Citrus Sinensis ID: 013690
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 438 | 2.2.26 [Sep-21-2011] | |||||||
| O65717 | 716 | Cyclic nucleotide-gated i | yes | no | 0.942 | 0.576 | 0.460 | 1e-104 | |
| Q9LNJ0 | 711 | Probable cyclic nucleotid | no | no | 0.936 | 0.576 | 0.425 | 9e-90 | |
| Q9LD40 | 696 | Putative cyclic nucleotid | no | no | 0.929 | 0.584 | 0.415 | 6e-86 | |
| Q9SKD7 | 706 | Probable cyclic nucleotid | no | no | 0.933 | 0.579 | 0.417 | 2e-83 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.952 | 0.558 | 0.392 | 9e-83 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.954 | 0.570 | 0.380 | 9e-81 | |
| Q8RWS9 | 717 | Probable cyclic nucleotid | no | no | 0.938 | 0.573 | 0.375 | 2e-76 | |
| Q9SJA4 | 726 | Probable cyclic nucleotid | no | no | 0.926 | 0.559 | 0.381 | 2e-75 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.942 | 0.559 | 0.367 | 3e-75 | |
| Q9SL29 | 678 | Putative cyclic nucleotid | no | no | 0.938 | 0.606 | 0.379 | 3e-74 |
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/439 (46%), Positives = 274/439 (62%), Gaps = 26/439 (5%)
Query: 1 MSGLKILSGMMLLKYSVLIQFVLRMIRIYPW------TLGKLGEATWAIAAFNLLLYVLA 54
M G L+ +LK+ V Q++ R IRIYP T G L E WA AAFNL LY+LA
Sbjct: 210 MRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLA 269
Query: 55 SHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDC-YDSLGNYEFLNEFCPTKPQNT 113
SHVFGA WY +IER+T CWK+AC NN C C ++ G FLNE CP + NT
Sbjct: 270 SHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTPNT 329
Query: 114 TILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVT 173
T+ DFGIF ALQSG+VE DFPQKF +CF WGL+NLS GQNL+TS+ WE F + ++
Sbjct: 330 TLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFIS 389
Query: 174 ISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIW 233
I+GLVL FLIGN+Q YLQ+ TR +EM ++ ++ + M + L +++++++ Y++Y W
Sbjct: 390 IAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKW 449
Query: 234 RKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFK 293
++ +D E+ LS LPK+LRR+IKR LCL LL V F+ +DE++LDALCD ++P Y +
Sbjct: 450 QETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTE 509
Query: 294 HTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353
++IV EGDP+ EMLFI++GK+ T+ G N+ ++L GDF G
Sbjct: 510 ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNS-------------EYLGAGDFCG 556
Query: 354 EELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIEHQVASSTEFNSNYSV 413
EEL+ W L S SN+P+STR+V+AL VEAF L A DLK V + + S + +
Sbjct: 557 EELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRY 616
Query: 414 KD------AARIIQLAWRR 426
AA IQ AWRR
Sbjct: 617 YSQQWKTWAACFIQAAWRR 635
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Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 | Back alignment and function description |
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| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 438 | ||||||
| 15238657 | 716 | cyclic nucleotide-gated ion channel 1 [A | 0.942 | 0.576 | 0.460 | 1e-102 | |
| 297796139 | 716 | hypothetical protein ARALYDRAFT_918383 [ | 0.942 | 0.576 | 0.455 | 1e-102 | |
| 356551532 | 718 | PREDICTED: cyclic nucleotide-gated ion c | 0.968 | 0.590 | 0.440 | 1e-101 | |
| 255545024 | 838 | Cyclic nucleotide-gated ion channel, put | 0.963 | 0.503 | 0.451 | 1e-101 | |
| 224135235 | 708 | predicted protein [Populus trichocarpa] | 0.963 | 0.596 | 0.446 | 1e-101 | |
| 224118210 | 709 | predicted protein [Populus trichocarpa] | 0.963 | 0.595 | 0.445 | 1e-100 | |
| 225462733 | 709 | PREDICTED: cyclic nucleotide-gated ion c | 0.938 | 0.579 | 0.445 | 1e-100 | |
| 356516029 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.965 | 0.591 | 0.447 | 3e-99 | |
| 356509281 | 715 | PREDICTED: cyclic nucleotide-gated ion c | 0.965 | 0.591 | 0.445 | 1e-98 | |
| 449456377 | 713 | PREDICTED: cyclic nucleotide-gated ion c | 0.936 | 0.575 | 0.448 | 2e-96 |
| >gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 202/439 (46%), Positives = 274/439 (62%), Gaps = 26/439 (5%)
Query: 1 MSGLKILSGMMLLKYSVLIQFVLRMIRIYPW------TLGKLGEATWAIAAFNLLLYVLA 54
M G L+ +LK+ V Q++ R IRIYP T G L E WA AAFNL LY+LA
Sbjct: 210 MRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLA 269
Query: 55 SHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDC-YDSLGNYEFLNEFCPTKPQNT 113
SHVFGA WY +IER+T CWK+AC NN C C ++ G FLNE CP + NT
Sbjct: 270 SHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTPNT 329
Query: 114 TILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVT 173
T+ DFGIF ALQSG+VE DFPQKF +CF WGL+NLS GQNL+TS+ WE F + ++
Sbjct: 330 TLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFIS 389
Query: 174 ISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIW 233
I+GLVL FLIGN+Q YLQ+ TR +EM ++ ++ + M + L +++++++ Y++Y W
Sbjct: 390 IAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKW 449
Query: 234 RKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFK 293
++ +D E+ LS LPK+LRR+IKR LCL LL V F+ +DE++LDALCD ++P Y +
Sbjct: 450 QETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTE 509
Query: 294 HTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353
++IV EGDP+ EMLFI++GK+ T+ G N+ ++L GDF G
Sbjct: 510 ESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNS-------------EYLGAGDFCG 556
Query: 354 EELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIEHQVASSTEFNSNYSV 413
EEL+ W L S SN+P+STR+V+AL VEAF L A DLK V + + S + +
Sbjct: 557 EELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRY 616
Query: 414 KD------AARIIQLAWRR 426
AA IQ AWRR
Sbjct: 617 YSQQWKTWAACFIQAAWRR 635
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449456377|ref|XP_004145926.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 438 | ||||||
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.965 | 0.590 | 0.46 | 2.9e-96 | |
| TAIR|locus:2125206 | 696 | CNGC13 "cyclic nucleotide-gate | 0.926 | 0.583 | 0.421 | 2.2e-80 | |
| TAIR|locus:2039084 | 706 | CNGC3 "cyclic nucleotide gated | 0.933 | 0.579 | 0.424 | 1.4e-78 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.958 | 0.562 | 0.399 | 1.3e-77 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.954 | 0.570 | 0.387 | 7.3e-75 | |
| TAIR|locus:2174448 | 717 | CNGC5 "cyclic nucleotide gated | 0.958 | 0.585 | 0.382 | 1.1e-71 | |
| TAIR|locus:2046703 | 726 | CNGC14 "cyclic nucleotide-gate | 0.926 | 0.559 | 0.390 | 1.6e-70 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.942 | 0.559 | 0.379 | 1.1e-69 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.913 | 0.589 | 0.400 | 1.8e-69 | |
| TAIR|locus:2039099 | 621 | CNGC11 "cyclic nucleotide-gate | 0.933 | 0.658 | 0.389 | 8e-69 |
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
Identities = 207/450 (46%), Positives = 283/450 (62%)
Query: 1 MSGLKILSGMMLLKYSVLIQFVLRMIRIYPW------TLGKLGEATWAIAAFNLLLYVLA 54
M G L+ +LK+ V Q++ R IRIYP T G L E WA AAFNL LY+LA
Sbjct: 210 MRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLA 269
Query: 55 SHVFGALWYFSAIERQTECWKKACLFNNTGCTRGSFDCY-DSLGNYEFLNEFCPTKPQNT 113
SHVFGA WY +IER+T CWK+AC NN C C ++ G FLNE CP + NT
Sbjct: 270 SHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTPNT 329
Query: 114 TILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSNAWENFFVILVT 173
T+ DFGIF ALQSG+VE DFPQKF +CF WGL+NLS GQNL+TS+ WE F + ++
Sbjct: 330 TLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFIS 389
Query: 174 ISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIW 233
I+GLVL FLIGN+Q YLQ+ TR +EM ++ ++ + M + L +++++++ Y++Y W
Sbjct: 390 IAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKW 449
Query: 234 RKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFK 293
++ +D E+ LS LPK+LRR+IKR LCL LL V F+ +DE++LDALCD ++P Y +
Sbjct: 450 QETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTE 509
Query: 294 HTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWG 353
++IV EGDP+ EMLFI++GK+ T TNG + F++ ++L GDF G
Sbjct: 510 ESYIVREGDPVDEMLFIMRGKLLTIT----TNGG--------RTGFLN-SEYLGAGDFCG 556
Query: 354 EELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIEHQVASSTEFNSNYSV 413
EEL+ W L S SN+P+STR+V+AL VEAF L A DLK V + + S + +
Sbjct: 557 EELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSKQLRHTFRY 616
Query: 414 KD------AARIIQLAWRRRYSSRNLLKSV 437
AA IQ AWRR Y + L +S+
Sbjct: 617 YSQQWKTWAACFIQAAWRR-YIKKKLEESL 645
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| TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 438 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 9e-08 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 5e-04 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-08
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 23/129 (17%)
Query: 271 FKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANT 330
F LD+E L+ L D ++ + I+ +GDP + ++ G + +Y E
Sbjct: 2 FSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDE-------- 53
Query: 331 SHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAH 390
D + I L GD +GE + L N P S +V+AL + E L
Sbjct: 54 ----DGREQIVG--FLGPGDLFGELAL--------LGNGPRSA-TVRALTDSELLVLPRS 98
Query: 391 DLKHVFIEH 399
D + + E+
Sbjct: 99 DFRRLLQEY 107
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In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 438 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.46 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.44 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.39 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.36 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.34 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.29 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.29 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.29 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 99.28 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.28 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.28 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.27 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.21 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.2 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.06 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.05 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.05 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 98.96 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 98.96 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 98.56 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 98.47 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.46 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 98.38 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.16 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.94 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 97.9 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.9 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.81 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.62 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 97.27 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.21 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.96 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.87 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 96.7 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 96.26 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 95.9 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 95.8 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 94.35 | |
| COG4709 | 195 | Predicted membrane protein [Function unknown] | 91.14 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 88.08 | |
| PF08006 | 181 | DUF1700: Protein of unknown function (DUF1700); In | 84.93 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 84.07 | |
| PF00612 | 21 | IQ: IQ calmodulin-binding motif; InterPro: IPR0000 | 81.46 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-72 Score=583.26 Aligned_cols=368 Identities=37% Similarity=0.609 Sum_probs=330.4
Q ss_pred HhhHHHHHHHHHhhhhHhhhhcC------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHhhccCC
Q 013690 9 GMMLLKYSVLIQFVLRMIRIYPW------TLGKLGEATWAIAAFNLLLYVLASHVFGALWYFSAIERQTECWKKACLFNN 82 (438)
Q Consensus 9 ~~~~l~~~~~~~~l~rl~r~~~l------~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~ 82 (438)
.++.|..++++||||||.|++++ ..+++.+++|+.++++|++++|++||.||+||+||+++...||.+
T Consensus 193 ~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~------ 266 (727)
T KOG0498|consen 193 ESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRK------ 266 (727)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc------
Confidence 34489999999999999999999 778899999999999999999999999999999998886555551
Q ss_pred CCCCCcceeeCCCCCccccccccCCCCCCCCCCCccchhhhhhhcCcccCCChhHHHHHHHHHHHHhhcccCCcccccCC
Q 013690 83 TGCTRGSFDCYDSLGNYEFLNEFCPTKPQNTTILDFGIFQHALQSGIVEVPDFPQKFLHCFRWGLRNLSCFGQNLQTSSN 162 (438)
Q Consensus 83 ~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yi~slYwa~~tmtTvGyGdi~p~~ 162 (438)
.+|+...+......+..|+||+ .+++.+|++|+||+++||||+|||+++|+|
T Consensus 267 ----------------~tw~~~l~~~~~~~~~~~~fg~------------~s~~~kY~~aLyw~l~tLstvG~g~~~s~~ 318 (727)
T KOG0498|consen 267 ----------------ATWLGSLGRLLSCYNLSFTFGI------------YSLALKYVYALYWGLSTLSTVGYGLVHANN 318 (727)
T ss_pred ----------------cccccccccccccCcccccccc------------hhHHHHHHHHHHHHhhHhhhccCCccCCCC
Confidence 1677764311112344467774 556679999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHH
Q 013690 163 AWENFFVILVTISGLVLMLFLIGNIQIYLQTKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVE 242 (438)
Q Consensus 163 ~~E~~~~i~~~l~g~~~fayiig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~ 242 (438)
..|++|+|++|++|.++||++||||+++++....+.++|+.++.++++||++|++|++||+||++|++|+|...+|+||+
T Consensus 319 ~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee 398 (727)
T KOG0498|consen 319 MGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEE 398 (727)
T ss_pred cHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeec
Q 013690 243 SSLSILPKELRRNIKRELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKE 322 (438)
Q Consensus 243 ~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~ 322 (438)
++|+.||+.||++|..+++.++++++|+|++++++++.+|+.++++..|+|||+|++|||+.++||||++|.+++..
T Consensus 399 ~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~--- 475 (727)
T KOG0498|consen 399 ELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESIT--- 475 (727)
T ss_pred HHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEE---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC-CcccccccCcccccccceeccCCCeechhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh---
Q 013690 323 RTNG-SANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE--- 398 (438)
Q Consensus 323 ~~~g-~~~~~~~~~~~~~~~~~~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~--- 398 (438)
.+| +... ...|++||+|||.-+.++++ . |+++||+|++.|+++.|+++||..++++
T Consensus 476 -~~~g~~~~------------~~~L~~Gd~~GeEl~~~~~~------~-p~t~TVralt~~el~~L~~~dL~~V~~~f~~ 535 (727)
T KOG0498|consen 476 -TDGGGFFV------------VAILGPGDFFGEELLTWCLD------L-PQTRTVRALTYCELFRLSADDLKEVLQQFRR 535 (727)
T ss_pred -ccCCceEE------------EEEecCCCccchHHHHHHhc------C-CCCceeehhhhhhHHhccHHHHHHHHHHhHH
Confidence 443 3333 89999999999665555553 1 3578999999999999999999999999
Q ss_pred ---hhHHhHhhhccccchhHHHHHHHHHHHHHHHhhhhh
Q 013690 399 ---HQVASSTEFNSNYSVKDAARIIQLAWRRRYSSRNLL 434 (438)
Q Consensus 399 ---p~l~~~~r~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (438)
..+++.+++++.+||.|+++.||.||| |+.+|...
T Consensus 536 ~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r-~~~~~~~~ 573 (727)
T KOG0498|consen 536 LGSKFLQHTFRYYSHLWRTWAACFIQAAWR-RHIKRKGE 573 (727)
T ss_pred HHHHHHHhHHHHhhhhhhhhhhhhHHHHHH-HHHHhhcc
Confidence 678889999999999999999999999 77776543
|
|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4709 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 438 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 1e-22 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 6e-37
Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 28/201 (13%)
Query: 199 KEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKR 258
++ +++++ E+M +KL ++ ++ Y Y +R D + + +R+++
Sbjct: 8 RQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVAN 66
Query: 259 ELCLDLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIY 318
C DL+ +V F D + + ++ + +++ EG M FI QG + I
Sbjct: 67 YNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDII 126
Query: 319 TSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQA 378
D L+DG ++GE + R SV+
Sbjct: 127 M--------------SDGVIAT----SLSDGSYFGEICLLTRER---------RVASVKC 159
Query: 379 LKNVEAFGLMAHDLKHVFIEH 399
F L V E
Sbjct: 160 ETYCTLFSLSVQHFNQVLDEF 180
|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 438 | |||
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 100.0 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 100.0 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 100.0 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.97 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.81 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.75 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.7 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.7 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.7 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.7 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.68 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.68 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.66 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.66 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.66 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.65 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.64 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.63 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.63 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.63 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.62 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.6 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.6 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.6 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.59 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.59 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.59 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.58 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.58 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.57 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.57 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.56 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.56 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.55 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.54 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.53 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.53 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.52 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.52 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.51 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.5 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.49 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.48 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.48 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.48 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.47 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.47 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.45 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.45 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.45 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.42 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.42 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.38 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.37 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 99.36 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.35 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.34 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.34 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 99.3 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.3 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.25 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 99.15 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.12 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 99.11 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 99.04 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.99 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 98.97 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.93 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.82 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.81 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.75 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.74 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.61 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.59 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 98.51 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 98.09 | |
| 2kxw_B | 27 | Sodium channel protein type 2 subunit alpha; actio | 94.22 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 94.22 | |
| 2l53_B | 31 | CAM, voltage-gated sodium channel type V alpha iso | 94.14 |
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=247.59 Aligned_cols=186 Identities=19% Similarity=0.315 Sum_probs=171.6
Q ss_pred hcCCcHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHHHHHHhccccccc
Q 013690 193 TKATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFK 272 (438)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~ 272 (438)
+++++..+|+++++.+++||+.+++|++||.||++||+|.|+. ++.+++++++.||++||.++..+.+.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 5678899999999999999999999999999999999999974 788999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCee
Q 013690 273 TLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFW 352 (438)
Q Consensus 273 ~~s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~F 352 (438)
+++++++..++..++++.|.|||+|+++||+++.+|||.+|.|+++. .+|. . +..+++|++|
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~----~~g~--~------------~~~l~~G~~f 142 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM----SDGV--I------------ATSLSDGSYF 142 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC----TTSC--E------------EEEECTTCEE
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe----cCCe--E------------EEEecCCCEe
Confidence 99999999999999999999999999999999999999999999998 5665 3 7899999999
Q ss_pred chhHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 353 GEELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 353 Ge~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
|+.+++.+ .+++++++|.++|+++.|++++|.+++++ |.+...+.
T Consensus 143 Ge~~~~~~---------~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~ 188 (198)
T 2ptm_A 143 GEICLLTR---------ERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTME 188 (198)
T ss_dssp SCHHHHHS---------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHcCC---------CccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHH
Confidence 99988742 15788999999999999999999999999 88876554
|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 438 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 5e-13 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 1e-07 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 1e-07 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 1e-06 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 2e-05 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 4e-05 | |
| d1cx4a1 | 136 | b.82.3.2 (A:130-265) Regulatory subunit of Protein | 9e-05 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 2e-04 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 2e-04 | |
| d2p9ba1 | 118 | b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote | 0.002 | |
| d2gaua2 | 142 | b.82.3.2 (A:10-151) Transcriptional regulator PG03 | 0.002 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 63.8 bits (154), Expect = 5e-13
Identities = 50/133 (37%), Positives = 79/133 (59%), Gaps = 13/133 (9%)
Query: 263 DLLKNVKEFKTLDEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKE 322
++ V F+ +DE +LDA+C+ +KP + + +++V EGDP+ EMLFI++G++ T+
Sbjct: 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTD- 64
Query: 323 RTNGSANTSHSRDNSKFISRKDHLADGDFWGEELVAWVLRDRSLSNIPMSTRSVQALKNV 382
+ L +GDF G+EL+ W L +S SN+P STR+V+AL V
Sbjct: 65 ------------GGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEV 112
Query: 383 EAFGLMAHDLKHV 395
EAF L+A +LK V
Sbjct: 113 EAFALIADELKFV 125
|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118 | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 438 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 100.0 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.84 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.76 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.76 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.75 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.75 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.74 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.72 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.71 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.7 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.63 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.62 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.62 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.54 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.54 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.51 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.48 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.43 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.43 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 99.33 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 99.06 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 96.92 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 92.8 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 86.64 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.3e-32 Score=244.42 Aligned_cols=183 Identities=22% Similarity=0.298 Sum_probs=168.6
Q ss_pred CCcHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHhhccHHHHHHHHHHHHHHHhccccccccC
Q 013690 195 ATRPKEMTLRMQEMNEHMPIQKLSRSVQQQLKIYQRYIWRKPDTIDVESSLSILPKELRRNIKRELCLDLLKNVKEFKTL 274 (438)
Q Consensus 195 ~~~~~~~~~~~~~i~~~m~~~~ip~~L~~ri~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~ei~~~~~~~~l~~i~~F~~~ 274 (438)
|+...+|+++|+.+++||+.+++|++|+.||++||+|.|+. +..+++++++.||++||.++..+++.+.++++|+|+++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 35678999999999999999999999999999999999976 77899999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhcceeeeCCCcEEEecCCCCCeEEEEEecEEEEEeeecccCCCcccccccCcccccccceeccCCCeech
Q 013690 275 DEEVLDALCDCVKPAFYFKHTHIVLEGDPIYEMLFIVQGKMWIYTSKERTNGSANTSHSRDNSKFISRKDHLADGDFWGE 354 (438)
Q Consensus 275 s~~~l~~l~~~l~~~~~~pge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~~FGe 354 (438)
++.++..|+..+++..|.|||+|+++||.++.+|||.+|.|++.. . ++. ...+++|++||+
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~----~-~~~--------------~~~l~~G~~fGe 140 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT----K-GNK--------------EMKLSDGSYFGE 140 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC------CCC--------------EEEECTTCEECH
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeec----C-Ccc--------------eeeeccceeeee
Confidence 999999999999999999999999999999999999999999987 2 322 467899999999
Q ss_pred hHHHhhhccCCCCCCCCccceEEEcceEEEEEecHHHHHHHhhh-hhHHhHhh
Q 013690 355 ELVAWVLRDRSLSNIPMSTRSVQALKNVEAFGLMAHDLKHVFIE-HQVASSTE 406 (438)
Q Consensus 355 ~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~-p~l~~~~r 406 (438)
.+++.+. +++++++|.++|+++.|++++|.+++++ |++.+.+.
T Consensus 141 ~~~~~~~---------~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~ 184 (193)
T d1q3ea_ 141 ICLLTRG---------RRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFE 184 (193)
T ss_dssp HHHHHCS---------BCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHH
T ss_pred eeccCCC---------cccccceecCceEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 9998531 5778999999999999999999999999 88887765
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|