_A           61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV  140 (562)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999998888888442          223333444444 677777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHhhhcccccccCCCCCC
Q 013685           98 NLLEGLVSKLEADTSNANRNLSQNCSGDY  126 (438)
Q Consensus        98 ~~LE~ei~kLe~eI~~~e~~~~~~~~~~~  126 (438)
                      ..+-.+|.+|+-+|.-.-.+--.+|...+
T Consensus       141 edq~~kIQRLEvDIdiqirsCKgsCsr~~  169 (562)
T 3ghg_A          141 RAQLVDMKRLEVDIDIKIRSCRGSCSRAL  169 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTBSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            77777777777777655444445666543

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=89.05  E-value=8.6  Score=32.73  Aligned_cols=97  Identities=25%  Similarity=0.207  Sum_probs=76.0

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcHHHHHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhc
Q 013685          141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQSTVKIKSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLM  220 (438)
Q Consensus       141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~~elr~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~  220 (438)
                      +..|+.....+..|++.++..+.......+-...    .+...+..+...+..+..+|-+|+-.-..++..-----..+.
T Consensus         5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~----~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe   80 (111)
T 2v66_B            5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVS----VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE   80 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence            4567788888888888888888877766555444    666777777788888888888888777777777777778888


Q ss_pred             cHHHHhhhhHHhhHHHHHHhh
Q 013685          221 DKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       221 d~E~ELq~L~eEre~L~~ei~  241 (438)
                      |+++.|-..-+.|--|..++.
T Consensus        81 D~E~k~n~aiErnalLE~El~  101 (111)
T 2v66_B           81 DFEQRLNQAIERNAFLESELD  101 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999988888888888888876

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.60  E-value=5.1  Score=35.18  Aligned_cols=96  Identities=13%  Similarity=0.131  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           20 LQSLKGNLIETISLMENM--KNQLRESKESETQAQALARE---TLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSR   94 (438)
Q Consensus        20 Le~lre~L~~~e~~Ieel--r~qL~dl~~e~~~A~~~~eE---~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~   94 (438)
                      +..+=..++.-...|...  -..++.-.-.+-.|+...++   +..+.+.++..++.+..++..+-..+.+...+++.+.
T Consensus        30 L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~  109 (138)
T 3hnw_A           30 LQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA  109 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444422  44444444444444444444   3344555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHhhhcc
Q 013685           95 TRINLLEGLVSKLEADTSNAN  115 (438)
Q Consensus        95 ~eI~~LE~ei~kLe~eI~~~e  115 (438)
                      .++..|..++..|+..+..++
T Consensus       110 ~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A          110 KEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555554443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.58  E-value=5.1  Score=31.78  Aligned_cols=68  Identities=13%  Similarity=0.118  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           37 MKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLV  104 (438)
Q Consensus        37 lr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei  104 (438)
                      ++.++..++.+...|...++.+..+++.++.....++.++..+...+..+..+++....++......+
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL   71 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL   71 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555554444444444444444444444444443333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=88.49  E-value=1.9  Score=35.01  Aligned_cols=81  Identities=20%  Similarity=0.368  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHHH
Q 013685          206 QKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEENE  285 (438)
Q Consensus       206 e~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEie  285 (438)
                      ..++..|..+...-..+..++.+++..-+.++.++........  .+..++..++..++.+--.-.+++..+++|..+|.
T Consensus         3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~--~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~   80 (86)
T 3swk_A            3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQRE--EAENTLQSFRQDVDNASLARLDLERKVESLQEEIA   80 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444445555666666666666666552222221  45555566666666666666666666666666665


Q ss_pred             HHH
Q 013685          286 MLK  288 (438)
Q Consensus       286 eLK  288 (438)
                      =||
T Consensus        81 fLk   83 (86)
T 3swk_A           81 FLK   83 (86)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.33  E-value=6.1  Score=33.91  Aligned_cols=29  Identities=17%  Similarity=0.281  Sum_probs=12.7

Q ss_pred             HHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685          212 IEELKANLMDKETELQGISEENEGLHMQL  240 (438)
Q Consensus       212 LeELka~l~d~E~ELq~L~eEre~L~~ei  240 (438)
                      +..+...+..++.+|+.++.+-.....++
T Consensus        77 l~~~q~~i~~lE~eL~~~r~e~~~ql~EY  105 (129)
T 3tnu_B           77 LKDARNKLAELEEALQKAKQDMARLLREY  105 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            33344444444445555444444443333

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.19  E-value=14  Score=33.12  Aligned_cols=38  Identities=11%  Similarity=0.165  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHh
Q 013685          181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKAN  218 (438)
Q Consensus       181 r~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~  218 (438)
                      -+.|+++..+-+.....-..++.....++..+.+....
T Consensus        93 asLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~  130 (154)
T 2ocy_A           93 ASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTL  130 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666666554444444443333333333333333

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=87.66  E-value=5.2  Score=33.00  Aligned_cols=94  Identities=11%  Similarity=0.069  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc----ccCCCCCCCcchhhhhcccccchHHHHHHHHhh
Q 013685           76 GMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL----SQNCSGDYDLGQKIKENQDTMESKHLEEELSSL  151 (438)
Q Consensus        76 i~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~----~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~l  151 (438)
                      ...+...|..+..++..+...+..++..+..+..-+..+..-.    .+..-|.|+..+     -.++=++.|...++.+
T Consensus         8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~-----~~~ea~~~L~~~~e~i   82 (117)
T 2zqm_A            8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKT-----TKDKAVAELKEKIETL   82 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEE-----CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhc-----cHHHHHHHHHHHHHHH
Confidence            3344556666666777777777777777766666555554210    011113333332     2355678888899999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhh
Q 013685          152 KSEVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       152 k~EI~~Les~Ie~aE~riqEe~~  174 (438)
                      ...|..|...+..+..++.+.+.
T Consensus        83 e~~i~~le~~~~~l~~~l~~lk~  105 (117)
T 2zqm_A           83 EVRLNALERQEKKLNEKLKELTA  105 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888887766

>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}

Probab=87.64  E-value=7.3  Score=34.79  Aligned_cols=105  Identities=10%  Similarity=0.079  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 013685           41 LRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLSQ  120 (438)
Q Consensus        41 L~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~  120 (438)
                      |+.|...+.-.+.+++--...-+.+-.+-.+.-.+-.++.+.|+.-..-++-....+..+++.+..++..+..+.+    
T Consensus        22 l~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P----   97 (158)
T 3tul_A           22 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDP----   97 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCC----
Confidence            4556666666666665544444445555556666666777778877788888999999999999999999999995    


Q ss_pred             CCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHH
Q 013685          121 NCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIA  165 (438)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~a  165 (438)
                                      .++++.++...++-++.++.+++..++.+
T Consensus        98 ----------------~~P~Yak~~a~~~q~~~d~~~~~~~~~kA  126 (158)
T 3tul_A           98 ----------------ADPGYAQAEAAVEQAGKEATEAKEALDKA  126 (158)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            15678888888888888888888776644

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=87.43  E-value=3.7  Score=33.18  Aligned_cols=48  Identities=17%  Similarity=0.229  Sum_probs=25.1

Q ss_pred             hhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHchhhHHHHHHHHHHHH
Q 013685          228 GISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAVEDLKANLMDKETELQNISEEN  284 (438)
Q Consensus       228 ~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~Ie~Lka~L~~le~~l~~L~eEi  284 (438)
                      +|+++|..|..+..         +++..+..++...+.|+........++..|...+
T Consensus        31 ELKekN~~L~~e~~---------e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~   78 (81)
T 2jee_A           31 ELKEKNNSLSQEVQ---------NAQHQREELERENNHLKEQQNGWQERLQALLGRM   78 (81)
T ss_dssp             HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444444444444         4555555555555555555555555555555443

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=87.42  E-value=10  Score=31.23  Aligned_cols=35  Identities=14%  Similarity=0.189  Sum_probs=16.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           14 ESAHLELQSLKGNLIETISLMENMKNQLRESKESE   48 (438)
Q Consensus        14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~   48 (438)
                      ..+..+++.++..|..+...+..++.++..+...+
T Consensus         6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l   40 (112)
T 1l8d_A            6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAI   40 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555544444444444444444443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.39  E-value=6.5  Score=33.88  Aligned_cols=29  Identities=14%  Similarity=0.193  Sum_probs=12.6

Q ss_pred             HHHHHHhhccHHHHhhhhHHhhHHHHHHh
Q 013685          212 IEELKANLMDKETELQGISEENEGLHMQL  240 (438)
Q Consensus       212 LeELka~l~d~E~ELq~L~eEre~L~~ei  240 (438)
                      +..+...+.+++.+|+.++.+-.....++
T Consensus        79 l~~~q~~i~~lE~eL~~~r~em~~ql~EY  107 (131)
T 3tnu_A           79 LAQIQEMIGSVEEQLAQLRCEMEQQNQEY  107 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444445554444444443333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.34  E-value=3.2  Score=35.70  Aligned_cols=45  Identities=13%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          197 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       197 ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      ........+...+.+|.+++-.+-.++.+|++++..+..|...|.
T Consensus        23 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~   67 (129)
T 3tnu_B           23 TAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA   67 (129)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            334455667778888888888888999999999999988888887

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=87.00  E-value=0.65  Score=49.66  Aligned_cols=135  Identities=19%  Similarity=0.265  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHH
Q 013685          181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLA  260 (438)
Q Consensus       181 r~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~  260 (438)
                      +.+.+.+++.+.++..+...++.+.+..+.+|.+-...-..++.+++...++.+.|..+-.         ++...     
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~---------~~e~~-----  392 (575)
T 2i1j_A          327 IAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQN---------ELQAM-----  392 (575)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-----
Confidence            4456777777888888888888888888888777777777777777777666665554443         22222     


Q ss_pred             HHHHHHHHchhhHHHHHHHHHHHHHHHHHHHhhccccCcccchhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHH
Q 013685          261 QAVEDLKANLMDKETELQNISEENEMLKLEISKRELDTPNMNSNLAAEVEAARSAEKEALMKLGLLMEEADKSNRRAARM  340 (438)
Q Consensus       261 ~~Ie~Lka~L~~le~~l~~L~eEieeLKsEI~~~~~~~~~~~~e~~~~~~~a~~~~~~~~~k~~~~~e~~~~~~~~~~~~  340 (438)
                        +.+|...-+.-..+...|.       .++                         .++.+++..+.++..+..+.+.++
T Consensus       393 --~~~l~~~~~~~~~e~~~l~-------~~~-------------------------~~~~~~~~~~~~~~~~~~~e~~~~  438 (575)
T 2i1j_A          393 --MQRLEETKNMEAAERQKLE-------DEI-------------------------RAKQEEVSRIQQEVELKDSETRRL  438 (575)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --HHHHHHHHHhHHHHHHHHH-------HHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2222222221111222111       111                         123344556667777777777888


Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhh
Q 013685          341 AEQLEAAQSANCEAEAELRRLKV  363 (438)
Q Consensus       341 ~e~l~a~~~a~~~~eae~~rl~v  363 (438)
                      .++|..|+.+......+|...-.
T Consensus       439 ~~~~~~a~~~~~~~~~~l~~~~~  461 (575)
T 2i1j_A          439 QEEVEDARRKQDEAAAALLAATT  461 (575)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            88888888877777777755444

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=86.85  E-value=8.1  Score=31.82  Aligned_cols=74  Identities=14%  Similarity=0.304  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHH-------HHHHHHchhhHHHH
Q 013685          204 ELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQA-------VEDLKANLMDKETE  276 (438)
Q Consensus       204 eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~-------Ie~Lka~L~~le~~  276 (438)
                      .++.+...|..++.....+-.+|..|..++..+..+|.         .++.+...++..       .+.+..++..+...
T Consensus         5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~---------~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE   75 (96)
T 3q8t_A            5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLE---------KVQAEAERLDQEEAQYQREYSEFKRQQLELDDE   75 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777777777777777777777777777777         555555555443       44444444444444


Q ss_pred             HHHHHHHHHH
Q 013685          277 LQNISEENEM  286 (438)
Q Consensus       277 l~~L~eEiee  286 (438)
                      +++|..++.-
T Consensus        76 ~~Sl~~q~~~   85 (96)
T 3q8t_A           76 LKSVENQMRY   85 (96)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=86.48  E-value=4.3  Score=36.03  Aligned_cols=81  Identities=14%  Similarity=0.150  Sum_probs=40.8

Q ss_pred             HHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH
Q 013685          184 FEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLDKNLMCQRESQLNNDLRKLAQAV  263 (438)
Q Consensus       184 ~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~~~~~~~~~~el~~el~~~~~~I  263 (438)
                      .--++++-.....++..++.+|+..+...++---.                     +.         ++..++..+..++
T Consensus        40 ~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrK---------------------ye---------E~~RKl~~~E~dL   89 (147)
T 2b9c_A           40 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRK---------------------YE---------EVARKLVIIESDL   89 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HH---------HHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHh---------------------HH---------HHHHHHHHHHHHH
Confidence            33455555566666666666666655444433222                     22         4444444444555


Q ss_pred             HHHHHchhhHHHHHHHHHHHHHHHHHHHhhc
Q 013685          264 EDLKANLMDKETELQNISEENEMLKLEISKR  294 (438)
Q Consensus       264 e~Lka~L~~le~~l~~L~eEieeLKsEI~~~  294 (438)
                      ++...++...+.+...|..++...-.-++..
T Consensus        90 eraeeRae~aE~k~~eLEeeL~~~~~nlKsL  120 (147)
T 2b9c_A           90 ERAEERAELSEGKCAELEEELKTVTNNLKSL  120 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5555555555555555555555444444433

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=86.45  E-value=10  Score=32.29  Aligned_cols=80  Identities=19%  Similarity=0.198  Sum_probs=39.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           13 AESAHLELQSLKGNLIETISLMENMKNQLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELER   92 (438)
Q Consensus        13 ~E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee   92 (438)
                      ...+...|....+-|..-...|++++..+..++....+    +.=+..|.+--+..-..=+++.+++..+...+..++..
T Consensus        26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~----I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~  101 (110)
T 2v4h_A           26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMET----VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQ  101 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHH
Confidence            34455666666666666667777777766665554432    22233333333333333344444444444444444444


Q ss_pred             HHHH
Q 013685           93 SRTR   96 (438)
Q Consensus        93 ~~~e   96 (438)
                      +..+
T Consensus       102 Lq~q  105 (110)
T 2v4h_A          102 LQRE  105 (110)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=86.09  E-value=2.8  Score=36.24  Aligned_cols=45  Identities=27%  Similarity=0.302  Sum_probs=25.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhHHhhHHHHHHhh
Q 013685          197 REVELEAELQKAKSDIEELKANLMDKETELQGISEENEGLHMQLD  241 (438)
Q Consensus       197 ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~eEre~L~~ei~  241 (438)
                      ........+...+.+|.+++-.+-.++.+|++++..+..|...|.
T Consensus        25 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~   69 (131)
T 3tnu_A           25 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLE   69 (131)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            344455667778888888888888888888888888888888776

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.95  E-value=17  Score=30.17  Aligned_cols=56  Identities=11%  Similarity=0.115  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 013685           61 QLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANR  116 (438)
Q Consensus        61 qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~  116 (438)
                      .++.++..|..++........++..+..+|..-+..-...+.....|+.+++++.+
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa   61 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA   61 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666666666666677777777777666666677777777777777765

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=83.93  E-value=3.1  Score=33.57  Aligned_cols=36  Identities=31%  Similarity=0.426  Sum_probs=26.7

Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhchHHHHHHHHHHHHHh
Q 013685          342 EQLEAAQSANCEAEAELRRLKVQSDQWRKAAEAAASML  379 (438)
Q Consensus       342 e~l~a~~~a~~~~eae~~rl~vq~~qwrkaae~aaa~l  379 (438)
                      -+|.-++.-|.+|.+||++|+.+.+..|  +++++||-
T Consensus        45 skL~eae~rn~eL~~e~~~l~~~~eelq--~~~~~~~~   80 (81)
T 1wt6_A           45 SQLREAEARNRDLEAHVRQLQERMELLQ--AEGATAVT   80 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccchhhcc
Confidence            5889999999999999999999999977  56666663

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=83.80  E-value=8  Score=31.38  Aligned_cols=79  Identities=15%  Similarity=0.248  Sum_probs=42.7

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhcH--------------HHHHHHHHHHHHHHhhhhhcHHHHHHHHH
Q 013685          141 SKHLEEELSSLKSEVGQLRSALEIAETKLNEGQIQST--------------VKIKSAFEQLEQIKHQSGLREVELEAELQ  206 (438)
Q Consensus       141 i~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~e~~--------------~elr~a~E~le~~K~e~~~ri~Ele~eie  206 (438)
                      +..+..++..+...+..++..+...+.-+.++..--.              .....+...++.++..+...|..++..+.
T Consensus        10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~   89 (107)
T 1fxk_A           10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEE   89 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555544444443322100              34555666666666666666666666666


Q ss_pred             HHHHHHHHHHHhh
Q 013685          207 KAKSDIEELKANL  219 (438)
Q Consensus       207 ~~~~eLeELka~l  219 (438)
                      .+...+.+++..+
T Consensus        90 ~~~~~l~~lk~~l  102 (107)
T 1fxk_A           90 RVMKKLQEMQVNI  102 (107)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665544

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=82.07  E-value=6.3  Score=32.05  Aligned_cols=92  Identities=14%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc----ccCCCCCCCcchhhhhcccccchHHHHHHHHhhHH
Q 013685           78 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNL----SQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKS  153 (438)
Q Consensus        78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~----~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~  153 (438)
                      .+...|..+..++..+...+..++..+..+..-+..+..-.    .+..-|+|+...+     .++=.+.|...++.+..
T Consensus         5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~-----~~e~~~~L~~~~e~i~~   79 (107)
T 1fxk_A            5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVA-----KDELTEELQEKLETLQL   79 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEEC-----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhcc-----HHHHHHHHHHHHHHHHH
Confidence            34455666666666666666666666666665444444210    1111144443322     35567888889999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhh
Q 013685          154 EVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       154 EI~~Les~Ie~aE~riqEe~~  174 (438)
                      +|..|...+...+.++.+.+.
T Consensus        80 ~i~~le~~~~~~~~~l~~lk~  100 (107)
T 1fxk_A           80 REKTIERQEERVMKKLQEMQV  100 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888888877665

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.06  E-value=6.8  Score=34.48  Aligned_cols=50  Identities=12%  Similarity=0.205  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHhhccHHHHhhhhH
Q 013685          181 KSAFEQLEQIKHQSGLREVELEAELQKAKSDIEELKANLMDKETELQGIS  230 (438)
Q Consensus       181 r~a~E~le~~K~e~~~ri~Ele~eie~~~~eLeELka~l~d~E~ELq~L~  230 (438)
                      -+.|+++..+-+.....-..++.....++..+.+....+..+...|+.|+
T Consensus        81 asLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK  130 (135)
T 2e7s_A           81 ASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLK  130 (135)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688887777777666666666666655555555555555555555443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=81.92  E-value=19  Score=29.84  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           34 MENMKNQLRESKESETQAQALARETLLQLETAK---LSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEAD  110 (438)
Q Consensus        34 Ieelr~qL~dl~~e~~~A~~~~eE~~~qLE~ae---~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~e  110 (438)
                      |+.+..+|..+.+.....+..++++...+...+   .+|.-|...+.=+.+.+..=+..-+.+.+++..|...+..|...
T Consensus         4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q   83 (94)
T 3jsv_C            4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE   83 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            455555555555555555555555444333333   56666666666666667666666777777777777777777776


Q ss_pred             hhhcc
Q 013685          111 TSNAN  115 (438)
Q Consensus       111 I~~~e  115 (438)
                      +..+.
T Consensus        84 ~~~L~   88 (94)
T 3jsv_C           84 FNKLK   88 (94)
T ss_dssp             TC---
T ss_pred             HHHHH
Confidence            66555

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=81.37  E-value=8.8  Score=30.84  Aligned_cols=63  Identities=19%  Similarity=0.219  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCCCCcchhhhhcccccchHHHHHHHHhhHHHHHHHHHHHHHHH
Q 013685           87 ASELERSRTRINLLEGLVSKLEADTSNANRNLSQNCSGDYDLGQKIKENQDTMESKHLEEELSSLKSEVGQLRSALEIAE  166 (438)
Q Consensus        87 ~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~~~~~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE  166 (438)
                      ..+|+.+..+|..|+..|..|+..+..++.    |.             .....+..|..++..+..++..+..+=+.++
T Consensus        21 qrEle~le~~Ie~LE~~i~~le~~ladp~~----y~-------------~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe   83 (89)
T 2lw1_A           21 QRELEQLPQLLEDLEAKLEALQTQVADASF----FS-------------QPHEQTQKVLADMAAAEQELEQAFERWEYLE   83 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTG----GG-------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCccc----cc-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999988772    00             0134566677777777777777766665444

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=80.69  E-value=8.7  Score=34.43  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHchhhHHHHHHHHHHHHHHH
Q 013685          254 NDLRKLAQAVEDLKANLMDKETELQNISEENEML  287 (438)
Q Consensus       254 ~el~~~~~~Ie~Lka~L~~le~~l~~L~eEieeL  287 (438)
                      +-+..+.+++..|..+++.++.++..+..+|..|
T Consensus        96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L  129 (152)
T 3a7p_A           96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQL  129 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455566666666666666666666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	438
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	89.36
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	87.45
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	84.07
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	82.9
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	82.55

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.36  E-value=1  Score=35.54  Aligned_cols=92  Identities=14%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cCC---CCCCCcchhhhhcccccchHHHHHHHHhhHH
Q 013685           78 KAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLS-QNC---SGDYDLGQKIKENQDTMESKHLEEELSSLKS  153 (438)
Q Consensus        78 elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~-~~~---~~~~~~~~~~~~~l~~~Ei~eL~~Eie~lk~  153 (438)
                      .....|..+..++..+...+..++..+.+.+.-+..+....+ .+|   .|+++...+     .++=+|.|...++.+..
T Consensus         5 e~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~-----~~e~~~~l~~~~e~l~~   79 (107)
T d1fxka_           5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVA-----KDELTEELQEKLETLQL   79 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEEC-----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCc-----HHHHHHHHHHHHHHHHH
Confidence            344556666666666777777777766666665555552110 111   144444432     35667889999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhh
Q 013685          154 EVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       154 EI~~Les~Ie~aE~riqEe~~  174 (438)
                      +|..|...+..++.++++.+.
T Consensus        80 ~i~~l~~q~~~l~~~l~~~~~  100 (107)
T d1fxka_          80 REKTIERQEERVMKKLQEMQV  100 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887765

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=87.45  E-value=1.8  Score=34.00  Aligned_cols=81  Identities=10%  Similarity=-0.052  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 013685           40 QLRESKESETQAQALARETLLQLETAKLSVEALRAEGMKAIEAYSSIASELERSRTRINLLEGLVSKLEADTSNANRNLS  119 (438)
Q Consensus        40 qL~dl~~e~~~A~~~~eE~~~qLE~ae~~Ie~le~ei~elee~~~sl~~ELee~~~eI~~LE~ei~kLe~eI~~~e~~~~  119 (438)
                      ++-.+...+..++..++.+..+...+-..|....      -+....+..++..+..+|..++..+..++.++..+--++|
T Consensus        29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~------~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iP  102 (110)
T d1seta1          29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAP------PEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVP  102 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4445555555555555555555555555553221      1234567788888899999999999999999999998888


Q ss_pred             cCCCCCC
Q 013685          120 QNCSGDY  126 (438)
Q Consensus       120 ~~~~~~~  126 (438)
                      |.++.+|
T Consensus       103 Ni~~~~V  109 (110)
T d1seta1         103 LPPWPGA  109 (110)
T ss_dssp             CCCCTTS
T ss_pred             CCCCccC
Confidence            8888665

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=84.07  E-value=3.7  Score=32.03  Aligned_cols=37  Identities=24%  Similarity=0.225  Sum_probs=29.9

Q ss_pred             ccchHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Q 013685          138 TMESKHLEEELSSLKSEVGQLRSALEIAETKLNEGQI  174 (438)
Q Consensus       138 ~~Ei~eL~~Eie~lk~EI~~Les~Ie~aE~riqEe~~  174 (438)
                      +++..+|..++..++.+|..++..+..++.+++....
T Consensus        63 ~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll   99 (110)
T d1seta1          63 PEEKEALIARGKALGEEAKRLEEALREKEARLEALLL   99 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456678889999999999999999988888877654

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.90  E-value=8.6  Score=29.64  Aligned_cols=23  Identities=13%  Similarity=0.141  Sum_probs=9.3

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHH
Q 013685          145 EEELSSLKSEVGQLRSALEIAET  167 (438)
Q Consensus       145 ~~Eie~lk~EI~~Les~Ie~aE~  167 (438)
                      ...+..+...+..+...+.....
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~   76 (185)
T d2ap3a1          54 GKAVKDLIKNADDRLKEFEKEED   76 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444433333

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.55  E-value=8.1  Score=29.90  Aligned_cols=34  Identities=12%  Similarity=0.178  Sum_probs=17.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013685           14 ESAHLELQSLKGNLIETISLMENMKNQLRESKES   47 (438)
Q Consensus        14 E~a~~ELe~lre~L~~~e~~Ieelr~qL~dl~~e   47 (438)
                      ......++.++..+..+...+..+..++.++..-
T Consensus         4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~v   37 (107)
T d1fxka_           4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKA   37 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555544433