Citrus Sinensis ID: 013689

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEHHcccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHcccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnsvfsaddfsdsflsspspppasfhalpmnrsqSEWELEKFLQEvtvspraissssasdnsvpavigpsvmsksrayeigddDVVEIKkshrdqsldppvipsstapvdsdEYRAYLKTKLDLACAAVAlrtapvkpedksslienqtqaakpselgsqamatgthpkadfrplgsadlpavqarpaaqvrqstsgssredsdddelegdtetiegldsVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTglnplllarsdvpgvgmplvnvpldasrnathpmqpnpnqffhqaipsistptpnhqsldssfpsniqlptvgnpqsdrggknmtetsplqhavglehvpqgvghrvsppgavpgwdtglphagsknnkqr
Flexible Loop (DISEMBL)
mnsvfsaddfsdsflsSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPraissssasdnsvpavigpsvmsksrAYEIGDDDVVEIKKshrdqsldppvipsstapvdsDEYRAYLKTKLDLACAAVALRtapvkpedkssliENQTQAAKPSELGSQAMATGTHPKADFRPLGSADLPAVQarpaaqvrqstsgssredsdddelegdtetiegldsvddkrarrmlsnresarrsrrrkqAHLNEletqagqlraEHSSLLKGLTDvnqkydesavnnrilkadIETLRAKVKMAEEtvkrvtglnplllarsdvpgvGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPgwdtglphagsknnkqr
Low Complexity Region (SEG)
MNSVfsaddfsdsflsspspppasfhalpMNRSQSEWELEKFLQEVTvspraissssasdnsvpavIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATGTHPKADFRPLGSADLpavqarpaaqvrqstsgssredsdddelegdtetiegLDSVDDKRARRMLsnresarrsrrrKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQR
Disordered region (IsUnstruct)
*****************************************************************************************************************YRAYLKTKLDLACAAVALRT*********************************************************************************************************************************************YDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNV*************************************************************************************************************
Disordered Region (DISOPRED)
**SVFSADDFSDSF********************************************************************************************************************************************************************************************************************************SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA**NRILKADIETLR*KVK*********************************************************************************************************************************************
Disordered Region (DISEMBL)
*******************PPPASFHALPMNRSQSEWELEKFLQEVTV***************PAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATGTHPKADFRPLGSADLPA******************************ETIEGLDSVDDKRARRM***************AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSIST*********SSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPH*********
Disordered Region (DISPRO)
*NSVFSADDFSDSFLSS*******************WELEKFLQEVTV********************************************************STAPVDSDEYRAYLKTKLDLACAAVALRTA**************************************************************************************************************AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLD****SNIQLPT*******************Q*AV******QGVGHRVSPPGAVPGWDTGLPHA********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxHSSLLKGLTDVNQKYDESAVNxxxxxxxxxxxxxxxxxxxxxxxxxxxxNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	438	2.2.26 [Sep-21-2011]
Q99090	401	Light-inducible protein C	N/A	no	0.856	0.935	0.445	2e-62
O22763	411	Basic leucine zipper 10 O	yes	no	0.883	0.941	0.416	5e-55
Q9M1G6	403	Basic leucine zipper 25 O	no	no	0.748	0.813	0.462	1e-48
B9DGI8	314	Basic leucine zipper 63 O	no	no	0.641	0.894	0.384	2e-42
Q9FUD3	277	Basic leucine zipper 9 OS	no	no	0.312	0.494	0.482	2e-25
P12959	453	Regulatory protein opaque	N/A	no	0.228	0.220	0.544	7e-24
P23922	349	Transcription factor HBP-	N/A	no	0.168	0.212	0.459	4e-08
Q9SJN0	442	Protein ABSCISIC ACID-INS	no	no	0.171	0.169	0.412	7e-07
P24068	151	Ocs element-binding facto	N/A	no	0.242	0.701	0.344	1e-06
P42777	270	G-box-binding factor 4 OS	no	no	0.127	0.207	0.482	4e-06

>sp|Q99090|CPRF2_PETCR Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2

 Score =  239 bits (611), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 192/431 (44%), Positives = 258/431 (59%), Gaps = 56/431 (12%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           M+ VFS +D SD F S P+   +S   L MNRS SEW  + FLQ+          +SA +
Sbjct: 1   MDRVFSVEDISDQFWSPPAREDSS--KLVMNRSDSEWAFQSFLQQ----------ASALE 48

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAYLKT 120
           +S P    P  ++       GD     +K        +P  IP++  PVDS++Y+AYLK+
Sbjct: 49  SSQPLPSDPVPVA-------GD-----VK--------NPVEIPANV-PVDSEDYQAYLKS 87

Query: 121 KLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATGT-------HPKADF 172
           +LDLACAAVAL R + +KP+D ++L++N +QA+  S+L SQ    G+         K   
Sbjct: 88  RLDLACAAVALTRASSLKPQDSAALLDNGSQASNTSQLVSQVPPKGSGHDLSKEEDKEAL 147

Query: 173 RPLGSADLPAVQARPAAQVRQSTSGSSREDSDDD-ELEGDTETIEGLDSVDDKRARRMLS 231
               +  LPA+Q + A QV+ +TSGSSR+ SDDD ELEG+TET    D  D KR RRMLS
Sbjct: 148 AATATPLLPALQKKSAIQVKSTTSGSSRDHSDDDDELEGETETTRNGDPSDAKRVRRMLS 207

Query: 232 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET 291
           NRESARRSRRRKQAH+ ELETQ  QLR E+SSLLK LTD++Q+Y+++AV+NR+LKADIET
Sbjct: 208 NRESARRSRRRKQAHMTELETQVSQLRVENSSLLKRLTDISQRYNDAAVDNRVLKADIET 267

Query: 292 LRAKVKMAEETVKRVTGLNPLLLAR-SDVPGVGM-PLVNVPLDASRNATHPMQPNPNQFF 349
           +RAKVKMAEETVKRVTGLNP+  +  S++  +GM      P D S + T   Q    Q F
Sbjct: 268 MRAKVKMAEETVKRVTGLNPMFQSMSSEISTIGMQSFSGSPSDTSADTT---QDGSKQHF 324

Query: 350 HQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRG-----GKNMTETSPLQHAVGLE 404
           +Q  P+   P  + Q + +     +Q+P V N Q         G  M  TS +Q    LE
Sbjct: 325 YQPAPTSHMPAQD-QKIQNGL---LQVPPVDNLQQHSASGPVEGNKMERTSSMQRVASLE 380

Query: 405 HVPQGVGHRVS 415
           H+ + +   VS
Sbjct: 381 HLQKRIRGGVS 391

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Petroselinum crispum (taxid: 4043)

>sp|O22763|BZP10_ARATH Basic leucine zipper 10 OS=Arabidopsis thaliana GN=BZIP10 PE=1 SV=2

 Score =  215 bits (548), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 181/435 (41%), Positives = 237/435 (54%), Gaps = 48/435 (11%)

Query: 1   MNSVFSADDFSDSFLSSPSPP--PAS---FHALPMNRSQSEWELEKFLQEVTVSPRAISS 55
           MNS+FS DDFSD F  +P  P  P S     A  +++SQ EW  E FL+E++ S  A+SS
Sbjct: 1   MNSIFSIDDFSDPFWETPPIPLNPDSSKPVTADEVSQSQPEWTFEMFLEEISSS--AVSS 58

Query: 56  SSASDNSVPAVIG----PSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDS 111
               +N+  A++G     S+ S S   +  DD     + S       P  + + T  VDS
Sbjct: 59  EPLGNNN-NAIVGVSSAQSLPSVSGQNDFEDDSRFRDRDSGNLDCAAP--MTTKTVIVDS 115

Query: 112 DEYRAYLKTKLDLACA-AVALRTAPVKPEDKSSLIENQTQAAKPSELGSQAMATGTHPKA 170
           D+YR  LK KL+  CA  V+LR   VKPED +S  E Q Q  + S L    +        
Sbjct: 116 DDYRRVLKNKLETECATVVSLRVGSVKPEDSTSSPETQLQPVQSSPLTQGELGV------ 169

Query: 171 DFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRARRML 230
                 ++ LPA   +    ++Q TSGSSRE SDD++L+ + ET   L   D K++RRML
Sbjct: 170 ------TSSLPAEVKKTGVSMKQVTSGSSREYSDDEDLDEENETTGSLKPEDVKKSRRML 223

Query: 231 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE 290
           SNRESARRSRRRKQ   ++LETQ   L+ EHSSLLK L+++N KYDE+AV NRILKADIE
Sbjct: 224 SNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNRILKADIE 283

Query: 291 TLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFH 350
           TLRAKVKMAEETVKRVTG+NP+LL RS                + N   P+  N      
Sbjct: 284 TLRAKVKMAEETVKRVTGMNPMLLGRSS-------------GHNNNNRMPITGNNRMDSS 330

Query: 351 QAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGV 410
             IP+       H +L+     NI +PT+  P   R G N     P Q +  L+ +  G 
Sbjct: 331 SIIPAYQP----HSNLNHMSNQNIGIPTILPP---RLGNNFA-APPSQTSSPLQRIRNGQ 382

Query: 411 GHRVSPPGAVPGWDT 425
            H V+P     GW+T
Sbjct: 383 NHHVTPSANPYGWNT 397

Transcription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters. Binds to the 5'-ACGT-3' motif of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. Involved in the defense responses to the biotrophic pathogen Hyaloperonospora parasitica and oxidative stress responses; mediates positively cell death.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1G6|BZP25_ARATH Basic leucine zipper 25 OS=Arabidopsis thaliana GN=BZIP25 PE=1 SV=1

 Score =  194 bits (493), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 179/387 (46%), Positives = 224/387 (57%), Gaps = 59/387 (15%)

Query: 1   MNSVFSADDFSDSFL----------SSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSP 50
           M+ VFS DD ++SF           SS +P P    A  M RSQSEW   + + E++ S 
Sbjct: 1   MHIVFSVDDLTESFWPVPAPAPSPGSSSTPSPTQNVADGMTRSQSEWAFHRLINELSGS- 59

Query: 51  RAISSSSASDNSVPAVIGPSVMSKSRAYEIGDD--DVVEIKK--SHRDQSLDP------- 99
                SS + N++     P V S SR  E  D+  DVVEI+K  +HR   +D        
Sbjct: 60  ----DSSPTTNTIERS-PPPVQSLSRLEETVDETEDVVEIQKPQNHRRLPVDDQGKNRNR 114

Query: 100 -----PVIPSSTAPVDSDEYRAYLKTKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKP 154
                PV  S+   VD ++Y A LK+KL+LACAAVA R   VKPED S+   NQ QA   
Sbjct: 115 APSSDPVDSSAPVVVDPNQYHAILKSKLELACAAVARRVGTVKPEDSSASASNQKQAQ-- 172

Query: 155 SELGSQAMATGTHPKAD---FRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGD 211
              GS  +   T P A    F P  S      Q +P    RQ TS SSR+DSDDD+L+GD
Sbjct: 173 ---GS--IVAQTSPGASSVRFSPTTS-----TQKKPDVPARQ-TSISSRDDSDDDDLDGD 221

Query: 212 TETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV 271
            +  +  D    KRARRMLSNRESARRSRRRKQ  +NE +TQ GQLRAEHS+L+  L+D+
Sbjct: 222 ADNGDPTDV---KRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLINRLSDM 278

Query: 272 NQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPL 331
           N KYD +AV+NRIL+ADIETLR KVKMAEETVKRVTG+NPL  +R   P +G+P  N P 
Sbjct: 279 NHKYDAAAVDNRILRADIETLRTKVKMAEETVKRVTGVNPLHWSR---PNMGIPFSNTP- 334

Query: 332 DASRNATHPMQPNPNQFFHQAIPSIST 358
               +A+  + PN N     A  S +T
Sbjct: 335 ----SASSSIPPNSNHILKPANSSTNT 357

Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DGI8|BZP63_ARATH Basic leucine zipper 63 OS=Arabidopsis thaliana GN=BZIP63 PE=1 SV=1

 Score =  173 bits (438), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 148/385 (38%), Positives = 198/385 (51%), Gaps = 104/385 (27%)

Query: 30  MNRSQSEWELEKFLQEVTVSPRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIK 89
           +NRS SEW   +F+QE        SS++A D       G SV S                
Sbjct: 24  LNRSASEWAFNRFIQE--------SSAAADDGESTTACGVSVSS---------------- 59

Query: 90  KSHRDQSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQ 148
                    PP +P     VDS+EYRA+LK+KL+LACAAVA+ R   +KP+D S   +N 
Sbjct: 60  ---------PPNVP-----VDSEEYRAFLKSKLNLACAAVAMKRGTFIKPQDTSGRSDNG 105

Query: 149 TQAAKPSELGSQAMATGTHPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDEL 208
              A  SE  S A +  T       P+ S+ +              TSGS  E S D+E 
Sbjct: 106 --GANESEQASLASSKAT-------PMMSSAI--------------TSGS--ELSGDEE- 139

Query: 209 EGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 268
           E D ET   ++  + KR +RMLSNRESARRSRRRKQAHL+ELETQ  QLR E+S L+KGL
Sbjct: 140 EADGET--NMNPTNVKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGL 197

Query: 269 TDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVN 328
           TDV Q +++++V NR+LKA+IETLRAKVKMAEETVKR+TG NP+               N
Sbjct: 198 TDVTQTFNDASVENRVLKANIETLRAKVKMAEETVKRLTGFNPMFH-------------N 244

Query: 329 VPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTV---GNPQSD 385
           +P                    Q + ++S P+    S D++  S +  P +   GN    
Sbjct: 245 MP--------------------QIVSTVSLPSETSNSPDTT-SSQVTTPEIISSGNKGKA 283

Query: 386 RGGKNMTETSPLQHAVGLEHVPQGV 410
             G  M  T+ ++    LEH+ + +
Sbjct: 284 LIGCKMNRTASMRRVESLEHLQKRI 308

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FUD3|BZIP9_ARATH Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 95/143 (66%), Gaps = 6/143 (4%)

Query: 177 SADLPAVQARPAAQ--VRQSTSGSSREDSDDDELEGDTETIEGLDSVDD-KRARRMLSNR 233
           SAD P    +P  +  VR++TSGSS  +SDD++ E +    E  +  +D KR RRM SNR
Sbjct: 72  SADSPVSANKPEVRGGVRRTTSGSSHVNSDDEDAETEAGQSEMTNDPNDLKRIRRMNSNR 131

Query: 234 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR 293
           ESA+RSRRRKQ +L +LETQ   L+ ++S+L K L D  Q++  +  NNR+LK+D+ETLR
Sbjct: 132 ESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRSAGTNNRVLKSDVETLR 191

Query: 294 AKVKMAEETVKR---VTGLNPLL 313
            KVK+AE+ V R    + LN LL
Sbjct: 192 VKVKLAEDLVARGSLTSSLNQLL 214

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P12959|OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1

 Score =  112 bits (279), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 78/101 (77%), Gaps = 1/101 (0%)

Query: 206 DELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 265
           ++++G+ E I G     ++R R+  SNRESARRSR RK AHL ELE Q  QL+AE+S LL
Sbjct: 210 EDMDGEVE-ILGFKMPTEERVRKKESNRESARRSRYRKAAHLKELEDQVAQLKAENSCLL 268

Query: 266 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV 306
           + +  +NQKY+++ V+NR+L+AD+ETLRAKVKM E+++KRV
Sbjct: 269 RRIAALNQKYNDANVDNRVLRADMETLRAKVKMGEDSLKRV 309

Involved in the regulation of the endosperm-specific production of albumin b-32 and other zein proteins. It is a trans-acting transcriptional activator that binds to the consensus sequence 5'-GATGAYRTGR-3'.

Zea mays (taxid: 4577)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 46/74 (62%)

Query: 216 EGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 275
           E  D  + K+ +R LSNRESARRSR RKQA   EL  +A  L++E+SSL   L  + ++Y
Sbjct: 246 EQWDERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEY 305

Query: 276 DESAVNNRILKADI 289
           +E    N  LKA +
Sbjct: 306 EELLSKNTSLKAKL 319

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q9SJN0|ABI5_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 5/80 (6%)

Query: 204 DDDELEGDTETIEG-LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHS 262
           D   L G    ++G ++ V ++R RRM+ NRESA RSR RKQA+  ELE +  QL+ E++
Sbjct: 336 DMGGLRGRKRVVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENA 395

Query: 263 SLLKGLTDV----NQKYDES 278
            L   L ++     Q+Y ES
Sbjct: 396 QLKHALAELERKRKQQYFES 415

Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth. Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 and Em6 genes promoters. Can also trans-activate its own promoter, suggesting that it is autoregulated. Plays a role in sugar-mediated senescence.

Arabidopsis thaliana (taxid: 3702)

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 13/119 (10%)

Query: 210 GDTETIEGLDSVDD--KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKG 267
           G T   +G DS  D  +R +R LSNRESARRSR RKQ HL+EL  +  +L+A+++ +   
Sbjct: 11  GRTSGSDG-DSAADTHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAAR 69

Query: 268 LTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPL 326
             D+  +Y      N +L+A           A E   R+  +N +L    +  GV M +
Sbjct: 70  ARDIASQYTRVEQENTVLRA----------RAAELGDRLRSVNEVLRLVEEFSGVAMDI 118

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.

Zea mays (taxid: 4577)

>sp|P42777|GBF4_ARATH G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/56 (48%), Positives = 37/56 (66%)

Query: 215 IEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD 270
           +E +D    +R +RM+ NRESA RSR RKQA+  ELET A +L  E+  LLK + +
Sbjct: 180 MEAMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEE 235

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
255559911	441	DNA binding protein, putative [Ricinus c	0.954	0.947	0.479	2e-84
118486477	445	unknown [Populus trichocarpa]	0.970	0.955	0.524	4e-84
444300790	444	bZIP transcription factor family protein	0.890	0.878	0.445	4e-73
225451342	423	PREDICTED: light-inducible protein CPRF2	0.876	0.907	0.452	1e-70
16797791	450	bZIP transcription factor [Nicotiana tab	0.908	0.884	0.431	2e-70
351720703	417	bZIP protein [Glycine max] gi|183014149|	0.897	0.942	0.429	2e-68
147796457	446	hypothetical protein VITISV_022136 [Viti	0.904	0.887	0.449	2e-68
351725229	404	bZIP transcription factor bZIP89 [Glycin	0.876	0.950	0.441	5e-68
225437201	452	PREDICTED: light-inducible protein CPRF2	0.945	0.915	0.434	3e-67
449458456	442	PREDICTED: light-inducible protein CPRF2	0.942	0.934	0.459	2e-66

>gi|255559911|ref|XP_002520974.1| DNA binding protein, putative [Ricinus communis] gi|223539811|gb|EEF41391.1| DNA binding protein, putative [Ricinus communis]

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 221/461 (47%), Positives = 281/461 (60%), Gaps = 43/461 (9%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           MNS+FS DDFSD    +P           M RS SEWELEKFL+E    P + S    ++
Sbjct: 1   MNSIFSVDDFSDLLWQAP-----------MTRSASEWELEKFLEEF---PASSSICDNNN 46

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSH-RDQSLDPPVIPSSTAPVDSDEYRAYLK 119
           N    V  P  ++ S+  EI +D+VVEI+K     Q LD   +P    P D+D Y A+LK
Sbjct: 47  NDTTTVAVPKSLTSSKRREICEDEVVEIEKVEINSQPLDRAPLP---PPEDTDGYHAFLK 103

Query: 120 TKLDLACAAVAL---RTAPVKPED-KSSLIENQTQAAKPSELGSQAMATGTHP------K 169
           ++LDLACAA A    R + VKPE   SS  E+Q    K  E GS  ++   H       +
Sbjct: 104 SQLDLACAAAAAAKSRDSSVKPEGVSSSFAEDQRVINKNCESGSSPVSGNGHGITKGQNE 163

Query: 170 ADFRPLGSADLPAVQARPAAQ---VRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRA 226
           AD    GS  LPA+ + P  Q   VRQ+TSGSSREDSDDDELEGDTET + +D  D+KRA
Sbjct: 164 ADG---GSLRLPALPSMPRKQEVPVRQATSGSSREDSDDDELEGDTETNDNMDPADEKRA 220

Query: 227 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286
           RRM SNRESARRSRRRKQA LNELE Q GQLR E +SLL  LTD+N+K DE++V+NRIL 
Sbjct: 221 RRMQSNRESARRSRRRKQAQLNELEAQVGQLRDERTSLLTRLTDINKKCDEASVDNRILN 280

Query: 287 ADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPN 346
           A+IETLR KVKMAE+ VKRVTGLNP++LARS++P +GM  V    D S N   PMQPN N
Sbjct: 281 ANIETLRTKVKMAEDQVKRVTGLNPMVLARSNMPNMGMQFVAGQTDVSANVAVPMQPNNN 340

Query: 347 QFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVG---- 402
            FFH ++P +++  P+ Q L +S P+N   P       + G  N+   +PLQ   G    
Sbjct: 341 HFFHHSVPDLTSGAPHLQRLSNSCPNNSVTPLATPLPVNNGTSNIGGIAPLQQVTGAQNM 400

Query: 403 -----LEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQR 438
                L+HV +  G  VSPP +V   + GL    +K+NK++
Sbjct: 401 TDVPPLQHVQKQTGPTVSPPASVLICNKGLSQPVAKDNKKK 441

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486477|gb|ABK95078.1| unknown [Populus trichocarpa]

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 240/458 (52%), Positives = 291/458 (63%), Gaps = 33/458 (7%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           MNSVFS DDFSD F  SP P P S  A  MNRS+SEW LEKFLQEV+      ++S +SD
Sbjct: 1   MNSVFSVDDFSDPFWPSPPPSPPS-TAPAMNRSESEWALEKFLQEVS------AASVSSD 53

Query: 61  NSVPAVIGPSVMSKSRAYEI----GDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRA 116
            ++ A   PS +S+S    I    G+D+VVEI K         P+  + T P+DSDEYRA
Sbjct: 54  TNIAA---PSALSQSSTSSIPPENGEDEVVEITKHPNPHPQ--PLGRNLTNPIDSDEYRA 108

Query: 117 YLKTKLDLACAAVAL--RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATG-----THPK 169
           +LK+KLD AC A A+   +  +KPED SSL+E+Q  AA    LG+QA  TG         
Sbjct: 109 FLKSKLDRACTAAAMSRESDVIKPEDFSSLLEDQRLAAGNVSLGTQAFRTGHGISMAQIG 168

Query: 170 ADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRARRM 229
           AD    G   LP  Q +   Q RQ+TSGSSREDSDDD+LEGDT T E  D  D KR RRM
Sbjct: 169 ADGGSPGIPALPTAQKKQEVQTRQTTSGSSREDSDDDDLEGDTGTNENRDPTDAKRVRRM 228

Query: 230 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI 289
            SNRESARRSRRRKQA LNE ETQ GQLR E SSLL   TDV+QK D ++V+NRILKADI
Sbjct: 229 QSNRESARRSRRRKQAQLNERETQVGQLRDERSSLLSRFTDVHQKCDAASVDNRILKADI 288

Query: 290 ETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFF 349
           ETLRAKVKM EE VKRVTGLNP+LL   +VP  GMP V   +DAS N   PMQPNP+QFF
Sbjct: 289 ETLRAKVKMVEEQVKRVTGLNPMLLPGFNVPSPGMPFVGGQVDASTNVAVPMQPNPHQFF 348

Query: 350 HQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVG------- 402
           HQ +  I++  P+ Q L++SFP+N+ LP   NPQ+D G  N    + ++   G       
Sbjct: 349 HQPVHGITSAAPHLQRLNNSFPNNL-LPLATNPQTDNGTSNNGGMASMKLTAGGRGLGAM 407

Query: 403 --LEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQR 438
              + V + VG    P GAVP  D+GLPH   K+ K++
Sbjct: 408 PSTQQVQKQVGSTGGPAGAVPMCDSGLPHVFGKDGKKK 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444300790|gb|AGD98704.1| bZIP transcription factor family protein 6 [Camellia sinensis]

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 207/465 (44%), Positives = 272/465 (58%), Gaps = 75/465 (16%)

Query: 1   MNSVFSADDFSDSFLSSPSP-------------PPASFHALPMNRSQSEWELEKFLQEVT 47
           M+ VFS DD +D F S P+P               +  H   MNRS+SEW  ++FLQE  
Sbjct: 1   MDRVFSVDDMADQFWS-PAPVRLPMTAEEETTSSSSKVHPTMMNRSESEWAFQRFLQE-- 57

Query: 48  VSPRAISSSSASDNSV--PAVIGPSVMSKSRAYEIGDDDVVEIKKS------------HR 93
                     A +N+    +   PS  + + +  I ++DVVEIK              HR
Sbjct: 58  ----------ARNNTTHSESESSPSASAVASSSAIPENDVVEIKDQPQPQPQPQPRAQHR 107

Query: 94  D---------QSLDPPVIPSSTAPVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSS 143
                      S+ PP +P     VDS+EY+A+LK++L+LACAAVAL R + VK ++   
Sbjct: 108 QSTNQQTASFNSVAPPNVP-----VDSEEYQAFLKSRLNLACAAVALTRASFVKSQESPI 162

Query: 144 LIENQTQAAKPSELGSQAMATGTH---PKADFR----PLGSADLPAVQARPAAQVRQSTS 196
           + +N +QA+   +LG QA+  G+    PK   +    PLG   LPA++ +   QV+ +TS
Sbjct: 163 VADNGSQASSTGQLGMQALGEGSGYGLPKGQDKDVIGPLGIPSLPAMEKKSVVQVKSTTS 222

Query: 197 GSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQ 256
           GSSRE SDDDE EG+TET    D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  Q
Sbjct: 223 GSSREQSDDDEAEGETET-NNTDPTDAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQ 281

Query: 257 LRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLAR 316
           LR E+SSLLK L+D++QKY+ESAV+NR+LKAD+ETLRAKVKMAEETVKRVTGLNPL  A 
Sbjct: 282 LRVENSSLLKRLSDISQKYNESAVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLFQAM 341

Query: 317 SDVPGVGMP-LVNVPLDASRNATHPMQPNPN-QFFHQAIPSISTPTPNHQS-LDSSFPSN 373
           SD+  + MP   + P D S +A  P+Q  PN Q F+Q     S    NH S +++ F   
Sbjct: 342 SDMSTMSMPSFADSPSDTSADAAVPVQDVPNQQHFYQ-----SAANNNHMSRIENDF--- 393

Query: 374 IQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPG 418
           + +P+  N Q   G K M  T+ +Q    LEH+ + +    SP G
Sbjct: 394 VDIPSAENEQQSPGNK-MGRTASMQRVASLEHLQKRIRGDASPCG 437

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451342|ref|XP_002279520.1| PREDICTED: light-inducible protein CPRF2-like [Vitis vinifera]

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 204/451 (45%), Positives = 267/451 (59%), Gaps = 67/451 (14%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
           M+ VFS D+  + F +SP    +S     MNRS SEW  ++FLQE +  P + S S++  
Sbjct: 1   MDRVFSVDEIPEQFWASPPS--SSKEPSQMNRSASEWAFQRFLQESSSPPSSSSVSASGP 58

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRD--------------QSLDPPVIPSST 106
           ++                   ++DVVE+K    D               SLDPP      
Sbjct: 59  SA-------------------ENDVVELKVPIDDPKPTPAPPAPPAPATSLDPP----PN 95

Query: 107 APVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATG 165
            P+DS+EY+A+LK++L+LACAAVAL R + VKP+D ++L +  +QA+K S+L SQA   G
Sbjct: 96  VPIDSEEYQAFLKSRLNLACAAVALSRASFVKPQDSAALADTGSQASKTSQLRSQAPCKG 155

Query: 166 TH-------PKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGL 218
           +         K    PLG   LPA+Q +  AQ+R +TS SSRE SDDDE+EG+TETIE +
Sbjct: 156 SGYDLSGAPDKEAGGPLGIPSLPAMQKKAGAQLRPTTSESSREHSDDDEVEGETETIENM 215

Query: 219 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 278
           D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR E+SSLLK LTD++QKY+E+
Sbjct: 216 DPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSSLLKRLTDISQKYNEA 275

Query: 279 AVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGM-PLVNVPLDASRNA 337
           AV+NR+LKAD+ETLRAKVKMAEETVKRVTGLNPL    S++   GM      P D S +A
Sbjct: 276 AVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLFQTMSEISMAGMHSFDGSPSDTSADA 335

Query: 338 THPMQPNPNQFFHQA----IPSISTPTPNHQSLD-SSFPSNIQLPTVGNPQSDRGGKNMT 392
             P+Q  P Q F+ +    + S   P  N+   D SS  S +Q P       ++ G+   
Sbjct: 336 AVPVQDEPKQHFYPSPSDNLISTHDPRINNGLADVSSVESVLQNPAAAGAAGNKMGR--- 392

Query: 393 ETSPLQHAVGLEHV----------PQGVGHR 413
            T+ LQ    LEH+          PQG G++
Sbjct: 393 -TASLQRVASLEHLQKRIRGAVNGPQGSGNQ 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16797791|gb|AAL27150.1| bZIP transcription factor [Nicotiana tabacum]

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 200/463 (43%), Positives = 261/463 (56%), Gaps = 65/463 (14%)

Query: 1   MNSVFSA-DDFSDSFLS----------SPSPPPASFHALPMNRSQSEWELEKFLQEVTVS 49
           M  VFS  DD  D F S          SP+   A  ++  MNRS SEW  ++FLQE T +
Sbjct: 1   MERVFSMEDDIGDHFWSTPPTADLGVDSPTAAAAVSYSKMMNRSSSEWAFQRFLQEATAA 60

Query: 50  PRAISSSSASDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTA-- 107
             + SS             P  M+ S +     +DVVEIK    D++L  P +  STA  
Sbjct: 61  GTSTSSPPQ----------PPTMTASSSSSSHQNDVVEIK----DENLSIPNLNPSTALN 106

Query: 108 ---------------PVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQ-TQ 150
                           VDS+EY+A+LK++L LACAAVAL R   + P+D  S   ++ ++
Sbjct: 107 SKPASSFGLAPPPNIAVDSEEYQAFLKSQLHLACAAVALTRGKSLNPQDSGSTAHDKGSE 166

Query: 151 AAKPSELGSQAMATGT-------HPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDS 203
            A  ++ GS     G+         K    P+G   LP VQ +P  QVR +TSGSSRE S
Sbjct: 167 TASAAQSGSHVSTLGSGQEVAKIQDKDAGGPVGIPSLPPVQKKPVVQVRSTTSGSSREQS 226

Query: 204 DDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSS 263
           DDDE EG+ ET +G+D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR E+SS
Sbjct: 227 DDDEAEGEAETTQGMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSS 286

Query: 264 LLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVG 323
           LLK LTD++QKY+E+AV+NR+LKAD+ETLR KVKMAEETVKRVTGLNPL  A S++  + 
Sbjct: 287 LLKRLTDISQKYNEAAVDNRVLKADVETLRTKVKMAEETVKRVTGLNPLFQAMSEISSMV 346

Query: 324 MP-LVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPT--PNHQSLDSSFPSNIQLPTVG 380
           MP     P D S +A  P+Q +P   ++Q  P+   PT  P  Q+        + +P + 
Sbjct: 347 MPSYSGSPSDTSADAAVPVQDDPKHHYYQQPPNNLMPTHDPRIQN------GMVDVPPIE 400

Query: 381 NPQSD-----RGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPG 418
           N + +      GG  M  T+ +Q    LEH+ + +   VS  G
Sbjct: 401 NVEQNPATAAVGGNKMGRTTSMQRVASLEHLQKRIRGEVSSCG 443

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720703|ref|NP_001237953.1| bZIP protein [Glycine max] gi|183014149|dbj|BAG24402.1| bZIP protein [Glycine max]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 188/438 (42%), Positives = 261/438 (59%), Gaps = 45/438 (10%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFH-ALPMNRSQSEWELEKFLQEVTVSPRAISSSSAS 59
           M+ VFS DD SD F   P  P +  + +  M+RS SEW  ++F+QE + S  +  SSS+ 
Sbjct: 1   MDRVFSVDDISDHFWPPPPIPVSGANTSSQMSRSASEWAFQRFIQEASASAPSPPSSSSP 60

Query: 60  DNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPV--DSDEYRAY 117
            + V   I             G                   V+PS   PV  DS+EY+A+
Sbjct: 61  ADVVFVEIDDQPKPTPPPPSHGG------------------VLPSDPGPVALDSEEYQAF 102

Query: 118 LKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATGTHPKADFR--- 173
           LK+KL+LACAAVA+ R +  K +D S   +  +Q   PS +GSQ  + G+ P  + +   
Sbjct: 103 LKSKLNLACAAVAMTRGSLAKSQDPSPFSDGGSQPTNPSLVGSQTTSKGSIPSGNDQSKL 162

Query: 174 -------PLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRA 226
                  P+G   +PA+Q +PA  +R STSGSSRE SDD+++EG+T   +  D  D KR 
Sbjct: 163 QDKDINAPVGIPSIPAIQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRV 222

Query: 227 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286
           RRMLSNRESARRSRRRKQAHL +LETQ  QLR E+S+LLK LTDV+QKY +SAV+NR+LK
Sbjct: 223 RRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLK 282

Query: 287 ADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVN--VPLDASRNATHPMQPN 344
           AD+ETLRAKVKMAEETVKR+TGLNP+  A SD+  +G+P  +   P D S +A+ P+Q +
Sbjct: 283 ADVETLRAKVKMAEETVKRITGLNPMPHAMSDISSLGLPSFDGRSPSDTSADASVPVQDD 342

Query: 345 PNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDR-----GGKNMTETSPLQH 399
           P+  F+Q  P+++ P P+H  + ++    I   ++ N Q        GG  + +T+ LQ 
Sbjct: 343 PHHHFYQ--PTLNNPIPSHDPIVNNGLGGIS--SIENVQQQNAAAVVGGNKIGQTASLQR 398

Query: 400 AVGLEHVPQGVGHRVSPP 417
              LEH+ + +  R  PP
Sbjct: 399 VASLEHLQKRI--RGGPP 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147796457|emb|CAN74806.1| hypothetical protein VITISV_022136 [Vitis vinifera]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 203/452 (44%), Positives = 265/452 (58%), Gaps = 56/452 (12%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSA-- 58
           M+ VFS D+  + F +SP        +  MNRS SEW  ++FLQE +  P + S S++  
Sbjct: 1   MDRVFSVDEIPEQFWASPPSSSKE-PSSQMNRSASEWAFQRFLQESSSPPSSSSVSASGP 59

Query: 59  -SDNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPVDSDEYRAY 117
            ++N V  +  P            DD            SLDPP       P+DS+EY+A+
Sbjct: 60  SAENDVVELKVPI-----------DDPKPTPAPPAPATSLDPP----PNVPIDSEEYQAF 104

Query: 118 LKTKLDLACAAVAL------------------RTAPVKPEDKSSLIENQTQAAKPSELGS 159
           LK++L+LACAAVAL                  + + VKP+D ++L +  +QA+K S+L S
Sbjct: 105 LKSRLNLACAAVALSRVTVDQLPLPLHKLQIIQASFVKPQDSAALADTGSQASKTSQLRS 164

Query: 160 QAMATGTH-------PKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDT 212
           QA   G+         K    PLG   LPA+Q +  AQ+R +TS SSRE SDDDE+EG+T
Sbjct: 165 QAPCKGSGYDLSGAPDKEAGGPLGIPSLPAMQKKAGAQLRPTTSESSREHSDDDEVEGET 224

Query: 213 ETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN 272
           ETIE +D  D KR RRMLSNRESARRSRRRKQAHL ELETQ  QLR E+SSLLK LTD++
Sbjct: 225 ETIENMDPADAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSSLLKRLTDIS 284

Query: 273 QKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGM-PLVNVPL 331
           QKY+E+AV+NR+LKAD+ETLRAKVKMAEETVKRVTGLNPL    S++   GM      P 
Sbjct: 285 QKYNEAAVDNRVLKADVETLRAKVKMAEETVKRVTGLNPLFQTMSEISMAGMHSFDGSPS 344

Query: 332 DASRNATHPMQPNPNQFFHQAIPS---IST--PTPNHQSLD-SSFPSNIQLPTVGNPQSD 385
           D S +A  P+Q  P Q F+ + PS   IST  P  N+   D SS  S +Q P       +
Sbjct: 345 DTSADAAVPVQDEPKQHFYPS-PSDNLISTHDPRINNGLADVSSVESVLQNPAAAGAAGN 403

Query: 386 RGGKNMTETSPLQHAVGLEHVPQGVGHRVSPP 417
           + G+    T+ LQ    LEH+ + +   V+ P
Sbjct: 404 KMGR----TASLQRVASLEHLQKRIRGAVNGP 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725229|ref|NP_001237085.1| bZIP transcription factor bZIP89 [Glycine max] gi|113367196|gb|ABI34655.1| bZIP transcription factor bZIP89 [Glycine max]

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 188/426 (44%), Positives = 253/426 (59%), Gaps = 42/426 (9%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFH-ALPMNRSQSEWELEKFLQEVTVSPRAISSSSAS 59
           M+ VFS DD SD F   P  P +  + +  M+RS SEW  ++F+QE + S  +  SSS+ 
Sbjct: 1   MDRVFSVDDISDHFWPPPPIPVSGANTSSQMSRSASEWAFQRFIQEASASAPSPPSSSSP 60

Query: 60  DNSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLDPPVIPSSTAPV--DSDEYRAY 117
            + V   I             G                   V+PS   PV  DS+EY+A+
Sbjct: 61  ADVVFVEIDDQPKPTPPPPSHGG------------------VLPSDPGPVALDSEEYQAF 102

Query: 118 LKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAMATGTHP-------- 168
           LK+KL+LACAAVA+ R +  K +D S   E  +Q   PS + SQ  + G+ P        
Sbjct: 103 LKSKLNLACAAVAMTRGSLAKSQDPSPFSEGGSQPTNPSLVESQTTSKGSIPSENDPSKL 162

Query: 169 --KADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRA 226
             K    P+G   +PA+Q +PA  +R STSGSSRE SDD+++EG+T   +  D  D KR 
Sbjct: 163 QDKDTNVPVGIPSIPAMQKKPAVAIRPSTSGSSREQSDDEDIEGETSMNDNTDPADVKRV 222

Query: 227 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK 286
           RRMLSNRESARRSRRRKQAHL +LETQ  QLR E+S+LLK LTDV+QKY +SAV+NR+LK
Sbjct: 223 RRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSDSAVDNRVLK 282

Query: 287 ADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVN--VPLDASRNATHPMQPN 344
           AD+ETLR KVKMAEETVKR+TGLNPLL A SD+  +G+P  +   P D S +A  P+Q +
Sbjct: 283 ADVETLRTKVKMAEETVKRITGLNPLLHAMSDISSLGLPSFDGRSPSDTSADAAVPVQDD 342

Query: 345 PNQFFHQAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDR----GGKNMTETSPLQHA 400
           P+  F+Q  P+ + P P+H  + ++    I   ++ N Q +     GG  M +T+ LQ  
Sbjct: 343 PHHHFYQ--PTSTNPIPSHDPIVNNGLGGIS--SIENVQQNAAVVLGGNKMGQTASLQRV 398

Query: 401 VGLEHV 406
             LEH+
Sbjct: 399 ASLEHL 404

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437201|ref|XP_002281328.1| PREDICTED: light-inducible protein CPRF2-like [Vitis vinifera]

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 206/474 (43%), Positives = 271/474 (57%), Gaps = 60/474 (12%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRA------IS 54
           M SVFS+DD    + +  +   A      M+R  SEW LEKFL E + S  A      +S
Sbjct: 1   MESVFSSDDLEAMWTAVTAGTSAG-----MSRISSEWMLEKFLLEASSSSPASSTSCPVS 55

Query: 55  SSSASDNSVPAVIGPSVMSKSRAYEIG--------DDDVVEIKKSHRDQSLDPPVIPSST 106
           + S        V  P   + + A            DD+VVEIK             PS  
Sbjct: 56  AVSQCPAPYADVTAPYAAAAAAAQSSSSKSRPRGEDDEVVEIKVRSP---------PSDQ 106

Query: 107 APVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPED------------KSSLIENQTQAAK 153
            P +  +++A+L+ +LDLACAAVAL R + VKP++            + S +  QTQ+ K
Sbjct: 107 PPENPVDHQAFLRKRLDLACAAVALSRESGVKPQESAVKPQESAVKPQESALSMQTQS-K 165

Query: 154 PSELGSQAMATG--------THPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDD 205
           PS+LGSQA+AT         T  K +   LG       Q +  AQV  +TSGSSRE SDD
Sbjct: 166 PSQLGSQAVATVDPGHVFPITQDKVEGGSLGIPASATSQNKSGAQVITTTSGSSRELSDD 225

Query: 206 DELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLL 265
           DELEG+T+T   +D  D+KRARRMLSNRESARRSRRRKQ HL+ELETQ  QL  E+SSLL
Sbjct: 226 DELEGETDTTGNMDPADEKRARRMLSNRESARRSRRRKQEHLSELETQVSQLGVENSSLL 285

Query: 266 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMP 325
           K LTD+NQKY+E+AV+NR+LKAD+ETLR KV+MAE+ VKRVTGL  LL A  D+P +GMP
Sbjct: 286 KRLTDINQKYNEAAVDNRVLKADVETLRTKVRMAEDAVKRVTGLTSLLPAIPDIPSMGMP 345

Query: 326 LV-NVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSNI-QLPTVGNPQ 383
            V N   + S +A  P+Q + N F H  +P+     P+ Q L++ FP+N   LPT  +  
Sbjct: 346 FVNNTSSNTSADAAVPVQRDSNHFIHPPVPNNLIAPPHDQRLNNGFPTNCPPLPT-ESLL 404

Query: 384 SDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNKQ 437
           +  G KNM +TSP+Q+   +  V  G     +P G +PGWD+   H  +    Q
Sbjct: 405 NGAGPKNMPQTSPMQN---VSRVCVG----ANPCGVMPGWDSVPSHVTTNIKNQ 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458456|ref|XP_004146963.1| PREDICTED: light-inducible protein CPRF2-like [Cucumis sativus] gi|449503812|ref|XP_004162189.1| PREDICTED: light-inducible protein CPRF2-like [Cucumis sativus]

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 213/464 (45%), Positives = 271/464 (58%), Gaps = 51/464 (10%)

Query: 1   MNSVFSADDFSD-SFLSSPSPPPASFH----------ALPMNRSQSEWELEKFLQEVTVS 49
           M++ FS++D SD SF      P +S            +L MNRS SEW  E+FL+EV+  
Sbjct: 1   MHTFFSSEDLSDNSFWPPQPAPSSSPPSHSPFRSPDPSLTMNRSASEWAFERFLEEVSAL 60

Query: 50  PRAISSSSASDNSVPA---VIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSLD---PPVIP 103
           P     S+ SD    +   V  P+  S +   +  DD++VEIKK+  D       PP  P
Sbjct: 61  PVNSCPSTTSDRVAVSPVDVASPASQSSTSKRDEVDDEIVEIKKADCDHDRSHPIPPSDP 120

Query: 104 SSTAPVDSDEYRAYLKTKLDLACAAVAL-RTAPVKPEDKSSLIENQTQAAKPSELGSQAM 162
           S      S+ YR +LKT+LD+ACAAVAL R A ++P+      +++ Q +   + G QA 
Sbjct: 121 SKMVRSSSERYRVFLKTQLDMACAAVALSRAASLEPQGPVQPTDHRGQTSNAFQFGMQAP 180

Query: 163 ATGT-------HPKADFRPLGSADLPAVQARPAAQVRQSTSGSSREDSDDDELEGDTETI 215
             G+         +    PLG   LPA+  +   Q  Q+TSGSSR++SDDD+LEGD E I
Sbjct: 181 GQGSDRGTSTKESEVSGSPLGIPSLPAMPKKLGVQPAQTTSGSSRDESDDDDLEGDIENI 240

Query: 216 EGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 275
           E +D  D +RARRMLSNRESARRSRRRKQAHLNELETQ GQLR EHS+LLK LTDVNQKY
Sbjct: 241 ENMDPADARRARRMLSNRESARRSRRRKQAHLNELETQVGQLRVEHSTLLKRLTDVNQKY 300

Query: 276 DESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASR 335
           D++AV+NRILKADIETLRAKVKMAEETVKRVTG+NPLL+A S      MP VN       
Sbjct: 301 DDAAVDNRILKADIETLRAKVKMAEETVKRVTGVNPLLVAMSQ---TQMPFVN------- 350

Query: 336 NATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSFPSN---IQLPTVGNPQSDRGGKNMT 392
               PMQ N  QFFHQ + + +   PNHQ+L+   P N   IQ   VG   +D      T
Sbjct: 351 GNQMPMQSN-TQFFHQNMSAFANSPPNHQNLEVPVPPNPPTIQ--HVGRSHNDVA----T 403

Query: 393 ETSPLQHAVGLEHVPQGVGHRVSPPGAVPGWDTGLPHAGSKNNK 436
           E + L  +V ++HV +   H       + GWD    HA   + K
Sbjct: 404 EMTDLP-SVHIDHVQKQPMH-----APMSGWDAEPSHATPNHKK 441

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
TAIR|locus:505006398	403	BZIP25 "basic leucine zipper 2	0.383	0.416	0.445	7.7e-48
TAIR|locus:2184251	314	BZO2H3 "AT5G28770" [Arabidopsi	0.248	0.347	0.522	1.4e-41
TAIR|locus:2149403	277	BZIP9 "AT5G24800" [Arabidopsis	0.232	0.368	0.409	1.8e-12
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.289	0.742	0.255	5.6e-05

TAIR|locus:505006398 BZIP25 "basic leucine zipper 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 81/182 (44%), Positives = 107/182 (58%)

Query:   219 DSVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 278
             D  D KRARRML            KQ  +NE +TQ GQLRAEHS+L+  L+D+N KYD +
Sbjct:   226 DPTDVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLINRLSDMNHKYDAA 285

Query:   279 AVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNAT 338
             AV+NRIL+ADIETLR KVKMAEETVKRVTG+NPL  +R   P +G+P  N P     +A+
Sbjct:   286 AVDNRILRADIETLRTKVKMAEETVKRVTGVNPLHWSR---PNMGIPFSNTP-----SAS 337

Query:   339 HPMQPNPNQFFHQAIPSISTPT--PNHQSLDSS--FPSNIQLPTVGNPQSDRGGKNMTET 394
               + PN N     A  S +T      +Q ++++   P  +    + NP +     N+ ET
Sbjct:   338 SSIPPNSNHILKPANSSTNTSAGLAQNQRVETANFLPEQVNREGMQNPFAP--DSNLYET 395

Query:   395 SP 396
              P
Sbjct:   396 LP 397

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:2000693 "positive regulation of seed maturation" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2184251 BZO2H3 "AT5G28770" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.4e-41, Sum P(3) = 1.4e-41
 Identities = 59/113 (52%), Positives = 80/113 (70%)

Query:   224 KRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR 283
             KR +RML            KQAHL+ELETQ  QLR E+S L+KGLTDV Q +++++V NR
Sbjct:   153 KRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQTFNDASVENR 212

Query:   284 ILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRN 336
             +LKA+IETLRAKVKMAEETVKR+TG NP+     ++P + +  V++P + S +
Sbjct:   213 VLKANIETLRAKVKMAEETVKRLTGFNPMF---HNMPQI-VSTVSLPSETSNS 261

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2149403 BZIP9 "AT5G24800" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 43/105 (40%), Positives = 58/105 (55%)

Query:   219 DSVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 278
             D  D KR RRM             KQ +L +LETQ   L+ ++S+L K L D  Q++  +
Sbjct:   117 DPNDLKRIRRMNSNRESAKRSRRRKQEYLVDLETQVDSLKGDNSTLYKQLIDATQQFRSA 176

Query:   279 AVNNRILKADIETLRAKVKMAEETVKR---VTGLNPLLLARSDVP 320
               NNR+LK+D+ETLR KVK+AE+ V R    + LN LL      P
Sbjct:   177 GTNNRVLKSDVETLRVKVKLAEDLVARGSLTSSLNQLLQTHLSPP 221

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IPI

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 33/129 (25%), Positives = 56/129 (43%)

Query:   220 SVDDKRARRMLXXXXXXXXXXXXKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA 279
             +VD+++ +RML            KQ H+++L  Q  QL  ++  +L  LT  +Q Y +  
Sbjct:    27 TVDERKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQ 86

Query:   280 VNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATH 339
               N +L A +E L  +++   E V  V   N        + G G     V +D   +  +
Sbjct:    87 AENSVLTAQMEELSTRLQSLNEIVDLVQS-NGAGFGVDQIDGCGFDDRTVGIDGYYDDMN 145

Query:   340 PMQPNPNQF 348
              M  N N +
Sbjct:   146 -MMSNVNHW 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.127   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      438       345   0.00097  116 3  11 23  0.49    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  210 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.88u 0.16s 32.04t   Elapsed:  00:00:02
  Total cpu time:  31.88u 0.16s 32.04t   Elapsed:  00:00:02
  Start:  Sat May 11 13:18:06 2013   End:  Sat May 11 13:18:08 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22763	BZP10_ARATH	No assigned EC number	0.4160	0.8835	0.9416	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	438
pfam12498	112	pfam12498, bZIP_C, Basic leucine-zipper C terminal	2e-23
smart00338	65	smart00338, BRLZ, basic region leucin zipper	9e-16
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	2e-11
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	2e-06
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	3e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.004

>gnl|CDD|221605 pfam12498, bZIP_C, Basic leucine-zipper C terminal

 Score = 94.1 bits (234), Expect = 2e-23
 Identities = 49/128 (38%), Positives = 64/128 (50%), Gaps = 16/128 (12%)

Query: 291 TLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFH 350
           TLRAKVKMAE+TVKRVTGLNPLL A S++  +GMP    P DAS +A+ P+Q N + +F 
Sbjct: 1   TLRAKVKMAEDTVKRVTGLNPLLQAISEMSSMGMPFSG-PSDASSDASVPIQDNSSNYFQ 59

Query: 351 QAIPSISTPTPNHQSLDSSFPSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGV 410
           Q   +      + Q         +   T G          M  T  LQ    LEH+ + +
Sbjct: 60  QPAVNPGITVHDDQPE-------LGGATAGGK--------MGRTPSLQRVASLEHLQKRI 104

Query: 411 GHRVSPPG 418
              VS   
Sbjct: 105 RGGVSSST 112

This family of proteins is found in eukaryotes. Proteins in this family are typically between 174 and 411 amino acids in length. The family is found in association with pfam00170. There is a conserved KVK sequence motif. There is a single completely conserved residue K that may be functionally important. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin. Length = 112

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 71.1 bits (175), Expect = 9e-16
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 281
           D+KR RR   NRE+ARRSR RK+A + ELE +  QL AE+  L K +  + ++ ++    
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62

Query: 282 NR 283
             
Sbjct: 63  LE 64

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGL 268
           + KR RR   NRE+ARRSR RK+A++ ELE +  +L AE+ +L   L
Sbjct: 3   ELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSEL 49

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 264
           D RAR+   NRE+ARRSR RK   + +LE +  +L +E+S L
Sbjct: 1   DPRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDL 42

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 266
           D+ R RR   N E+ARRSR +K+    ELE +  +L  E++ L +
Sbjct: 3   DEYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQ 46

Length = 54

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 23/132 (17%)

Query: 188 AAQVRQSTSGSSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNRESARRSRRRK-QAH 246
             ++ +  +   +  ++ +ELE + E        ++++ R  L+   +  +      +A 
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIE--------EERKRRDKLTEEYAELKEELEDLRAE 372

Query: 247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL--------------KADIETL 292
           L E++ +  + R E     + L  + ++ +E       L               A I  +
Sbjct: 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI 432

Query: 293 RAKVKMAEETVK 304
            AK+   EE  +
Sbjct: 433 EAKINELEEEKE 444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 17/83 (20%), Positives = 34/83 (40%)

Query: 228 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA 287
           R LS+  SAR      Q  L EL+ +  +L+ + + L +   ++ Q+          L+ 
Sbjct: 56  RYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQK 115

Query: 288 DIETLRAKVKMAEETVKRVTGLN 310
           ++  ++     A E  +    L 
Sbjct: 116 ELARIKQLSANAIELDEENRELR 138

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	438
PF12498	115	bZIP_C: Basic leucine-zipper C terminal; InterPro:	99.94
smart00338	65	BRLZ basic region leucin zipper.	99.31
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.27
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.26
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.16
KOG3584	348	consensus cAMP response element binding protein an	99.0
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	98.97
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.95
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.02
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.91
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.11
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.1
KOG3119	269	consensus Basic region leucine zipper transcriptio	96.77
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.6
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.4
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.07
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.75
PRK10884	206	SH3 domain-containing protein; Provisional	95.7
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	95.49
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	95.41
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	95.35
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	94.95
PRK13169	110	DNA replication intiation control protein YabA; Re	94.78
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.74
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	94.58
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	94.5
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	94.42
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	94.35
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.28
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.25
PRK13169	110	DNA replication intiation control protein YabA; Re	94.0
PRK11637	428	AmiB activator; Provisional	93.72
PRK10884	206	SH3 domain-containing protein; Provisional	93.7
COG4467	114	Regulator of replication initiation timing [Replic	93.62
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.61
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	93.41
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.34
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.95
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.54
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.46
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.97
PRK11637	428	AmiB activator; Provisional	91.95
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	91.46
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	91.0
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	90.85
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.75
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.72
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	90.61
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	90.29
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	90.26
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	90.09
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	90.03
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	89.9
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	89.8
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	89.73
COG2433	652	Uncharacterized conserved protein [Function unknow	89.61
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.53
COG4026	290	Uncharacterized protein containing TOPRIM domain,	89.47
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	89.43
PRK09039	343	hypothetical protein; Validated	89.43
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.32
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	89.08
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	89.02
TIGR03495	135	phage_LysB phage lysis regulatory protein, LysB fa	88.77
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	88.76
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	88.71
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	88.61
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	88.36
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	88.31
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	88.05
PF14662	193	CCDC155: Coiled-coil region of CCDC155	87.94
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	87.84
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	87.81
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	87.78
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	87.36
PRK00888	105	ftsB cell division protein FtsB; Reviewed	87.18
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.14
PRK04406	75	hypothetical protein; Provisional	87.06
COG4942	420	Membrane-bound metallopeptidase [Cell division and	87.05
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	86.93
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	86.76
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	86.71
PRK02119	73	hypothetical protein; Provisional	86.61
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	86.57
KOG1962	216	consensus B-cell receptor-associated protein and r	86.55
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	86.44
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	86.22
COG4467	114	Regulator of replication initiation timing [Replic	86.2
PF14662	193	CCDC155: Coiled-coil region of CCDC155	86.19
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	86.16
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.05
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	85.89
PHA02562	562	46 endonuclease subunit; Provisional	85.85
PRK09039	343	hypothetical protein; Validated	85.59
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	85.35
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	85.24
PRK04325	74	hypothetical protein; Provisional	85.05
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	84.93
KOG3119	269	consensus Basic region leucine zipper transcriptio	84.76
PRK00846	77	hypothetical protein; Provisional	84.68
PRK05431	425	seryl-tRNA synthetase; Provisional	84.59
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	84.46
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	84.36
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	84.33
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	84.31
PRK02793	72	phi X174 lysis protein; Provisional	84.06
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	84.01
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	83.74
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	83.6
PF15294	278	Leu_zip: Leucine zipper	83.56
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	83.54
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	83.3
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	83.26
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	83.25
smart00338	65	BRLZ basic region leucin zipper.	83.02
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	82.94
smart00340	44	HALZ homeobox associated leucin zipper.	82.9
PRK02119	73	hypothetical protein; Provisional	82.81
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	82.8
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	82.79
PRK00295	68	hypothetical protein; Provisional	82.54
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	82.53
COG4942	420	Membrane-bound metallopeptidase [Cell division and	82.51
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	82.11
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	82.02
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	81.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	81.86
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	81.56
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	81.54
PRK05431	425	seryl-tRNA synthetase; Provisional	81.51
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	81.43
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	81.39
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	81.38
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	81.36
PF07412	200	Geminin: Geminin; InterPro: IPR022786 This family	81.34
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	81.26
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	81.14
PRK13922	276	rod shape-determining protein MreC; Provisional	81.11
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	80.97
PF05837	106	CENP-H: Centromere protein H (CENP-H); InterPro: I	80.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	80.92
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	80.81
KOG4403	575	consensus Cell surface glycoprotein STIM, contains	80.67
PHA03162	135	hypothetical protein; Provisional	80.54
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	80.49
KOG1962	216	consensus B-cell receptor-associated protein and r	80.47
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	80.32
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	80.27
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	80.24
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	80.19

>PF12498 bZIP_C: Basic leucine-zipper C terminal; InterPro: IPR020983 Basic leucine-zipper (bZIP) proteins are found in eukaryotes

Probab=99.94  E-value=5.9e-28  Score=210.66  Aligned_cols=114  Identities=39%  Similarity=0.604  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHhccchhhhhccCCCCCCCCCCCCCCccCcCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCC
Q 013689          291 TLRAKVKMAEETVKRVTGLNPLLLARSDVPGVGMPLVNVPLDASRNATHPMQPNPNQFFHQAIPSISTPTPNHQSLDSSF  370 (438)
Q Consensus       291 ~Lrakl~maE~~v~Rl~~ln~~l~~~~~~~~~~~p~~~~~~~~s~~~~vp~q~~~~~~~~~~~~~~~~~~~~~~~~~n~~  370 (438)
                      +||+|||||||+|||++|+|++|+.+.++++++|||.++++|+.+++++|+|+++.|||+++.++.+++..+     |. 
T Consensus         1 TLRAKVKMAEe~VkRvTg~n~~~~~~~~~ss~~~p~~~~~s~~~~~~~~Piq~~~~~~~~~~~~~~~i~~~~-----~~-   74 (115)
T PF12498_consen    1 TLRAKVKMAEETVKRVTGMNPMFQAISQMSSMGMPFSSSPSPADSSAAVPIQDNSNNYFHQPNPNPTISVHG-----NN-   74 (115)
T ss_pred             ChhHHHHHHHHHHHHHhccCccccccccCCCCCCCCCCCcccccccccCCccCCchhhccCCCCCCCcCCCC-----cc-
Confidence            599999999999999999999999999999999999999898887899999999999999988888877422     11 


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccCCccCCC
Q 013689          371 PSNIQLPTVGNPQSDRGGKNMTETSPLQHAVGLEHVPQGVGHRVSPP  417 (438)
Q Consensus       371 ~~~~~~p~~~~~q~~~~~~~m~~~~s~q~vaslehlqkr~~~~~~~~  417 (438)
                          +.+.   .+...++.||+|+++|||||||||||||||+|+++|
T Consensus        75 ----~~~~---~~~~~~~~~~~~t~smqrvaslEhlQkri~~g~~~~  114 (115)
T PF12498_consen   75 ----DNPE---PGGAFVGGKMGRTASMQRVASLEHLQKRIRGGPTSS  114 (115)
T ss_pred             ----cccc---cccccccccccCCccCccchhHHHHHHHhcCCCCCC
Confidence                1221   122357889999999999999999999999998765

They are typically between 174 and 411 amino acids in length. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin []. This entry represents a C-terminal domain found in bZIP proteins. It is found in association with PF00170 from PFAM. There is a conserved KVK sequence motif and a single completely conserved residue K that may be functionally important.

>smart00338 BRLZ basic region leucin zipper

Probab=99.31  E-value=1.3e-11  Score=96.90  Aligned_cols=62  Identities=40%  Similarity=0.547  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN  282 (438)
Q Consensus       221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN  282 (438)
                      .++|+.||+++||+||++||.||++|+.+||.+|..|+.+|..|..++..|..++..|..+|
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36799999999999999999999999999999999999999999999987666665555544

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.27  E-value=3.7e-11  Score=116.75  Aligned_cols=82  Identities=27%  Similarity=0.374  Sum_probs=77.7

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          220 SVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  299 (438)
Q Consensus       220 ~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma  299 (438)
                      ..|+|-+||+++||.+|+.+|.|||+++++||.+|.+|+.||+.|+.+.+.|+.+.+.|.++|.+|..+++.|+..|...
T Consensus        65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~  144 (292)
T KOG4005|consen   65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL  144 (292)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999888765


Q ss_pred             HH
Q 013689          300 EE  301 (438)
Q Consensus       300 E~  301 (438)
                      .+
T Consensus       145 ~~  146 (292)
T KOG4005|consen  145 KQ  146 (292)
T ss_pred             HH
Confidence            54

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.26  E-value=3.4e-11  Score=94.34  Aligned_cols=61  Identities=39%  Similarity=0.571  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN  282 (438)
Q Consensus       222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN  282 (438)
                      +.|+.+|+++||+||+++|.||++|+++|+.+|..|+.+|..|..++..|...+..|..+|
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5789999999999999999999999999999999999999999999998888888887776

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.16  E-value=5.5e-11  Score=125.49  Aligned_cols=70  Identities=36%  Similarity=0.424  Sum_probs=67.4

Q ss_pred             CCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          217 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  286 (438)
Q Consensus       217 ~~d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr  286 (438)
                      .+|++-.||+.|||+|||||..||+|||+|+..||.+++.|..||+.|+++...|++++..++.||.+||
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k  343 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK  343 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence            4677889999999999999999999999999999999999999999999999999999999999999996

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.00  E-value=5.6e-10  Score=111.03  Aligned_cols=59  Identities=29%  Similarity=0.506  Sum_probs=54.3

Q ss_pred             CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          219 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE  277 (438)
Q Consensus       219 d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~  277 (438)
                      +..-.||.-|++||||+||.+|+|||+|++.||.+|..||.+|..|.++|..|++-|..
T Consensus       286 ee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~  344 (348)
T KOG3584|consen  286 EEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH  344 (348)
T ss_pred             hhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence            34457888899999999999999999999999999999999999999999999987764

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=98.97  E-value=3.6e-09  Score=80.79  Aligned_cols=51  Identities=39%  Similarity=0.629  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ  273 (438)
Q Consensus       222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~q  273 (438)
                      ++++.||+ +||++|++||.||++++.+|+.+|..|+.+|..|..++..|.+
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67788888 9999999999999999999999999999999999999887764

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.95  E-value=1.1e-09  Score=114.40  Aligned_cols=72  Identities=33%  Similarity=0.438  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  299 (438)
Q Consensus       221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma  299 (438)
                      ...||+||+|+|.+||+.||+|||.|++.||.+|.....||++|.++++       .|+.+|+.|-+|+..|++.+.+-
T Consensus       248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~-------~Le~~N~sLl~qL~klQt~v~q~  319 (472)
T KOG0709|consen  248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVE-------ELELSNRSLLAQLKKLQTLVIQV  319 (472)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHH-------HHhhccHHHHHHHHHHHHHHhhc
Confidence            4678999999999999999999999999999999999999999998887       67799999999999999988774

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.02  E-value=1.1e-07  Score=79.89  Aligned_cols=59  Identities=37%  Similarity=0.501  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA  279 (438)
Q Consensus       221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~  279 (438)
                      .+.|.+||.++||.+|++||.||..++++|+.++..|+.+...|..++..+...+..+.
T Consensus        27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk   85 (92)
T PF03131_consen   27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELK   85 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999999999999999999888877777777666655444433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.91  E-value=3.7e-05  Score=76.24  Aligned_cols=50  Identities=28%  Similarity=0.438  Sum_probs=42.6

Q ss_pred             hHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          221 VDDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD  270 (438)
Q Consensus       221 ~d~KR~RR-~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~  270 (438)
                      .|..|..| .++||++|.+||.||.+||..||.+|..|..+|..|...+..
T Consensus       202 qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~  252 (279)
T KOG0837|consen  202 QEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSK  252 (279)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence            34445445 799999999999999999999999999999999888777664

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.11  E-value=0.0046  Score=62.50  Aligned_cols=64  Identities=25%  Similarity=0.282  Sum_probs=48.5

Q ss_pred             HHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          222 DDKRARR-MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  292 (438)
Q Consensus       222 d~KR~RR-~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L  292 (438)
                      +.|+.|| .+.|..+|-|=|+||++..++|+.++..|+.+|.+|+.++..       ++.|=+.||+=+.+.
T Consensus       224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~-------lerEI~ylKqli~e~  288 (294)
T KOG4571|consen  224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASE-------LEREIRYLKQLILEV  288 (294)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            4555555 455566799999999999999999999999999999988884       445555565554444

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.10  E-value=0.0042  Score=56.35  Aligned_cols=65  Identities=23%  Similarity=0.357  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  300 (438)
Q Consensus       222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE  300 (438)
                      -.|..||-|+||=.|+-+|-|+-++-.+||.+...|..|.       .       .|..||..++.++..++.|++.+.
T Consensus        51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv-------~-------~L~~e~s~~~~E~da~k~k~e~l~  115 (135)
T KOG4196|consen   51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQV-------E-------KLKEENSRLRRELDAYKSKYEALQ  115 (135)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678889999999999999999887777776655444333       3       445666667777777776665443

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=96.77  E-value=0.0057  Score=60.84  Aligned_cols=46  Identities=22%  Similarity=0.377  Sum_probs=38.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD  270 (438)
Q Consensus       225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~  270 (438)
                      =..|.-+|=+++||||.+.+...+++..+|..|+.||..|+.++..
T Consensus       195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~  240 (269)
T KOG3119|consen  195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQ  240 (269)
T ss_pred             HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445557889999999999999999999999998888888777764

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.60  E-value=0.034  Score=45.68  Aligned_cols=62  Identities=21%  Similarity=0.227  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                      +-++.||.+|..+-.....|..++..|.++...+..+|..|+.+...|+.......+.++.+
T Consensus         4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen    4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999988888888888888888888888888888888888887766665554443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.40  E-value=0.0063  Score=66.63  Aligned_cols=66  Identities=26%  Similarity=0.361  Sum_probs=53.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      |=+||.=|||.+|+++|+||...|..||..|..|+.|-++|.++-.       ++...=.+++.++..|-.++
T Consensus       490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~-------~~d~~L~~~kqqls~L~~~V  555 (604)
T KOG3863|consen  490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD-------ELDSTLGVMKQQLSELYQEV  555 (604)
T ss_pred             hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            3457888999999999999999999999999999999988877654       45555667777777775543

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.07  E-value=0.065  Score=43.47  Aligned_cols=60  Identities=22%  Similarity=0.158  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL  309 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l  309 (438)
                      +..|+.+|.+|-.....|+.++..|.++...+..|++.|..+++.-|.||   |.++.|+..+
T Consensus         2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv---EamI~RLk~l   61 (65)
T TIGR02449         2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV---EAMITRLKAL   61 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhh
Confidence            45677777777777777777777777777777788888887777777765   4456666544

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.75  E-value=0.081  Score=49.70  Aligned_cols=57  Identities=14%  Similarity=0.205  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689          253 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL  309 (438)
Q Consensus       253 qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l  309 (438)
                      ....|+.||..|..++..|++++..|..||..|..++..+....+++-.+++|...+
T Consensus        98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl  154 (161)
T TIGR02894        98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL  154 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577888999999999999999999999999999999999999999988888887654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=95.70  E-value=0.12  Score=49.87  Aligned_cols=47  Identities=13%  Similarity=0.151  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689          261 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  307 (438)
Q Consensus       261 N~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~  307 (438)
                      ...|..++....+....|..+|+.|+.+++.++.++..++...+++.
T Consensus       120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884        120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555556666666666666666666666555555443

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=95.49  E-value=0.087  Score=46.23  Aligned_cols=53  Identities=26%  Similarity=0.370  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  301 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~  301 (438)
                      +|=.++..|+.....|..++..|+.+...+..||..|+.+.+.||.+|...+.
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45556666666667777777777777778888888888888888888776654

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=95.41  E-value=0.038  Score=41.63  Aligned_cols=42  Identities=24%  Similarity=0.444  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          256 QLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK  297 (438)
Q Consensus       256 ~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~  297 (438)
                      +|+.+...|+.....|...|..|..||..|++++..|..++.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            577788888888888888888888889999988888877764

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=95.35  E-value=0.17  Score=41.80  Aligned_cols=61  Identities=23%  Similarity=0.312  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYD--------ESAVNNRILKADIETLRAKVKMAEETVKRVT  307 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~--------~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~  307 (438)
                      |.+.+.+++.|+.||=.|+-++-.|.+++.        .+..+|-.|+.+++.|+..|+.....+....
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~   70 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE   70 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999998777        4578999999999999999988877766543

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=94.95  E-value=0.21  Score=40.60  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  301 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~  301 (438)
                      +.++.|-....+|+.||..|+.++..+......|...|..=+.+|+.|=.+|+.+|.
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq   63 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            467888888888999999999999999888888888888888999888888887764

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=94.78  E-value=0.19  Score=44.53  Aligned_cols=51  Identities=22%  Similarity=0.292  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  299 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma  299 (438)
                      +|=.++..|+.....|..++..|++....+..||..|+.+...||.+|...
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455566666666677777777777777788888888888888888777654

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.74  E-value=0.48  Score=38.97  Aligned_cols=57  Identities=12%  Similarity=0.194  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      .+..+-..+..|+.|+..|+.+...+.+....|..+|..|+.+-.....+|..+-.-
T Consensus        12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen   12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345556667777777777777777777888888889999988888888887765433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=94.58  E-value=0.35  Score=39.42  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      +.+++-|..+++..+.+|..|..+-.....++..+-.+|..|+++++.|+.++..
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~   65 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE   65 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888888888888888888888888888888999999999998887654

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.50  E-value=0.28  Score=40.79  Aligned_cols=53  Identities=13%  Similarity=0.282  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      -+.=|.-+|..|+.+|..|..+...+++....|..+|..||.+-...+.++..
T Consensus        19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs   71 (79)
T COG3074          19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778889999999999999999999999999999999988887666543

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=94.42  E-value=0.093  Score=56.43  Aligned_cols=49  Identities=18%  Similarity=0.259  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR  293 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr  293 (438)
                      ..+++||.|++.|+.|.+.|.++...+++++..++.||+.|+++++.+.
T Consensus        76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~  124 (475)
T PRK13729         76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG  124 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4678999999999999999999999999999999999999999986553

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=94.35  E-value=0.22  Score=43.78  Aligned_cols=50  Identities=30%  Similarity=0.414  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  294 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra  294 (438)
                      ..+.+||.++..|-.+...|+.++..|.+....|..||..||..+..+..
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56889999999999999999999999999999999999999999999876

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.28  E-value=0.84  Score=50.12  Aligned_cols=83  Identities=18%  Similarity=0.288  Sum_probs=65.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  303 (438)
Q Consensus       224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v  303 (438)
                      |....+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|+.+..+++.++..+++.+
T Consensus       150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi  229 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI  229 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666667777777777788888888888888888888888888888888888888888888888888888887766


Q ss_pred             HHH
Q 013689          304 KRV  306 (438)
Q Consensus       304 ~Rl  306 (438)
                      +.+
T Consensus       230 ~~l  232 (546)
T PF07888_consen  230 KTL  232 (546)
T ss_pred             HHH
Confidence            654

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.25  E-value=0.34  Score=45.67  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=34.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET  291 (438)
Q Consensus       223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~  291 (438)
                      .++++.+...+..-+.-.......+.++..-+..|..|...|.-++..+.+++..|..||+.|-.....
T Consensus       115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444455555555555555555555555555555555555555555444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=94.00  E-value=0.28  Score=43.48  Aligned_cols=50  Identities=28%  Similarity=0.383  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  294 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra  294 (438)
                      ..+..||.++..|-.+...|+..+..+.++...|..||..||..+.++..
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46789999999999999999999999999999999999999999999844

>PRK11637 AmiB activator; Provisional

Probab=93.72  E-value=1.4  Score=46.11  Aligned_cols=57  Identities=18%  Similarity=0.149  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          240 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       240 R~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      ...-...++.|+.++..++.+...+..++..++++...+..+=..|+.++..++..+
T Consensus        70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555555555555555555555555555555544444444444444333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.70  E-value=1.2  Score=43.20  Aligned_cols=53  Identities=6%  Similarity=0.052  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK  297 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~  297 (438)
                      ++..+|+.+++.+..+...|..++..|++++..+..+++.|++++..++..+.
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444454455555555666666666666655443

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=93.62  E-value=0.35  Score=43.05  Aligned_cols=50  Identities=24%  Similarity=0.300  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      ++=.+|..|+.....|.+++..+.+++..+..||..|+-+.+.||.+|..
T Consensus         5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            34456777777778888888888888999999999999999999988866

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.61  E-value=1.1  Score=40.40  Aligned_cols=62  Identities=18%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  286 (438)
Q Consensus       225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr  286 (438)
                      +..|=...||..-....++...++.|+..+..|+.++..+..++..+..+...+..+++.+.
T Consensus        46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~  107 (151)
T PF11559_consen   46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE  107 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555555555544444444444444333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=93.41  E-value=1.2  Score=36.61  Aligned_cols=61  Identities=16%  Similarity=0.352  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  307 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~  307 (438)
                      +..||.-=+..+..-......+..++..+.....+|..|++++..|..+|..+.+.+.|+.
T Consensus         9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs   69 (70)
T PF04899_consen    9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS   69 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344444445556666777788888888888899999999999999999999999998875

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.34  E-value=3  Score=37.56  Aligned_cols=82  Identities=18%  Similarity=0.355  Sum_probs=42.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          226 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR  305 (438)
Q Consensus       226 ~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R  305 (438)
                      +-.++.-|..-...|.-=...+..|+.....|+..+..|..+++.+.+++..+..+-+.|+.++..+...++...+.+.+
T Consensus        40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k  119 (151)
T PF11559_consen   40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK  119 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555544433333333333344444444444444445555555555555555555556666666666666666666666


Q ss_pred             Hh
Q 013689          306 VT  307 (438)
Q Consensus       306 l~  307 (438)
                      +.
T Consensus       120 lk  121 (151)
T PF11559_consen  120 LK  121 (151)
T ss_pred             HH
Confidence            54

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.95  E-value=2.1  Score=40.35  Aligned_cols=68  Identities=25%  Similarity=0.412  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL  312 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~  312 (438)
                      ..+...+.++..|+.++..|..++..+...+.+....|..|+.++..|+-.+.++|+...++...|.-
T Consensus       109 ~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~  176 (194)
T PF08614_consen  109 KELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE  176 (194)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556666666666666666666666666777777777777777777777777666666665543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.54  E-value=1.6  Score=36.81  Aligned_cols=38  Identities=13%  Similarity=0.158  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI  284 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~  284 (438)
                      ++.||.+|.+.-....-|.-+++.|.++...|..++..
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555554444444444444444444444444333

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.46  E-value=0.95  Score=38.21  Aligned_cols=53  Identities=15%  Similarity=0.283  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      -+.=|.-+|+.|+.+|..|..++..+......|..+|..||.+-.....+|..
T Consensus        19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422         19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778888888888888888888888888999999999888887666543

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.97  E-value=4.9  Score=38.62  Aligned_cols=84  Identities=25%  Similarity=0.383  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Q 013689          222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA---------------VNNRILK  286 (438)
Q Consensus       222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~---------------~EN~~Lr  286 (438)
                      +....++.+.+-+.-+.+-..-+.++..++.++..|+-|+..|..++..+.+....|.               ..|-.|.
T Consensus        70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLE  149 (201)
T PF13851_consen   70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLE  149 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888888888888887888888888888888888888888887777666553               3455555


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013689          287 ADIETLRAKVKMAEETVKR  305 (438)
Q Consensus       287 aqve~Lrakl~maE~~v~R  305 (438)
                      .++..|...|...+..+..
T Consensus       150 kKl~~l~~~lE~keaqL~e  168 (201)
T PF13851_consen  150 KKLQALSEQLEKKEAQLNE  168 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666665555555544433

>PRK11637 AmiB activator; Provisional

Probab=91.95  E-value=2.5  Score=44.23  Aligned_cols=74  Identities=16%  Similarity=0.162  Sum_probs=47.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          231 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK  304 (438)
Q Consensus       231 sNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~  304 (438)
                      +............+..+.+++.++..|+.+...+..++..+++++..+..+=..|..++..++.++...++.++
T Consensus        54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~  127 (428)
T PRK11637         54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444455666667777777777777777777777777777777777777777777777766655443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.46  E-value=1.9  Score=39.46  Aligned_cols=19  Identities=21%  Similarity=0.513  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013689          287 ADIETLRAKVKMAEETVKR  305 (438)
Q Consensus       287 aqve~Lrakl~maE~~v~R  305 (438)
                      ..++.|.+++.++|+.+.+
T Consensus        73 ~~~E~l~rriq~LEeele~   91 (143)
T PF12718_consen   73 SNAEQLNRRIQLLEEELEE   91 (143)
T ss_pred             HhHHHHHhhHHHHHHHHHH
Confidence            3344555555555544444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=91.00  E-value=6.1  Score=39.41  Aligned_cols=52  Identities=19%  Similarity=0.297  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQK  274 (438)
Q Consensus       223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk  274 (438)
                      .+-.+++..-.+.+++.-.-++..+++|+.+|.+++.+.+.++.++..++.+
T Consensus        30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k   81 (239)
T COG1579          30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK   81 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566666667777777777777888888887777777777777666543

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=90.85  E-value=1.8  Score=39.82  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDV  271 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l  271 (438)
                      .+|..++..|+.++..|..++..|
T Consensus        82 ~~L~~el~~l~~~~k~l~~eL~~L  105 (169)
T PF07106_consen   82 KELREELAELKKEVKSLEAELASL  105 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444433

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.75  E-value=2.6  Score=42.14  Aligned_cols=54  Identities=22%  Similarity=0.278  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  300 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE  300 (438)
                      ++++..+...|..++..|..+++.++.++..+..||..|......|--++..++
T Consensus       144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~  197 (290)
T COG4026         144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK  197 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence            444444444555555555555555555555666666666554444443443333

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.72  E-value=1.5  Score=47.46  Aligned_cols=61  Identities=20%  Similarity=0.348  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESA-VNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~-~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                      ++..|+.+-+.|+.||+.|+++...+.++..... .+..+|..+.+.|..++..++..+..|
T Consensus        74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752        74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888888888888888888888777776544 677788878777777766665555444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=90.61  E-value=5.6  Score=38.18  Aligned_cols=59  Identities=19%  Similarity=0.139  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV  280 (438)
Q Consensus       222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~  280 (438)
                      +.+-.+..|....+-+..+.+.+.+.+.|+.++..-+.++..+..++..+.++...+..
T Consensus        87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~  145 (190)
T PF05266_consen   87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQR  145 (190)
T ss_pred             ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            45667777777888888888888888888888876644444444444444444444433

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=90.29  E-value=7.6  Score=33.04  Aligned_cols=71  Identities=20%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  292 (438)
Q Consensus       222 d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L  292 (438)
                      -.+|+.+.+.+=|++=..|.-+.....+|+.+++.|....+.|..+|.....++..|+.-|+++...+...
T Consensus         9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a   79 (89)
T PF13747_consen    9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA   79 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888999999888888888888999999999999999999999999988888888888877666554

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=90.26  E-value=3.9  Score=41.17  Aligned_cols=53  Identities=17%  Similarity=0.234  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      .+.||+.+-..|+.||..|+.+...|--+.+++..+=..|++++.+|.....+
T Consensus        98 ~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~  150 (292)
T KOG4005|consen   98 EIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQH  150 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Confidence            36778888888888888888888888888888888877888888887766655

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=90.09  E-value=5.5  Score=33.82  Aligned_cols=77  Identities=21%  Similarity=0.334  Sum_probs=37.7

Q ss_pred             HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q 013689          229 MLSNRESARRSRRRKQ------AHLNELETQAGQLRAEHSSLLKGLTDVNQKYD----------ESAVNNRILKADIETL  292 (438)
Q Consensus       229 ~lsNRESARRSR~RKq------~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~----------~L~~EN~~Lraqve~L  292 (438)
                      +..|.+.-+.+-.+|.      ..+-+|..+...|..+-..|+.+...+..++.          .+..+=..|+.++..|
T Consensus         7 ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~l   86 (108)
T PF02403_consen    7 IRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKEL   86 (108)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHH
Confidence            3346666665555553      33344444444444444444444444444443          4444455555555555


Q ss_pred             HHHHHHHHHHHHH
Q 013689          293 RAKVKMAEETVKR  305 (438)
Q Consensus       293 rakl~maE~~v~R  305 (438)
                      ..++..+++.+..
T Consensus        87 e~~~~~~e~~l~~   99 (108)
T PF02403_consen   87 EEQLKELEEELNE   99 (108)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555544433

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=90.03  E-value=5.2  Score=45.27  Aligned_cols=39  Identities=18%  Similarity=0.196  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA  287 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra  287 (438)
                      -+..+..+|+.|...|+.++....+++..++.|.+.|+.
T Consensus       542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666777777777777777777776666666655543

; GO: 0016021 integral to membrane

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=89.90  E-value=4.9  Score=35.75  Aligned_cols=57  Identities=18%  Similarity=0.246  Sum_probs=39.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV  280 (438)
Q Consensus       224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~  280 (438)
                      -+.+-+..-.|..+-|+..=.+.-++|+..+..|+.++..+.+++.+|+.++..+..
T Consensus        16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~   72 (107)
T PF09304_consen   16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR   72 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566667777777777666666777777777777777777777777766665544

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.80  E-value=2.8  Score=42.36  Aligned_cols=63  Identities=22%  Similarity=0.324  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          240 RRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       240 R~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      -..+...+.+++..+..++.+...|..++..+..+...+..++..+++++..|..++...++.
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~   95 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN   95 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788888888889999999999999999888888888888888888888888877643

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=89.73  E-value=2.3  Score=35.90  Aligned_cols=46  Identities=20%  Similarity=0.245  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  292 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L  292 (438)
                      -++|..++..|+..-..|..++..++..+..|..||..|..=|..|
T Consensus        18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL   63 (80)
T PF10224_consen   18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL   63 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667778888888888889999988888889999999988888877

The exact function is unknown.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=89.61  E-value=2.7  Score=46.80  Aligned_cols=84  Identities=20%  Similarity=0.322  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh-ccchhhhhc-c
Q 013689          243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL---KADIETLRAKVKMAEETVKRVT-GLNPLLLAR-S  317 (438)
Q Consensus       243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L---raqve~Lrakl~maE~~v~Rl~-~ln~~l~~~-~  317 (438)
                      =+.+..+|+.++.+|+.++..|..++..+......-.-.++.+   ..++..|+.+|......++.|. .++.+.... .
T Consensus       434 l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~l  513 (652)
T COG2433         434 LEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKL  513 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456677777777777777778777777777665444444443   3567777777777666666654 334433222 2


Q ss_pred             CCCCCCCCC
Q 013689          318 DVPGVGMPL  326 (438)
Q Consensus       318 ~~~~~~~p~  326 (438)
                      +.+|-++|+
T Consensus       514 E~sG~g~pv  522 (652)
T COG2433         514 ELSGKGTPV  522 (652)
T ss_pred             hhcCCCcce
Confidence            455666666

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.53  E-value=10  Score=36.58  Aligned_cols=12  Identities=8%  Similarity=0.421  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHH
Q 013689          286 KADIETLRAKVK  297 (438)
Q Consensus       286 raqve~Lrakl~  297 (438)
                      +..+..++.++.
T Consensus       125 ~~~~~~~~~~l~  136 (302)
T PF10186_consen  125 QNELEERKQRLS  136 (302)
T ss_pred             HHHHHHHHHHHH
Confidence            333344444433

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=89.47  E-value=2.7  Score=42.04  Aligned_cols=64  Identities=22%  Similarity=0.322  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                      =+..++++..++..+..|+..|..+++.++.+|.++...=..|+.+...|..+++.+...+-+|
T Consensus       133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L  196 (290)
T COG4026         133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL  196 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence            3456677888888888888888888887777777766666666666655555555555444333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=89.43  E-value=1.9  Score=45.14  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          239 SRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  292 (438)
Q Consensus       239 SR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L  292 (438)
                      -=+|-+.+...||.-+.+++.||+.|..+++.+.+.+.+.+.|+..|..++.+-
T Consensus       121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~  174 (401)
T PF06785_consen  121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA  174 (401)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            446777888889999999999999999999999999999999988886555443

>PRK09039 hypothetical protein; Validated

Probab=89.43  E-value=4.5  Score=41.81  Aligned_cols=60  Identities=20%  Similarity=0.253  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET-VKRVT  307 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~-v~Rl~  307 (438)
                      .+...+|..|+.+...|+.++..++..+..++.+.+..+.+++.|.++|..+-.. ++.|.
T Consensus       133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~  193 (343)
T PRK09039        133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELN  193 (343)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344456677777777777777777777788888888888888888887776433 44443

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.32  E-value=8.9  Score=37.46  Aligned_cols=42  Identities=14%  Similarity=0.117  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRI  284 (438)
Q Consensus       243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~  284 (438)
                      -++.+..|+.+++.|+.+|..|...+...+++...|..+-..
T Consensus        54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~   95 (251)
T PF11932_consen   54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ   95 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555444444444444443333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=89.08  E-value=3.1  Score=42.85  Aligned_cols=60  Identities=20%  Similarity=0.223  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  307 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~  307 (438)
                      -+|+.+++++..||..|...|...+.....|..|...|+.+..+...-+..+++.++.+.
T Consensus       244 vdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR  303 (306)
T PF04849_consen  244 VDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR  303 (306)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344444444444555555555544444444555555555555554444555555555543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=89.02  E-value=1.7  Score=32.86  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  301 (438)
Q Consensus       263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~  301 (438)
                      +|......|...|..|..+|..|+.+.+.|+++|..+..
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~   40 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE   40 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788899999999999999999999999988866543

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family

Probab=88.77  E-value=6.1  Score=36.30  Aligned_cols=73  Identities=18%  Similarity=0.131  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhccC
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLARSD  318 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~~~~  318 (438)
                      .++.....+......+..+..+|..+......-..+-..|+.+.....+.+...|..+.||...|.-|....+
T Consensus        27 ~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~   99 (135)
T TIGR03495        27 DLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWAD   99 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhc
Confidence            3444555567777778888888888888777778888899999999999999999999999999988877753

Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=88.76  E-value=2.4  Score=38.91  Aligned_cols=50  Identities=26%  Similarity=0.348  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          244 QAHLNELETQAGQLRAEHSSLLKGL--TDVNQKYDESAVNNRILKADIETLR  293 (438)
Q Consensus       244 q~~leeLE~qV~~Le~EN~~L~~el--~~l~qk~~~L~~EN~~Lraqve~Lr  293 (438)
                      ++.+.+|+.++..|+.|...|...+  ..|......|..|+..|..+++.|+
T Consensus        85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667777777777777776665  3344455555555555555555554

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=88.71  E-value=35  Score=37.99  Aligned_cols=24  Identities=17%  Similarity=0.212  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          276 DESAVNNRILKADIETLRAKVKMA  299 (438)
Q Consensus       276 ~~L~~EN~~Lraqve~Lrakl~ma  299 (438)
                      ..+..||..|+..|..|+.++.++
T Consensus       434 Eql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  434 EQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345556666666666666666554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=88.61  E-value=5.3  Score=35.87  Aligned_cols=15  Identities=27%  Similarity=0.465  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 013689          279 AVNNRILKADIETLR  293 (438)
Q Consensus       279 ~~EN~~Lraqve~Lr  293 (438)
                      ..++.+|++++..|+
T Consensus        95 ~E~veEL~~Dv~DlK  109 (120)
T PF12325_consen   95 SEEVEELRADVQDLK  109 (120)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            445555565555554

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=88.36  E-value=0.78  Score=43.36  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      |+|+|.+.++--.+|.-|..+|.    +-..|..++++||.++..|+..+
T Consensus         2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl   47 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL   47 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999984    45678899999999999998888

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=88.31  E-value=3.5  Score=33.70  Aligned_cols=48  Identities=19%  Similarity=0.265  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          258 RAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR  305 (438)
Q Consensus       258 e~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R  305 (438)
                      +.++..|+.++..+.+++.....+|..|+.+-.....+|.++-..+..
T Consensus         4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~   51 (69)
T PF14197_consen    4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNK   51 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=88.05  E-value=8.4  Score=43.09  Aligned_cols=56  Identities=21%  Similarity=0.353  Sum_probs=38.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          230 LSNRESARRSRRRKQAHLNELETQAGQLR------------------------AEHSSLLKGLTDVNQKYDESAVNNRIL  285 (438)
Q Consensus       230 lsNRESARRSR~RKq~~leeLE~qV~~Le------------------------~EN~~L~~el~~l~qk~~~L~~EN~~L  285 (438)
                      +.|.+.--+--..+..+|.+||.++..++                        ..|..|+.+|..++..|..|.++|..|
T Consensus       107 v~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el  186 (617)
T PF15070_consen  107 VENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL  186 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence            33444333333366777777777666544                        357788999999999999999998433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=87.94  E-value=3.4  Score=40.08  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  299 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma  299 (438)
                      ||-..|+.|+.-|..|..+...|......++..|..|..++..|+.++++.
T Consensus         5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~   55 (193)
T PF14662_consen    5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL   55 (193)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444455555555555544444443

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=87.84  E-value=1.3  Score=34.60  Aligned_cols=50  Identities=26%  Similarity=0.349  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          242 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  294 (438)
Q Consensus       242 RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra  294 (438)
                      |++..|+||+.++..-+ |..  ...-....+.+..|..||+.|++++.-++.
T Consensus         1 kw~~Rl~ELe~klkaer-E~R--~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~   50 (52)
T PF12808_consen    1 KWLLRLEELERKLKAER-EAR--SLDRSAARKRLSKLEGENRLLRAELERLRS   50 (52)
T ss_pred             CHHHHHHHHHHHHHHhH-Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46677888887766433 211  112234556667888999999999887753

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=87.81  E-value=2.8  Score=33.82  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  286 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr  286 (438)
                      +++.+||.++..++.-...|...+..-+++...|..+-+.|+
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~   45 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR   45 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777777777777776666655444444433333333

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=87.78  E-value=5.6  Score=34.58  Aligned_cols=61  Identities=13%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          243 KQAHLNELETQAGQLRAEHSSLLKGLTDV--NQKYDESAVNNRILKADIETLRAKVKMAEETV  303 (438)
Q Consensus       243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l--~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v  303 (438)
                      |+..++.|+.++......-..|..++..+  .+.++.|..+=..++-++.+|+++++-....+
T Consensus        33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~   95 (106)
T PF10805_consen   33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL   95 (106)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            34555566555555544444444444444  44444555555555555555555554444333

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=87.36  E-value=3.4  Score=41.98  Aligned_cols=10  Identities=20%  Similarity=0.322  Sum_probs=7.5

Q ss_pred             CCCCCCCCCC
Q 013689          318 DVPGVGMPLV  327 (438)
Q Consensus       318 ~~~~~~~p~~  327 (438)
                      +.|-..+|++
T Consensus       188 E~pR~~~Pss  197 (333)
T KOG1853|consen  188 ERPRIVEPSS  197 (333)
T ss_pred             cCCCcCCccc
Confidence            5677788876

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=87.18  E-value=2.3  Score=37.01  Aligned_cols=44  Identities=18%  Similarity=0.171  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          261 HSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK  304 (438)
Q Consensus       261 N~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~  304 (438)
                      ...|.+++..+++++..+..+|..|+.++..|+..-...|+.+.
T Consensus        29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR   72 (105)
T PRK00888         29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR   72 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence            34445555555555556667777777777777664445555543

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.14  E-value=16  Score=37.49  Aligned_cols=68  Identities=21%  Similarity=0.347  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689          243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQ-------KYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN  310 (438)
Q Consensus       243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~q-------k~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln  310 (438)
                      ..+.|++||.+...|..|...|..+...+.+       .++.+..+-..+..+...|..++..+.+.+++|...|
T Consensus        62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN  136 (314)
T PF04111_consen   62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN  136 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3344444444444444444444444444433       3333333333444555556666666666666766655

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK04406 hypothetical protein; Provisional

Probab=87.06  E-value=5.3  Score=33.07  Aligned_cols=46  Identities=9%  Similarity=0.180  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  294 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra  294 (438)
                      .|+.++..|+....-+..-++.|++-...-..+-..|+.++..|..
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~   53 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG   53 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555554444444444443333333333444544444433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=87.05  E-value=12  Score=40.17  Aligned_cols=72  Identities=19%  Similarity=0.232  Sum_probs=46.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  295 (438)
Q Consensus       224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak  295 (438)
                      |+++-+.++=+.-.++....++....|+.+++.|+.++..+..++.........+..++..+...+..|+.+
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q  109 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ  109 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            556666666666666666677777888888888888888887777755555555555555554444444433

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=86.93  E-value=23  Score=32.76  Aligned_cols=42  Identities=21%  Similarity=0.219  Sum_probs=19.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          228 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLT  269 (438)
Q Consensus       228 R~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~  269 (438)
                      ....|++.+-+=-.-+++.+..|+.++..+..+...|..+|.
T Consensus        35 ~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~   76 (140)
T PF10473_consen   35 MSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELD   76 (140)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444445555555555544444444444444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=86.76  E-value=19  Score=30.75  Aligned_cols=68  Identities=15%  Similarity=0.077  Sum_probs=58.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          226 ARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR  293 (438)
Q Consensus       226 ~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr  293 (438)
                      +.++...++..+..=..|...+..||.++..|..|-..-.+++-.+.+....+..||+.|+.++..=+
T Consensus         5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~   72 (96)
T PF08647_consen    5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS   72 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence            45677777888888889999999999999999999999999999999999999999999987776533

>TIGR00219 mreC rod shape-determining protein MreC

Probab=86.71  E-value=2.4  Score=42.61  Aligned_cols=44  Identities=23%  Similarity=0.217  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          253 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  299 (438)
Q Consensus       253 qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma  299 (438)
                      .+.+|+.||.+|++++..+++++..   ....|++|.+.||+.|.+.
T Consensus        67 ~~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~  110 (283)
T TIGR00219        67 DVNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSP  110 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCc
Confidence            4566778888888887766444333   1222444444455444443

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PRK02119 hypothetical protein; Provisional

Probab=86.61  E-value=5.5  Score=32.74  Aligned_cols=44  Identities=16%  Similarity=0.158  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  295 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak  295 (438)
                      +++.+||.++..++.-...|...+.       .-..+-..|+.++..|..+
T Consensus         9 ~Ri~~LE~rla~QE~tie~LN~~v~-------~Qq~~id~L~~ql~~L~~r   52 (73)
T PRK02119          9 NRIAELEMKIAFQENLLEELNQALI-------EQQFVIDKMQVQLRYMANK   52 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            3455555555555444444444433       3333334444444444333

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=86.57  E-value=6.1  Score=37.66  Aligned_cols=62  Identities=18%  Similarity=0.217  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR  305 (438)
Q Consensus       244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R  305 (438)
                      ..+|++=..+...|..-|.-|+.+++........|..++..|+.+...|+.+|...|.....
T Consensus        66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~  127 (182)
T PF15035_consen   66 LIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE  127 (182)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667778888889999999999999888899999999999999988888887755543

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=86.55  E-value=5  Score=39.58  Aligned_cols=59  Identities=22%  Similarity=0.267  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Q 013689          250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLLA  315 (438)
Q Consensus       250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~  315 (438)
                      |+++...+..+-..|..+++....++..+..++..|+.|.+.+       .+..+|+.--|+-||.
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~-------~~EydrLlee~~~Lq~  207 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL-------QDEYDRLLEEYSKLQE  207 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------ccHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444       4455666555555553

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=86.44  E-value=5.8  Score=37.56  Aligned_cols=42  Identities=17%  Similarity=0.300  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  292 (438)
Q Consensus       251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L  292 (438)
                      +.+...|+.|+..|..++..|..++..|..+...++.+.++|
T Consensus       103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L  144 (161)
T TIGR02894       103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL  144 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444444444444444444444444

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.22  E-value=10  Score=31.80  Aligned_cols=53  Identities=13%  Similarity=0.140  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK  297 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~  297 (438)
                      +-++.||.+|++.-.-..-|.-+++.|.++.+.|..|-..++...++|+++-.
T Consensus         4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ene   56 (79)
T COG3074           4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENE   56 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence            34677888887766666666666666666555555555555555555554433

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=86.20  E-value=2.9  Score=37.35  Aligned_cols=51  Identities=24%  Similarity=0.313  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIET--LRAK  295 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~--Lrak  295 (438)
                      ..+.+||.++..|-.+...|++.+..+-+....|..||..||..+..  +...
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~   60 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKT   60 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccch
Confidence            46789999999999999999999999999999999999999999988  5443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=86.19  E-value=11  Score=36.75  Aligned_cols=47  Identities=17%  Similarity=0.271  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  294 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra  294 (438)
                      .-|..++..|+.||..|..+...++.++..|..+|..|+-++-....
T Consensus        98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~  144 (193)
T PF14662_consen   98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES  144 (193)
T ss_pred             HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45777788888888888888888888888888888888777744433

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=86.16  E-value=11  Score=30.98  Aligned_cols=59  Identities=22%  Similarity=0.263  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                      .+=..++.+|..|-..|..+.-.+......|...|..+..++..|..++..++..+..+
T Consensus         8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l   66 (74)
T PF12329_consen    8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL   66 (74)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566666666666666666666666666666666666666666665555554444

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=86.05  E-value=6.4  Score=40.12  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  303 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v  303 (438)
                      ..|..|..++..+..+...++.++..++.+...+..+-..+.++..+|...+..++...
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~  267 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR  267 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666655443

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=85.89  E-value=11  Score=31.08  Aligned_cols=64  Identities=22%  Similarity=0.316  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          242 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR  305 (438)
Q Consensus       242 RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R  305 (438)
                      -|-+.+..|..+-..|....-.+...+..|+.+...++.+...|+.+++.+..++..+++..++
T Consensus         9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~   72 (74)
T PF12329_consen    9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR   72 (74)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3567888888888888888888888888888888888888888888888888888777765543

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.85  E-value=14  Score=39.43  Aligned_cols=39  Identities=15%  Similarity=0.220  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  286 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr  286 (438)
                      ..|+.++..|+.++..+..++..+..++..+..+-..+.
T Consensus       361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~  399 (562)
T PHA02562        361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV  399 (562)
T ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444443

>PRK09039 hypothetical protein; Validated

Probab=85.59  E-value=5.9  Score=40.92  Aligned_cols=22  Identities=18%  Similarity=0.151  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 013689          270 DVNQKYDESAVNNRILKADIET  291 (438)
Q Consensus       270 ~l~qk~~~L~~EN~~Lraqve~  291 (438)
                      .|+++...|..+...|.+.+..
T Consensus       141 ~L~~qI~aLr~Qla~le~~L~~  162 (343)
T PRK09039        141 LLNQQIAALRRQLAALEAALDA  162 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=85.35  E-value=13  Score=39.23  Aligned_cols=80  Identities=19%  Similarity=0.320  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Q 013689          223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ--------------KYDESAVNNRILKAD  288 (438)
Q Consensus       223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~q--------------k~~~L~~EN~~Lraq  288 (438)
                      .-|+|++.-|-|--|.-|.    -+++-+.+.++|+..|++|..+|..++.              -...+..||..|+.+
T Consensus        74 q~kirk~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq  149 (401)
T PF06785_consen   74 QTKIRKITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ  149 (401)
T ss_pred             HHHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            3466777777777666553    3444555667788888888777765443              344667899999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 013689          289 IETLRAKVKMAEETVKRV  306 (438)
Q Consensus       289 ve~Lrakl~maE~~v~Rl  306 (438)
                      +.+|.+.+...|+....|
T Consensus       150 L~~l~~e~~Ekeeesq~L  167 (401)
T PF06785_consen  150 LDALQQECGEKEEESQTL  167 (401)
T ss_pred             HHHHHHHHhHhHHHHHHH
Confidence            999988886665554433

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=85.24  E-value=27  Score=31.18  Aligned_cols=62  Identities=21%  Similarity=0.227  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          238 RSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  299 (438)
Q Consensus       238 RSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma  299 (438)
                      -||.-.+..+..|+..++.++..+..|.++-..|......|..+|..+...+.+|+++|..+
T Consensus         9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea   70 (107)
T PF09304_consen    9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA   70 (107)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555444

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PRK04325 hypothetical protein; Provisional

Probab=85.05  E-value=6.2  Score=32.47  Aligned_cols=24  Identities=21%  Similarity=0.144  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLT  269 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~  269 (438)
                      ++.+||.++..++.-...|...+.
T Consensus        10 Ri~~LE~klAfQE~tIe~LN~vv~   33 (74)
T PRK04325         10 RITELEIQLAFQEDLIDGLNATVA   33 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366666666666655555555444

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=84.93  E-value=8.6  Score=32.98  Aligned_cols=42  Identities=17%  Similarity=0.228  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 013689          256 QLRAEHSSLLKGLTDVNQK------YDESAVNNRILKADIETLRAKVK  297 (438)
Q Consensus       256 ~Le~EN~~L~~el~~l~qk------~~~L~~EN~~Lraqve~Lrakl~  297 (438)
                      .+..+|..|..++..|+.+      ......||-.|+.++..|+....
T Consensus        21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~   68 (86)
T PF12711_consen   21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYV   68 (86)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666654      44678899999999999987654

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=84.76  E-value=5.5  Score=39.90  Aligned_cols=58  Identities=10%  Similarity=0.159  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      +|.+-.+.....++.....=+.+...+.++...|+.||..||.++++|+..+.-+.+.
T Consensus       194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~  251 (269)
T KOG3119|consen  194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRL  251 (269)
T ss_pred             HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445544444455556677777788888888888888888777665544

>PRK00846 hypothetical protein; Provisional

Probab=84.68  E-value=7.4  Score=32.68  Aligned_cols=50  Identities=16%  Similarity=0.145  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      +|+.++..|+....-...-++.|++.......+-..|+.++..|..||+.
T Consensus        10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~   59 (77)
T PRK00846         10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK   59 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444555555555555444433

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=84.59  E-value=17  Score=38.63  Aligned_cols=57  Identities=21%  Similarity=0.291  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDE----------SAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~----------L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      .+-+|..+..+|..+-..|+.+...+.+++..          +..+-+.|+.++.+|..+++.+++.
T Consensus        29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~   95 (425)
T PRK05431         29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE   95 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555555555555444444433          3334444455555555444444443

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=84.46  E-value=24  Score=33.87  Aligned_cols=58  Identities=22%  Similarity=0.306  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                      +|+.++..|+...-.|+.+...+..+......|...|+..+..|...+..+|-.+..+
T Consensus       128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~  185 (190)
T PF05266_consen  128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV  185 (190)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555556666777777777777777777766555444

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=84.36  E-value=10  Score=35.00  Aligned_cols=45  Identities=24%  Similarity=0.369  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLR  293 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lr  293 (438)
                      +++.++..++.....+...+....+++..+......+..++..|+
T Consensus       106 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen  106 ELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=84.33  E-value=6  Score=40.59  Aligned_cols=63  Identities=27%  Similarity=0.428  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  308 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~  308 (438)
                      .++..+.++...+.+-..|..++..++.+|.....+...|..++.....+|..++..+..|.+
T Consensus       229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~  291 (344)
T PF12777_consen  229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG  291 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence            455666667777777777888888888888888889999999999999999988877766544

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=84.31  E-value=7.8  Score=34.82  Aligned_cols=7  Identities=71%  Similarity=0.881  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 013689          290 ETLRAKV  296 (438)
Q Consensus       290 e~Lrakl  296 (438)
                      ++|+..|
T Consensus        99 eEL~~Dv  105 (120)
T PF12325_consen   99 EELRADV  105 (120)
T ss_pred             HHHHHHH
Confidence            3333333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK02793 phi X174 lysis protein; Provisional

Probab=84.06  E-value=7.5  Score=31.85  Aligned_cols=25  Identities=28%  Similarity=0.218  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLT  269 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~  269 (438)
                      +++.+||.++..++.-...|...+.
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~   32 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVT   32 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666665555555544444

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=84.01  E-value=0.054  Score=56.60  Aligned_cols=51  Identities=25%  Similarity=0.283  Sum_probs=44.2

Q ss_pred             CchHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 013689          219 DSVDDKRARRMLSNRESARR---SRRRKQAHLNELETQAGQLR-AEHSSLLKGLT  269 (438)
Q Consensus       219 d~~d~KR~RR~lsNRESARR---SR~RKq~~leeLE~qV~~Le-~EN~~L~~el~  269 (438)
                      ...+.|+..|+++|+.+|.+   +|.||+.+...|+.+|+.|+ .++..|..++.
T Consensus       149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is  203 (395)
T KOG1414|consen  149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQIS  203 (395)
T ss_pred             CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccc
Confidence            45689999999999999999   99999999999999999999 77766555444

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=83.74  E-value=12  Score=40.40  Aligned_cols=58  Identities=17%  Similarity=0.190  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  303 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v  303 (438)
                      ..+.|+.++.+|+.||..|+..+..|...+..|..+-..+-.+++.||-++.-..+.-
T Consensus       298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~  355 (502)
T KOG0982|consen  298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLR  355 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4566777899999999999999999999999999999888888888887776544433

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=83.60  E-value=20  Score=34.18  Aligned_cols=41  Identities=22%  Similarity=0.330  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA  287 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra  287 (438)
                      ..+|+.++..|+.++..|..++..+..++..+...+..+++
T Consensus       122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~  162 (189)
T PF10211_consen  122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ  162 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888888888888888888877777666655443

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF15294 Leu_zip: Leucine zipper

Probab=83.56  E-value=3.8  Score=41.72  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          250 LETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  294 (438)
Q Consensus       250 LE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra  294 (438)
                      |..++..|+.||..|+.++..++.++.....|+..|.+++..|+.
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~  174 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD  174 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566777777777777777777777777777777777777765

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=83.54  E-value=6.5  Score=40.64  Aligned_cols=53  Identities=21%  Similarity=0.293  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  300 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE  300 (438)
                      ++|..++..|+.+|..|+.++.....++..|..+|+.||+....+.++...-|
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEE   75 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEE   75 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666677777777777777777777777777777777777766666665544

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=83.30  E-value=30  Score=33.70  Aligned_cols=76  Identities=13%  Similarity=0.204  Sum_probs=55.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          227 RRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       227 RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      -++..-.+-..|.-..-++++..|...+..-+.+-.....+-..++++...|..|.+.+++++..|+++|..++..
T Consensus       108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q  183 (192)
T PF11180_consen  108 AQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ  183 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666667777777777777777777777777777777777788888888888888887777766644

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=83.26  E-value=12  Score=34.30  Aligned_cols=66  Identities=20%  Similarity=0.268  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN  310 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln  310 (438)
                      ...+.|+.++..|+.++..+-.+|..|+.++..+..+=..|..++..+..++...+........++
T Consensus        14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~   79 (143)
T PF12718_consen   14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLN   79 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Confidence            345555666666666666665555555555555555555555555555544444444333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=83.25  E-value=23  Score=34.54  Aligned_cols=94  Identities=14%  Similarity=0.112  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H------
Q 013689          222 DDKRARRMLSNRESARRSRRRKQA----HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV----------N------  281 (438)
Q Consensus       222 d~KR~RR~lsNRESARRSR~RKq~----~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~----------E------  281 (438)
                      -.+|.||....+.++=.-+-+=.+    ++...-.+|..|+..|+.|..+...|..-+..|.-          |      
T Consensus        21 l~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGr  100 (195)
T PF10226_consen   21 LVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGR  100 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhh
Confidence            367778888877777544433222    22233345667777777777777777765554433          2      


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Q 013689          282 --NRILKADIETLRAKVKMAEETVKRVTGLNPLLLA  315 (438)
Q Consensus       282 --N~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~  315 (438)
                        -.+++.++.....||+.+|..-+.|...|.-|.-
T Consensus       101 yta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKE  136 (195)
T PF10226_consen  101 YTASVMRQEVAQYQQKLKELEDKQEELIRENLELKE  136 (195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence              3467899999999999998887888777765443

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>smart00338 BRLZ basic region leucin zipper

Probab=83.02  E-value=5  Score=31.42  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          267 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       267 el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      .+..|..++..|..+|..|+.++..|+..+..+.+.
T Consensus        27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~   62 (65)
T smart00338       27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE   62 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666677777777777777777666655443

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=82.94  E-value=7.6  Score=31.31  Aligned_cols=50  Identities=16%  Similarity=0.207  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      .|+.++..|+....-+...++.|++-...-..+-..|+.++..|..||+.
T Consensus         1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   50 (69)
T PF04102_consen    1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE   50 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37888888888888888888877766666666666666666666555443

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>smart00340 HALZ homeobox associated leucin zipper

Probab=82.90  E-value=2.4  Score=32.14  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          269 TDVNQKYDESAVNNRILKADIETLRA  294 (438)
Q Consensus       269 ~~l~qk~~~L~~EN~~Lraqve~Lra  294 (438)
                      +.|.+-+..|..||++|+.++++||+
T Consensus         8 e~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        8 ELLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667778899999999999999974

>PRK02119 hypothetical protein; Provisional

Probab=82.81  E-value=7.7  Score=31.89  Aligned_cols=50  Identities=12%  Similarity=0.136  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  303 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v  303 (438)
                      +..|+.++..|+....-+...++.|+       ..=.....++..|+++|+.+.+.+
T Consensus         4 ~~~~e~Ri~~LE~rla~QE~tie~LN-------~~v~~Qq~~id~L~~ql~~L~~rl   53 (73)
T PRK02119          4 QQNLENRIAELEMKIAFQENLLEELN-------QALIEQQFVIDKMQVQLRYMANKL   53 (73)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777776666655554332       222223455677777776665443

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=82.80  E-value=13  Score=34.27  Aligned_cols=63  Identities=14%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689          244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  307 (438)
Q Consensus       244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~  307 (438)
                      ++.+-.|.++-..|+..--...+++..++|+ ++|+.+|..|.+|++.|+..+..+....+-+.
T Consensus        46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k  108 (135)
T KOG4196|consen   46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAYK  108 (135)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555566666677777777778888877765 57999999999999999988877765555543

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=82.79  E-value=4.8  Score=42.17  Aligned_cols=25  Identities=28%  Similarity=0.234  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          254 AGQLRAEHSSLLKGLTDVNQKYDES  278 (438)
Q Consensus       254 V~~Le~EN~~L~~el~~l~qk~~~L  278 (438)
                      ...|+.||..|++++++|+.+...|
T Consensus        34 ~~aLr~EN~~LKkEN~~Lk~eVerL   58 (420)
T PF07407_consen   34 NFALRMENHSLKKENNDLKIEVERL   58 (420)
T ss_pred             hhhHHHHhHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PRK00295 hypothetical protein; Provisional

Probab=82.54  E-value=11  Score=30.56  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTD  270 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~  270 (438)
                      +++.+||.++..++.-...|...+..
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~   30 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVE   30 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34778888888777766666665553

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=82.53  E-value=6  Score=30.93  Aligned_cols=35  Identities=20%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          266 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  300 (438)
Q Consensus       266 ~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE  300 (438)
                      ..+..|..++..|..+|..|+.++..|...+..+.
T Consensus        26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~   60 (64)
T PF00170_consen   26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK   60 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666666666666666665555444

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=82.51  E-value=18  Score=38.93  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=52.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          231 SNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       231 sNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      +++...++--.++...+.+-..+.+.|+.+...|..++..+..++.....++..|++++..+..++..++..
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q  109 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ  109 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence            455566666666666667777777777777777777777777777777778888888888887777776644

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=82.11  E-value=12  Score=39.01  Aligned_cols=21  Identities=33%  Similarity=0.313  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 013689          286 KADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       286 raqve~Lrakl~maE~~v~Rl  306 (438)
                      |++|..|+.+|..++...+.+
T Consensus       193 K~KIR~lq~~L~~~~~~~~~~  213 (342)
T PF06632_consen  193 KAKIRELQRLLASAKEEEKSP  213 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccch
Confidence            677777877777777654443

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=82.02  E-value=26  Score=36.04  Aligned_cols=87  Identities=17%  Similarity=0.279  Sum_probs=49.6

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH----------
Q 013689          220 SVDDKRARRMLSNRESARRSRRRKQAHLNELET--------------QAGQLRAEHSSLLKGLTDVNQKY----------  275 (438)
Q Consensus       220 ~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~--------------qV~~Le~EN~~L~~el~~l~qk~----------  275 (438)
                      .....|+.-+..+-+--++-|..||-+|+.||.              +...|+.||..|....+.+....          
T Consensus        14 ~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~K   93 (307)
T PF10481_consen   14 TRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVK   93 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh
Confidence            334555555555555555555555555555553              44466777777766666655433          


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          276 ----DESAVNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       276 ----~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                          .-|+.+....|.+++.|...|+..+....|.
T Consensus        94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs  128 (307)
T PF10481_consen   94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS  128 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3444455555666666666666665555554

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=81.97  E-value=11  Score=41.98  Aligned_cols=61  Identities=20%  Similarity=0.247  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR  305 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R  305 (438)
                      +.+++|+.++..|+.+...+..++..+...+..+..+..+.+.+.++|...++..+.+++.
T Consensus       328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~l  388 (594)
T PF05667_consen  328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVEL  388 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555555555555555555555555554444433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=81.86  E-value=25  Score=38.02  Aligned_cols=28  Identities=25%  Similarity=0.290  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          243 KQAHLNELETQAGQLRAEHSSLLKGLTD  270 (438)
Q Consensus       243 Kq~~leeLE~qV~~Le~EN~~L~~el~~  270 (438)
                      =++++.++|..+..|+.||..|..+...
T Consensus        46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~   73 (459)
T KOG0288|consen   46 IKAKLQEKELELNRLQEENTQLNEERVR   73 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577888899999999999988777654

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=81.56  E-value=12  Score=38.20  Aligned_cols=61  Identities=16%  Similarity=0.273  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKR  305 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~R  305 (438)
                      ..++.+..++..|+.||..+..+.+.....+..+..|+..+..++..|+.++..++.....
T Consensus       244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa  304 (309)
T PF09728_consen  244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA  304 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666777788888888888888888888888888888888888888887776655433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=81.54  E-value=6.3  Score=31.08  Aligned_cols=40  Identities=23%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      .+..++..++.++..+..+|..|+.++..|+.--...|..
T Consensus        21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~   60 (80)
T PF04977_consen   21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKV   60 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3444444455555555566666666666663333333333

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=81.51  E-value=19  Score=38.30  Aligned_cols=93  Identities=18%  Similarity=0.290  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 013689          232 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR----------ILKADIETLRAKVKMAEE  301 (438)
Q Consensus       232 NRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~----------~Lraqve~Lrakl~maE~  301 (438)
                      |.+--+++-.+|.  +...-.++-.|-.+..+|..+++.|+.+.+.+..+=.          .|++++.+|+.+++.+++
T Consensus        10 n~~~v~~~l~~R~--~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~   87 (425)
T PRK05431         10 NPEAVKEALAKRG--FPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEA   87 (425)
T ss_pred             CHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444441  2112346677888888888888888888877765432          366666777777777776


Q ss_pred             HHHHHh-ccchhhhhccCCCCCCCCC
Q 013689          302 TVKRVT-GLNPLLLARSDVPGVGMPL  326 (438)
Q Consensus       302 ~v~Rl~-~ln~~l~~~~~~~~~~~p~  326 (438)
                      ..+.+. .++.++..+..++.-..|+
T Consensus        88 ~~~~~~~~~~~~~~~iPN~~~~~vP~  113 (425)
T PRK05431         88 ELDELEAELEELLLRIPNLPHDSVPV  113 (425)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCccCCC
Confidence            666653 3334444333333334444

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=81.43  E-value=10  Score=35.19  Aligned_cols=15  Identities=53%  Similarity=0.667  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHHHH
Q 013689          281 NNRILKADIETLRAK  295 (438)
Q Consensus       281 EN~~Lraqve~Lrak  295 (438)
                      .|..|++++++|+.+
T Consensus        52 d~eeLk~~i~~lq~~   66 (155)
T PF06810_consen   52 DNEELKKQIEELQAK   66 (155)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            333333333333333

The function of this family is unknown.; GO: 0005198 structural molecule activity

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=81.39  E-value=9.1  Score=41.68  Aligned_cols=30  Identities=17%  Similarity=0.268  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYD  276 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~  276 (438)
                      +.+|+.++..|..+|..|+++++.|+++-.
T Consensus        68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~   97 (472)
T TIGR03752        68 VKELRKRLAKLISENEALKAENERLQKREQ   97 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            445555555555555555555555544433

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=81.38  E-value=23  Score=35.80  Aligned_cols=19  Identities=11%  Similarity=0.233  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 013689          286 KADIETLRAKVKMAEETVK  304 (438)
Q Consensus       286 raqve~Lrakl~maE~~v~  304 (438)
                      ..++..++.++..++..+.
T Consensus       245 ~~~l~~~~~~l~~~~~~l~  263 (423)
T TIGR01843       245 LEELTEAQARLAELRERLN  263 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444433

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=81.36  E-value=20  Score=42.53  Aligned_cols=67  Identities=16%  Similarity=0.289  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          234 ESARRSRRRKQAHLNELETQA-GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  300 (438)
Q Consensus       234 ESARRSR~RKq~~leeLE~qV-~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE  300 (438)
                      ...+.+..+..+.+.+++.+. ..+..+-.++..++..|.++...++..+..|+.+...+..++...+
T Consensus       368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~  435 (1074)
T KOG0250|consen  368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE  435 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            334444444455555555554 4444555555555555555555555666666666666555554443

>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long)

Probab=81.34  E-value=5.4  Score=38.92  Aligned_cols=51  Identities=22%  Similarity=0.269  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689          255 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL  309 (438)
Q Consensus       255 ~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l  309 (438)
                      ..--.||..|..+++.+...+..|..||..|+.-    ...++.+-++++||++-
T Consensus       121 ~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~el----ae~~~~la~~ie~l~~~  171 (200)
T PF07412_consen  121 EEALEENEKLHKEIEQKDEEIAKLKEENEELKEL----AEHVQYLAEVIERLTGQ  171 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcc
Confidence            3444588889999998888888888899888864    44445556677787653

Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=81.26  E-value=28  Score=35.86  Aligned_cols=86  Identities=16%  Similarity=0.302  Sum_probs=46.1

Q ss_pred             CCCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          217 GLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       217 ~~d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      .+...++|=+|=|++|-.==- -|..=.-+++-|..++..|+.....|.+++......+..+......|+.++..|+..|
T Consensus        85 ~l~evEekyrkAMv~naQLDN-ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L  163 (302)
T PF09738_consen   85 SLAEVEEKYRKAMVSNAQLDN-EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL  163 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567888888999832110 0111123344455555555555555555555444445555555566666666666666


Q ss_pred             HHHHHHH
Q 013689          297 KMAEETV  303 (438)
Q Consensus       297 ~maE~~v  303 (438)
                      ...++++
T Consensus       164 ~~rdeli  170 (302)
T PF09738_consen  164 KQRDELI  170 (302)
T ss_pred             HHHHHHH
Confidence            5544443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.14  E-value=24  Score=36.15  Aligned_cols=56  Identities=18%  Similarity=0.206  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      =.+.+.+|+.+...|+.+-..+......+..++..+..+...|+.++..+..+|..
T Consensus        76 l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~  131 (314)
T PF04111_consen   76 LDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDR  131 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555544444555555555555555555555555555555444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=81.11  E-value=6.7  Score=38.55  Aligned_cols=9  Identities=33%  Similarity=0.353  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 013689          259 AEHSSLLKG  267 (438)
Q Consensus       259 ~EN~~L~~e  267 (438)
                      .||..|+++
T Consensus        76 ~en~~L~~e   84 (276)
T PRK13922         76 EENEELKKE   84 (276)
T ss_pred             HHHHHHHHH
Confidence            333333333

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=80.97  E-value=12  Score=30.10  Aligned_cols=39  Identities=21%  Similarity=0.371  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK  297 (438)
Q Consensus       252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~  297 (438)
                      .++...+..|..+.++|.       .....|+.|.++|..|+.++.
T Consensus        18 eEL~kvk~~n~~~e~kLq-------eaE~rn~eL~~ei~~L~~e~e   56 (61)
T PF08826_consen   18 EELTKVKSANLAFESKLQ-------EAEKRNRELEQEIERLKKEME   56 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555       555566666666666655543

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules

Probab=80.94  E-value=15  Score=31.94  Aligned_cols=64  Identities=16%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGL  309 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~l  309 (438)
                      +.|.+++.+--++...|..|..++..+.++...-.. +-.++.++..+++.++.......-+.+.
T Consensus        17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v   80 (106)
T PF05837_consen   17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNV   80 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555556666666666666655554443333 5667788888888887776655555443

Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=80.92  E-value=6.2  Score=42.38  Aligned_cols=71  Identities=21%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhccchhhhhc
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE-----TVKRVTGLNPLLLAR  316 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~-----~v~Rl~~ln~~l~~~  316 (438)
                      ....+..|...|+.|-..+..+++..+-.++.|..||..|+.+.-.+++..++...     .-+|+..+|.+....
T Consensus        28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~  103 (459)
T KOG0288|consen   28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR  103 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667777778888888888888888888888888998888776666665555432     234566666664444

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=80.81  E-value=17  Score=40.41  Aligned_cols=64  Identities=19%  Similarity=0.369  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          234 ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVK  297 (438)
Q Consensus       234 ESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~  297 (438)
                      +.+.+.|..-...+.+++..+..|+.|...++.++..+......|..||..|+.++..++.+|.
T Consensus       130 ~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld  193 (546)
T KOG0977|consen  130 EKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD  193 (546)
T ss_pred             HHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4455555555566777778888888888888888888888888888888888888888776553

>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]

Probab=80.67  E-value=16  Score=39.83  Aligned_cols=75  Identities=24%  Similarity=0.430  Sum_probs=47.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 013689          224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES--------AVNNRILKADIETLRAK  295 (438)
Q Consensus       224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L--------~~EN~~Lraqve~Lrak  295 (438)
                      +..++|.+.-|.-+    |-.+.|+||+.++..-+.|+....-+-..|+.+..++        -.||..+|.+++.||..
T Consensus       242 ehv~km~kdle~Lq----~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~  317 (575)
T KOG4403|consen  242 EHVNKMMKDLEGLQ----RAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVA  317 (575)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34455555555443    3346677777777777777665555555555554422        35788888899999988


Q ss_pred             HHHHHHH
Q 013689          296 VKMAEET  302 (438)
Q Consensus       296 l~maE~~  302 (438)
                      |..||..
T Consensus       318 L~kAEke  324 (575)
T KOG4403|consen  318 LEKAEKE  324 (575)
T ss_pred             HHHHHHH
Confidence            8887643

>PHA03162 hypothetical protein; Provisional

Probab=80.54  E-value=4.9  Score=37.01  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          241 RRKQAHLNELETQAGQLRAEHSSLLKGLT  269 (438)
Q Consensus       241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~  269 (438)
                      -+|+.-+++|..++.+|+.||..|++++.
T Consensus         9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~   37 (135)
T PHA03162          9 PKAQPTMEDLAAEIAKLQLENKALKKKIK   37 (135)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677899999999999999999999993

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.49  E-value=12  Score=39.49  Aligned_cols=59  Identities=19%  Similarity=0.274  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      ++.++.|....+.|+.--++|..-.+.|......|+.+-..|+++++-|.+|+.++.+-
T Consensus       224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~  282 (365)
T KOG2391|consen  224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK  282 (365)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            34455555555555555555555555555555566666666666677777776664433

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=80.47  E-value=5.6  Score=39.20  Aligned_cols=39  Identities=18%  Similarity=0.235  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIE  290 (438)
Q Consensus       252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve  290 (438)
                      .+.+.++.++..|.++.+.++..|+.|..||..|+.+++
T Consensus       172 ~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  172 KKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            334444444455555555555566666666666655543

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=80.32  E-value=23  Score=33.72  Aligned_cols=52  Identities=15%  Similarity=0.318  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 013689          244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE-SAVNNRILKADIETLRAK  295 (438)
Q Consensus       244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~-L~~EN~~Lraqve~Lrak  295 (438)
                      ...+.+|+.+...|+.+...|..+++.+.++... ...+++..+.++..|++.
T Consensus       126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~  178 (189)
T PF10211_consen  126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ  178 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555444444443 233344444444444333

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=80.27  E-value=20  Score=37.11  Aligned_cols=74  Identities=16%  Similarity=0.267  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          233 RESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       233 RESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                      -|+++|=....+.++.+++.....-+........+-+.+.+++..+..||--|++|+.....|....|.+|--+
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini  254 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI  254 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            46888888888888888888777766666677777788888999999999999999999988887766555443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=80.24  E-value=25  Score=40.07  Aligned_cols=10  Identities=30%  Similarity=0.650  Sum_probs=4.4

Q ss_pred             hhHHHHHHhhh
Q 013689           36 EWELEKFLQEV   46 (438)
Q Consensus        36 EW~FerfLeE~   46 (438)
                      |.+|| +|+|+
T Consensus       191 ~~~~~-~l~~~  200 (697)
T PF09726_consen  191 EFYMQ-LLQQA  200 (697)
T ss_pred             HHHHH-HHHHh
Confidence            44442 44443

; GO: 0016021 integral to membrane

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=80.19  E-value=28  Score=34.85  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          243 KQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  303 (438)
Q Consensus       243 Kq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v  303 (438)
                      +...+..|..++..++.+-..|..++..+...+..+..+=..|+.++..++..+..+++.+
T Consensus        87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~  147 (239)
T COG1579          87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL  147 (239)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777777777777777777777777777777776667666666666665554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	438
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	3e-14
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	2e-10
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	5e-09
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	1e-08
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	2e-08
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	2e-08
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	6e-08
2wt7_B	90	Transcription factor MAFB; transcription, transcri	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	4e-07
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	2e-05
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	5e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 66.3 bits (162), Expect = 3e-14
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKY 275
           KR  R++ NRE+AR SRR+K+ ++  LE +   L  ++ +L++ L  +   Y
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 264
           KR + +  NR +A RSR++++  +  LE +A  L + +  L
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQL 41

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 266
           K  R+ + NR +A +SR+RK   +  LE +   L+A++S L  
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELAS 43

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 18/74 (24%), Positives = 29/74 (39%)

Query: 219 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES 278
           + +  K+ RR L NR  A   R ++     ELE Q  +L+ E   L      +  + D  
Sbjct: 32  EIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDAL 91

Query: 279 AVNNRILKADIETL 292
                 L+    T+
Sbjct: 92  RSKYEALQNFARTV 105

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 264
           K+ ++M  N+ +A R R++K+A    L  +  +L  ++ +L
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEAL 42

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLK 266
           +KR  R   N+ +A + R R++   + L+ +  QL  E S+L  
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQT 44

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 216 EGLDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 264
           E  D    KRAR    N E+ARRSR RK   + +LE +  +L +++  L
Sbjct: 5   ESSDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHL 49

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 277
           K+ RR L NR  A+  R ++    + LE +  QL  +   L + ++ + ++ D 
Sbjct: 27  KQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 60/424 (14%), Positives = 115/424 (27%), Gaps = 122/424 (28%)

Query: 1   MNSVFSADDFSDSFLSSPSPPPASFHALPMNRSQSEWELEKFLQEVTVSPRAISSSSASD 60
             S+ S ++  D  + S      +        S+ E  ++KF++EV              
Sbjct: 42  PKSILSKEEI-DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-----------RI 89

Query: 61  NSVPAVIGPSVMSKSRAYEIGDDDVVEIKKSHRDQSL-DPPVIPSSTAPVDSDEYRAYLK 119
           N         +MS  +  +     +  +    RD+   D  V             R    
Sbjct: 90  NY------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS------RLQPY 137

Query: 120 TKLDLACAAVALRTAPVKPEDKSSLIENQTQAAKPSE-LGSQAMATGTHPKADFRPLGSA 178
            KL                  + +L+E      +P++ +    +  G+         G  
Sbjct: 138 LKL------------------RQALLE-----LRPAKNVLIDGVL-GS---------GKT 164

Query: 179 DLPAVQARPAAQVRQSTSG-----SSREDSDDDELEGDTETIEGLDSVDDKRARRMLSNR 233
            +            +             +S +  LE   + +  +D     R+    + +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 234 ---ESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNN--RIL--- 285
               S +   RR               +   + LL  L +V      +A N   +IL   
Sbjct: 225 LRIHSIQAELRRLLKS-----------KPYENCLLV-LLNVQNAKAWNAFNLSCKILLTT 272

Query: 286 --KADIETLRAKVKMAEETVKRVTGLNPL----LLARSDVPGVGMPLVNVPLDASRNATH 339
             K   + L A              L P     LL +     +     ++P +     T+
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLPREVLT--TN 326

Query: 340 P---------MQPNPNQF----------FHQAI-PSISTPTPN-----HQSLDSSFPSNI 374
           P         ++     +              I  S++   P         L S FP + 
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSA 385

Query: 375 QLPT 378
            +PT
Sbjct: 386 HIPT 389

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 48/414 (11%), Positives = 111/414 (26%), Gaps = 132/414 (31%)

Query: 22  PASFHALPMNRSQSEWELEKFLQEVTVSPRAI------------SSSSASDNSVPAVIGP 69
              F    ++R Q   +L + L E+  +   +            +        V   +  
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 70  SV--MSKSRAYEIGDDDVVEIKKS--HR-DQSLDPPVIPSSTAPVDSDEYRAYLKTKL-- 122
            +  ++         + V+E+ +   ++ D +       SS   +     +A L+  L  
Sbjct: 183 KIFWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 123 ----------------------DLACAAVALRTAPVKPEDKSSLIENQTQAAKPSELGSQ 160
                                 +L+C     +   +    K   + +   AA  + +   
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSC-----KIL-LTTRFKQ--VTDFLSAATTTHISLD 292

Query: 161 AMATG-THPK-----ADFRPLGSADLP--AVQARP------AAQVRQSTSGSSR-EDSDD 205
             +   T  +       +      DLP   +   P      A  +R   +     +  + 
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 206 DELEGDTE-TIEGLDSVDDKRARRMLS----------------------------NRESA 236
           D+L    E ++  L+  + ++    LS                              +  
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 237 RRS---RRRKQA-------HLNELETQAGQLRAEHSSLL------------KGLTDVNQK 274
           + S   ++ K++       +L EL+ +     A H S++              +     +
Sbjct: 413 KYSLVEKQPKESTISIPSIYL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 275 Y--------------DESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLL 314
           Y               E     R++  D   L  K++           +   L 
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 23/65 (35%), Positives = 32/65 (49%)

Query: 222 DDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVN 281
            +  ++R   NR + R  R+RK+ HL  LETQ   L+  HSS       + QK  +    
Sbjct: 6   QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65

Query: 282 NRILK 286
            RILK
Sbjct: 66  LRILK 70

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 21/81 (25%)

Query: 218 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDE 277
           +D   D+   R   N  + R+SR + +    E + +  +L AE                 
Sbjct: 9   VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAE----------------- 51

Query: 278 SAVNNRILKADIETLRAKVKM 298
               N  L+  +E L  ++  
Sbjct: 52  ----NERLQKKVEQLSRELST 68

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 218 LDSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL 264
           +D   D+   R   N  + R+SR + +    E + +  +L AE+  L
Sbjct: 9   VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERL 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	438
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.5
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.25
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.19
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.14
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.05
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.88
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.85
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.46
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.44
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.37
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.09
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.03
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.72
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	95.49
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.44
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	94.69
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.58
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	93.81
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	93.63
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	93.23
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.49
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.19
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	92.06
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.39
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.13
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.58
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	90.01
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	89.87
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	89.62
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	89.49
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	89.25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.22
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	89.12
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	88.93
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	88.9
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	88.89
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	88.77
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	88.57
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	88.04
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	88.02
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	87.89
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	87.89
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	87.84
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	87.76
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	87.66
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	87.52
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	87.5
2wvr_A	209	Geminin; DNA replication license, DNA replication	87.42
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	87.15
3m48_A	33	General control protein GCN4; leucine zipper, synt	87.09
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	87.02
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	86.87
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	86.86
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	86.79
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	86.61
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	86.58
3bas_A	89	Myosin heavy chain, striated muscle/general contro	86.09
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	85.97
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	85.91
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	85.68
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	85.2
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	84.26
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	84.16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	84.11
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	83.71
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	83.66
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	83.41
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	83.34
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	83.33
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	83.06
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	82.95
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	82.39
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	82.37
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	82.23
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.2
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	81.89
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	81.5
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	81.3
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	80.96
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	80.59
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	80.38
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	80.28
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	80.26
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	80.21
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	80.13
2hy6_A	34	General control protein GCN4; protein design, para	80.11

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.50  E-value=2.6e-14  Score=109.35  Aligned_cols=53  Identities=34%  Similarity=0.596  Sum_probs=49.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  276 (438)
Q Consensus       224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~  276 (438)
                      ||++||++||+||++||+||++|+++||.+|..|+.||..|..++..|++.|.
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~   53 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS   53 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999998887653

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.25  E-value=2.4e-11  Score=94.81  Aligned_cols=54  Identities=24%  Similarity=0.390  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          223 DKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  276 (438)
Q Consensus       223 ~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~  276 (438)
                      +||.+|+++||++|++||.||++++.+|+.+|..|+.+|..|..++..|...+.
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~   54 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKE   54 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999998875554433

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.19  E-value=7.5e-11  Score=91.17  Aligned_cols=50  Identities=28%  Similarity=0.407  Sum_probs=46.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ  273 (438)
Q Consensus       224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~q  273 (438)
                      ||.+|+++||++|++||.||++|+++|+.+|..|+.+|..|..++..|..
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~   50 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN   50 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999988885443

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.14  E-value=7.4e-11  Score=92.47  Aligned_cols=47  Identities=28%  Similarity=0.388  Sum_probs=41.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          230 LSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYD  276 (438)
Q Consensus       230 lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~  276 (438)
                      .+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|.+.+.
T Consensus        15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44999999999999999999999999999999999888887776553

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.05  E-value=3.8e-10  Score=87.59  Aligned_cols=50  Identities=30%  Similarity=0.444  Sum_probs=45.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQ  273 (438)
Q Consensus       224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~q  273 (438)
                      |+.+|..+||++|++||.||++++++|+.+|..|+.+|..|..++..|..
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~   50 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE   50 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999988875443

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.88  E-value=5.2e-09  Score=83.84  Aligned_cols=59  Identities=34%  Similarity=0.382  Sum_probs=45.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNR  283 (438)
Q Consensus       225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~  283 (438)
                      ..||+..||.++|..|.||++|+.+||.+|..|+.++..|..++..|..++..|..||.
T Consensus         9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~   67 (70)
T 1gd2_E            9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR   67 (70)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999888754444444444444443333

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.85  E-value=7.8e-09  Score=80.80  Aligned_cols=59  Identities=25%  Similarity=0.335  Sum_probs=45.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          224 KRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI  289 (438)
Q Consensus       224 KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqv  289 (438)
                      |+.+++.+||.+|+|+|.||++++++|+.++..|+.+|..|..++..       |..|+..|+.-+
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~-------L~~E~~~Lk~ll   60 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS-------LAKEIQYLKDLI   60 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999998874       445555555433

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.46  E-value=8.7e-07  Score=73.63  Aligned_cols=52  Identities=25%  Similarity=0.256  Sum_probs=45.0

Q ss_pred             CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          219 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTD  270 (438)
Q Consensus       219 d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~  270 (438)
                      |..+++-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..
T Consensus        10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~   61 (87)
T 1hjb_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ   61 (87)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345666777889999999999999999999999999999999888888773

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.44  E-value=9.5e-07  Score=72.03  Aligned_cols=54  Identities=24%  Similarity=0.263  Sum_probs=45.9

Q ss_pred             CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          219 DSVDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVN  272 (438)
Q Consensus       219 d~~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~  272 (438)
                      |..+.+-..|..+|.++|+|||.++++...+++.++..|+.||..|..++..|.
T Consensus        10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~   63 (78)
T 1gu4_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS   63 (78)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455666788999999999999999999999999999999999988887544

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.37  E-value=1.8e-08  Score=86.57  Aligned_cols=44  Identities=34%  Similarity=0.446  Sum_probs=36.5

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL  264 (438)
Q Consensus       221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L  264 (438)
                      .+.|.+||.++||.+|++||.||.++.++||.++..|..+...|
T Consensus        34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L   77 (107)
T 3a5t_A           34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL   77 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999997776555544433

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.09  E-value=1.7e-05  Score=66.32  Aligned_cols=51  Identities=25%  Similarity=0.346  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          221 VDDKRARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDV  271 (438)
Q Consensus       221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l  271 (438)
                      ...|.+||.++||.+|+-||.||.....+||.++..|..+...|..++..+
T Consensus        24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~   74 (90)
T 2wt7_B           24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL   74 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468889999999999999999999999999988888777776666555533

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.03  E-value=0.0014  Score=47.71  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADI  289 (438)
Q Consensus       244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqv  289 (438)
                      |+|+.+||.+++.|+..|.+|..++.       .|..||.-||+-+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqvl   40 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLS-------TLQNENQMLRHIL   40 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHh
Confidence            58999999999999999998888877       6678999888654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.72  E-value=0.081  Score=46.91  Aligned_cols=61  Identities=18%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          242 RKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       242 RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      +.+...+.|+.++..+..|...|+.++..++.++..+..++..|+.++..|+.++..+|..
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~  132 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE  132 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455678888888888888888888888888888888888888888888888887777644

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=95.49  E-value=0.0064  Score=50.94  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 013689          221 VDDKRARRMLSNRESARRSRRRKQAHLNELET  252 (438)
Q Consensus       221 ~d~KR~RR~lsNRESARRSR~RKq~~leeLE~  252 (438)
                      ...|.+||..+||.+|+++|+||....+.|+.
T Consensus        59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            46788999999999999999999998887753

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.44  E-value=0.13  Score=42.23  Aligned_cols=43  Identities=12%  Similarity=0.128  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD  288 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq  288 (438)
                      -++.||.+|.++-.....|..++..|+++...|..+|..++..
T Consensus         7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~   49 (81)
T 2jee_A            7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQ   49 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3566666666666655555555555555555555555553333

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=94.69  E-value=0.11  Score=39.41  Aligned_cols=46  Identities=22%  Similarity=0.290  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  292 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L  292 (438)
                      .+.|-.||+.|+.||..|++++++-..++..|+.|-.-+|+=+..|
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l   50 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL   50 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence            4778899999999999999999999999999888877776554444

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.58  E-value=0.2  Score=41.12  Aligned_cols=53  Identities=15%  Similarity=0.283  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      -+.-|+.+++.|+.+|..|..+...++.....|..||..|+.+....+.+|..
T Consensus        21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~   73 (81)
T 2jee_A           21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778888888888888888888888888999999999988888776644

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=93.81  E-value=0.23  Score=38.84  Aligned_cols=41  Identities=24%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA  287 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra  287 (438)
                      |..-|.+|.+|..-|..|..++..++.+++.|..||..||.
T Consensus        22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            44567889999999999999999999999999999999984

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=93.63  E-value=0.47  Score=43.06  Aligned_cols=37  Identities=19%  Similarity=0.048  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD  288 (438)
Q Consensus       252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq  288 (438)
                      .-+..|..|...|..++..++++...+..||..|-..
T Consensus        96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R  132 (152)
T 3a7p_A           96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR  132 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555555555555555555555555555433

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=93.23  E-value=0.43  Score=39.41  Aligned_cols=51  Identities=16%  Similarity=0.211  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689          254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  308 (438)
Q Consensus       254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~  308 (438)
                      +..--.||..|..++..+......|..+|..|+    +|-.+++.+-++++||+|
T Consensus        33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L~~   83 (83)
T 1wlq_A           33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERLSN   83 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence            334456888999999988888888999998887    455566667778888865

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.49  E-value=0.94  Score=40.07  Aligned_cols=61  Identities=10%  Similarity=0.186  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVT  307 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~  307 (438)
                      +-.+..++..|+.+...+.+++..|..++..+..++..++.++++|+.++..++..+.++.
T Consensus        70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556777777777777777777777777888888888888888888887777777664

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.19  E-value=1.5  Score=49.92  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          272 NQKYDESAVNNRILKADIETLRAKVKMAE  300 (438)
Q Consensus       272 ~qk~~~L~~EN~~Lraqve~Lrakl~maE  300 (438)
                      +++...|..||.+|++++.+|...+...+
T Consensus      1022 ~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A         1022 EQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555677788888888888875555444

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=92.06  E-value=0.38  Score=40.85  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYD  276 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~  276 (438)
                      .+..|..+|+.|+.||..|++++..|.-++.
T Consensus        13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le   43 (100)
T 1go4_E           13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE   43 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777788888888888888777665443

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.39  E-value=4.1  Score=34.00  Aligned_cols=52  Identities=4%  Similarity=0.104  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      ...+.++.++..++.++..+-.++..|+.++..+..+=..+..++.....+|
T Consensus        23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL   74 (101)
T 3u1c_A           23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL   74 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555555555555544444444444444444333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.13  E-value=2.3  Score=35.28  Aligned_cols=55  Identities=9%  Similarity=0.100  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      ....+.++.++..++.++..+..++..|+.++..+..+=..+..++..+..+|..
T Consensus        22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~   76 (101)
T 3u59_A           22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555444444444444444333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.06  E-value=6  Score=32.95  Aligned_cols=79  Identities=16%  Similarity=0.117  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689          232 NRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN  310 (438)
Q Consensus       232 NRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln  310 (438)
                      -.+.|...-..-...+.+++.+..+++.+...|.+++..+...+..+...=...+..++.-...+..+|..|..|....
T Consensus        17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri   95 (101)
T 3u1c_A           17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555445555556666666666666666666666666665555544444444455555555555555554444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.58  E-value=1.7  Score=44.57  Aligned_cols=61  Identities=11%  Similarity=0.081  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                      .+..++.+.+.++.+++.+.++++...+++..+..|...|+.+++..++++..+.+.+..+
T Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~  570 (597)
T 3oja_B          510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK  570 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            3344455555555566666666666666666666666666666666555555544444333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=90.01  E-value=7.3  Score=32.23  Aligned_cols=82  Identities=18%  Similarity=0.209  Sum_probs=55.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689          229 MLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  308 (438)
Q Consensus       229 ~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~  308 (438)
                      |---.+.|..--..-...+.+++.+...++.+...|.+++..+...+..+...=..+...++.-+..+..+|..|..|..
T Consensus        14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR   93 (101)
T 3u59_A           14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR   93 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666666777777777777888888888887777777766666566666666666666667766655544


Q ss_pred             cc
Q 013689          309 LN  310 (438)
Q Consensus       309 ln  310 (438)
                      ..
T Consensus        94 ri   95 (101)
T 3u59_A           94 RI   95 (101)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=89.87  E-value=2.7  Score=34.75  Aligned_cols=40  Identities=18%  Similarity=0.216  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          267 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       267 el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                      +...+.++...|+.||..|+++|+.|...+..+..++..+
T Consensus        37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~   76 (87)
T 1hjb_A           37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL   76 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3345566777888899999999988888887777665443

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=89.62  E-value=0.96  Score=34.92  Aligned_cols=41  Identities=12%  Similarity=0.185  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  303 (438)
Q Consensus       263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v  303 (438)
                      .-..+...+..+...|..+|..|+.++..|+..+..+.+++
T Consensus        20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll   60 (63)
T 1ci6_A           20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455677778888999999999999999999888877665

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=89.49  E-value=4.3  Score=31.06  Aligned_cols=38  Identities=13%  Similarity=0.115  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          266 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  303 (438)
Q Consensus       266 ~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v  303 (438)
                      ..+..|..++..|..+|..|+.++..|+..+..+..++
T Consensus        23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l   60 (63)
T 2wt7_A           23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667778888999999999999999998888777654

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=89.25  E-value=2.1  Score=34.25  Aligned_cols=51  Identities=14%  Similarity=0.250  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK  304 (438)
Q Consensus       254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~  304 (438)
                      +..|+.+......++..+..++..+...+..+..++..|.+|++.+|+.++
T Consensus         8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld   58 (81)
T 1ic2_A            8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD   58 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333334443334444444444444444444444443333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.22  E-value=6  Score=40.49  Aligned_cols=63  Identities=10%  Similarity=0.091  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN  310 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln  310 (438)
                      +.|+..+..++.+.+.+..++...+++..+...+-+.|+.++.+|++++...++.+.++...+
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~  567 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQET  567 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Confidence            556666667777777777777777777777777777777888888888888888888776654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=89.12  E-value=1.1  Score=34.00  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          266 KGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       266 ~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      ..+..|+.++..|..+|..|+.++..|+..+..+..+
T Consensus        22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~   58 (61)
T 1t2k_D           22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL   58 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777888889999999998888887776654

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=88.93  E-value=3.6  Score=37.82  Aligned_cols=56  Identities=20%  Similarity=0.179  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          237 RRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRA  294 (438)
Q Consensus       237 RRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lra  294 (438)
                      ---|.||++  .+|...+..++..+..|..++..|......|..+...|.+++..=|+
T Consensus        28 ~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~   83 (168)
T 3o0z_A           28 TAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR   83 (168)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455554  66777777777777777777776666666666666666655554433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=88.90  E-value=10  Score=35.37  Aligned_cols=53  Identities=23%  Similarity=0.278  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMA  299 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~ma  299 (438)
                      +..|+.++..|+..+..|..+|..|.+....++...|.+..-++.+..|+..+
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a  142 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA  142 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            67778888888888888888888888888888888888888888877777654

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=88.89  E-value=11  Score=32.55  Aligned_cols=57  Identities=23%  Similarity=0.274  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      .+..|+.++..|+..|..|...+.+|.+....|+...|..-.-++.+..|+..+=+.
T Consensus        36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiEr   92 (111)
T 2v66_B           36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIER   92 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            366788899999999999999999999999999999999888888888888765433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=88.77  E-value=5.5  Score=36.62  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          225 RARRMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAE  300 (438)
Q Consensus       225 R~RR~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE  300 (438)
                      -...+..-=+.=||.|.+-.+.+.||+.++..|+.|...++..+.       .+..+|+.|...+..|.......+
T Consensus        70 e~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~-------k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           70 DYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE-------KVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            334455555566777777777777777777776666666555544       677888888888887776554444

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=88.57  E-value=1.5  Score=37.42  Aligned_cols=45  Identities=20%  Similarity=0.209  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETL  292 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~L  292 (438)
                      -+||.+++.|+.||..|+..-...-.+..+|+.|=..|+++...|
T Consensus        40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L   84 (104)
T 3s9g_A           40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL   84 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence            457777777777777777643333333444444444444444333

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=88.04  E-value=2.5  Score=32.59  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=25.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          228 RMLSNRESARRSRRRKQAHLNELETQAGQLRAEHSSL  264 (438)
Q Consensus       228 R~lsNRESARRSR~RKq~~leeLE~qV~~Le~EN~~L  264 (438)
                      ..-+||.++|++|.|=++.|+....-...-..||..|
T Consensus         5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl   41 (63)
T 2c9l_Y            5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL   41 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence            3468999999999998877766654444444444444

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=88.02  E-value=0.5  Score=45.94  Aligned_cols=46  Identities=17%  Similarity=0.213  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 013689          267 GLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPL  312 (438)
Q Consensus       267 el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~  312 (438)
                      ++..++.++..|...|..|++.+.+|+.+|..+++.+++|..--.+
T Consensus        55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~  100 (251)
T 3m9b_A           55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSG  100 (251)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence            3445666667777888888888888888888888888888655433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=87.89  E-value=8.9  Score=34.75  Aligned_cols=58  Identities=10%  Similarity=0.068  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 013689          253 QAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLN  310 (438)
Q Consensus       253 qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln  310 (438)
                      .+..|+.|...|..++..+...+.+-...+..|+.++..|+-++.++|+...++...|
T Consensus        69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN  126 (152)
T 3a7p_A           69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH  126 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444444444433

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=87.89  E-value=2.6  Score=33.88  Aligned_cols=49  Identities=12%  Similarity=0.281  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      .++..+++.++.+|..|..++..+++.+..-..+-..++.++..|-..|
T Consensus         3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L   51 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL   51 (72)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999888888777877776664443

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=87.84  E-value=9.2  Score=33.00  Aligned_cols=75  Identities=13%  Similarity=0.131  Sum_probs=56.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          229 MLSNRESARRSRRRKQAHLNELETQAGQLRA---EHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  303 (438)
Q Consensus       229 ~lsNRESARRSR~RKq~~leeLE~qV~~Le~---EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v  303 (438)
                      +..|-.+|-..=..|+..+++|..++.+++.   ...-|..++......|..-...-..|..+.+.|..+|..+...+
T Consensus        29 L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~  106 (110)
T 2v4h_A           29 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF  106 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            3344456777777799999999999998888   67778999999888888777777777777777777666555443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=87.76  E-value=3.2  Score=35.13  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      ..+..|+.++...+.+...|..++..-+.+...++.++..|..+++.|.+.|
T Consensus        12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL   63 (97)
T 2eqb_B           12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   63 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777777777777777777777778888888888888887665

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=87.66  E-value=0.86  Score=30.63  Aligned_cols=24  Identities=38%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          273 QKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       273 qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      .-+..|+.||+.||+++++|-+|+
T Consensus         6 allasleaenkqlkakveellakv   29 (31)
T 1p9i_A            6 ALLASLEAENKQLKAKVEELLAKV   29 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345578899999999999997775

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=87.52  E-value=14  Score=34.46  Aligned_cols=55  Identities=13%  Similarity=0.037  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          252 TQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       252 ~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                      .++..|+.+...|+.....+..++..|+..|..|......+...+.-.+......
T Consensus        88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~a  142 (189)
T 2v71_A           88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQA  142 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3455555555555555555555555566666555555555544444444444333

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=87.50  E-value=7.1  Score=40.98  Aligned_cols=81  Identities=15%  Similarity=0.116  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhh
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAV-----------NNRILKADIETLRAKVKMAEETVKRVT-GLNPLL  313 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~-----------EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l  313 (438)
                      .+.+|..+...|+.+-..|+.+...+.+++..+..           +-..|++++.+|..+++.+++..+.+. .++.++
T Consensus        71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l  150 (501)
T 1wle_A           71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA  150 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444433221           223566666666666666665555542 334444


Q ss_pred             hhccCCCCCCCCC
Q 013689          314 LARSDVPGVGMPL  326 (438)
Q Consensus       314 ~~~~~~~~~~~p~  326 (438)
                      ..+.+++.-..|.
T Consensus       151 ~~iPN~~~~~vP~  163 (501)
T 1wle_A          151 LRLPNQTHPDVPV  163 (501)
T ss_dssp             TTSCCCCCTTCCC
T ss_pred             HhCCCCCCCCCCC
Confidence            4444444444444

>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}

Probab=87.42  E-value=2.6  Score=39.87  Aligned_cols=51  Identities=18%  Similarity=0.224  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689          254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  308 (438)
Q Consensus       254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~  308 (438)
                      +..--.||..|..+|..+......|..+|..|+.=++.+    +.+.+++++|.+
T Consensus       110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~----q~la~vi~~l~~  160 (209)
T 2wvr_A          110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV----QYMAELIERLNG  160 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence            334456899999999988888888889998888655554    445556677754

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=87.15  E-value=1.2  Score=35.35  Aligned_cols=37  Identities=11%  Similarity=0.303  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          262 SSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       262 ~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      ..|..++..+...+..+..||..|+.++..|+.++..
T Consensus        32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~   68 (70)
T 1gd2_E           32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555566788888888888888877653

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=87.09  E-value=0.66  Score=32.25  Aligned_cols=27  Identities=15%  Similarity=0.313  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQ  273 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~q  273 (438)
                      +..||.+|+.|-.+|..|..++..|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            456788888887777777777766553

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=87.02  E-value=4  Score=34.77  Aligned_cols=52  Identities=23%  Similarity=0.311  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Q 013689          263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTGLNPLLL  314 (438)
Q Consensus       263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~  314 (438)
                      .|.++.-.|..++..++.||+.|+......-+++..++..|.||+..|+.|.
T Consensus        34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~   85 (104)
T 3s9g_A           34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL   85 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence            3445555555556666667777766666666666666666666666665543

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=86.87  E-value=1.1  Score=31.74  Aligned_cols=30  Identities=13%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKY  275 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~  275 (438)
                      ++..||.+|+.|-.+|+.|..++..|+..+
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll   31 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN   31 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            466788888887777777777776665433

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=86.86  E-value=2.4  Score=31.05  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLT  269 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~  269 (438)
                      +..||.+|..|+.||..|+++.-
T Consensus         5 vaqlenevaslenenetlkkknl   27 (49)
T 3he5_A            5 VAQLENEVASLENENETLKKKNL   27 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccHHHHHhcc
Confidence            56788899999999998887753

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=86.79  E-value=5.9  Score=45.14  Aligned_cols=13  Identities=23%  Similarity=0.715  Sum_probs=7.1

Q ss_pred             chhHHHHHHhhhh
Q 013689           35 SEWELEKFLQEVT   47 (438)
Q Consensus        35 SEW~FerfLeE~~   47 (438)
                      .-|.|+.|++--.
T Consensus       700 ~R~~~~eF~~RY~  712 (1080)
T 2dfs_A          700 SRWTYQEFFSRYR  712 (1080)
T ss_dssp             EEEEHHHHHHHHT
T ss_pred             chhhHHHHHHHHH
Confidence            3456666665543

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=86.61  E-value=1.6  Score=35.67  Aligned_cols=49  Identities=12%  Similarity=0.241  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          248 NELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       248 eeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      +++..+++.++.+|..|..++..+++.+..-..+-..++.++..|-..|
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L   57 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL   57 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788899999999999999999988888877777777776664443

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=86.58  E-value=1.8  Score=35.39  Aligned_cols=44  Identities=14%  Similarity=0.104  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          255 GQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKM  298 (438)
Q Consensus       255 ~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~m  298 (438)
                      ..--.||..|..+++.+...+..|..||+.|+.=+...+.-+.+
T Consensus        30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~laev   73 (79)
T 2zxx_A           30 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEV   73 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34446899999999999999999999999998666665544433

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=86.09  E-value=12  Score=30.33  Aligned_cols=53  Identities=23%  Similarity=0.308  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          244 QAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       244 q~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      .....+|+.+...|..+...|..++.++..++..|......|..++..|..+|
T Consensus        34 e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl   86 (89)
T 3bas_A           34 ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34446677777777777777777777777777777777777777777665554

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=85.97  E-value=1.1  Score=31.30  Aligned_cols=27  Identities=15%  Similarity=0.193  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVN  272 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~  272 (438)
                      ++..||.+|..|-.+|+.|..++..|+
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk   28 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLK   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            456777777777777777766666554

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=85.91  E-value=4.2  Score=32.91  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          269 TDVNQKYDESAVNNRILKADIETLRAKVKMAE  300 (438)
Q Consensus       269 ~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE  300 (438)
                      ..+.+++..|..||..|+.+|..|+..+..+.
T Consensus        39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           39 LETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666777777777766665554433

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=85.68  E-value=6  Score=33.31  Aligned_cols=74  Identities=14%  Similarity=0.136  Sum_probs=58.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          229 MLSNRESARRSRRRKQAHLNELETQAGQLR---AEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       229 ~lsNRESARRSR~RKq~~leeLE~qV~~Le---~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      +..|..+|-..=..|+..+++|...+.+++   ..+.-|..++......|..-...-..|..+.+.|..+|..+...
T Consensus         7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q   83 (94)
T 3jsv_C            7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE   83 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            344556677777779999999999888888   67777999999999999888888888888888887776665543

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=85.20  E-value=8.2  Score=39.37  Aligned_cols=82  Identities=21%  Similarity=0.258  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCCC
Q 013689          245 AHLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGV  322 (438)
Q Consensus       245 ~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L-~~EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~~  322 (438)
                      ..+.+|..+...+..+-..|+.+...+.+++... ..+-..|++++..|..+++.+++..+.+. .++.++..+.+++.-
T Consensus        28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~  107 (421)
T 1ses_A           28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWP  107 (421)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            4444555555555555555555555554443210 01224566666666666666665555542 333444444444444


Q ss_pred             CCCC
Q 013689          323 GMPL  326 (438)
Q Consensus       323 ~~p~  326 (438)
                      +.|.
T Consensus       108 ~vp~  111 (421)
T 1ses_A          108 GAPV  111 (421)
T ss_dssp             TSCS
T ss_pred             CCCC
Confidence            4444

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=84.26  E-value=14  Score=38.11  Aligned_cols=79  Identities=13%  Similarity=0.122  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCCCCC
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAV---NNRILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGVGM  324 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~---EN~~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~~~~  324 (438)
                      +|..+...|..+-..|+.+...+.+++..+..   +-..|++++..|..+++.+++..+.+. .++.++..+.+++.-..
T Consensus        35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~v  114 (455)
T 2dq0_A           35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSV  114 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence            34444444444444444444444443333211   123455555555555555555544432 23344444444444444


Q ss_pred             CCC
Q 013689          325 PLV  327 (438)
Q Consensus       325 p~~  327 (438)
                      |.+
T Consensus       115 P~g  117 (455)
T 2dq0_A          115 PVG  117 (455)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=84.16  E-value=3  Score=31.23  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKA  287 (438)
Q Consensus       251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lra  287 (438)
                      +.++..|+.-|..|..+++.|+..+..++.|+.+|++
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~   39 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK   39 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            5678888888888888888888888887777766653

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=84.11  E-value=5.8  Score=45.23  Aligned_cols=20  Identities=15%  Similarity=0.287  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 013689          277 ESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       277 ~L~~EN~~Lraqve~Lrakl  296 (438)
                      .+..+...|+.++.+|..++
T Consensus       917 ~l~~~~~~Le~~l~ele~el  936 (1184)
T 1i84_S          917 RLAAKKQELEEILHEMEARI  936 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444443333

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=83.71  E-value=1.2  Score=33.90  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          265 LKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  301 (438)
Q Consensus       265 ~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~  301 (438)
                      ...+..|..++..|..+|..|+.++..|+..+..+..
T Consensus        21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~   57 (62)
T 1jnm_A           21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ   57 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667777778888999998888888877655443

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=83.66  E-value=1.5  Score=30.94  Aligned_cols=29  Identities=14%  Similarity=0.308  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQK  274 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk  274 (438)
                      ++..||.+|..|..+|+.|..++..|+..
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l   30 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKE   30 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35678888888887777777777666543

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=83.41  E-value=0.099  Score=43.74  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHH
Q 013689          221 VDDKRARRMLSNRESARRSRRRKQA  245 (438)
Q Consensus       221 ~d~KR~RR~lsNRESARRSR~RKq~  245 (438)
                      .-.|.+||..+||.+|+++|+||..
T Consensus        63 ~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           63 ALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3578899999999999999999853

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=83.34  E-value=5.3  Score=34.89  Aligned_cols=35  Identities=31%  Similarity=0.373  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhc
Q 013689          282 NRILKADIETLRAKVKMAEETVKRVTGLNPLLLAR  316 (438)
Q Consensus       282 N~~Lraqve~Lrakl~maE~~v~Rl~~ln~~l~~~  316 (438)
                      =..|+-+|.+|.++|+.++..|.|+..-|..++..
T Consensus        73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r  107 (121)
T 3mq7_A           73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVR  107 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence            44455666666666666666677777777665554

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=83.33  E-value=11  Score=32.18  Aligned_cols=13  Identities=38%  Similarity=0.621  Sum_probs=9.1

Q ss_pred             chHHHHHHHHHHh
Q 013689          220 SVDDKRARRMLSN  232 (438)
Q Consensus       220 ~~d~KR~RR~lsN  232 (438)
                      ..++|=+|-|++|
T Consensus         6 EvEEKyrKAMVsn   18 (103)
T 4h22_A            6 EVEEKYKKAMVSN   18 (103)
T ss_dssp             --CCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3467778889998

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=83.06  E-value=11  Score=32.48  Aligned_cols=32  Identities=16%  Similarity=0.013  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          254 AGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL  285 (438)
Q Consensus       254 V~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L  285 (438)
                      +..|+.|...|+.....+..++..|+..|.-|
T Consensus        37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL   68 (111)
T 2v66_B           37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDL   68 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            33444444444444444444444444444444

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=82.95  E-value=10  Score=30.94  Aligned_cols=42  Identities=12%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKAD  288 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraq  288 (438)
                      +-+|..++..|+.|...|+-+++.+..++..+....+.+-.+
T Consensus        22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d   63 (83)
T 2xdj_A           22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ   63 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555554444444444444433333

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=82.39  E-value=16  Score=38.27  Aligned_cols=43  Identities=16%  Similarity=0.040  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhccCCCCCCCCC
Q 013689          284 ILKADIETLRAKVKMAEETVKRVT-GLNPLLLARSDVPGVGMPL  326 (438)
Q Consensus       284 ~Lraqve~Lrakl~maE~~v~Rl~-~ln~~l~~~~~~~~~~~p~  326 (438)
                      .|++++.+|..+++.+++.++.+. .++.++..+.+++.-..|.
T Consensus        75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~  118 (485)
T 3qne_A           75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVD  118 (485)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence            344555555555555444444332 2333343334433334443

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=82.37  E-value=1.9  Score=30.03  Aligned_cols=28  Identities=4%  Similarity=0.077  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQ  273 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~q  273 (438)
                      ++..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4567777777777777777666665543

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=82.23  E-value=3.4  Score=33.26  Aligned_cols=24  Identities=29%  Similarity=0.291  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLT  269 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~  269 (438)
                      ++.+||.++..++.-...|...+.
T Consensus        15 Ri~~LE~klAfqE~tIeeLn~~v~   38 (78)
T 3efg_A           15 RLVELETRLSFQEQALTELSEALA   38 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666555555555544444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.20  E-value=6  Score=50.03  Aligned_cols=58  Identities=12%  Similarity=0.229  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013689          251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVKRVTG  308 (438)
Q Consensus       251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~Rl~~  308 (438)
                      +.++..++.+...|..++..|+.+|..+..|-..|+.+++..+.||..|+..+.-|.+
T Consensus      2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~ 2084 (3245)
T 3vkg_A         2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNS 2084 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3344445555556666666777777777777777777777777777777766655533

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=81.89  E-value=4.3  Score=41.25  Aligned_cols=40  Identities=15%  Similarity=0.256  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRIL  285 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~L  285 (438)
                      .+++|+.++..|+.+...|..++..+.+++...+..-+.|
T Consensus        11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l   50 (403)
T 4etp_A           11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL   50 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444333333333333

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=81.50  E-value=3.7  Score=31.63  Aligned_cols=36  Identities=17%  Similarity=0.138  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          251 ETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILK  286 (438)
Q Consensus       251 E~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lr  286 (438)
                      |.++..|+.-|-+|..+++.|+.++...+.|+.+|+
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~   45 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN   45 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777777776666666666655

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=81.30  E-value=17  Score=34.28  Aligned_cols=57  Identities=12%  Similarity=0.165  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETV  303 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v  303 (438)
                      ++.|+.++..++.++..|..++..+..+...+..+=..+++++..++..+..++..+
T Consensus        92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~  148 (256)
T 3na7_A           92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLV  148 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555555555555555555555555555555444333

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=80.96  E-value=16  Score=29.67  Aligned_cols=61  Identities=15%  Similarity=0.206  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          241 RRKQAHLNELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEE  301 (438)
Q Consensus       241 ~RKq~~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~  301 (438)
                      +|=++.+..-..++..|+.-...|..--..+...+..|..|-..|...++.|+.|.+.++.
T Consensus        14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~   74 (78)
T 3iv1_A           14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334667777778888888888888777778888888889999999999999888877654

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=80.59  E-value=2.5  Score=29.36  Aligned_cols=27  Identities=7%  Similarity=0.187  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          247 LNELETQAGQLRAEHSSLLKGLTDVNQ  273 (438)
Q Consensus       247 leeLE~qV~~Le~EN~~L~~el~~l~q  273 (438)
                      +..||.+|+.|-.+|..|..++..|+.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~   28 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKX   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            456777777777777777666665543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=80.38  E-value=9.8  Score=43.40  Aligned_cols=25  Identities=16%  Similarity=0.060  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          278 SAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       278 L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      +..+-..|..++..|+.++..+++.
T Consensus       911 ~e~~l~~l~~~~~~Le~~l~ele~e  935 (1184)
T 1i84_S          911 AEEMRVRLAAKKQELEEILHEMEAR  935 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444433

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=80.28  E-value=8  Score=33.78  Aligned_cols=47  Identities=17%  Similarity=0.284  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          249 ELETQAGQLRAEHSSLLKGLTDVNQKYDESAVNNRILKADIETLRAK  295 (438)
Q Consensus       249 eLE~qV~~Le~EN~~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrak  295 (438)
                      .|+.+..+-....+.|..+|..|++++..+..|=.+||.+.+.|..+
T Consensus        61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r  107 (121)
T 3mq7_A           61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR  107 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence            34444444344455555555555555556666656666665555433

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=80.26  E-value=2.1  Score=33.11  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          265 LKGLTDVNQKYDESAVNNRILKADIETLRAKV  296 (438)
Q Consensus       265 ~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl  296 (438)
                      ...+..|..+...|..+|..|+.++..|+..|
T Consensus        29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777788899999999999987665

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=80.21  E-value=5.5  Score=29.02  Aligned_cols=34  Identities=15%  Similarity=0.288  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          269 TDVNQKYDESAVNNRILKADIETLRAKVKMAEET  302 (438)
Q Consensus       269 ~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~  302 (438)
                      .+|..+...++..|.+|...+.+|...-.|+..+
T Consensus         6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv   39 (42)
T 2oqq_A            6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI   39 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3444444455555555555555555555554444

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=80.13  E-value=10  Score=40.37  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          263 SLLKGLTDVNQKYDESAVNNRILKADIETLRAKVKMAEETVK  304 (438)
Q Consensus       263 ~L~~el~~l~qk~~~L~~EN~~Lraqve~Lrakl~maE~~v~  304 (438)
                      .|+++++.|++++..-...=++|+.-|++++.+++.+|-.|+
T Consensus       114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId  155 (562)
T 3ghg_A          114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577777777777777777778889999999988888885554

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=80.11  E-value=2.4  Score=29.60  Aligned_cols=28  Identities=11%  Similarity=0.269  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQ  273 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~q  273 (438)
                      ++..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~   29 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4567888888877777777777766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	438
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	90.04
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	85.69

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.04  E-value=0.069  Score=41.26  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 013689          222 DDKRARRMLSNRESARRSRRRKQAHLNE  249 (438)
Q Consensus       222 d~KR~RR~lsNRESARRSR~RKq~~lee  249 (438)
                      -.+-+||.=+|+.+|+++|+||....++
T Consensus        46 lirDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          46 LIRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            3677899999999999999999877654

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=85.69  E-value=6.5  Score=30.51  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013689          246 HLNELETQAGQLRAEHSSLLKGLTDVNQKYDES-AVNNRILKADIETLRAKVKMAEETVKRV  306 (438)
Q Consensus       246 ~leeLE~qV~~Le~EN~~L~~el~~l~qk~~~L-~~EN~~Lraqve~Lrakl~maE~~v~Rl  306 (438)
                      .+-+|..+...|..+-..|+.+...+..++..+ ..+...|++++..|..+++.++...+.+
T Consensus        29 ~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~   90 (110)
T d1seta1          29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREK   90 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444443333211 1123345555555555555555444443