Citrus Sinensis ID: 013706

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLGI
Secondary Structure (PSIPRED)
ccccccHHHHHHHccccEEEHHHcccccccccccccccccccccHHHHHHcccHHHHHHHHHccccHHHHHcccccHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEccccccccccccHHHHHHHHHHHHccEEEEEcccccccccccccccHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHcccccccccccEEcccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHccccccHHHHccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEcccccHHHHHHHHccccccHccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcHHHHcccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccHHHHHHccHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccccccEEEEEcHHccHHEccccHHHHHHHHHHHcccEEEEHHHHHHcccccccccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHccccccHccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqmaqtplhvsagYNKAEIVKSLlewpgndkveLEAQnmygetplhmaaKNGCNEAAKLLLAHGAFIeakanngmtplHLSVWYSIRSEDYATVKTLLEYNadcsakdnegktpldhlsngpgsAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGlkvgarrpphmaflgnpgtgkTMVARILGRLLYMVGilptdrvtevqrtdlvgefvghtgpktRRRIKEaeggilfvdeayrlipmqkaddkdYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTkffhfndfnSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRemngglvdpmlVNARENldlrlsfdcldtdeLRTITLEDLEAGLKLLLRLGI
Flexible Loop (DISEMBL)
mqmaqtplhvsagyNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSakdnegktpldhlsngpGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALglkvgarrpphmaflgnpgtgkTMVARILGRLLYMVGILPTDrvtevqrtdlvgefvghtgpktrrrikeaeggilFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRremngglvdpmlVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLGI
Low Complexity Region (SEG)
MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITledleaglklllrlgI
Disordered region (IsUnstruct)
***********AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC*************************LLLW***************************LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE*************GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL**
Disordered Region (DISOPRED)
**MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN******************RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGL*V*ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM******DYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL**
Disordered Region (DISEMBL)
MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLGI
Disordered Region (DISPRO)
***AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL**CSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	438	2.2.26 [Sep-21-2011]
O22034	286	Protein cfxQ homolog OS=C	N/A	no	0.452	0.692	0.408	5e-37
O22025	293	Protein cfxQ homolog OS=C	N/A	no	0.452	0.675	0.403	6e-37
P49826	291	Protein cfxQ homolog OS=O	N/A	no	0.442	0.666	0.409	2e-35
P51228	301	Protein cfxQ homolog OS=P	N/A	no	0.452	0.657	0.412	2e-35
Q9TLY2	301	Protein cfxQ homolog OS=C	N/A	no	0.452	0.657	0.393	1e-34
P95648	309	Protein CbbX OS=Rhodobact	yes	no	0.621	0.880	0.350	2e-34
Q9MS99	305	Protein cfxQ homolog OS=G	N/A	no	0.436	0.626	0.406	3e-34
Q1XDQ9	300	Protein cfxQ homolog OS=P	N/A	no	0.452	0.66	0.398	5e-34
P27643	322	Stage V sporulation prote	yes	no	0.426	0.580	0.388	9e-34
Q04540	317	Protein CbxX, plasmid OS=	yes	no	0.415	0.574	0.416	1e-33

>sp|O22034|CFXQ2_CYACA Protein cfxQ homolog OS=Cyanidium caldarium GN=cfxQ PE=3 SV=1

 Score =  155 bits (392), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 129/208 (62%), Gaps = 10/208 (4%)

Query: 148 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLG 206
           ++ +  +D+L+ EL   +GL  +K ++R+ A  +L+D  R+ LGL   +  P  HM+F G
Sbjct: 12  TQIQQVLDDLDREL---IGLQAVKTRIREIAALLLVDRLRQKLGL--SSSNPGLHMSFTG 66

Query: 207 NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGIL 266
           +PGTGKT VA  +  +LY +G +    +  V R DLVG+++GHT PKT++ +K A GG+L
Sbjct: 67  SPGTGKTTVATKMADILYRLGYIKKGHLITVTRDDLVGQYIGHTAPKTKQVLKNAMGGVL 126

Query: 267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFC 324
           F+DEAY L   +  +++DYG EA+E ++ VM+  +  +V+IFAGY E M R  ASN G  
Sbjct: 127 FIDEAYYL--YRPDNERDYGAEAIEILLQVMENQRDDLVIIFAGYKEKMDRFYASNPGLS 184

Query: 325 RRVTKFFHFNDFNSEELAKILHIKMNNQ 352
            RV    +F D+  EEL  I  I +  Q
Sbjct: 185 SRVANHVNFPDYTPEELLMIGKIMLQEQ 212

Necessary for the expression of RuBisCO.
Cyanidium caldarium (taxid: 2771)

>sp|O22025|CFXQ_CYAME Protein cfxQ homolog OS=Cyanidioschyzon merolae GN=cfxQ PE=3 SV=2

 Score =  155 bits (392), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/208 (40%), Positives = 129/208 (62%), Gaps = 10/208 (4%)

Query: 148 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLG 206
           ++ +  +D+L+ EL   +GL  +K ++R+ A  +L+D  R+ LGL   +  P  HM+F G
Sbjct: 19  TQIQEVLDDLDREL---IGLQTVKTRIREIAALLLVDRLRQKLGL--SSSNPGLHMSFTG 73

Query: 207 NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGIL 266
           +PGTGKT VAR +  +LY +G +    +  V R DLVG+++GHT PKT++ +K A GG+L
Sbjct: 74  SPGTGKTTVARKMADILYRLGYIKKGHLITVTRDDLVGQYIGHTAPKTKQVLKNAMGGVL 133

Query: 267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFC 324
           F+DEAY L   +  +++DYG EA+E ++ VM+  +  +V+IFAGY + M R   SN G  
Sbjct: 134 FIDEAYYL--YRPDNERDYGAEAIEILLQVMENQRDDLVIIFAGYKDKMDRFYTSNPGLA 191

Query: 325 RRVTKFFHFNDFNSEELAKILHIKMNNQ 352
            RV    +F D+  EEL  I  I +  Q
Sbjct: 192 SRVANHVNFPDYTPEELLMIGKIMLQEQ 219

Necessary for the expression of RuBisCO.

Cyanidioschyzon merolae (taxid: 45157)

>sp|P49826|CFXQ_ODOSI Protein cfxQ homolog OS=Odontella sinensis GN=cfxQ PE=3 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 126/205 (61%), Gaps = 11/205 (5%)

Query: 152 AKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP--HMAFLGNPG 209
           AK+  L NE   +VGL  +K ++R+ A  +L+D+ RK LG+  G+   P  HM+F G+PG
Sbjct: 20  AKILNLLNE--ELVGLVPVKSRIREIAALLLIDKLRKNLGITAGS---PGLHMSFTGSPG 74

Query: 210 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 269
           TGKT V   +  +L+ +G +    +  V R DLVG+++GHT PKT+  +K+A GG+LF+D
Sbjct: 75  TGKTTVGLKMSDILFQLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFID 134

Query: 270 EAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRV 327
           EAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY EPM +   SN G   R+
Sbjct: 135 EAYYL--YKPDNERDYGSEAIEILLQVMENQRDDLVVILAGYKEPMDKFYESNPGLSSRI 192

Query: 328 TKFFHFNDFNSEELAKILHIKMNNQ 352
                F D+  EEL KI  + +  Q
Sbjct: 193 ANHIDFPDYTVEELLKISKMMLEEQ 217

Necessary for the expression of RuBisCO.

Odontella sinensis (taxid: 2839)

>sp|P51228|CFXQ_PORPU Protein cfxQ homolog OS=Porphyra purpurea GN=cfxQ PE=3 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 129/206 (62%), Gaps = 8/206 (3%)

Query: 151 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPG 209
           K ++ E+ NEL+  ++GL  +K ++R+ A  +L+D  R+ L L V      HM+F G+PG
Sbjct: 22  KTQIQEVLNELNQELIGLVPVKTRIREIAALLLIDRLRRKLEL-VSGNPGLHMSFTGSPG 80

Query: 210 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 269
           TGKT VA  +  +L+ +G +    +  V R DLVG+++GHT PKT+  +K+A GG+LF+D
Sbjct: 81  TGKTTVAMKMADILHRLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFID 140

Query: 270 EAYRLIPMQKADD-KDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRR 326
           EAY L    KAD+ +DYG EA+E ++ VM+  +  +VVIFAGY + M++   SN G   R
Sbjct: 141 EAYYLY---KADNERDYGSEAIEILLQVMENQRNDLVVIFAGYKDRMEKFYESNPGLSSR 197

Query: 327 VTKFFHFNDFNSEELAKILHIKMNNQ 352
           V     F D+ SEEL +I  + +  Q
Sbjct: 198 VANHVDFPDYTSEELLQIAKMMIEEQ 223

Necessary for the expression of RuBisCO.

Porphyra purpurea (taxid: 2787)

>sp|Q9TLY2|CFXQ1_CYACA Protein cfxQ homolog OS=Cyanidium caldarium GN=cfxQ PE=3 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 127/206 (61%), Gaps = 8/206 (3%)

Query: 151 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLGNP 208
           K K+ E+ ++L+  ++GL  +K ++R+ A  +L+D  R+ +GL   +  P  HM+F G P
Sbjct: 25  KTKIQEVLDDLNQELIGLKPVKNRIREIAALLLVDRLRQKVGL--SSSNPGLHMSFTGPP 82

Query: 209 GTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFV 268
           GTGKT VA  +  +LY +  +    +  V R DLVG+++GHT PKT+  +K+A GG+LF+
Sbjct: 83  GTGKTTVATKMADILYKLNYIKKGHLVTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFI 142

Query: 269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRR 326
           DEAY L   +  +++DYG EA+E ++ VM+  +  +V+IFAGY E M +  ASN G   R
Sbjct: 143 DEAYYL--YKPDNERDYGSEAIEILLQVMENQREDLVIIFAGYKEKMDKFYASNPGLASR 200

Query: 327 VTKFFHFNDFNSEELAKILHIKMNNQ 352
           V     F ++  EEL KI  + +  Q
Sbjct: 201 VANHVDFPEYRPEELLKIAEMMLQEQ 226

Necessary for the expression of RuBisCO.

Cyanidium caldarium (taxid: 2771)

>sp|P95648|CBBX_RHOSH Protein CbbX OS=Rhodobacter sphaeroides GN=cbbX PE=1 SV=1

 Score =  147 bits (370), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 154/291 (52%), Gaps = 19/291 (6%)

Query: 142 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 200
           RA    S  K  ++EL+ EL   +GL  +K ++R+ A  +L++  R+ LGL   A   P 
Sbjct: 14  RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67

Query: 201 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
            HM+F GNPGTGKT VA  +  LL+ +G +    +  V R DLVG+++GHT PKT+  +K
Sbjct: 68  LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127

Query: 260 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 317
            A GG+LF+DEAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY++ M+   
Sbjct: 128 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185

Query: 318 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 377
            SN GF  R+     F D++ EEL +I    +++Q      Y     +  ++ A   L  
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN-----YQMTPEAETALRAYIGLRR 240

Query: 378 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 428
            +      R +   L    L  A  N     S   LD   L T+  ED+ A
Sbjct: 241 NQPHFANARSIRNALDRARLRQA--NRLFTASSGPLDARALSTMAEEDIRA 289

Seems to be necessary for the expression of RuBisCO.

Rhodobacter sphaeroides (taxid: 1063)

>sp|Q9MS99|CFXQ_GALSU Protein cfxQ homolog OS=Galdieria sulphuraria GN=cfxQ PE=3 SV=1

 Score =  146 bits (369), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/197 (40%), Positives = 124/197 (62%), Gaps = 6/197 (3%)

Query: 151 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPG 209
           K K+ E+ N+L   ++GL  +K ++++ A  +L+D+ R  L L   A    HM+F G+PG
Sbjct: 28  KTKIQEVLNQLDKELIGLTPVKNRIKEIAALLLIDKLRIKLNLP-QANPGLHMSFTGSPG 86

Query: 210 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 269
           TGKT VA  +  +LY++G +    +  V R DLVG+++GHT PKT+  +K A GG+LF+D
Sbjct: 87  TGKTTVATKMADILYLLGYIRKGHLLTVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFID 146

Query: 270 EAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRV 327
           EAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY + M+R   SN G   R+
Sbjct: 147 EAYYL--YKPDNERDYGSEAIEILLQVMENQRNDLVVILAGYKDKMERFYQSNPGLSSRI 204

Query: 328 TKFFHFNDFNSEELAKI 344
           T    F D+ +EEL +I
Sbjct: 205 TNHVDFPDYTAEELLEI 221

Necessary for the expression of RuBisCO.

Galdieria sulphuraria (taxid: 130081)

>sp|Q1XDQ9|CFXQ_PORYE Protein cfxQ homolog OS=Porphyra yezoensis GN=cfxQ PE=3 SV=1

 Score =  145 bits (366), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 128/206 (62%), Gaps = 8/206 (3%)

Query: 151 KAKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPG 209
           + ++ E+ NEL+  ++GL  +K ++R+ A  +L+D  R+ L L V      HM+F G+PG
Sbjct: 21  RTQIQEVLNELNQELIGLVPVKTRIREIAALLLIDRLRRKLEL-VSGNPGLHMSFTGSPG 79

Query: 210 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 269
           TGKT VA  +  +L+ +G +    +  V R DLVG+++GHT PKT+  +K+A GG+LF+D
Sbjct: 80  TGKTTVAMKMADILHRLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFID 139

Query: 270 EAYRLIPMQKADD-KDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRR 326
           EAY L    KAD+ +DY  EA+E ++ VM+  +  +VVIFAGY + M++   SN G   R
Sbjct: 140 EAYYLY---KADNERDYDSEAIEILLQVMENQRNDLVVIFAGYKDRMEKFYESNPGLSSR 196

Query: 327 VTKFFHFNDFNSEELAKILHIKMNNQ 352
           V     F D+ S+EL +I  + +  Q
Sbjct: 197 VANHVDFPDYTSDELLQIAKMMIEEQ 222

Necessary for the expression of RuBisCO.

Porphyra yezoensis (taxid: 2788)

>sp|P27643|SP5K_BACSU Stage V sporulation protein K OS=Bacillus subtilis (strain 168) GN=spoVK PE=2 SV=3

 Score =  144 bits (364), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 121/193 (62%), Gaps = 6/193 (3%)

Query: 154 MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKT 213
           + E+E E+S +VG+ E+K  +++    + ++++R   GLKVG ++  HM F GNPGTGKT
Sbjct: 48  LKEIEKEMSALVGMEEMKRNIKEIYAWIFVNQKRAEQGLKVG-KQALHMMFKGNPGTGKT 106

Query: 214 MVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYR 273
            VAR++G+L + + +L    + E +R DLVGE++GHT  KTR  IK++ GGILF+DEAY 
Sbjct: 107 TVARLIGKLFFEMNVLSKGHLIEAERADLVGEYIGHTAQKTRDLIKKSLGGILFIDEAYS 166

Query: 274 LIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRVTKFF 331
           L    +  +KD+G EA++ ++  M+  +   ++I AGYS  M   ++ N G   R     
Sbjct: 167 L---ARGGEKDFGKEAIDTLVKHMEDKQHEFILILAGYSREMDHFLSLNPGLQSRFPISI 223

Query: 332 HFNDFNSEELAKI 344
            F D++  +L +I
Sbjct: 224 DFPDYSVTQLMEI 236

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q04540|CBXXP_CUPNH Protein CbxX, plasmid OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbxXP PE=3 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 118/192 (61%), Gaps = 10/192 (5%)

Query: 156 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLGNPGTGKTM 214
           +L+ EL   +GL  +K ++R  A  +L+D+ R A G   GA  P  HM F GNPGTGKT 
Sbjct: 39  QLDREL---IGLKPVKARIRDIAALLLVDKLRAARGFSAGA--PSLHMCFTGNPGTGKTT 93

Query: 215 VARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRL 274
           VA  + ++L+ +G +    +  V R DLVG+++GHT PKT+  +K+A GG+LF+DEAY L
Sbjct: 94  VAMRMAQILHQLGYVRRGHLVAVTRDDLVGQYIGHTAPKTKEILKKALGGVLFIDEAYYL 153

Query: 275 IPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRVTKFFH 332
              +  +++DYG EA+E ++ VM+  +  +VVI AGY + M R   SN G   RV     
Sbjct: 154 --YRPENERDYGQEAIEILLQVMENNRDDLVVILAGYKDRMDRFFESNPGMSSRVAHHVD 211

Query: 333 FNDFNSEELAKI 344
           F D+  +EL +I
Sbjct: 212 FPDYQLDELRQI 223

Seems to be necessary for the expression of RuBisCO.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
255546479	481	Protein cbxX, chromosomal, putative [Ric	0.984	0.896	0.870	0.0
225445236	484	PREDICTED: caseinolytic peptidase B prot	0.984	0.890	0.853	0.0
356531267	484	PREDICTED: protein CbxX, chromosomal-lik	0.984	0.890	0.837	0.0
356520543	480	PREDICTED: protein CbxX, chromosomal-lik	0.984	0.897	0.842	0.0
224119764	478	predicted protein [Populus trichocarpa]	0.984	0.901	0.844	0.0
357500765	479	Ankyrin repeat domain-containing protein	0.984	0.899	0.837	0.0
224143544	477	predicted protein [Populus trichocarpa]	0.981	0.901	0.832	0.0
449459838	479	PREDICTED: ESX-1 secretion system protei	0.984	0.899	0.830	0.0
9294047	468	unnamed protein product [Arabidopsis tha	0.984	0.920	0.800	0.0
18404228	481	AAA-type ATPase family protein / ankyrin	0.984	0.896	0.800	0.0

>gi|255546479|ref|XP_002514299.1| Protein cbxX, chromosomal, putative [Ricinus communis] gi|223546755|gb|EEF48253.1| Protein cbxX, chromosomal, putative [Ricinus communis]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/431 (87%), Positives = 407/431 (94%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           MAQTPLHVSAG N+AEIVK+LLEW G +KVELEA+NMYGETPLHMAAKNGCNEAA+LLLA
Sbjct: 49  MAQTPLHVSAGNNRAEIVKTLLEWQGPEKVELEAKNMYGETPLHMAAKNGCNEAARLLLA 108

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
           HGAF+E+KANNGMTPLHL+VWYSIRS+D++TVKTLLEYNADCSAKDNEG TP++HLS GP
Sbjct: 109 HGAFVESKANNGMTPLHLAVWYSIRSDDFSTVKTLLEYNADCSAKDNEGMTPMNHLSRGP 168

Query: 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
           GS KLR+LL WH +EQRKRRALEACSETKAKM+ELEN LSNIVGLHELKIQLRKWAKGML
Sbjct: 169 GSEKLRQLLQWHIDEQRKRRALEACSETKAKMEELENALSNIVGLHELKIQLRKWAKGML 228

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
           LDERR ALGLKVG RRPPHMAFLGNPGTGKTMVARILGRLL++VGILPTDRVTEVQRTDL
Sbjct: 229 LDERRMALGLKVGVRRPPHMAFLGNPGTGKTMVARILGRLLHLVGILPTDRVTEVQRTDL 288

Query: 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
           VGEFVGHTGPKTR++IKEAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GKV
Sbjct: 289 VGEFVGHTGPKTRKKIKEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDSGKV 348

Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
           VVIFAGYS+PMKRVIASNEGFCRRVTKFF F+DF  E+LAKI+HIKMNNQ ED LLYGF 
Sbjct: 349 VVIFAGYSKPMKRVIASNEGFCRRVTKFFQFDDFTPEDLAKIIHIKMNNQEEDGLLYGFN 408

Query: 363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422
           LHS CSM+AIA LIE++TTEKQR+EMNGGL D MLVNARENLD RL FDC+DT+ELRTIT
Sbjct: 409 LHSKCSMEAIAKLIERKTTEKQRKEMNGGLADTMLVNARENLDSRLDFDCIDTEELRTIT 468

Query: 423 LEDLEAGLKLL 433
           LEDLEAGL+LL
Sbjct: 469 LEDLEAGLRLL 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445236|ref|XP_002280965.1| PREDICTED: caseinolytic peptidase B protein homolog [Vitis vinifera] gi|297738825|emb|CBI28070.3| unnamed protein product [Vitis vinifera]

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/431 (85%), Positives = 408/431 (94%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           MAQTPLHVS+GYN  EIVK LL W G +KVELEA+NMYGETPLHMAAKNGCN AA+LLLA
Sbjct: 47  MAQTPLHVSSGYNNVEIVKFLLNWQGPEKVELEAKNMYGETPLHMAAKNGCNAAAQLLLA 106

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
           HGA +EAKANNGMTPLHL+VWYS+R+ED +TVKTLL+YNADCS+KDNEG TPL+HLS GP
Sbjct: 107 HGAIVEAKANNGMTPLHLAVWYSLRAEDCSTVKTLLDYNADCSSKDNEGMTPLNHLSQGP 166

Query: 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
           GS KLRELL  + +EQ KRRALEACSETKAKMDELE+ LSNIVGL++LK QLR+WAKGML
Sbjct: 167 GSEKLRELLHRYLDEQIKRRALEACSETKAKMDELEDALSNIVGLNDLKSQLRRWAKGML 226

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
           LDERRKALGLKVG+R+PPHMAFLGNPGTGKTMVAR+LGRLL+MVG+LPTD+VTEVQRTDL
Sbjct: 227 LDERRKALGLKVGSRKPPHMAFLGNPGTGKTMVARVLGRLLHMVGVLPTDKVTEVQRTDL 286

Query: 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
           VGEFVGHTGPKTRR+IKEAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GKV
Sbjct: 287 VGEFVGHTGPKTRRKIKEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKV 346

Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
           VVIFAGYSEPMKRVI+SNEGFCRRVTKFFHF DFNS+ELAKIL++KMNNQTEDSLLYGF+
Sbjct: 347 VVIFAGYSEPMKRVISSNEGFCRRVTKFFHFGDFNSQELAKILNLKMNNQTEDSLLYGFR 406

Query: 363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422
           LH SCS+D++AALIE+ETTEKQR+EMNGGLVDPMLVNARENLDLRLSF+C+DTDEL TIT
Sbjct: 407 LHPSCSVDSVAALIERETTEKQRKEMNGGLVDPMLVNARENLDLRLSFECIDTDELLTIT 466

Query: 423 LEDLEAGLKLL 433
           +EDLEAGL LL
Sbjct: 467 IEDLEAGLSLL 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531267|ref|XP_003534199.1| PREDICTED: protein CbxX, chromosomal-like [Glycine max]

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/431 (83%), Positives = 405/431 (93%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           MAQTPLHVSAG+N+ EIVK LL+W G DKVE+EA+NMYGETPLHMAAKNGCN+AA+LLLA
Sbjct: 52  MAQTPLHVSAGHNRTEIVKFLLDWQGADKVEMEAKNMYGETPLHMAAKNGCNKAAQLLLA 111

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
            GA +EA+ANNGMTPLHL+VWYS+R+E++ TVKTLLEYNADCSAKD+EG TPL+HLS GP
Sbjct: 112 RGAIVEARANNGMTPLHLAVWYSLRAEEFLTVKTLLEYNADCSAKDDEGMTPLNHLSQGP 171

Query: 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
           G+ KLRELLLWH EEQRK+RA+EACSETKAKMDELE +LSNIVGL++LK+QLRKWAKGML
Sbjct: 172 GTEKLRELLLWHLEEQRKQRAIEACSETKAKMDELEKQLSNIVGLNDLKVQLRKWAKGML 231

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
           LDE+R++LGL VG RRPPHMAFLGNPGTGKTMVARILG+LL+ VGILPTD+VTEVQRTDL
Sbjct: 232 LDEKRRSLGLHVGRRRPPHMAFLGNPGTGKTMVARILGKLLHTVGILPTDKVTEVQRTDL 291

Query: 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
           VGEFVGHTGPKTRR+IKEAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GK+
Sbjct: 292 VGEFVGHTGPKTRRKIKEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKI 351

Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
           VVIFAGYS+PMKRVI SNEGFCRRVTKFF FNDFNSEELA+ILHIKMNN  EDSLLYGFK
Sbjct: 352 VVIFAGYSKPMKRVITSNEGFCRRVTKFFQFNDFNSEELAQILHIKMNNLAEDSLLYGFK 411

Query: 363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422
           LH+ CS+ ++AALIE+ETTEKQR+E NGGLVD MLVNARENLDLRLSFDC+DT+EL TIT
Sbjct: 412 LHTDCSIKSLAALIERETTEKQRQETNGGLVDTMLVNARENLDLRLSFDCMDTEELLTIT 471

Query: 423 LEDLEAGLKLL 433
           L DLEAGL+LL
Sbjct: 472 LVDLEAGLQLL 482

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520543|ref|XP_003528921.1| PREDICTED: protein CbxX, chromosomal-like [Glycine max]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/431 (84%), Positives = 402/431 (93%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           MAQTPLHVSAG+N+ EIVK LL+W G DKVE+EA+NMYGETPLHMAAKNGCNEAA+LLLA
Sbjct: 48  MAQTPLHVSAGHNRTEIVKFLLDWQGTDKVEMEAKNMYGETPLHMAAKNGCNEAAQLLLA 107

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
            GA +EA+ANNGMTPLHL+VWYS+R+E++ TVKTLLEYNADCSAKD+EG TPL+HLS GP
Sbjct: 108 CGATVEARANNGMTPLHLAVWYSLRAEEFLTVKTLLEYNADCSAKDDEGMTPLNHLSQGP 167

Query: 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
           G+ KLRELLLWH EEQRK+RA+EACSETKAKMDELE ELSNIVGL++LK+QLRKWAKGML
Sbjct: 168 GTEKLRELLLWHLEEQRKQRAIEACSETKAKMDELEKELSNIVGLNDLKVQLRKWAKGML 227

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
           LDE+R++LGL VG RRPPHMAFLGNPGTGKTMVARILG+LL+MVGILPTD+VTEVQRTDL
Sbjct: 228 LDEKRRSLGLHVGRRRPPHMAFLGNPGTGKTMVARILGKLLHMVGILPTDKVTEVQRTDL 287

Query: 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
           VGEFVGHTGPKTRR+IKEAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GK+
Sbjct: 288 VGEFVGHTGPKTRRKIKEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKI 347

Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
           VVIFAGY EPMKRVIASNEGFCRRVTKFF FNDFNSEELA+ILHIKMNN  EDSLLYGF 
Sbjct: 348 VVIFAGYCEPMKRVIASNEGFCRRVTKFFQFNDFNSEELAQILHIKMNNLAEDSLLYGFM 407

Query: 363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422
           LH  C + A+AALIE+ETTEKQR+E NGGLVD MLVNARENLDLRLSFDC+DT+EL TIT
Sbjct: 408 LHPDCCIKALAALIERETTEKQRKETNGGLVDTMLVNARENLDLRLSFDCMDTEELLTIT 467

Query: 423 LEDLEAGLKLL 433
           L DLEAGL+ L
Sbjct: 468 LVDLEAGLQQL 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119764|ref|XP_002331155.1| predicted protein [Populus trichocarpa] gi|222873238|gb|EEF10369.1| predicted protein [Populus trichocarpa]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/431 (84%), Positives = 401/431 (93%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           MAQTPLHVSAGYN+AEI+K LL+W G +KVELE +NMYGETPLHMAAKNGC+EAA+LLLA
Sbjct: 48  MAQTPLHVSAGYNRAEIIKFLLDWQGAEKVELEPRNMYGETPLHMAAKNGCSEAARLLLA 107

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
           HGA IEAKANNGMTPLHL+VWYSIR ED++TVKTLLEYNADCSA+DNEG TPL+HLS GP
Sbjct: 108 HGAIIEAKANNGMTPLHLAVWYSIRVEDHSTVKTLLEYNADCSAEDNEGMTPLNHLSPGP 167

Query: 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
            S +L +LL WH EEQRKR+ALEACS+TKAKMDELE+ LSN+VGLH+LKIQLRKWAKGML
Sbjct: 168 RSEELCKLLQWHLEEQRKRKALEACSKTKAKMDELEDALSNVVGLHDLKIQLRKWAKGML 227

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
           LDERR+ALG+KVG RRPPHMAFLG+PGTGKTMVARILGRLL+MVG+LPTD+VTEVQRTDL
Sbjct: 228 LDERRRALGMKVGLRRPPHMAFLGSPGTGKTMVARILGRLLHMVGVLPTDKVTEVQRTDL 287

Query: 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
           VGEFVGHTGPKTRR+I EAEGGILFVDEAYRLIP QK D+KDYGIEALEEIMSVMD GKV
Sbjct: 288 VGEFVGHTGPKTRRKIAEAEGGILFVDEAYRLIPSQKQDEKDYGIEALEEIMSVMDSGKV 347

Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
           VVIFAGYSEPMKRVI+SNEGFCRRVTKFFHFNDF+SE+LA I HIKMNNQ E S LYGFK
Sbjct: 348 VVIFAGYSEPMKRVISSNEGFCRRVTKFFHFNDFSSEDLANICHIKMNNQDEGSSLYGFK 407

Query: 363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422
           LHSSCS DAIAALI++ETTEKQRREMNGGLV+ ML NARE LDLRL F+C+DTDEL+TIT
Sbjct: 408 LHSSCSGDAIAALIKRETTEKQRREMNGGLVNVMLTNARETLDLRLDFNCIDTDELQTIT 467

Query: 423 LEDLEAGLKLL 433
           LEDLEAG +LL
Sbjct: 468 LEDLEAGCQLL 478

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500765|ref|XP_003620671.1| Ankyrin repeat domain-containing protein [Medicago truncatula] gi|355495686|gb|AES76889.1| Ankyrin repeat domain-containing protein [Medicago truncatula]

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/431 (83%), Positives = 403/431 (93%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           MA TPLHVSAG N+A+IVK LLEW G+++VE+EA+NMYGETPLHMAAKNGC+EAA+LLLA
Sbjct: 47  MAHTPLHVSAGNNRADIVKFLLEWQGSERVEIEAKNMYGETPLHMAAKNGCSEAAQLLLA 106

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
           HGA IEA+ANNGMTPLHL+VW+S+R+E++ TVKTLLE+NADCSAKDNEG TPL+HLS GP
Sbjct: 107 HGASIEARANNGMTPLHLAVWHSLRAEEFLTVKTLLEHNADCSAKDNEGMTPLNHLSQGP 166

Query: 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
           G+ KLRELL WH EEQRKRRA++ACSETKAKMDELE ELSNIVGL++LKIQLRKWAKGML
Sbjct: 167 GNDKLRELLNWHLEEQRKRRAIKACSETKAKMDELEKELSNIVGLNDLKIQLRKWAKGML 226

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
           LDERR+ALGL VG RRPPHMAFLGNPGTGKTMVARILGRLL+MVGILPTD+VTEVQRTDL
Sbjct: 227 LDERRRALGLHVGTRRPPHMAFLGNPGTGKTMVARILGRLLHMVGILPTDKVTEVQRTDL 286

Query: 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
           VGEFVGHTGPKTR++I+EAEGGILFVDEAYRLIPMQK+DDKDYG+EALEEIMSVMD GK+
Sbjct: 287 VGEFVGHTGPKTRKKIQEAEGGILFVDEAYRLIPMQKSDDKDYGLEALEEIMSVMDSGKI 346

Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
           VVIFAGYSEPMKRVIASNEGFCRRVTKFFHF DF+S ELA ILHIKMNN  E SLLYGFK
Sbjct: 347 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFIDFSSAELATILHIKMNNLAEGSLLYGFK 406

Query: 363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422
           LHS+CS+ AI ALI++ETTEKQR+E NGGLVD M++NARENLDLRLSFDC+DT+EL TIT
Sbjct: 407 LHSNCSIKAIEALIQRETTEKQRKETNGGLVDTMMINARENLDLRLSFDCIDTEELLTIT 466

Query: 423 LEDLEAGLKLL 433
           LEDLEAGL  L
Sbjct: 467 LEDLEAGLGFL 477

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143544|ref|XP_002324992.1| predicted protein [Populus trichocarpa] gi|222866426|gb|EEF03557.1| predicted protein [Populus trichocarpa]

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/431 (83%), Positives = 401/431 (93%), Gaps = 1/431 (0%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           MAQTPLHVSAGYN+A+I+K LL+W G +KVELE +NM  +TPLHMAAKNGC EAA+LLLA
Sbjct: 48  MAQTPLHVSAGYNRADIIKFLLDWQGAEKVELEPRNM-AKTPLHMAAKNGCTEAARLLLA 106

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
           HGAF+EAKANNGMTPLHL+VWYSIR+ED++TVKTLLEYNADCSA+DNEG TPL+HLS GP
Sbjct: 107 HGAFVEAKANNGMTPLHLAVWYSIRAEDHSTVKTLLEYNADCSAEDNEGMTPLNHLSPGP 166

Query: 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
           GS ++R+LL WH EEQRKR+ALEACS+TKAKMDELE+ L+N+VGLHELK+QLRKWAKGML
Sbjct: 167 GSEEVRKLLHWHLEEQRKRKALEACSKTKAKMDELEDALTNVVGLHELKVQLRKWAKGML 226

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
           LDERR+ALG+KVG RRPPHMAFLG+PGTGKTMVARILGRLL+MVG+LPTD+VTEVQRTDL
Sbjct: 227 LDERRRALGMKVGMRRPPHMAFLGSPGTGKTMVARILGRLLHMVGVLPTDKVTEVQRTDL 286

Query: 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
           VGEFVGHTGPKTRR+I EAEGGILFVDEAYRLIP QK DDKDYGIEALEEIMSVMD GKV
Sbjct: 287 VGEFVGHTGPKTRRKIAEAEGGILFVDEAYRLIPSQKEDDKDYGIEALEEIMSVMDSGKV 346

Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
           VVIFAGYSEPMKRVI+SNEGFCRRVTKFFHFNDF+S++LA I HI MN Q E S LYGFK
Sbjct: 347 VVIFAGYSEPMKRVISSNEGFCRRVTKFFHFNDFSSKDLANICHINMNTQDEGSPLYGFK 406

Query: 363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422
           LH SC +DAIAALIE+ETTEKQRREMNGGLV+ ML NARENLDLRL F+CLDTDEL+TIT
Sbjct: 407 LHPSCCVDAIAALIERETTEKQRREMNGGLVNTMLANARENLDLRLDFNCLDTDELQTIT 466

Query: 423 LEDLEAGLKLL 433
           +EDLEAGL+LL
Sbjct: 467 IEDLEAGLQLL 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459838|ref|XP_004147653.1| PREDICTED: ESX-1 secretion system protein EccA1-like [Cucumis sativus] gi|449498823|ref|XP_004160644.1| PREDICTED: ESX-1 secretion system protein EccA1-like [Cucumis sativus]

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/431 (83%), Positives = 399/431 (92%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           M QTPLHVSAGYN+AEIV  LL W G + VELEA+NMYGETPLHMAAKNGCN+AA++LLA
Sbjct: 47  MGQTPLHVSAGYNRAEIVTFLLAWKGPENVELEAKNMYGETPLHMAAKNGCNDAARVLLA 106

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
           HGAF+EAKANNGMTPLHL+VWYS++SED  TVKTLL+YNADCSA D EG TPL+HLS   
Sbjct: 107 HGAFVEAKANNGMTPLHLAVWYSLQSEDCETVKTLLDYNADCSATDEEGMTPLNHLSQSS 166

Query: 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
            S KLRELL  H EEQRK++A+EACSETKAKM ELENELS+IVGLHELKIQL+KWAKGML
Sbjct: 167 CSKKLRELLNRHLEEQRKQKAIEACSETKAKMKELENELSHIVGLHELKIQLQKWAKGML 226

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
           LDERR+ALGLKVG RR PHMAFLGNPGTGKTMVARILG+LL+MVGILPTD+VTEVQRTDL
Sbjct: 227 LDERRRALGLKVGTRRSPHMAFLGNPGTGKTMVARILGKLLHMVGILPTDKVTEVQRTDL 286

Query: 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
           VGEFVGHTGPKTRR+IKEAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GK+
Sbjct: 287 VGEFVGHTGPKTRRKIKEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDSGKI 346

Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
           VVIFAGY EPMKRVI SNEGF RRVTKFF+FNDF+S+ELA ILHIKM+NQTEDSLLYGFK
Sbjct: 347 VVIFAGYCEPMKRVIDSNEGFHRRVTKFFYFNDFSSKELANILHIKMDNQTEDSLLYGFK 406

Query: 363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422
           LH +C+++AI+ LIE+ET EK+R+EMNGGLVDPMLVNARENLD RLSF+C+DT+ELRTIT
Sbjct: 407 LHPTCTIEAISDLIERETEEKRRKEMNGGLVDPMLVNARENLDGRLSFECIDTEELRTIT 466

Query: 423 LEDLEAGLKLL 433
           +EDLEAGL+LL
Sbjct: 467 MEDLEAGLRLL 477

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294047|dbj|BAB02004.1| unnamed protein product [Arabidopsis thaliana]

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/431 (80%), Positives = 387/431 (89%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           M  TPLHVSAG    +IVK LL W G+DKVELEA N YGETPLHMAAKNGCNEAAKLLL 
Sbjct: 36  MYHTPLHVSAGNGNVDIVKYLLAWTGSDKVELEAMNTYGETPLHMAAKNGCNEAAKLLLE 95

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
            GAFIEAKA+NGMTPLHL+VWYSI +++ +TVKTLL++NADCSAKDNEG TPLDHL  G 
Sbjct: 96  SGAFIEAKASNGMTPLHLAVWYSITAKEISTVKTLLDHNADCSAKDNEGMTPLDHLPQGQ 155

Query: 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
           GS KLRELL W  +EQRKR ALE C +TKAKM+ LE+ELSNIVGL ELK QLRKWAKGML
Sbjct: 156 GSEKLRELLRWFLQEQRKRSALEQCGKTKAKMELLEDELSNIVGLSELKTQLRKWAKGML 215

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
           LDERR+ALGL +G RRPPHMAFLGNPGTGKTMVAR+LG+LL  VGILPTD+VTEVQRTDL
Sbjct: 216 LDERRRALGLNIGTRRPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDL 275

Query: 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
           VGEFVGHTGPKTRR+I+EAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GK+
Sbjct: 276 VGEFVGHTGPKTRRKIQEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDTGKI 335

Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
           VVIFAGYSEPMKRVIASNEGFCRRVTKFF+F+DF+++ELA+ILHIKMNNQ ED+L YGF+
Sbjct: 336 VVIFAGYSEPMKRVIASNEGFCRRVTKFFNFSDFSAKELAQILHIKMNNQGEDTLFYGFR 395

Query: 363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422
           LH SC++  IA+LIE ETTEKQR+EMNGGLVD +LVNARENLDLRLSF+C+DT+E+ TI 
Sbjct: 396 LHESCTLQEIASLIEAETTEKQRKEMNGGLVDTLLVNARENLDLRLSFECVDTEEICTIK 455

Query: 423 LEDLEAGLKLL 433
           LEDLEAGL++ 
Sbjct: 456 LEDLEAGLRVF 466

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404228|ref|NP_566752.1| AAA-type ATPase family protein / ankyrin repeat family protein [Arabidopsis thaliana] gi|13507553|gb|AAK28639.1|AF360342_1 putative rubisco expression protein [Arabidopsis thaliana] gi|15293291|gb|AAK93756.1| putative rubisco expression protein [Arabidopsis thaliana] gi|332643395|gb|AEE76916.1| AAA-type ATPase family protein / ankyrin repeat family protein [Arabidopsis thaliana]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/431 (80%), Positives = 387/431 (89%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           M  TPLHVSAG    +IVK LL W G+DKVELEA N YGETPLHMAAKNGCNEAAKLLL 
Sbjct: 49  MYHTPLHVSAGNGNVDIVKYLLAWTGSDKVELEAMNTYGETPLHMAAKNGCNEAAKLLLE 108

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
            GAFIEAKA+NGMTPLHL+VWYSI +++ +TVKTLL++NADCSAKDNEG TPLDHL  G 
Sbjct: 109 SGAFIEAKASNGMTPLHLAVWYSITAKEISTVKTLLDHNADCSAKDNEGMTPLDHLPQGQ 168

Query: 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
           GS KLRELL W  +EQRKR ALE C +TKAKM+ LE+ELSNIVGL ELK QLRKWAKGML
Sbjct: 169 GSEKLRELLRWFLQEQRKRSALEQCGKTKAKMELLEDELSNIVGLSELKTQLRKWAKGML 228

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
           LDERR+ALGL +G RRPPHMAFLGNPGTGKTMVAR+LG+LL  VGILPTD+VTEVQRTDL
Sbjct: 229 LDERRRALGLNIGTRRPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDL 288

Query: 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
           VGEFVGHTGPKTRR+I+EAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GK+
Sbjct: 289 VGEFVGHTGPKTRRKIQEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDTGKI 348

Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
           VVIFAGYSEPMKRVIASNEGFCRRVTKFF+F+DF+++ELA+ILHIKMNNQ ED+L YGF+
Sbjct: 349 VVIFAGYSEPMKRVIASNEGFCRRVTKFFNFSDFSAKELAQILHIKMNNQGEDTLFYGFR 408

Query: 363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422
           LH SC++  IA+LIE ETTEKQR+EMNGGLVD +LVNARENLDLRLSF+C+DT+E+ TI 
Sbjct: 409 LHESCTLQEIASLIEAETTEKQRKEMNGGLVDTLLVNARENLDLRLSFECVDTEEICTIK 468

Query: 423 LEDLEAGLKLL 433
           LEDLEAGL++ 
Sbjct: 469 LEDLEAGLRVF 479

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	438
TAIR|locus:2091702	481	AT3G24530 [Arabidopsis thalian	0.956	0.871	0.804	3.3e-182
UNIPROTKB|Q81WX4	318	spoVK "Stage V sporulation pro	0.440	0.606	0.386	3.2e-33
TIGR_CMR|BA_3839	318	BA_3839 "stage V sporulation p	0.440	0.606	0.386	3.2e-33
UNIPROTKB|O53687	631	eccA3 "ESX-3 secretion system	0.589	0.408	0.343	2.9e-32
UNIPROTKB|O69733	573	eccA1 "ESX-1 secretion system	0.595	0.455	0.332	1.8e-31
TIGR_CMR|CHY_1391	296	CHY_1391 "stage V sporulation	0.422	0.625	0.397	1.6e-29
ASPGD|ASPL0000069352	2310	AN7246 [Emericella nidulans (t	0.477	0.090	0.292	7e-18
UNIPROTKB|P63744	610	eccA5 "ESX-5 secretion system	0.504	0.362	0.276	1.5e-15
UNIPROTKB|G4NES4	703	MGG_11680 "AAA family ATPase"	0.5	0.311	0.293	5.9e-14
ZFIN|ZDB-GENE-091113-6	1923	si:ch211-263m18.3 "si:ch211-26	0.287	0.065	0.385	5.7e-11

TAIR|locus:2091702 AT3G24530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1768 (627.4 bits), Expect = 3.3e-182, P = 3.3e-182
 Identities = 337/419 (80%), Positives = 377/419 (89%)

Query:     3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
             M  TPLHVSAG    +IVK LL W G+DKVELEA N YGETPLHMAAKNGCNEAAKLLL 
Sbjct:    49 MYHTPLHVSAGNGNVDIVKYLLAWTGSDKVELEAMNTYGETPLHMAAKNGCNEAAKLLLE 108

Query:    63 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
              GAFIEAKA+NGMTPLHL+VWYSI +++ +TVKTLL++NADCSAKDNEG TPLDHL  G 
Sbjct:   109 SGAFIEAKASNGMTPLHLAVWYSITAKEISTVKTLLDHNADCSAKDNEGMTPLDHLPQGQ 168

Query:   123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGML 182
             GS KLRELL W  +EQRKR ALE C +TKAKM+ LE+ELSNIVGL ELK QLRKWAKGML
Sbjct:   169 GSEKLRELLRWFLQEQRKRSALEQCGKTKAKMELLEDELSNIVGLSELKTQLRKWAKGML 228

Query:   183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242
             LDERR+ALGL +G RRPPHMAFLGNPGTGKTMVAR+LG+LL  VGILPTD+VTEVQRTDL
Sbjct:   229 LDERRRALGLNIGTRRPPHMAFLGNPGTGKTMVARVLGKLLNTVGILPTDKVTEVQRTDL 288

Query:   243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV 302
             VGEFVGHTGPKTRR+I+EAEGGILFVDEAYRLIPMQKADDKDYG+EALEEIMSVMD GK+
Sbjct:   289 VGEFVGHTGPKTRRKIQEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDTGKI 348

Query:   303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362
             VVIFAGYSEPMKRVIASNEGFCRRVTKFF+F+DF+++ELA+ILHIKMNNQ ED+L YGF+
Sbjct:   349 VVIFAGYSEPMKRVIASNEGFCRRVTKFFNFSDFSAKELAQILHIKMNNQGEDTLFYGFR 408

Query:   363 LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI 421
             LH SC++  IA+LIE ETTEKQR+EMNGGLVD +LVNARENLDLRLSF+C+DT+E+ TI
Sbjct:   409 LHESCTLQEIASLIEAETTEKQRKEMNGGLVDTLLVNARENLDLRLSFECVDTEEICTI 467

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0019538 "protein metabolic process" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q81WX4 spoVK "Stage V sporulation protein K" [Bacillus anthracis (taxid:1392)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 78/202 (38%), Positives = 124/202 (61%)

Query:   148 SETKAK---MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAF 204
             SET  K   +  +E E+  +VG+ ++K  +++    + ++++R+ +GLK   ++  HM F
Sbjct:    36 SETTTKHEMLQRIEEEMGKLVGMDDIKKIIKEIYAWIYVNKKRQEIGLK-SEKQVLHMLF 94

Query:   205 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 264
              GNPGTGKT VAR++G+LL+ + IL    + E +R DLVGE++GHT  KTR  IK+A GG
Sbjct:    95 KGNPGTGKTTVARMIGKLLFEMNILSKGHLVEAERADLVGEYIGHTAQKTRDLIKKAMGG 154

Query:   265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEG 322
             ILF+DEAY L    +  +KD+G EA++ ++  M+  +   V+I AGYS  M   ++ N G
Sbjct:   155 ILFIDEAYSLA---RGGEKDFGKEAIDTLVKHMEDKQHGFVLILAGYSREMNHFLSLNPG 211

Query:   323 FCRRVTKFFHFNDFNSEELAKI 344
                R      F D++  +L +I
Sbjct:   212 LQSRFPFIIEFADYSVNQLLEI 233

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|BA_3839 BA_3839 "stage V sporulation protein K" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 78/202 (38%), Positives = 124/202 (61%)

Query:   148 SETKAK---MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAF 204
             SET  K   +  +E E+  +VG+ ++K  +++    + ++++R+ +GLK   ++  HM F
Sbjct:    36 SETTTKHEMLQRIEEEMGKLVGMDDIKKIIKEIYAWIYVNKKRQEIGLK-SEKQVLHMLF 94

Query:   205 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 264
              GNPGTGKT VAR++G+LL+ + IL    + E +R DLVGE++GHT  KTR  IK+A GG
Sbjct:    95 KGNPGTGKTTVARMIGKLLFEMNILSKGHLVEAERADLVGEYIGHTAQKTRDLIKKAMGG 154

Query:   265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEG 322
             ILF+DEAY L    +  +KD+G EA++ ++  M+  +   V+I AGYS  M   ++ N G
Sbjct:   155 ILFIDEAYSLA---RGGEKDFGKEAIDTLVKHMEDKQHGFVLILAGYSREMNHFLSLNPG 211

Query:   323 FCRRVTKFFHFNDFNSEELAKI 344
                R      F D++  +L +I
Sbjct:   212 LQSRFPFIIEFADYSVNQLLEI 233

GO:0003674 "molecular_function" evidence=ND

GO:0030436 "asexual sporulation" evidence=ISS

UNIPROTKB|O53687 eccA3 "ESX-3 secretion system protein EccA3" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 359 (131.4 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 93/271 (34%), Positives = 147/271 (54%)

Query:   146 ACSETKAKM-DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAF 204
             A  E KA +  E E +L+  +GL E+K Q+ +    + ++  RK  GL V A+R  H+ F
Sbjct:   325 AAHERKAALLHEAELQLAEFIGLDEVKRQVSRLKSSVAMELVRKQRGLTV-AQRTHHLVF 383

Query:   205 LGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG 264
              G PGTGKT +AR++ ++   +G+L  + + EV R DL+G+ +G T  KT   I  A  G
Sbjct:   384 AGPPGTGKTTIARVVAKIYCGLGLLKRENIREVHRADLIGQHIGETEAKTNAIIDSALDG 443

Query:   265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--DGGKVVVIFAGYSEPMKRVIASNEG 322
             +LF+DEAY L+     +D  +G+ A++ +++ M  D  ++VVI AGY   + + + +NEG
Sbjct:   444 VLFLDEAYALVATGAKND--FGLVAIDTLLARMENDRDRLVVIIAGYRADLDKFLDTNEG 501

Query:   323 FCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA-IAALIEKETT 381
                R T+   F  + S EL +I H KM  Q  DS+     LH   ++ A +AA    +T 
Sbjct:   502 LRSRFTRNIDFPSYTSHELVEIAH-KMAEQ-RDSVFEQSALHDLEALFAKLAAESTPDTN 559

Query:   382 EKQRREM----NGGLVDPMLVNARENLDLRL 408
                RR +    NG  V  ++  + E  + RL
Sbjct:   560 GISRRSLDIAGNGRFVRNIVERSEEEREFRL 590

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0010106 "cellular response to iron ion starvation" evidence=IEP

GO:0033214 "iron assimilation by chelation and transport" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0055069 "zinc ion homeostasis" evidence=IDA

GO:0055072 "iron ion homeostasis" evidence=IDA

UNIPROTKB|O69733 eccA1 "ESX-1 secretion system protein EccA1" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 350 (128.3 bits), Expect = 1.8e-31, P = 1.8e-31
 Identities = 91/274 (33%), Positives = 145/274 (52%)

Query:   156 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMV 215
             E + EL   +GL  +K Q+ ++    L+   R A G+KV A+   HM F G PGTGKT +
Sbjct:   285 EAQAELDRQIGLTRVKNQIERYRAATLMARVRAAKGMKV-AQPSKHMIFTGPPGTGKTTI 343

Query:   216 ARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLI 275
             AR++  +L  +G++   ++ E  R D V E+ G +  KT + I +A GG+LF+DEAY L+
Sbjct:   344 ARVVANILAGLGVIAEPKLVETSRKDFVAEYEGQSAVKTAKTIDQALGGVLFIDEAYALV 403

Query:   276 PMQKADDKDYGIEALEEIMSVM--DGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF 333
               +      +G EAL+ +++ M  D  ++VVI AGYS  + R++ +NEG   R      F
Sbjct:   404 QERDGRTDPFGQEALDTLLARMENDRDRLVVIIAGYSSDIDRLLETNEGLRSRFATRIEF 463

Query:   334 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG-GL 392
             + ++ EEL +I ++      +DS L      +   + A   L ++    ++  ++ G G 
Sbjct:   464 DTYSPEELLEIANVIA--AADDSALTAEAAENF--LQAAKQLEQRMLRGRRALDVAGNGR 519

Query:   393 VDPMLVNARENL-DLRLS----FDCLDTDELRTI 421
                 LV A E   D+RL+     D LD D LR I
Sbjct:   520 YARQLVEASEQCRDMRLAQVLDIDTLDEDRLREI 553

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0044117 "growth of symbiont in host" evidence=IMP

GO:0051260 "protein homooligomerization" evidence=IPI

TIGR_CMR|CHY_1391 CHY_1391 "stage V sporulation protein K" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 76/191 (39%), Positives = 111/191 (58%)

Query:   153 KMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
             ++  L  EL  +VGL E+K  + +      + ++R    LK       HM F GNPGTGK
Sbjct:    24 QVSSLLKELDRMVGLIEVKEMVFEIYALAQIHKKRVQEKLKTN-NVSWHMVFKGNPGTGK 82

Query:   213 TMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAY 272
             T VARI+G+L   +GIL    + EV+R DLVGE++GHT  KTR ++K+A GG+LF+DEAY
Sbjct:    83 TTVARIIGKLFKEIGILTKGHLIEVERADLVGEYIGHTALKTREQLKKALGGVLFIDEAY 142

Query:   273 RLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFCRRVTKF 330
              L    +  DKD+G EA++ ++   +  +  +V+I AGY + M  ++  N G   R    
Sbjct:   143 SLA---RGGDKDFGREAIDVVVKGAEDYRDNLVIILAGYYDEMNYLLEQNPGLKSRFPIE 199

Query:   331 FHFNDFNSEEL 341
               F D+  EEL
Sbjct:   200 ITFPDYTDEEL 210

GO:0005524 "ATP binding" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

ASPGD|ASPL0000069352 AN7246 [Emericella nidulans (taxid:162425)]

 Score = 252 (93.8 bits), Expect = 7.0e-18, P = 7.0e-18
 Identities = 64/219 (29%), Positives = 116/219 (52%)

Query:   163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 222
             +IVG   +  +L ++ + +   +  + L +      P +  F G PG+GKT  AR +G++
Sbjct:  1844 DIVGCESIISKLEEYRQSV---KNMRELDMDPKEHVPFNFLFRGPPGSGKTSTARKMGKV 1900

Query:   223 LYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADD 282
              Y +G+L +  V E   TDL+G+++GHTGPKT+  ++++ G +L +DEAYRL   Q A  
Sbjct:  1901 YYDMGLLSSAEVIESSATDLIGQYIGHTGPKTQELLEKSLGKVLLIDEAYRLAEGQFA-- 1958

Query:   283 KDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 342
             K+   E ++ I       K+++I AGY   + R++  N G   R  +   FN     +  
Sbjct:  1959 KEAMDEMVDCITKPKFFQKLIIILAGYDNDINRLMTINPGLTSRFPEELEFNGLAPADCL 2018

Query:   343 KILHIKMNNQTEDSL--LYGFKLHSSCSMDAIAALIEKE 379
             ++L   +  +  D L  +  F L +   +D+ ++L +K+
Sbjct:  2019 QLLTKLLQRRKADFLPKVNSFDLDA---LDSPSSLFQKK 2054

GO:0005575 "cellular_component" evidence=ND

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|P63744 eccA5 "ESX-5 secretion system protein EccA5" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 224 (83.9 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 63/228 (27%), Positives = 108/228 (47%)

Query:   133 WHSEEQRKRRALEAC--SETKAK-MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKA 189
             W  +    R   EA   +E  AK + E + EL+ ++G+ + K +++       ++  R  
Sbjct:   282 WDPDSAPTRAQTEAARHAEMAAKYLAEGDAELNAMLGMEQAKKEIKLIKSTTKVNLARAK 341

Query:   190 LGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH 249
             +GL V      H   LG PGTGKT VAR   + L  + +L    V E  RT L+G ++  
Sbjct:   342 MGLPVPVTSR-HTLLLGPPGTGKTSVARAFTKQLCGLTVLRKPLVVETSRTKLLGRYMAD 400

Query:   250 TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFA 307
                 T   ++ A GG +F DE + L     +    YG   +  ++  M+  +  +VV  A
Sbjct:   401 AEKNTEEMLEGALGGAVFFDEMHTLHEKGYSQGDPYGNAIINTLLLYMENHRDELVVFGA 460

Query:   308 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED 355
             GY++ M++++  N+G  RR +    F  +  +EL  +  + M  + ED
Sbjct:   461 GYAKAMEKMLEVNQGLRRRFSTVIEFFSYTPQELIALTQL-MGRENED 507

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|G4NES4 MGG_11680 "AAA family ATPase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 213 (80.0 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
 Identities = 68/232 (29%), Positives = 111/232 (47%)

Query:   139 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 198
             + R+  E     +       ++L  + GL E+K +     + M+  + R+ + L+ G R 
Sbjct:   357 KARQEWEHLKRAEGAQSAALDDLMEMTGLEEVK-EAFLTMQNMVDAKMRQNVSLQ-GERW 414

Query:   199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR-RR 257
                +  LGNPGTGKT VAR+ G+ L  VG +   R  E     L    +G +G ++    
Sbjct:   415 GASL--LGNPGTGKTTVARLYGKFLTSVGAIAGTRFEETTGAKLA--HLGVSGCESLIAD 470

Query:   258 IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKR 315
             I E+ GG+LFVDEAY+L     + +   G   L+ +++ ++   GK+V + AGY   M+ 
Sbjct:   471 ILESGGGVLFVDEAYQLT----SGNNQGGGAVLDFLLAEIENLVGKIVFVIAGYDSDMEA 526

Query:   316 VIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 367
               A N G   R      F+D+  EE+  IL  K++ +    +     L  SC
Sbjct:   527 FFAHNTGLRSRFPHQLRFSDYTDEEIHYILQHKIDKRYNGKMRCEGGLSGSC 578

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-091113-6 si:ch211-263m18.3 "si:ch211-263m18.3" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 52/135 (38%), Positives = 73/135 (54%)

Query:     6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
             TPLHV+A      IVKSLL+   +      A N+  ETPLHMAA+ G  E A+ LL + A
Sbjct:   439 TPLHVAAFMGHLNIVKSLLQRGASPN----ASNVKVETPLHMAARAGHCEVAQFLLQNNA 494

Query:    66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
              ++AKA +  TPLH +     R      VK L+E+ A+  +    G TPL H++   G A
Sbjct:   495 QVDAKAKDDQTPLHCAA----RMGHKELVKLLMEHKANPDSATTAGHTPL-HIAAREGHA 549

Query:   126 KLRELLLWHSEEQRK 140
             +   +LL  + +Q K
Sbjct:   550 QTTRILLDENAQQTK 564

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	438
TIGR02881	261	TIGR02881, spore_V_K, stage V sporulation protein	8e-49
CHL00181	287	CHL00181, cbbX, CbbX; Provisional	1e-46
TIGR02880	284	TIGR02880, cbbX_cfxQ, probable Rubsico expression	2e-46
TIGR03922	557	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas	2e-40
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-17
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-17
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-13
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	2e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-12
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-09
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	7e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-08
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	2e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-04
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	5e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-04
smart00248	30	smart00248, ANK, ankyrin repeats	7e-04
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	8e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	0.001
TIGR02928	365	TIGR02928, TIGR02928, orc1/cdc6 family replication	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.003
pfam13401	124	pfam13401, AAA_22, AAA domain	0.003
pfam06309	127	pfam06309, Torsin, Torsin	0.003
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	0.004

>gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K

 Score =  166 bits (423), Expect = 8e-49
 Identities = 100/276 (36%), Positives = 147/276 (53%), Gaps = 21/276 (7%)

Query: 157 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVA 216
           +E ELS +VGL E+K  +++    + ++E+RK  GLK   ++  HM F GNPGTGKT VA
Sbjct: 1   VERELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-KQVLHMIFKGNPGTGKTTVA 59

Query: 217 RILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 276
           RILG+L   + +L    + EV+R DLVGE++GHT  KTR  IK+A GG+LF+DEAY L  
Sbjct: 60  RILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSL-- 117

Query: 277 MQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN 334
             +  +KD+G EA++ ++  M+    + V+I AGYS+ M   ++ N G   R      F 
Sbjct: 118 -ARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFP 176

Query: 335 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ--RREM-NGG 391
           D+  EEL +I   +M  + E  L          + +A   L E      Q   RE  N  
Sbjct: 177 DYTVEELMEIA-ERMVKEREYKL----------TEEAKWKLREHLYKVDQLSSREFSNAR 225

Query: 392 LVDPMLVNARENLDLR-LSFDCLDTDELRTITLEDL 426
            V  ++  A     +R L       ++L  +  EDL
Sbjct: 226 YVRNIIEKAIRRQAVRLLDKSDYSKEDLMLLKKEDL 261

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group [Cellular processes, Sporulation and germination]. Length = 261

>gnl|CDD|177083 CHL00181, cbbX, CbbX; Provisional

 Score =  162 bits (411), Expect = 1e-46
 Identities = 85/208 (40%), Positives = 126/208 (60%), Gaps = 10/208 (4%)

Query: 148 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGN 207
           ++ +  +D L+ EL   VGL  +K ++R+ A  +L+D  RK LGL   +    HM+F G+
Sbjct: 12  TQIQEVLDILDEEL---VGLAPVKTRIREIAALLLIDRLRKNLGL-TSSNPGLHMSFTGS 67

Query: 208 PGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILF 267
           PGTGKT VA  +  +LY +G +    +  V R DLVG+++GHT PKT+  +K+A GG+LF
Sbjct: 68  PGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLF 127

Query: 268 VDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVIASNEGFC 324
           +DEAY L    K D ++DYG EA+E ++ VM+  +  +VVIFAGY + M +   SN G  
Sbjct: 128 IDEAYYLY---KPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLS 184

Query: 325 RRVTKFFHFNDFNSEELAKILHIKMNNQ 352
            R+     F D+  EEL +I  I +  Q
Sbjct: 185 SRIANHVDFPDYTPEELLQIAKIMLEEQ 212

Length = 287

>gnl|CDD|200217 TIGR02880, cbbX_cfxQ, probable Rubsico expression protein CbbX

 Score =  161 bits (409), Expect = 2e-46
 Identities = 101/291 (34%), Positives = 152/291 (52%), Gaps = 19/291 (6%)

Query: 142 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 200
           RA    S     +D+L+ EL   +GL  +K ++R+ A  +L++  R+ LGL   A   P 
Sbjct: 5   RAEYEGSGITEVLDQLDREL---IGLKPVKTRIREIAALLLVERARQKLGL---ASAAPT 58

Query: 201 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
            HM+F GNPGTGKT VA  + ++L+ +G +    +  V R DLVG+++GHT PKT+  +K
Sbjct: 59  LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 118

Query: 260 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 317
            A GG+LF+DEAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY + M    
Sbjct: 119 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYKDRMDSFF 176

Query: 318 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 377
            SN GF  RV     F D++ EEL +I  + ++ Q      Y F   +  +     AL  
Sbjct: 177 ESNPGFSSRVAHHIDFPDYSDEELLEIAGLMLDEQQ-----YRFTAEAETAFADYIALRR 231

Query: 378 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 428
            +      R +   L D   +     L        LD  +L TI  ED+ A
Sbjct: 232 TQPHFANARSIRNAL-DRARLRQANRLFTASD-GVLDKSDLSTIAPEDILA 280

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. Length = 284

>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA

 Score =  151 bits (383), Expect = 2e-40
 Identities = 102/326 (31%), Positives = 155/326 (47%), Gaps = 35/326 (10%)

Query: 133 WHSEEQRKRRALEACS--ETKAK-MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKA 189
           W       R      +  E KAK + E E EL+  +GL  +K Q+        +   R  
Sbjct: 244 WDPSSAPSRAEFVDPAAAERKAKLLAEAEAELAEQIGLERVKRQVAALKSSTAMALARAE 303

Query: 190 LGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH 249
            GL V A+   HM F G PGTGKT +AR++ ++   +G+L    V EV R DL+G+++G 
Sbjct: 304 RGLPV-AQTSNHMLFAGPPGTGKTTIARVVAKIYCGLGVLRKPLVREVSRADLIGQYIGE 362

Query: 250 TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--DGGKVVVIFA 307
           +  KT   I  A GG+LF+DEAY L+         +G+EA++ +++ M  D  ++VVI A
Sbjct: 363 SEAKTNEIIDSALGGVLFLDEAYTLVETGYGQKDPFGLEAIDTLLARMENDRDRLVVIGA 422

Query: 308 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 367
           GY + + + +  NEG   R T+   F  ++ +EL +I   +M  + +  L          
Sbjct: 423 GYRKDLDKFLEVNEGLRSRFTRVIEFPSYSPDELVEIAR-RMATERDSVL---------- 471

Query: 368 SMDAIAALIEKETTEKQ----------RREM----NGGLVDPMLVNARENLDLRL----S 409
              A  AL+E  TT  Q          RR +    NG  V  ++  A E  D RL     
Sbjct: 472 DDAAADALLEAATTLAQDTTPDANGDLRRGLDIAGNGRFVRNVVERAEEERDFRLDHSDR 531

Query: 410 FDCLDTDELRTITLEDLEAGLKLLLR 435
            D +  D+L  IT +D+   +  LLR
Sbjct: 532 LDAVTVDDLMEITADDVARAVASLLR 557

This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  103 bits (258), Expect = 1e-26
 Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 9/128 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH++A     E+VK LLE    +  ++ A++  G TPLH+AAKNG  E  KLLL  G
Sbjct: 8   RTPLHLAASNGHLEVVKLLLE----NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + A+  +G TPLH     + R+ +   VK LL++ AD +A+D +G+TPL HL+   G 
Sbjct: 64  ADVNARDKDGNTPLH----LAARNGNLDVVKLLLKHGADVNARDKDGRTPL-HLAAKNGH 118

Query: 125 AKLRELLL 132
            ++ +LLL
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.7 bits (210), Expect = 7e-20
 Identities = 46/99 (46%), Positives = 60/99 (60%), Gaps = 5/99 (5%)

Query: 36  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 95
           A++  G TPLH+AA NG  E  KLLL +GA + AK N+G TPLHL+            VK
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNG----HLEIVK 57

Query: 96  TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            LLE  AD +A+D +G TPL HL+   G+  + +LLL H
Sbjct: 58  LLLEKGADVNARDKDGNTPL-HLAARNGNLDVVKLLLKH 95

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 76.5 bits (189), Expect = 2e-17
 Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 10/101 (9%)

Query: 8   LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 67
           LH++A     E+VK LLE  G D    +      +T LH+AA+NG  E  KLLL HGA +
Sbjct: 1   LHLAAKNGNLELVKLLLE-KGADVNLGDT-----DTALHLAARNGNLEIVKLLLEHGADV 54

Query: 68  EAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 108
            AK  +G T LH     + R+ +   VK LLE+ AD + KD
Sbjct: 55  NAKDKDGNTALH----LAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 83.5 bits (206), Expect = 2e-17
 Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 7   PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF 66
           P+H++  +N  +I+K LLE           ++  GE+PLH AA+ G     KLL+ HG  
Sbjct: 160 PIHIAIKHNFFDIIKLLLE----KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH 215

Query: 67  IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 126
           I  K  NG TPLH ++ ++ RS        LL  NA  + +D +G TPL H  N P    
Sbjct: 216 IMNKCKNGFTPLHNAIIHN-RS-----AIELLINNASINDQDIDGSTPLHHAINPPCDID 269

Query: 127 LRELLLWHS-----EEQRKRRALEACSETKAKMDELENELSNIVGLHE 169
           + ++LL+H      ++ +    ++   +   K   +++ ++N V + E
Sbjct: 270 IIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKE 317

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 11/132 (8%)

Query: 6   TPLHV---SAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA-AKLLL 61
           TPLH+    +     +IV+ LLE  G D   + A    G TPLH+   N       KLL+
Sbjct: 49  TPLHLYLHYSSEKVKDIVRLLLE-AGAD---VNAPERCGFTPLHLYLYNATTLDVIKLLI 104

Query: 62  AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD-HLSN 120
             GA + AK   G TPLH  V+ S  + +   ++ LL   AD +A D  G TPL   L +
Sbjct: 105 KAGADVNAKDKVGRTPLH--VYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS 162

Query: 121 GPGSAKLRELLL 132
              + +L  LL+
Sbjct: 163 RNANVELLRLLI 174

Length = 471

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 15/110 (13%)

Query: 204 FLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE- 262
             G PGTGKT +A+ + + L            E+  ++LV ++VG +  + R   + A+ 
Sbjct: 3   LYGPPGTGKTTLAKAVAKELGA-------PFIEISGSELVSKYVGESEKRLRELFEAAKK 55

Query: 263 --GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVI 305
               ++F+DE   L   + +         + ++++ +DG      KV+VI
Sbjct: 56  LAPCVIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVI 105

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 70.0 bits (171), Expect = 6e-13
 Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH +      E +K L E+  +  V +E  N  G  P+H+A K+   +  KLLL  G
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGAD--VNIEDDN--GCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A+   K NNG +PLH +  Y     DYA +K L+++      K   G TPL
Sbjct: 181 AYANVKDNNGESPLHNAAEYG----DYACIKLLIDHGNHIMNKCKNGFTPL 227

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 66.8 bits (162), Expect = 1e-12
 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 17/135 (12%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG-----CNEAAKLL 60
            PLH +A     +IVK LL        ++ A++  G+TPLH+AA NG       E AKLL
Sbjct: 75  LPLHSAASKGDDKIVKLLLASG----ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLL 130

Query: 61  LAHGA---FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
           L  GA       +  +G TPLH    ++  + D   V+ LLE  AD +++++ G T L  
Sbjct: 131 LEAGADLDVNNLRDEDGNTPLH----WAALNGDADIVELLLEAGADPNSRNSYGVTAL-D 185

Query: 118 LSNGPGSAKLRELLL 132
            +   G  +L +LLL
Sbjct: 186 PAAKNGRIELVKLLL 200

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 6  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
          T LH++A     EIVK LLE       ++ A++  G T LH+AA+NG  E  KLLL HGA
Sbjct: 30 TALHLAARNGNLEIVKLLLEH----GADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Query: 66 FIEAK 70
           I  K
Sbjct: 86 DINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.7 bits (148), Expect = 8e-12
 Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 6/73 (8%)

Query: 45  LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 104
           LH+AAKNG  E  KLLL  GA +     +  T LH     + R+ +   VK LLE+ AD 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALH----LAARNGNLEIVKLLLEHGADV 54

Query: 105 SAKDNEGKTPLDH 117
           +AKD +G T L  
Sbjct: 55  NAKDKDGNTALHL 67

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 66.4 bits (162), Expect = 9e-12
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 12/113 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-EAAKLLLAH 63
            +PLH +  +    IV  LLE   +     +A++  G TPLH++     + +  KLLL H
Sbjct: 202 NSPLHHAVKHYNKPIVHILLENGAS----TDARDKCGNTPLHISVGYCKDYDILKLLLEH 257

Query: 64  GAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           G  + AK+   G+T LH S    I+SE    +K LLEY AD ++ ++   TPL
Sbjct: 258 GVDVNAKSYILGLTALHSS----IKSER--KLKLLLEYGADINSLNSYKLTPL 304

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 14/136 (10%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-----EAAKLL 60
            PL+++      ++VK LL    ++  ++ +      TPLH  +    N     E  KLL
Sbjct: 37  LPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL 92

Query: 61  LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH--L 118
           L +GA + A  NNG+TPL  ++  S +S  Y+ V+ LL+  A+ + K+++G+  L H  L
Sbjct: 93  LEYGANVNAPDNNGITPLLYAI--SKKSNSYSIVEYLLDNGANVNIKNSDGENLL-HLYL 149

Query: 119 SNGPGSAKLRELLLWH 134
            +     K+ +LL+  
Sbjct: 150 ESNKIDLKILKLLIDK 165

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 11/131 (8%)

Query: 6   TPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA--AKLLLA 62
           TPLH+        +++K L++   +    + A++  G TPLH+            +LLL 
Sbjct: 85  TPLHLYLYNATTLDVIKLLIKAGAD----VNAKDKVGRTPLHVYLSGFNINPKVIRLLLR 140

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG- 121
            GA + A    GMTPL   V    R+ +   ++ L++  AD  A D+  ++ L H     
Sbjct: 141 KGADVNALDLYGMTPLA--VLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSF 198

Query: 122 -PGSAKLRELL 131
            P +  +REL+
Sbjct: 199 KPRARIVRELI 209

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 58.3 bits (140), Expect = 9e-10
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 25/133 (18%)

Query: 5   QTPLHVSAGYNK-----AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 59
            TPLH++A          E+ K LLE  G D      ++  G TPLH AA NG  +  +L
Sbjct: 107 DTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDGNTPLHWAALNGDADIVEL 165

Query: 60  LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY---------------NADC 104
           LL  GA   ++ + G+T L      + ++     VK LL+                NA+ 
Sbjct: 166 LLEAGADPNSRNSYGVTALD----PAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANV 221

Query: 105 SAKDNEGKTPLDH 117
           S ++    T L  
Sbjct: 222 SKRNILNLTSLII 234

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 57.7 bits (139), Expect = 5e-09
 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 9/118 (7%)

Query: 18  EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 77
           +++K++L+      +++  ++   +T LH A K G  E+ K+L  +GA +  + +NG  P
Sbjct: 105 DMIKTILD----CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYP 160

Query: 78  LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 135
           +H+    +I+   +  +K LLE  A  + KDN G++PL H +   G     +LL+ H 
Sbjct: 161 IHI----AIKHNFFDIIKLLLEKGAYANVKDNNGESPL-HNAAEYGDYACIKLLIDHG 213

Length = 434

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 220
           L +I GL E K +L K A    L  +R  L  K+G R P  +   G PGTGKT++A+ + 
Sbjct: 241 LDDIGGLEEAKEEL-KEAIETPL--KRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVA 297

Query: 221 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPM 277
                       R   V+ ++L+ ++VG +    R   ++A      I+F+DE   L   
Sbjct: 298 LESR-------SRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASG 350

Query: 278 QKADDKDYGIEALEEIMSVMDGGK----VVVI 305
           +   +   G   + ++++ +DG +    V+VI
Sbjct: 351 RGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI 382

Length = 494

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 11/126 (8%)

Query: 11  SAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK---LLLAHGAFI 67
           +A     E V+ LL    +     E    YG+TPLH+       +      LLL  GA +
Sbjct: 21  NASNVTVEEVRRLLAAGADVNFRGE----YGKTPLHLYLHYSSEKVKDIVRLLLEAGADV 76

Query: 68  EAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD-HLSNGPGSAK 126
            A    G TPLHL ++ +   +    +K L++  AD +AKD  G+TPL  +LS    + K
Sbjct: 77  NAPERCGFTPLHLYLYNATTLD---VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPK 133

Query: 127 LRELLL 132
           +  LLL
Sbjct: 134 VIRLLL 139

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 9/114 (7%)

Query: 6   TPLH-VSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-EAAKLLLAH 63
           TPLH  S   + + +V  LLE       ++ A+N+ GETPL++ AKNG + E  + L+  
Sbjct: 275 TPLHHASQAPSLSRLVPKLLE----RGADVNAKNIKGETPLYLMAKNGYDTENIRTLIML 330

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
           GA + A     +TPLH +   S    +   V TLLE  A+ +A+D   KTP+ +
Sbjct: 331 GADVNAADRLYITPLHQA---STLDRNKDIVITLLELGANVNARDYCDKTPIHY 381

Length = 682

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 184 DERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDRVTEVQRTD 241
           +E  +AL   +    P ++   G PGTGKT +AR +   L+  G   L  +    ++   
Sbjct: 4   EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV 63

Query: 242 LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-DGG 300
           +   F            ++A+ G+LF+DE   L    +          LE +  +  D  
Sbjct: 64  VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALL----RVLETLNDLRIDRE 119

Query: 301 KVVVIFA 307
            V VI A
Sbjct: 120 NVRVIGA 126

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           T LH +       + + LL +  N  +  +  N    +PLH A K+       +LL +GA
Sbjct: 170 TALHYATENKDQRLTELLLSYGANVNIPDKTNN----SPLHHAVKHYNKPIVHILLENGA 225

Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHLS 119
             +A+   G TPLH+SV Y     DY  +K LLE+  D +AK    G T L H S
Sbjct: 226 STDARDKCGNTPLHISVGYCK---DYDILKLLLEHGVDVNAKSYILGLTAL-HSS 276

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 23/178 (12%)

Query: 6   TPLH--VSAGYNKAEIVKSLLEWPGN----DKVEL--------EAQNMYGETPLHMAAKN 51
             LH  + +     +I+K L++   +    ++V            +++YG TPLH A  N
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202

Query: 52  GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD--- 108
              E  K LL  GA        G TPLH     +I + +    K LL             
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPLH----IAILNNNKEIFKLLLNNGPSIKTIIETL 258

Query: 109 --NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNI 164
              + K              +  + L      + R+ +E     K  ++E E E+  +
Sbjct: 259 LYFKDKDLNTITKIKMLKKSIMYMFLLDPGFYKNRKLIENSKSLKDVINECEKEIERM 316

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 23 LLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 80
          LLE   +  ++L A +  G TPLH+AAK G  E  + LL  G  +  + ++G+T L L
Sbjct: 1  LLE---HGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 8/132 (6%)

Query: 2   QMAQTPLHVSAGYNK-AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
           ++  TPLH ++  ++  +IV +LLE   N    + A++   +TP+H AA          L
Sbjct: 339 RLYITPLHQASTLDRNKDIVITLLELGAN----VNARDYCDKTPIHYAAVRNNVVIINTL 394

Query: 61  LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 120
           L +GA IEA +    T LH ++     +  Y +VKTL++  A+ ++K+ +  TPL +   
Sbjct: 395 LDYGADIEALSQKIGTALHFALC---GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACK 451

Query: 121 GPGSAKLRELLL 132
                 + E+LL
Sbjct: 452 KNCKLDVIEMLL 463

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL 98
          T LH AA +G  E  K LL  G  I     +G T LH++        +   +K LL
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAEN----GNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 6   TPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
           TPLH  A  +  K  +V  LL       + + A+N YG+TPLH AA      A + L+A 
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLI----AGISINARNRYGQTPLHYAAVFNNPRACRRLIAL 279

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 120
           GA I A +++G TPL L     +R+ +   V+  L  N             L+  S 
Sbjct: 280 GADINAVSSDGNTPLSL----MVRNNNGRAVRAALAKNPSAETVAAT----LNTASV 328

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN 72
           G TPLH+AA+NG  E  KLLL  GA + A+  
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 17  AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 76
           AEI K LL +  +  ++   +   G T LH A +N      +LLL++GA +        +
Sbjct: 147 AEITKLLLSYGADINMKDRHK---GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNS 203

Query: 77  PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
           PLH    ++++  +   V  LLE  A   A+D  G TPL H+S G
Sbjct: 204 PLH----HAVKHYNKPIVHILLENGASTDARDKCGNTPL-HISVG 243

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 42/201 (20%)

Query: 33  ELEAQNMYGETPLHMAAKNGCNEAA-------KLLLAHGAFIEAKANNGMTPLHLSVWYS 85
            L  + +      HM     C  AA       ++LL  GA    +  +G TPLH++    
Sbjct: 67  NLTTEEVIDPVVAHMLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANG 126

Query: 86  IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALE 145
                   V+ LLE+ AD +  D +GKTPL+ L+   G  ++ +LL  HS+   +   L 
Sbjct: 127 ----HVQVVRVLLEFGADPTLLDKDGKTPLE-LAEENGFREVVQLLSRHSQCHFE---LG 178

Query: 146 ACSETKAKMDELEN-----ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP 200
           A     AK D         E S I   H     + +   G L+                 
Sbjct: 179 AN----AKPDSFTGKPPSLEDSPISSHHPDFSAVPQPMMGSLI----------------- 217

Query: 201 HMAFLGNPGTGKTMVARILGR 221
            +  +G PG GKT VAR + R
Sbjct: 218 -VIMVGLPGRGKTYVARQIQR 237

Length = 664

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 29  NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY-SIR 87
                L A+++ G  PLH AA  G ++  KLLLA GA + AK  +G TPLHL+    +  
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPP 120

Query: 88  SEDYATVKTLLEYNADCS---AKDNEGKTPLDHLSNGPGSAKLRELLL 132
             +    K LLE  AD      +D +G TPL   +   G A + ELLL
Sbjct: 121 EGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL-NGDADIVELLL 167

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 6  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
          T LH +A   + E+VK LLE      V++   +  G T LH+AA+NG  E  KLLL
Sbjct: 3  TALHKAAISGRLELVKYLLE----KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 13/121 (10%)

Query: 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG----ILPTDRVTEVQRTDLVGEFVGHTGPK 253
               +  +G PG+GKT +AR L R L   G     +  + + E     L+   VG     
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60

Query: 254 T---------RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 304
                         ++ +  +L +DE   L+  ++        E    ++   +    V+
Sbjct: 61  GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120

Query: 305 I 305
           +
Sbjct: 121 L 121

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 14/119 (11%)

Query: 5   QTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL--L 60
           ++ LH      K  A IV+ L+   G D     A +M G TPLH  A     + + +  L
Sbjct: 188 RSLLHHHLQSFKPRARIVRELIR-AGCDPA---ATDMLGNTPLHSMATGSSCKRSLVLPL 243

Query: 61  LAHGAFIEAKANNGMTPLHL-SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 118
           L  G  I A+   G TPLH  +V+ + R+        L+   AD +A  ++G TPL  +
Sbjct: 244 LIAGISINARNRYGQTPLHYAAVFNNPRACRR-----LIALGADINAVSSDGNTPLSLM 297

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
           G TPLH+A      +  KLL+A GA  +    +  +PLHL+V       D   ++ L+++
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV----MMGDIKGIELLIDH 157

Query: 101 NADCSAKDNEGKTPL 115
            A    +D  G TPL
Sbjct: 158 KACLDIEDCCGCTPL 172

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 29/128 (22%)

Query: 32  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH------------ 79
            ++ A+++Y  TP+H AA+ G  +   LLL++GA +   A + ++ L             
Sbjct: 169 ADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIK 228

Query: 80  -------------LSVWYSIRSEDYATVKTLLEYNADCSAK--DNEGKTPLDHLSNGPGS 124
                        LS+  +IR+ED  T  +LL Y+A  S    D+   TPL H S  P  
Sbjct: 229 AIIDNRSNINKNDLSLLKAIRNEDLET--SLLLYDAGFSVNSIDDCKNTPLHHASQAPSL 286

Query: 125 AKLRELLL 132
           ++L   LL
Sbjct: 287 SRLVPKLL 294

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 60  LLAHGAF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
           LL HG   + A   NG TPLHL+  Y         V+ LL+   D + +D++G T LD
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYG----ALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 40 YGETPLHMAAKNGCNEAAKLLLAHGA 65
           G TPLH+AA+NG  E  KLLL HGA
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEHGA 26

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 4/44 (9%)

Query: 5  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 48
           TPLH++A Y   E+V+ LL+   +  +    ++  G T L +A
Sbjct: 17 NTPLHLAAKYGALELVQWLLKPGVDLNL----RDSDGLTALDLA 56

Length = 56

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 10/75 (13%)

Query: 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR-- 256
           P ++ F G PGTGKTM+A+ L      V +L       V+ T+L+GE VG    +     
Sbjct: 151 PKNVLFYGPPGTGKTMMAKALANEA-KVPLLL------VKATELIGEHVGDGARRIHELY 203

Query: 257 -RIKEAEGGILFVDE 270
            R ++A   I+F+DE
Sbjct: 204 ERARKAAPCIVFIDE 218

Length = 368

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 2   QMAQTPLHVS-AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-EAAKL 59
           Q   T LH +  G N    VK+L++   N    + ++N    TPLH A K  C  +  ++
Sbjct: 406 QKIGTALHFALCGTNPYMSVKTLIDRGAN----VNSKNKDLSTPLHYACKKNCKLDVIEM 461

Query: 60  LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103
           LL +GA + A       PL +++ Y      +  V  LL Y A+
Sbjct: 462 LLDNGADVNAINIQNQYPLLIALEY------HGIVNILLHYGAE 499

Length = 682

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEA 69
           G TPLH+AA+NG  E  KLLL  GA I A
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 21/154 (13%)

Query: 163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 222
           +I GL E K ++R+  +   L  +   L   +G   P  +   G PGTGKT++A+ +   
Sbjct: 179 DIGGLKEAKEKIREMVE---LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235

Query: 223 L--YMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPM 277
              Y + I            +++ ++ G +  + R   KEAE     I+F+DE   + P 
Sbjct: 236 AGAYFISI---------NGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPK 286

Query: 278 QKADDKDYGIEALEEIMSVMDG----GKVVVIFA 307
           ++    +     + +++++MDG    G+V+VI A
Sbjct: 287 REEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGA 320

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 73  NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 109
           +G TPLHL+     R+     VK LLE  AD +A+D 
Sbjct: 1   DGNTPLHLAA----RNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++    K +I+K L+        + +  N    +PLH+A   G  +  +LL+ H A
Sbjct: 104 TPLHLATILKKLDIMKLLIAR----GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159

Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103
            ++ +   G TPL +++       D A  K LL+  A+
Sbjct: 160 CLDIEDCCGCTPLIIAMAKG----DIAICKMLLDSGAN 193

Length = 413

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 18/154 (11%)

Query: 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 221
           S+I GL E+K +LR+  +  L   +   +  K+G R P  +   G PGTGKT++A+    
Sbjct: 453 SDIGGLEEVKQELREAVEWPL---KHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAK---- 505

Query: 222 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFVDEAYRLIPMQ 278
               V          V+  +++ ++VG +    R   R+ ++A   I+F DE   + P +
Sbjct: 506 ---AVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPAR 562

Query: 279 KAD-DKDYGIEALEEIMSVMDG----GKVVVIFA 307
            A  D       + ++++ MDG      VVVI A
Sbjct: 563 GARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAA 596

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation protein

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 62/280 (22%), Positives = 98/280 (35%), Gaps = 70/280 (25%)

Query: 183 LDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT------E 236
           ++E  KAL   +   RP ++   G  GTGKT V + + + L         RV       +
Sbjct: 24  IEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83

Query: 237 VQRT------DLV------GEFVGHTGPKTRR-------RIKEAEGGILFV-DEAYRLIP 276
           +  T      +L       GE V  TG  T          + E    ++ V DE   L+ 
Sbjct: 84  ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLV- 142

Query: 277 MQKADDKDYGIEALEEIMSVMDGGKVVVIF----AGYSEPM-KRVIASNEGFCRRVTKFF 331
               DD  Y +         +D  KV VI       + E +  RV +S    C       
Sbjct: 143 -GDDDDLLYQLSRARS-NGDLDNAKVGVIGISNDLKFRENLDPRVKSS---LCEEE---I 194

Query: 332 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI---AALIEKETTEKQRREM 388
            F  +++EEL  IL        E+     F          I   AAL  +E         
Sbjct: 195 IFPPYDAEELRDIL--------ENRAEKAFY-DGVLDDGVIPLCAALAAQEHG------- 238

Query: 389 NGGLVDPMLVNARENLDL-RLSFDCLDTDELRTITLEDLE 427
                     +AR+ +DL R++ +  + +    +T + +E
Sbjct: 239 ----------DARKAIDLLRVAGEIAEREGAERVTEDHVE 268

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other [DNA metabolism, DNA replication, recombination, and repair]. Length = 365

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 8/79 (10%)

Query: 6   TPLHVSAGYNKA-EIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAH 63
           TPLH+S GY K  +I+K LLE      V++ A++ + G T LH + K+      KLLL +
Sbjct: 236 TPLHISVGYCKDYDILKLLLE----HGVDVNAKSYILGLTALHSSIKS--ERKLKLLLEY 289

Query: 64  GAFIEAKANNGMTPLHLSV 82
           GA I +  +  +TPL  +V
Sbjct: 290 GADINSLNSYKLTPLSSAV 308

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 39/128 (30%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKA----------------------------- 71
           G +P+ +A K   +EA KLL+ HGA  + K                              
Sbjct: 35  GISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94

Query: 72  -----NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAK 126
                 +GMTPLHL+       +    +K L+   AD    + +  +PL HL+   G  K
Sbjct: 95  DDVFYKDGMTPLHLAT----ILKKLDIMKLLIARGADPDIPNTDKFSPL-HLAVMMGDIK 149

Query: 127 LRELLLWH 134
             ELL+ H
Sbjct: 150 GIELLIDH 157

Length = 413

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 27/128 (21%)

Query: 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------PTDRVTEVQRTDLVGEF 246
            R        G  G+GKT + R L R L    ++         P D + ++ R  L    
Sbjct: 1   RRGAGIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTPKDLLRKILR-ALGLPL 59

Query: 247 VGHTGPKTRRRI----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK- 301
            G T  +    I    K     +L +DEA  L            +EALEE+  + D  + 
Sbjct: 60  SGGTTAELLEAILDALKRRGRPLLIIDEAQHL-----------SLEALEELRDLYDLSEK 108

Query: 302 -VVVIFAG 308
            + VI  G
Sbjct: 109 GIQVILVG 116

Length = 124

>gnl|CDD|148114 pfam06309, Torsin, Torsin

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 24/108 (22%)

Query: 145 EACSETK--AKMDELENELSN-IVGLHELKIQLRKWAKGMLLDER-RKALGLKVGARRPP 200
           E C + +       LE +L+  + G H +K  + +  KG   + + RK L L        
Sbjct: 5   ECCGDCRISFNYHGLERDLARRLFGQHLVKQLVVRSVKGHWENPKPRKPLVL-------- 56

Query: 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG 248
             +F G  GTGK  VA I+   LY  G+          R+  V  FV 
Sbjct: 57  --SFHGWTGTGKNFVAEIIADNLYRDGL----------RSPYVHHFVA 92

This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia. Length = 127

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 16/81 (19%)

Query: 201 HMAFLGNPGTGKTMVARILGRLLYMV--------GILPTD---RVTEVQRTDLVGEFVGH 249
           H+   G PG GKT++AR L R L +          +LP+D              GEF   
Sbjct: 45  HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFV 104

Query: 250 TGPKTRRRIKEAEGGILFVDE 270
            GP        A   IL +DE
Sbjct: 105 PGPLFA-----AVRVILLLDE 120

Length = 329

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	438
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	100.0
CHL00181	287	cbbX CbbX; Provisional	100.0
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	100.0
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	100.0
KOG0736	953	consensus Peroxisome assembly factor 2 containing	100.0
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	100.0
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	100.0
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	100.0
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	100.0
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	100.0
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	100.0
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	100.0
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.98
CHL00195	489	ycf46 Ycf46; Provisional	99.98
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.97
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.97
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	99.97
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.97
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.97
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.97
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.97
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.97
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	99.97
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.97
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.96
CHL00176	638	ftsH cell division protein; Validated	99.96
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.96
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.95
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.95
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.95
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	99.95
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.94
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.94
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.94
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.94
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.93
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.92
CHL00206	2281	ycf2 Ycf2; Provisional	99.92
KOG2028	554	consensus ATPase related to the helicase subunit o	99.89
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.88
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.88
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.87
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.87
COG2204	464	AtoC Response regulator containing CheY-like recei	99.87
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.87
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.86
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.86
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.86
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.86
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.86
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.86
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.85
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.85
PRK13342	413	recombination factor protein RarA; Reviewed	99.85
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.84
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.84
PHA02791	284	ankyrin-like protein; Provisional	99.84
PRK13341	725	recombination factor protein RarA/unknown domain f	99.84
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.84
PHA02741	169	hypothetical protein; Provisional	99.84
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.83
PHA02859	209	ankyrin repeat protein; Provisional	99.83
PHA02791	284	ankyrin-like protein; Provisional	99.83
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.83
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.82
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.82
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.82
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.82
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.81
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.81
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.81
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.8
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.8
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.8
PF00004	132	AAA: ATPase family associated with various cellula	99.8
PHA02875	413	ankyrin repeat protein; Provisional	99.8
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.79
KOG0508	615	consensus Ankyrin repeat protein [General function	99.79
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.79
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.79
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.79
PHA02878	477	ankyrin repeat protein; Provisional	99.79
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
PHA02878	477	ankyrin repeat protein; Provisional	99.77
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.77
PHA02736	154	Viral ankyrin protein; Provisional	99.77
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.77
CHL00095	821	clpC Clp protease ATP binding subunit	99.77
PHA02874	434	ankyrin repeat protein; Provisional	99.77
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.77
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.77
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.77
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.77
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.77
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.77
PRK10865	857	protein disaggregation chaperone; Provisional	99.77
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.77
PHA02875	413	ankyrin repeat protein; Provisional	99.77
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.76
PLN03025	319	replication factor C subunit; Provisional	99.76
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.76
KOG0510	929	consensus Ankyrin repeat protein [General function	99.76
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.76
PHA02874	434	ankyrin repeat protein; Provisional	99.76
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.76
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.75
PHA03100	480	ankyrin repeat protein; Provisional	99.75
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
PHA02859	209	ankyrin repeat protein; Provisional	99.75
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.75
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.75
PHA02946	446	ankyin-like protein; Provisional	99.75
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.75
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.75
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.74
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.74
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.74
KOG0508	615	consensus Ankyrin repeat protein [General function	99.74
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.74
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	99.74
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.74
PRK12402	337	replication factor C small subunit 2; Reviewed	99.74
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.73
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.73
PHA03100	480	ankyrin repeat protein; Provisional	99.73
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.73
PHA03095	471	ankyrin-like protein; Provisional	99.73
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.73
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.73
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.73
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.73
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.73
PHA02743	166	Viral ankyrin protein; Provisional	99.72
PHA03095	471	ankyrin-like protein; Provisional	99.72
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.72
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	99.72
PHA02798	489	ankyrin-like protein; Provisional	99.72
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.72
PRK04195	482	replication factor C large subunit; Provisional	99.72
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.72
PHA02795	437	ankyrin-like protein; Provisional	99.71
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	99.71
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.71
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.71
KOG0514	452	consensus Ankyrin repeat protein [General function	99.71
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.71
KOG0510	929	consensus Ankyrin repeat protein [General function	99.71
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.7
PHA02876	682	ankyrin repeat protein; Provisional	99.7
PHA02946	446	ankyin-like protein; Provisional	99.7
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.69
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.69
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.69
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.68
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.68
PHA02989	494	ankyrin repeat protein; Provisional	99.68
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.68
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.68
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.68
PHA02989	494	ankyrin repeat protein; Provisional	99.68
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.68
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.68
PHA02798	489	ankyrin-like protein; Provisional	99.68
PHA02876	682	ankyrin repeat protein; Provisional	99.67
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.67
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.67
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.67
PHA02544	316	44 clamp loader, small subunit; Provisional	99.67
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	99.67
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.67
PHA02730	672	ankyrin-like protein; Provisional	99.67
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.66
CHL00095	821	clpC Clp protease ATP binding subunit	99.66
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.66
PRK08084	235	DNA replication initiation factor; Provisional	99.66
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.66
PHA02730	672	ankyrin-like protein; Provisional	99.66
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.66
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.65
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.65
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.65
PRK06893	229	DNA replication initiation factor; Validated	99.65
PHA02795	437	ankyrin-like protein; Provisional	99.65
PHA02736	154	Viral ankyrin protein; Provisional	99.65
PRK10865	857	protein disaggregation chaperone; Provisional	99.65
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.64
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	99.64
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.64
PHA02917	661	ankyrin-like protein; Provisional	99.64
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.63
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	99.63
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.63
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.62
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	99.62
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.62
PHA02917	661	ankyrin-like protein; Provisional	99.62
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.62
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.62
PRK12422	445	chromosomal replication initiation protein; Provis	99.61
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.61
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.61
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.61
PRK15115	444	response regulator GlrR; Provisional	99.61
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.61
PHA02741	169	hypothetical protein; Provisional	99.6
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.6
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.6
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.59
PHA02884	300	ankyrin repeat protein; Provisional	99.59
PRK08727	233	hypothetical protein; Validated	99.59
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.59
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.58
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.57
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.56
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.56
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.56
PRK05642	234	DNA replication initiation factor; Validated	99.55
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.55
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.55
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.55
PRK09087	226	hypothetical protein; Validated	99.55
PRK06620	214	hypothetical protein; Validated	99.54
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.54
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.53
PRK10365	441	transcriptional regulatory protein ZraR; Provision	99.53
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.53
PHA02792	631	ankyrin-like protein; Provisional	99.53
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.52
smart00350	509	MCM minichromosome maintenance proteins.	99.52
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.51
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.51
COG0606	490	Predicted ATPase with chaperone activity [Posttran	99.51
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.5
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.49
KOG0514	452	consensus Ankyrin repeat protein [General function	99.48
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.48
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	99.47
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	99.46
PRK13531	498	regulatory ATPase RavA; Provisional	99.46
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.45
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
PRK09862	506	putative ATP-dependent protease; Provisional	99.45
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.44
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.43
PHA02792	631	ankyrin-like protein; Provisional	99.42
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.42
PRK13765	637	ATP-dependent protease Lon; Provisional	99.41
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.41
PHA02244	383	ATPase-like protein	99.41
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.4
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.4
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.4
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.39
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.39
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	99.39
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.39
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.38
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	99.38
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.37
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.37
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.37
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	99.37
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	99.36
PF07726	131	AAA_3: ATPase family associated with various cellu	99.36
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.34
PRK04132	846	replication factor C small subunit; Provisional	99.34
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	99.33
COG0714	329	MoxR-like ATPases [General function prediction onl	99.33
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.33
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.32
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	99.31
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.29
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.29
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.29
KOG1969	877	consensus DNA replication checkpoint protein CHL12	99.26
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.26
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	99.25
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.24
KOG1514	767	consensus Origin recognition complex, subunit 1, a	99.23
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.23
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.23
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	99.2
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.19
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.17
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	99.17
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.14
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.13
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	99.13
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	99.13
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	99.12
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.1
smart00382	148	AAA ATPases associated with a variety of cellular	99.09
PRK08116	268	hypothetical protein; Validated	99.06
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.06
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.05
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.04
PRK06871	325	DNA polymerase III subunit delta'; Validated	98.98
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.97
KOG2680	454	consensus DNA helicase TIP49, TBP-interacting prot	98.97
COG1241	682	MCM2 Predicted ATPase involved in replication cont	98.95
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	98.94
PRK08699	325	DNA polymerase III subunit delta'; Validated	98.94
PRK06090	319	DNA polymerase III subunit delta'; Validated	98.93
PF13173	128	AAA_14: AAA domain	98.93
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	98.93
PRK07993	334	DNA polymerase III subunit delta'; Validated	98.92
PRK07952	244	DNA replication protein DnaC; Validated	98.92
PRK12377	248	putative replication protein; Provisional	98.89
COG4650	531	RtcR Sigma54-dependent transcription regulator con	98.87
PRK08181	269	transposase; Validated	98.87
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	98.86
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.84
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.83
PRK06835	329	DNA replication protein DnaC; Validated	98.8
KOG0480	764	consensus DNA replication licensing factor, MCM6 c	98.79
PF13606	30	Ank_3: Ankyrin repeat	98.79
KOG0478	804	consensus DNA replication licensing factor, MCM4 c	98.78
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	98.75
PRK06526	254	transposase; Provisional	98.74
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.74
PF05729	166	NACHT: NACHT domain	98.73
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.73
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.69
PF13606	30	Ank_3: Ankyrin repeat	98.67
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.67
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.67
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.66
PRK09183	259	transposase/IS protein; Provisional	98.64
PRK05917	290	DNA polymerase III subunit delta'; Validated	98.62
PRK06921	266	hypothetical protein; Provisional	98.61
KOG0522	560	consensus Ankyrin repeat protein [General function	98.6
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.6
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.6
PRK08939	306	primosomal protein DnaI; Reviewed	98.59
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.56
PRK07276	290	DNA polymerase III subunit delta'; Validated	98.51
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.5
PRK14700	300	recombination factor protein RarA; Provisional	98.5
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	98.44
PRK05818	261	DNA polymerase III subunit delta'; Validated	98.41
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.4
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.38
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.37
KOG0511	516	consensus Ankyrin repeat protein [General function	98.35
PHA00729	226	NTP-binding motif containing protein	98.35
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.34
PRK07132	299	DNA polymerase III subunit delta'; Validated	98.34
KOG0482	721	consensus DNA replication licensing factor, MCM7 c	98.34
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.34
KOG0481	729	consensus DNA replication licensing factor, MCM5 c	98.33
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	98.29
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.27
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.25
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.25
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.22
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	98.17
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	98.16
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	98.14
KOG2384	223	consensus Major histocompatibility complex protein	98.13
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.12
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.12
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.12
KOG0511	516	consensus Ankyrin repeat protein [General function	98.11
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	98.09
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	98.09
PRK08118	167	topology modulation protein; Reviewed	98.07
KOG0522	560	consensus Ankyrin repeat protein [General function	98.06
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.06
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	98.03
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.02
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	98.01
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.99
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.99
KOG0477	854	consensus DNA replication licensing factor, MCM2 c	97.98
PRK13695	174	putative NTPase; Provisional	97.96
PRK10536	262	hypothetical protein; Provisional	97.95
PRK04296	190	thymidine kinase; Provisional	97.94
PHA02624	647	large T antigen; Provisional	97.92
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.92
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.91
PRK07261	171	topology modulation protein; Provisional	97.87
PF14516	331	AAA_35: AAA-like domain	97.86
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	97.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.85
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	97.85
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	97.84
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.84
PRK15455	644	PrkA family serine protein kinase; Provisional	97.82
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.81
KOG2384	223	consensus Major histocompatibility complex protein	97.8
PHA02774	613	E1; Provisional	97.8
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.78
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	97.78
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.77
PRK11823	446	DNA repair protein RadA; Provisional	97.76
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.76
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.75
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.75
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.75
PRK14532	188	adenylate kinase; Provisional	97.71
PTZ00088	229	adenylate kinase 1; Provisional	97.71
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	97.7
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.7
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.69
PRK09376	416	rho transcription termination factor Rho; Provisio	97.68
PF10923	416	DUF2791: P-loop Domain of unknown function (DUF279	97.67
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	97.66
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	97.66
COG1067	647	LonB Predicted ATP-dependent protease [Posttransla	97.65
PRK00131	175	aroK shikimate kinase; Reviewed	97.64
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.64
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.64
PLN02674	244	adenylate kinase	97.63
PLN02200	234	adenylate kinase family protein	97.63
PRK10867	433	signal recognition particle protein; Provisional	97.6
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.6
PRK06581	263	DNA polymerase III subunit delta'; Validated	97.6
cd01128	249	rho_factor Transcription termination factor rho is	97.59
PRK13949	169	shikimate kinase; Provisional	97.58
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.56
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.56
PRK05973	237	replicative DNA helicase; Provisional	97.55
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.54
PF13245	76	AAA_19: Part of AAA domain	97.53
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.52
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.52
PRK06067	234	flagellar accessory protein FlaH; Validated	97.52
PRK06217	183	hypothetical protein; Validated	97.51
PRK00625	173	shikimate kinase; Provisional	97.5
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.5
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	97.5
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.49
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	97.47
PRK06547	172	hypothetical protein; Provisional	97.47
PRK14529	223	adenylate kinase; Provisional	97.46
PRK13947	171	shikimate kinase; Provisional	97.45
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.45
PRK13808	333	adenylate kinase; Provisional	97.45
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.45
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.44
PRK03839	180	putative kinase; Provisional	97.43
PRK06762	166	hypothetical protein; Provisional	97.42
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.41
PLN02459	261	probable adenylate kinase	97.41
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.41
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.4
KOG0479	818	consensus DNA replication licensing factor, MCM3 c	97.39
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.39
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.39
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.38
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.38
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.37
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.37
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.36
PRK13948	182	shikimate kinase; Provisional	97.36
PRK04040	188	adenylate kinase; Provisional	97.34
TIGR00959	428	ffh signal recognition particle protein. This mode	97.34
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	97.33
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.33
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.33
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.32
COG1485	367	Predicted ATPase [General function prediction only	97.31
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.29
smart00487	201	DEXDc DEAD-like helicases superfamily.	97.29
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.29
PRK08233	182	hypothetical protein; Provisional	97.28
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	97.28
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.27
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.26
PRK00279	215	adk adenylate kinase; Reviewed	97.25
TIGR00767	415	rho transcription termination factor Rho. Members	97.25
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.24
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.24
PTZ00202	550	tuzin; Provisional	97.24
PRK14531	183	adenylate kinase; Provisional	97.23
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.22
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.22
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.22
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.21
PRK14530	215	adenylate kinase; Provisional	97.2
PRK14974	336	cell division protein FtsY; Provisional	97.19
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.18
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	97.18
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.18
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.17
COG1855	604	ATPase (PilT family) [General function prediction	97.17

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-42  Score=311.06  Aligned_cols=236  Identities=22%  Similarity=0.322  Sum_probs=204.9

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...+++++|.+..+++|++.   +..|..+++++..++..+|++||||||||||||++||++|+....       .|+.+
T Consensus       147 dvtY~dIGGL~~Qi~EirE~---VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------tFIrv  216 (406)
T COG1222         147 DVTYEDIGGLDEQIQEIREV---VELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------TFIRV  216 (406)
T ss_pred             CCChhhccCHHHHHHHHHHH---hcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-------eEEEe
Confidence            45799999999777777765   888999999999999999999999999999999999999998776       99999


Q ss_pred             ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      .+++++.+|+|+..+.++++|..|+   +|||||||||++..+|..++   ....++++-+||.+||+    ++|-||+|
T Consensus       217 vgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A  296 (406)
T COG1222         217 VGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA  296 (406)
T ss_pred             ccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence            9999999999999999999999885   59999999999999886543   33455666777888887    78999999


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      ||+.++.     ||||+|  |||++|+||.|+.+.|.+||+.+.++.         .+.++++.+.++..+.+       
T Consensus       297 TNR~D~L-----DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM---------~l~~dvd~e~la~~~~g-------  355 (406)
T COG1222         297 TNRPDIL-----DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM---------NLADDVDLELLARLTEG-------  355 (406)
T ss_pred             cCCcccc-----ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc---------cCccCcCHHHHHHhcCC-------
Confidence            8887765     999999  999999999999999999999999876         56788888888877774       


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                        .+|+++++++..|...|.         ++....||++||.+|++++..
T Consensus       356 --~sGAdlkaictEAGm~Ai---------R~~R~~Vt~~DF~~Av~KV~~  394 (406)
T COG1222         356 --FSGADLKAICTEAGMFAI---------RERRDEVTMEDFLKAVEKVVK  394 (406)
T ss_pred             --CchHHHHHHHHHHhHHHH---------HhccCeecHHHHHHHHHHHHh
Confidence              558888999998888762         345578999999999999865

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-40  Score=318.47  Aligned_cols=241  Identities=22%  Similarity=0.267  Sum_probs=213.9

Q ss_pred             HHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCE
Q 013706          155 DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  234 (438)
Q Consensus       155 ~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~  234 (438)
                      +..+..|++|+|++++|..+++.   +.++.++++.+.+++..+|++||||||||||||++||++|++...       +|
T Consensus       427 e~p~v~W~dIGGlE~lK~elq~~---V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~-------nF  496 (693)
T KOG0730|consen  427 EMPNVSWDDIGGLEELKRELQQA---VEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM-------NF  496 (693)
T ss_pred             cCCCCChhhccCHHHHHHHHHHH---HhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-------Ce
Confidence            34456799999999999999987   777889999999999899999999999999999999999999887       99


Q ss_pred             EEeecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          235 TEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       235 ~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      +.+.+.+++++|+|++++.++.+|++|+   +||||+||||++...|+++++....+++++||+.||+    ++|+||+|
T Consensus       497 lsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAA  576 (693)
T KOG0730|consen  497 LSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAA  576 (693)
T ss_pred             eeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEec
Confidence            9999999999999999999999999885   5999999999999999877778899999999999997    57999999


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      ||+.+..     ||||+|  |||..|++|.|+.+.|.+||+.++++.         ++.++++.+.++..+.+++     
T Consensus       577 TNRpd~I-----D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm---------p~~~~vdl~~La~~T~g~S-----  637 (693)
T KOG0730|consen  577 TNRPDMI-----DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM---------PFSEDVDLEELAQATEGYS-----  637 (693)
T ss_pred             cCChhhc-----CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC---------CCCccccHHHHHHHhccCC-----
Confidence            8877665     999999  999999999999999999999999876         4567778777777777655     


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                          |+++.+++++|...+..+.-       +...|+.+||++|++..+|
T Consensus       638 ----GAel~~lCq~A~~~a~~e~i-------~a~~i~~~hf~~al~~~r~  676 (693)
T KOG0730|consen  638 ----GAEIVAVCQEAALLALRESI-------EATEITWQHFEEALKAVRP  676 (693)
T ss_pred             ----hHHHHHHHHHHHHHHHHHhc-------ccccccHHHHHHHHHhhcc
Confidence                88899999999988855432       2567899999999998776

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-39  Score=292.03  Aligned_cols=246  Identities=22%  Similarity=0.266  Sum_probs=207.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      .+|++|.|++++|+-|++.   +..|...++.+..+. .++++||++||||||||+||+++|.+++.       .|+.++
T Consensus       209 ikW~DIagl~~AK~lL~EA---VvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~t-------TFFNVS  277 (491)
T KOG0738|consen  209 IKWDDIAGLHEAKKLLKEA---VVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGT-------TFFNVS  277 (491)
T ss_pred             cChHhhcchHHHHHHHHHH---HhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcC-------eEEEec
Confidence            5799999999999999987   777777787777653 58999999999999999999999999986       999999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC-CchhHHHHHHHHHhhccC-------CCEEEEEe
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG-------GKVVVIFA  307 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~~-------~~v~vi~~  307 (438)
                      .+.+.++|-|++++.++-+|+.|+   +++|||||||+|+++|+++ +|+.++++.+.||.+||+       .++|+|+|
T Consensus       278 sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA  357 (491)
T KOG0738|consen  278 SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA  357 (491)
T ss_pred             hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence            999999999999999999999985   6999999999999998865 688999999999999997       25666666


Q ss_pred             cCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcc
Q 013706          308 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  387 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (438)
                      .|+-+++    .|.||+|||.+.|.+|.|+.+.|..+++..|...         .+.+.+..+.++..+++|+       
T Consensus       358 ATN~PWd----iDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~---------~~~~~~~~~~lae~~eGyS-------  417 (491)
T KOG0738|consen  358 ATNFPWD----IDEALRRRLEKRIYIPLPDAEARSALIKILLRSV---------ELDDPVNLEDLAERSEGYS-------  417 (491)
T ss_pred             ccCCCcc----hHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc---------cCCCCccHHHHHHHhcCCC-------
Confidence            6666665    3899999999999999999999999999998764         4567788888888888777       


Q ss_pred             ccccchHHHHHHHHHHhhccccCCC-------CChhhh-hhccHHHHHHHHHHHHhcC
Q 013706          388 MNGGLVDPMLVNARENLDLRLSFDC-------LDTDEL-RTITLEDLEAGLKLLLRLG  437 (438)
Q Consensus       388 ~n~~~l~~~~~~a~~~~~~r~~~~~-------~~~~~~-~~i~~~d~~~a~~~~~~~~  437 (438)
                        |+++.+++..|...+..|-..+.       ...++. .+++.+||++|+.+++|.+
T Consensus       418 --GaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv  473 (491)
T KOG0738|consen  418 --GADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV  473 (491)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence              66778888888777776532211       112222 4699999999999999864

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-38  Score=301.15  Aligned_cols=249  Identities=22%  Similarity=0.293  Sum_probs=212.3

Q ss_pred             HHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706          156 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  235 (438)
Q Consensus       156 ~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~  235 (438)
                      .....|+++++++.++.++...   +.+|.++++.+..++...|.+|||+||||||||++||++|++.+.       .|+
T Consensus       505 VPdVtW~dIGaL~~vR~eL~~a---I~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~-------NFi  574 (802)
T KOG0733|consen  505 VPDVTWDDIGALEEVRLELNMA---ILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA-------NFI  574 (802)
T ss_pred             cCCCChhhcccHHHHHHHHHHH---HhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC-------ceE
Confidence            3456899999999999999986   778889999999999999999999999999999999999999887       999


Q ss_pred             EeecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          236 EVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       236 ~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      .+.+.+++++|+||++..++..|..|+   +||||+||+|+|.|+|+...++.+.+++|+||..||+    ..|+||+||
T Consensus       575 sVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaAT  654 (802)
T KOG0733|consen  575 SVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAAT  654 (802)
T ss_pred             eecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeec
Confidence            999999999999999999999999986   4999999999999999988888999999999999998    569999999


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH--HHhhHhh
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE--KETTEKQ  384 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  384 (438)
                      |+.++.     |||++|  |||..+.++.|+.+||.+||+...+..       +-.++.+++.+.++...+  +|+    
T Consensus       655 NRPDiI-----DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~-------k~pl~~dVdl~eia~~~~c~gft----  718 (802)
T KOG0733|consen  655 NRPDII-----DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT-------KPPLSSDVDLDEIARNTKCEGFT----  718 (802)
T ss_pred             CCCccc-----chhhcCCCccCceeeecCCCHHHHHHHHHHHhccC-------CCCCCcccCHHHHhhcccccCCc----
Confidence            888775     999999  999999999999999999999998852       336788889888888776  555    


Q ss_pred             hccccccchHHHHHHHHHHhhccccCC---CCChhh----hhhccHHHHHHHHHHHHh
Q 013706          385 RREMNGGLVDPMLVNARENLDLRLSFD---CLDTDE----LRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~---~~~~~~----~~~i~~~d~~~a~~~~~~  435 (438)
                           |++|-.+|.+|.-.|..+...+   ..++..    ...++..||++|++.++|
T Consensus       719 -----GADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~p  771 (802)
T KOG0733|consen  719 -----GADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRP  771 (802)
T ss_pred             -----hhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCC
Confidence                 6667777776665554332211   111111    235889999999999987

>CHL00181 cbbX CbbX; Provisional

Probab=100.00  E-value=2.1e-36  Score=278.01  Aligned_cols=264  Identities=37%  Similarity=0.598  Sum_probs=217.0

Q ss_pred             hhHHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC
Q 013706          152 AKMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP  230 (438)
Q Consensus       152 ~~~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~  230 (438)
                      ..++++...++ +++|++.+|++|++++..+.....+...+.... .++.+++|+||||||||++|+++|+.+...+...
T Consensus        12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~-~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~   90 (287)
T CHL00181         12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSS-NPGLHMSFTGSPGTGKTTVALKMADILYKLGYIK   90 (287)
T ss_pred             cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            34566677776 799999999999999888877777777665432 3566899999999999999999999998888888


Q ss_pred             CCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec
Q 013706          231 TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG  308 (438)
Q Consensus       231 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~  308 (438)
                      .+++++++.+++.+.|+|+++.++.++|+++.++||||||+|.+.+.+.  +++.+.++++.|+..|++  ++++||+++
T Consensus        91 ~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~~~~~vI~ag  168 (287)
T CHL00181         91 KGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQRDDLVVIFAG  168 (287)
T ss_pred             CCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            8899999999999999999999999999999999999999999976432  345677889999999986  568999999


Q ss_pred             CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhh-Hhhhcc
Q 013706          309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRRE  387 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  387 (438)
                      +++.++.++..+|+|++||+.+|.|++|+.+|+.+|+..++.+..       +.+.    +++...+...... .....+
T Consensus       169 ~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~-------~~l~----~~~~~~L~~~i~~~~~~~~~  237 (287)
T CHL00181        169 YKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ-------YQLT----PEAEKALLDYIKKRMEQPLF  237 (287)
T ss_pred             CcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc-------CCCC----hhHHHHHHHHHHHhCCCCCC
Confidence            998888888889999999999999999999999999999998753       2333    3444443332211 112358


Q ss_pred             ccccchHHHHHHHHHHhhccccCC---CCChhhhhhccHHHHHHH
Q 013706          388 MNGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG  429 (438)
Q Consensus       388 ~n~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a  429 (438)
                      ||+|.++++++++..+++.|+...   ..+.+++.+++.+|+.+.
T Consensus       238 GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~~  282 (287)
T CHL00181        238 ANARSVRNALDRARMRQANRIFESGGRVLTKADLVTIEAEDILKS  282 (287)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhCCCHHHHhHH
Confidence            999999999999999999998653   345678899999999753

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=100.00  E-value=3e-36  Score=277.50  Aligned_cols=263  Identities=37%  Similarity=0.582  Sum_probs=218.6

Q ss_pred             hHHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC
Q 013706          153 KMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT  231 (438)
Q Consensus       153 ~~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~  231 (438)
                      .+.+....++ +++|++++|++|.++..++..+..+...|.... .+..+++|+||||||||++|+++|+.+...+....
T Consensus        12 ~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~   90 (284)
T TIGR02880        12 GITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-APTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRK   90 (284)
T ss_pred             cHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCccc
Confidence            4455556676 699999999999999998888877777776542 25568999999999999999999999988888878


Q ss_pred             CCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecC
Q 013706          232 DRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY  309 (438)
Q Consensus       232 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~  309 (438)
                      ++++.++++++++.++|+++.+++++|+++.+|||||||++.+.+.++  +...+.++++.|++.|++  .++++|++++
T Consensus        91 ~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~  168 (284)
T TIGR02880        91 GHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQRDDLVVILAGY  168 (284)
T ss_pred             ceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            899999999999999999999999999999999999999999975432  345667888999999986  4789999999


Q ss_pred             ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh-hHhhhccc
Q 013706          310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET-TEKQRREM  388 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  388 (438)
                      ++.++.++..+|+|++||+..|+||+|+.+|+.+|+.+++++..           ..++.+++..+..+.. ......+|
T Consensus       169 ~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~-----------~~l~~~a~~~L~~~l~~~~~~~~~G  237 (284)
T TIGR02880       169 KDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ-----------YRFSAEAEEAFADYIALRRTQPHFA  237 (284)
T ss_pred             cHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc-----------cccCHHHHHHHHHHHHHhCCCCCCC
Confidence            98888888889999999999999999999999999999998753           2345566666655411 00112399


Q ss_pred             cccchHHHHHHHHHHhhccccCC---CCChhhhhhccHHHHHHH
Q 013706          389 NGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG  429 (438)
Q Consensus       389 n~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a  429 (438)
                      |+|+++|+++++..+++.|+..+   ..+.+++.+|+.+|+.++
T Consensus       238 N~R~lrn~ve~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~~~  281 (284)
T TIGR02880       238 NARSIRNAIDRARLRQANRLFCDLDRVLDKSDLETIDPEDLLAS  281 (284)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence            99999999999999999998653   356788999999999765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-37  Score=292.08  Aligned_cols=218  Identities=20%  Similarity=0.262  Sum_probs=193.9

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|.+++|++....++++++..+    .+++.+..++..+|+++||+||||||||++|++||.+++.       ||+.+
T Consensus       186 nv~f~diGG~d~~~~el~~li~~i----~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~i  254 (802)
T KOG0733|consen  186 NVSFSDIGGLDKTLAELCELIIHI----KHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSI  254 (802)
T ss_pred             CcchhhccChHHHHHHHHHHHHHh----cCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEee
Confidence            347999999999999999986655    5555666677789999999999999999999999999988       99999


Q ss_pred             ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--------CCEEEEE
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--------GKVVVIF  306 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--------~~v~vi~  306 (438)
                      ++.++++.+.|+++++++++|++|.   +||+||||||.+.|+|+..+.++.++++.+||+.||+        ..|+||+
T Consensus       255 sApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg  334 (802)
T KOG0733|consen  255 SAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG  334 (802)
T ss_pred             cchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence            9999999999999999999999995   4999999999999999988899999999999999986        4589999


Q ss_pred             ecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706          307 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  384 (438)
Q Consensus       307 ~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (438)
                      ||++.+..     ||+|||  ||+..|.+..|+..+|.+||+..++.         +.+...++..-++.++.++.    
T Consensus       335 ATnRPDsl-----DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~---------lrl~g~~d~~qlA~lTPGfV----  396 (802)
T KOG0733|consen  335 ATNRPDSL-----DPALRRAGRFDREICLGVPSETAREEILRIICRG---------LRLSGDFDFKQLAKLTPGFV----  396 (802)
T ss_pred             cCCCCccc-----CHHHhccccccceeeecCCchHHHHHHHHHHHhh---------CCCCCCcCHHHHHhcCCCcc----
Confidence            98876654     999999  99999999999999999999999875         45667788889999998776    


Q ss_pred             hccccccchHHHHHHHHHHhhcccc
Q 013706          385 RREMNGGLVDPMLVNARENLDLRLS  409 (438)
Q Consensus       385 ~~~~n~~~l~~~~~~a~~~~~~r~~  409 (438)
                           |++|..++..|..-+..|+.
T Consensus       397 -----GADL~AL~~~Aa~vAikR~l  416 (802)
T KOG0733|consen  397 -----GADLMALCREAAFVAIKRIL  416 (802)
T ss_pred             -----chhHHHHHHHHHHHHHHHHh
Confidence                 77888888888888888864

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.5e-37  Score=298.51  Aligned_cols=246  Identities=22%  Similarity=0.291  Sum_probs=205.7

Q ss_pred             HHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE
Q 013706          157 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  236 (438)
Q Consensus       157 ~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~  236 (438)
                      .+..|+|++|.+.+|..|.+-   +..|.++++++.. +.+...+||||||||||||.+||++|.++..       .|+.
T Consensus       667 PnV~WdDVGGLeevK~eIldT---IqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlS  735 (953)
T KOG0736|consen  667 PNVSWDDVGGLEEVKTEILDT---IQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLS  735 (953)
T ss_pred             CccchhcccCHHHHHHHHHHH---hcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhcee-------eEEe
Confidence            356899999999999999987   6778888888763 4456789999999999999999999999887       9999


Q ss_pred             eecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCC--CCchhHHHHHHHHHhhccC------CCEEEE
Q 013706          237 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA--DDKDYGIEALEEIMSVMDG------GKVVVI  305 (438)
Q Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~--~~~~~~~~~~~~ll~~~~~------~~v~vi  305 (438)
                      +.+.++++.|+|++|+++|++|++|+   +||||+||+|++.|.|+.  ++..+..+++++||..||+      ..|+||
T Consensus       736 VKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFVi  815 (953)
T KOG0736|consen  736 VKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVI  815 (953)
T ss_pred             ecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEE
Confidence            99999999999999999999999875   599999999999998874  4566789999999999987      469999


Q ss_pred             EecCChhHHHHhhhCcCccC--CCCcceeCCCCCH-HHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhH
Q 013706          306 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE  382 (438)
Q Consensus       306 ~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~-~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (438)
                      +|||+.+..     ||+|+|  |||+.+++.+... +.+..+|+...++         ++++++++...+++.+.-    
T Consensus       816 GATNRPDLL-----DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk---------FkLdedVdL~eiAk~cp~----  877 (953)
T KOG0736|consen  816 GATNRPDLL-----DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK---------FKLDEDVDLVEIAKKCPP----  877 (953)
T ss_pred             ecCCCcccc-----ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH---------ccCCCCcCHHHHHhhCCc----
Confidence            999888775     999999  9999999988865 5667788776665         477888887777776653    


Q ss_pred             hhhccccccchHHHHHHHHHHhhccccC----CCC----ChhhhhhccHHHHHHHHHHHHh
Q 013706          383 KQRREMNGGLVDPMLVNARENLDLRLSF----DCL----DTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       383 ~~~~~~n~~~l~~~~~~a~~~~~~r~~~----~~~----~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                          ...|+++..++-.|.-.|+.|...    +..    .......|+++||.+|+++++|
T Consensus       878 ----~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P  934 (953)
T KOG0736|consen  878 ----NMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP  934 (953)
T ss_pred             ----CCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence                355888999999888888877532    211    1223457999999999999987

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=100.00  E-value=2.3e-35  Score=270.22  Aligned_cols=253  Identities=37%  Similarity=0.571  Sum_probs=210.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++++|++.+|++|+++..++.....+...|.... +...|++|+||||||||++|+++|+.+...+......+++++
T Consensus         3 ~~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~   81 (261)
T TIGR02881         3 RELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE   81 (261)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec
Confidence            5688999999999999999988887777777666543 356789999999999999999999999877877788999999


Q ss_pred             cccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHH
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~  316 (438)
                      ++++.+.|+|+++.+++++|+.+.++||||||+|.|.+..   ++....++++.|++.|++  +.+++|+++++..++.+
T Consensus        82 ~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~  158 (261)
T TIGR02881        82 RADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYF  158 (261)
T ss_pred             HHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCC---ccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHH
Confidence            9999999999999999999999999999999999997422   234567788999999986  56788888888777777


Q ss_pred             hhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhh---Hhhhccccccch
Q 013706          317 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT---EKQRREMNGGLV  393 (438)
Q Consensus       317 ~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~n~~~l  393 (438)
                      ...+|++++||+..|.||+|+.+|+.+|+++++.+.       ++    .++++++..+......   .....+||+|.+
T Consensus       159 ~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~-------~~----~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~  227 (261)
T TIGR02881       159 LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER-------EY----KLTEEAKWKLREHLYKVDQLSSREFSNARYV  227 (261)
T ss_pred             HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc-------CC----ccCHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence            777999999999999999999999999999998763       22    3455666655443322   234568999999


Q ss_pred             HHHHHHHHHHhhcccc-CCCCChhhhhhccHHHH
Q 013706          394 DPMLVNARENLDLRLS-FDCLDTDELRTITLEDL  426 (438)
Q Consensus       394 ~~~~~~a~~~~~~r~~-~~~~~~~~~~~i~~~d~  426 (438)
                      +|+++.|.++++.|+. .+..+.+++..++.+||
T Consensus       228 ~n~~e~a~~~~~~r~~~~~~~~~~~~~~l~~~d~  261 (261)
T TIGR02881       228 RNIIEKAIRRQAVRLLDKSDYSKEDLMLLKKEDL  261 (261)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCHHHHhccChhhC
Confidence            9999999999999975 45566788888998886

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=100.00  E-value=9.4e-36  Score=254.69  Aligned_cols=231  Identities=24%  Similarity=0.308  Sum_probs=187.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++++|++..|+.-+-+++++..|.+..       .-.|++||||||||||||++||++|++...       |++.+.
T Consensus       118 it~ddViGqEeAK~kcrli~~yLenPe~Fg-------~WAPknVLFyGppGTGKTm~Akalane~kv-------p~l~vk  183 (368)
T COG1223         118 ITLDDVIGQEEAKRKCRLIMEYLENPERFG-------DWAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLLLVK  183 (368)
T ss_pred             ccHhhhhchHHHHHHHHHHHHHhhChHHhc-------ccCcceeEEECCCCccHHHHHHHHhcccCC-------ceEEec
Confidence            468999999999999888888887776553       346899999999999999999999999887       999999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC-chhHHHHHHHHHhhccC----CCEEEEEecCC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMDG----GKVVVIFAGYS  310 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~~~~----~~v~vi~~~~~  310 (438)
                      ++.++++++|+....++++++.|   .+||+||||+|.+.-+|.-.+ .....+++|+||+.||+    ..|+.|++||+
T Consensus       184 at~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~  263 (368)
T COG1223         184 ATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNR  263 (368)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCC
Confidence            99999999999999999999877   469999999999987664221 22345888999999997    45899999887


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      ..+.     ||++++||...|+|..|+.+|+.+|++.++++.         .+..+...+.+.+.+.+.+         |
T Consensus       264 p~~L-----D~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~---------Plpv~~~~~~~~~~t~g~S---------g  320 (368)
T COG1223         264 PELL-----DPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF---------PLPVDADLRYLAAKTKGMS---------G  320 (368)
T ss_pred             hhhc-----CHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC---------CCccccCHHHHHHHhCCCC---------c
Confidence            7665     999999999999999999999999999999876         3445566777777777554         6


Q ss_pred             cchHHHHH-HHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          391 GLVDPMLV-NARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       391 ~~l~~~~~-~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      |++..-+- .|..+|   +      .++...|+.+|++.|+++.++
T Consensus       321 RdikekvlK~aLh~A---i------~ed~e~v~~edie~al~k~r~  357 (368)
T COG1223         321 RDIKEKVLKTALHRA---I------AEDREKVEREDIEKALKKERK  357 (368)
T ss_pred             hhHHHHHHHHHHHHH---H------HhchhhhhHHHHHHHHHhhcc
Confidence            66654433 333333   1      234567899999999998554

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-35  Score=275.80  Aligned_cols=233  Identities=20%  Similarity=0.287  Sum_probs=198.3

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ..+|+++.|.++.|+++++++..++.|.+...+|    .+-|++|||.||||||||+|||++|-+.+.       ||+..
T Consensus       300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLG----GKLPKGVLLvGPPGTGKTlLARAvAGEA~V-------PFF~~  368 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLG----GKLPKGVLLVGPPGTGKTLLARAVAGEAGV-------PFFYA  368 (752)
T ss_pred             ccccccccChHHHHHHHHHHHHHhcCcHHhhhcc----CcCCCceEEeCCCCCchhHHHHHhhcccCC-------CeEec
Confidence            4569999999999999999999998887776655    456899999999999999999999998877       99999


Q ss_pred             ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCC
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS  310 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~  310 (438)
                      +++++-..++|...+.++++|..|+   +|||||||||++..+|......+.+..+|+||..||+    ..|+||+|||.
T Consensus       369 sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf  448 (752)
T KOG0734|consen  369 SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF  448 (752)
T ss_pred             cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence            9999999999999999999999885   5999999999999988765555899999999999997    45889998765


Q ss_pred             hhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706          311 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  388 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (438)
                      .+..     |+||.|  |||++|.+|.|+...|.+||+.|+.+.         .++.++++..++   ++..      +.
T Consensus       449 pe~L-----D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki---------~~~~~VD~~iiA---RGT~------GF  505 (752)
T KOG0734|consen  449 PEAL-----DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI---------PLDEDVDPKIIA---RGTP------GF  505 (752)
T ss_pred             hhhh-----hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC---------CcccCCCHhHhc---cCCC------CC
Confidence            5543     899988  999999999999999999999999875         455677776654   4443      56


Q ss_pred             cccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          389 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       389 n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      +|++|.|+|++|.-+|         ..+....|++.|++-|-++|
T Consensus       506 sGAdLaNlVNqAAlkA---------a~dga~~VtM~~LE~akDrI  541 (752)
T KOG0734|consen  506 SGADLANLVNQAALKA---------AVDGAEMVTMKHLEFAKDRI  541 (752)
T ss_pred             chHHHHHHHHHHHHHH---------HhcCcccccHHHHhhhhhhe
Confidence            6899999999988877         23445678888888877765

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-35  Score=254.66  Aligned_cols=184  Identities=19%  Similarity=0.254  Sum_probs=164.9

Q ss_pred             HHHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706          154 MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  233 (438)
Q Consensus       154 ~~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~  233 (438)
                      .+....+|+++.|++..|+.|++.   +..|-+.+.++..- ..+++++||||||||||+.||+++|.+.++       .
T Consensus       125 ~EKPNVkWsDVAGLE~AKeALKEA---VILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------T  193 (439)
T KOG0739|consen  125 REKPNVKWSDVAGLEGAKEALKEA---VILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANS-------T  193 (439)
T ss_pred             ccCCCCchhhhccchhHHHHHHhh---eeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------c
Confidence            344567899999999999999987   77888888887754 358899999999999999999999999886       9


Q ss_pred             EEEeecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEE
Q 013706          234 VTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVI  305 (438)
Q Consensus       234 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi  305 (438)
                      |+.++.++++++|+|++++.++.+|+.|+   ++||||||||+++.+|..++++.++++...||-+|++     ..+.|+
T Consensus       194 FFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL  273 (439)
T KOG0739|consen  194 FFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL  273 (439)
T ss_pred             eEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence            99999999999999999999999999885   5999999999999999999999999999999999986     458888


Q ss_pred             EecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccc
Q 013706          306 FAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       306 ~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      +||+-....     |.++||||+.+|++|.|....|..+++.++....
T Consensus       274 gATNiPw~L-----DsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp  316 (439)
T KOG0739|consen  274 GATNIPWVL-----DSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTP  316 (439)
T ss_pred             ecCCCchhH-----HHHHHHHhhcceeccCCcHHHhhhhheeccCCCc
Confidence            888776665     8899999999999999999999999999998754

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-34  Score=241.42  Aligned_cols=235  Identities=21%  Similarity=0.295  Sum_probs=190.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..++-+.|.+..+++|++.   +..|-++++++..++...|+++|||||||||||.+||++|+....       .|+.++
T Consensus       144 StYeMiGgLd~QIkeIkEV---IeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c-------~firvs  213 (404)
T KOG0728|consen  144 STYEMIGGLDKQIKEIKEV---IELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVS  213 (404)
T ss_pred             cHHHHhccHHHHHHHHHHH---HhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce-------EEEEec
Confidence            4566777888666666655   778889999999999999999999999999999999999998876       899999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      +++++.+|+|+....++++|-.|+   ++|||.||||++.+.|..+   +++...+..-.||.++|+    +++-||+||
T Consensus       214 gselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimat  293 (404)
T KOG0728|consen  214 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMAT  293 (404)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEec
Confidence            999999999999999999998774   5999999999999877533   234445556677777776    679999997


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      ++-++.     ||+|+|  |+|++|+||+|+.+.+.+|++.+-++..         +.-.++...+++.+.         
T Consensus       294 nridil-----d~allrpgridrkiefp~p~e~ar~~ilkihsrkmn---------l~rgi~l~kiaekm~---------  350 (404)
T KOG0728|consen  294 NRIDIL-----DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN---------LTRGINLRKIAEKMP---------  350 (404)
T ss_pred             cccccc-----cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc---------hhcccCHHHHHHhCC---------
Confidence            776554     999998  9999999999999999999998887653         345566555555554         


Q ss_pred             cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      .+.|+++..++-.|...|         -++....+|.+||+-|+.++..
T Consensus       351 gasgaevk~vcteagm~a---------lrerrvhvtqedfemav~kvm~  390 (404)
T KOG0728|consen  351 GASGAEVKGVCTEAGMYA---------LRERRVHVTQEDFEMAVAKVMQ  390 (404)
T ss_pred             CCccchhhhhhhhhhHHH---------HHHhhccccHHHHHHHHHHHHh
Confidence            455778888887776655         1234467999999999988764

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-34  Score=243.09  Aligned_cols=235  Identities=20%  Similarity=0.278  Sum_probs=195.8

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...+.++.|++-.|+++++.   +..|..+.+++..++..+|.++|+|||||||||++|+++|+....       .|+.+
T Consensus       151 dvsy~diggld~qkqeirea---velplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a-------~firv  220 (408)
T KOG0727|consen  151 DVSYADIGGLDVQKQEIREA---VELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA-------AFIRV  220 (408)
T ss_pred             CccccccccchhhHHHHHHH---HhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch-------heeee
Confidence            35688999999999999987   667788888888899999999999999999999999999996655       89999


Q ss_pred             ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      .+++++.+|.|+....+++.|..|+   ++|+||||+|++..+|-..   ......+++-.||.+||+    .++-||++
T Consensus       221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima  300 (408)
T KOG0727|consen  221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA  300 (408)
T ss_pred             ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEe
Confidence            9999999999999999999999885   5999999999999876433   345566778888999987    56899999


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      |++.+..     ||+|+|  |+|++|+||.|+..++.-++.....+.         .++++++.+.+...-.        
T Consensus       301 tnradtl-----dpallrpgrldrkiefplpdrrqkrlvf~titskm---------~ls~~vdle~~v~rpd--------  358 (408)
T KOG0727|consen  301 TNRADTL-----DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM---------NLSDEVDLEDLVARPD--------  358 (408)
T ss_pred             cCccccc-----CHhhcCCccccccccCCCCchhhhhhhHHhhhhcc---------cCCcccCHHHHhcCcc--------
Confidence            8876664     999998  999999999999999999998888765         4567777665443333        


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                       .-.++++..+++.|...+.         +.....|...||++|++..-
T Consensus       359 -kis~adi~aicqeagm~av---------r~nryvvl~kd~e~ay~~~v  397 (408)
T KOG0727|consen  359 -KISGADINAICQEAGMLAV---------RENRYVVLQKDFEKAYKTVV  397 (408)
T ss_pred             -ccchhhHHHHHHHHhHHHH---------HhcceeeeHHHHHHHHHhhc
Confidence             4457888999998887762         23456789999999988653

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-34  Score=257.65  Aligned_cols=259  Identities=23%  Similarity=0.304  Sum_probs=208.0

Q ss_pred             hHHHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCC-CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC
Q 013706          153 KMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVG-ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT  231 (438)
Q Consensus       153 ~~~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~  231 (438)
                      ...+...+|++|.|.+.+++++++.   +..|.++++++.... ..+++++|||||||||||++|+++|++.+.      
T Consensus        83 ~p~~I~v~f~DIggLe~v~~~L~e~---VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga------  153 (386)
T KOG0737|consen   83 PPSEIGVSFDDIGGLEEVKDALQEL---VILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA------  153 (386)
T ss_pred             chhhceeehhhccchHHHHHHHHHH---HhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC------
Confidence            4556778999999999999999987   788889998885322 248899999999999999999999999887      


Q ss_pred             CCEEEeecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCE
Q 013706          232 DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKV  302 (438)
Q Consensus       232 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v  302 (438)
                       .|+.+..+.+.++|+|++++.++.+|..|   +++||||||+|++...|++++++....+-++|...+|+      ..|
T Consensus       154 -~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rV  232 (386)
T KOG0737|consen  154 -NFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERV  232 (386)
T ss_pred             -CcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceE
Confidence             89999999999999999999999999887   56999999999999999888899999999999999987      247


Q ss_pred             EEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhH
Q 013706          303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE  382 (438)
Q Consensus       303 ~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (438)
                      .|++||++....     |.|+.||++.+++++.|+.++|..|++.+|+.+         ++.++++...++..+.+|+|.
T Consensus       233 lVlgATNRP~Dl-----DeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e---------~~e~~vD~~~iA~~t~GySGS  298 (386)
T KOG0737|consen  233 LVLGATNRPFDL-----DEAIIRRLPRRFHVGLPDAEQRRKILKVILKKE---------KLEDDVDLDEIAQMTEGYSGS  298 (386)
T ss_pred             EEEeCCCCCccH-----HHHHHHhCcceeeeCCCchhhHHHHHHHHhccc---------ccCcccCHHHHHHhcCCCcHH
Confidence            777776544332     888999999999999999999999999999986         456888999999999999877


Q ss_pred             hhhccccccchHHHHHHHHHH--hh---ccccCCCCC-----hhhhhhccHHHHHHHHHHHHh
Q 013706          383 KQRREMNGGLVDPMLVNAREN--LD---LRLSFDCLD-----TDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       383 ~~~~~~n~~~l~~~~~~a~~~--~~---~r~~~~~~~-----~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      |+...|.-+.+..+-+-....  ..   ..+......     .-..+.++.+||..|...+.+
T Consensus       299 DLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~  361 (386)
T KOG0737|consen  299 DLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSA  361 (386)
T ss_pred             HHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhh
Confidence            776666555555554433332  00   000000000     112578999999999985543

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.7e-33  Score=236.44  Aligned_cols=236  Identities=24%  Similarity=0.333  Sum_probs=192.0

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      .+.++++.|.+   ++|.++++.+..|..+++.+..++..+|+++|+|||||||||++||+.|...+.       .|+.+
T Consensus       167 tE~YsDiGGld---kQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-------TFLKL  236 (424)
T KOG0652|consen  167 TEQYSDIGGLD---KQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA-------TFLKL  236 (424)
T ss_pred             cccccccccHH---HHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc-------hHHHh
Confidence            35688999998   555666666888999999999999999999999999999999999999998776       89999


Q ss_pred             ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHH---HHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIE---ALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~---~~~~ll~~~~~----~~v~vi~~  307 (438)
                      .+..++..|+|+..+.++.+|..|+   ++||||||+|.+..+|..++..-.++   ..-.||.++|+    .++-||++
T Consensus       237 AgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAA  316 (424)
T KOG0652|consen  237 AGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA  316 (424)
T ss_pred             cchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEee
Confidence            9999999999999999999998875   59999999999999887554333334   44455666665    57999999


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      |++-++.     ||+|+|  |++++|+||.|+.+.|.+|+..+.++..         .++++..+.++.-+.        
T Consensus       317 TNRvDiL-----DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn---------v~~DvNfeELaRsTd--------  374 (424)
T KOG0652|consen  317 TNRVDIL-----DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN---------VSDDVNFEELARSTD--------  374 (424)
T ss_pred             ccccccc-----CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC---------CCCCCCHHHHhhccc--------
Confidence            7776664     999988  9999999999999999999999888763         456666555443332        


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                       ..||+.++.++-.|...+..|         +...|+-+||-+++-.++.
T Consensus       375 -dFNGAQcKAVcVEAGMiALRr---------~atev~heDfmegI~eVqa  414 (424)
T KOG0652|consen  375 -DFNGAQCKAVCVEAGMIALRR---------GATEVTHEDFMEGILEVQA  414 (424)
T ss_pred             -ccCchhheeeehhhhHHHHhc---------ccccccHHHHHHHHHHHHH
Confidence             678999999988888777555         3356889999999887764

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-32  Score=273.04  Aligned_cols=240  Identities=24%  Similarity=0.345  Sum_probs=199.7

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|++.+++.+++.+   .++..+++.+...+..++.++|||||||||||++|+++|.++..       +|+.+
T Consensus       238 ~v~~~diggl~~~k~~l~e~v---~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~-------~fi~v  307 (494)
T COG0464         238 DVTLDDIGGLEEAKEELKEAI---ETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS-------RFISV  307 (494)
T ss_pred             CcceehhhcHHHHHHHHHHHH---HhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC-------eEEEe
Confidence            457899999999999999984   44556666555555678889999999999999999999998776       99999


Q ss_pred             ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCC
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS  310 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~  310 (438)
                      ..+++.++|+|+++++++.+|..|+   +|||||||+|++.+.++.+.+....+++++|+..|++    ..|+||++|+.
T Consensus       308 ~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~  387 (494)
T COG0464         308 KGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR  387 (494)
T ss_pred             eCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence            9999999999999999999999986   6999999999999999877776678999999999985    56888888776


Q ss_pred             hhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706          311 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  388 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (438)
                      ....     ||+++|  ||+.+|.||+|+.+++.+|++.++.+...       .+..+++.+.+...+.+         .
T Consensus       388 p~~l-----d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~-------~~~~~~~~~~l~~~t~~---------~  446 (494)
T COG0464         388 PDDL-----DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP-------PLAEDVDLEELAEITEG---------Y  446 (494)
T ss_pred             cccc-----CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC-------cchhhhhHHHHHHHhcC---------C
Confidence            6654     999999  99999999999999999999999986431       23345566666665554         4


Q ss_pred             cccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHhc
Q 013706          389 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       389 n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~~  436 (438)
                      .++++..++..|...+..+..        ...++.+||.+|++.+.|.
T Consensus       447 sgadi~~i~~ea~~~~~~~~~--------~~~~~~~~~~~a~~~~~p~  486 (494)
T COG0464         447 SGADIAALVREAALEALREAR--------RREVTLDDFLDALKKIKPS  486 (494)
T ss_pred             CHHHHHHHHHHHHHHHHHHhc--------cCCccHHHHHHHHHhcCCC
Confidence            478889999999888743321        4579999999999998774

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.3e-32  Score=261.82  Aligned_cols=217  Identities=20%  Similarity=0.285  Sum_probs=187.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      -.|+++.|+.++++.+++.   +..|.+++..+...+.+.+.++|||||||||||.+|.++|...+.       .|+.+.
T Consensus       664 i~w~digg~~~~k~~l~~~---i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvK  733 (952)
T KOG0735|consen  664 IRWEDIGGLFEAKKVLEEV---IEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVK  733 (952)
T ss_pred             CCceecccHHHHHHHHHHH---HhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEec
Confidence            5699999999999999998   666789999998888888999999999999999999999998776       899999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCCh
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE  311 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~  311 (438)
                      +.+++++|+|.++..++.+|++|   ++||||+||+|++.|+|+-++.....+++|+||++||+    ..|.|++||++.
T Consensus       734 GPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp  813 (952)
T KOG0735|consen  734 GPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRP  813 (952)
T ss_pred             CHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCc
Confidence            99999999999999999999987   57999999999999999988888999999999999998    468888888777


Q ss_pred             hHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706          312 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  389 (438)
Q Consensus       312 ~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  389 (438)
                      ++.     ||||+|  |+|+.+.-+.|+..||.+|++...+..         .++..++.+-++..+.+++         
T Consensus       814 dli-----DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~---------~~~~~vdl~~~a~~T~g~t---------  870 (952)
T KOG0735|consen  814 DLI-----DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL---------LKDTDVDLECLAQKTDGFT---------  870 (952)
T ss_pred             ccc-----CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc---------CCccccchHHHhhhcCCCc---------
Confidence            664     999999  999999999999999999999877654         3456677777777777666         


Q ss_pred             ccchHHHHHHHHHHhhccc
Q 013706          390 GGLVDPMLVNARENLDLRL  408 (438)
Q Consensus       390 ~~~l~~~~~~a~~~~~~r~  408 (438)
                      |+++..++..|...++.++
T Consensus       871 gADlq~ll~~A~l~avh~~  889 (952)
T KOG0735|consen  871 GADLQSLLYNAQLAAVHEI  889 (952)
T ss_pred             hhhHHHHHHHHHHHHHHHH
Confidence            5666677766655554443

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.98  E-value=2.4e-31  Score=259.32  Aligned_cols=235  Identities=21%  Similarity=0.318  Sum_probs=183.8

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+|+.+.+......  .....    .+...|+++|||||||||||++|+++|++++.       +++.++
T Consensus       225 ~~~~dvgGl~~lK~~l~~~~~~~~--~~~~~----~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~-------~~~~l~  291 (489)
T CHL00195        225 EKISDIGGLDNLKDWLKKRSTSFS--KQASN----YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL-------PLLRLD  291 (489)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHhh--HHHHh----cCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEE
Confidence            468899999999999987543321  11122    34457899999999999999999999999876       899999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCC-CCchhHHHHHHHHHhhccC--CCEEEEEecCChh
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKA-DDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP  312 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~  312 (438)
                      .+.+.++|+|+++.+++++|+.|   .+|||||||||++.+.+++ +.+....++++.|+..|++  ..++||++|+...
T Consensus       292 ~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~  371 (489)
T CHL00195        292 VGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID  371 (489)
T ss_pred             hHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence            99999999999999999999865   5699999999999876543 3455677899999999975  4577777765433


Q ss_pred             HHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          313 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       313 ~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                        .+   ||+++|  ||+.+|+++.|+.++|.+|++.++.+...       ....+.+.+.++..+.         ..+|
T Consensus       372 --~L---d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~-------~~~~~~dl~~La~~T~---------GfSG  430 (489)
T CHL00195        372 --LL---PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP-------KSWKKYDIKKLSKLSN---------KFSG  430 (489)
T ss_pred             --hC---CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC-------CcccccCHHHHHhhcC---------CCCH
Confidence              33   899987  99999999999999999999999987421       1112344555555555         4557


Q ss_pred             cchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHhcC
Q 013706          391 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLG  437 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~~~  437 (438)
                      +++.+++..|...+..          +.+.++.+||.+|++.+.|+-
T Consensus       431 AdI~~lv~eA~~~A~~----------~~~~lt~~dl~~a~~~~~Pls  467 (489)
T CHL00195        431 AEIEQSIIEAMYIAFY----------EKREFTTDDILLALKQFIPLA  467 (489)
T ss_pred             HHHHHHHHHHHHHHHH----------cCCCcCHHHHHHHHHhcCCCc
Confidence            8888998888877632          225689999999999999973

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.5e-31  Score=263.16  Aligned_cols=234  Identities=22%  Similarity=0.312  Sum_probs=195.1

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|+|+.|.+++|++|.+++..+..|.++.++|    +..|+++||.||||||||+|||++|.+.+.       ||+.+
T Consensus       307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lG----AKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~sv  375 (774)
T KOG0731|consen  307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELG----AKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSV  375 (774)
T ss_pred             CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcC----CcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeee
Confidence            3679999999999999999999998888887755    568899999999999999999999999887       99999


Q ss_pred             ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCC----CCchhHHHHHHHHHhhccC----CCEEEEE
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA----DDKDYGIEALEEIMSVMDG----GKVVVIF  306 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~~~~----~~v~vi~  306 (438)
                      ++++++..++|-...+++++|..|+   +||+||||||.+...|++    ..+......+|+||..||+    +.|+|++
T Consensus       376 SGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a  455 (774)
T KOG0731|consen  376 SGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLA  455 (774)
T ss_pred             chHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEe
Confidence            9999999999999999999999986   499999999999998852    3456667889999999997    5689999


Q ss_pred             ecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706          307 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  384 (438)
Q Consensus       307 ~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (438)
                      +|++.++.     ||||+|  |||++|.++.|+..+|.+|++.++++..         +.  .++..+..++....    
T Consensus       456 ~tnr~d~l-----d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---------~~--~e~~dl~~~a~~t~----  515 (774)
T KOG0731|consen  456 ATNRPDIL-----DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---------LD--DEDVDLSKLASLTP----  515 (774)
T ss_pred             ccCCcccc-----CHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---------CC--cchhhHHHHHhcCC----
Confidence            98877775     999999  9999999999999999999999998753         22  22333444444332    


Q ss_pred             hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          385 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                        ...|++|.|+++.|.-.++.         .....|+.+||..|++.+
T Consensus       516 --gf~gadl~n~~neaa~~a~r---------~~~~~i~~~~~~~a~~Rv  553 (774)
T KOG0731|consen  516 --GFSGADLANLCNEAALLAAR---------KGLREIGTKDLEYAIERV  553 (774)
T ss_pred             --CCcHHHHHhhhhHHHHHHHH---------hccCccchhhHHHHHHHH
Confidence              45578888888887776633         345678889999888843

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.97  E-value=2.8e-31  Score=253.76  Aligned_cols=236  Identities=21%  Similarity=0.283  Sum_probs=189.0

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|++.++++|++.+   ..+..+++.+...+..+|+++|||||||||||++|+++|+.+..       +|+.+
T Consensus       141 ~v~~~digGl~~~k~~l~~~v---~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~-------~fi~i  210 (398)
T PTZ00454        141 DVTYSDIGGLDIQKQEIREAV---ELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA-------TFIRV  210 (398)
T ss_pred             CCCHHHcCCHHHHHHHHHHHH---HHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence            457999999999999999874   44455555555566678999999999999999999999998765       88999


Q ss_pred             ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      .++.+..+|+|+++..++.+|..|   .++||||||+|.+.+++.+.   .+....+++..|+..|++    ..++||++
T Consensus       211 ~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~a  290 (398)
T PTZ00454        211 VGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA  290 (398)
T ss_pred             ehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence            999999999999999999999876   46999999999998876432   233456778889988875    46788888


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      |+...  .+   ||+++|  ||+.+|+|+.|+.++|.+|++.++.+.         .+..+++.+.+...+.        
T Consensus       291 TN~~d--~L---DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~---------~l~~dvd~~~la~~t~--------  348 (398)
T PTZ00454        291 TNRAD--TL---DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM---------NLSEEVDLEDFVSRPE--------  348 (398)
T ss_pred             cCCch--hC---CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC---------CCCcccCHHHHHHHcC--------
Confidence            76543  33   999887  999999999999999999999988764         3445566666655544        


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                       ..+++++.+++..|...+..+         +...|+.+||.+|++.+..
T Consensus       349 -g~sgaDI~~l~~eA~~~A~r~---------~~~~i~~~df~~A~~~v~~  388 (398)
T PTZ00454        349 -KISAADIAAICQEAGMQAVRK---------NRYVILPKDFEKGYKTVVR  388 (398)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHHh
Confidence             455888999999998877433         2357999999999999754

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.7e-32  Score=237.08  Aligned_cols=235  Identities=19%  Similarity=0.320  Sum_probs=188.8

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      .+.+.++.|.++.+++|++.   +..|..+++.+..++..+|++|+|||+||||||++|+++|+....       .|+.+
T Consensus       181 ~Ety~diGGle~QiQEiKEs---vELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA-------TFlRv  250 (440)
T KOG0726|consen  181 QETYADIGGLESQIQEIKES---VELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA-------TFLRV  250 (440)
T ss_pred             hhhhcccccHHHHHHHHHHh---hcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch-------hhhhh
Confidence            46799999999877777765   778888899988899999999999999999999999999997655       89999


Q ss_pred             ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHH---HHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALE---EIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~---~ll~~~~~----~~v~vi~~  307 (438)
                      -+++++.+|.|+..+.++++|.-|   .++|+||||||.+..+|..+++...+++..   .||.++|+    ++|-||+|
T Consensus       251 vGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimA  330 (440)
T KOG0726|consen  251 VGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA  330 (440)
T ss_pred             hhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEe
Confidence            999999999999999999999877   469999999999999887554443344444   55556665    78999999


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      |+.  ++.+   ||+|.|  |+|++|+||.|+..-+..||..+..+.         .+..+++.+.+..--.        
T Consensus       331 Tnr--ie~L---DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M---------tl~~dVnle~li~~kd--------  388 (440)
T KOG0726|consen  331 TNR--IETL---DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM---------TLAEDVNLEELIMTKD--------  388 (440)
T ss_pred             ccc--cccc---CHhhcCCCccccccccCCCchhhhceeEEEeeccc---------chhccccHHHHhhccc--------
Confidence            655  4444   999998  999999999999999999998777654         5556666554433222        


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                       ..+|+++..++-.|-..|         -++....++.+||..|.+.+.
T Consensus       389 -dlSGAdIkAictEaGllA---------lRerRm~vt~~DF~ka~e~V~  427 (440)
T KOG0726|consen  389 -DLSGADIKAICTEAGLLA---------LRERRMKVTMEDFKKAKEKVL  427 (440)
T ss_pred             -ccccccHHHHHHHHhHHH---------HHHHHhhccHHHHHHHHHHHH
Confidence             455788888887776655         123456899999999998875

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.6e-32  Score=233.67  Aligned_cols=235  Identities=20%  Similarity=0.264  Sum_probs=188.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+.++.|-.+.++.+++.   +..|..+++.+..++..+|+++|+|||||||||++||++|+....       +|+.+-
T Consensus       174 vty~dvggckeqieklrev---ve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfirvi  243 (435)
T KOG0729|consen  174 VTYSDVGGCKEQIEKLREV---VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRVI  243 (435)
T ss_pred             cccccccchHHHHHHHHHH---HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEeeh
Confidence            4677888876555555554   777888888888899999999999999999999999999986655       899999


Q ss_pred             cccccccccccchHHHHHHHHHccC---cEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~~---~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      +++++.+|+|+....++++|+.|+.   ||||+||||.+...|-.++   .....+..-.|+.++|+    +++-|++||
T Consensus       244 gselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmat  323 (435)
T KOG0729|consen  244 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMAT  323 (435)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeec
Confidence            9999999999999999999999965   9999999999998765432   33344444566666776    789999998


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      ++....     ||+|+|  |++++++|..|+.+.+..|++.+.+..         ...-++..+.++.++...+      
T Consensus       324 nrpdtl-----dpallrpgrldrkvef~lpdlegrt~i~kihaksm---------sverdir~ellarlcpnst------  383 (435)
T KOG0729|consen  324 NRPDTL-----DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM---------SVERDIRFELLARLCPNST------  383 (435)
T ss_pred             CCCCCc-----CHhhcCCcccccceeccCCcccccceeEEEecccc---------ccccchhHHHHHhhCCCCc------
Confidence            877665     999998  999999999999999999999887764         3334566677777777655      


Q ss_pred             cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                         |+++++++-.|..-|.         .......|.+||.+|+.++.+
T Consensus       384 ---gaeirsvcteagmfai---------rarrk~atekdfl~av~kvvk  420 (435)
T KOG0729|consen  384 ---GAEIRSVCTEAGMFAI---------RARRKVATEKDFLDAVNKVVK  420 (435)
T ss_pred             ---chHHHHHHHHhhHHHH---------HHHhhhhhHHHHHHHHHHHHH
Confidence               6778888877766541         223456889999999988754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.97  E-value=3.6e-31  Score=275.33  Aligned_cols=246  Identities=22%  Similarity=0.303  Sum_probs=195.5

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|++.+++++.+.+.   .+..+++.+...+..++.++|||||||||||++|+++|+++..       +|+.+
T Consensus       449 ~~~~~di~g~~~~k~~l~~~v~---~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~-------~fi~v  518 (733)
T TIGR01243       449 NVRWSDIGGLEEVKQELREAVE---WPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA-------NFIAV  518 (733)
T ss_pred             ccchhhcccHHHHHHHHHHHHH---hhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence            3478999999999999998744   4445555555556678899999999999999999999998865       89999


Q ss_pred             ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC-CchhHHHHHHHHHhhccC----CCEEEEEecC
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKVVVIFAGY  309 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~~----~~v~vi~~~~  309 (438)
                      +++++.++|+|++++.++.+|..|+   ++||||||+|++.+.++.. .+....+++++|+..|++    ..++||+||+
T Consensus       519 ~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn  598 (733)
T TIGR01243       519 RGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATN  598 (733)
T ss_pred             ehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Confidence            9999999999999999999998774   5999999999999988754 345667899999999985    5788888877


Q ss_pred             ChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcc
Q 013706          310 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  387 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (438)
                      .....     ||+++|  ||+.+|+||.|+.++|.+|++.++.+.         .+..+++.+.++..+.+++       
T Consensus       599 ~~~~l-----d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~---------~~~~~~~l~~la~~t~g~s-------  657 (733)
T TIGR01243       599 RPDIL-----DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM---------PLAEDVDLEELAEMTEGYT-------  657 (733)
T ss_pred             ChhhC-----CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHcCCCC-------
Confidence            65543     999997  999999999999999999999887654         3445566667666666554       


Q ss_pred             ccccchHHHHHHHHHHhhccccCCC----CC-----hhhhhhccHHHHHHHHHHHHhc
Q 013706          388 MNGGLVDPMLVNARENLDLRLSFDC----LD-----TDELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       388 ~n~~~l~~~~~~a~~~~~~r~~~~~----~~-----~~~~~~i~~~d~~~a~~~~~~~  436 (438)
                        |+++.+++..|...+..+.....    ..     ..+...|+.+||.+|++.++|.
T Consensus       658 --gadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps  713 (733)
T TIGR01243       658 --GADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS  713 (733)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence              67778888877777665532111    00     1122479999999999998874

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.97  E-value=9.2e-31  Score=251.88  Aligned_cols=237  Identities=22%  Similarity=0.313  Sum_probs=190.3

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|.+..++.+.+.   +..+..++..+...+..+|+++|||||||||||++|+++|+.+..       +|+.+
T Consensus       127 ~~~~~di~Gl~~~~~~l~~~---i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~-------~~i~v  196 (389)
T PRK03992        127 NVTYEDIGGLEEQIREVREA---VELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRV  196 (389)
T ss_pred             CCCHHHhCCcHHHHHHHHHH---HHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC-------CEEEe
Confidence            34688999999999999887   444556666666677788999999999999999999999998865       89999


Q ss_pred             ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      +++++..+|+|++++.++.+|+.+.   ++||||||+|.+.+++.++.   +....+.+..|+..+++    +.++||++
T Consensus       197 ~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~a  276 (389)
T PRK03992        197 VGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAA  276 (389)
T ss_pred             ehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEe
Confidence            9999999999999999999998774   59999999999998765432   23345667788887774    57888888


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      |+....  +   +|++++  ||+..|+|++|+.++|.+|++.++.+.         .+..+++.+.++..+.+       
T Consensus       277 Tn~~~~--l---d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~---------~~~~~~~~~~la~~t~g-------  335 (389)
T PRK03992        277 TNRIDI--L---DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM---------NLADDVDLEELAELTEG-------  335 (389)
T ss_pred             cCChhh--C---CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC---------CCCCcCCHHHHHHHcCC-------
Confidence            766432  3   899987  999999999999999999999988754         33445566666666654       


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHhc
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~~  436 (438)
                        .+++++++++.+|...+..+         ....|+.+||.+|++.+++.
T Consensus       336 --~sgadl~~l~~eA~~~a~~~---------~~~~i~~~d~~~A~~~~~~~  375 (389)
T PRK03992        336 --ASGADLKAICTEAGMFAIRD---------DRTEVTMEDFLKAIEKVMGK  375 (389)
T ss_pred             --CCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhcc
Confidence              44788899999888877433         23469999999999999874

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=248.79  Aligned_cols=235  Identities=19%  Similarity=0.295  Sum_probs=186.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++|.|++..++++++.+.   .+..++..+..++..++.++|||||||||||++|+++|+++..       +|+.+.
T Consensus       180 ~~~~DIgGl~~qi~~l~e~v~---lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-------~fi~V~  249 (438)
T PTZ00361        180 ESYADIGGLEQQIQEIKEAVE---LPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA-------TFLRVV  249 (438)
T ss_pred             CCHHHhcCHHHHHHHHHHHHH---hhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-------CEEEEe
Confidence            578999999999999998744   4556666666666778899999999999999999999998765       889999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      ++++.++|+|+++..++.+|..|   .++||||||||.+..++....   .....+.+..|+..+++    ..+.||++|
T Consensus       250 ~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~AT  329 (438)
T PTZ00361        250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMAT  329 (438)
T ss_pred             cchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEec
Confidence            99999999999999999999877   358999999999998765322   23344566778877764    568888887


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +..  +.+   ||+++|  ||+.+|+|+.|+.+++.+|++.++.+.         .+..+++.+.+...+.         
T Consensus       330 Nr~--d~L---DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~---------~l~~dvdl~~la~~t~---------  386 (438)
T PTZ00361        330 NRI--ESL---DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM---------TLAEDVDLEEFIMAKD---------  386 (438)
T ss_pred             CCh--HHh---hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC---------CCCcCcCHHHHHHhcC---------
Confidence            653  333   899876  999999999999999999999988764         3445566666655555         


Q ss_pred             cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      ..+++++++++..|...|..+         ....|+.+||.+|+++++.
T Consensus       387 g~sgAdI~~i~~eA~~~Alr~---------~r~~Vt~~D~~~A~~~v~~  426 (438)
T PTZ00361        387 ELSGADIKAICTEAGLLALRE---------RRMKVTQADFRKAKEKVLY  426 (438)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHHHHh
Confidence            445788899999888877332         3457999999999999854

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.97  E-value=8e-30  Score=248.00  Aligned_cols=260  Identities=19%  Similarity=0.227  Sum_probs=190.9

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc---CCCCE
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRV  234 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~---~~~~~  234 (438)
                      ...|++|+|++..++++++.   +..+..+++.+...+..+|+++|||||||||||++|+++|+.+......   ....|
T Consensus       178 ~v~~~dIgGl~~~i~~i~~~---v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f  254 (512)
T TIGR03689       178 DVTYADIGGLDSQIEQIRDA---VELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF  254 (512)
T ss_pred             CCCHHHcCChHHHHHHHHHH---HHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence            35789999999999999887   4455666666666777789999999999999999999999998643211   23457


Q ss_pred             EEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCC-CchhHHHHHHHHHhhccC----CCE
Q 013706          235 TEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKV  302 (438)
Q Consensus       235 ~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~~----~~v  302 (438)
                      +.+..+++.++|+|++++.++.+|+.+       .++||||||+|.+.++++.+ +++....++++||..||+    +.+
T Consensus       255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V  334 (512)
T TIGR03689       255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV  334 (512)
T ss_pred             EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence            788888999999999999999998765       35899999999999877643 455667889999999986    568


Q ss_pred             EEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHH-
Q 013706          303 VVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE-  379 (438)
Q Consensus       303 ~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  379 (438)
                      +||++||....  +   ||+++|  ||+.+|+|+.|+.+++.+|++.++......  ...+......+...+..++... 
T Consensus       335 iVI~ATN~~d~--L---DpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~~~l~~~~g~~~a~~~al~~~av  407 (512)
T TIGR03689       335 IVIGASNREDM--I---DPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--DADLAEFDGDREATAAALIQRAV  407 (512)
T ss_pred             EEEeccCChhh--C---CHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--hHHHHHhcCCCHHHHHHHHHHHH
Confidence            88888765443  3   999998  999999999999999999999998752110  0000000111222233333221 


Q ss_pred             ---hh-H------------------hhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706          380 ---TT-E------------------KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  432 (438)
Q Consensus       380 ---~~-~------------------~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~  432 (438)
                         ++ .                  ...+...|+++.++|++|...+..+.-..     ....++.+|+..|+..
T Consensus       408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~-----~~~~~~~~~l~~a~~~  477 (512)
T TIGR03689       408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG-----GQVGLRIEHLLAAVLD  477 (512)
T ss_pred             HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc-----CCcCcCHHHHHHHHHH
Confidence               11 0                  01245679999999999999987775421     1247888898888764

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.3e-31  Score=248.22  Aligned_cols=218  Identities=22%  Similarity=0.312  Sum_probs=185.9

Q ss_pred             CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccC---------
Q 013706          193 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG---------  263 (438)
Q Consensus       193 ~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~---------  263 (438)
                      .++..+.+++|||||||||||++||.|.+.|+...     | -.+++++++++|+|+++.+++++|..|+.         
T Consensus       250 ~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre-----P-KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~S  323 (744)
T KOG0741|consen  250 QLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE-----P-KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANS  323 (744)
T ss_pred             HcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC-----C-cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccC
Confidence            45667899999999999999999999999997522     2 34788999999999999999999987731         


Q ss_pred             --cEEEEeCcccccCCCCCC--CchhHHHHHHHHHhhccC----CCEEEEEecCChhHHHHhhhCcCccC--CCCcceeC
Q 013706          264 --GILFVDEAYRLIPMQKAD--DKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHF  333 (438)
Q Consensus       264 --~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~  333 (438)
                        -||++||||+++.+|++.  +......++|+||..||+    +++.||+.|++.++.     |.||+|  ||...+++
T Consensus       324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlI-----DEALLRPGRlEVqmEI  398 (744)
T KOG0741|consen  324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLI-----DEALLRPGRLEVQMEI  398 (744)
T ss_pred             CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhH-----HHHhcCCCceEEEEEE
Confidence              599999999999998865  356778999999999998    789999998887775     889988  99999999


Q ss_pred             CCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCC-
Q 013706          334 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDC-  412 (438)
Q Consensus       334 ~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~-  412 (438)
                      ..|+...|.+|++.+.++..+     .-.++.+++.+.++.+++.++         |+++..+|..|...|..|..... 
T Consensus       399 sLPDE~gRlQIl~IHT~rMre-----~~~l~~dVdl~elA~lTKNfS---------GAEleglVksA~S~A~nR~vk~~~  464 (744)
T KOG0741|consen  399 SLPDEKGRLQILKIHTKRMRE-----NNKLSADVDLKELAALTKNFS---------GAELEGLVKSAQSFAMNRHVKAGG  464 (744)
T ss_pred             eCCCccCceEEEEhhhhhhhh-----cCCCCCCcCHHHHHHHhcCCc---------hhHHHHHHHHHHHHHHHhhhccCc
Confidence            999999999999998888753     226788899999999999876         78889999999999999864322 


Q ss_pred             ---CC--hhhhhhccHHHHHHHHHHHHh
Q 013706          413 ---LD--TDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       413 ---~~--~~~~~~i~~~d~~~a~~~~~~  435 (438)
                         .+  ..+...|+..||..|++.++|
T Consensus       465 ~~~~~~~~~e~lkV~r~DFl~aL~dVkP  492 (744)
T KOG0741|consen  465 KVEVDPVAIENLKVTRGDFLNALEDVKP  492 (744)
T ss_pred             ceecCchhhhheeecHHHHHHHHHhcCc
Confidence               22  334568999999999999988

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.5e-30  Score=251.04  Aligned_cols=235  Identities=23%  Similarity=0.326  Sum_probs=199.7

Q ss_pred             HHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE
Q 013706          157 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  236 (438)
Q Consensus       157 ~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~  236 (438)
                      ....|.++.|.+.+|+++.+++..++.|.++..+|-    .-|++++|+||||||||++||++|.+.+.       ||+.
T Consensus       145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa----kiPkGvlLvGpPGTGKTLLAkAvAgEA~V-------PFf~  213 (596)
T COG0465         145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGA----KIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFS  213 (596)
T ss_pred             cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc----ccccceeEecCCCCCcHHHHHHHhcccCC-------Ccee
Confidence            446799999999999999999999988888877654    57899999999999999999999998877       9999


Q ss_pred             eecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCC---CCchhHHHHHHHHHhhccC----CCEEEEE
Q 013706          237 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA---DDKDYGIEALEEIMSVMDG----GKVVVIF  306 (438)
Q Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~~~~----~~v~vi~  306 (438)
                      +++++++..++|-....+|.+|++|+   +||+||||+|.+...|+.   .+++.-...+|+||..||+    ..|++++
T Consensus       214 iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia  293 (596)
T COG0465         214 ISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA  293 (596)
T ss_pred             ccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence            99999999999999999999999986   599999999999998863   3566777899999999997    2488888


Q ss_pred             ecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706          307 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  384 (438)
Q Consensus       307 ~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (438)
                      +|++.++.     ||||+|  |||+.|.++.|+...|++|++.+++..         .+++.++...++..+.+.+    
T Consensus       294 aTNRpdVl-----D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~---------~l~~~Vdl~~iAr~tpGfs----  355 (596)
T COG0465         294 ATNRPDVL-----DPALLRPGRFDRQILVELPDIKGREQILKVHAKNK---------PLAEDVDLKKIARGTPGFS----  355 (596)
T ss_pred             cCCCcccc-----hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC---------CCCCcCCHHHHhhhCCCcc----
Confidence            87777665     999999  999999999999999999999888764         4567788777777766555    


Q ss_pred             hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          385 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                           ++++.|++..|.-.++.+         ....|+..||.+|.+++.
T Consensus       356 -----GAdL~nl~NEAal~aar~---------n~~~i~~~~i~ea~drv~  391 (596)
T COG0465         356 -----GADLANLLNEAALLAARR---------NKKEITMRDIEEAIDRVI  391 (596)
T ss_pred             -----cchHhhhHHHHHHHHHHh---------cCeeEeccchHHHHHHHh
Confidence                 677788887777666333         446788888888887764

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.96  E-value=3.5e-29  Score=249.45  Aligned_cols=234  Identities=22%  Similarity=0.331  Sum_probs=184.7

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|++.+++++.+++..+..+......+    ...++++||+||||||||++|+++|++++.       +++.+
T Consensus        51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g----~~~~~giLL~GppGtGKT~la~alA~~~~~-------~~~~i  119 (495)
T TIGR01241        51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG----AKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFSI  119 (495)
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC----CCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------Ceeec
Confidence            3578999999999999999888766555554433    457889999999999999999999998765       89999


Q ss_pred             ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      +++++...+.|.+++.++.+|+.+.   ++||||||+|.+.++++..   .+.....+++.|+..||+    +.++||++
T Consensus       120 ~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a  199 (495)
T TIGR01241       120 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA  199 (495)
T ss_pred             cHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe
Confidence            9999999999999999999998874   5999999999999887642   244556889999999975    45888888


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      |+....  +   ||+++|  ||+..|+++.|+.++|.+|++.++.+..         +..+++.+.++..+.        
T Consensus       200 Tn~~~~--l---d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~---------~~~~~~l~~la~~t~--------  257 (495)
T TIGR01241       200 TNRPDV--L---DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK---------LAPDVDLKAVARRTP--------  257 (495)
T ss_pred             cCChhh--c---CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC---------CCcchhHHHHHHhCC--------
Confidence            765443  3   899987  9999999999999999999999987642         223333333333333        


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                       ..+++++.+++++|...+..+         ....|+.+||++|++.+.
T Consensus       258 -G~sgadl~~l~~eA~~~a~~~---------~~~~i~~~~l~~a~~~~~  296 (495)
T TIGR01241       258 -GFSGADLANLLNEAALLAARK---------NKTEITMNDIEEAIDRVI  296 (495)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHh
Confidence             445788999998887655222         235689999999998775

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>CHL00176 ftsH cell division protein; Validated

Probab=99.96  E-value=3.9e-28  Score=244.18  Aligned_cols=232  Identities=23%  Similarity=0.342  Sum_probs=184.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|.+.+++++.+++..+..+.....    .+...++++||+||||||||++|+++|.+++.       +++.++
T Consensus       180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~----~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is  248 (638)
T CHL00176        180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTA----VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSIS  248 (638)
T ss_pred             CCHHhccChHHHHHHHHHHHHHHhCHHHHhh----ccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------Ceeecc
Confidence            4789999999999999998877665554433    44567889999999999999999999998765       899999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCC---CCchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA---DDKDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      ++++...++|.....++.+|+.|.   ++||||||+|.+...++.   ..+.....++++||..||+    ..++||++|
T Consensus       249 ~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaT  328 (638)
T CHL00176        249 GSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAAT  328 (638)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEec
Confidence            999998899998889999998874   589999999999877653   2345566889999999975    468888887


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +....  +   ||+++|  ||+..|.|+.|+.++|.+|++.++.+..         +.+   +..+..++..+.      
T Consensus       329 N~~~~--L---D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---------~~~---d~~l~~lA~~t~------  385 (638)
T CHL00176        329 NRVDI--L---DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---------LSP---DVSLELIARRTP------  385 (638)
T ss_pred             CchHh--h---hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---------cch---hHHHHHHHhcCC------
Confidence            65443  2   888887  9999999999999999999999998632         222   234455555442      


Q ss_pred             cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      ..++++|.+++++|...++.+         ....|+.+||++|++.+
T Consensus       386 G~sgaDL~~lvneAal~a~r~---------~~~~It~~dl~~Ai~rv  423 (638)
T CHL00176        386 GFSGADLANLLNEAAILTARR---------KKATITMKEIDTAIDRV  423 (638)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence            458899999999987766432         33568999999999876

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=9.9e-29  Score=231.41  Aligned_cols=245  Identities=22%  Similarity=0.282  Sum_probs=197.5

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|+++.|.+.+++.+.+.   +.++..+++.+..+. .++.++||+||||||||+++++||.++..       .|+.++
T Consensus       150 v~~~di~gl~~~k~~l~e~---vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~a-------tff~iS  218 (428)
T KOG0740|consen  150 VGWDDIAGLEDAKQSLKEA---VILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGA-------TFFNIS  218 (428)
T ss_pred             ccccCCcchhhHHHHhhhh---hhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcc-------eEeecc
Confidence            5689999999999999987   677777788877664 47889999999999999999999999987       999999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCEEEEEecC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGY  309 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v~vi~~~~  309 (438)
                      ++.+.++|+|++++.++.+|.-|   +++|+||||+|+++..|...+++...+...++|-.+++      .+|+||+|||
T Consensus       219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN  298 (428)
T KOG0740|consen  219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN  298 (428)
T ss_pred             HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC
Confidence            99999999999999999999877   46999999999999999777788888888888888875      4688888876


Q ss_pred             ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706          310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  389 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  389 (438)
                      ...-.     |.+++|||..++.+|.|+.+.+..+++..+.+..       ..+. +.+.+.+..++++|         +
T Consensus       299 ~P~e~-----Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~-------~~l~-~~d~~~l~~~Tegy---------s  356 (428)
T KOG0740|consen  299 RPWEL-----DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQP-------NGLS-DLDISLLAKVTEGY---------S  356 (428)
T ss_pred             CchHH-----HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCC-------CCcc-HHHHHHHHHHhcCc---------c
Confidence            55543     8889999999999999999999999999998852       1221 12444555555544         4


Q ss_pred             ccchHHHHHHHHHHhhccc----cCCCCChhhhhhccHHHHHHHHHHHHhc
Q 013706          390 GGLVDPMLVNARENLDLRL----SFDCLDTDELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       390 ~~~l~~~~~~a~~~~~~r~----~~~~~~~~~~~~i~~~d~~~a~~~~~~~  436 (438)
                      +.++.+++..|..--...+    .-.....+..+.++..||+++++.++|.
T Consensus       357 gsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~  407 (428)
T KOG0740|consen  357 GSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS  407 (428)
T ss_pred             cccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence            6667777776654221111    1223456778899999999999999875

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.2e-28  Score=216.49  Aligned_cols=233  Identities=23%  Similarity=0.294  Sum_probs=185.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      -.|+++.|.......+++   .+..+...++++..++..+|++++||||||||||.+|+++|..++.       .|+.+.
T Consensus       129 ~s~~~~ggl~~qirelre---~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~-------nfl~v~  198 (388)
T KOG0651|consen  129 ISFENVGGLFYQIRELRE---VIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV-------NFLKVV  198 (388)
T ss_pred             cCHHHhCChHHHHHHHHh---heEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC-------ceEEee
Confidence            368888888755555554   5788889999999999999999999999999999999999998876       899999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCch---hHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKD---YGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~---~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      .+.++++|+||+.+.+++.|..|+   +||||+||||.+..++.+....   ...+.+-.|+.+|++    ++|-+|+||
T Consensus       199 ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Imat  278 (388)
T KOG0651|consen  199 SSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMAT  278 (388)
T ss_pred             HhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEec
Confidence            999999999999999999999885   5999999999999877443333   344555566666766    789999998


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +..+..     +|+|+|  |+++.++.|.|+...+..|++.+-...         .....++.+++.++..+        
T Consensus       279 NrpdtL-----dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i---------~~~Geid~eaivK~~d~--------  336 (388)
T KOG0651|consen  279 NRPDTL-----DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI---------DFHGEIDDEAILKLVDG--------  336 (388)
T ss_pred             CCcccc-----chhhcCCccccceeccCCcchhhceeeEeeccccc---------cccccccHHHHHHHHhc--------
Confidence            776664     999998  999999999999999999888766543         44566788888888875        


Q ss_pred             cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                       .||++++++...|-.-+         .+++...+..+||-.++.++
T Consensus       337 -f~gad~rn~~tEag~Fa---------~~~~~~~vl~Ed~~k~vrk~  373 (388)
T KOG0651|consen  337 -FNGADLRNVCTEAGMFA---------IPEERDEVLHEDFMKLVRKQ  373 (388)
T ss_pred             -cChHHHhhhcccccccc---------cchhhHHHhHHHHHHHHHHH
Confidence             45677777766655332         34455667788887776654

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.95  E-value=1.4e-27  Score=217.94  Aligned_cols=186  Identities=16%  Similarity=0.217  Sum_probs=145.3

Q ss_pred             CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc--------CcE
Q 013706          194 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE--------GGI  265 (438)
Q Consensus       194 ~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~--------~~i  265 (438)
                      .+..+|.+++||||||||||++|+++|++++.       +++.++++++.++|+|++++.++++|..|.        +||
T Consensus       143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~-------~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV  215 (413)
T PLN00020        143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGI-------EPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSC  215 (413)
T ss_pred             cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-------CeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence            34568999999999999999999999999877       899999999999999999999999998773        699


Q ss_pred             EEEeCcccccCCCCCCCchhHHHHH-HHHHhhccC----------------CCEEEEEecCChhHHHHhhhCcCccC--C
Q 013706          266 LFVDEAYRLIPMQKADDKDYGIEAL-EEIMSVMDG----------------GKVVVIFAGYSEPMKRVIASNEGFCR--R  326 (438)
Q Consensus       266 l~iDEid~l~~~~~~~~~~~~~~~~-~~ll~~~~~----------------~~v~vi~~~~~~~~~~~~~~~p~l~~--R  326 (438)
                      |||||||++++++.+++.....+++ .+|+..||+                ..|+||+|||.....     +|+|+|  |
T Consensus       216 LFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~L-----DpALlRpGR  290 (413)
T PLN00020        216 LFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTL-----YAPLIRDGR  290 (413)
T ss_pred             EEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccC-----CHhHcCCCC
Confidence            9999999999988755555555554 789888753                347788886554443     999999  9


Q ss_pred             CCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhc
Q 013706          327 VTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL  406 (438)
Q Consensus       327 ~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~  406 (438)
                      ||..+  ..|+.++|.+|++.++++.             .++...+..+...+-++.+...  |+.--.+.+.+++....
T Consensus       291 fDk~i--~lPd~e~R~eIL~~~~r~~-------------~l~~~dv~~Lv~~f~gq~~Df~--GAlrar~yd~~v~~~i~  353 (413)
T PLN00020        291 MEKFY--WAPTREDRIGVVHGIFRDD-------------GVSREDVVKLVDTFPGQPLDFF--GALRARVYDDEVRKWIA  353 (413)
T ss_pred             CCcee--CCCCHHHHHHHHHHHhccC-------------CCCHHHHHHHHHcCCCCCchhh--hHHHHHHHHHHHHHHHH
Confidence            99865  5899999999999998863             3456788888887755444222  33334455666665544


Q ss_pred             cc
Q 013706          407 RL  408 (438)
Q Consensus       407 r~  408 (438)
                      ++
T Consensus       354 ~~  355 (413)
T PLN00020        354 EV  355 (413)
T ss_pred             Hh
Confidence            43

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.95  E-value=8.5e-28  Score=230.78  Aligned_cols=233  Identities=23%  Similarity=0.319  Sum_probs=182.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++++|++..++++++.+.   .+..++..+...+..+|+++||+||||||||++|+++|+.+..       +++.+.
T Consensus       119 ~~~~di~Gl~~~~~~l~~~i~---~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-------~~~~v~  188 (364)
T TIGR01242       119 VSYEDIGGLEEQIREIREAVE---LPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV  188 (364)
T ss_pred             CCHHHhCChHHHHHHHHHHHH---HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-------CEEecc
Confidence            468899999999999998754   4445555555566678899999999999999999999998765       788888


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      ++++...++|+....++..|+.++   ++||||||+|.+..++.+..   .......+..++..+++    +.+.||++|
T Consensus       189 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~tt  268 (364)
T TIGR01242       189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAAT  268 (364)
T ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence            888999999999999999998764   58999999999987765332   22344566777777763    578888887


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +....  +   +|++++  ||+..|+|+.|+.+++.+|++.++.+.         .+..+++.+.++..+.+        
T Consensus       269 n~~~~--l---d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~---------~l~~~~~~~~la~~t~g--------  326 (364)
T TIGR01242       269 NRPDI--L---DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM---------KLAEDVDLEAIAKMTEG--------  326 (364)
T ss_pred             CChhh--C---ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC---------CCCccCCHHHHHHHcCC--------
Confidence            65432  2   888887  999999999999999999999887653         33344566666666654        


Q ss_pred             cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                       .+++++++++..|...+..+         +...|+.+||.+|++++
T Consensus       327 -~sg~dl~~l~~~A~~~a~~~---------~~~~i~~~d~~~a~~~~  363 (364)
T TIGR01242       327 -ASGADLKAICTEAGMFAIRE---------ERDYVTMDDFIKAVEKV  363 (364)
T ss_pred             -CCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHh
Confidence             44788899998888877433         23579999999999886

Many proteins may score above the trusted cutoff because an internal

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.1e-27  Score=238.08  Aligned_cols=250  Identities=23%  Similarity=0.258  Sum_probs=203.3

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.++.++++.   +..+..+++.+......+|.++||+||||||||+.||++|..+..  ...+..|+.-.
T Consensus       262 v~fd~vggl~~~i~~LKEm---Vl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~--~~~kisffmrk  336 (1080)
T KOG0732|consen  262 VGFDSVGGLENYINQLKEM---VLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSR--GNRKISFFMRK  336 (1080)
T ss_pred             cCccccccHHHHHHHHHHH---HHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcc--cccccchhhhc
Confidence            4699999999999999987   778889999998888889999999999999999999999998742  23345677888


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCCh
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE  311 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~  311 (438)
                      +++..++|+|+.+..++-+|++|+   ++|+|+||||-++|.|.+-+......++..||.+|++    ++|+||+||++.
T Consensus       337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRp  416 (1080)
T KOG0732|consen  337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP  416 (1080)
T ss_pred             CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence            899999999999999999999996   4899999999999988755555556788999999987    889999998766


Q ss_pred             hHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706          312 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  389 (438)
Q Consensus       312 ~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  389 (438)
                      +..     +|+|+|  ||+..++||.|+.+++..|+..+..+..           +.+....+.++++...      .+-
T Consensus       417 da~-----dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-----------~~i~~~l~~~la~~t~------gy~  474 (1080)
T KOG0732|consen  417 DAI-----DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-----------PPISRELLLWLAEETS------GYG  474 (1080)
T ss_pred             ccc-----chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-----------CCCCHHHHHHHHHhcc------ccc
Confidence            553     999988  9999999999999999999998877653           3445555666666554      455


Q ss_pred             ccchHHHHHHHHHHhhccccC------CC-CChhhhhhccHHHHHHHHHHHHh
Q 013706          390 GGLVDPMLVNARENLDLRLSF------DC-LDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       390 ~~~l~~~~~~a~~~~~~r~~~------~~-~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      |++++.++..|...+..|-.-      +. ........|...||-.|+..+.|
T Consensus       475 gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~p  527 (1080)
T KOG0732|consen  475 GADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITP  527 (1080)
T ss_pred             hHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCC
Confidence            788888888888877765321      11 11223345999999999988766

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.94  E-value=9.8e-27  Score=212.36  Aligned_cols=192  Identities=22%  Similarity=0.310  Sum_probs=154.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++++|++.+...-.-+.+.+             ......+++||||||||||++|+.||...+.       .|..++
T Consensus        21 ~~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-------~f~~~s   80 (436)
T COG2256          21 KSLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNA-------AFEALS   80 (436)
T ss_pred             CCHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCC-------ceEEec
Confidence            46899999998764433222222             1346789999999999999999999998876       788877


Q ss_pred             cccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  311 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~  311 (438)
                      +...       +-+.++.++++|       +..||||||||+|...+|           +.||..|+++.+++|+|||.|
T Consensus        81 Av~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE~G~iilIGATTEN  142 (436)
T COG2256          81 AVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVENGTIILIGATTEN  142 (436)
T ss_pred             cccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhcCCeEEEEeccCCC
Confidence            6543       335677888777       248999999999999888           999999999999999999999


Q ss_pred             hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc-ccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-LHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      |...+   +|+|++|. .+++|.+++.+++..++++-+.....     |+. ....++++++..+....       .|++
T Consensus       143 PsF~l---n~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~r-----gl~~~~~~i~~~a~~~l~~~s-------~GD~  206 (436)
T COG2256         143 PSFEL---NPALLSRA-RVFELKPLSSEDIKKLLKRALLDEER-----GLGGQIIVLDEEALDYLVRLS-------NGDA  206 (436)
T ss_pred             CCeee---cHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhc-----CCCcccccCCHHHHHHHHHhc-------CchH
Confidence            99877   99999998 99999999999999999995555442     443 33456778888887765       6778


Q ss_pred             cchHHHHHHHHHHh
Q 013706          391 GLVDPMLVNARENL  404 (438)
Q Consensus       391 ~~l~~~~~~a~~~~  404 (438)
                      |.+.|.+|.+...+
T Consensus       207 R~aLN~LE~~~~~~  220 (436)
T COG2256         207 RRALNLLELAALSA  220 (436)
T ss_pred             HHHHHHHHHHHHhc
Confidence            88999999888876

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.7e-27  Score=192.12  Aligned_cols=132  Identities=35%  Similarity=0.454  Sum_probs=121.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHC-CCCcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~   80 (438)
                      |+|+|||||||..||.++|.+|++.   .+..+|.+|..||||||+||..|+.++|+.|+.+ |+|+|..+..|.|+|||
T Consensus        36 qD~Rt~LHwa~S~g~~eiv~fLlsq---~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHy  112 (226)
T KOG4412|consen   36 QDGRTPLHWACSFGHVEIVYFLLSQ---PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHY  112 (226)
T ss_pred             ccCCceeeeeeecCchhHHHHHHhc---CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehh
Confidence            7999999999999999999999973   7888999999999999999999999999999998 99999999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      |+    .+|+.+++.+|++.|+.++.+|..|.||||.+|+ -+..+++++|...++..+..
T Consensus       113 Aa----gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAa-vGklkvie~Li~~~a~~n~q  168 (226)
T KOG4412|consen  113 AA----GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAA-VGKLKVIEYLISQGAPLNTQ  168 (226)
T ss_pred             hh----cCChhhHHHHHHhcCCCCcccccccCchhHHHHh-ccchhhHHHHHhcCCCCCcc
Confidence            99    8999999999999999999999999999966666 56888999999877654433

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.2e-26  Score=223.45  Aligned_cols=209  Identities=23%  Similarity=0.322  Sum_probs=171.0

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      +++.|......++++.   +.++.+++..+...+..+|+++|+|||||||||++++++|++.+.       .++.+++++
T Consensus       184 ~~~gg~~~~~~~i~e~---v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a-------~~~~i~~pe  253 (693)
T KOG0730|consen  184 DDIGGLKRQLSVIREL---VELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA-------FLFLINGPE  253 (693)
T ss_pred             cccchhHHHHHHHHHH---HHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc-------eeEecccHH
Confidence            4556666555555555   778889999998899999999999999999999999999999876       788999999


Q ss_pred             ccccccccchHHHHHHHHHcc----CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCChhH
Q 013706          242 LVGEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPM  313 (438)
Q Consensus       242 ~~~~~~g~~~~~~~~~~~~a~----~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~~~  313 (438)
                      +++++.|+++++++++|++|.    ++|+||||+|.++|++..... ...++..+|+.+|++    ++++|++++++...
T Consensus       254 li~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s  332 (693)
T KOG0730|consen  254 LISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS  332 (693)
T ss_pred             HHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc
Confidence            999999999999999999883    689999999999998876554 677999999999986    56888888765554


Q ss_pred             HHHhhhCcCccC-CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccc
Q 013706          314 KRVIASNEGFCR-RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL  392 (438)
Q Consensus       314 ~~~~~~~p~l~~-R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  392 (438)
                      .     ||+++| |||..+.+..|+..++.+|++.+.++..         +..+.+...++..+.+|.|         ++
T Consensus       333 l-----d~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~---------~~~~~~l~~iA~~thGyvG---------aD  389 (693)
T KOG0730|consen  333 L-----DPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMN---------LLSDVDLEDIAVSTHGYVG---------AD  389 (693)
T ss_pred             c-----ChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcC---------CcchhhHHHHHHHccchhH---------HH
Confidence            3     999997 9999999999999999999999988753         3344566666666666664         55


Q ss_pred             hHHHHHHHHHHh
Q 013706          393 VDPMLVNARENL  404 (438)
Q Consensus       393 l~~~~~~a~~~~  404 (438)
                      |-.++..|...+
T Consensus       390 L~~l~~ea~~~~  401 (693)
T KOG0730|consen  390 LAALCREASLQA  401 (693)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555444

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.94  E-value=6.8e-26  Score=230.82  Aligned_cols=237  Identities=19%  Similarity=0.291  Sum_probs=187.5

Q ss_pred             HHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706          156 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  235 (438)
Q Consensus       156 ~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~  235 (438)
                      .....|+++.|.+..++++.++......+.....    .+...+++++|+||||||||++|+++++++..       +|+
T Consensus       146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~----~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~-------~f~  214 (644)
T PRK10733        146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQK----LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFF  214 (644)
T ss_pred             hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHh----cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------CEE
Confidence            4456799999999999999998776655444433    23346788999999999999999999998866       899


Q ss_pred             EeecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEE
Q 013706          236 EVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVI  305 (438)
Q Consensus       236 ~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi  305 (438)
                      .++++++...++|.....++..|+.+.   ++||||||+|.+.++++..   .+.....++++||..||+    ..++||
T Consensus       215 ~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI  294 (644)
T PRK10733        215 TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI  294 (644)
T ss_pred             EEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence            999999999999999999999998874   5899999999999877632   344566789999999985    457888


Q ss_pred             EecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHh
Q 013706          306 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK  383 (438)
Q Consensus       306 ~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (438)
                      ++|+.....     ||+++|  ||++.|.|+.|+.++|.+|++.++.+.         .+..+++...++..+.      
T Consensus       295 aaTN~p~~l-----D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~---------~l~~~~d~~~la~~t~------  354 (644)
T PRK10733        295 AATNRPDVL-----DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAAIIARGTP------  354 (644)
T ss_pred             EecCChhhc-----CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC---------CCCCcCCHHHHHhhCC------
Confidence            887654433     899987  999999999999999999999999764         3344555444443333      


Q ss_pred             hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          384 QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       384 ~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                         ..+++++.+++..|...++.+         +...|+.+||++|++.+.+
T Consensus       355 ---G~sgadl~~l~~eAa~~a~r~---------~~~~i~~~d~~~a~~~v~~  394 (644)
T PRK10733        355 ---GFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIMM  394 (644)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHc---------CCCcccHHHHHHHHHHHhc
Confidence               556889999999998876432         3357899999999887754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.94  E-value=5.9e-26  Score=236.44  Aligned_cols=245  Identities=21%  Similarity=0.320  Sum_probs=190.8

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|.+.+++++++++.   .+..+++.+...+..++.++|||||||||||++|+++|+++..       +++.++
T Consensus       175 ~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~-------~~i~i~  244 (733)
T TIGR01243       175 VTYEDIGGLKEAKEKIREMVE---LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA-------YFISIN  244 (733)
T ss_pred             CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC-------eEEEEe
Confidence            578999999999999998854   4445566555666678899999999999999999999998865       789999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCCh
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE  311 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~  311 (438)
                      ++++.+++.|+++..++.+|+.+.   ++||||||+|.+.++++....+...+++++|+..|++    +.++||++|+..
T Consensus       245 ~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~  324 (733)
T TIGR01243       245 GPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRP  324 (733)
T ss_pred             cHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCCh
Confidence            999999999999999999998874   4899999999999988765566667889999999974    567888776544


Q ss_pred             hHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706          312 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  389 (438)
Q Consensus       312 ~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  389 (438)
                      .  .+   ||++++  ||+..+.++.|+.+++.+|++.+....         .+..+.+.+.+...+.++.         
T Consensus       325 ~--~l---d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~---------~l~~d~~l~~la~~t~G~~---------  381 (733)
T TIGR01243       325 D--AL---DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM---------PLAEDVDLDKLAEVTHGFV---------  381 (733)
T ss_pred             h--hc---CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC---------CCccccCHHHHHHhCCCCC---------
Confidence            3  23   899887  999999999999999999999776543         3334445555555555444         


Q ss_pred             ccchHHHHHHHHHHhhccccC-CCC-------Ch--hhhhhccHHHHHHHHHHHHhc
Q 013706          390 GGLVDPMLVNARENLDLRLSF-DCL-------DT--DELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       390 ~~~l~~~~~~a~~~~~~r~~~-~~~-------~~--~~~~~i~~~d~~~a~~~~~~~  436 (438)
                      ++++..++..|...+..|... ...       ..  .+...++.+||..|++.++|-
T Consensus       382 gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps  438 (733)
T TIGR01243       382 GADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS  438 (733)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcccc
Confidence            567777888777777666432 111       10  122468999999999988875

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.2e-25  Score=181.53  Aligned_cols=133  Identities=32%  Similarity=0.462  Sum_probs=122.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..||||||+||..|+.++|+.|+..   .++++|..++.|+||||||+..|+.+++++|++.|+.++.+|..|.||||-|
T Consensus        70 daGWtPlhia~s~g~~evVk~Ll~r---~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRA  146 (226)
T KOG4412|consen   70 DAGWTPLHIAASNGNDEVVKELLNR---SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRA  146 (226)
T ss_pred             ccCCchhhhhhhcCcHHHHHHHhcC---CCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHH
Confidence            4799999999999999999999984   5999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                      +    ..|+..++++|+..|+.+|..|++|+|||||+.+. ++.+...+|.+.+++....+
T Consensus       147 A----avGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e-~~~d~a~lLV~~gAd~~~ed  202 (226)
T KOG4412|consen  147 A----AVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAE-GHPDVAVLLVRAGADTDRED  202 (226)
T ss_pred             H----hccchhhHHHHHhcCCCCCcccccCccHHHHHHhc-cCchHHHHHHHhccceeecc
Confidence            9    88999999999999999999999999999777554 47788888888887755544

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.92  E-value=5.9e-25  Score=188.42  Aligned_cols=185  Identities=24%  Similarity=0.328  Sum_probs=125.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++||+.++..++-+++...           .......|+|||||||+|||++|+.||++++.       .+...+
T Consensus        21 ~~L~efiGQ~~l~~~l~i~i~aa~-----------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~-------~~~~~s   82 (233)
T PF05496_consen   21 KSLDEFIGQEHLKGNLKILIRAAK-----------KRGEALDHMLFYGPPGLGKTTLARIIANELGV-------NFKITS   82 (233)
T ss_dssp             SSCCCS-S-HHHHHHHHHHHHHHH-----------CTTS---EEEEESSTTSSHHHHHHHHHHHCT---------EEEEE
T ss_pred             CCHHHccCcHHHHhhhHHHHHHHH-----------hcCCCcceEEEECCCccchhHHHHHHHhccCC-------CeEecc
Confidence            468999999999999887655442           11235679999999999999999999999987       676666


Q ss_pred             cccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC----------------
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------------  301 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------  301 (438)
                      ++.+.      ....+..++... .+.||||||||++.+..|           ..|+..|+++.                
T Consensus        83 g~~i~------k~~dl~~il~~l~~~~ILFIDEIHRlnk~~q-----------e~LlpamEd~~idiiiG~g~~ar~~~~  145 (233)
T PF05496_consen   83 GPAIE------KAGDLAAILTNLKEGDILFIDEIHRLNKAQQ-----------EILLPAMEDGKIDIIIGKGPNARSIRI  145 (233)
T ss_dssp             CCC--------SCHHHHHHHHT--TT-EEEECTCCC--HHHH-----------HHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred             chhhh------hHHHHHHHHHhcCCCcEEEEechhhccHHHH-----------HHHHHHhccCeEEEEeccccccceeec
Confidence            54321      122344444443 568999999999987555           89999998743                


Q ss_pred             ----EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH
Q 013706          302 ----VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  377 (438)
Q Consensus       302 ----v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (438)
                          +.+|+|||.....     .++|++||....++..|+.+|+..|+++.....           ..+++.++...++.
T Consensus       146 ~l~~FTligATTr~g~l-----s~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-----------~i~i~~~~~~~Ia~  209 (233)
T PF05496_consen  146 NLPPFTLIGATTRAGLL-----SSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-----------NIEIDEDAAEEIAR  209 (233)
T ss_dssp             E----EEEEEESSGCCT-----SHCCCTTSSEEEE----THHHHHHHHHHCCHCT-----------T-EE-HHHHHHHHH
T ss_pred             cCCCceEeeeecccccc-----chhHHhhcceecchhcCCHHHHHHHHHHHHHHh-----------CCCcCHHHHHHHHH
Confidence                5778888777654     789999999999999999999999999866643           35567788888877


Q ss_pred             HHhhHhhhccccccchHHHHHHHH
Q 013706          378 KETTEKQRREMNGGLVDPMLVNAR  401 (438)
Q Consensus       378 ~~~~~~~~~~~n~~~l~~~~~~a~  401 (438)
                      ..       -|..|-..+++.++.
T Consensus       210 rs-------rGtPRiAnrll~rvr  226 (233)
T PF05496_consen  210 RS-------RGTPRIANRLLRRVR  226 (233)
T ss_dssp             CT-------TTSHHHHHHHHHHHC
T ss_pred             hc-------CCChHHHHHHHHHHH
Confidence            65       355676777776653

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.92  E-value=9.1e-25  Score=231.53  Aligned_cols=199  Identities=11%  Similarity=0.124  Sum_probs=148.1

Q ss_pred             CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccc----------cc--------------
Q 013706          193 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----------VG--------------  248 (438)
Q Consensus       193 ~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----------~g--------------  248 (438)
                      .++..+|+|+||+||||||||.+||++|.+++.       ||+.+++++++..+          +|              
T Consensus      1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~V-------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206       1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYV-------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred             HcCCCCCCceEEECCCCCCHHHHHHHHHHhcCC-------ceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence            355678999999999999999999999999887       99999999888654          22              


Q ss_pred             -----------------cchH--HHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-------
Q 013706          249 -----------------HTGP--KTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------  299 (438)
Q Consensus       249 -----------------~~~~--~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------  299 (438)
                                       ..+.  .++.+|+.|   .+|||||||||.+..+..   .   ...+++|+..|++       
T Consensus      1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds---~---~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206       1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES---N---YLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred             cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc---c---eehHHHHHHHhccccccCCC
Confidence                             2222  367788877   469999999999987522   1   1247888888874       


Q ss_pred             CCEEEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhcccccccccccccccc-ccHHHHHHHH
Q 013706          300 GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSS-CSMDAIAALI  376 (438)
Q Consensus       300 ~~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~  376 (438)
                      ..|+||+||+.....     ||||+|  |||+.|.++.|+..++.+++...+...       ++.+... ++.+.++..+
T Consensus      1771 ~~VIVIAATNRPD~L-----DPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tk-------g~~L~~~~vdl~~LA~~T 1838 (2281)
T CHL00206       1771 RNILVIASTHIPQKV-----DPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR-------GFHLEKKMFHTNGFGSIT 1838 (2281)
T ss_pred             CCEEEEEeCCCcccC-----CHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhc-------CCCCCcccccHHHHHHhC
Confidence            358899998766553     999998  999999999999999998887544221       2333322 3445555554


Q ss_pred             HHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          377 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       377 ~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      .         +.+||+|.+++.+|...++.+         ....|+.+|+..|++...
T Consensus      1839 ~---------GfSGADLanLvNEAaliAirq---------~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206       1839 M---------GSNARDLVALTNEALSISITQ---------KKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred             C---------CCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHH
Confidence            4         455788899999888887443         235678888888888764

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=99.89  E-value=1.1e-22  Score=182.57  Aligned_cols=222  Identities=21%  Similarity=0.271  Sum_probs=158.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++.+|++.+..+ ..++..+            +....-+.++|+||||||||++||.|++.....    +-.|++++
T Consensus       135 ktL~dyvGQ~hlv~q-~gllrs~------------ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelS  197 (554)
T KOG2028|consen  135 KTLDDYVGQSHLVGQ-DGLLRSL------------IEQNRIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELS  197 (554)
T ss_pred             chHHHhcchhhhcCc-chHHHHH------------HHcCCCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEe
Confidence            467888888876555 2222212            112456789999999999999999999855432    23577777


Q ss_pred             cccccccccccchHHHHHHHHHcc--------CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE--------GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~--------~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                      +....       -..++++|++++        ..||||||||++...+|           +.||..+++|.|++|+||+.
T Consensus       198 At~a~-------t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP~VE~G~I~lIGATTE  259 (554)
T KOG2028|consen  198 ATNAK-------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLPHVENGDITLIGATTE  259 (554)
T ss_pred             ccccc-------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccceeccCceEEEecccC
Confidence            65432       346788888874        38999999999999888           89999999999999999999


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccc---cccHHHHHHHHHHHhhHhhhcc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHS---SCSMDAIAALIEKETTEKQRRE  387 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  387 (438)
                      |+...+   +.+|.+|+ .++.+.+++.++...||.+-+.-..+..+ .+..+..   .++.+.++.+....       .
T Consensus       260 NPSFql---n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser-~~~~l~n~s~~ve~siidyla~ls-------d  327 (554)
T KOG2028|consen  260 NPSFQL---NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSER-PTDPLPNSSMFVEDSIIDYLAYLS-------D  327 (554)
T ss_pred             CCccch---hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccc-cCCCCCCcchhhhHHHHHHHHHhc-------C
Confidence            998877   88899998 89999999999999999986664332111 1122222   34555555555433       5


Q ss_pred             ccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706          388 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  432 (438)
Q Consensus       388 ~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~  432 (438)
                      |+.|...|.+|.+......|-     .+.....++.+|++++++.
T Consensus       328 GDaR~aLN~Lems~~m~~tr~-----g~~~~~~lSidDvke~lq~  367 (554)
T KOG2028|consen  328 GDARAALNALEMSLSMFCTRS-----GQSSRVLLSIDDVKEGLQR  367 (554)
T ss_pred             chHHHHHHHHHHHHHHHHhhc-----CCcccceecHHHHHHHHhh
Confidence            667777888887754432221     1223457899999988763

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.9e-22  Score=177.33  Aligned_cols=199  Identities=17%  Similarity=0.245  Sum_probs=148.8

Q ss_pred             hhhhhhHHHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCC-CCCCceEEecCCCCCHHHHHHHHHHHHH--
Q 013706          148 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLY--  224 (438)
Q Consensus       148 ~~~~~~~~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~GppGtGKT~la~~la~~l~--  224 (438)
                      ..+.-...+...-|+.++--..+|+.+..+.....   ...+....... .-.+-+|++||||||||++.+++|+.+.  
T Consensus       128 n~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l---~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR  204 (423)
T KOG0744|consen  128 NHWYLPAAEFDGLWESLIYDSNLKERLLSYAASAL---LFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIR  204 (423)
T ss_pred             hheeccchhhhhhHHHHhhcccHHHHHHHHHHHHH---HHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence            33444556677788898888889999988755333   22222222111 1234588999999999999999999883  


Q ss_pred             HcCCcCCCCEEEeecccccccccccchHHHHHHHHHc------cC--cEEEEeCcccccCCCC----CCCchhHHHHHHH
Q 013706          225 MVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA------EG--GILFVDEAYRLIPMQK----ADDKDYGIEALEE  292 (438)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a------~~--~il~iDEid~l~~~~~----~~~~~~~~~~~~~  292 (438)
                      ..+....+.++++++..++++|++|+++.+.++|.+-      ++  -.++|||++++...|.    ++++..+.+++|+
T Consensus       205 ~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNa  284 (423)
T KOG0744|consen  205 TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNA  284 (423)
T ss_pred             ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHH
Confidence            2233345678999999999999999999999998764      34  3567899999987663    3355667899999


Q ss_pred             HHhhccC---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccc
Q 013706          293 IMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       293 ll~~~~~---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      +|++||.   ..-++|+|| .|-.+.+   |-|+.+|-|.+.++.+|+.+.+.+|++..+.+..
T Consensus       285 lLTQlDrlK~~~NvliL~T-SNl~~si---D~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~  344 (423)
T KOG0744|consen  285 LLTQLDRLKRYPNVLILAT-SNLTDSI---DVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI  344 (423)
T ss_pred             HHHHHHHhccCCCEEEEec-cchHHHH---HHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence            9999996   333444443 4444555   8899999999999999999999999999998764

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.88  E-value=1.6e-21  Score=170.24  Aligned_cols=172  Identities=22%  Similarity=0.275  Sum_probs=130.6

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      .+.|++.+|++.+|+++.=++...+.   +        ....-|+|||||||.|||++|..+|++++..-...++|.++-
T Consensus        22 P~~l~efiGQ~~vk~~L~ifI~AAk~---r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK   90 (332)
T COG2255          22 PKTLDEFIGQEKVKEQLQIFIKAAKK---R--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK   90 (332)
T ss_pred             cccHHHhcChHHHHHHHHHHHHHHHh---c--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence            35789999999999999987665431   1        346779999999999999999999999987333333443321


Q ss_pred             ecccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----------------
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----------------  299 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----------------  299 (438)
                                   ...+..++..- .+-||||||||++.+..           -..|...|++                 
T Consensus        91 -------------~gDlaaiLt~Le~~DVLFIDEIHrl~~~v-----------EE~LYpaMEDf~lDI~IG~gp~Arsv~  146 (332)
T COG2255          91 -------------PGDLAAILTNLEEGDVLFIDEIHRLSPAV-----------EEVLYPAMEDFRLDIIIGKGPAARSIR  146 (332)
T ss_pred             -------------hhhHHHHHhcCCcCCeEEEehhhhcChhH-----------HHHhhhhhhheeEEEEEccCCccceEe
Confidence                         12233444443 56899999999999743           3677788875                 


Q ss_pred             ---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHH
Q 013706          300 ---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI  376 (438)
Q Consensus       300 ---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (438)
                         ..+.+|+|||...+.     ..+|++||....++..|+.+|+.+|+.+.....           ..++++++...++
T Consensus       147 ldLppFTLIGATTr~G~l-----t~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-----------~i~i~~~~a~eIA  210 (332)
T COG2255         147 LDLPPFTLIGATTRAGML-----TNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-----------GIEIDEEAALEIA  210 (332)
T ss_pred             ccCCCeeEeeeccccccc-----cchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-----------CCCCChHHHHHHH
Confidence               246899998887765     677999999999999999999999999877543           3566778888888


Q ss_pred             HHHh
Q 013706          377 EKET  380 (438)
Q Consensus       377 ~~~~  380 (438)
                      ++.-
T Consensus       211 ~rSR  214 (332)
T COG2255         211 RRSR  214 (332)
T ss_pred             Hhcc
Confidence            7764

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.2e-21  Score=190.76  Aligned_cols=239  Identities=17%  Similarity=0.257  Sum_probs=176.6

Q ss_pred             HHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706          154 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  232 (438)
Q Consensus       154 ~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~  232 (438)
                      +.....-++ +--|++.+|++|.+++.....   .       .....+-++|+||||+|||++++.||+.++.       
T Consensus       314 l~~a~~iLd~dHYGLekVKeRIlEyLAV~~l---~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~R-------  376 (782)
T COG0466         314 LKKAEKILDKDHYGLEKVKERILEYLAVQKL---T-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGR-------  376 (782)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHHH---h-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCC-------
Confidence            333334444 457999999999998664321   1       1123456889999999999999999999987       


Q ss_pred             CEEEeecccccc---------cccccchHHHHHHHHHcc--CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--
Q 013706          233 RVTEVQRTDLVG---------EFVGHTGPKTRRRIKEAE--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--  299 (438)
Q Consensus       233 ~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~a~--~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--  299 (438)
                      .|+.++...+..         .|+|....++-+.+.+|.  +.+++|||||++.++.++++.       ++||+.+|-  
T Consensus       377 kfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQ  449 (782)
T COG0466         377 KFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQ  449 (782)
T ss_pred             CEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChH-------HHHHhhcCHhh
Confidence            888887654332         388888888888888874  689999999999998877665       556666652  


Q ss_pred             ---------------CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc-c
Q 013706          300 ---------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-L  363 (438)
Q Consensus       300 ---------------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~  363 (438)
                                     .+|.||+|.|.  ++.+   +.+|++|+ ++|+++.|+.+|..+|.++||-....  ..+|++ -
T Consensus       450 N~~F~DhYLev~yDLS~VmFiaTANs--l~tI---P~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~--~~~gL~~~  521 (782)
T COG0466         450 NNTFSDHYLEVPYDLSKVMFIATANS--LDTI---PAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQL--KEHGLKKG  521 (782)
T ss_pred             cCchhhccccCccchhheEEEeecCc--cccC---ChHHhcce-eeeeecCCChHHHHHHHHHhcchHHH--HHcCCCcc
Confidence                           46788887443  4433   88999999 99999999999999999999876543  334663 4


Q ss_pred             cccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          364 HSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                      ...++++++..++++|+.     .-.+|.|+..+...+|+++..+..+....  ...++..++++.+.
T Consensus       522 el~i~d~ai~~iI~~YTR-----EAGVR~LeR~i~ki~RK~~~~i~~~~~k~--~~~i~~~~l~~yLG  582 (782)
T COG0466         522 ELTITDEAIKDIIRYYTR-----EAGVRNLEREIAKICRKAAKKILLKKEKS--IVKIDEKNLKKYLG  582 (782)
T ss_pred             ceeecHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHHHHHHHHhcCccc--ceeeCHHHHHHHhC
Confidence            457899999999999983     34468888888888888877765422111  13677777777653

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.87  E-value=2.5e-22  Score=190.81  Aligned_cols=204  Identities=18%  Similarity=0.244  Sum_probs=158.0

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++|+|.+....++.+.++..              +..+..||+.|++||||.++|++|++    .+....+||+.+
T Consensus       241 ~y~f~~Iig~S~~m~~~~~~akr~--------------A~tdstVLi~GESGTGKElfA~~IH~----~S~R~~~PFIai  302 (560)
T COG3829         241 KYTFDDIIGESPAMLRVLELAKRI--------------AKTDSTVLILGESGTGKELFARAIHN----LSPRANGPFIAI  302 (560)
T ss_pred             ccchhhhccCCHHHHHHHHHHHhh--------------cCCCCcEEEecCCCccHHHHHHHHHh----cCcccCCCeEEE
Confidence            347899999999888888776544              56889999999999999999999999    555667899999


Q ss_pred             ecccc-----cccccccchHH--------HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC----
Q 013706          238 QRTDL-----VGEFVGHTGPK--------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----  300 (438)
Q Consensus       238 ~~~~~-----~~~~~g~~~~~--------~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----  300 (438)
                      +|+.+     .+.+||+....        ....|+.|.+|+||||||..|..           ..+..||+.++++    
T Consensus       303 NCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl-----------~LQaKLLRVLQEkei~r  371 (560)
T COG3829         303 NCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL-----------PLQAKLLRVLQEKEIER  371 (560)
T ss_pred             ecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCH-----------HHHHHHHHHHhhceEEe
Confidence            99863     45577763222        34678999999999999998876           4558999999863    


Q ss_pred             ---------CEEEEEecCChhHHHHhhhCcCcc----CCC-CcceeCCCCC--HHHHHHHHHHHHhcccccccccccccc
Q 013706          301 ---------KVVVIFAGYSEPMKRVIASNEGFC----RRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLH  364 (438)
Q Consensus       301 ---------~v~vi~~~~~~~~~~~~~~~p~l~----~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~  364 (438)
                               +|.+|+||+.+..+.+.  .-.+|    -|+ -.-|.+||+-  ++++..+...++.+...     .+...
T Consensus       372 vG~t~~~~vDVRIIAATN~nL~~~i~--~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~-----~~~~~  444 (560)
T COG3829         372 VGGTKPIPVDVRIIAATNRNLEKMIA--EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSR-----RYGRN  444 (560)
T ss_pred             cCCCCceeeEEEEEeccCcCHHHHHh--cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHH-----HcCCC
Confidence                     57999999888876553  32333    366 2234455554  48888999999987553     34333


Q ss_pred             -ccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          365 -SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       365 -~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                       ..++++++..+.++.|      |||.|+|+|++++++-.
T Consensus       445 v~~ls~~a~~~L~~y~W------PGNVRELeNviER~v~~  478 (560)
T COG3829         445 VKGLSPDALALLLRYDW------PGNVRELENVIERAVNL  478 (560)
T ss_pred             cccCCHHHHHHHHhCCC------CchHHHHHHHHHHHHhc
Confidence             3489999999999999      99999999999999863

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.87  E-value=8.5e-23  Score=194.66  Aligned_cols=207  Identities=21%  Similarity=0.264  Sum_probs=161.3

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      ....++|.+...+++.+.+..+              +....+||++|++||||.++||+|++    .+...++||+.++|
T Consensus       139 ~~~~liG~S~am~~l~~~i~kv--------------A~s~a~VLI~GESGtGKElvAr~IH~----~S~R~~~PFVavNc  200 (464)
T COG2204         139 LGGELVGESPAMQQLRRLIAKV--------------APSDASVLITGESGTGKELVARAIHQ----ASPRAKGPFIAVNC  200 (464)
T ss_pred             ccCCceecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHh----hCcccCCCceeeec
Confidence            5678999999999999987766              46788999999999999999999999    55566789999999


Q ss_pred             cccc-----ccccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706          240 TDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  300 (438)
Q Consensus       240 ~~~~-----~~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  300 (438)
                      ..+.     +++||+...       +-...|+.|.+|+||||||..|..           .++..||+.++++       
T Consensus       201 aAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl-----------~~Q~kLLRvLqe~~~~rvG~  269 (464)
T COG2204         201 AAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPL-----------ELQVKLLRVLQEREFERVGG  269 (464)
T ss_pred             ccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCH-----------HHHHHHHHHHHcCeeEecCC
Confidence            8643     457886432       233578999999999999999886           4458999999863       


Q ss_pred             ------CEEEEEecCChhHHHHhhh--CcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccccccccH
Q 013706          301 ------KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  369 (438)
Q Consensus       301 ------~v~vi~~~~~~~~~~~~~~--~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~  369 (438)
                            +|.||++|+.+..+.+...  .+.|..|+ -..|++|++-  .|++..++.+++.+...+   +| .-...++.
T Consensus       270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~---~~-~~~~~~s~  345 (464)
T COG2204         270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAE---LG-RPPKGFSP  345 (464)
T ss_pred             CcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHH---cC-CCCCCCCH
Confidence                  4678888877766544211  13444466 3355566665  489999999999987642   22 23456899


Q ss_pred             HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706          370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      +++..+..+.|      |||+|+|+|+++++.-...
T Consensus       346 ~a~~~L~~y~W------PGNVREL~N~ver~~il~~  375 (464)
T COG2204         346 EALAALLAYDW------PGNVRELENVVERAVILSE  375 (464)
T ss_pred             HHHHHHHhCCC------ChHHHHHHHHHHHHHhcCC
Confidence            99999999999      9999999999999987653

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.87  E-value=6.7e-22  Score=185.35  Aligned_cols=210  Identities=22%  Similarity=0.246  Sum_probs=161.2

Q ss_pred             HHHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706          154 MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  233 (438)
Q Consensus       154 ~~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~  233 (438)
                      ..+....+.+|||.+....++.+.++.+              +.+...||+.|++||||..+||+|++    .+.....|
T Consensus       215 ~~~~~~~~~~iIG~S~am~~ll~~i~~V--------------A~Sd~tVLi~GETGtGKElvAraIH~----~S~R~~kP  276 (550)
T COG3604         215 LSEVVLEVGGIIGRSPAMRQLLKEIEVV--------------AKSDSTVLIRGETGTGKELVARAIHQ----LSPRRDKP  276 (550)
T ss_pred             ccchhcccccceecCHHHHHHHHHHHHH--------------hcCCCeEEEecCCCccHHHHHHHHHh----hCcccCCC
Confidence            3444557789999999999998887766              56788999999999999999999999    44556679


Q ss_pred             EEEeecccc-----cccccccchHHH-------HHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-
Q 013706          234 VTEVQRTDL-----VGEFVGHTGPKT-------RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-  300 (438)
Q Consensus       234 ~~~~~~~~~-----~~~~~g~~~~~~-------~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-  300 (438)
                      |+.+||+.+     .++.||+.....       +..|+.|.+|+||+|||..|...-|           .+||+.++++ 
T Consensus       277 fV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQ-----------aKLLRvLQegE  345 (550)
T COG3604         277 FVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQ-----------AKLLRVLQEGE  345 (550)
T ss_pred             ceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHH-----------HHHHHHHhhcc
Confidence            999999874     456888743332       3467888999999999999987555           8999999863 


Q ss_pred             ------------CEEEEEecCChhHHHHhhhCcC----ccCCCC-cceeCCCCC--HHHHHHHHHHHHhccccccccccc
Q 013706          301 ------------KVVVIFAGYSEPMKRVIASNEG----FCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGF  361 (438)
Q Consensus       301 ------------~v~vi~~~~~~~~~~~~~~~p~----l~~R~~-~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~  361 (438)
                                  +|.||+|||.+-...+.  +-.    |..|+. .=+.+||+-  .+++..+.+.|+.+...+   +|.
T Consensus       346 ieRvG~~r~ikVDVRiIAATNRDL~~~V~--~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~---~gr  420 (550)
T COG3604         346 IERVGGDRTIKVDVRVIAATNRDLEEMVR--DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRR---LGR  420 (550)
T ss_pred             eeecCCCceeEEEEEEEeccchhHHHHHH--cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHh---cCC
Confidence                        47899998877766553  322    333652 223445554  378888888888887642   232


Q ss_pred             cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          362 KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      . ...++.++++.+.++.|      |||+|+|+|+|++|+-.+
T Consensus       421 ~-~l~ls~~Al~~L~~y~w------PGNVRELen~veRavlla  456 (550)
T COG3604         421 A-ILSLSAEALELLSSYEW------PGNVRELENVVERAVLLA  456 (550)
T ss_pred             c-ccccCHHHHHHHHcCCC------CCcHHHHHHHHHHHHHHh
Confidence            1 34578999999999999      999999999999999877

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.86  E-value=6.7e-21  Score=197.96  Aligned_cols=242  Identities=18%  Similarity=0.240  Sum_probs=169.8

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEEE
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE  236 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~  236 (438)
                      .++.++|.+....++.+++.                .....+++|+||||||||++|+.+|+.+....+   .....++.
T Consensus       180 ~l~~~igr~~ei~~~~~~L~----------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~  243 (731)
T TIGR02639       180 KIDPLIGREDELERTIQVLC----------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS  243 (731)
T ss_pred             CCCcccCcHHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence            56789999987776665422                235678999999999999999999998843222   23457888


Q ss_pred             eeccccc--ccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706          237 VQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  311 (438)
Q Consensus       237 ~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~  311 (438)
                      ++.+.+.  .+|.|+.+..++++|+++.   ++||||||+|.+.+.+...+.+  ..+.+.|...++++.+.+|++||..
T Consensus       244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~~g~i~~IgaTt~~  321 (731)
T TIGR02639       244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALSSGKLRCIGSTTYE  321 (731)
T ss_pred             ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHhCCCeEEEEecCHH
Confidence            8887776  4789999999999998763   5899999999998765422221  2345778888999999999999997


Q ss_pred             hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccccc
Q 013706          312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  391 (438)
Q Consensus       312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~  391 (438)
                      .+...+..||+|.|||. .|+++.|+.+++.+|++........       .....++++++..++.....+ +.+-.--.
T Consensus       322 e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~-------~~~v~i~~~al~~~~~ls~ry-i~~r~~P~  392 (731)
T TIGR02639       322 EYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEE-------FHHVKYSDEALEAAVELSARY-INDRFLPD  392 (731)
T ss_pred             HHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHh-------ccCcccCHHHHHHHHHhhhcc-cccccCCH
Confidence            77777777999999994 7999999999999999987765321       112356777777766543210 00000012


Q ss_pred             chHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          392 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       392 ~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      ....+++.|......+-.     ..+...|+.+|+.+++..+
T Consensus       393 kai~lld~a~a~~~~~~~-----~~~~~~v~~~~i~~~i~~~  429 (731)
T TIGR02639       393 KAIDVIDEAGASFRLRPK-----AKKKANVSVKDIENVVAKM  429 (731)
T ss_pred             HHHHHHHHhhhhhhcCcc-----cccccccCHHHHHHHHHHH
Confidence            224555655543321100     1123458888888887765

>TIGR00763 lon ATP-dependent protease La

Probab=99.86  E-value=1.2e-20  Score=197.12  Aligned_cols=240  Identities=19%  Similarity=0.266  Sum_probs=167.8

Q ss_pred             HHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706          154 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  232 (438)
Q Consensus       154 ~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~  232 (438)
                      +......++ ++.|++.+++.|.+++....   .+       +....++++|+||||||||++|+++|+.++.       
T Consensus       311 ~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~---~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-------  373 (775)
T TIGR00763       311 LKRAKEILDEDHYGLKKVKERILEYLAVQK---LR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNR-------  373 (775)
T ss_pred             HHHHHHHhhhhcCChHHHHHHHHHHHHHHH---hh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcC-------
Confidence            344455555 48899999999998755321   11       1123457999999999999999999999876       


Q ss_pred             CEEEeecccc---------cccccccchHHHHHHHHHc--cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--
Q 013706          233 RVTEVQRTDL---------VGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--  299 (438)
Q Consensus       233 ~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--  299 (438)
                      +++.++....         ...|+|.....+.+.|..+  .+.||||||||++.+..+++.       .+.|++.+|.  
T Consensus       374 ~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~-------~~aLl~~ld~~~  446 (775)
T TIGR00763       374 KFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDP-------ASALLEVLDPEQ  446 (775)
T ss_pred             CeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCH-------HHHHHHhcCHHh
Confidence            6666654432         2357888777888888776  347999999999997655322       2556665542  


Q ss_pred             ---------------CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc-c
Q 013706          300 ---------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-L  363 (438)
Q Consensus       300 ---------------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~  363 (438)
                                     +++++|+|+|.  .+.+   +|+|++|| .+|+|++|+.+++.+|++.++.....  ...++. .
T Consensus       447 ~~~f~d~~~~~~~d~s~v~~I~TtN~--~~~i---~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~--~~~~l~~~  518 (775)
T TIGR00763       447 NNAFSDHYLDVPFDLSKVIFIATANS--IDTI---PRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKAL--EDHGLKPD  518 (775)
T ss_pred             cCccccccCCceeccCCEEEEEecCC--chhC---CHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHH--HHcCCCcc
Confidence                           45777777554  3334   89999999 68999999999999999998853321  112331 2


Q ss_pred             cccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccC-CCCCh--hhhhhccHHHHHHHH
Q 013706          364 HSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-DCLDT--DELRTITLEDLEAGL  430 (438)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~-~~~~~--~~~~~i~~~d~~~a~  430 (438)
                      ...++++++..+++.++     +..++|.|+..++...++++.++.. +....  .....++.++++..+
T Consensus       519 ~~~~~~~~l~~i~~~~~-----~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~l  583 (775)
T TIGR00763       519 ELKITDEALLLLIKYYT-----REAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYL  583 (775)
T ss_pred             eEEECHHHHHHHHHhcC-----hhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhc
Confidence            34678999999999765     3456799999999999888877653 22111  112478888877664

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.86  E-value=4.4e-21  Score=191.44  Aligned_cols=213  Identities=21%  Similarity=0.272  Sum_probs=154.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC--Cc-CCCCEE
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--IL-PTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~--~~-~~~~~~  235 (438)
                      ..|++++|++...+.++..+.                ...+.++||+||||||||++|+++++.+....  .. ...+|+
T Consensus        62 ~~f~~iiGqs~~i~~l~~al~----------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi  125 (531)
T TIGR02902        62 KSFDEIIGQEEGIKALKAALC----------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV  125 (531)
T ss_pred             CCHHHeeCcHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence            468899999998887775311                23567999999999999999999998765322  12 246889


Q ss_pred             Eeecccc-------ccccccc--------------ch--HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHH
Q 013706          236 EVQRTDL-------VGEFVGH--------------TG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEE  292 (438)
Q Consensus       236 ~~~~~~~-------~~~~~g~--------------~~--~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~  292 (438)
                      +++++..       ....+|.              +.  ......+.++.++||||||++.|.+..|           +.
T Consensus       126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q-----------~~  194 (531)
T TIGR02902       126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQM-----------NK  194 (531)
T ss_pred             EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHH-----------HH
Confidence            8887631       1112221              11  1123467788999999999999998554           77


Q ss_pred             HHhhccCC------------------------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHH
Q 013706          293 IMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA  342 (438)
Q Consensus       293 ll~~~~~~------------------------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~  342 (438)
                      |+..|+++                              ++.+|++|++++. .+   +|++++|+ ..|.|++++.+|+.
T Consensus       195 LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~-~L---~paLrsR~-~~I~f~pL~~eei~  269 (531)
T TIGR02902       195 LLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE-EI---PPALRSRC-VEIFFRPLLDEEIK  269 (531)
T ss_pred             HHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc-cC---ChHHhhhh-heeeCCCCCHHHHH
Confidence            77776542                              3467777766554 33   89999998 78899999999999


Q ss_pred             HHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhcc
Q 013706          343 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT  422 (438)
Q Consensus       343 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~  422 (438)
                      +|+++.+++..           ..++++++..+..+.|        |+|++.++++.|...+..+         +...|+
T Consensus       270 ~Il~~~a~k~~-----------i~is~~al~~I~~y~~--------n~Rel~nll~~Aa~~A~~~---------~~~~It  321 (531)
T TIGR02902       270 EIAKNAAEKIG-----------INLEKHALELIVKYAS--------NGREAVNIVQLAAGIALGE---------GRKRIL  321 (531)
T ss_pred             HHHHHHHHHcC-----------CCcCHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHhhC---------CCcEEc
Confidence            99999987642           3467788887666543        6899999999998766322         224689


Q ss_pred             HHHHHHHHH
Q 013706          423 LEDLEAGLK  431 (438)
Q Consensus       423 ~~d~~~a~~  431 (438)
                      .+|++.++.
T Consensus       322 ~~dI~~vl~  330 (531)
T TIGR02902       322 AEDIEWVAE  330 (531)
T ss_pred             HHHHHHHhC
Confidence            999998875

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.86  E-value=2.1e-20  Score=175.32  Aligned_cols=164  Identities=15%  Similarity=0.226  Sum_probs=112.7

Q ss_pred             cCcEEEEeCcccccCCCCCCC-chhHHHHHHHHHhhccC------------CCEEEEEecC---ChhHHHHhhhCcCccC
Q 013706          262 EGGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMDG------------GKVVVIFAGY---SEPMKRVIASNEGFCR  325 (438)
Q Consensus       262 ~~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~~~~------------~~v~vi~~~~---~~~~~~~~~~~p~l~~  325 (438)
                      ..||+||||||+++.+.++.. +-.+..+++.||..+++            .++.||+++.   ..+.+ +   -|.|.+
T Consensus       249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~D-l---IPEl~G  324 (443)
T PRK05201        249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSD-L---IPELQG  324 (443)
T ss_pred             cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhh-c---cHHHhC
Confidence            569999999999998754333 33445689999999997            4678888873   22222 3   699999


Q ss_pred             CCCcceeCCCCCHHHHHHHH----HHHHhccccccccccccccccccHHHHHHHHHHHhhH-hhhccccccchHHHHHHH
Q 013706          326 RVTKFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-KQRREMNGGLVDPMLVNA  400 (438)
Q Consensus       326 R~~~~i~~~~~~~~e~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~l~~~~~~a  400 (438)
                      ||+.++.+.+++.+++..||    ...+++.......+|  +...++++++..+++..... .......+|.|+.++++.
T Consensus       325 R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~eg--v~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~  402 (443)
T PRK05201        325 RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEG--VTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKL  402 (443)
T ss_pred             ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcC--cEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence            99999999999999999999    334444332222223  44567899999999877531 111234479999999999


Q ss_pred             HHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          401 RENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       401 ~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      ......-....   ......|+.+-+.+.+..+.
T Consensus       403 L~d~~Fe~p~~---~~~~v~I~~~~V~~~l~~l~  433 (443)
T PRK05201        403 LEDISFEAPDM---SGETVTIDAAYVDEKLGDLV  433 (443)
T ss_pred             HHHHhccCCCC---CCCEEEECHHHHHHHHHHHH
Confidence            88764333211   12335678877777776553

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=3.8e-21  Score=186.37  Aligned_cols=211  Identities=20%  Similarity=0.296  Sum_probs=163.9

Q ss_pred             hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706          163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  242 (438)
Q Consensus       163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~  242 (438)
                      +--|++++|++|.+++..-...          +....+-++|+||||+|||++||.||+.|+.       .|+.++-..+
T Consensus       412 DHYgm~dVKeRILEfiAV~kLr----------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-------kFfRfSvGG~  474 (906)
T KOG2004|consen  412 DHYGMEDVKERILEFIAVGKLR----------GSVQGKILCFVGPPGVGKTSIAKSIARALNR-------KFFRFSVGGM  474 (906)
T ss_pred             cccchHHHHHHHHHHHHHHhhc----------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-------ceEEEecccc
Confidence            4579999999999986633211          1224566889999999999999999999987       7777766543


Q ss_pred             c---------ccccccchHHHHHHHHHc--cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------------
Q 013706          243 V---------GEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------  299 (438)
Q Consensus       243 ~---------~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------  299 (438)
                      .         ..|+|....++-+.++..  .+.+++|||||++.+.-|+++.       ++||+.+|-            
T Consensus       475 tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDHYLd  547 (906)
T KOG2004|consen  475 TDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDHYLD  547 (906)
T ss_pred             ccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhhccc
Confidence            2         238888888888888875  5689999999999976666554       566666652            


Q ss_pred             -----CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccc-cccccccHHHHH
Q 013706          300 -----GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIA  373 (438)
Q Consensus       300 -----~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~~~  373 (438)
                           .+|.|||+.|  .++.+   .|+|++|+ ++|+++.|..+|...|.++||-....  ..+|+ .-..+++++++.
T Consensus       548 Vp~DLSkVLFicTAN--~idtI---P~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~--~~~gl~~e~v~is~~al~  619 (906)
T KOG2004|consen  548 VPVDLSKVLFICTAN--VIDTI---PPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQAL--KDCGLKPEQVKISDDALL  619 (906)
T ss_pred             cccchhheEEEEecc--ccccC---Chhhhhhh-heeeccCccHHHHHHHHHHhhhhHHH--HHcCCCHHhcCccHHHHH
Confidence                 4688888844  44444   89999999 99999999999999999999987653  34566 345678999999


Q ss_pred             HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccC
Q 013706          374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF  410 (438)
Q Consensus       374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~  410 (438)
                      .++++|+.     .-.+|.|+.-+++..|+++.++..
T Consensus       620 ~lI~~Ycr-----EaGVRnLqk~iekI~Rk~Al~vv~  651 (906)
T KOG2004|consen  620 ALIERYCR-----EAGVRNLQKQIEKICRKVALKVVE  651 (906)
T ss_pred             HHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999973     334688888889999998888754

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.9e-21  Score=175.90  Aligned_cols=211  Identities=19%  Similarity=0.221  Sum_probs=148.7

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      -|++++-...++..|+++.........+        ..+-.|||||||||||||++||-||...+...       -.+.+
T Consensus       353 pl~~ViL~psLe~Rie~lA~aTaNTK~h--------~apfRNilfyGPPGTGKTm~ArelAr~SGlDY-------A~mTG  417 (630)
T KOG0742|consen  353 PLEGVILHPSLEKRIEDLAIATANTKKH--------QAPFRNILFYGPPGTGKTMFARELARHSGLDY-------AIMTG  417 (630)
T ss_pred             CcCCeecCHHHHHHHHHHHHHhcccccc--------cchhhheeeeCCCCCCchHHHHHHHhhcCCce-------ehhcC
Confidence            4888999999999999986654433322        33667999999999999999999999776422       22222


Q ss_pred             ccccccccc-cchHHHHHHHHHc----cCcEEEEeCcccccCCCCCC-CchhHHHHHHHHHhhcc--CCCEEEEEecCCh
Q 013706          240 TDLVGEFVG-HTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMD--GGKVVVIFAGYSE  311 (438)
Q Consensus       240 ~~~~~~~~g-~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~--~~~v~vi~~~~~~  311 (438)
                      .++.-  +| +.-.++.++|+=+    +|-+|||||+|.++..|... -++..+.++|.||-.--  +.+++++++|+..
T Consensus       418 GDVAP--lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrp  495 (630)
T KOG0742|consen  418 GDVAP--LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRP  495 (630)
T ss_pred             CCccc--cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCc
Confidence            22211  12 2345777888765    35699999999999887754 36667788999887763  3778888887655


Q ss_pred             hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccc---------------ccccccccccHHHHHHHH
Q 013706          312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLL---------------YGFKLHSSCSMDAIAALI  376 (438)
Q Consensus       312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~  376 (438)
                      .-.     |.++-+|||.+++||.|..||+..++..|+++.......               .++++........+.+.+
T Consensus       496 gdl-----DsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaA  570 (630)
T KOG0742|consen  496 GDL-----DSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAA  570 (630)
T ss_pred             cch-----hHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHH
Confidence            443     778889999999999999999999999999876422221               123344434444555555


Q ss_pred             HHHhhHhhhccccccchHHHHH
Q 013706          377 EKETTEKQRREMNGGLVDPMLV  398 (438)
Q Consensus       377 ~~~~~~~~~~~~n~~~l~~~~~  398 (438)
                      ....      +..||++-.++-
T Consensus       571 kkTe------GfSGREiakLva  586 (630)
T KOG0742|consen  571 KKTE------GFSGREIAKLVA  586 (630)
T ss_pred             Hhcc------CCcHHHHHHHHH
Confidence            5444      667888877754

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.85  E-value=3.5e-20  Score=177.85  Aligned_cols=259  Identities=18%  Similarity=0.260  Sum_probs=169.3

Q ss_pred             hhHHHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhcCCC---CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          152 AKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK---VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       152 ~~~~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      ....+....+++ ++|++.+++.+...+.   .+.++......   ....+..++||+||||||||++|+++|+.+..  
T Consensus        60 ~~p~~i~~~L~~~ViGq~~ak~~l~~av~---~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~--  134 (412)
T PRK05342         60 PTPKEIKAHLDQYVIGQERAKKVLSVAVY---NHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV--  134 (412)
T ss_pred             CCHHHHHHHHhhHeeChHHHHHHHHHHHH---HHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC--
Confidence            355667777775 8999999998865432   12122111111   11225678999999999999999999998865  


Q ss_pred             CcCCCCEEEeeccccc-ccccccchHH-HHHH-------HHHccCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHh
Q 013706          228 ILPTDRVTEVQRTDLV-GEFVGHTGPK-TRRR-------IKEAEGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMS  295 (438)
Q Consensus       228 ~~~~~~~~~~~~~~~~-~~~~g~~~~~-~~~~-------~~~a~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~  295 (438)
                           +|+.++++.+. ..|+|+.... +...       ++.+.++||||||||++.+++.+.+   +-.+..+++.||+
T Consensus       135 -----pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~  209 (412)
T PRK05342        135 -----PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLK  209 (412)
T ss_pred             -----CceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHH
Confidence                 88888887765 3588875433 3333       3456789999999999998743211   2233468889999


Q ss_pred             hccCC-----------------------CEEEEEecCChhH----------------------------HHHh-------
Q 013706          296 VMDGG-----------------------KVVVIFAGYSEPM----------------------------KRVI-------  317 (438)
Q Consensus       296 ~~~~~-----------------------~v~vi~~~~~~~~----------------------------~~~~-------  317 (438)
                      .||+.                       ++.+|++++-...                            ..++       
T Consensus       210 ~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~d  289 (412)
T PRK05342        210 ILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPED  289 (412)
T ss_pred             HHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHH
Confidence            99742                       1233322210000                            0111       


Q ss_pred             --h--hCcCccCCCCcceeCCCCCHHHHHHHHHH----HHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706          318 --A--SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  389 (438)
Q Consensus       318 --~--~~p~l~~R~~~~i~~~~~~~~e~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  389 (438)
                        .  ..|+|..|++.++.|.+++.+++.+|+..    .+++..+.....  .+...++++++..+++..+    .....
T Consensus       290 L~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~--~i~L~~t~~al~~Ia~~~~----~~~~G  363 (412)
T PRK05342        290 LIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMD--GVELEFTDEALEAIAKKAI----ERKTG  363 (412)
T ss_pred             HHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--CcEEEECHHHHHHHHHhCC----CCCCC
Confidence              0  15899999999999999999999999973    443332211112  3456678999999998643    12455


Q ss_pred             ccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHH
Q 013706          390 GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA  428 (438)
Q Consensus       390 ~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~  428 (438)
                      +|.|+.++++.++.....+....  ......|+.+++.+
T Consensus       364 AR~Lrriie~~l~~~~~~~p~~~--~~~~v~I~~~~v~~  400 (412)
T PRK05342        364 ARGLRSILEEILLDVMFELPSRE--DVEKVVITKEVVEG  400 (412)
T ss_pred             CchHHHHHHHHhHHHHHhccccC--CCceEEECHHHhcc
Confidence            79999999999998877665321  12235677777754

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.85  E-value=6.2e-20  Score=172.09  Aligned_cols=164  Identities=14%  Similarity=0.218  Sum_probs=112.8

Q ss_pred             cCcEEEEeCcccccCCCCCCCc-hhHHHHHHHHHhhccC------------CCEEEEEecC---ChhHHHHhhhCcCccC
Q 013706          262 EGGILFVDEAYRLIPMQKADDK-DYGIEALEEIMSVMDG------------GKVVVIFAGY---SEPMKRVIASNEGFCR  325 (438)
Q Consensus       262 ~~~il~iDEid~l~~~~~~~~~-~~~~~~~~~ll~~~~~------------~~v~vi~~~~---~~~~~~~~~~~p~l~~  325 (438)
                      +.||+||||||+++.+..+... -.+..+++.||..+++            .++.+|+++.   ..+.+ +   -|.|..
T Consensus       247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~D-l---IPEl~G  322 (441)
T TIGR00390       247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSD-L---IPELQG  322 (441)
T ss_pred             cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhh-c---cHHHhC
Confidence            5599999999999986643333 3445689999999997            4678888873   22222 3   699999


Q ss_pred             CCCcceeCCCCCHHHHHHHH----HHHHhccccccccccccccccccHHHHHHHHHHHhhH-hhhccccccchHHHHHHH
Q 013706          326 RVTKFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-KQRREMNGGLVDPMLVNA  400 (438)
Q Consensus       326 R~~~~i~~~~~~~~e~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~l~~~~~~a  400 (438)
                      ||+.++.+.+++.+++..||    ...+++.......+  .+...++++++.++++..... .......+|.|+.++++.
T Consensus       323 R~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~e--gv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~  400 (441)
T TIGR00390       323 RFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTE--GVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERL  400 (441)
T ss_pred             ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhc--CcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence            99999999999999999999    33333333221122  344567899999999876521 111234479999999999


Q ss_pred             HHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          401 RENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       401 ~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      ......-....   ......|+.+-+.+.+..+.
T Consensus       401 l~d~~fe~p~~---~~~~v~I~~~~V~~~l~~~~  431 (441)
T TIGR00390       401 LEDISFEAPDL---SGQNITIDADYVSKKLGALV  431 (441)
T ss_pred             HHHHHhcCCCC---CCCEEEECHHHHHhHHHHHH
Confidence            88764333221   12345688888877776654

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.85  E-value=1.5e-20  Score=183.27  Aligned_cols=184  Identities=25%  Similarity=0.358  Sum_probs=141.2

Q ss_pred             HHHhhhcChHHHHHH---HHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706          159 NELSNIVGLHELKIQ---LRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~  235 (438)
                      ..+++++|++.+...   +.+++.                ...+.+++|+||||||||++|+++++.+..       .++
T Consensus         9 ~~l~d~vGq~~~v~~~~~L~~~i~----------------~~~~~~ilL~GppGtGKTtLA~~ia~~~~~-------~~~   65 (413)
T PRK13342          9 KTLDEVVGQEHLLGPGKPLRRMIE----------------AGRLSSMILWGPPGTGKTTLARIIAGATDA-------PFE   65 (413)
T ss_pred             CCHHHhcCcHHHhCcchHHHHHHH----------------cCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEE
Confidence            468899999988665   655532                224568999999999999999999997754       677


Q ss_pred             EeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEec
Q 013706          236 EVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG  308 (438)
Q Consensus       236 ~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~  308 (438)
                      .+++...       ....++.+++.+       ++.||||||+|.+....+           +.|+..++++.+++|++|
T Consensus        66 ~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q-----------~~LL~~le~~~iilI~at  127 (413)
T PRK13342         66 ALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQ-----------DALLPHVEDGTITLIGAT  127 (413)
T ss_pred             EEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHH-----------HHHHHHhhcCcEEEEEeC
Confidence            7776532       123444555544       558999999999976443           789999999999999998


Q ss_pred             CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706          309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  388 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (438)
                      +.++...+   ++++++|+ ..+.|++++.+++..++++.+.....     ++   ..++++++..+....       .|
T Consensus       128 t~n~~~~l---~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~-----~~---i~i~~~al~~l~~~s-------~G  188 (413)
T PRK13342        128 TENPSFEV---NPALLSRA-QVFELKPLSEEDIEQLLKRALEDKER-----GL---VELDDEALDALARLA-------NG  188 (413)
T ss_pred             CCChhhhc---cHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc-----CC---CCCCHHHHHHHHHhC-------CC
Confidence            87776655   89999999 89999999999999999998876321     11   246778887777654       68


Q ss_pred             cccchHHHHHHHHH
Q 013706          389 NGGLVDPMLVNARE  402 (438)
Q Consensus       389 n~~~l~~~~~~a~~  402 (438)
                      +.|.+.++++.+..
T Consensus       189 d~R~aln~Le~~~~  202 (413)
T PRK13342        189 DARRALNLLELAAL  202 (413)
T ss_pred             CHHHHHHHHHHHHH
Confidence            88999999988754

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.84  E-value=6.9e-21  Score=178.52  Aligned_cols=208  Identities=22%  Similarity=0.299  Sum_probs=163.0

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...+++++|.+..-+++.+.++..              +....+||++|++||||+.+|+.|+.....  . ...||+.+
T Consensus        74 ~~~~~~LIG~~~~~~~~~eqik~~--------------ap~~~~vLi~GetGtGKel~A~~iH~~s~r--~-~~~PFI~~  136 (403)
T COG1221          74 SEALDDLIGESPSLQELREQIKAY--------------APSGLPVLIIGETGTGKELFARLIHALSAR--R-AEAPFIAF  136 (403)
T ss_pred             chhhhhhhccCHHHHHHHHHHHhh--------------CCCCCcEEEecCCCccHHHHHHHHHHhhhc--c-cCCCEEEE
Confidence            356788999998777777765543              457789999999999999999999943332  1 67899999


Q ss_pred             eccccc-----ccccccc-------hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----
Q 013706          238 QRTDLV-----GEFVGHT-------GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----  300 (438)
Q Consensus       238 ~~~~~~-----~~~~g~~-------~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----  300 (438)
                      ||+.+.     .+.||+.       ...-..+|+.|.+|+||+|||+.|.+..|           ..|++.+|++     
T Consensus       137 NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q-----------~kLl~~le~g~~~rv  205 (403)
T COG1221         137 NCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQ-----------EKLLRVLEEGEYRRV  205 (403)
T ss_pred             EHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHH-----------HHHHHHHHcCceEec
Confidence            998743     2355542       23344689999999999999999998665           8999999863     


Q ss_pred             --------CEEEEEecCChhHHHHhhhCcCccC-CCCcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccH
Q 013706          301 --------KVVVIFAGYSEPMKRVIASNEGFCR-RVTKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM  369 (438)
Q Consensus       301 --------~v~vi~~~~~~~~~~~~~~~p~l~~-R~~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~  369 (438)
                              +|.+|+||+.+.-..++.. ..|.+ |+...|++|++..  +|+..++..+++....+   .+..+... ++
T Consensus       206 G~~~~~~~dVRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~---l~~~~~~~-~~  280 (403)
T COG1221         206 GGSQPRPVDVRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARR---LGLPLSVD-SP  280 (403)
T ss_pred             CCCCCcCCCceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHH---cCCCCCCC-CH
Confidence                    5789999988887777654 45666 7799999999985  78888999999887642   23333332 36


Q ss_pred             HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +++..+..+.|      +||+|+|+|+|++++-.+
T Consensus       281 ~a~~~L~~y~~------pGNirELkN~Ve~~~~~~  309 (403)
T COG1221         281 EALRALLAYDW------PGNIRELKNLVERAVAQA  309 (403)
T ss_pred             HHHHHHHhCCC------CCcHHHHHHHHHHHHHHh
Confidence            89999999999      999999999999998776

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.84  E-value=2.7e-21  Score=185.27  Aligned_cols=131  Identities=33%  Similarity=0.389  Sum_probs=109.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   80 (438)
                      .+|.|+|||||.++.++++++|++    +|+++|+.+ .-+.||||||+++|+..++.+|+++|||++.+|.+|.+|||.
T Consensus        76 ~~g~tlLHWAAiNNrl~v~r~li~----~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHl  151 (600)
T KOG0509|consen   76 REGVTLLHWAAINNRLDVARYLIS----HGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHL  151 (600)
T ss_pred             cCCccceeHHHHcCcHHHHHHHHH----cCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHH
Confidence            478899999999999999999998    788899888 558899999999999999999999999999999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      |+    ..++..++-+|+.++++++++|.+|+|||+++|.++.... +.+|++.++.....
T Consensus       152 a~----~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~-v~~LL~f~a~~~~~  207 (600)
T KOG0509|consen  152 AA----QFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALF-VRRLLKFGASLLLT  207 (600)
T ss_pred             HH----HhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHH-HHHHHHhccccccc
Confidence            99    7788889999998899999999999999966666554444 66666655544433

>PHA02791 ankyrin-like protein; Provisional

Probab=99.84  E-value=9.8e-21  Score=173.68  Aligned_cols=126  Identities=22%  Similarity=0.193  Sum_probs=81.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCC-cHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGM-TPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A   81 (438)
                      +|+||||+|+..|+.++|++|++    .|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|+ ||||+|
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~----~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~A  135 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLF----SGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA  135 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHH
Confidence            46677777777777777777776    5677777777777777777777777777777777777776666664 666666


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccC-CCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d-~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      +    ..|+.+++++|+.++.+.  .| ..|.||| |.|+..++.+++++|+.++++..
T Consensus       136 a----~~g~~eivk~LL~~~~~~--~d~~~g~TpL-h~Aa~~g~~eiv~lLL~~gAd~n  187 (284)
T PHA02791        136 V----MLNDVSIVSYFLSEIPST--FDLAILLSCI-HITIKNGHVDMMILLLDYMTSTN  187 (284)
T ss_pred             H----HcCCHHHHHHHHhcCCcc--cccccCccHH-HHHHHcCCHHHHHHHHHCCCCCC
Confidence            6    555566666666554322  12 2356666 44444556666666666655433

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.84  E-value=3.2e-20  Score=189.47  Aligned_cols=191  Identities=21%  Similarity=0.332  Sum_probs=140.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+......+.+.+.             ....++++||||||||||++|+++|+.+..       .++.++
T Consensus        25 ~tldd~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~-------~f~~ln   84 (725)
T PRK13341         25 RTLEEFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRA-------HFSSLN   84 (725)
T ss_pred             CcHHHhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcC-------cceeeh
Confidence            468899999988754332222121             234578999999999999999999997654       566666


Q ss_pred             cccccccccccchHHHHHHHHH--------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~--------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                      +....       .+.++..++.        ....+|||||+|.+....|           +.|+..++++.+++|++|+.
T Consensus        85 a~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ-----------daLL~~lE~g~IiLI~aTTe  146 (725)
T PRK13341         85 AVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ-----------DALLPWVENGTITLIGATTE  146 (725)
T ss_pred             hhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH-----------HHHHHHhcCceEEEEEecCC
Confidence            54211       1122222222        1347999999999976444           78899999999999999988


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccc-cccccccHHHHHHHHHHHhhHhhhcccc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMN  389 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n  389 (438)
                      ++...+   ++++++|+ ..+.|++++.+++..++++.+.+...     ++ .....++++++..++...       +||
T Consensus       147 np~~~l---~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~-----~~g~~~v~I~deaL~~La~~s-------~GD  210 (725)
T PRK13341        147 NPYFEV---NKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKER-----GYGDRKVDLEPEAEKHLVDVA-------NGD  210 (725)
T ss_pred             ChHhhh---hhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHh-----hcCCcccCCCHHHHHHHHHhC-------CCC
Confidence            887666   78999996 78999999999999999999874321     11 123457888988888764       799


Q ss_pred             ccchHHHHHHHHHH
Q 013706          390 GGLVDPMLVNAREN  403 (438)
Q Consensus       390 ~~~l~~~~~~a~~~  403 (438)
                      .|.+.++++.+...
T Consensus       211 ~R~lln~Le~a~~~  224 (725)
T PRK13341        211 ARSLLNALELAVES  224 (725)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988753

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.84  E-value=8.2e-20  Score=172.06  Aligned_cols=187  Identities=20%  Similarity=0.278  Sum_probs=129.3

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++.+++++..++....           .....+.+++|+||||||||++|+++|+++..       .+.....
T Consensus         2 ~~~~~iG~~~~~~~l~~~l~~~~-----------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-------~~~~~~~   63 (305)
T TIGR00635         2 LLAEFIGQEKVKEQLQLFIEAAK-----------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGV-------NLKITSG   63 (305)
T ss_pred             CHHHHcCHHHHHHHHHHHHHHHH-----------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEecc
Confidence            58899999999999988754321           11235678999999999999999999998764       3333332


Q ss_pred             ccccccccccchHHHHHHHHH-ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC------------------
Q 013706          240 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------  300 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~-a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------------  300 (438)
                      +...      ....+...+.. ..+.+|||||+|.+.+..+           ..|+..|++.                  
T Consensus        64 ~~~~------~~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~-----------e~l~~~~~~~~~~~v~~~~~~~~~~~~~  126 (305)
T TIGR00635        64 PALE------KPGDLAAILTNLEEGDVLFIDEIHRLSPAVE-----------ELLYPAMEDFRLDIVIGKGPSARSVRLD  126 (305)
T ss_pred             chhc------CchhHHHHHHhcccCCEEEEehHhhhCHHHH-----------HHhhHHHhhhheeeeeccCccccceeec
Confidence            2111      11122233333 3468999999999976332           3444444331                  


Q ss_pred             --CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706          301 --KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  378 (438)
Q Consensus       301 --~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (438)
                        .+++|++|+....  +   ++++++||...+.|++|+.+++.++++.......           ..++++++..+++.
T Consensus       127 ~~~~~li~~t~~~~~--l---~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-----------~~~~~~al~~ia~~  190 (305)
T TIGR00635       127 LPPFTLVGATTRAGM--L---TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN-----------VEIEPEAALEIARR  190 (305)
T ss_pred             CCCeEEEEecCCccc--c---CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC-----------CCcCHHHHHHHHHH
Confidence              2566666655432  2   7789999988999999999999999998877532           34677888888876


Q ss_pred             HhhHhhhccccccchHHHHHHHHHHh
Q 013706          379 ETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       379 ~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      .       .|+.|.+.++++.+...+
T Consensus       191 ~-------~G~pR~~~~ll~~~~~~a  209 (305)
T TIGR00635       191 S-------RGTPRIANRLLRRVRDFA  209 (305)
T ss_pred             h-------CCCcchHHHHHHHHHHHH
Confidence            5       567788888888765443

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=1.8e-20  Score=160.39  Aligned_cols=130  Identities=21%  Similarity=0.219  Sum_probs=114.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCC--CCCCcccccccCCCChHHHHHHHcCC----HHHHHHHHHCCCCcccccC-CC
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWP--GNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKAN-NG   74 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~-~g   74 (438)
                      ..|.||||+||..|+.++++.|+...  ...+++++.+|..|+||||+|+..|+    .+++++|+++|+++|.++. .|
T Consensus        19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g   98 (169)
T PHA02741         19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEG   98 (169)
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCC
Confidence            47899999999999999999986421  12468899999999999999999998    5889999999999999985 89


Q ss_pred             CcHHHHHhhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706           75 MTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE  136 (438)
Q Consensus        75 ~t~L~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~  136 (438)
                      +||||+|+    ..++.+++++|+. .|++++..|.+|+||| +.|...+..+++++|...++
T Consensus        99 ~TpLh~A~----~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL-~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         99 DTALHLAA----HRRDHDLAEWLCCQPGIDLHFCNADNKSPF-ELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCHHHHHH----HcCCHHHHHHHHhCCCCCCCcCCCCCCCHH-HHHHHCCCHHHHHHHHHHHH
Confidence            99999999    8899999999997 5999999999999999 66666778889999886553

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.83  E-value=9.1e-20  Score=172.85  Aligned_cols=208  Identities=19%  Similarity=0.269  Sum_probs=141.5

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++..++.+..++.....           ...++.+++|+||||||||++|+++|++++.       .+...+
T Consensus        22 ~~~~~~vG~~~~~~~l~~~l~~~~~-----------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-------~~~~~~   83 (328)
T PRK00080         22 KSLDEFIGQEKVKENLKIFIEAAKK-----------RGEALDHVLLYGPPGLGKTTLANIIANEMGV-------NIRITS   83 (328)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHHHHh-----------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC-------CeEEEe
Confidence            4789999999999999877543311           1235679999999999999999999998864       343333


Q ss_pred             cccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------------------
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------  299 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------------  299 (438)
                      .+.+.      ....+...+... .++||||||||.+....+           ..|...|++                  
T Consensus        84 ~~~~~------~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~-----------e~l~~~~e~~~~~~~l~~~~~~~~~~~  146 (328)
T PRK00080         84 GPALE------KPGDLAAILTNLEEGDVLFIDEIHRLSPVVE-----------EILYPAMEDFRLDIMIGKGPAARSIRL  146 (328)
T ss_pred             ccccc------ChHHHHHHHHhcccCCEEEEecHhhcchHHH-----------HHHHHHHHhcceeeeeccCccccceee
Confidence            33211      122334444443 568999999999975332           223333332                  


Q ss_pred             --CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH
Q 013706          300 --GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  377 (438)
Q Consensus       300 --~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (438)
                        ..+++|++|+....  +   .++|++||...+.|++|+.+++.+|+++......           ..++++++..++.
T Consensus       147 ~l~~~~li~at~~~~~--l---~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-----------~~~~~~~~~~ia~  210 (328)
T PRK00080        147 DLPPFTLIGATTRAGL--L---TSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-----------VEIDEEGALEIAR  210 (328)
T ss_pred             cCCCceEEeecCCccc--C---CHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHHHHHHH
Confidence              12567777665432  2   7789999999999999999999999998887642           4467788888887


Q ss_pred             HHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          378 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       378 ~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      .+       .|+.|.+.++++++...+..+         ....|+.+++.++++.+
T Consensus       211 ~~-------~G~pR~a~~~l~~~~~~a~~~---------~~~~I~~~~v~~~l~~~  250 (328)
T PRK00080        211 RS-------RGTPRIANRLLRRVRDFAQVK---------GDGVITKEIADKALDML  250 (328)
T ss_pred             Hc-------CCCchHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHh
Confidence            66       567788888888766544211         11345555655555543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.83  E-value=2.3e-20  Score=165.11  Aligned_cols=132  Identities=18%  Similarity=0.196  Sum_probs=88.7

Q ss_pred             CCCcHHHHHHHcC--CHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHc---CCHHHHHHHHHCCCCcccccCCCCc
Q 013706            3 MAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGMT   76 (438)
Q Consensus         3 ~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t   76 (438)
                      .|.||||+|+..+  +.+++++|++    .|+++|.++ ..|+||||+|+..   ++.+++++|+++|+++|.+|..|.|
T Consensus        50 ~g~TpLh~a~~~~~~~~eiv~~Ll~----~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~T  125 (209)
T PHA02859         50 LYETPIFSCLEKDKVNVEILKFLIE----NGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKN  125 (209)
T ss_pred             cCCCHHHHHHHcCCCCHHHHHHHHH----CCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCC
Confidence            5677777777643  6777777777    567777765 3677777776653   3577777777777777777777777


Q ss_pred             HHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           77 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      |||+|+..  ..++.+++++|++.|++++.+|.+|.||+|.++...++.+++++|+..|++...
T Consensus       126 pLh~a~~~--~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~  187 (209)
T PHA02859        126 LLHMYMCN--FNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINE  187 (209)
T ss_pred             HHHHHHHh--ccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence            77776521  235677777777777777777777777774444445566777777766655443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.83  E-value=3.4e-20  Score=170.13  Aligned_cols=123  Identities=22%  Similarity=0.159  Sum_probs=112.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+..|+.+++++|++    .|++++..+  |+||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus        28 ~~G~TpLh~Aa~~g~~eiv~~Ll~----~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~A  101 (284)
T PHA02791         28 VHGHSALYYAIADNNVRLVCTLLN----AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYA  101 (284)
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----CcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            469999999999999999999999    677777764  68999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCC-ccccccccCCCchhHHHHHHhcc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~-t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      +    ..|+.+++++|+.+|++++..+..|+ ||| |.|+..++.+++++|+..+
T Consensus       102 a----~~g~~eivk~Ll~~gadin~~~~~g~~TpL-~~Aa~~g~~eivk~LL~~~  151 (284)
T PHA02791        102 V----DSGNMQTVKLFVKKNWRLMFYGKTGWKTSF-YHAVMLNDVSIVSYFLSEI  151 (284)
T ss_pred             H----HcCCHHHHHHHHHCCCCcCccCCCCCcHHH-HHHHHcCCHHHHHHHHhcC
Confidence            9    88999999999999999999999986 899 6666678889999998764

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.83  E-value=2.2e-19  Score=184.11  Aligned_cols=237  Identities=17%  Similarity=0.230  Sum_probs=163.4

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEEE
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE  236 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~~  236 (438)
                      +++.++|.+....++.+++.                .....++||+||||||||++|+.+|..+....   ......++.
T Consensus       184 ~~~~liGR~~ei~~~i~iL~----------------r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~  247 (758)
T PRK11034        184 GIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS  247 (758)
T ss_pred             CCCcCcCCCHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence            46788999987777776533                22467899999999999999999998763322   223345566


Q ss_pred             eeccccc--ccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706          237 VQRTDLV--GEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  311 (438)
Q Consensus       237 ~~~~~~~--~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~  311 (438)
                      ++...++  .+|.|+.+.+++.+|+..   .++||||||+|.+...+...+  ...++.+.|...+..+++.+|++||.+
T Consensus       248 l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~--g~~d~~nlLkp~L~~g~i~vIgATt~~  325 (758)
T PRK11034        248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG--GQVDAANLIKPLLSSGKIRVIGSTTYQ  325 (758)
T ss_pred             ccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC--cHHHHHHHHHHHHhCCCeEEEecCChH
Confidence            6655555  457888888888887653   568999999999987654221  123456778888889999999999999


Q ss_pred             hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccccc
Q 013706          312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  391 (438)
Q Consensus       312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~  391 (438)
                      .+...+..||+|.||| ..|.+++|+.+++.+|++....+...       .-...++++++........     ++.+.|
T Consensus       326 E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~-------~h~v~i~~~al~~a~~ls~-----ryi~~r  392 (758)
T PRK11034        326 EFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAV-----KYINDR  392 (758)
T ss_pred             HHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhh-------ccCCCcCHHHHHHHHHHhh-----ccccCc
Confidence            8887788899999999 58999999999999999987665432       1234566777765544221     112223


Q ss_pred             ----chHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706          392 ----LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  432 (438)
Q Consensus       392 ----~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~  432 (438)
                          ....+++.|....  |+...   ......|+.+|+.+.+..
T Consensus       393 ~lPdKaidlldea~a~~--~~~~~---~~~~~~v~~~~i~~v~~~  432 (758)
T PRK11034        393 HLPDKAIDVIDEAGARA--RLMPV---SKRKKTVNVADIESVVAR  432 (758)
T ss_pred             cChHHHHHHHHHHHHhh--ccCcc---cccccccChhhHHHHHHH
Confidence                4556777666443  22100   011234677777666544

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.82  E-value=3.5e-20  Score=174.23  Aligned_cols=203  Identities=17%  Similarity=0.231  Sum_probs=148.1

Q ss_pred             hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706          164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  243 (438)
Q Consensus       164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~  243 (438)
                      ++|.+...+.+.+.+..+              +....+|||+|++||||+++|++|+...    .....+|+.++|+.+.
T Consensus         1 liG~S~~m~~~~~~~~~~--------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s----~r~~~pfv~vnc~~~~   62 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRL--------------APLDRPVLIIGERGTGKELIAARLHYLS----KRWQGPLVKLNCAALS   62 (329)
T ss_pred             CCcCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCChHHHHHHHHHHhc----CccCCCeEEEeCCCCC
Confidence            356666666666655544              3467889999999999999999999844    3345699999998653


Q ss_pred             c-----cccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------
Q 013706          244 G-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------  300 (438)
Q Consensus       244 ~-----~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------  300 (438)
                      .     ..+|+...       .....|+.|.+|+||||||+.|....|           ..|+..++++           
T Consensus        63 ~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~~  131 (329)
T TIGR02974        63 ENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQ-----------EKLLRVIEYGEFERVGGSQTL  131 (329)
T ss_pred             hHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHH-----------HHHHHHHHcCcEEecCCCcee
Confidence            2     34554211       123458889999999999999987544           7888888653           


Q ss_pred             --CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706          301 --KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  373 (438)
Q Consensus       301 --~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~  373 (438)
                        ++.+|++++.+....+..  -.+.|..|| ...|.+|++.  .+++..++..++.+....   ++......++++++.
T Consensus       132 ~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~---~~~~~~~~ls~~a~~  208 (329)
T TIGR02974       132 QVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARE---LGLPLFPGFTPQARE  208 (329)
T ss_pred             ccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHH---hCCCCCCCcCHHHHH
Confidence              357888876654332211  135667788 5689999998  589999999998875431   122221468999999


Q ss_pred             HHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          374 ALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      .+..+.|      |||.|+|++++++++..+
T Consensus       209 ~L~~y~W------PGNvrEL~n~i~~~~~~~  233 (329)
T TIGR02974       209 QLLEYHW------PGNVRELKNVVERSVYRH  233 (329)
T ss_pred             HHHhCCC------CchHHHHHHHHHHHHHhC
Confidence            9999999      999999999999998765

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.82  E-value=9.4e-21  Score=181.58  Aligned_cols=131  Identities=32%  Similarity=0.418  Sum_probs=117.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.|||||||.+||+.+|.+|++    +|++++.+|.+|.||||+|++.||...+-+|+..|+|++.+|.+|+||||||+
T Consensus       111 l~stPLHWAar~G~~~vv~lLlq----hGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa  186 (600)
T KOG0509|consen  111 LGSTPLHWAARNGHISVVDLLLQ----HGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA  186 (600)
T ss_pred             CCCCcchHHHHcCcHHHHHHHHH----cCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH
Confidence            57899999999999999999999    79999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccC-CCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d-~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                          .+|....+..||..|+.+...| ..|.||||+++. .++..++.++++.+++.++.+
T Consensus       187 ----ykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~-~gN~~~v~Ll~~g~~~~d~~~  242 (600)
T KOG0509|consen  187 ----YKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVV-GGNLTAVKLLLEGGADLDKTN  242 (600)
T ss_pred             ----HhcccHHHHHHHHhcccccccccccCCchHHHHHh-cCCcceEehhhhcCCcccccc
Confidence                8888887999999999999988 899999955444 566666668888877665554

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.82  E-value=4e-19  Score=183.76  Aligned_cols=238  Identities=16%  Similarity=0.224  Sum_probs=168.8

Q ss_pred             hHHHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC
Q 013706          153 KMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT  231 (438)
Q Consensus       153 ~~~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~  231 (438)
                      .+......++. ..|++.+|++|.+++.....          ........++|+||||+|||++++.+|+.++.      
T Consensus       312 ~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~----------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~------  375 (784)
T PRK10787        312 DLRQAQEILDTDHYGLERVKDRILEYLAVQSR----------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGR------  375 (784)
T ss_pred             cHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh----------cccCCCceEEEECCCCCCHHHHHHHHHHHhCC------
Confidence            44555566765 89999999999988663321          01124457999999999999999999998865      


Q ss_pred             CCEEEeeccccc---------ccccccchHHHHHHHHHc--cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-
Q 013706          232 DRVTEVQRTDLV---------GEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-  299 (438)
Q Consensus       232 ~~~~~~~~~~~~---------~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-  299 (438)
                       +++.++.+...         ..|+|.....+...+..+  .+.|+||||+|++.+..+++       ..+.|++.+|. 
T Consensus       376 -~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~-------~~~aLlevld~~  447 (784)
T PRK10787        376 -KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGD-------PASALLEVLDPE  447 (784)
T ss_pred             -CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCC-------HHHHHHHHhccc
Confidence             66666544321         236777666776667665  35899999999999865532       23677777763 


Q ss_pred             ----------------CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhc-cccccccccc-
Q 013706          300 ----------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN-QTEDSLLYGF-  361 (438)
Q Consensus       300 ----------------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~-~~~~~~~~~~-  361 (438)
                                      +++++|+|++.-   .   .+|+|++|| .+|.|++|+.+|..+|+++++.. ..++   .++ 
T Consensus       448 ~~~~~~d~~~~~~~dls~v~~i~TaN~~---~---i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~---~~l~  517 (784)
T PRK10787        448 QNVAFSDHYLEVDYDLSDVMFVATSNSM---N---IPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIER---NALK  517 (784)
T ss_pred             cEEEEecccccccccCCceEEEEcCCCC---C---CCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHH---hCCC
Confidence                            567888765442   2   399999999 68999999999999999999963 2111   122 


Q ss_pred             cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          362 KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                      .....++++++..++.+|.     ....+|.++..+++.++....++..+.  ......|+.+++++.+.
T Consensus       518 ~~~l~i~~~ai~~ii~~yt-----~e~GaR~LeR~I~~i~r~~l~~~~~~~--~~~~v~v~~~~~~~~lg  580 (784)
T PRK10787        518 KGELTVDDSAIIGIIRYYT-----REAGVRSLEREISKLCRKAVKQLLLDK--SLKHIEINGDNLHDYLG  580 (784)
T ss_pred             CCeEEECHHHHHHHHHhCC-----cccCCcHHHHHHHHHHHHHHHHHHhcC--CCceeeecHHHHHHHhC
Confidence            2345688999999998664     244579999999999988877754221  11235688888887664

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.82  E-value=6.8e-20  Score=172.58  Aligned_cols=207  Identities=17%  Similarity=0.210  Sum_probs=153.4

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .+++++|.+...+.+.+.+..+              +....+|+|+|++||||+++|++|+..    +.....+|+.++|
T Consensus         4 ~~~~liG~S~~~~~~~~~i~~~--------------a~~~~pVlI~GE~GtGK~~lA~~iH~~----s~r~~~pfv~v~c   65 (326)
T PRK11608          4 YKDNLLGEANSFLEVLEQVSRL--------------APLDKPVLIIGERGTGKELIASRLHYL----SSRWQGPFISLNC   65 (326)
T ss_pred             ccCccEECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHh----CCccCCCeEEEeC
Confidence            4678899998888888776655              346789999999999999999999973    3334569999999


Q ss_pred             cccc-----ccccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706          240 TDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  300 (438)
Q Consensus       240 ~~~~-----~~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  300 (438)
                      ..+.     ..++|+...       .....|+.+.+|+|||||++.|.+..|           ..|+..++++       
T Consensus        66 ~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~~~~~g~  134 (326)
T PRK11608         66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQ-----------EKLLRVIEYGELERVGG  134 (326)
T ss_pred             CCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHH-----------HHHHHHHhcCcEEeCCC
Confidence            8753     335554321       123457889999999999999987544           7888887653       


Q ss_pred             ------CEEEEEecCChhHHHHh--hhCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccH
Q 013706          301 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM  369 (438)
Q Consensus       301 ------~v~vi~~~~~~~~~~~~--~~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~  369 (438)
                            ++.+|++++.+....+.  ...+.|..|| ...|.+|++..  +|+..++..++.+....   ++......++.
T Consensus       135 ~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~---~~~~~~~~~s~  211 (326)
T PRK11608        135 SQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRE---LGLPLFPGFTE  211 (326)
T ss_pred             CceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHH---hCCCCCCCCCH
Confidence                  36777776655432221  0135667788 66899999985  78999999998775421   22222246899


Q ss_pred             HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +++..+..+.|      |||.++|++++++++..+
T Consensus       212 ~al~~L~~y~W------PGNvrEL~~vl~~a~~~~  240 (326)
T PRK11608        212 RARETLLNYRW------PGNIRELKNVVERSVYRH  240 (326)
T ss_pred             HHHHHHHhCCC------CcHHHHHHHHHHHHHHhc
Confidence            99999999999      999999999999998753

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.81  E-value=6.6e-19  Score=184.21  Aligned_cols=193  Identities=19%  Similarity=0.191  Sum_probs=144.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEE
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~  235 (438)
                      ..++.++|++....++.+++.                .+...+++|+||||||||++|+.+|+.+....   .+....++
T Consensus       184 ~~ld~~iGr~~ei~~~i~~l~----------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~  247 (852)
T TIGR03345       184 GKIDPVLGRDDEIRQMIDILL----------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL  247 (852)
T ss_pred             CCCCcccCCHHHHHHHHHHHh----------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence            457889999987555554421                23556899999999999999999999885322   22334567


Q ss_pred             Eeeccccc--ccccccchHHHHHHHHHcc----CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706          236 EVQRTDLV--GEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~----~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      .++.+.+.  ..+.|+.+..++.+|+++.    +.||||||+|.+...+.+.+.   ..+-+.|+..++.|.+.+|+|||
T Consensus       248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~n~Lkp~l~~G~l~~IgaTT  324 (852)
T TIGR03345       248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ---GDAANLLKPALARGELRTIAATT  324 (852)
T ss_pred             EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc---ccHHHHhhHHhhCCCeEEEEecC
Confidence            77777665  3688999999999998763    479999999999876542211   12347788999999999999999


Q ss_pred             ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706          310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  378 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (438)
                      .+.+...+..||+|+||| ..|.+++|+.++..+|++........       .....++++++..+...
T Consensus       325 ~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~-------~~~v~i~d~al~~~~~l  385 (852)
T TIGR03345       325 WAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEK-------HHGVLILDEAVVAAVEL  385 (852)
T ss_pred             HHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhh-------cCCCeeCHHHHHHHHHH
Confidence            988877777899999999 68999999999999998665544321       11244567777766553

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=99.81  E-value=2.9e-19  Score=157.82  Aligned_cols=191  Identities=19%  Similarity=0.219  Sum_probs=137.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|+++.|++.+.+.+...+..                ...+++|||||||||||+.|+++|++++.+... ...+.+.+
T Consensus        33 kt~de~~gQe~vV~~L~~a~~~----------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~-~~rvl~ln   95 (346)
T KOG0989|consen   33 KTFDELAGQEHVVQVLKNALLR----------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLF-PCRVLELN   95 (346)
T ss_pred             CcHHhhcchHHHHHHHHHHHhh----------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCcccc-ccchhhhc
Confidence            4689999999999988876432                245799999999999999999999999753322 22345566


Q ss_pred             cccccccccccchH-HHHHHHHHc---------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEE
Q 013706          239 RTDLVGEFVGHTGP-KTRRRIKEA---------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF  306 (438)
Q Consensus       239 ~~~~~~~~~g~~~~-~~~~~~~~a---------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~  306 (438)
                      .++..+.-++.... ...+.....         ...|++|||.|.|....|           ++|.+.||+  ..+++|+
T Consensus        96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq-----------~aLrr~mE~~s~~trFiL  164 (346)
T KOG0989|consen   96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQ-----------AALRRTMEDFSRTTRFIL  164 (346)
T ss_pred             ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHH-----------HHHHHHHhccccceEEEE
Confidence            66655554433211 111111111         117999999999987544           899999987  3444444


Q ss_pred             -ecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          307 -AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       307 -~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                       +++...   +   .+++.+|+ .++.|+++..+.+...|+....++.           .+++++++..++...      
T Consensus       165 Icnylsr---i---i~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~-----------v~~d~~al~~I~~~S------  220 (346)
T KOG0989|consen  165 ICNYLSR---I---IRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEG-----------VDIDDDALKLIAKIS------  220 (346)
T ss_pred             EcCChhh---C---ChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHc------
Confidence             444433   3   67788998 8999999999999999999988764           456788888888865      


Q ss_pred             ccccccchHHHHHHHHH
Q 013706          386 REMNGGLVDPMLVNARE  402 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~  402 (438)
                       .|+.|....+++.+..
T Consensus       221 -~GdLR~Ait~Lqsls~  236 (346)
T KOG0989|consen  221 -DGDLRRAITTLQSLSL  236 (346)
T ss_pred             -CCcHHHHHHHHHHhhc
Confidence             6777778888887766

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.2e-19  Score=154.60  Aligned_cols=131  Identities=20%  Similarity=0.208  Sum_probs=113.4

Q ss_pred             CCCCcHHHHHHHcCCH----HHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHH---HHHHHHCCCCccccc-CC
Q 013706            2 QMAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA---AKLLLAHGAFIEAKA-NN   73 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~-~~   73 (438)
                      ..+.++||.||..|+.    +++++|++    .+..++.+|..|+||||+|+..|+.+.   +++|++.|+++|.++ ..
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~----~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~   93 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISG----DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGT   93 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhh----cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCC
Confidence            3578899999999998    55556666    688899999999999999999988654   899999999999998 58


Q ss_pred             CCcHHHHHhhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           74 GMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        74 g~t~L~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      |.||||+|+    ..++.+++++|+. .|++++.+|..|+||| +.+...+..+++++|+.++++...+
T Consensus        94 g~TpLh~A~----~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL-~~A~~~~~~~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743         94 GNTLLHIAA----STKNYELAEWLCRQLGVNLGAINYQHETAY-HIAYKMRDRRMMEILRANGAVCDDP  157 (166)
T ss_pred             CCcHHHHHH----HhCCHHHHHHHHhccCCCccCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            999999999    7899999999995 7999999999999999 5555667888999999888765443

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.81  E-value=8.6e-20  Score=184.16  Aligned_cols=205  Identities=19%  Similarity=0.234  Sum_probs=153.6

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .++.++|.+...+++.+.+..+              +....+|||+||+|||||++|++|+...    .....+|+.++|
T Consensus       194 ~~~~liG~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s----~r~~~pfv~i~c  255 (534)
T TIGR01817       194 KEDGIIGKSPAMRQVVDQARVV--------------ARSNSTVLLRGESGTGKELIAKAIHYLS----PRAKRPFVKVNC  255 (534)
T ss_pred             ccCceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCccHHHHHHHHHHhC----CCCCCCeEEeec
Confidence            4678999999888888776654              3467789999999999999999999844    334569999999


Q ss_pred             ccccc-----cccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706          240 TDLVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  300 (438)
Q Consensus       240 ~~~~~-----~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  300 (438)
                      +.+..     ..+|+...       .....|+.+.+|+||||||+.|.+..|           ..|+..++++       
T Consensus       256 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q-----------~~Ll~~l~~~~~~~~~~  324 (534)
T TIGR01817       256 AALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQ-----------AKLLRVLQEGEFERVGG  324 (534)
T ss_pred             CCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHH-----------HHHHHHHhcCcEEECCC
Confidence            86532     34454321       112347788899999999999987555           8888888653       


Q ss_pred             ------CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccccccccH
Q 013706          301 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  369 (438)
Q Consensus       301 ------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~  369 (438)
                            ++.+|++++.+....+..  -.+.|..|+ ...|.+|++.  .+++..++..++.+...     .+.....+++
T Consensus       325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~-----~~~~~~~~s~  399 (534)
T TIGR01817       325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNR-----ENGRPLTITP  399 (534)
T ss_pred             CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHH-----HcCCCCCCCH
Confidence                  367888877665443310  124455577 4578899998  68999999999987643     1222357899


Q ss_pred             HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +++..+..+.|      |||.|+|++++++++...
T Consensus       400 ~a~~~L~~~~W------PGNvrEL~~v~~~a~~~~  428 (534)
T TIGR01817       400 SAIRVLMSCKW------PGNVRELENCLERTATLS  428 (534)
T ss_pred             HHHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence            99999999999      999999999999998654

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.80  E-value=8.1e-19  Score=168.73  Aligned_cols=189  Identities=15%  Similarity=0.164  Sum_probs=136.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  231 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-------  231 (438)
                      ..|++++|++.+...|...+..               ...+..+||+||||||||++|+.+|+.++.......       
T Consensus        15 ~~f~dvVGQe~iv~~L~~~i~~---------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~   79 (484)
T PRK14956         15 QFFRDVIHQDLAIGALQNALKS---------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT   79 (484)
T ss_pred             CCHHHHhChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence            4799999999999988876431               112334899999999999999999998864321111       


Q ss_pred             ----------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          232 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       232 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                ..+++++++.-      .....++.+.+.+       +..|+||||+|.|..           .+.+.||
T Consensus        80 sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NALL  142 (484)
T PRK14956         80 SCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNALL  142 (484)
T ss_pred             HHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHHH
Confidence                      12333333210      1122334433322       336999999999976           4569999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..|++  ..+++|++|+..  ..+   .|++++|+ ..+.|.+++.+++.+.+++.+.++.           ..++++++
T Consensus       143 KtLEEPp~~viFILaTte~--~kI---~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Eg-----------i~~e~eAL  205 (484)
T PRK14956        143 KTLEEPPAHIVFILATTEF--HKI---PETILSRC-QDFIFKKVPLSVLQDYSEKLCKIEN-----------VQYDQEGL  205 (484)
T ss_pred             HHhhcCCCceEEEeecCCh--hhc---cHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99998  778888887652  333   78899998 8899999999999999999887642           34677888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++...       .|+.|+..+++++++..
T Consensus       206 ~~Ia~~S-------~Gd~RdAL~lLeq~i~~  229 (484)
T PRK14956        206 FWIAKKG-------DGSVRDMLSFMEQAIVF  229 (484)
T ss_pred             HHHHHHc-------CChHHHHHHHHHHHHHh
Confidence            8888765       68889999999987643

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.5e-18  Score=153.74  Aligned_cols=241  Identities=17%  Similarity=0.307  Sum_probs=163.3

Q ss_pred             hhHHHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhcC-C-CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          152 AKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALG-L-KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       152 ~~~~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      ....+....+++ ++|++..|+.+.=.+   -..++|-... . ..-.....|+||.||+|+|||.+|+.+|+.++.   
T Consensus        50 PtP~eik~~Ld~YVIGQe~AKKvLsVAV---YNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV---  123 (408)
T COG1219          50 PTPKEIKAHLDEYVIGQEQAKKVLSVAV---YNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV---  123 (408)
T ss_pred             CChHHHHHHhhhheecchhhhceeeeee---hhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCC---
Confidence            445566666665 689999988765321   1111111111 1 111124679999999999999999999999988   


Q ss_pred             cCCCCEEEeecccccc-cccccchHH-HHHHH-------HHccCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhh
Q 013706          229 LPTDRVTEVQRTDLVG-EFVGHTGPK-TRRRI-------KEAEGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSV  296 (438)
Q Consensus       229 ~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~-------~~a~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~  296 (438)
                          ||-..++..+.. .|+|+--.+ +-+++       +.|+.||+||||||+++.+..+.+   +-.+..+..+||..
T Consensus       124 ----PFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKi  199 (408)
T COG1219         124 ----PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKI  199 (408)
T ss_pred             ----CeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHH
Confidence                888888887754 489984444 34444       445679999999999998765332   23456788999999


Q ss_pred             ccC-----------------------CCEEEEEecCChhHHHHhhhC---------------------------------
Q 013706          297 MDG-----------------------GKVVVIFAGYSEPMKRVIASN---------------------------------  320 (438)
Q Consensus       297 ~~~-----------------------~~v~vi~~~~~~~~~~~~~~~---------------------------------  320 (438)
                      +++                       .++.+|+.+--..++.++...                                 
T Consensus       200 iEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDL  279 (408)
T COG1219         200 IEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDL  279 (408)
T ss_pred             HcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHH
Confidence            986                       146777766444444333221                                 


Q ss_pred             ------cCccCCCCcceeCCCCCHHHHHHHHH---HHHhccccccccccc-cccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          321 ------EGFCRRVTKFFHFNDFNSEELAKILH---IKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       321 ------p~l~~R~~~~i~~~~~~~~e~~~il~---~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                            |.+..|++.+-.+..++.+++..||.   +.+-++...  .+++ .+...++++++.++++...    .+...+
T Consensus       280 vkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~--Lf~~d~V~L~F~~~AL~~IA~~A~----~rkTGA  353 (408)
T COG1219         280 VKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQK--LFEMDGVELEFTEEALKAIAKKAI----ERKTGA  353 (408)
T ss_pred             HHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHH--HhcccCceEEEcHHHHHHHHHHHH----Hhccch
Confidence                  88999999999999999999999983   222222111  1122 3445678899999988764    345668


Q ss_pred             cchHHHHHHHHHHhhccc
Q 013706          391 GLVDPMLVNARENLDLRL  408 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~  408 (438)
                      |.||.++|.........+
T Consensus       354 RGLRsI~E~~lld~Mfel  371 (408)
T COG1219         354 RGLRSIIEELLLDVMFEL  371 (408)
T ss_pred             hHHHHHHHHHHHHHHhhC
Confidence            999999998887754333

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.80  E-value=2.7e-18  Score=163.76  Aligned_cols=258  Identities=16%  Similarity=0.219  Sum_probs=164.8

Q ss_pred             hHHHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhc---CCC-C-CCCCCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          153 KMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKAL---GLK-V-GARRPPHMAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       153 ~~~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~-~-~~~~~~~~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      ...++...+++ ++|++.+++.+...+...   .++...   ... . ......++||+||||||||++|+++|+.++. 
T Consensus        67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h---~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~-  142 (413)
T TIGR00382        67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNH---YKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV-  142 (413)
T ss_pred             CHHHHHHHhcceecCHHHHHHHHHHHHHHH---HhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC-
Confidence            45667777765 589999999887543211   111111   000 0 0123568999999999999999999988764 


Q ss_pred             CCcCCCCEEEeeccccc-ccccccc-hHHHHHHH-------HHccCcEEEEeCcccccCCCCCCC---chhHHHHHHHHH
Q 013706          227 GILPTDRVTEVQRTDLV-GEFVGHT-GPKTRRRI-------KEAEGGILFVDEAYRLIPMQKADD---KDYGIEALEEIM  294 (438)
Q Consensus       227 ~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~-------~~a~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll  294 (438)
                            +|..++++.+. ..|+|+. +..+...+       +.+.++||||||+|++.+++.+.+   ...+..+++.||
T Consensus       143 ------pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL  216 (413)
T TIGR00382       143 ------PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALL  216 (413)
T ss_pred             ------CeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHH
Confidence                  77778877654 3588874 33344433       456779999999999998644221   122346888899


Q ss_pred             hhccCC---------------CEEEEEecCC--------hhH---------------------------H--------HH
Q 013706          295 SVMDGG---------------KVVVIFAGYS--------EPM---------------------------K--------RV  316 (438)
Q Consensus       295 ~~~~~~---------------~v~vi~~~~~--------~~~---------------------------~--------~~  316 (438)
                      +.|++.               ..++|.|++-        ...                           .        .+
T Consensus       217 ~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl  296 (413)
T TIGR00382       217 KIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDL  296 (413)
T ss_pred             HHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHH
Confidence            988641               1234444332        000                           0        00


Q ss_pred             hh--hCcCccCCCCcceeCCCCCHHHHHHHHHHH----HhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          317 IA--SNEGFCRRVTKFFHFNDFNSEELAKILHIK----MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       317 ~~--~~p~l~~R~~~~i~~~~~~~~e~~~il~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      ..  ..|+|..|++.++.|.+++.+++.+|+...    +++..+.....  .+...++++++..+++..+    .....+
T Consensus       297 ~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~--gi~L~~t~~a~~~Ia~~~~----~~~~GA  370 (413)
T TIGR00382       297 VKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMD--NVELDFEEEALKAIAKKAL----ERKTGA  370 (413)
T ss_pred             HHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccC--CeEEEECHHHHHHHHHhCC----CCCCCc
Confidence            00  239999999999999999999999999764    33222111111  4456678999999998754    124557


Q ss_pred             cchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHH
Q 013706          391 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA  428 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~  428 (438)
                      |.|+.++++........+....  ......|+.+.+.+
T Consensus       371 R~Lr~iie~~l~~~m~e~p~~~--~~~~v~i~~~~v~~  406 (413)
T TIGR00382       371 RGLRSIVEGLLLDVMFDLPSLE--DLEKVVITKETVLK  406 (413)
T ss_pred             hHHHHHHHHhhHHHHhhCCCCC--CCcEEEECHHHHcC
Confidence            9999999999988765554321  12224566666543

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.80  E-value=1.4e-19  Score=148.55  Aligned_cols=121  Identities=27%  Similarity=0.517  Sum_probs=103.2

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc---c-CcEEEEeCcccccCC
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPM  277 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~-~~il~iDEid~l~~~  277 (438)
                      +||+||||||||++|+.+|+.++.       +++.+++.++.+.+.+++...+.+.|.++   . ++||||||+|.+.+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~-------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~   73 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGF-------PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPK   73 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTS-------EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhccc-------ccccccccccccccccccccccccccccccccccceeeeeccchhcccc
Confidence            689999999999999999998865       89999999999999999999999999886   3 699999999999987


Q ss_pred             CCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCChhHHHHhhhCcCcc-CCCCcceeCC
Q 013706          278 QKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNEGFC-RRVTKFFHFN  334 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~~~~~~~~~~~p~l~-~R~~~~i~~~  334 (438)
                      .+...+.....+++.|+..+++     .++++|++++.  .+.+   +|+++ +||+..|++|
T Consensus        74 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~--~~~i---~~~l~~~rf~~~i~~~  131 (132)
T PF00004_consen   74 SQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS--PDKI---DPALLRSRFDRRIEFP  131 (132)
T ss_dssp             CSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS--GGGS---CHHHHSTTSEEEEEE-
T ss_pred             cccccccccccccceeeecccccccccccceeEEeeCC--hhhC---CHhHHhCCCcEEEEcC
Confidence            7545667777888999999976     34888888766  3333   89999 9999999886

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.80  E-value=3.6e-19  Score=175.15  Aligned_cols=127  Identities=26%  Similarity=0.295  Sum_probs=76.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccc-ccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      .|.||||.|+..|+.++|++|++    .+..+ +..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus        67 ~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A  142 (413)
T PHA02875         67 DIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLA  142 (413)
T ss_pred             CcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence            45666666666666666666665    23322 23344566666666666666666666666666666666666666666


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ  138 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~  138 (438)
                      +    ..|+.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..|++.
T Consensus       143 ~----~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL-~~A~~~g~~eiv~~Ll~~ga~~  194 (413)
T PHA02875        143 V----MMGDIKGIELLIDHKACLDIEDCCGCTPL-IIAMAKGDIAICKMLLDSGANI  194 (413)
T ss_pred             H----HcCCHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCCCC
Confidence            6    55666666666666666666666666666 3344445556666666655543

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.79  E-value=2e-18  Score=172.08  Aligned_cols=189  Identities=15%  Similarity=0.194  Sum_probs=136.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCC-----
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTD-----  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~-----  232 (438)
                      +.|++++|++.+++.|..++.                .....| +||+||+|||||++|+++++.++........     
T Consensus        13 qtFdEVIGQe~Vv~~L~~aL~----------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C   76 (830)
T PRK07003         13 KDFASLVGQEHVVRALTHALD----------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC   76 (830)
T ss_pred             CcHHHHcCcHHHHHHHHHHHh----------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence            479999999999999988743                123334 6999999999999999999998642211111     


Q ss_pred             ------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706          233 ------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI  293 (438)
Q Consensus       233 ------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l  293 (438)
                                  .+++++.++      ......++.+++.+       +..|+||||+|.|..           ...|.|
T Consensus        77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NAL  139 (830)
T PRK07003         77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAM  139 (830)
T ss_pred             HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHH
Confidence                        133333321      11223455565543       347999999999975           345999


Q ss_pred             HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706          294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  371 (438)
Q Consensus       294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  371 (438)
                      |+.|++  ..+.||++|+...  .+   .+.+++|+ .+|.|..++.+++.++|++.+.++.           ..++.++
T Consensus       140 LKtLEEPP~~v~FILaTtd~~--KI---p~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg-----------I~id~eA  202 (830)
T PRK07003        140 LKTLEEPPPHVKFILATTDPQ--KI---PVTVLSRC-LQFNLKQMPAGHIVSHLERILGEER-----------IAFEPQA  202 (830)
T ss_pred             HHHHHhcCCCeEEEEEECChh--hc---cchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence            999987  4677777655432  33   68899999 9999999999999999999988753           3457788


Q ss_pred             HHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          372 IAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +..+.+..       .|+.|+..++++++....
T Consensus       203 L~lIA~~A-------~GsmRdALsLLdQAia~~  228 (830)
T PRK07003        203 LRLLARAA-------QGSMRDALSLTDQAIAYS  228 (830)
T ss_pred             HHHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence            88887765       678899999988887543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.79  E-value=1.4e-19  Score=166.77  Aligned_cols=126  Identities=31%  Similarity=0.383  Sum_probs=116.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|-+||-.|+..||+++|+.|++    .|+++|....-+.|||--||.-||.+++++|+++|+|++..|..|.|.||+||
T Consensus        83 egappLWaAsaAGHl~vVk~L~~----~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~  158 (615)
T KOG0508|consen   83 EGAPPLWAASAAGHLEVVKLLLR----RGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC  158 (615)
T ss_pred             CCCchhhHHhccCcHHHHHHHHH----hcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee
Confidence            57789999999999999999999    67999998888899999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                          .+|+.+++++|++.|+|+|.++..|+|+| |.|...++.+++++|+++++.
T Consensus       159 ----ykGh~~I~qyLle~gADvn~ks~kGNTAL-H~caEsG~vdivq~Ll~~ga~  208 (615)
T KOG0508|consen  159 ----YKGHVDIAQYLLEQGADVNAKSYKGNTAL-HDCAESGSVDIVQLLLKHGAK  208 (615)
T ss_pred             ----ccCchHHHHHHHHhCCCcchhcccCchHH-HhhhhcccHHHHHHHHhCCce
Confidence                89999999999999999999999999999 666667889999999987654

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.79  E-value=1.3e-18  Score=170.21  Aligned_cols=189  Identities=20%  Similarity=0.219  Sum_probs=133.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  231 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-------  231 (438)
                      ..|++++|++.+++.|...+..               ...+..+||+||||||||++|+++|+.+........       
T Consensus        11 ~~~~divGq~~i~~~L~~~i~~---------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~   75 (472)
T PRK14962         11 KTFSEVVGQDHVKKLIINALKK---------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR   75 (472)
T ss_pred             CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence            4689999999998888775331               123445899999999999999999998864221111       


Q ss_pred             ----------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          232 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       232 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                ..+++++++.-      .....++++.+.+       ...||||||+|.+..           ..++.|+
T Consensus        76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~LL  138 (472)
T PRK14962         76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNALL  138 (472)
T ss_pred             HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHHH
Confidence                      12444444321      1122344443332       347999999999964           3458899


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..+++  +.+++|++++...  .+   ++++++|+ ..+.|.+++.+++..+++..+....           ..++++++
T Consensus       139 k~LE~p~~~vv~Ilattn~~--kl---~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~eg-----------i~i~~eal  201 (472)
T PRK14962        139 KTLEEPPSHVVFVLATTNLE--KV---PPTIISRC-QVIEFRNISDELIIKRLQEVAEAEG-----------IEIDREAL  201 (472)
T ss_pred             HHHHhCCCcEEEEEEeCChH--hh---hHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  6677777665322  33   78899998 7999999999999999998887542           34677888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++...       .|+.|.+.+.++.+...
T Consensus       202 ~~Ia~~s-------~GdlR~aln~Le~l~~~  225 (472)
T PRK14962        202 SFIAKRA-------SGGLRDALTMLEQVWKF  225 (472)
T ss_pred             HHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence            8888865       57788888888876654

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.79  E-value=3.1e-18  Score=175.81  Aligned_cols=219  Identities=18%  Similarity=0.257  Sum_probs=154.0

Q ss_pred             HHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCE
Q 013706          156 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  234 (438)
Q Consensus       156 ~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~  234 (438)
                      .+...+. .++|++.+++.+.+.+....       .+.....++..++||+||||||||.+|+++|+.++.       ++
T Consensus       451 ~l~~~L~~~ViGQ~~ai~~l~~~i~~~~-------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-------~~  516 (758)
T PRK11034        451 NLGDRLKMLVFGQDKAIEALTEAIKMSR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------EL  516 (758)
T ss_pred             HHHHHhcceEeCcHHHHHHHHHHHHHHh-------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-------Cc
Confidence            3444443 47899999998888765432       222222234457999999999999999999998854       67


Q ss_pred             EEeeccccc-----cccc-------ccc-hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-
Q 013706          235 TEVQRTDLV-----GEFV-------GHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-  300 (438)
Q Consensus       235 ~~~~~~~~~-----~~~~-------g~~-~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-  300 (438)
                      +.++++++.     ..++       |.. ...+...+.....+||||||||++.+           ++.+.|++.||++ 
T Consensus       517 i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-----------~v~~~LLq~ld~G~  585 (758)
T PRK11034        517 LRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNLLLQVMDNGT  585 (758)
T ss_pred             EEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-----------HHHHHHHHHHhcCe
Confidence            777766542     2233       321 23455566666779999999999986           5669999999853 


Q ss_pred             ------------CEEEEEecCChhH-------------------HHH-hhhCcCccCCCCcceeCCCCCHHHHHHHHHHH
Q 013706          301 ------------KVVVIFAGYSEPM-------------------KRV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIK  348 (438)
Q Consensus       301 ------------~v~vi~~~~~~~~-------------------~~~-~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~  348 (438)
                                  +.++|++++...-                   ..+ -.-.|+|+.|+|.+|.|++++.+++.+|+..+
T Consensus       586 ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~  665 (758)
T PRK11034        586 LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF  665 (758)
T ss_pred             eecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHH
Confidence                        3467777762210                   000 01248999999999999999999999999999


Q ss_pred             HhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706          349 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      +.+..++....+  +...++++++..++...+  +  ....+|.++.++++-.....
T Consensus       666 l~~~~~~l~~~~--i~l~~~~~~~~~l~~~~~--~--~~~GAR~l~r~i~~~l~~~l  716 (758)
T PRK11034        666 IVELQAQLDQKG--VSLEVSQEARDWLAEKGY--D--RAMGARPMARVIQDNLKKPL  716 (758)
T ss_pred             HHHHHHHHHHCC--CCceECHHHHHHHHHhCC--C--CCCCCchHHHHHHHHHHHHH
Confidence            988766543334  456678999999987544  1  13457999999988877654

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.79  E-value=5.2e-19  Score=174.79  Aligned_cols=206  Identities=16%  Similarity=0.161  Sum_probs=148.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH--c--CCcCCCCEE
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM--V--GILPTDRVT  235 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~--~--~~~~~~~~~  235 (438)
                      .|++++|.+...+++.+.+..+              +....+|||+|+|||||+++|++|+..+..  .  +.....+|+
T Consensus       217 ~f~~iiG~S~~m~~~~~~i~~~--------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv  282 (538)
T PRK15424        217 VLGDLLGQSPQMEQVRQTILLY--------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFV  282 (538)
T ss_pred             chhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeE
Confidence            5788999999888888776544              346789999999999999999999986210  0  334567999


Q ss_pred             Eeeccccc-----ccccccchH--------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-
Q 013706          236 EVQRTDLV-----GEFVGHTGP--------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-  301 (438)
Q Consensus       236 ~~~~~~~~-----~~~~g~~~~--------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-  301 (438)
                      .++|+.+.     +..+|+...        .....|+.|.+|+||||||+.|.+..|           ..|+..++++. 
T Consensus       283 ~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q-----------~kLl~~L~e~~~  351 (538)
T PRK15424        283 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ-----------TRLLRVLEEKEV  351 (538)
T ss_pred             EeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHH-----------HHHHhhhhcCeE
Confidence            99998653     345665321        123578899999999999999988555           88888887642 


Q ss_pred             ------------EEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhcccccccccccccc
Q 013706          302 ------------VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLH  364 (438)
Q Consensus       302 ------------v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~  364 (438)
                                  +.+|++|+.+....+-.  -.+.|..|+ ...|++|++..  +|+..++..++.+...     ++  .
T Consensus       352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~-----~~--~  424 (538)
T PRK15424        352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLA-----AL--S  424 (538)
T ss_pred             EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHH-----Hc--C
Confidence                        47888877665432210  013344466 56778888874  7899999999987432     11  1


Q ss_pred             ccccHHH-------HHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          365 SSCSMDA-------IAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       365 ~~~~~~~-------~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++.++       +..+..+.|      |||.|+|+|++++++..
T Consensus       425 ~~~~~~a~~~~~~a~~~L~~y~W------PGNvREL~nvier~~i~  464 (538)
T PRK15424        425 APFSAALRQGLQQCETLLLHYDW------PGNVRELRNLMERLALF  464 (538)
T ss_pred             CCCCHHHHHhhHHHHHHHHhCCC------CchHHHHHHHHHHHHHh
Confidence            1234444       477888889      99999999999998764

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.79  E-value=7.5e-19  Score=175.82  Aligned_cols=128  Identities=31%  Similarity=0.385  Sum_probs=115.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW   83 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   83 (438)
                      |+||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~----~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~  243 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLS----YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVG  243 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999999    789999999999999999999999999999999999999999999999999982


Q ss_pred             cccccCcHHHHHHHHhCCCCCcccCC-CCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           84 YSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        84 ~~~~~~~~~~~~~Ll~~ga~~~~~d~-~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                         ..++.+++++|+++|++++..+. .|.||| |.|.  +..+++++|+..|++....
T Consensus       244 ---~~~~~~iv~~Ll~~gadvn~~~~~~g~TpL-h~A~--~~~~~v~~Ll~~gadin~~  296 (477)
T PHA02878        244 ---YCKDYDILKLLLEHGVDVNAKSYILGLTAL-HSSI--KSERKLKLLLEYGADINSL  296 (477)
T ss_pred             ---hcCCHHHHHHHHHcCCCCCccCCCCCCCHH-HHHc--cCHHHHHHHHHCCCCCCCc
Confidence               23689999999999999999886 799999 5553  4678899999988875544

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.78  E-value=7.7e-19  Score=173.83  Aligned_cols=204  Identities=17%  Similarity=0.161  Sum_probs=152.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|.+...+.+.+.+..+              +....+|||+|++||||+++|++|+...    .....+|+.++
T Consensus       209 ~~f~~iiG~S~~m~~~~~~i~~~--------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S----~r~~~pfv~in  270 (526)
T TIGR02329       209 YRLDDLLGASAPMEQVRALVRLY--------------ARSDATVLILGESGTGKELVAQAIHQLS----GRRDFPFVAIN  270 (526)
T ss_pred             cchhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCcCHHHHHHHHHHhc----CcCCCCEEEec
Confidence            45788999999888888776544              3467899999999999999999999843    34567999999


Q ss_pred             ccccc-----ccccccchH--------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC----
Q 013706          239 RTDLV-----GEFVGHTGP--------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----  301 (438)
Q Consensus       239 ~~~~~-----~~~~g~~~~--------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----  301 (438)
                      |..+.     +.++|+.+.        .....|+.|.+|+||||||+.|.+..|           ..|+..++++.    
T Consensus       271 C~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q-----------~~Ll~~L~~~~~~r~  339 (526)
T TIGR02329       271 CGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQ-----------TRLLRVLEEREVVRV  339 (526)
T ss_pred             cccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHH-----------HHHHHHHhcCcEEec
Confidence            98653     345665321        134578899999999999999987555           88888887643    


Q ss_pred             ---------EEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccc
Q 013706          302 ---------VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSC  367 (438)
Q Consensus       302 ---------v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~  367 (438)
                               +.+|++++.+....+-.  -.+.|..|+ ...|.+|++..  +++..++..++.+...     .+  ...+
T Consensus       340 g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~-----~~--~~~~  412 (526)
T TIGR02329       340 GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAA-----AL--RLPD  412 (526)
T ss_pred             CCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHH-----Hc--CCCC
Confidence                     36777776665433210  023444577 57888999875  8999999999987642     11  2236


Q ss_pred             cHHHHHH-------HHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          368 SMDAIAA-------LIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       368 ~~~~~~~-------~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +++++..       +..+.|      |||.|+|++++++++...
T Consensus       413 ~~~a~~~~~~~~~~L~~y~W------PGNvrEL~nvier~~i~~  450 (526)
T TIGR02329       413 SEAAAQVLAGVADPLQRYPW------PGNVRELRNLVERLALEL  450 (526)
T ss_pred             CHHHHHHhHHHHHHHHhCCC------CchHHHHHHHHHHHHHhc
Confidence            7778777       999999      999999999999988653

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=8.6e-19  Score=140.86  Aligned_cols=121  Identities=33%  Similarity=0.355  Sum_probs=108.9

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706            6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS   85 (438)
Q Consensus         6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   85 (438)
                      --+.+|+..+.+..|+.||+.   ..-.+|.+|.+|.||||-|+.+||.++++.|+.+|++.+++...||||||.||   
T Consensus        65 rl~lwaae~nrl~eV~~lL~e---~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAc---  138 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSE---KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSAC---  138 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHh---ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhh---
Confidence            457899999999999999984   45569999999999999999999999999999999999999999999999999   


Q ss_pred             cccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706           86 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW  133 (438)
Q Consensus        86 ~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~  133 (438)
                       .-.+.+++..||++|+|++......+||||.++...+....+.+|+.
T Consensus       139 -kWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  139 -KWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             -cccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence             66789999999999999999999999999666666666667777764

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.77  E-value=1.2e-18  Score=174.32  Aligned_cols=130  Identities=29%  Similarity=0.409  Sum_probs=109.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCH----------------------------
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN----------------------------   54 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~----------------------------   54 (438)
                      .|.||||+||..|+.++|++|++    .|+++|.+|..|+||||+||..|+.                            
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~----~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~  111 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLT----RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNN  111 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHc
Confidence            46789999999999999999998    6888999999999999999876543                            


Q ss_pred             ------------------------------------HHHHHHHHCCCCcccccCC-CCcHHHHHhhcccccCcHHHHHHH
Q 013706           55 ------------------------------------EAAKLLLAHGAFIEAKANN-GMTPLHLSVWYSIRSEDYATVKTL   97 (438)
Q Consensus        55 ------------------------------------~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~~~~~L   97 (438)
                                                          +++++|+++|++++.++.. |.||||+|+    ..|+.+++++|
T Consensus       112 ~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~----~~~~~~iv~~L  187 (477)
T PHA02878        112 RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYAT----ENKDQRLTELL  187 (477)
T ss_pred             CCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHH----hCCCHHHHHHH
Confidence                                                2667777888888888888 999999999    78899999999


Q ss_pred             HhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           98 LEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        98 l~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      +++|++++..|..|+||| |.|+..+..+++++|+..|++...+
T Consensus       188 l~~gad~n~~d~~g~tpL-h~A~~~~~~~iv~~Ll~~ga~in~~  230 (477)
T PHA02878        188 LSYGANVNIPDKTNNSPL-HHAVKHYNKPIVHILLENGASTDAR  230 (477)
T ss_pred             HHCCCCCCCcCCCCCCHH-HHHHHhCCHHHHHHHHHcCCCCCCC
Confidence            999999999999999999 5565677888899998887765443

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.77  E-value=8.8e-18  Score=165.84  Aligned_cols=189  Identities=18%  Similarity=0.225  Sum_probs=136.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------  232 (438)
                      ..|++++|++.+++.|..++..               .+.+..+||+||||||||++|+++|+.++........      
T Consensus        12 ktFddVIGQe~vv~~L~~aI~~---------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~   76 (702)
T PRK14960         12 RNFNELVGQNHVSRALSSALER---------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA   76 (702)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence            5799999999999998887441               1234557999999999999999999998642211111      


Q ss_pred             -----------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          233 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       233 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                 .++++++++-      ..-..++.+++.+       +..|+||||+|.|.+           ...+.|+
T Consensus        77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALL  139 (702)
T PRK14960         77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALL  139 (702)
T ss_pred             HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHH
Confidence                       2344444321      1223455555443       347999999999976           3458899


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..+++  +.+.+|++++....  +   .+.+++|+ .+++|.+++.+++...++..+.++.           ..++++++
T Consensus       140 KtLEEPP~~v~FILaTtd~~k--I---p~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEg-----------I~id~eAL  202 (702)
T PRK14960        140 KTLEEPPEHVKFLFATTDPQK--L---PITVISRC-LQFTLRPLAVDEITKHLGAILEKEQ-----------IAADQDAI  202 (702)
T ss_pred             HHHhcCCCCcEEEEEECChHh--h---hHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  56677776654332  2   56778898 8999999999999999999998753           34677888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++...       .|+.|.+.++++++...
T Consensus       203 ~~IA~~S-------~GdLRdALnLLDQaIay  226 (702)
T PRK14960        203 WQIAESA-------QGSLRDALSLTDQAIAY  226 (702)
T ss_pred             HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence            8888765       68889999998887643

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=5.1e-19  Score=149.17  Aligned_cols=129  Identities=22%  Similarity=0.218  Sum_probs=104.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCC---CCCcccccccCCCChHHHHHHHcCCH---HHHHHHHHCCCCccccc-CCC
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPG---NDKVELEAQNMYGETPLHMAAKNGCN---EAAKLLLAHGAFIEAKA-NNG   74 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~~-~~g   74 (438)
                      ..|.||||+||..|+..  .++.....   ..+..++..|..|+||||+|+..|+.   +++++|++.|++++.++ ..|
T Consensus        15 ~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g   92 (154)
T PHA02736         15 IEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFG   92 (154)
T ss_pred             CCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCC
Confidence            47999999999999843  33221100   01223556788999999999999986   46899999999999998 599


Q ss_pred             CcHHHHHhhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           75 MTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        75 ~t~L~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      +||||+|+    ..++.+++++|+. .|++++.+|..|.||| +.|+..+..+++++|+..+++
T Consensus        93 ~T~Lh~A~----~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL-~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         93 NTPLHIAV----YTQNYELATWLCNQPGVNMEILNYAFKTPY-YVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CcHHHHHH----HhCCHHHHHHHHhCCCCCCccccCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence            99999999    7899999999997 4999999999999999 555567788999999887754

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.77  E-value=8.4e-18  Score=165.58  Aligned_cols=187  Identities=17%  Similarity=0.240  Sum_probs=133.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCC-----cCCC
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGI-----LPTD  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~-----~~~~  232 (438)
                      +.|++++|++.+++.|.+.+..                ....| +||+||+|||||++|+.+++.++..+.     ....
T Consensus        13 qtFddVIGQe~vv~~L~~al~~----------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~   76 (700)
T PRK12323         13 RDFTTLVGQEHVVRALTHALEQ----------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ   76 (700)
T ss_pred             CcHHHHcCcHHHHHHHHHHHHh----------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence            4799999999999998887441                22334 699999999999999999999975211     0011


Q ss_pred             -----------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHH
Q 013706          233 -----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIE  288 (438)
Q Consensus       233 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~  288 (438)
                                       .+++++.++-      ..-..++++++..       +..|+||||+|.|..           .
T Consensus        77 PCG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~  139 (700)
T PRK12323         77 PCGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------H  139 (700)
T ss_pred             CCcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------H
Confidence                             2333333211      1223455555442       347999999999976           4


Q ss_pred             HHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccccccc
Q 013706          289 ALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSS  366 (438)
Q Consensus       289 ~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~  366 (438)
                      ..|.||+.||+  ++++||++|+...  .+   .|.+++|+ ..+.|..++.+++.+.+++.+.++.           ..
T Consensus       140 AaNALLKTLEEPP~~v~FILaTtep~--kL---lpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Eg-----------i~  202 (700)
T PRK12323        140 AFNAMLKTLEEPPEHVKFILATTDPQ--KI---PVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEG-----------IA  202 (700)
T ss_pred             HHHHHHHhhccCCCCceEEEEeCChH--hh---hhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcC-----------CC
Confidence            55999999998  6677777765433  23   68899998 9999999999999999999887642           33


Q ss_pred             ccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706          367 CSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  402 (438)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~  402 (438)
                      ++++++..+....       .|+.|+..++++++..
T Consensus       203 ~d~eAL~~IA~~A-------~Gs~RdALsLLdQaia  231 (700)
T PRK12323        203 HEVNALRLLAQAA-------QGSMRDALSLTDQAIA  231 (700)
T ss_pred             CCHHHHHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence            5667777666654       6778888888887664

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.77  E-value=2.5e-18  Score=180.83  Aligned_cols=172  Identities=22%  Similarity=0.264  Sum_probs=138.4

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc---CCcCCCCEEE
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE  236 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~---~~~~~~~~~~  236 (438)
                      .++.++|.+...+++.+++.                .....+++|+||||||||++|+.+|..+...   .......++.
T Consensus       177 ~~~~~igr~~ei~~~~~~L~----------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~  240 (821)
T CHL00095        177 NLDPVIGREKEIERVIQILG----------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT  240 (821)
T ss_pred             CCCCCCCcHHHHHHHHHHHc----------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence            47889999988888877632                2356799999999999999999999988532   2233457888


Q ss_pred             eeccccc--ccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706          237 VQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  311 (438)
Q Consensus       237 ~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~  311 (438)
                      ++.+.++  .+|.|+.+.+++.+|+++.   +.||||||+|.+...++..++   ..+.+.|...+..+.+.+|++||.+
T Consensus       241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~---~~~a~lLkp~l~rg~l~~IgaTt~~  317 (821)
T CHL00095        241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA---IDAANILKPALARGELQCIGATTLD  317 (821)
T ss_pred             eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc---ccHHHHhHHHHhCCCcEEEEeCCHH
Confidence            8888776  4688999999999998653   479999999999876543222   1455777888899999999999999


Q ss_pred             hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhc
Q 013706          312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN  351 (438)
Q Consensus       312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~  351 (438)
                      .+...+..+|++.+|| ..|.++.|+.++...|++.....
T Consensus       318 ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~  356 (821)
T CHL00095        318 EYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSR  356 (821)
T ss_pred             HHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHH
Confidence            9988778899999999 56899999999999999876554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.77  E-value=2.3e-18  Score=170.34  Aligned_cols=120  Identities=33%  Similarity=0.429  Sum_probs=106.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.||||+||..|+.++|++|++    .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus       123 ~g~T~Lh~A~~~~~~~~v~~Ll~----~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~  198 (434)
T PHA02874        123 ELKTFLHYAIKKGDLESIKMLFE----YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAA  198 (434)
T ss_pred             CCccHHHHHHHCCCHHHHHHHHh----CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            68999999999999999999999    68899999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL  132 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~  132 (438)
                          ..|+.+++++|++.|++++..+..|.||| |.|+..+. ..+.+|+
T Consensus       199 ----~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL-~~A~~~~~-~~i~~Ll  242 (434)
T PHA02874        199 ----EYGDYACIKLLIDHGNHIMNKCKNGFTPL-HNAIIHNR-SAIELLI  242 (434)
T ss_pred             ----HcCCHHHHHHHHhCCCCCcCCCCCCCCHH-HHHHHCCh-HHHHHHH
Confidence                88999999999999999988888888888 44443444 3444444

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.77  E-value=1.6e-18  Score=173.30  Aligned_cols=208  Identities=17%  Similarity=0.224  Sum_probs=152.4

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|.+...+++.+.++.+              +....+++|+|++||||+++|++++...    .....+|+.+
T Consensus       200 ~~~f~~~ig~s~~~~~~~~~~~~~--------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s----~r~~~pfv~i  261 (520)
T PRK10820        200 DSAFSQIVAVSPKMRQVVEQARKL--------------AMLDAPLLITGDTGTGKDLLAYACHLRS----PRGKKPFLAL  261 (520)
T ss_pred             cccccceeECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCccHHHHHHHHHHhC----CCCCCCeEEe
Confidence            357899999998777777665543              2356789999999999999999998743    3445699999


Q ss_pred             ecccccc-----cccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----
Q 013706          238 QRTDLVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----  300 (438)
Q Consensus       238 ~~~~~~~-----~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----  300 (438)
                      +|+.+..     ..+|+..       ......|+.|.+|+||||||+.|.+..|           ..|+..++++     
T Consensus       262 nca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q-----------~~Ll~~l~~~~~~~~  330 (520)
T PRK10820        262 NCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQ-----------AKLLRFLNDGTFRRV  330 (520)
T ss_pred             ccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHH-----------HHHHHHHhcCCcccC
Confidence            9987543     3455432       1123468889999999999999987555           7788887653     


Q ss_pred             --------CEEEEEecCChhHHHHh--hhCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccc
Q 013706          301 --------KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSC  367 (438)
Q Consensus       301 --------~v~vi~~~~~~~~~~~~--~~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~  367 (438)
                              ++.+|++|+.+..+.+-  .-.+.|..|+ ...|.+|++..  +++..++..++.+...+   +|.. .+.+
T Consensus       331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~---~g~~-~~~l  406 (520)
T PRK10820        331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADE---QGVP-RPKL  406 (520)
T ss_pred             CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHH---cCCC-CCCc
Confidence                    35788877666543321  0124566676 56788888875  68888888888875431   1211 2468


Q ss_pred             cHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          368 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +++++..+..+.|      |||.|+|++++++|....
T Consensus       407 s~~a~~~L~~y~W------PGNvreL~nvl~~a~~~~  437 (520)
T PRK10820        407 AADLNTVLTRYGW------PGNVRQLKNAIYRALTQL  437 (520)
T ss_pred             CHHHHHHHhcCCC------CCHHHHHHHHHHHHHHhC
Confidence            9999999999999      999999999999998754

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.77  E-value=3.2e-18  Score=173.52  Aligned_cols=222  Identities=21%  Similarity=0.276  Sum_probs=147.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEE
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~  235 (438)
                      ..|++++|++...+.+.+.+.                ...+.+++|+||||||||++|+++++.......   ....+|+
T Consensus       151 ~~~~~iiGqs~~~~~l~~~ia----------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv  214 (615)
T TIGR02903       151 RAFSEIVGQERAIKALLAKVA----------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV  214 (615)
T ss_pred             CcHHhceeCcHHHHHHHHHHh----------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence            468889999987776654321                234668999999999999999999987643221   1245788


Q ss_pred             Eeeccccc-------ccccccchHH-----------------HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHH
Q 013706          236 EVQRTDLV-------GEFVGHTGPK-----------------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALE  291 (438)
Q Consensus       236 ~~~~~~~~-------~~~~g~~~~~-----------------~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~  291 (438)
                      .+++..+.       ..++|.....                 ....+..+.+|+|||||++.|.+..|           .
T Consensus       215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q-----------~  283 (615)
T TIGR02903       215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ-----------N  283 (615)
T ss_pred             EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-----------H
Confidence            88876541       1233322111                 11234567789999999999986444           5


Q ss_pred             HHHhhccCC------------------------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHH
Q 013706          292 EIMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL  341 (438)
Q Consensus       292 ~ll~~~~~~------------------------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~  341 (438)
                      .|+..++++                              .+++|++|+.++. .+   +|+|++|| ..+.|++++.+++
T Consensus       284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-~l---~~aLrSR~-~~i~~~pls~edi  358 (615)
T TIGR02903       284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE-EI---NPALRSRC-AEVFFEPLTPEDI  358 (615)
T ss_pred             HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc-cc---CHHHHhce-eEEEeCCCCHHHH
Confidence            566655432                              2566766665443 23   78999999 5789999999999


Q ss_pred             HHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhc
Q 013706          342 AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI  421 (438)
Q Consensus       342 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i  421 (438)
                      .+|+++.+.+..           ..++++++..+..+.|        ++|...++++.+...+..+... ..+......|
T Consensus       359 ~~Il~~~a~~~~-----------v~ls~eal~~L~~ys~--------~gRraln~L~~~~~~~~~~~~~-~~~~~~~~~I  418 (615)
T TIGR02903       359 ALIVLNAAEKIN-----------VHLAAGVEELIARYTI--------EGRKAVNILADVYGYALYRAAE-AGKENDKVTI  418 (615)
T ss_pred             HHHHHHHHHHcC-----------CCCCHHHHHHHHHCCC--------cHHHHHHHHHHHHHHHHHHHHH-hccCCCCeeE
Confidence            999999887532           2356777777777655        2466667887776654433220 0011223579


Q ss_pred             cHHHHHHHHHH
Q 013706          422 TLEDLEAGLKL  432 (438)
Q Consensus       422 ~~~d~~~a~~~  432 (438)
                      +.+|+++++..
T Consensus       419 ~~edv~~~l~~  429 (615)
T TIGR02903       419 TQDDVYEVIQI  429 (615)
T ss_pred             CHHHHHHHhCC
Confidence            99999998764

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.77  E-value=2e-17  Score=162.35  Aligned_cols=190  Identities=18%  Similarity=0.259  Sum_probs=138.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  231 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-------  231 (438)
                      ..|++++|++.+.+.+...+..               .+.+.++||+||||||||++|+++|+.+........       
T Consensus        18 ~~f~dliGq~~vv~~L~~ai~~---------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C   82 (507)
T PRK06645         18 SNFAELQGQEVLVKVLSYTILN---------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC   82 (507)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence            5799999999999888765321               234568999999999999999999999965321111       


Q ss_pred             --------------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHH
Q 013706          232 --------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEAL  290 (438)
Q Consensus       232 --------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~  290 (438)
                                    ..++++++++      ......++.+++.+       +..|+||||+|.+..           ..+
T Consensus        83 ~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~  145 (507)
T PRK06645         83 EQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAF  145 (507)
T ss_pred             CCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHH
Confidence                          1223333221      11234566666655       347999999999965           455


Q ss_pred             HHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccccccccc
Q 013706          291 EEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCS  368 (438)
Q Consensus       291 ~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~  368 (438)
                      +.|+..+++  ..+++|++++...  .+   .+++++|+ ..++|.+++.+++..+++..++++.           ..++
T Consensus       146 naLLk~LEepp~~~vfI~aTte~~--kI---~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~eg-----------i~ie  208 (507)
T PRK06645        146 NALLKTLEEPPPHIIFIFATTEVQ--KI---PATIISRC-QRYDLRRLSFEEIFKLLEYITKQEN-----------LKTD  208 (507)
T ss_pred             HHHHHHHhhcCCCEEEEEEeCChH--Hh---hHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcC-----------CCCC
Confidence            889999987  5667777654332  33   67889998 7899999999999999999998753           3457


Q ss_pred             HHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          369 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ++++..++...       .|+.|.+.+.++++...+
T Consensus       209 ~eAL~~Ia~~s-------~GslR~al~~Ldkai~~~  237 (507)
T PRK06645        209 IEALRIIAYKS-------EGSARDAVSILDQAASMS  237 (507)
T ss_pred             HHHHHHHHHHc-------CCCHHHHHHHHHHHHHhh
Confidence            78888887754       688899999999987654

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.77  E-value=1.2e-18  Score=179.69  Aligned_cols=205  Identities=16%  Similarity=0.183  Sum_probs=151.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|.+...+.+.+.+..+              +....+|||+|++||||+++|++|+...    .....+|+.++|
T Consensus       323 ~~~~l~g~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s----~r~~~pfv~vnc  384 (638)
T PRK11388        323 TFDHMPQDSPQMRRLIHFGRQA--------------AKSSFPVLLCGEEGVGKALLAQAIHNES----ERAAGPYIAVNC  384 (638)
T ss_pred             cccceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCcCHHHHHHHHHHhC----CccCCCeEEEEC
Confidence            5888999988777777665544              2456789999999999999999999854    334569999999


Q ss_pred             cccc-----ccccccc----hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC----------
Q 013706          240 TDLV-----GEFVGHT----GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------  300 (438)
Q Consensus       240 ~~~~-----~~~~g~~----~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------  300 (438)
                      +.+.     +.++|+.    .......|+.|.+|+||||||+.|....|           ..|++.++++          
T Consensus       385 ~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q-----------~~Ll~~l~~~~~~~~~~~~~  453 (638)
T PRK11388        385 QLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQ-----------SALLQVLKTGVITRLDSRRL  453 (638)
T ss_pred             CCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHH-----------HHHHHHHhcCcEEeCCCCce
Confidence            8653     4466643    11112357788999999999999987555           7888888764          


Q ss_pred             ---CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          301 ---KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       301 ---~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                         ++.+|++|+.+....+..  -.+.|..|+ ...|.+|++..  +++..++..++.+...     .+.....++++++
T Consensus       454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~-----~~~~~~~~s~~a~  528 (638)
T PRK11388        454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEK-----RFSTRLKIDDDAL  528 (638)
T ss_pred             EEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHH-----HhCCCCCcCHHHH
Confidence               356888877665433211  123444566 66788888875  7899999999987642     1222346899999


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ..+..+.|      |||.|+|+++++++...+
T Consensus       529 ~~L~~y~W------PGNvreL~~~l~~~~~~~  554 (638)
T PRK11388        529 ARLVSYRW------PGNDFELRSVIENLALSS  554 (638)
T ss_pred             HHHHcCCC------CChHHHHHHHHHHHHHhC
Confidence            99999999      999999999999988654

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.77  E-value=4.9e-18  Score=169.83  Aligned_cols=207  Identities=20%  Similarity=0.223  Sum_probs=154.0

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      ...+++|.+...+.+.+.+..+              +....+|||+|++||||+++|++|+...    .....+|+.++|
T Consensus       185 ~~~~iig~s~~~~~~~~~i~~~--------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s----~r~~~p~v~v~c  246 (509)
T PRK05022        185 KEGEMIGQSPAMQQLKKEIEVV--------------AASDLNVLILGETGVGKELVARAIHAAS----PRADKPLVYLNC  246 (509)
T ss_pred             cCCceeecCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCccHHHHHHHHHHhC----CcCCCCeEEEEc
Confidence            4567999999888888776654              3567899999999999999999999854    334569999999


Q ss_pred             cccc-----ccccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706          240 TDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  300 (438)
Q Consensus       240 ~~~~-----~~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  300 (438)
                      +.+.     +.++|+...       .....|+.|.+|+|||||||.|.+..|           ..|+..++++       
T Consensus       247 ~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~  315 (509)
T PRK05022        247 AALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQ-----------AKLLRVLQYGEIQRVGS  315 (509)
T ss_pred             ccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHH-----------HHHHHHHhcCCEeeCCC
Confidence            8753     235564221       122357889999999999999997544           7888888653       


Q ss_pred             ------CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccH
Q 013706          301 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM  369 (438)
Q Consensus       301 ------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~  369 (438)
                            ++.+|++|+.+....+..  ..+.|..|+ ...|.+|++..  +++..++.+++.+...+   ++. -...+++
T Consensus       316 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~---~~~-~~~~~s~  391 (509)
T PRK05022        316 DRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRAR---LGL-RSLRLSP  391 (509)
T ss_pred             CcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHH---cCC-CCCCCCH
Confidence                  457888877665443211  124455576 45688888874  78999999999876431   121 2246899


Q ss_pred             HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706          370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      +++..+..+.|      |||.|+|++++++|+..+.
T Consensus       392 ~a~~~L~~y~W------PGNvrEL~~~i~ra~~~~~  421 (509)
T PRK05022        392 AAQAALLAYDW------PGNVRELEHVISRAALLAR  421 (509)
T ss_pred             HHHHHHHhCCC------CCcHHHHHHHHHHHHHhcC
Confidence            99999999999      9999999999999987654

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.77  E-value=9.2e-18  Score=170.49  Aligned_cols=187  Identities=16%  Similarity=0.204  Sum_probs=133.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCE---
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDRV---  234 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~---  234 (438)
                      ..|++++|++.+++.|+..+.                .....| +||+||||||||++||++|+.++........++   
T Consensus        13 ~tFddIIGQe~Iv~~LknaI~----------------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C   76 (944)
T PRK14949         13 ATFEQMVGQSHVLHALTNALT----------------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC   76 (944)
T ss_pred             CCHHHhcCcHHHHHHHHHHHH----------------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence            579999999999998887643                123455 589999999999999999999875321111111   


Q ss_pred             --------------EEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706          235 --------------TEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI  293 (438)
Q Consensus       235 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l  293 (438)
                                    +++++++-      .....++.+++.       .+..|+||||+|.|..           ..++.|
T Consensus        77 ~sC~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-----------eAqNAL  139 (944)
T PRK14949         77 SSCVEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-----------SSFNAL  139 (944)
T ss_pred             hHHHHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence                          22222210      111234444432       2347999999999976           456999


Q ss_pred             HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706          294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  371 (438)
Q Consensus       294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  371 (438)
                      |+.|++  +.+++|++|+....  +   .+.+++|+ .+++|.+++.+++...+++.+..+.           ..+++++
T Consensus       140 LKtLEEPP~~vrFILaTTe~~k--L---l~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~Eg-----------I~~edeA  202 (944)
T PRK14949        140 LKTLEEPPEHVKFLLATTDPQK--L---PVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQ-----------LPFEAEA  202 (944)
T ss_pred             HHHHhccCCCeEEEEECCCchh--c---hHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence            999997  66777777654432  2   57789998 8999999999999999999887642           3457778


Q ss_pred             HHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706          372 IAALIEKETTEKQRREMNGGLVDPMLVNARE  402 (438)
Q Consensus       372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~  402 (438)
                      +..++...       .|+.|.+.++++++..
T Consensus       203 L~lIA~~S-------~Gd~R~ALnLLdQala  226 (944)
T PRK14949        203 LTLLAKAA-------NGSMRDALSLTDQAIA  226 (944)
T ss_pred             HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence            88777654       6778889999887774

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.77  E-value=4.4e-18  Score=178.66  Aligned_cols=173  Identities=20%  Similarity=0.263  Sum_probs=134.8

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc---CCcCCCCEE
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~---~~~~~~~~~  235 (438)
                      ..++.++|.+....++.+++.                .....+++|+||||||||++|+.+|..+...   ..+....++
T Consensus       175 ~~l~~vigr~~ei~~~i~iL~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~  238 (857)
T PRK10865        175 GKLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL  238 (857)
T ss_pred             CCCCcCCCCHHHHHHHHHHHh----------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence            357889999986555555422                2355789999999999999999999987421   112345777


Q ss_pred             Eeeccccc--ccccccchHHHHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706          236 EVQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      .++...++  .+|.|+.+..++.+|++.    .+.||||||+|.+...+.+++   +..+.+.|...+..+.+.+|++||
T Consensus       239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~---~~d~~~~lkp~l~~g~l~~IgaTt  315 (857)
T PRK10865        239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALARGELHCVGATT  315 (857)
T ss_pred             EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc---chhHHHHhcchhhcCCCeEEEcCC
Confidence            77777765  458899999999998763    347999999999987654222   124557788899999999999999


Q ss_pred             ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhc
Q 013706          310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN  351 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~  351 (438)
                      .+++...+..||++.|||. .|.++.|+.+++..|++....+
T Consensus       316 ~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~  356 (857)
T PRK10865        316 LDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKER  356 (857)
T ss_pred             CHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence            9999877788999999995 6889999999999999876554

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.77  E-value=1.6e-17  Score=164.38  Aligned_cols=189  Identities=15%  Similarity=0.180  Sum_probs=135.3

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------  232 (438)
                      ..|++++|++.+++.|...+..-               ..+..+||+||||||||++|+++|+.++........      
T Consensus        13 ~~f~divGq~~v~~~L~~~~~~~---------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~   77 (509)
T PRK14958         13 RCFQEVIGQAPVVRALSNALDQQ---------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE   77 (509)
T ss_pred             CCHHHhcCCHHHHHHHHHHHHhC---------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence            47999999999999988875311               123347999999999999999999999753222111      


Q ss_pred             -----------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          233 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       233 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                 .++++++++      ...-..++.+++..       +..|+||||+|.|.+           ...|.|+
T Consensus        78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLL  140 (509)
T PRK14958         78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALL  140 (509)
T ss_pred             HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHH
Confidence                       144444432      11223455555543       337999999999986           3458999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..|++  ..+++|++|+..  ..+   .+.+++|+ ..++|.+++.+++...++..+.++.           ..++++++
T Consensus       141 k~LEepp~~~~fIlattd~--~kl---~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~eg-----------i~~~~~al  203 (509)
T PRK14958        141 KTLEEPPSHVKFILATTDH--HKL---PVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEEN-----------VEFENAAL  203 (509)
T ss_pred             HHHhccCCCeEEEEEECCh--Hhc---hHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  467677766432  223   55689998 8999999999999999999988753           33567788


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++...       .|+.|.+.++++++...
T Consensus       204 ~~ia~~s-------~GslR~al~lLdq~ia~  227 (509)
T PRK14958        204 DLLARAA-------NGSVRDALSLLDQSIAY  227 (509)
T ss_pred             HHHHHHc-------CCcHHHHHHHHHHHHhc
Confidence            8777764       57788899999887543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.77  E-value=2.6e-18  Score=169.04  Aligned_cols=128  Identities=27%  Similarity=0.344  Sum_probs=112.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcc-cccCCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE-AKANNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A   81 (438)
                      .|.||||+|+..|+.+++++|++    .|++++..+..+.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|
T Consensus        34 ~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  109 (413)
T PHA02875         34 DGISPIKLAMKFRDSEAIKLLMK----HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA  109 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh----CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHH
Confidence            68999999999999999999998    677888888889999999999999999999999998764 4567899999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      +    ..++.+++++|+++|++++..+..|.||| |.|+..+..+++++|+..+++..
T Consensus       110 ~----~~~~~~iv~~Ll~~gad~~~~~~~g~tpL-h~A~~~~~~~~v~~Ll~~g~~~~  162 (413)
T PHA02875        110 T----ILKKLDIMKLLIARGADPDIPNTDKFSPL-HLAVMMGDIKGIELLIDHKACLD  162 (413)
T ss_pred             H----HhCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhcCCCCC
Confidence            9    78899999999999999999999999999 55666778889999988877543

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.76  E-value=1.8e-17  Score=161.37  Aligned_cols=190  Identities=17%  Similarity=0.190  Sum_probs=139.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc---------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------  229 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~---------  229 (438)
                      +.|++++|++.+.+.+...+..               .+.+.++||+||||||||++|+.+|+.++.....         
T Consensus        10 ~~f~dliGQe~vv~~L~~a~~~---------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~   74 (491)
T PRK14964         10 SSFKDLVGQDVLVRILRNAFTL---------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH   74 (491)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence            5799999999999988865331               1245579999999999999999999988643211         


Q ss_pred             --------CCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          230 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       230 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                              ....++++++++-      ..-..++.+++.+       +..|+||||+|.|..           ..+|.|+
T Consensus        75 ~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLL  137 (491)
T PRK14964         75 NCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALL  137 (491)
T ss_pred             HHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHH
Confidence                    1223455555421      1223456665544       347999999999975           4569999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..|++  ..+++|++++..  ..+   .+.+++|+ ..+.|.+++.+++.+.+...+.++.           ..++++++
T Consensus       138 K~LEePp~~v~fIlatte~--~Kl---~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Eg-----------i~i~~eAL  200 (491)
T PRK14964        138 KTLEEPAPHVKFILATTEV--KKI---PVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKEN-----------IEHDEESL  200 (491)
T ss_pred             HHHhCCCCCeEEEEEeCCh--HHH---HHHHHHhh-eeeecccccHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99997  567777766432  233   56788898 8899999999999999999988753           34677888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ..++...       .|+.|.+.+.++++....
T Consensus       201 ~lIa~~s-------~GslR~alslLdqli~y~  225 (491)
T PRK14964        201 KLIAENS-------SGSMRNALFLLEQAAIYS  225 (491)
T ss_pred             HHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence            8888765       578888999998887653

>PLN03025 replication factor C subunit; Provisional

Probab=99.76  E-value=1.5e-17  Score=156.93  Aligned_cols=183  Identities=20%  Similarity=0.244  Sum_probs=128.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++++|++.+.+.|+.++.                ....+|+||+||||||||++|+++|+++...+.  ...+++++
T Consensus        10 ~~l~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~eln   71 (319)
T PLN03025         10 TKLDDIVGNEDAVSRLQVIAR----------------DGNMPNLILSGPPGTGKTTSILALAHELLGPNY--KEAVLELN   71 (319)
T ss_pred             CCHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHhcccC--ccceeeec
Confidence            468999999999888887633                124468999999999999999999999854321  23466777


Q ss_pred             cccccccccccchHHHHHHHH---H-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC---CCEEEE
Q 013706          239 RTDLVGEFVGHTGPKTRRRIK---E-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVI  305 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~---~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~v~vi  305 (438)
                      +++..+.      ..++..++   +       ....|++|||+|.+....|           +.|+..|+.   ...+++
T Consensus        72 ~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq-----------~aL~~~lE~~~~~t~~il  134 (319)
T PLN03025         72 ASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ-----------QALRRTMEIYSNTTRFAL  134 (319)
T ss_pred             ccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH-----------HHHHHHHhcccCCceEEE
Confidence            7654221      12222221   1       1247999999999986444           667766664   333444


Q ss_pred             EecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          306 FAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       306 ~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      .++....   +   .|++++|+ ..++|++|+.+++...++..++++.           ..++++++..++...      
T Consensus       135 ~~n~~~~---i---~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~eg-----------i~i~~~~l~~i~~~~------  190 (319)
T PLN03025        135 ACNTSSK---I---IEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEK-----------VPYVPEGLEAIIFTA------  190 (319)
T ss_pred             EeCCccc---c---chhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc------
Confidence            4433332   2   67899998 7899999999999999999887753           345678888888765      


Q ss_pred             ccccccchHHHHHHHH
Q 013706          386 REMNGGLVDPMLVNAR  401 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~  401 (438)
                       .|+.|.+.+.++.+.
T Consensus       191 -~gDlR~aln~Lq~~~  205 (319)
T PLN03025        191 -DGDMRQALNNLQATH  205 (319)
T ss_pred             -CCCHHHHHHHHHHHH
Confidence             577788888887443

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.8e-17  Score=166.64  Aligned_cols=223  Identities=21%  Similarity=0.339  Sum_probs=162.5

Q ss_pred             HHHHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706          154 MDELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  232 (438)
Q Consensus       154 ~~~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~  232 (438)
                      +-.+...+ ..++|++.+...+.+.+       ++...|...+.+|...+||.||+|+|||.+|+++|..++-    ...
T Consensus       482 ll~le~~L~~rViGQd~AV~avs~aI-------rraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg----~e~  550 (786)
T COG0542         482 LLNLERRLKKRVIGQDEAVEAVSDAI-------RRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG----DEQ  550 (786)
T ss_pred             HHHHHHHHhcceeChHHHHHHHHHHH-------HHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC----CCc
Confidence            33344444 45889998877777654       3445666666667778999999999999999999999862    122


Q ss_pred             CEEEeeccccc---------cc---cccc-chHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC
Q 013706          233 RVTEVQRTDLV---------GE---FVGH-TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG  299 (438)
Q Consensus       233 ~~~~~~~~~~~---------~~---~~g~-~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~  299 (438)
                      .++.++-|++.         +.   |+|+ .+..+...++.-..+||++|||++.+|           +++|.||+.||+
T Consensus       551 aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp-----------dV~nilLQVlDd  619 (786)
T COG0542         551 ALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP-----------DVFNLLLQVLDD  619 (786)
T ss_pred             cceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH-----------HHHHHHHHHhcC
Confidence            66677666533         22   6775 344566677777789999999999998           788999999997


Q ss_pred             C-------------CEEEEEecCChh--HHHHh---------------------hhCcCccCCCCcceeCCCCCHHHHHH
Q 013706          300 G-------------KVVVIFAGYSEP--MKRVI---------------------ASNEGFCRRVTKFFHFNDFNSEELAK  343 (438)
Q Consensus       300 ~-------------~v~vi~~~~~~~--~~~~~---------------------~~~p~l~~R~~~~i~~~~~~~~e~~~  343 (438)
                      |             +.++|+|+|--.  +....                     .-.|+++.|++.+|.|.+++.+++.+
T Consensus       620 GrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~  699 (786)
T COG0542         620 GRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLER  699 (786)
T ss_pred             CeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHH
Confidence            3             347777764111  11000                     00189999999999999999999999


Q ss_pred             HHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          344 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       344 il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      |+..++.+...+...  ..+...+++++...+....+.    ....+|.++.++++-+...
T Consensus       700 Iv~~~L~~l~~~L~~--~~i~l~~s~~a~~~l~~~gyd----~~~GARpL~R~Iq~~i~~~  754 (786)
T COG0542         700 IVDLQLNRLAKRLAE--RGITLELSDEAKDFLAEKGYD----PEYGARPLRRAIQQEIEDP  754 (786)
T ss_pred             HHHHHHHHHHHHHHh--CCceEEECHHHHHHHHHhccC----CCcCchHHHHHHHHHHHHH
Confidence            999999988766553  345566789999999987762    2345788999988777654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.76  E-value=2e-18  Score=169.06  Aligned_cols=129  Identities=31%  Similarity=0.399  Sum_probs=118.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHH-CC-CCcccccCCCCcHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HG-AFIEAKANNGMTPLH   79 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g-~~~~~~~~~g~t~L~   79 (438)
                      .+|.||||+||..|++++|+.|+.    .|++++.++.++.||||.||..|+.++++-|++ .| ..+|..|..|.||||
T Consensus       271 ~dg~tpLH~a~r~G~~~svd~Ll~----~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLH  346 (929)
T KOG0510|consen  271 NDGCTPLHYAARQGGPESVDNLLG----FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLH  346 (929)
T ss_pred             ccCCchHHHHHHcCChhHHHHHHH----cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchh
Confidence            489999999999999999999999    799999999999999999999999999999998 55 457889999999999


Q ss_pred             HHhhcccccCcHHHHHHHHhCCCCCc---ccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           80 LSVWYSIRSEDYATVKTLLEYNADCS---AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        80 ~A~~~~~~~~~~~~~~~Ll~~ga~~~---~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      .|+    .+||..++++|++.|++..   -.|.+|.||| |.|+..++..+++.|+.+|++..
T Consensus       347 laa----~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaL-H~Aa~~g~~~av~~Li~~Ga~I~  404 (929)
T KOG0510|consen  347 LAA----KSGHDRVVQLLLNKGALFLNMSEADSDGNTAL-HLAAKYGNTSAVQKLISHGADIG  404 (929)
T ss_pred             hhh----hcCHHHHHHHHHhcChhhhcccccccCCchhh-hHHHHhccHHHHHHHHHcCCcee
Confidence            999    9999999999999999987   4599999999 67777889999999999998763

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.76  E-value=2e-18  Score=175.53  Aligned_cols=133  Identities=25%  Similarity=0.269  Sum_probs=84.4

Q ss_pred             CCCcHHHHHHH--cCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC--HHHHHHHHHCCCCcccccCCCCcHH
Q 013706            3 MAQTPLHVSAG--YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC--NEAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         3 ~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      .|.||||+|+.  +++.+++++|++    .|+++|.+|..|+||||+|+..|+  .+++++|+++|+++|.+|..|+|||
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVklLLe----~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPL  251 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILEWLCN----NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPI  251 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            56777776653  345677777776    566777777777777777777664  3667777777777777777777777


Q ss_pred             HHHhh---------------------------------cccccCcHHHHHHHHhCCCCCcccCCCCCcccccccc-CCCc
Q 013706           79 HLSVW---------------------------------YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN-GPGS  124 (438)
Q Consensus        79 ~~A~~---------------------------------~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~-~~~~  124 (438)
                      |+|+.                                 .+...|+.++++.|+++|++++.+|.+|+||||+++. ..++
T Consensus       252 h~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~  331 (764)
T PHA02716        252 MTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIS  331 (764)
T ss_pred             HHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCC
Confidence            65421                                 0124566677777777777777777777777744332 2345


Q ss_pred             hhHHHHHHhccchHH
Q 013706          125 AKLRELLLWHSEEQR  139 (438)
Q Consensus       125 ~~~~~lL~~~~~~~~  139 (438)
                      .+++++|+..|++..
T Consensus       332 ~eIVklLLe~GADIN  346 (764)
T PHA02716        332 TDIIKLLHEYGNDLN  346 (764)
T ss_pred             chHHHHHHHcCCCCc
Confidence            566666666665543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.76  E-value=5.5e-18  Score=167.59  Aligned_cols=133  Identities=27%  Similarity=0.387  Sum_probs=117.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCC-------------------CCcccccccCCCChHHHHHHHcCCHHHHHHHHHC
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGN-------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH   63 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~-------------------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   63 (438)
                      .|.||||.|+..|+.+++++|++++..                   .|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        67 ~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~  146 (434)
T PHA02874         67 KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY  146 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC
Confidence            577888888888888888888874321                   3466888899999999999999999999999999


Q ss_pred             CCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        64 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      |++++.+|..|.||||+|+    ..++.+++++|+++|++++..|..|+||| |.|+..+..+++++|+..+++...
T Consensus       147 gad~n~~d~~g~tpLh~A~----~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL-~~A~~~g~~~iv~~Ll~~g~~i~~  218 (434)
T PHA02874        147 GADVNIEDDNGCYPIHIAI----KHNFFDIIKLLLEKGAYANVKDNNGESPL-HNAAEYGDYACIKLLIDHGNHIMN  218 (434)
T ss_pred             CCCCCCcCCCCCCHHHHHH----HCCcHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCCCCcC
Confidence            9999999999999999999    88999999999999999999999999999 666667889999999988876433

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.76  E-value=1.8e-17  Score=158.80  Aligned_cols=189  Identities=14%  Similarity=0.184  Sum_probs=130.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----  233 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~-----  233 (438)
                      ..|++++|++.+++.+...+..               ...+..+||+||||||||++|+++|+.+.........+     
T Consensus        13 ~~~~~iiGq~~~~~~l~~~~~~---------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~   77 (363)
T PRK14961         13 QYFRDIIGQKHIVTAISNGLSL---------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI   77 (363)
T ss_pred             CchhhccChHHHHHHHHHHHHc---------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            5799999999999988876431               11233469999999999999999999886322111111     


Q ss_pred             ------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          234 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       234 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                  ++++++++      ......++.+++..       ...|+||||+|.+..           ...+.|+
T Consensus        78 ~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLL  140 (363)
T PRK14961         78 ICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALL  140 (363)
T ss_pred             HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHH
Confidence                        22222211      01123345554432       236999999999864           3458899


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..+++  ..+.+|++++..  ..+   .+++++|+ ..++|++|+.+++.++++..+++..           ..++++++
T Consensus       141 k~lEe~~~~~~fIl~t~~~--~~l---~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g-----------~~i~~~al  203 (363)
T PRK14961        141 KTLEEPPQHIKFILATTDV--EKI---PKTILSRC-LQFKLKIISEEKIFNFLKYILIKES-----------IDTDEYAL  203 (363)
T ss_pred             HHHhcCCCCeEEEEEcCCh--Hhh---hHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99986  556666665432  333   67889998 8899999999999999999887642           33567777


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++...       .|+.|.+.+.++++...
T Consensus       204 ~~ia~~s-------~G~~R~al~~l~~~~~~  227 (363)
T PRK14961        204 KLIAYHA-------HGSMRDALNLLEHAINL  227 (363)
T ss_pred             HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence            7777654       57788888988887643

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=4.4e-18  Score=156.13  Aligned_cols=119  Identities=25%  Similarity=0.272  Sum_probs=101.6

Q ss_pred             CCC-cHHHHHHHcCCHHHHHHHhcCCCCCCccccccc----CCCChHHHHHHHcCCHHHHHHHHHCCCCcccc-cCCCCc
Q 013706            3 MAQ-TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN----MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANNGMT   76 (438)
Q Consensus         3 ~g~-tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t   76 (438)
                      .|. ++||.|+..|+.+++++|++    .|+++|.++    ..|.||||+|+..++.+++++|+++|+++|.+ +..|.|
T Consensus        31 ~~~~~lL~~A~~~~~~eivk~LL~----~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         31 ICIANILYSSIKFHYTDIIDAILK----LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             CCCCHHHHHHHHcCCHHHHHHHHH----CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            444 46777777799999999999    788999874    58999999999999999999999999999996 568999


Q ss_pred             HHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHH
Q 013706           77 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLREL  130 (438)
Q Consensus        77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~l  130 (438)
                      |||+|+    ..++.+++++|+..|++++.+|..|+||+++++ ..+...+..+
T Consensus       107 pLh~Aa----~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~-~~~~~~~~~~  155 (300)
T PHA02884        107 PLYISV----LHGCLKCLEILLSYGADINIQTNDMVTPIELAL-MICNNFLAFM  155 (300)
T ss_pred             HHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HhCChhHHHH
Confidence            999999    889999999999999999999999999995444 3344444433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.75  E-value=3.3e-18  Score=173.99  Aligned_cols=109  Identities=26%  Similarity=0.293  Sum_probs=75.5

Q ss_pred             CCCcHHHHHHHcCC--HHHHHHHhcCCCCCCcccccccCCCChHHHHH--------------------------------
Q 013706            3 MAQTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEAQNMYGETPLHMA--------------------------------   48 (438)
Q Consensus         3 ~g~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A--------------------------------   48 (438)
                      .|+||||+|+..|+  .++|++|++    .|+++|.+|..|+||||+|                                
T Consensus       211 ~G~TPLH~Aa~~g~~~~eIVklLLe----~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~  286 (764)
T PHA02716        211 HLITPLHTYLITGNVCASVIKKIIE----LGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILH  286 (764)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhH
Confidence            57777777777774  477777777    5677777777777777754                                


Q ss_pred             -----HHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccc
Q 013706           49 -----AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH  117 (438)
Q Consensus        49 -----~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~  117 (438)
                           +..|+.+++++|++.|++++.+|..|+||||+|+..  ..++.+++++|+++|++++.+|..|+||||+
T Consensus       287 ~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~--~~~~~eIVklLLe~GADIN~kD~~G~TPLH~  358 (764)
T PHA02716        287 SYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILR--HNISTDIIKLLHEYGNDLNEPDNIGNTVLHT  358 (764)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHH--hCCCchHHHHHHHcCCCCccCCCCCCCHHHH
Confidence                 234566777777777777777777777777776521  2345677777777777777777777777743

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.75  E-value=5.6e-18  Score=170.13  Aligned_cols=131  Identities=31%  Similarity=0.421  Sum_probs=110.6

Q ss_pred             CCCCcHHHHHHHcC--CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCC-----
Q 013706            2 QMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG-----   74 (438)
Q Consensus         2 ~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-----   74 (438)
                      ..|+||||+|+..|  +.+++++|++    .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|     
T Consensus       139 ~~g~t~L~~A~~~~~~~~~iv~~Ll~----~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~  214 (480)
T PHA03100        139 SDGENLLHLYLESNKIDLKILKLLID----KGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTI  214 (480)
T ss_pred             CCCCcHHHHHHHcCCChHHHHHHHHH----CCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHH
Confidence            36889999999998  8999999998    688888888889999999999999999999999999888888888     


Q ss_pred             -CcHHHHHhhcccccCc--HHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           75 -MTPLHLSVWYSIRSED--YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        75 -~t~L~~A~~~~~~~~~--~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                       .||||+|+    ..++  .+++++|+++|++++.+|..|.||| |.|+..++.+++++|+..|++....
T Consensus       215 ~~t~l~~a~----~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL-~~A~~~~~~~iv~~Ll~~gad~n~~  279 (480)
T PHA03100        215 FETPLHIAA----CYNEITLEVVNYLLSYGVPINIKDVYGFTPL-HYAVYNNNPEFVKYLLDLGANPNLV  279 (480)
T ss_pred             HHhHHHHHH----HhCcCcHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCcc
Confidence             88888888    6677  8888999988999888888899998 5555567788888888888765543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.75  E-value=1.6e-18  Score=144.55  Aligned_cols=127  Identities=28%  Similarity=0.304  Sum_probs=100.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      ++++|+.+++...|++.+..+.+      .-+|..|..|.|||+||+..|++++|++|++.|++++...+.-.++|.+|+
T Consensus       128 ~p~s~~slsVhql~L~~~~~~~~------n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt  201 (296)
T KOG0502|consen  128 MPWSPLSLSVHQLHLDVVDLLVN------NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLAT  201 (296)
T ss_pred             ccCChhhHHHHHHHHHHHHHHhh------ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHh
Confidence            57788888888888877777665      247778888888888888888888888888888888888777788888888


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                          +.|..+++++||..+.|+|..|.+|.||| ..|.++++-++++.|+..|++...
T Consensus       202 ----~ggytdiV~lLL~r~vdVNvyDwNGgTpL-lyAvrgnhvkcve~Ll~sGAd~t~  254 (296)
T KOG0502|consen  202 ----RGGYTDIVELLLTREVDVNVYDWNGGTPL-LYAVRGNHVKCVESLLNSGADVTQ  254 (296)
T ss_pred             ----cCChHHHHHHHHhcCCCcceeccCCCcee-eeeecCChHHHHHHHHhcCCCccc
Confidence                77888888888888888888888888888 666677788888888877776444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=2.1e-18  Score=149.55  Aligned_cols=126  Identities=28%  Similarity=0.386  Sum_probs=108.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      -|++||||||..||..+|+.|++    .|+.+|..+.-..||||+|+..||.++|+.|+++.+|+|+.+..|.|||||||
T Consensus        33 hgfsplhwaakegh~aivemll~----rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyac  108 (448)
T KOG0195|consen   33 HGFSPLHWAAKEGHVAIVEMLLS----RGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYAC  108 (448)
T ss_pred             cCcchhhhhhhcccHHHHHHHHh----cccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhh
Confidence            48999999999999999999999    78999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      +|    |...+++-|+..|+.+++-+++|.||+ -.+...-..-+.++-.+.|..
T Consensus       109 fw----gydqiaedli~~ga~v~icnk~g~tpl-dkakp~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen  109 FW----GYDQIAEDLISCGAAVNICNKKGMTPL-DKAKPMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             hh----cHHHHHHHHHhccceeeecccCCCCch-hhhchHHHHHHHHHHHHhCCC
Confidence            65    567899999999999999999999999 444432222233333344443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.75  E-value=7e-18  Score=149.22  Aligned_cols=110  Identities=20%  Similarity=0.204  Sum_probs=98.7

Q ss_pred             CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHH--cCCHHHHHHHHHCCCCcccccCCCCcH
Q 013706            3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK--NGCNEAAKLLLAHGAFIEAKANNGMTP   77 (438)
Q Consensus         3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~   77 (438)
                      .|+||||+|+..   ++.+++++|++    .|+++|.+|..|.||||+|+.  .++.+++++|++.|++++.+|..|.||
T Consensus        86 ~g~TpLh~a~~~~~~~~~eiv~~Ll~----~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~  161 (209)
T PHA02859         86 NNLSALHHYLSFNKNVEPEILKILID----SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNI  161 (209)
T ss_pred             CCCCHHHHHHHhCccccHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcH
Confidence            689999998864   47999999999    789999999999999999986  468999999999999999999999999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS  119 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a  119 (438)
                      ||.++.   ..++.+++++|+++|++++.+|..|+||++++.
T Consensus       162 Lh~~a~---~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~  200 (209)
T PHA02859        162 LYSYIL---FHSDKKIFDFLTSLGIDINETNKSGYNCYDLIK  200 (209)
T ss_pred             HHHHHH---hcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            996442   567899999999999999999999999995444

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.75  E-value=2.8e-18  Score=137.93  Aligned_cols=112  Identities=33%  Similarity=0.364  Sum_probs=99.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      .+|+||||-|+.+||.++|+.|+.    .|++.+++...||||||-||...+.+|+..|+++|+|+|++.....||||.|
T Consensus        95 ~D~YTpLHRAaYn~h~div~~ll~----~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhla  170 (228)
T KOG0512|consen   95 EDEYTPLHRAAYNGHLDIVHELLL----SGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLA  170 (228)
T ss_pred             cccccHHHHHHhcCchHHHHHHHH----ccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHh
Confidence            489999999999999999999998    7999999999999999999999999999999999999999999899999999


Q ss_pred             hhcccccCcHHHHHHHH-hCCCCCcccCCCCCccccccccC
Q 013706           82 VWYSIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHLSNG  121 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll-~~ga~~~~~d~~g~t~l~~~a~~  121 (438)
                      |.   .++....+.+|+ ..+..+..++..+.||+ ..|.+
T Consensus       171 a~---~rn~r~t~~~Ll~dryi~pg~~nn~eeta~-~iARR  207 (228)
T KOG0512|consen  171 AG---NRNSRDTLELLLHDRYIHPGLKNNLEETAF-DIARR  207 (228)
T ss_pred             hc---ccchHHHHHHHhhccccChhhhcCccchHH-HHHHH
Confidence            94   334456677766 45899999999999999 55543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.75  E-value=1.1e-17  Score=171.95  Aligned_cols=102  Identities=27%  Similarity=0.333  Sum_probs=94.0

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706            6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS   85 (438)
Q Consensus         6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   85 (438)
                      ++||.|+..|+.++++.|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+   
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~----~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~---  156 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLT----GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE---  156 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---
Confidence            46899999999999999998    78999999999999999999999999999999999999999999999999999   


Q ss_pred             cccCcHHHHHHHHhC-------CCCCcccCCCCCccc
Q 013706           86 IRSEDYATVKTLLEY-------NADCSAKDNEGKTPL  115 (438)
Q Consensus        86 ~~~~~~~~~~~Ll~~-------ga~~~~~d~~g~t~l  115 (438)
                       ..++.+++++|+.+       |++++..+..|.+|+
T Consensus       157 -~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~  192 (664)
T PTZ00322        157 -ENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPS  192 (664)
T ss_pred             -HCCcHHHHHHHHhCCCcccccCCCCCccccCCCCcc
Confidence             88999999999988       777777777777665

>PHA02946 ankyin-like protein; Provisional

Probab=99.75  E-value=5.7e-18  Score=166.58  Aligned_cols=124  Identities=26%  Similarity=0.273  Sum_probs=63.0

Q ss_pred             CcHHHHHHH--cCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            5 QTPLHVSAG--YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         5 ~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .++||.++.  .++.++|++|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~  113 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLH----RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLS  113 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHH----CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence            455555442  224455555555    45555555555555555555555555555555555555555555555555554


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcc-cCCCCCccccccccCCCchhHHHHHHhccc
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSA-KDNEGKTPLDHLSNGPGSAKLRELLLWHSE  136 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~-~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~  136 (438)
                      ..  ..+..+++++|+++|++++. .|..|.||| +++. .+..+++++|+..++
T Consensus       114 ~~--~~~~~e~v~lLl~~Gadin~~~d~~g~tpL-~aa~-~~~~~vv~~Ll~~ga  164 (446)
T PHA02946        114 GT--DDEVIERINLLVQYGAKINNSVDEEGCGPL-LACT-DPSERVFKKIMSIGF  164 (446)
T ss_pred             Hc--CCchHHHHHHHHHcCCCcccccCCCCCcHH-HHHH-CCChHHHHHHHhccc
Confidence            11  11234555555555555553 355555555 3332 234445555554443

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.75  E-value=1.3e-17  Score=175.86  Aligned_cols=173  Identities=20%  Similarity=0.273  Sum_probs=134.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEEE
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE  236 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~~  236 (438)
                      .++.++|.+....++.+++.                .+...+++|+||||||||++|+.++..+....   ......++.
T Consensus       171 ~~~~~igr~~ei~~~~~~l~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~  234 (852)
T TIGR03346       171 KLDPVIGRDEEIRRTIQVLS----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA  234 (852)
T ss_pred             CCCcCCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence            46779999986665555421                23567899999999999999999999874311   122346777


Q ss_pred             eeccccc--ccccccchHHHHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          237 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       237 ~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                      ++...++  .+|.|+.+..++.+|++.    .+.||||||+|.+...+.+.+   ...+.+.|...+..+.+.+|++||.
T Consensus       235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~~~Lk~~l~~g~i~~IgaTt~  311 (852)
T TIGR03346       235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG---AMDAGNMLKPALARGELHCIGATTL  311 (852)
T ss_pred             eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc---hhHHHHHhchhhhcCceEEEEeCcH
Confidence            7766664  468899999999998865    358999999999986443211   2345678888888999999999999


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~  352 (438)
                      +++...+..||++.+|| ..|.++.|+.++...|++....+.
T Consensus       312 ~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~  352 (852)
T TIGR03346       312 DEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERY  352 (852)
T ss_pred             HHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHh
Confidence            99987777899999999 568999999999999998776654

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.75  E-value=2.7e-17  Score=164.74  Aligned_cols=188  Identities=16%  Similarity=0.217  Sum_probs=134.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC----
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDR----  233 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~----  233 (438)
                      ..|++++|++.+++.|...+..                ....| +||+||||||||++|+++|+.++........+    
T Consensus        13 ~~f~divGQe~vv~~L~~~l~~----------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C   76 (647)
T PRK07994         13 QTFAEVVGQEHVLTALANALDL----------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC   76 (647)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc----------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence            5799999999999988876431                23345 68999999999999999999997632211122    


Q ss_pred             -------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706          234 -------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI  293 (438)
Q Consensus       234 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l  293 (438)
                                   ++++++++-      ..-..++.+++..       +..|+||||+|.|..           ...|.|
T Consensus        77 ~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NAL  139 (647)
T PRK07994         77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL  139 (647)
T ss_pred             HHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHH
Confidence                         233333210      1122344444432       336999999999986           455999


Q ss_pred             HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706          294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  371 (438)
Q Consensus       294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  371 (438)
                      |..|++  +.+++|++|+...  .+   .+.+++|+ ..++|.+++.+++.+.+++.+.++.           ..++.++
T Consensus       140 LKtLEEPp~~v~FIL~Tt~~~--kL---l~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~-----------i~~e~~a  202 (647)
T PRK07994        140 LKTLEEPPEHVKFLLATTDPQ--KL---PVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQ-----------IPFEPRA  202 (647)
T ss_pred             HHHHHcCCCCeEEEEecCCcc--cc---chHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence            999998  6677777765433  23   67889997 9999999999999999999887642           3356677


Q ss_pred             HHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          372 IAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      +..+....       .|+.|...++++++...
T Consensus       203 L~~Ia~~s-------~Gs~R~Al~lldqaia~  227 (647)
T PRK07994        203 LQLLARAA-------DGSMRDALSLTDQAIAS  227 (647)
T ss_pred             HHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence            77777654       67788888998877644

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.74  E-value=4.9e-17  Score=162.11  Aligned_cols=189  Identities=17%  Similarity=0.203  Sum_probs=136.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----  233 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~-----  233 (438)
                      ..|++++|++.+++.|..++..               .+.+..+||+||||||||++|+++|+.++........+     
T Consensus        13 ~tFddIIGQe~vv~~L~~ai~~---------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~   77 (709)
T PRK08691         13 KTFADLVGQEHVVKALQNALDE---------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ   77 (709)
T ss_pred             CCHHHHcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence            4799999999999998887441               12345689999999999999999999986532221111     


Q ss_pred             ------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          234 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       234 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                  +++++.++      +.....++.+++.+       +..|+||||+|.|..           ...+.||
T Consensus        78 sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALL  140 (709)
T PRK08691         78 SCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAML  140 (709)
T ss_pred             HHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHH
Confidence                        22232221      11223566666543       347999999998864           4458999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..|++  +.+.+|++++...  .+   .+.+++|+ ..|.|++++.+++...++..+.++.           ..++.+++
T Consensus       141 KtLEEPp~~v~fILaTtd~~--kL---~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEg-----------i~id~eAL  203 (709)
T PRK08691        141 KTLEEPPEHVKFILATTDPH--KV---PVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEK-----------IAYEPPAL  203 (709)
T ss_pred             HHHHhCCCCcEEEEEeCCcc--cc---chHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHH
Confidence            99986  5566666654322  22   56778898 8899999999999999999998753           34677888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..+++..       .|+.|.+.+++++++..
T Consensus       204 ~~Ia~~A-------~GslRdAlnLLDqaia~  227 (709)
T PRK08691        204 QLLGRAA-------AGSMRDALSLLDQAIAL  227 (709)
T ss_pred             HHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence            8888765       68889999999888764

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.74  E-value=3.4e-17  Score=161.77  Aligned_cols=189  Identities=14%  Similarity=0.202  Sum_probs=132.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------  232 (438)
                      ..|++++|++.+++.+...+..               ...+..+||+||||||||++|+.+|+.+.........      
T Consensus        13 ~~f~diiGq~~~v~~L~~~i~~---------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~   77 (546)
T PRK14957         13 QSFAEVAGQQHALNSLVHALET---------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE   77 (546)
T ss_pred             CcHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence            4799999999999888876431               1123348899999999999999999988642211111      


Q ss_pred             -----------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          233 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       233 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                 .+++++...    ..|  -..++.+++.+       ...|+||||+|.+..           ...+.||
T Consensus        78 sC~~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naLL  140 (546)
T PRK14957         78 NCVAINNNSFIDLIEIDAAS----RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNALL  140 (546)
T ss_pred             HHHHHhcCCCCceEEeeccc----ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHHH
Confidence                       222332211    111  12334444332       347999999999976           3458999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..|++  +.+++|++|+.  ...+   .+++++|+ ..++|.+++.+++...++..+.++.           ..++++++
T Consensus       141 K~LEepp~~v~fIL~Ttd--~~ki---l~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~eg-----------i~~e~~Al  203 (546)
T PRK14957        141 KTLEEPPEYVKFILATTD--YHKI---PVTILSRC-IQLHLKHISQADIKDQLKIILAKEN-----------INSDEQSL  203 (546)
T ss_pred             HHHhcCCCCceEEEEECC--hhhh---hhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99998  56667766643  2333   56689998 9999999999999999999887642           34577888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++...       .|+.|.+.+.+++++..
T Consensus       204 ~~Ia~~s-------~GdlR~alnlLek~i~~  227 (546)
T PRK14957        204 EYIAYHA-------KGSLRDALSLLDQAISF  227 (546)
T ss_pred             HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence            8877765       67889999999988754

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.74  E-value=2.2e-17  Score=171.37  Aligned_cols=210  Identities=19%  Similarity=0.238  Sum_probs=152.2

Q ss_pred             HHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE
Q 013706          157 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  236 (438)
Q Consensus       157 ~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~  236 (438)
                      ....|++++|.+...+.+.+.+..+              +....+|||+||||||||++|++|+....    ....+|+.
T Consensus       371 ~n~~~~~liG~S~~~~~~~~~~~~~--------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~----r~~~~~v~  432 (686)
T PRK15429        371 VDSEFGEIIGRSEAMYSVLKQVEMV--------------AQSDSTVLILGETGTGKELIARAIHNLSG----RNNRRMVK  432 (686)
T ss_pred             ccccccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhcC----CCCCCeEE
Confidence            3356778999998888887766544              34667999999999999999999998543    34569999


Q ss_pred             eeccccc-----ccccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC----
Q 013706          237 VQRTDLV-----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----  300 (438)
Q Consensus       237 ~~~~~~~-----~~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----  300 (438)
                      ++|..+.     ..++|+..       ......|+.+.+|+||||||+.+....|           ..|+..++++    
T Consensus       433 i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q-----------~~L~~~l~~~~~~~  501 (686)
T PRK15429        433 MNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ-----------PKLLRVLQEQEFER  501 (686)
T ss_pred             EecccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHH-----------HHHHHHHHhCCEEe
Confidence            9998653     23555421       1223567889999999999999987544           7888877653    


Q ss_pred             ---------CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhcccccccccccccccc
Q 013706          301 ---------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSS  366 (438)
Q Consensus       301 ---------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~  366 (438)
                               ++.+|++++.+....+..  -.+.|..|+ ...|.+|++..  +++..+++.++.+...+   ++..+ ..
T Consensus       502 ~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~---~~~~~-~~  577 (686)
T PRK15429        502 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARR---MGRNI-DS  577 (686)
T ss_pred             CCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHH---cCCCC-CC
Confidence                     357888876655432210  012344466 45788888874  78999999998876431   12222 35


Q ss_pred             ccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706          367 CSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      ++.+++..+..+.|      |||.++|++++++|+....
T Consensus       578 ~s~~al~~L~~y~W------PGNvrEL~~~i~~a~~~~~  610 (686)
T PRK15429        578 IPAETLRTLSNMEW------PGNVRELENVIERAVLLTR  610 (686)
T ss_pred             cCHHHHHHHHhCCC------CCcHHHHHHHHHHHHHhCC
Confidence            88999999999999      9999999999999987543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.74  E-value=8e-18  Score=155.29  Aligned_cols=121  Identities=35%  Similarity=0.393  Sum_probs=114.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      ...|||-.||..||+++|++|++    +|+|++..|..|.|.||+||..||.+++++|++.|+|+|.++..|.|+||.++
T Consensus       116 TNStPLraACfDG~leivKyLvE----~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca  191 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVE----HGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA  191 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHH----cCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhh
Confidence            45699999999999999999999    79999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW  133 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~  133 (438)
                          ..|+.+++++|+.+|+.++ +|.+|.||| ..|+..++..++++|+.
T Consensus       192 ----EsG~vdivq~Ll~~ga~i~-~d~~GmtPL-~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  192 ----ESGSVDIVQLLLKHGAKID-VDGHGMTPL-LLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             ----hcccHHHHHHHHhCCceee-ecCCCCchH-HHHhhhcchHHHHHHhc
Confidence                8999999999999999876 477799999 88888899999999986

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.74  E-value=1.5e-17  Score=126.29  Aligned_cols=89  Identities=42%  Similarity=0.582  Sum_probs=81.2

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccc
Q 013706            8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIR   87 (438)
Q Consensus         8 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   87 (438)
                      ||+||..|+++++++|++    .+.+++.    |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+    .
T Consensus         1 L~~A~~~~~~~~~~~ll~----~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~   68 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE----KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAA----E   68 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH----TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHH----H
T ss_pred             CHHHHHcCCHHHHHHHHH----CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHH----H
Confidence            799999999999999999    5666665    899999999999999999999999999999999999999999    8


Q ss_pred             cCcHHHHHHHHhCCCCCcccC
Q 013706           88 SEDYATVKTLLEYNADCSAKD  108 (438)
Q Consensus        88 ~~~~~~~~~Ll~~ga~~~~~d  108 (438)
                      .++.+++++|+++|++++.+|
T Consensus        69 ~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   69 NGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             TTHHHHHHHHHHTTT-TTSS-
T ss_pred             cCCHHHHHHHHHcCCCCCCcC
Confidence            899999999999999998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.6e-16  Score=142.08  Aligned_cols=160  Identities=18%  Similarity=0.250  Sum_probs=105.3

Q ss_pred             CcEEEEeCcccccCCCCCCCchhHH-HHHHHHHhhccC------------CCEEEEEecC---ChhHHHHhhhCcCccCC
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDG------------GKVVVIFAGY---SEPMKRVIASNEGFCRR  326 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~~~~------------~~v~vi~~~~---~~~~~~~~~~~p~l~~R  326 (438)
                      .||+||||||+++.+.+.++++.++ .+...||..+++            ..+.+|+++-   ..|.+ +   -|.|..|
T Consensus       251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD-L---iPELQGR  326 (444)
T COG1220         251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD-L---IPELQGR  326 (444)
T ss_pred             cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh-c---ChhhcCC
Confidence            4999999999999877644434444 577899999997            2467888762   33333 2   6999999


Q ss_pred             CCcceeCCCCCHHHHHHHHH----HHHhccccccccccccccccccHHHHHHHHHHHhhHh--hhccccccchHHHHHHH
Q 013706          327 VTKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK--QRREMNGGLVDPMLVNA  400 (438)
Q Consensus       327 ~~~~i~~~~~~~~e~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~~l~~~~~~a  400 (438)
                      ||..+++..++.++...||.    ..+++......+.  .+...++++++..++.-.|...  .++- .+|-|-.++++.
T Consensus       327 fPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE--~v~l~FtddaI~~iAeiA~~vN~~~ENI-GARRLhTvlErl  403 (444)
T COG1220         327 FPIRVELDALTKEDFERILTEPKASLIKQYKALLKTE--GVELEFTDDAIKRIAEIAYQVNEKTENI-GARRLHTVLERL  403 (444)
T ss_pred             CceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhc--CeeEEecHHHHHHHHHHHHHhcccccch-hHHHHHHHHHHH
Confidence            99999999999999999982    2222222111122  3456678999999998776432  2222 246676777766


Q ss_pred             HHHhhccccCCCCCh-hhhhhccHHHHHHHHHHH
Q 013706          401 RENLDLRLSFDCLDT-DELRTITLEDLEAGLKLL  433 (438)
Q Consensus       401 ~~~~~~r~~~~~~~~-~~~~~i~~~d~~~a~~~~  433 (438)
                      ...    ++++..+. .+..+|+.+=+.+-+..+
T Consensus       404 Led----iSFeA~d~~g~~v~Id~~yV~~~l~~l  433 (444)
T COG1220         404 LED----ISFEAPDMSGQKVTIDAEYVEEKLGDL  433 (444)
T ss_pred             HHH----hCccCCcCCCCeEEEcHHHHHHHHHHH
Confidence            554    34433332 234567777777666544

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.74  E-value=7.7e-17  Score=145.11  Aligned_cols=186  Identities=14%  Similarity=0.149  Sum_probs=121.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc-cCcEEEEeCcccccC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIP  276 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~  276 (438)
                      .+.+++|+||||||||++|+++++.+...+    .+++.++++.+....        ...+... ...+|||||+|.+..
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~----~~~~~i~~~~~~~~~--------~~~~~~~~~~~lLvIDdi~~l~~  104 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERG----KSAIYLPLAELAQAD--------PEVLEGLEQADLVCLDDVEAIAG  104 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEeHHHHHHhH--------HHHHhhcccCCEEEEeChhhhcC
Confidence            567899999999999999999999886433    267777777664321        2233322 337999999999875


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcccc
Q 013706          277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTE  354 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~  354 (438)
                      ...      ..+.+..++..+.+....+|++++..+.. .-...+.|.+|+  ...+.+|+|+.+++..+++.++.+.  
T Consensus       105 ~~~------~~~~L~~~l~~~~~~~~~iIits~~~~~~-~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~--  175 (226)
T TIGR03420       105 QPE------WQEALFHLYNRVREAGGRLLIAGRAAPAQ-LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR--  175 (226)
T ss_pred             ChH------HHHHHHHHHHHHHHcCCeEEEECCCChHH-CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc--
Confidence            321      01223333333322222444554443322 111126677787  4789999999999999998877543  


Q ss_pred             ccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          355 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                           +    ..++++++..+.. .|      +||.++++++++++...+..          .-.+|+.+.+.+.+
T Consensus       176 -----~----~~~~~~~l~~L~~-~~------~gn~r~L~~~l~~~~~~~~~----------~~~~i~~~~~~~~~  225 (226)
T TIGR03420       176 -----G----LQLPDEVADYLLR-HG------SRDMGSLMALLDALDRASLA----------AKRKITIPFVKEVL  225 (226)
T ss_pred             -----C----CCCCHHHHHHHHH-hc------cCCHHHHHHHHHHHHHHHHH----------hCCCCCHHHHHHHh
Confidence                 1    3467888988888 47      99999999999987754311          12357777666654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.74  E-value=1.3e-16  Score=152.69  Aligned_cols=189  Identities=20%  Similarity=0.217  Sum_probs=126.5

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++++.+++.                ....++++|+||||||||++|+++++++...+  ....++.++
T Consensus        12 ~~~~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~--~~~~~~~i~   73 (337)
T PRK12402         12 ALLEDILGQDEVVERLSRAVD----------------SPNLPHLLVQGPPGSGKTAAVRALARELYGDP--WENNFTEFN   73 (337)
T ss_pred             CcHHHhcCCHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc--cccceEEec
Confidence            358899999999999888643                12345899999999999999999999885322  123456677


Q ss_pred             cccccccc-------------ccc-------chHHHHHHHHH--------ccCcEEEEeCcccccCCCCCCCchhHHHHH
Q 013706          239 RTDLVGEF-------------VGH-------TGPKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEAL  290 (438)
Q Consensus       239 ~~~~~~~~-------------~g~-------~~~~~~~~~~~--------a~~~il~iDEid~l~~~~~~~~~~~~~~~~  290 (438)
                      ++++....             .+.       ....++.++..        +...+|||||+|.+.+..           .
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~-----------~  142 (337)
T PRK12402         74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDA-----------Q  142 (337)
T ss_pred             hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHH-----------H
Confidence            66543221             111       01122222222        234799999999886422           2


Q ss_pred             HHHHhhccC---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccc
Q 013706          291 EEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC  367 (438)
Q Consensus       291 ~~ll~~~~~---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~  367 (438)
                      +.|...++.   ...+|++++++.   .+   .++|++|+ ..+.|++|+.+++..+++..+.+..           ..+
T Consensus       143 ~~L~~~le~~~~~~~~Il~~~~~~---~~---~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~-----------~~~  204 (337)
T PRK12402        143 QALRRIMEQYSRTCRFIIATRQPS---KL---IPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEG-----------VDY  204 (337)
T ss_pred             HHHHHHHHhccCCCeEEEEeCChh---hC---chhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence            455555543   333444443332   22   57788897 7899999999999999999887642           336


Q ss_pred             cHHHHHHHHHHHhhHhhhccccccchHHHHHHHH
Q 013706          368 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR  401 (438)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~  401 (438)
                      +++++..++...       +||.|.+.+.++.+.
T Consensus       205 ~~~al~~l~~~~-------~gdlr~l~~~l~~~~  231 (337)
T PRK12402        205 DDDGLELIAYYA-------GGDLRKAILTLQTAA  231 (337)
T ss_pred             CHHHHHHHHHHc-------CCCHHHHHHHHHHHH
Confidence            788888888765       678888888777654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.73  E-value=1.9e-17  Score=138.21  Aligned_cols=123  Identities=26%  Similarity=0.359  Sum_probs=112.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+|||.||+.+||+.+|++||+    .|++++...+...|+|++|++.|..++|++|+.++.|+|.-|-+|-|||.||
T Consensus       158 e~GfTpLiWAaa~G~i~vV~fLL~----~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyA  233 (296)
T KOG0502|consen  158 EFGFTPLIWAAAKGHIPVVQFLLN----SGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYA  233 (296)
T ss_pred             ccCchHhHHHHhcCchHHHHHHHH----cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeee
Confidence            469999999999999999999999    7999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW  133 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~  133 (438)
                      +    +.++.+||+.|++.|++++..+..|+++++.+.. .++..+.+.+.+
T Consensus       234 v----rgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAVa-lGyr~Vqqvie~  280 (296)
T KOG0502|consen  234 V----RGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVA-LGYRIVQQVIEK  280 (296)
T ss_pred             e----cCChHHHHHHHHhcCCCcccccccCCcHHHHHHH-hhhHHHHHHHHH
Confidence            9    8999999999999999999999999999955544 455555555543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.73  E-value=1.3e-16  Score=166.10  Aligned_cols=219  Identities=21%  Similarity=0.289  Sum_probs=150.2

Q ss_pred             HHHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706          155 DELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  233 (438)
Q Consensus       155 ~~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~  233 (438)
                      ..+...+ ..++|++.+++.+.+.+...       ..+......+..++||+||||||||.+|+++|+.++.       +
T Consensus       446 ~~l~~~l~~~v~GQ~~ai~~l~~~i~~~-------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-------~  511 (731)
T TIGR02639       446 KNLEKNLKAKIFGQDEAIDSLVSSIKRS-------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-------H  511 (731)
T ss_pred             HHHHHHHhcceeCcHHHHHHHHHHHHHH-------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-------C
Confidence            3344444 35789998888877764432       2232222223446899999999999999999998854       6


Q ss_pred             EEEeecccccc---------c---ccccc-hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC
Q 013706          234 VTEVQRTDLVG---------E---FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG  300 (438)
Q Consensus       234 ~~~~~~~~~~~---------~---~~g~~-~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~  300 (438)
                      ++.++.+++..         .   |+|.. ...+.+.++....+||||||+|++.+           .+.+.|++.||++
T Consensus       512 ~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~-----------~~~~~Ll~~ld~g  580 (731)
T TIGR02639       512 LERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP-----------DIYNILLQVMDYA  580 (731)
T ss_pred             eEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH-----------HHHHHHHHhhccC
Confidence            67776655322         1   34432 23456667777789999999999987           5569999999864


Q ss_pred             -------------CEEEEEecCChhHH-------------------HHh-hhCcCccCCCCcceeCCCCCHHHHHHHHHH
Q 013706          301 -------------KVVVIFAGYSEPMK-------------------RVI-ASNEGFCRRVTKFFHFNDFNSEELAKILHI  347 (438)
Q Consensus       301 -------------~v~vi~~~~~~~~~-------------------~~~-~~~p~l~~R~~~~i~~~~~~~~e~~~il~~  347 (438)
                                   +.++|++++...-.                   .+. .-.|+|+.||+.+|.|.+++.+++.+|++.
T Consensus       581 ~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~  660 (731)
T TIGR02639       581 TLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQK  660 (731)
T ss_pred             eeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHH
Confidence                         34577766431100                   000 125899999999999999999999999999


Q ss_pred             HHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          348 KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       348 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      .+.+...+....+  +...++++++..++...+.    ...++|.++..+++.....
T Consensus       661 ~L~~l~~~l~~~~--~~l~i~~~a~~~La~~~~~----~~~GaR~l~r~i~~~~~~~  711 (731)
T TIGR02639       661 FVDELSKQLNEKN--IKLELTDDAKKYLAEKGYD----EEFGARPLARVIQEEIKKP  711 (731)
T ss_pred             HHHHHHHHHHhCC--CeEEeCHHHHHHHHHhCCC----cccCchHHHHHHHHHhHHH
Confidence            9987654332222  3456788999999886431    1345788999888877654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.73  E-value=1.2e-17  Score=167.78  Aligned_cols=129  Identities=31%  Similarity=0.389  Sum_probs=113.4

Q ss_pred             CCCCcHHHHHH--HcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcC--CHHHHHHHHHCCCCcccccCCCCcH
Q 013706            2 QMAQTPLHVSA--GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG--CNEAAKLLLAHGAFIEAKANNGMTP   77 (438)
Q Consensus         2 ~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~   77 (438)
                      ..|.||||+|+  ..|+.+++++|++    .|++++..+..|.||||+|+..|  +.+++++|+++|++++.++..|.||
T Consensus       104 ~~g~tpL~~A~~~~~~~~~iv~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tp  179 (480)
T PHA03100        104 NNGITPLLYAISKKSNSYSIVEYLLD----NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTP  179 (480)
T ss_pred             CCCCchhhHHHhcccChHHHHHHHHH----cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCH
Confidence            36899999999  9999999999998    68889999999999999999999  8999999999999999999999999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCC------CccccccccCCCc--hhHHHHHHhccchHH
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG------KTPLDHLSNGPGS--AKLRELLLWHSEEQR  139 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g------~t~l~~~a~~~~~--~~~~~lL~~~~~~~~  139 (438)
                      ||+|+    ..|+.+++++|+++|++++..+..|      .||+ +.++..+.  .+++++|+..|++..
T Consensus       180 L~~A~----~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l-~~a~~~~~~~~~iv~~Ll~~g~din  244 (480)
T PHA03100        180 LHIAV----EKGNIDVIKFLLDNGADINAGDIETLLFTIFETPL-HIAACYNEITLEVVNYLLSYGVPIN  244 (480)
T ss_pred             HHHHH----HhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHH-HHHHHhCcCcHHHHHHHHHcCCCCC
Confidence            99999    7889999999999999999998888      8999 55555666  888889988876644

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.73  E-value=2e-16  Score=158.71  Aligned_cols=189  Identities=17%  Similarity=0.240  Sum_probs=135.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  231 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-------  231 (438)
                      ..|++++|++.+.+.++..+..               ...+..+||+||+|||||++|+.+|+.+........       
T Consensus        13 ~~f~~viGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~   77 (559)
T PRK05563         13 QTFEDVVGQEHITKTLKNAIKQ---------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE   77 (559)
T ss_pred             CcHHhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence            5799999999999998887442               112334789999999999999999998864322111       


Q ss_pred             ----------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          232 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       232 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                ..++++++++      +.....++.+.+.+       ...|+||||+|.|..           ...+.|+
T Consensus        78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLL  140 (559)
T PRK05563         78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALL  140 (559)
T ss_pred             HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence                      1233443321      12334456665543       347999999999975           4568999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..+++  ..+++|++|+..  ..+   .|++++|+ ..+.|++|+.+++...+...+.+..           ..++++++
T Consensus       141 KtLEepp~~~ifIlatt~~--~ki---~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~eg-----------i~i~~~al  203 (559)
T PRK05563        141 KTLEEPPAHVIFILATTEP--HKI---PATILSRC-QRFDFKRISVEDIVERLKYILDKEG-----------IEYEDEAL  203 (559)
T ss_pred             HHhcCCCCCeEEEEEeCCh--hhC---cHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  456667665432  333   67889998 7899999999999999999887642           23566777


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++...       .|+.|++.+.++++...
T Consensus       204 ~~ia~~s-------~G~~R~al~~Ldq~~~~  227 (559)
T PRK05563        204 RLIARAA-------EGGMRDALSILDQAISF  227 (559)
T ss_pred             HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence            7777754       57788888998887654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.73  E-value=2.3e-17  Score=165.32  Aligned_cols=133  Identities=32%  Similarity=0.409  Sum_probs=116.5

Q ss_pred             CCCCcHHHHHHHcC---CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcC-CHHHHHHHHHCCCCcccccCCCCcH
Q 013706            2 QMAQTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG-CNEAAKLLLAHGAFIEAKANNGMTP   77 (438)
Q Consensus         2 ~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~   77 (438)
                      ..|.||||+|+..+   +.+++++|++    .|+++|.+|..|+||||+|+..| +.+++++|+++|++++.+|..|.||
T Consensus        45 ~~g~t~Lh~a~~~~~~~~~~iv~~Ll~----~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tp  120 (471)
T PHA03095         45 EYGKTPLHLYLHYSSEKVKDIVRLLLE----AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTP  120 (471)
T ss_pred             CCCCCHHHHHHHhcCCChHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            36899999999998   9999999999    79999999999999999999999 5999999999999999999999999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccC-CCchhHHHHHHhccchHHH
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG-PGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~-~~~~~~~~lL~~~~~~~~~  140 (438)
                      ||+|+..  ..++.+++++|+++|++++..|..|.||||.+... ....+++++|+..+.+...
T Consensus       121 Lh~a~~~--~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~  182 (471)
T PHA03095        121 LHVYLSG--FNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA  182 (471)
T ss_pred             HHHHhhC--CcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc
Confidence            9999821  34678999999999999999999999999554433 3357889999888765443

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.73  E-value=1.5e-16  Score=156.99  Aligned_cols=187  Identities=18%  Similarity=0.246  Sum_probs=131.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCc--------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGIL--------  229 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~--------  229 (438)
                      ..|++++|++.+++.|..++..                ...+| +||+||||||||++|+++|+.+...+..        
T Consensus        11 ~~~~dvvGq~~v~~~L~~~i~~----------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~   74 (504)
T PRK14963         11 ITFDEVVGQEHVKEVLLAALRQ----------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE   74 (504)
T ss_pred             CCHHHhcChHHHHHHHHHHHHc----------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence            4689999999999999887442                23345 5999999999999999999998743211        


Q ss_pred             --------CCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          230 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       230 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                              ....++++++++-      .....++.+.+.+       ...|+||||+|.+..           ..++.|+
T Consensus        75 sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~a~naLL  137 (504)
T PRK14963         75 SCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------SAFNALL  137 (504)
T ss_pred             hhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------HHHHHHH
Confidence                    1122444443311      1122344443322       347999999998753           4568999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..+++  ..+++|++++..  ..+   .+.+++|+ ..++|++|+.+++...++..+.+..           ..++++++
T Consensus       138 k~LEep~~~t~~Il~t~~~--~kl---~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~eg-----------i~i~~~Al  200 (504)
T PRK14963        138 KTLEEPPEHVIFILATTEP--EKM---PPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEG-----------REAEPEAL  200 (504)
T ss_pred             HHHHhCCCCEEEEEEcCCh--hhC---ChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  455666655432  222   67888898 6899999999999999999988753           23577888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNARE  402 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~  402 (438)
                      ..++...       .|+.|.+.+.++++..
T Consensus       201 ~~ia~~s-------~GdlR~aln~Lekl~~  223 (504)
T PRK14963        201 QLVARLA-------DGAMRDAESLLERLLA  223 (504)
T ss_pred             HHHHHHc-------CCCHHHHHHHHHHHHh
Confidence            8888765       6788889999888754

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.73  E-value=2.5e-16  Score=157.88  Aligned_cols=223  Identities=18%  Similarity=0.174  Sum_probs=146.8

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCce-EEecCCCCCHHHHHHHHHHHHHHc---CCcCCCCEEEe
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHM-AFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEV  237 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~GppGtGKT~la~~la~~l~~~---~~~~~~~~~~~  237 (438)
                      +.|.|.+.-.++|..++.....            ...+.++ +++||||||||++++.+.+++...   .......++.+
T Consensus       755 D~LPhREeEIeeLasfL~paIk------------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI  822 (1164)
T PTZ00112        755 KYLPCREKEIKEVHGFLESGIK------------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI  822 (1164)
T ss_pred             CcCCChHHHHHHHHHHHHHHHh------------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence            5678888888888777554321            1234455 599999999999999999888431   11222456788


Q ss_pred             eccccc----------cccccc-------chHHHHHHHHHc----c-CcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706          238 QRTDLV----------GEFVGH-------TGPKTRRRIKEA----E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMS  295 (438)
Q Consensus       238 ~~~~~~----------~~~~g~-------~~~~~~~~~~~a----~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~  295 (438)
                      +|..+.          .++.|.       +...+..+|...    . ..||+|||||.|....|        .++..|+.
T Consensus       823 NCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q--------DVLYnLFR  894 (1164)
T PTZ00112        823 NGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ--------KVLFTLFD  894 (1164)
T ss_pred             eCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH--------HHHHHHHH
Confidence            885422          112222       223344555543    1 25999999999987544        55555555


Q ss_pred             hcc--CCCEEEEEecCChhHHHHhhhCcCccCCCC-cceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          296 VMD--GGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       296 ~~~--~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~-~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ...  +..++||++++.-.+...  .+|.+++||. ..|.|++|+.+|+.+||+..+....           ..++++++
T Consensus       895 ~~~~s~SKLiLIGISNdlDLper--LdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-----------gVLdDdAI  961 (1164)
T PTZ00112        895 WPTKINSKLVLIAISNTMDLPER--LIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK-----------EIIDHTAI  961 (1164)
T ss_pred             HhhccCCeEEEEEecCchhcchh--hhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC-----------CCCCHHHH
Confidence            433  467888888764333222  2788999994 4699999999999999999887521           23667777


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      ..++....    ...|++|....++++|.+.+            +...|+.+|+.+|+..+
T Consensus       962 ELIArkVA----q~SGDARKALDILRrAgEik------------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112        962 QLCARKVA----NVSGDIRKALQICRKAFENK------------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred             HHHHHhhh----hcCCHHHHHHHHHHHHHhhc------------CCCccCHHHHHHHHHHH
Confidence            66666321    12577888888888887642            11378899999998766

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.73  E-value=1.2e-17  Score=176.80  Aligned_cols=134  Identities=24%  Similarity=0.405  Sum_probs=109.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW   83 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   83 (438)
                      +.++||.||..|+.++++.|++    .|+++|..|..|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+.
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~----~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLK----AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            4678888888888888888887    677888888888888888888888888888888888888888888888886652


Q ss_pred             ---------------------------cccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706           84 ---------------------------YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE  136 (438)
Q Consensus        84 ---------------------------~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~  136 (438)
                                                 ++...|+.++++.|+++|++++.+|.+|+||| |.|+..++.+++++|+..|+
T Consensus       601 ~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpL-h~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        601 AKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATAL-QVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             hCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHCCcHHHHHHHHHcCC
Confidence                                       11256777888889999999999999999999 66666789999999999998


Q ss_pred             hHHHHH
Q 013706          137 EQRKRR  142 (438)
Q Consensus       137 ~~~~~~  142 (438)
                      +....+
T Consensus       680 dv~~~~  685 (823)
T PLN03192        680 DVDKAN  685 (823)
T ss_pred             CCCCCC
Confidence            765543

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.73  E-value=1.8e-16  Score=158.57  Aligned_cols=189  Identities=17%  Similarity=0.189  Sum_probs=133.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc-----CCC-
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL-----PTD-  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~-----~~~-  232 (438)
                      ..|++++|++.+.+.|..++..-               ..+..+||+||+|||||++|+++|+.++..+..     ... 
T Consensus        13 ~~f~dviGQe~vv~~L~~~l~~~---------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p   77 (618)
T PRK14951         13 RSFSEMVGQEHVVQALTNALTQQ---------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP   77 (618)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence            57999999999999888874411               123346999999999999999999999753210     001 


Q ss_pred             ----------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHH
Q 013706          233 ----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA  289 (438)
Q Consensus       233 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~  289 (438)
                                      .++++++++-      ..-..++++++.+       +..|+||||+|.|..           ..
T Consensus        78 Cg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a  140 (618)
T PRK14951         78 CGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TA  140 (618)
T ss_pred             CCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HH
Confidence                            1233332210      1223456666543       247999999999986           34


Q ss_pred             HHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccc
Q 013706          290 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC  367 (438)
Q Consensus       290 ~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~  367 (438)
                      .|.|+..+++  +.+++|++|+...  .+   .+.+++|+ ..++|.+++.+++.+.++..+.++.           ..+
T Consensus       141 ~NaLLKtLEEPP~~~~fIL~Ttd~~--ki---l~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~eg-----------i~i  203 (618)
T PRK14951        141 FNAMLKTLEEPPEYLKFVLATTDPQ--KV---PVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAEN-----------VPA  203 (618)
T ss_pred             HHHHHHhcccCCCCeEEEEEECCch--hh---hHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence            5899999987  5566666654322  22   45688898 9999999999999999999887653           345


Q ss_pred             cHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          368 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      +++++..++...       .|+.|.+.++++++...
T Consensus       204 e~~AL~~La~~s-------~GslR~al~lLdq~ia~  232 (618)
T PRK14951        204 EPQALRLLARAA-------RGSMRDALSLTDQAIAF  232 (618)
T ss_pred             CHHHHHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence            678888888755       67888888988877654

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.73  E-value=7.3e-17  Score=160.90  Aligned_cols=188  Identities=19%  Similarity=0.200  Sum_probs=133.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcC-------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILP-------  230 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~-------  230 (438)
                      ..|++++|++.+++.|+.++.                .....| +||+||+|||||++|+++|+.++......       
T Consensus        10 ~~f~eivGq~~i~~~L~~~i~----------------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C   73 (584)
T PRK14952         10 ATFAEVVGQEHVTEPLSSALD----------------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC   73 (584)
T ss_pred             CcHHHhcCcHHHHHHHHHHHH----------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence            479999999999999888743                224456 69999999999999999999887421111       


Q ss_pred             ------------CCCEEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHH
Q 013706          231 ------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALE  291 (438)
Q Consensus       231 ------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~  291 (438)
                                  ...++++++++..      .-..++++.+.       +...|+||||+|.|..           .+.|
T Consensus        74 ~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~N  136 (584)
T PRK14952         74 ESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFN  136 (584)
T ss_pred             HHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHH
Confidence                        1123333332210      12233433332       2457999999999976           3559


Q ss_pred             HHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccH
Q 013706          292 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  369 (438)
Q Consensus       292 ~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~  369 (438)
                      .||..|++  ..+++|++|+..  ..+   .+++++|+ .+++|..++.+++.+.+...+.++.           ..+++
T Consensus       137 ALLK~LEEpp~~~~fIL~tte~--~kl---l~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~eg-----------i~i~~  199 (584)
T PRK14952        137 ALLKIVEEPPEHLIFIFATTEP--EKV---LPTIRSRT-HHYPFRLLPPRTMRALIARICEQEG-----------VVVDD  199 (584)
T ss_pred             HHHHHHhcCCCCeEEEEEeCCh--Hhh---HHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCH
Confidence            99999998  677777776443  233   67889996 8999999999999999999888753           33566


Q ss_pred             HHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          370 DAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      +++..++...       .|+.|.+.++++++...
T Consensus       200 ~al~~Ia~~s-------~GdlR~aln~Ldql~~~  226 (584)
T PRK14952        200 AVYPLVIRAG-------GGSPRDTLSVLDQLLAG  226 (584)
T ss_pred             HHHHHHHHHc-------CCCHHHHHHHHHHHHhc
Confidence            7777776644       67788899999887643

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.72  E-value=3.2e-17  Score=139.56  Aligned_cols=104  Identities=23%  Similarity=0.275  Sum_probs=94.7

Q ss_pred             CCCCcHHHHHHHcCCHHH---HHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCc
Q 013706            2 QMAQTPLHVSAGYNKAEI---VKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMT   76 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~---v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t   76 (438)
                      ..|+||||+||..|+.+.   +++|++    .|+++|.+| ..|+||||+|+..|+.+++++|+. .|++++.++..|.|
T Consensus        55 ~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~----~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~t  130 (166)
T PHA02743         55 HHGRQCTHMVAWYDRANAVMKIELLVN----MGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHET  130 (166)
T ss_pred             CCCCcHHHHHHHhCccCHHHHHHHHHH----cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCC
Confidence            369999999999998654   789998    789999998 589999999999999999999995 89999999999999


Q ss_pred             HHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCc
Q 013706           77 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT  113 (438)
Q Consensus        77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t  113 (438)
                      |||+|+    ..++.+++++|+.+|++++.++..|..
T Consensus       131 pL~~A~----~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743        131 AYHIAY----KMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             HHHHHH----HcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            999999    889999999999999999988877643

>PHA03095 ankyrin-like protein; Provisional

Probab=99.72  E-value=2.7e-17  Score=164.81  Aligned_cols=127  Identities=21%  Similarity=0.218  Sum_probs=60.4

Q ss_pred             CCCcHHHHHHHcC--CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHc--CCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706            3 MAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN--GCNEAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         3 ~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      .|.||||+|+..+  +.+++++|++    .|++++..|..|+||||+++..  ++.++++.|++.|++++.+|..|.|||
T Consensus       151 ~g~tpL~~a~~~~~~~~~iv~~Ll~----~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpL  226 (471)
T PHA03095        151 YGMTPLAVLLKSRNANVELLRLLID----AGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL  226 (471)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence            3555555555433  3455555555    3444444444555555555442  344455555555555555555555555


Q ss_pred             HHHhhcccccCc--HHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchH
Q 013706           79 HLSVWYSIRSED--YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ  138 (438)
Q Consensus        79 ~~A~~~~~~~~~--~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~  138 (438)
                      |+|+    ..++  ..++..|+..|++++..|..|+||| |.|+..++.+++++|+..|++.
T Consensus       227 h~Aa----~~~~~~~~~v~~ll~~g~din~~d~~g~TpL-h~A~~~~~~~~v~~LL~~gad~  283 (471)
T PHA03095        227 HSMA----TGSSCKRSLVLPLLIAGISINARNRYGQTPL-HYAAVFNNPRACRRLIALGADI  283 (471)
T ss_pred             HHHH----hcCCchHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCC
Confidence            5554    2222  2344444445555555555555555 3333344444444444444443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.72  E-value=9.7e-18  Score=157.65  Aligned_cols=131  Identities=31%  Similarity=0.377  Sum_probs=119.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-----------
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-----------   71 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-----------   71 (438)
                      +|.|+||-||.-.+.+||++|++    .|++||..|..||||||.|+..||..++++|+++|+++-..+           
T Consensus        72 DglTalhq~~id~~~e~v~~l~e----~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e  147 (527)
T KOG0505|consen   72 DGLTALHQACIDDNLEMVKFLVE----NGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAE  147 (527)
T ss_pred             ccchhHHHHHhcccHHHHHHHHH----hcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcccccc
Confidence            79999999999999999999999    799999999999999999999999999999999998643322           


Q ss_pred             ------------------------------------------------CCCCcHHHHHhhcccccCcHHHHHHHHhCCCC
Q 013706           72 ------------------------------------------------NNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD  103 (438)
Q Consensus        72 ------------------------------------------------~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~  103 (438)
                                                                      ..|.|.||.|+    .+|..++..+|+++|.+
T Consensus       148 ~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAa----a~Gy~e~~~lLl~ag~~  223 (527)
T KOG0505|consen  148 DEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAA----ANGYTEVAALLLQAGYS  223 (527)
T ss_pred             CcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHH----hhhHHHHHHHHHHhccC
Confidence                                                            26899999999    89999999999999999


Q ss_pred             CcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706          104 CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus       104 ~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                      ++.+|.+||||| |+++.++..+++++|..++++.....
T Consensus       224 ~~~~D~dgWtPl-HAAA~Wg~~~~~elL~~~ga~~d~~t  261 (527)
T KOG0505|consen  224 VNIKDYDGWTPL-HAAAHWGQEDACELLVEHGADMDAKT  261 (527)
T ss_pred             cccccccCCCcc-cHHHHhhhHhHHHHHHHhhcccchhh
Confidence            999999999999 77777899999999999888766654

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=99.72  E-value=5.9e-17  Score=145.76  Aligned_cols=208  Identities=16%  Similarity=0.229  Sum_probs=150.0

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|+.+++.+...+.+.+....+              +.-..++|+.|++||||.++||+.+.    .+.....||+.+
T Consensus       200 ~~~F~~~v~~S~~mk~~v~qA~k~--------------AmlDAPLLI~GeTGTGKdLlAkaCH~----~S~R~~~pFlal  261 (511)
T COG3283         200 VSGFEQIVAVSPKMKHVVEQAQKL--------------AMLDAPLLITGETGTGKDLLAKACHL----ASPRHSKPFLAL  261 (511)
T ss_pred             ccchHHHhhccHHHHHHHHHHHHh--------------hccCCCeEEecCCCchHHHHHHHHhh----cCcccCCCeeEe
Confidence            346888888887766666554433              22346799999999999999999987    566677899999


Q ss_pred             eccccc-----ccccccch--HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC----------
Q 013706          238 QRTDLV-----GEFVGHTG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------  300 (438)
Q Consensus       238 ~~~~~~-----~~~~g~~~--~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------  300 (438)
                      +|+.+.     ++++|+..  .-....|+.|.+|.+|+|||..+++.-           ..+||+++.+|          
T Consensus       262 NCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~l-----------QaKLLRFL~DGtFRRVGee~E  330 (511)
T COG3283         262 NCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRL-----------QAKLLRFLNDGTFRRVGEDHE  330 (511)
T ss_pred             ecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHH-----------HHHHHHHhcCCceeecCCcce
Confidence            998754     45777755  445578999999999999999999844           48999999863          


Q ss_pred             ---CEEEEEecCChhHHHHhhh--CcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          301 ---KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       301 ---~v~vi~~~~~~~~~~~~~~--~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                         +|.||++|..+-.+.....  ...|..|+ -..+++|++-.  +++..+.+.++.+....   .+ ...+.++.+.+
T Consensus       331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~e---lg-~p~pkl~~~~~  406 (511)
T COG3283         331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDE---LG-VPRPKLAADLL  406 (511)
T ss_pred             EEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHH---hC-CCCCccCHHHH
Confidence               4789999876655433111  01222344 22444555442  66777777777665431   12 23467899999


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ..+.++.|      +||.|++.|++.+|....
T Consensus       407 ~~L~~y~W------pGNVRqL~N~iyRA~s~~  432 (511)
T COG3283         407 TVLTRYAW------PGNVRQLKNAIYRALTLL  432 (511)
T ss_pred             HHHHHcCC------CccHHHHHHHHHHHHHHh
Confidence            99999999      999999999999998753

>PHA02798 ankyrin-like protein; Provisional

Probab=99.72  E-value=3e-17  Score=164.60  Aligned_cols=135  Identities=23%  Similarity=0.215  Sum_probs=96.1

Q ss_pred             CCCcHHHHHHHcC---CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC---HHHHHHHHHCCCCccccc-CCCC
Q 013706            3 MAQTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC---NEAAKLLLAHGAFIEAKA-NNGM   75 (438)
Q Consensus         3 ~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~-~~g~   75 (438)
                      .|+||||+|+..+   +.+++++|++    .|++++..|..|.||||+|+..++   .+++++|+++|++++.++ ..|.
T Consensus       108 ~G~TpLh~a~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~  183 (489)
T PHA02798        108 DGETPLYCLLSNGYINNLEILLFMIE----NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKY  183 (489)
T ss_pred             CcCcHHHHHHHcCCcChHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCC
Confidence            5777777777764   6777777777    577777777777777777777776   777777777777777764 4567


Q ss_pred             cHHHHHhhcccccCcHHHHHHHHhCCCC---------------------------------------CcccCCCCCcccc
Q 013706           76 TPLHLSVWYSIRSEDYATVKTLLEYNAD---------------------------------------CSAKDNEGKTPLD  116 (438)
Q Consensus        76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~---------------------------------------~~~~d~~g~t~l~  116 (438)
                      ||||.++..+...++.+++++|+++|++                                       ++.+|..|+||| 
T Consensus       184 t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL-  262 (489)
T PHA02798        184 DTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPL-  262 (489)
T ss_pred             cHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHH-
Confidence            7777766432233456666666665543                                       444667899999 


Q ss_pred             ccccCCCchhHHHHHHhccchHHHHH
Q 013706          117 HLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus       117 ~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                      |.|+..++.+++++|+..|++.....
T Consensus       263 ~~A~~~~~~~~v~~LL~~GAdin~~d  288 (489)
T PHA02798        263 YYSVSHNNRKIFEYLLQLGGDINIIT  288 (489)
T ss_pred             HHHHHcCcHHHHHHHHHcCCcccccC
Confidence            66666788899999999998866543

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.72  E-value=1.4e-16  Score=158.16  Aligned_cols=187  Identities=19%  Similarity=0.252  Sum_probs=128.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------  232 (438)
                      ..|++++|++.+++.|...+..               .+-+..+||+||||||||++|+++|+.+.........      
T Consensus        13 ~sf~dIiGQe~v~~~L~~ai~~---------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~   77 (624)
T PRK14959         13 QTFAEVAGQETVKAILSRAAQE---------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE   77 (624)
T ss_pred             CCHHHhcCCHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence            4689999999999988886431               1235678999999999999999999988642211111      


Q ss_pred             -----------CEEEeecccccccccccchHHHHHH---HHH----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          233 -----------RVTEVQRTDLVGEFVGHTGPKTRRR---IKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       233 -----------~~~~~~~~~~~~~~~g~~~~~~~~~---~~~----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                 .++++++..-    .  .-..++.+   +..    ....||||||+|.|..           ..++.|+
T Consensus        78 sC~~i~~g~hpDv~eId~a~~----~--~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naLL  140 (624)
T PRK14959         78 QCRKVTQGMHVDVVEIDGASN----R--GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNALL  140 (624)
T ss_pred             HHHHHhcCCCCceEEEecccc----c--CHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHHH
Confidence                       1333332210    0  11222332   221    2347999999999975           4458999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..|++  ..+++|++++....  +   .+.+++|+ .+|+|++++.+++..+++..+.++.           ..++.+++
T Consensus       141 k~LEEP~~~~ifILaTt~~~k--l---l~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~eg-----------i~id~eal  203 (624)
T PRK14959        141 KTLEEPPARVTFVLATTEPHK--F---PVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREG-----------VDYDPAAV  203 (624)
T ss_pred             HHhhccCCCEEEEEecCChhh--h---hHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99986  56777776554322  2   45678898 7899999999999999998887642           34677787


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAR  401 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~  401 (438)
                      ..++...       .|+.|.+.++++++.
T Consensus       204 ~lIA~~s-------~GdlR~Al~lLeqll  225 (624)
T PRK14959        204 RLIARRA-------AGSVRDSMSLLGQVL  225 (624)
T ss_pred             HHHHHHc-------CCCHHHHHHHHHHHH
Confidence            7777754       577788888887654

>PRK04195 replication factor C large subunit; Provisional

Probab=99.72  E-value=1.7e-16  Score=157.87  Aligned_cols=185  Identities=19%  Similarity=0.266  Sum_probs=127.3

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++++|++.+++++.+++....            ...+++++||+||||||||++|+++|++++.       .+++++
T Consensus        11 ~~l~dlvg~~~~~~~l~~~l~~~~------------~g~~~~~lLL~GppG~GKTtla~ala~el~~-------~~ieln   71 (482)
T PRK04195         11 KTLSDVVGNEKAKEQLREWIESWL------------KGKPKKALLLYGPPGVGKTSLAHALANDYGW-------EVIELN   71 (482)
T ss_pred             CCHHHhcCCHHHHHHHHHHHHHHh------------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CEEEEc
Confidence            468899999999999999865432            1124678999999999999999999998864       778888


Q ss_pred             cccccccccccchHHHHHHHHH---------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKE---------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~---------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      +++....      ..+...+..         ....+|+|||+|.+.....       ...++.|+..++.....+|++++
T Consensus        72 asd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~~~~~iIli~n  138 (482)
T PRK04195         72 ASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKKAKQPIILTAN  138 (482)
T ss_pred             ccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHcCCCCEEEecc
Confidence            7764321      112222211         1357999999999976321       13346677777765444444433


Q ss_pred             ChhHHHHhhhCc-CccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706          310 SEPMKRVIASNE-GFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  388 (438)
Q Consensus       310 ~~~~~~~~~~~p-~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (438)
                      ... . +   .+ .+++|+ ..|.|++|+.+++..+++..+.++.           ..++++++..++...       .|
T Consensus       139 ~~~-~-~---~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~eg-----------i~i~~eaL~~Ia~~s-------~G  194 (482)
T PRK04195        139 DPY-D-P---SLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEG-----------IECDDEALKEIAERS-------GG  194 (482)
T ss_pred             Ccc-c-c---chhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------CC
Confidence            221 1 1   33 566665 8899999999999999999987653           346778888888765       45


Q ss_pred             cccchHHHHHH
Q 013706          389 NGGLVDPMLVN  399 (438)
Q Consensus       389 n~~~l~~~~~~  399 (438)
                      +.|.+.+.++.
T Consensus       195 DlR~ain~Lq~  205 (482)
T PRK04195        195 DLRSAINDLQA  205 (482)
T ss_pred             CHHHHHHHHHH
Confidence            55555555554

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.72  E-value=9.9e-17  Score=165.91  Aligned_cols=186  Identities=19%  Similarity=0.212  Sum_probs=131.3

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcC-------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILP-------  230 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~-------  230 (438)
                      ..|++|+|++.+++.|...+..                ....| +||+||+|||||++|++||+.|.+.....       
T Consensus        12 ~~f~eiiGqe~v~~~L~~~i~~----------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C   75 (824)
T PRK07764         12 ATFAEVIGQEHVTEPLSTALDS----------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC   75 (824)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence            4799999999999998887441                23345 79999999999999999999996421110       


Q ss_pred             ------------CCCEEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHH
Q 013706          231 ------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALE  291 (438)
Q Consensus       231 ------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~  291 (438)
                                  ...+++++..+..      .-..++.+.+.       .+..|+||||+|.|..           ...|
T Consensus        76 ~sC~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~N  138 (824)
T PRK07764         76 DSCVALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFN  138 (824)
T ss_pred             HHHHHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHH
Confidence                        1123333322110      11233333322       2447999999999986           4459


Q ss_pred             HHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccH
Q 013706          292 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  369 (438)
Q Consensus       292 ~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~  369 (438)
                      .||..|++  ..++||++++..  +.+   .+.|++|+ .+++|..++.+++.++|+..++++.           ..++.
T Consensus       139 aLLK~LEEpP~~~~fIl~tt~~--~kL---l~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EG-----------v~id~  201 (824)
T PRK07764        139 ALLKIVEEPPEHLKFIFATTEP--DKV---IGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEG-----------VPVEP  201 (824)
T ss_pred             HHHHHHhCCCCCeEEEEEeCCh--hhh---hHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCH
Confidence            99999997  667777776433  333   56789998 8999999999999999999887753           33567


Q ss_pred             HHHHHHHHHHhhHhhhccccccchHHHHHHHH
Q 013706          370 DAIAALIEKETTEKQRREMNGGLVDPMLVNAR  401 (438)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~  401 (438)
                      +++..++...       .|+.|.+.+++++.+
T Consensus       202 eal~lLa~~s-------gGdlR~Al~eLEKLi  226 (824)
T PRK07764        202 GVLPLVIRAG-------GGSVRDSLSVLDQLL  226 (824)
T ss_pred             HHHHHHHHHc-------CCCHHHHHHHHHHHH
Confidence            7777777655       577788888888766

>PHA02795 ankyrin-like protein; Provisional

Probab=99.71  E-value=3.6e-17  Score=156.04  Aligned_cols=125  Identities=19%  Similarity=0.110  Sum_probs=78.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCCcc-cccc-----cCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706            5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVE-LEAQ-----NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~-----d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      .||||.|+..|+.+++++|+++    |++ .+..     +..+.|++|.|+..++.+++++|+++|+++|.+|..|.|||
T Consensus       150 ~t~lh~A~~~~~~eIVk~Lls~----Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpL  225 (437)
T PHA02795        150 LNAYFRGICKKESSVVEFILNC----GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLL  225 (437)
T ss_pred             CCHHHHHHHcCcHHHHHHHHhc----CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHH
Confidence            4555555555555555555552    221 1111     12245566666666666777777777777777777788888


Q ss_pred             HHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCC-------chhHHHHHHhccch
Q 013706           79 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG-------SAKLRELLLWHSEE  137 (438)
Q Consensus        79 ~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~-------~~~~~~lL~~~~~~  137 (438)
                      |+|+    ..|+.+++++|+++|++++.+|..|+||||+++..+.       +.+++++|+..+++
T Consensus       226 h~Aa----~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        226 YRAI----YAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             HHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence            8887    6777788888888888888888888888844444332       34677777766654

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=2.1e-16  Score=145.52  Aligned_cols=198  Identities=19%  Similarity=0.370  Sum_probs=142.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-cccc-chHHHHHHHHH-------ccCcEEEE
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGH-TGPKTRRRIKE-------AEGGILFV  268 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~-~~~~~~~~~~~-------a~~~il~i  268 (438)
                      ...||||.||+|+|||++|+.||+.++.       ||..++|..+... |+|+ .+.-+.+++..       |+.||+||
T Consensus       225 eKSNvLllGPtGsGKTllaqTLAr~ldV-------PfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVfl  297 (564)
T KOG0745|consen  225 EKSNVLLLGPTGSGKTLLAQTLARVLDV-------PFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFL  297 (564)
T ss_pred             ecccEEEECCCCCchhHHHHHHHHHhCC-------CeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEE
Confidence            4579999999999999999999999988       9999999998765 8998 45556666544       46699999


Q ss_pred             eCcccccCCCCCC--C-chhHHHHHHHHHhhccC-----------------------CCEEEEEecCChhHHHHhhhC--
Q 013706          269 DEAYRLIPMQKAD--D-KDYGIEALEEIMSVMDG-----------------------GKVVVIFAGYSEPMKRVIASN--  320 (438)
Q Consensus       269 DEid~l~~~~~~~--~-~~~~~~~~~~ll~~~~~-----------------------~~v~vi~~~~~~~~~~~~~~~--  320 (438)
                      ||+|++..+..+-  . +-.+..+...||.++++                       .+|.+|+.+--..++.++...  
T Consensus       298 DEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~  377 (564)
T KOG0745|consen  298 DEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLD  377 (564)
T ss_pred             ehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhc
Confidence            9999999654422  1 22456788999999986                       135666655322233222111  


Q ss_pred             -------------------------------------------------cCccCCCCcceeCCCCCHHHHHHHHH---HH
Q 013706          321 -------------------------------------------------EGFCRRVTKFFHFNDFNSEELAKILH---IK  348 (438)
Q Consensus       321 -------------------------------------------------p~l~~R~~~~i~~~~~~~~e~~~il~---~~  348 (438)
                                                                       |.|..||+..+.|..++..++.+++.   ..
T Consensus       378 d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPkna  457 (564)
T KOG0745|consen  378 DKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNA  457 (564)
T ss_pred             chhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhh
Confidence                                                             88999999999999999999999882   22


Q ss_pred             Hhccccccccccc-cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccc
Q 013706          349 MNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL  408 (438)
Q Consensus       349 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~  408 (438)
                      |-++.+.  .++. .+...++.+++..+++...    .+...+|.|+.++|++...+..-+
T Consensus       458 L~~Qyk~--lf~~~nV~L~fTe~Al~~IAq~Al----~r~TGARgLRsIlE~~Lleamfev  512 (564)
T KOG0745|consen  458 LGKQYKK--LFGMDNVELHFTEKALEAIAQLAL----KRKTGARGLRSILESLLLEAMFEV  512 (564)
T ss_pred             HHHHHHH--HhccCCeeEEecHHHHHHHHHHHH----hhccchHHHHHHHHHHHhhhcccC
Confidence            2222111  1222 3445678889988887654    334557999999999998875444

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.71  E-value=1.9e-16  Score=157.80  Aligned_cols=188  Identities=19%  Similarity=0.219  Sum_probs=133.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC----
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDR----  233 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~----  233 (438)
                      ..|++++|++.+++.+...+..                ....| +||+||||||||++|+++|+.+.........+    
T Consensus        13 ~~f~divGq~~v~~~L~~~i~~----------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C   76 (527)
T PRK14969         13 KSFSELVGQEHVVRALTNALEQ----------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC   76 (527)
T ss_pred             CcHHHhcCcHHHHHHHHHHHHc----------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence            4789999999999988876431                23344 68999999999999999999986432211112    


Q ss_pred             -------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706          234 -------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI  293 (438)
Q Consensus       234 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l  293 (438)
                                   +++++++.      ...-..++.+++.+       +..|+||||+|.|..           .+.|.|
T Consensus        77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naL  139 (527)
T PRK14969         77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAM  139 (527)
T ss_pred             HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHH
Confidence                         22222211      11223455665544       237999999999975           455899


Q ss_pred             HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706          294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  371 (438)
Q Consensus       294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  371 (438)
                      |..+++  +.+++|++|+...  .+   .+.+++|+ ..++|++++.+++.+.+...++++.           ..++.++
T Consensus       140 LK~LEepp~~~~fIL~t~d~~--ki---l~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~eg-----------i~~~~~a  202 (527)
T PRK14969        140 LKTLEEPPEHVKFILATTDPQ--KI---PVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQEN-----------IPFDATA  202 (527)
T ss_pred             HHHHhCCCCCEEEEEEeCChh--hC---chhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence            999998  5677777765432  22   45688898 9999999999999999999887642           2356677


Q ss_pred             HHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          372 IAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      +..++...       .|+.|.+.++++++...
T Consensus       203 l~~la~~s-------~Gslr~al~lldqai~~  227 (527)
T PRK14969        203 LQLLARAA-------AGSMRDALSLLDQAIAY  227 (527)
T ss_pred             HHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence            77777654       67788899999888654

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.71  E-value=1e-15  Score=149.63  Aligned_cols=228  Identities=14%  Similarity=0.121  Sum_probs=146.5

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      +.+.|.+...++|...+....            ....+.+++++||||||||++++.+++.+...+  ....++.+++..
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~------------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~--~~~~~v~in~~~   95 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPAL------------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA--VKVVYVYINCQI   95 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHh------------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEECCc
Confidence            557788877777776654321            123567899999999999999999999885433  123566777653


Q ss_pred             c----------cccccc-------cchHHH-HHHH---HHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC
Q 013706          242 L----------VGEFVG-------HTGPKT-RRRI---KEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG  299 (438)
Q Consensus       242 ~----------~~~~~g-------~~~~~~-~~~~---~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~  299 (438)
                      .          ..++.+       .+...+ ..+.   ... .+.||+|||+|.+.....       .+.+..|+..++.
T Consensus        96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~  168 (394)
T PRK00411         96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEE  168 (394)
T ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhc
Confidence            2          122222       111111 2222   211 237999999999982211       1456777766653


Q ss_pred             ---CCEEEEEecCChhHHHHhhhCcCccCCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHH
Q 013706          300 ---GKVVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL  375 (438)
Q Consensus       300 ---~~v~vi~~~~~~~~~~~~~~~p~l~~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (438)
                         .++.+|++++.......  .+|.+.+|| ...|.|++|+.+++.+|++..+...        +. ...++++++..+
T Consensus       169 ~~~~~v~vI~i~~~~~~~~~--l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--------~~-~~~~~~~~l~~i  237 (394)
T PRK00411        169 YPGARIGVIGISSDLTFLYI--LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--------FY-PGVVDDEVLDLI  237 (394)
T ss_pred             cCCCeEEEEEEECCcchhhh--cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--------cc-cCCCCHhHHHHH
Confidence               36777887765544433  277788887 5789999999999999999888542        11 123566666666


Q ss_pred             HHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          376 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       376 ~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      .+...+    ..|+.|.+.+++..|...+..+         +..+|+.+|+.+|++.+.
T Consensus       238 ~~~~~~----~~Gd~r~a~~ll~~a~~~a~~~---------~~~~I~~~~v~~a~~~~~  283 (394)
T PRK00411        238 ADLTAR----EHGDARVAIDLLRRAGLIAERE---------GSRKVTEEDVRKAYEKSE  283 (394)
T ss_pred             HHHHHH----hcCcHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHH
Confidence            554421    2566777778888887766322         235799999999998764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.71  E-value=1.8e-17  Score=148.29  Aligned_cols=124  Identities=30%  Similarity=0.385  Sum_probs=83.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHc-----CCHHHHHHHHHCCCCccccc-CCCC
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN-----GCNEAAKLLLAHGAFIEAKA-NNGM   75 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~-~~g~   75 (438)
                      ++|+|+||||+.++++++|+.||+.   .-+++|.+|+.|+||+|+++..     .+..+|.-|...| |+|++. ..|+
T Consensus       266 sNGNTALHYsVSHaNF~VV~~LLDS---gvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQ  341 (452)
T KOG0514|consen  266 SNGNTALHYAVSHANFDVVSILLDS---GVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQ  341 (452)
T ss_pred             CCCCeeeeeeecccchHHHHHHhcc---CcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcc
Confidence            5899999999999999999999994   3456777777777776666542     2345555555443 455542 3466


Q ss_pred             cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                      |+|++|+    .+|+.++++.||..|+|+|+.|.+|-|+| ++|+.+|+.+++.+|+..
T Consensus       342 TALMLAV----SHGr~d~vk~LLacgAdVNiQDdDGSTAL-MCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  342 TALMLAV----SHGRVDMVKALLACGADVNIQDDDGSTAL-MCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hhhhhhh----hcCcHHHHHHHHHccCCCccccCCccHHH-hhhhhhChHHHHHHHhcc
Confidence            6666666    66666666666666666666666666666 666666666666666544

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.71  E-value=8.9e-16  Score=148.50  Aligned_cols=229  Identities=19%  Similarity=0.162  Sum_probs=143.5

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc--CCCCEEEeec
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--PTDRVTEVQR  239 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~--~~~~~~~~~~  239 (438)
                      +++.|.+...+.|...+....            ....+.+++++||||||||++++.+++.+......  ....++.+++
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~------------~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~   82 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPIL------------RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC   82 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence            468899988888877755331            12356789999999999999999999987532110  0125666666


Q ss_pred             cccc----------cccc--cc-------c-hHHHHHHHHH---c-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706          240 TDLV----------GEFV--GH-------T-GPKTRRRIKE---A-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS  295 (438)
Q Consensus       240 ~~~~----------~~~~--g~-------~-~~~~~~~~~~---a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~  295 (438)
                      ....          .++.  |.       + ......+++.   . +..||+|||+|.+....+        .++..|+.
T Consensus        83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~--------~~L~~l~~  154 (365)
T TIGR02928        83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD--------DLLYQLSR  154 (365)
T ss_pred             CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc--------HHHHhHhc
Confidence            4322          1121  21       1 1112223332   2 346899999999984322        45667766


Q ss_pred             hc--c---CCCEEEEEecCChhHHHHhhhCcCccCCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccH
Q 013706          296 VM--D---GGKVVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM  369 (438)
Q Consensus       296 ~~--~---~~~v~vi~~~~~~~~~~~~~~~p~l~~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~  369 (438)
                      ..  .   +..+.+|++++...+..  ..++.+.+|| +..+.|++|+.+|+.+|++..+....        . ...+++
T Consensus       155 ~~~~~~~~~~~v~lI~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~--------~-~~~~~~  223 (365)
T TIGR02928       155 ARSNGDLDNAKVGVIGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAF--------Y-DGVLDD  223 (365)
T ss_pred             cccccCCCCCeEEEEEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhc--------c-CCCCCh
Confidence            62  2   25677777765543322  1278888898 47899999999999999999886311        0 112455


Q ss_pred             HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      +++..+.....    ...|+.|.+.++++.|...+..+         ....|+.+|+..|++.+.
T Consensus       224 ~~l~~i~~~~~----~~~Gd~R~al~~l~~a~~~a~~~---------~~~~it~~~v~~a~~~~~  275 (365)
T TIGR02928       224 GVIPLCAALAA----QEHGDARKAIDLLRVAGEIAERE---------GAERVTEDHVEKAQEKIE  275 (365)
T ss_pred             hHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHH
Confidence            55544433221    11477888888888888766322         235688999998887663

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.71  E-value=4.8e-17  Score=159.45  Aligned_cols=132  Identities=30%  Similarity=0.400  Sum_probs=116.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcc------------cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccc
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE------------LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA   69 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~   69 (438)
                      ..|.||||.|+..|++++++.+|+.+.+ .++            +|..|++|.||||+||+.|+.+++..|+..|++++.
T Consensus       223 n~~~~pLhlAve~g~~e~lk~~L~n~~~-~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~  301 (929)
T KOG0510|consen  223 NEKATPLHLAVEGGDIEMLKMCLQNGKK-IADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS  301 (929)
T ss_pred             CCCCcchhhhhhcCCHHHHHHHHhCccc-cchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc
Confidence            4689999999999999999999985332 222            566789999999999999999999999999999999


Q ss_pred             ccCCCCcHHHHHhhcccccCcHHHHHHHHh-C-CCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           70 KANNGMTPLHLSVWYSIRSEDYATVKTLLE-Y-NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        70 ~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~-~-ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      ++.++.||||.|+    +.|++++|+-||+ . ....+..|..|.||| |++.+.++..++++|+..|+...
T Consensus       302 kn~d~~spLH~AA----~yg~~ntv~rLL~~~~~rllne~D~~g~tpL-Hlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  302 KNKDEESPLHFAA----IYGRINTVERLLQESDTRLLNESDLHGMTPL-HLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             cCCCCCCchHHHH----HcccHHHHHHHHhCcCccccccccccCCCch-hhhhhcCHHHHHHHHHhcChhhh
Confidence            9999999999999    7899999999998 4 356677899999999 77778899999999999888765

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.70  E-value=4.7e-16  Score=164.15  Aligned_cols=216  Identities=19%  Similarity=0.288  Sum_probs=151.1

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ..++|++.+.+.+.+.+....       .+...+..+...+||+||||||||++|+++|+.+...    ..+++.++.+.
T Consensus       565 ~~v~GQ~~av~~v~~~i~~~~-------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~----~~~~i~~d~s~  633 (852)
T TIGR03346       565 ERVVGQDEAVEAVSDAIRRSR-------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD----EDAMVRIDMSE  633 (852)
T ss_pred             cccCCChHHHHHHHHHHHHHh-------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC----CCcEEEEechh
Confidence            458899888888887654331       2222222344569999999999999999999987532    23777777665


Q ss_pred             ccc------------cccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------
Q 013706          242 LVG------------EFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------  300 (438)
Q Consensus       242 ~~~------------~~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------  300 (438)
                      +..            .|+|..+ ..+...+.....+|||||||+++.+           .+.+.|++.|+++        
T Consensus       634 ~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~-----------~v~~~Ll~~l~~g~l~d~~g~  702 (852)
T TIGR03346       634 YMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP-----------DVFNVLLQVLDDGRLTDGQGR  702 (852)
T ss_pred             hcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH-----------HHHHHHHHHHhcCceecCCCe
Confidence            322            1344432 3455556666678999999999987           5559999999753        


Q ss_pred             -----CEEEEEecCChhH--HH-------------H---h--hhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706          301 -----KVVVIFAGYSEPM--KR-------------V---I--ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED  355 (438)
Q Consensus       301 -----~v~vi~~~~~~~~--~~-------------~---~--~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~  355 (438)
                           +.+||++++...-  ..             +   +  .-.|.|..|++.++.|.+++.+++.+|+...+.....+
T Consensus       703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~  782 (852)
T TIGR03346       703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR  782 (852)
T ss_pred             EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence                 2457777664111  00             0   0  01388999999999999999999999999988865443


Q ss_pred             cccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706          356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      ....+  +...++++++..++.+.|    ..++|+|.|++++++.+....
T Consensus       783 l~~~~--~~l~i~~~a~~~L~~~~~----~~~~gaR~L~~~i~~~i~~~l  826 (852)
T TIGR03346       783 LAERK--ITLELSDAALDFLAEAGY----DPVYGARPLKRAIQREIENPL  826 (852)
T ss_pred             HHHCC--CeecCCHHHHHHHHHhCC----CCCCCchhHHHHHHHHHHHHH
Confidence            22223  346789999999999765    136889999999999886644

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.70  E-value=5.8e-17  Score=169.24  Aligned_cols=128  Identities=30%  Similarity=0.373  Sum_probs=62.9

Q ss_pred             CCcHHHHHHHc-CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            4 AQTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         4 g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      |+||||+|+.. ++.++++.|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~----~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~  416 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLE----LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFAL  416 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHH----cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHH
Confidence            34444444432 23444444444    34455555555555555555555555555555555555555555555555554


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ  138 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~  138 (438)
                      .   ..+...++++|+++|++++.+|..|+||||+++..+...+++++|+..|++.
T Consensus       417 ~---~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        417 C---GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV  469 (682)
T ss_pred             H---cCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC
Confidence            1   1222334555555555555555555555533333233445555555555443

>PHA02946 ankyin-like protein; Provisional

Probab=99.70  E-value=7.9e-17  Score=158.53  Aligned_cols=130  Identities=19%  Similarity=0.251  Sum_probs=94.5

Q ss_pred             CCCCcHHHHHHHcC--CHHHHHHHhcCCCCCCccccc-ccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706            2 QMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEA-QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         2 ~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      ..|+||||+|+..+  +.+++++|++    .|++++. .|..|.|||| ||..|+.+++++|++.|++++.+|..|+|||
T Consensus       103 ~~g~TpLh~A~~~~~~~~e~v~lLl~----~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~L  177 (446)
T PHA02946        103 KQHKTPLYYLSGTDDEVIERINLLVQ----YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHI  177 (446)
T ss_pred             CCCCCHHHHHHHcCCchHHHHHHHHH----cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHH
Confidence            36888888888765  4788888888    6777774 5777888886 5666778888888888888888888888888


Q ss_pred             HHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCC-CchhHHHHHHhccchHH
Q 013706           79 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP-GSAKLRELLLWHSEEQR  139 (438)
Q Consensus        79 ~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~-~~~~~~~lL~~~~~~~~  139 (438)
                      |+|+..  .+++.+++++|+++|++++.+|.+|+||||+++..+ +..+++++|.. +++..
T Consensus       178 h~A~~~--~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin  236 (446)
T PHA02946        178 HRHLMS--DNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVN  236 (446)
T ss_pred             HHHHHh--cCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCC
Confidence            887632  345567788888888888888888888885544432 35567777664 44443

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.69  E-value=1.2e-15  Score=149.92  Aligned_cols=190  Identities=19%  Similarity=0.205  Sum_probs=134.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  230 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--------  230 (438)
                      ..|++++|++.+++.+...+..               ...+..+|||||||+|||++|+++++.+.......        
T Consensus        11 ~~fdeiiGqe~v~~~L~~~I~~---------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~   75 (535)
T PRK08451         11 KHFDELIGQESVSKTLSLALDN---------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI   75 (535)
T ss_pred             CCHHHccCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence            4799999999999988877431               11233459999999999999999999885322111        


Q ss_pred             ---------CCCEEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          231 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       231 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                               ...++++++++-      ..-..++.+++.       +...|++|||+|.|..           .+.+.||
T Consensus        76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NALL  138 (535)
T PRK08451         76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNALL  138 (535)
T ss_pred             HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence                     112233322210      012456666554       2347999999999976           4558999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..|++  ..+++|++++..  ..+   .|++++|+ ..++|.+++.+++...+...+.++.           ..++++++
T Consensus       139 K~LEEpp~~t~FIL~ttd~--~kL---~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EG-----------i~i~~~Al  201 (535)
T PRK08451        139 KTLEEPPSYVKFILATTDP--LKL---PATILSRT-QHFRFKQIPQNSIISHLKTILEKEG-----------VSYEPEAL  201 (535)
T ss_pred             HHHhhcCCceEEEEEECCh--hhC---chHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99987  456666665432  333   68899996 8999999999999999999888753           33567888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ..++...       .|+.|.+.++++++....
T Consensus       202 ~~Ia~~s-------~GdlR~alnlLdqai~~~  226 (535)
T PRK08451        202 EILARSG-------NGSLRDTLTLLDQAIIYC  226 (535)
T ss_pred             HHHHHHc-------CCcHHHHHHHHHHHHHhc
Confidence            8777754       577888999998877654

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=4.4e-16  Score=156.99  Aligned_cols=190  Identities=21%  Similarity=0.208  Sum_probs=134.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  231 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-------  231 (438)
                      ..|++++|++.+++.|...+..               ...+..+||+||||||||++|+++|+.+........       
T Consensus        13 ~~f~~iiGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~   77 (576)
T PRK14965         13 QTFSDLTGQEHVSRTLQNAIDT---------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP   77 (576)
T ss_pred             CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence            4799999999999998876431               113344699999999999999999999864321111       


Q ss_pred             ----------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          232 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       232 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                ..++++++.+-      ..-..++.+.+.+       +..|+||||+|.|..           ...|.|+
T Consensus        78 ~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLL  140 (576)
T PRK14965         78 PCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALL  140 (576)
T ss_pred             HHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHH
Confidence                      12333333211      1123444544432       347999999999985           3459999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..|++  ..+++|++|+..  ..+   .+++++|+ ..++|.+++.+++...+...+.++.           ..++.+++
T Consensus       141 k~LEepp~~~~fIl~t~~~--~kl---~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~eg-----------i~i~~~al  203 (576)
T PRK14965        141 KTLEEPPPHVKFIFATTEP--HKV---PITILSRC-QRFDFRRIPLQKIVDRLRYIADQEG-----------ISISDAAL  203 (576)
T ss_pred             HHHHcCCCCeEEEEEeCCh--hhh---hHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHH
Confidence            99987  567777766433  333   67789998 8999999999999999998888753           34567888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ..++...       .|+.|.+.+.++++....
T Consensus       204 ~~la~~a-------~G~lr~al~~Ldqliay~  228 (576)
T PRK14965        204 ALVARKG-------DGSMRDSLSTLDQVLAFC  228 (576)
T ss_pred             HHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence            8877765       577888888888776554

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.69  E-value=8e-16  Score=138.38  Aligned_cols=180  Identities=15%  Similarity=0.173  Sum_probs=122.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHH-HccCcEEEEeCcccccC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLIP  276 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~il~iDEid~l~~  276 (438)
                      ...+++|+||||||||++|+++++.+...+    ..++.+++.++...            +. ...+.+|||||+|.+.+
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~----~~~~~i~~~~~~~~------------~~~~~~~~~liiDdi~~l~~  104 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYGG----RNARYLDAASPLLA------------FDFDPEAELYAVDDVERLDD  104 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEEehHHhHHH------------HhhcccCCEEEEeChhhcCc
Confidence            456899999999999999999999875433    25666666554321            11 12457999999998865


Q ss_pred             CCCCCCchhHHHHHHHHHhhcc-CCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccc
Q 013706          277 MQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~~~-~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      ..+        ..+..++..+. .+..++|++++..+...  ...+.|++||  ...+++++|+.++...++.....+..
T Consensus       105 ~~~--------~~L~~~~~~~~~~~~~~vl~~~~~~~~~~--~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~  174 (227)
T PRK08903        105 AQQ--------IALFNLFNRVRAHGQGALLVAGPAAPLAL--PLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG  174 (227)
T ss_pred             hHH--------HHHHHHHHHHHHcCCcEEEEeCCCCHHhC--CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            333        22333333332 34444555555444321  1146777788  57999999999988888887765432


Q ss_pred             cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                                 ..++++++..+.. .|      +||.++++++++.....+          ......||...+++.+.
T Consensus       175 -----------v~l~~~al~~L~~-~~------~gn~~~l~~~l~~l~~~~----------~~~~~~i~~~~~~~~l~  224 (227)
T PRK08903        175 -----------LQLADEVPDYLLT-HF------RRDMPSLMALLDALDRYS----------LEQKRPVTLPLLREMLA  224 (227)
T ss_pred             -----------CCCCHHHHHHHHH-hc------cCCHHHHHHHHHHHHHHH----------HHhCCCCCHHHHHHHHh
Confidence                       4467889999988 56      999999999999865433          12235688888877765

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.68  E-value=1.1e-15  Score=153.27  Aligned_cols=189  Identities=20%  Similarity=0.222  Sum_probs=134.5

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-C-----
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-D-----  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-~-----  232 (438)
                      ..|++++|++.+++.|...+..               .+.+..+||+||+|||||++|+++|+.+...+.... +     
T Consensus        21 ~~f~dliGq~~~v~~L~~~~~~---------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~   85 (598)
T PRK09111         21 QTFDDLIGQEAMVRTLTNAFET---------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL   85 (598)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence            4789999999999998886431               124556999999999999999999999875432111 1     


Q ss_pred             ----------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHH
Q 013706          233 ----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA  289 (438)
Q Consensus       233 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~  289 (438)
                                      .++++++++    ..  .-..++.+++.+       ...|+||||+|.|..           ..
T Consensus        86 cg~c~~C~~i~~g~h~Dv~e~~a~s----~~--gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a  148 (598)
T PRK09111         86 CGVGEHCQAIMEGRHVDVLEMDAAS----HT--GVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AA  148 (598)
T ss_pred             CcccHHHHHHhcCCCCceEEecccc----cC--CHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HH
Confidence                            122332221    01  123455665544       347999999999975           44


Q ss_pred             HHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccc
Q 013706          290 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC  367 (438)
Q Consensus       290 ~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~  367 (438)
                      .+.|+..|++  ..+++|++++..  +.+   .+.+++|+ ..+.|..++.+++..+++..+.++.           ..+
T Consensus       149 ~naLLKtLEePp~~~~fIl~tte~--~kl---l~tI~SRc-q~~~f~~l~~~el~~~L~~i~~keg-----------i~i  211 (598)
T PRK09111        149 FNALLKTLEEPPPHVKFIFATTEI--RKV---PVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEG-----------VEV  211 (598)
T ss_pred             HHHHHHHHHhCCCCeEEEEEeCCh--hhh---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence            5899999987  556666665432  233   46688898 7899999999999999999988653           345


Q ss_pred             cHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          368 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      +.+++..++...       .|+.|.+.+.+++++..
T Consensus       212 ~~eAl~lIa~~a-------~Gdlr~al~~Ldkli~~  240 (598)
T PRK09111        212 EDEALALIARAA-------EGSVRDGLSLLDQAIAH  240 (598)
T ss_pred             CHHHHHHHHHHc-------CCCHHHHHHHHHHHHhh
Confidence            778888877765       67788888888877543

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.68  E-value=7.4e-17  Score=161.16  Aligned_cols=206  Identities=19%  Similarity=0.226  Sum_probs=148.2

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .+.+++|.....+.+.+.+..+              .....++++.|++|||||++|++++..    +.....+|+.++|
T Consensus       136 ~~~~lig~s~~~~~l~~~~~~~--------------~~~~~~vli~Ge~GtGK~~lA~~ih~~----s~~~~~~~i~i~c  197 (469)
T PRK10923        136 PTTDIIGEAPAMQDVFRIIGRL--------------SRSSISVLINGESGTGKELVAHALHRH----SPRAKAPFIALNM  197 (469)
T ss_pred             ccccceecCHHHHHHHHHHHHH--------------hccCCeEEEEeCCCCcHHHHHHHHHhc----CCCCCCCeEeeeC
Confidence            3556888877766666654432              235678999999999999999999984    4445679999999


Q ss_pred             ccccc-----cccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706          240 TDLVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  300 (438)
Q Consensus       240 ~~~~~-----~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  300 (438)
                      +.+..     ..+|+...       .....|+.+.+|+|||||++.+.+..|           ..|+..++++       
T Consensus       198 ~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q-----------~~L~~~l~~~~~~~~~~  266 (469)
T PRK10923        198 AAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQ-----------TRLLRVLADGQFYRVGG  266 (469)
T ss_pred             CCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHH-----------HHHHHHHhcCcEEeCCC
Confidence            87532     34554321       112346778899999999999987544           7888888753       


Q ss_pred             ------CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccH
Q 013706          301 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM  369 (438)
Q Consensus       301 ------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~  369 (438)
                            ++.+|++++.+....+..  -.+.|..|| ...|.+|++..  +++..++..++.+....   ++.. ...+++
T Consensus       267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~---~~~~-~~~~~~  342 (469)
T PRK10923        267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARE---LGVE-AKLLHP  342 (469)
T ss_pred             CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHH---cCCC-CCCcCH
Confidence                  247777776655432210  125566677 67888888874  88999999999876431   1111 235899


Q ss_pred             HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +++..+..+.|      |||.|+|+++++++...+
T Consensus       343 ~a~~~L~~~~w------pgNv~eL~~~i~~~~~~~  371 (469)
T PRK10923        343 ETEAALTRLAW------PGNVRQLENTCRWLTVMA  371 (469)
T ss_pred             HHHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence            99999999999      999999999999998764

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.68  E-value=1.7e-16  Score=159.43  Aligned_cols=136  Identities=20%  Similarity=0.277  Sum_probs=109.7

Q ss_pred             CCCCcHHHHHHHc---CCHHHHHHHhcCCCCCCccc-ccccCCCChHHHHHHHc--CCHHHHHHHHHCCCCccc-ccCCC
Q 013706            2 QMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVEL-EAQNMYGETPLHMAAKN--GCNEAAKLLLAHGAFIEA-KANNG   74 (438)
Q Consensus         2 ~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~-~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~-~~~~g   74 (438)
                      ..|+||||.|+..   |+.+++++|++    .|+++ +.+|..|+||||+|+..  ++.+++++|+++|++++. .+..|
T Consensus       106 ~~g~tpL~~a~~~~~~~~~eiv~~Ll~----~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g  181 (494)
T PHA02989        106 FNGVSPIVCFIYNSNINNCDMLRFLLS----KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYG  181 (494)
T ss_pred             CCCCcHHHHHHHhcccCcHHHHHHHHH----CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccC
Confidence            3689999988765   67899999998    78899 78899999999998764  688999999999999988 67889


Q ss_pred             CcHHHHHhhcccccCcHHHHHHHHhCCCCCcc--------------------------------------cCCCCCcccc
Q 013706           75 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSA--------------------------------------KDNEGKTPLD  116 (438)
Q Consensus        75 ~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~--------------------------------------~d~~g~t~l~  116 (438)
                      .||||+|+..+...++.+++++|+++|++++.                                      +|..|+||| 
T Consensus       182 ~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL-  260 (494)
T PHA02989        182 LTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPL-  260 (494)
T ss_pred             CChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHH-
Confidence            99999987544345678888888888876553                                      455699999 


Q ss_pred             ccccCCCchhHHHHHHhccchHHHHH
Q 013706          117 HLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus       117 ~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                      |.|+..++.+++++|+..|++.....
T Consensus       261 ~~Aa~~~~~~~v~~LL~~Gadin~~d  286 (494)
T PHA02989        261 LISAKVDNYEAFNYLLKLGDDIYNVS  286 (494)
T ss_pred             HHHHHhcCHHHHHHHHHcCCCccccC
Confidence            55556778889999999888766553

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.68  E-value=4.5e-16  Score=153.83  Aligned_cols=189  Identities=18%  Similarity=0.234  Sum_probs=131.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  231 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-------  231 (438)
                      ..|++++|++.+++.+...+..               ...+..+||+||||||||++|+++|+.+........       
T Consensus        13 ~~F~dIIGQe~iv~~L~~aI~~---------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~   77 (605)
T PRK05896         13 HNFKQIIGQELIKKILVNAILN---------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS   77 (605)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence            4689999999999888876431               123445899999999999999999999864332211       


Q ss_pred             ----------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          232 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       232 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                ..++++++++.      ..-..++.+++.+       ...|++|||+|.|..           .+.+.|+
T Consensus        78 sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLL  140 (605)
T PRK05896         78 VCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALL  140 (605)
T ss_pred             HHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHH
Confidence                      12333333211      1122344444332       347999999999965           3458999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..|++  ..+++|++++.  ...+   .|++++|+ ..++|++++.+++...+...+.+..           ..++++++
T Consensus       141 KtLEEPp~~tvfIL~Tt~--~~KL---l~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~keg-----------i~Is~eal  203 (605)
T PRK05896        141 KTLEEPPKHVVFIFATTE--FQKI---PLTIISRC-QRYNFKKLNNSELQELLKSIAKKEK-----------IKIEDNAI  203 (605)
T ss_pred             HHHHhCCCcEEEEEECCC--hHhh---hHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99986  45666666543  2333   67889998 7899999999999999999887642           33566777


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++...       .|+.|.+.+.++.+...
T Consensus       204 ~~La~lS-------~GdlR~AlnlLekL~~y  227 (605)
T PRK05896        204 DKIADLA-------DGSLRDGLSILDQLSTF  227 (605)
T ss_pred             HHHHHHc-------CCcHHHHHHHHHHHHhh
Confidence            7777654       57778888888876544

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.9e-15  Score=141.12  Aligned_cols=225  Identities=16%  Similarity=0.191  Sum_probs=145.7

Q ss_pred             hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706          164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  243 (438)
Q Consensus       164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~  243 (438)
                      +.+.+....++...+...            +....|.++++|||||||||.+++.+.+++.......  .++.++|....
T Consensus        19 l~~Re~ei~~l~~~l~~~------------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~--~~~yINc~~~~   84 (366)
T COG1474          19 LPHREEEINQLASFLAPA------------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV--EVVYINCLELR   84 (366)
T ss_pred             ccccHHHHHHHHHHHHHH------------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccC--ceEEEeeeeCC
Confidence            555665555555543322            2234677899999999999999999999997532211  16777775422


Q ss_pred             cc----------c-----cccchHH----HHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--C
Q 013706          244 GE----------F-----VGHTGPK----TRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--K  301 (438)
Q Consensus       244 ~~----------~-----~g~~~~~----~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--~  301 (438)
                      +.          .     .|-+...    +.+.+..- ..-|++|||+|.|..+.+        +++..|+...+..  +
T Consensus        85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~~~~  156 (366)
T COG1474          85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGENKVK  156 (366)
T ss_pred             CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccccee
Confidence            21          1     1111111    12222332 236899999999998665        6777777777654  4


Q ss_pred             EEEEEecCChhHHHHhhhCcCccCCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706          302 VVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  380 (438)
Q Consensus       302 v~vi~~~~~~~~~~~~~~~p~l~~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (438)
                      +.+|+.++...+...  .+|.+.+|| +..|.||+|+.+|+.+|++...+..        +. ...++++++.-.+ ...
T Consensus       157 v~vi~i~n~~~~~~~--ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--------~~-~~~~~~~vl~lia-~~~  224 (366)
T COG1474         157 VSIIAVSNDDKFLDY--LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--------FS-AGVIDDDVLKLIA-ALV  224 (366)
T ss_pred             EEEEEEeccHHHHHH--hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--------cc-CCCcCccHHHHHH-HHH
Confidence            566666665554433  389999998 7789999999999999999988752        11 1223444443333 222


Q ss_pred             hHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          381 TEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       381 ~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      ++   ..|+.|....++..|.+.|         +.+...+++.+++..|.+++.
T Consensus       225 a~---~~GDAR~aidilr~A~eiA---------e~~~~~~v~~~~v~~a~~~~~  266 (366)
T COG1474         225 AA---ESGDARKAIDILRRAGEIA---------EREGSRKVSEDHVREAQEEIE  266 (366)
T ss_pred             HH---cCccHHHHHHHHHHHHHHH---------HhhCCCCcCHHHHHHHHHHhh
Confidence            21   2457888889999998887         334557788888888865553

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.68  E-value=2.6e-15  Score=144.76  Aligned_cols=189  Identities=17%  Similarity=0.240  Sum_probs=130.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  230 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--------  230 (438)
                      ..|++++|++.+++.+.+.+..               ...+..+||+||||+|||++|+++++.+.......        
T Consensus        11 ~~~~~iig~~~~~~~l~~~~~~---------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~   75 (355)
T TIGR02397        11 QTFEDVIGQEHIVQTLKNAIKN---------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE   75 (355)
T ss_pred             CcHhhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            4789999999999988876431               12344689999999999999999999886431110        


Q ss_pred             ---------CCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          231 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       231 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                               ...++.+++..      ......++.+++.+       ...|++|||+|.+..           ...+.|+
T Consensus        76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll  138 (355)
T TIGR02397        76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALL  138 (355)
T ss_pred             HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHH
Confidence                     11233333321      11222355555543       236999999998864           3458899


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..+++  ..+++|++++..  ..+   .+++++|+ ..++|++|+.+++.+++..++++..           ..++++++
T Consensus       139 ~~le~~~~~~~lIl~~~~~--~~l---~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~a~  201 (355)
T TIGR02397       139 KTLEEPPEHVVFILATTEP--HKI---PATILSRC-QRFDFKRIPLEDIVERLKKILDKEG-----------IKIEDEAL  201 (355)
T ss_pred             HHHhCCccceeEEEEeCCH--HHH---HHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99976  456666665332  233   56788898 7899999999999999999987642           23566777


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++...       .|+.+.+.+.++++...
T Consensus       202 ~~l~~~~-------~g~~~~a~~~lekl~~~  225 (355)
T TIGR02397       202 ELIARAA-------DGSLRDALSLLDQLISF  225 (355)
T ss_pred             HHHHHHc-------CCChHHHHHHHHHHHhh
Confidence            7777654       56777788887776653

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.68  E-value=1.5e-16  Score=159.86  Aligned_cols=131  Identities=21%  Similarity=0.257  Sum_probs=111.2

Q ss_pred             CCCcHHHHHHH------cCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHc---CCHHHHHHHHHCCCCc-ccccC
Q 013706            3 MAQTPLHVSAG------YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN---GCNEAAKLLLAHGAFI-EAKAN   72 (438)
Q Consensus         3 ~g~tpLh~A~~------~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~   72 (438)
                      .|.||||.|+.      .++.++|++|++    .|+++|.+|..|+||||.|+..   ++.+++++|+++|+++ +.+|.
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~----~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~  143 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVKLLLK----FGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS  143 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC
Confidence            47899999875      588999999999    7999999999999999988765   6799999999999999 89999


Q ss_pred             CCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcc-cCCCCCccccccccC---CCchhHHHHHHhccchHH
Q 013706           73 NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA-KDNEGKTPLDHLSNG---PGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        73 ~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~-~d~~g~t~l~~~a~~---~~~~~~~~lL~~~~~~~~  139 (438)
                      .|+||||+|+..  ..++.+++++|+++|++++. .+..|.||++.++..   .++.+++++|+..|++..
T Consensus       144 ~g~tpLh~a~~~--~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn  212 (494)
T PHA02989        144 RGYNLLHMYLES--FSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE  212 (494)
T ss_pred             CCCCHHHHHHHh--ccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcc
Confidence            999999998732  34689999999999999998 688999999544322   347889999988876543

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.68  E-value=2.2e-16  Score=156.82  Aligned_cols=206  Identities=18%  Similarity=0.197  Sum_probs=146.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .+..++|.....+.+.+.+..+              .....+++++|++||||+++|++++...    .....+|+.++|
T Consensus       137 ~~~~lig~s~~~~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s----~~~~~~~v~v~c  198 (445)
T TIGR02915       137 ALRGLITSSPGMQKICRTIEKI--------------APSDITVLLLGESGTGKEVLARALHQLS----DRKDKRFVAINC  198 (445)
T ss_pred             cccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhC----CcCCCCeEEEEC
Confidence            3456788777766666654433              2345789999999999999999999843    334568999999


Q ss_pred             ccccc-----cccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706          240 TDLVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  300 (438)
Q Consensus       240 ~~~~~-----~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  300 (438)
                      +.+..     .++|+..       ......++.|.+|+|||||++.|.+..|           ..|++.++++       
T Consensus       199 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q-----------~~l~~~l~~~~~~~~~~  267 (445)
T TIGR02915       199 AAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQ-----------AKLLRFLQERVIERLGG  267 (445)
T ss_pred             CCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHH-----------HHHHHHHhhCeEEeCCC
Confidence            87532     2444321       1223456778999999999999987544           7888888653       


Q ss_pred             ------CEEEEEecCChhHHHHh--hhCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccc-ccccc
Q 013706          301 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKL-HSSCS  368 (438)
Q Consensus       301 ------~v~vi~~~~~~~~~~~~--~~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~-~~~~~  368 (438)
                            ++.+|++++.+....+.  .-.+.|..|+ ...|.+|++..  +++..++..++.+...     .+.. ...++
T Consensus       268 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~-----~~~~~~~~~~  342 (445)
T TIGR02915       268 REEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFAR-----ELKRKTKGFT  342 (445)
T ss_pred             CceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHH-----HhCCCCCCCC
Confidence                  45778877666543221  1123455566 56777888864  7888899999887643     1221 24689


Q ss_pred             HHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706          369 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      ++++..+..+.|      |||.++|++++++|+..+.
T Consensus       343 ~~a~~~L~~~~w------pgNvreL~~~i~~a~~~~~  373 (445)
T TIGR02915       343 DDALRALEAHAW------PGNVRELENKVKRAVIMAE  373 (445)
T ss_pred             HHHHHHHHhCCC------CChHHHHHHHHHHHHHhCC
Confidence            999999999999      9999999999999987543

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.68  E-value=1.9e-15  Score=138.28  Aligned_cols=133  Identities=26%  Similarity=0.294  Sum_probs=93.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc------cccccccccchHHHH----------------
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT------DLVGEFVGHTGPKTR----------------  255 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~----------------  255 (438)
                      ...+++|+||||||||++|+++|+.++.       +++.+++.      ++++.+.|.......                
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~-------~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKRDR-------PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQ   92 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHhCC-------CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccce
Confidence            3568999999999999999999987654       67766553      444544443222111                


Q ss_pred             ----H-HHH-HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC------------------CEEEEEecCCh
Q 013706          256 ----R-RIK-EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------KVVVIFAGYSE  311 (438)
Q Consensus       256 ----~-~~~-~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------------~v~vi~~~~~~  311 (438)
                          . ++. ...+++|+|||++.+.+           ++.+.|+..|+++                  .+.+|+++|+.
T Consensus        93 ~~~~g~l~~A~~~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~  161 (262)
T TIGR02640        93 NWVDNRLTLAVREGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV  161 (262)
T ss_pred             eecCchHHHHHHcCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence                1 111 23568999999999876           4447888888652                  34677777765


Q ss_pred             hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706          312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  349 (438)
Q Consensus       312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l  349 (438)
                      ........+++|++|| ..+.++.|+.++..+|++...
T Consensus       162 ~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~  198 (262)
T TIGR02640       162 EYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKT  198 (262)
T ss_pred             cccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence            4433323378899999 789999999999999998765

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PHA02798 ankyrin-like protein; Provisional

Probab=99.68  E-value=1.6e-16  Score=159.32  Aligned_cols=131  Identities=21%  Similarity=0.212  Sum_probs=78.3

Q ss_pred             CCcHHHHHH--HcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHc-----CCHHHHHHHHHCCCCcccccCCCCc
Q 013706            4 AQTPLHVSA--GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN-----GCNEAAKLLLAHGAFIEAKANNGMT   76 (438)
Q Consensus         4 g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~g~t   76 (438)
                      |.|+++.+.  ..++.++|++|++    .|+++|..|..|.||||+++.+     ++.+++++|+++|+++|.+|..|.|
T Consensus        36 ~~~~~~~yl~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~T  111 (489)
T PHA02798         36 EYSIFQKYLQRDSPSTDIVKLFIN----LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGET  111 (489)
T ss_pred             cchHHHHHHhCCCCCHHHHHHHHH----CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCc
Confidence            445554333  2346667777776    5666676666677777666543     4566677777777777776666777


Q ss_pred             HHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCC--chhHHHHHHhccchHH
Q 013706           77 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG--SAKLRELLLWHSEEQR  139 (438)
Q Consensus        77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~--~~~~~~lL~~~~~~~~  139 (438)
                      |||+|+..+ ..++.+++++|+++|++++.+|.+|.||||+++..+.  ..+++++|+..|++..
T Consensus       112 pLh~a~~~~-~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin  175 (489)
T PHA02798        112 PLYCLLSNG-YINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN  175 (489)
T ss_pred             HHHHHHHcC-CcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc
Confidence            777666210 0125666666776777777777777777633333221  2566666666665543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.67  E-value=1.9e-16  Score=165.42  Aligned_cols=131  Identities=32%  Similarity=0.400  Sum_probs=112.1

Q ss_pred             CCCCcHHHHHHHcCCH-HHHHHHhcCCCCCCcccccccCCCChHHHHHHHcC-CHHHHHHHHHCCCCcccccCCCCcHHH
Q 013706            2 QMAQTPLHVSAGYNKA-EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG-CNEAAKLLLAHGAFIEAKANNGMTPLH   79 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~   79 (438)
                      ..|+||||+|+..|+. +++++|++    .|++++.+|..|+||||+|+..| +.+++++|+..|++++.+|..|.||||
T Consensus       271 ~~g~TpLh~Aa~~~~~~~iv~lLl~----~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh  346 (682)
T PHA02876        271 DCKNTPLHHASQAPSLSRLVPKLLE----RGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLH  346 (682)
T ss_pred             CCCCCHHHHHHhCCCHHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHH
Confidence            3689999999999986 58888888    68889999999999999999988 589999999999999999999999999


Q ss_pred             HHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           80 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        80 ~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      +|+.   ..++.+++..|++.|++++..|..|.||| |.|+..++.+++++|+..+++...
T Consensus       347 ~A~~---~~~~~~iv~lLl~~gadin~~d~~G~TpL-h~Aa~~~~~~iv~~Ll~~gad~~~  403 (682)
T PHA02876        347 QAST---LDRNKDIVITLLELGANVNARDYCDKTPI-HYAAVRNNVVIINTLLDYGADIEA  403 (682)
T ss_pred             HHHH---hCCcHHHHHHHHHcCCCCccCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCccc
Confidence            9983   24577888899999999999999999999 555556788889999888876554

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.67  E-value=1.6e-15  Score=151.57  Aligned_cols=189  Identities=17%  Similarity=0.191  Sum_probs=133.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----  233 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~-----  233 (438)
                      ..|++++|++.+++.+...+..               ...+..+|||||||+|||++|+++|+.+.........+     
T Consensus        13 ~~f~diiGqe~iv~~L~~~i~~---------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~   77 (563)
T PRK06647         13 RDFNSLEGQDFVVETLKHSIES---------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS   77 (563)
T ss_pred             CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence            4799999999999988887441               12344589999999999999999999986432111111     


Q ss_pred             ------------EEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          234 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       234 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                  ++++++..      ...-..++.+.+.       +...|++|||+|.+..           .+++.|+
T Consensus        78 ~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naLL  140 (563)
T PRK06647         78 SCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNALL  140 (563)
T ss_pred             HHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHHH
Confidence                        22222211      0112344444432       2447999999999975           4568999


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..+++  ..+++|++++..  ..+   .+++++|+ ..++|.+++.+++..+++..+.+..           ..++++++
T Consensus       141 K~LEepp~~~vfI~~tte~--~kL---~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~eg-----------i~id~eAl  203 (563)
T PRK06647        141 KTIEEPPPYIVFIFATTEV--HKL---PATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQ-----------IKYEDEAL  203 (563)
T ss_pred             HhhccCCCCEEEEEecCCh--HHh---HHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence            99997  567777776432  333   67889998 6899999999999999998887642           33577888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++...       .|+.|.+.+.++++...
T Consensus       204 ~lLa~~s-------~GdlR~alslLdklis~  227 (563)
T PRK06647        204 KWIAYKS-------TGSVRDAYTLFDQVVSF  227 (563)
T ss_pred             HHHHHHc-------CCCHHHHHHHHHHHHhh
Confidence            8888765       67788899998877543

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.67  E-value=7.3e-16  Score=149.57  Aligned_cols=197  Identities=19%  Similarity=0.205  Sum_probs=148.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      +.|++++|++.+.+.|...+..-               +-....||.||.|||||++||.+|+.+++.......|+.++.
T Consensus        13 ~~F~evvGQe~v~~~L~nal~~~---------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~   77 (515)
T COG2812          13 KTFDDVVGQEHVVKTLSNALENG---------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI   77 (515)
T ss_pred             ccHHHhcccHHHHHHHHHHHHhC---------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence            57999999999999999874421               234568999999999999999999999865433334554443


Q ss_pred             ccc-ccc----------cccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-
Q 013706          239 RTD-LVG----------EFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-  299 (438)
Q Consensus       239 ~~~-~~~----------~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-  299 (438)
                      ... +..          ......-..++.+.++.       +..|++|||+|.|+.           .+.|.||.-+++ 
T Consensus        78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEEP  146 (515)
T COG2812          78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEEP  146 (515)
T ss_pred             hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhcccccC
Confidence            321 100          00111345677777765       348999999999986           566999999998 


Q ss_pred             -CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706          300 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  378 (438)
Q Consensus       300 -~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (438)
                       ..|++|+||+...-.     .+.+++|+ .++.|...+.+++...+..++.++.           ..++++++..+++.
T Consensus       147 P~hV~FIlATTe~~Ki-----p~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~-----------I~~e~~aL~~ia~~  209 (515)
T COG2812         147 PSHVKFILATTEPQKI-----PNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEG-----------INIEEDALSLIARA  209 (515)
T ss_pred             ccCeEEEEecCCcCcC-----chhhhhcc-ccccccCCCHHHHHHHHHHHHHhcC-----------CccCHHHHHHHHHH
Confidence             678888887654332     77889998 9999999999999999999999864           45677888888876


Q ss_pred             HhhHhhhccccccchHHHHHHHHHHhh
Q 013706          379 ETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       379 ~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      .       .|..|+..++++++.....
T Consensus       210 a-------~Gs~RDalslLDq~i~~~~  229 (515)
T COG2812         210 A-------EGSLRDALSLLDQAIAFGE  229 (515)
T ss_pred             c-------CCChhhHHHHHHHHHHccC
Confidence            5       5777999999999987643

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.67  E-value=1.9e-15  Score=152.41  Aligned_cols=194  Identities=19%  Similarity=0.247  Sum_probs=129.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC-CCCEEEe
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-TDRVTEV  237 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~  237 (438)
                      ..|++++|++.+++.++..+..               ...+..+||+||||||||++|+++|+.+....... ..++-.+
T Consensus        15 ~~f~dIiGQe~~v~~L~~aI~~---------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C   79 (725)
T PRK07133         15 KTFDDIVGQDHIVQTLKNIIKS---------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC   79 (725)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence            4799999999999988876431               11234469999999999999999999886532110 0111111


Q ss_pred             ec-----cccc-ccccc-cchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CC
Q 013706          238 QR-----TDLV-GEFVG-HTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GK  301 (438)
Q Consensus       238 ~~-----~~~~-~~~~g-~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~  301 (438)
                      ..     .+++ ..-.+ .....++.+++.+       ...|++|||+|.|..           .+.+.|+..|++  ..
T Consensus        80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEPP~~  148 (725)
T PRK07133         80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEPPKH  148 (725)
T ss_pred             HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcCCCc
Confidence            00     0110 00001 1123355555443       347999999999875           456899999987  45


Q ss_pred             EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhh
Q 013706          302 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT  381 (438)
Q Consensus       302 v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (438)
                      +++|++|+..  ..+   .|++++|+ .+++|.+++.+++...+...+.+..           ..++.+++..++...  
T Consensus       149 tifILaTte~--~KL---l~TI~SRc-q~ieF~~L~~eeI~~~L~~il~keg-----------I~id~eAl~~LA~lS--  209 (725)
T PRK07133        149 VIFILATTEV--HKI---PLTILSRV-QRFNFRRISEDEIVSRLEFILEKEN-----------ISYEKNALKLIAKLS--  209 (725)
T ss_pred             eEEEEEcCCh--hhh---hHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc--
Confidence            6777766432  233   67789998 7999999999999999998887642           234667777766654  


Q ss_pred             HhhhccccccchHHHHHHHHH
Q 013706          382 EKQRREMNGGLVDPMLVNARE  402 (438)
Q Consensus       382 ~~~~~~~n~~~l~~~~~~a~~  402 (438)
                           .|+.|.+.++++++..
T Consensus       210 -----~GslR~AlslLekl~~  225 (725)
T PRK07133        210 -----SGSLRDALSIAEQVSI  225 (725)
T ss_pred             -----CCCHHHHHHHHHHHHH
Confidence                 5777888888887653

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.67  E-value=1.6e-15  Score=143.60  Aligned_cols=179  Identities=20%  Similarity=0.204  Sum_probs=112.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++++|++.+++.+..++..               ...+..++|+||||+|||++|+++++.+..       .++.++
T Consensus        18 ~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~-------~~~~i~   75 (316)
T PHA02544         18 STIDECILPAADKETFKSIVKK---------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGA-------EVLFVN   75 (316)
T ss_pred             CcHHHhcCcHHHHHHHHHHHhc---------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------cceEec
Confidence            4789999999999998887431               123334555999999999999999997743       566777


Q ss_pred             cccccccccccchHHHHHHHHH----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHH
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK  314 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~  314 (438)
                      +++  +. +......+......    +...||||||+|.+...       .....+..++.... +...+|++++..  .
T Consensus        76 ~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------~~~~~L~~~le~~~-~~~~~Ilt~n~~--~  142 (316)
T PHA02544         76 GSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------DAQRHLRSFMEAYS-KNCSFIITANNK--N  142 (316)
T ss_pred             cCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-------HHHHHHHHHHHhcC-CCceEEEEcCCh--h
Confidence            665  11 11111112221111    24689999999988431       11233333333333 344555554432  2


Q ss_pred             HHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706          315 RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  380 (438)
Q Consensus       315 ~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (438)
                      .+   .|++++|| ..+.|+.|+.+++.++++.++........    .-...++++++..++...+
T Consensus       143 ~l---~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~----~~~~~i~~~al~~l~~~~~  200 (316)
T PHA02544        143 GI---IEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILE----AEGVEVDMKVLAALVKKNF  200 (316)
T ss_pred             hc---hHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhcC
Confidence            33   78899999 68999999999999888766554311000    1123457788888888765

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=3.2e-16  Score=146.44  Aligned_cols=173  Identities=14%  Similarity=0.253  Sum_probs=124.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|+.++-..++|+.|.+=+...   .++++.+.+.+..=.++.|||||||||||++.-|+|++|+.       .+..++
T Consensus       198 stF~TlaMd~~~K~~I~~Dl~~F---~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-------dIydLe  267 (457)
T KOG0743|consen  198 STFETLAMDPDLKERIIDDLDDF---IKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-------DIYDLE  267 (457)
T ss_pred             CCccccccChhHHHHHHHHHHHH---HhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-------ceEEee
Confidence            46777888888888877543322   24444455555555678999999999999999999999876       444444


Q ss_pred             cccccccccccchHHHHHHHHHccC-cEEEEeCcccccCCCC--CCC--c---hhHHHHHHHHHhhccC------CCEEE
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAEG-GILFVDEAYRLIPMQK--ADD--K---DYGIEALEEIMSVMDG------GKVVV  304 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~~-~il~iDEid~l~~~~~--~~~--~---~~~~~~~~~ll~~~~~------~~v~v  304 (438)
                      -++.     +... .++.++..+.+ +||+|.+||.-...+.  ...  .   ..+.-.++.||..+|+      +.-++
T Consensus       268 Lt~v-----~~n~-dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi  341 (457)
T KOG0743|consen  268 LTEV-----KLDS-DLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII  341 (457)
T ss_pred             eccc-----cCcH-HHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEE
Confidence            4333     2222 37888877765 9999999998865222  111  1   1233568899999997      35666


Q ss_pred             EEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhcc
Q 013706          305 IFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       305 i~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~  352 (438)
                      |++||-  .+++   ||||.|  |+|.+|+++.-+.++...++++|+.-.
T Consensus       342 vFTTNh--~EkL---DPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~  386 (457)
T KOG0743|consen  342 VFTTNH--KEKL---DPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE  386 (457)
T ss_pred             EEecCC--hhhc---CHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence            666443  3444   999999  999999999999999999999999763

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.67  E-value=2.3e-15  Score=147.32  Aligned_cols=188  Identities=18%  Similarity=0.214  Sum_probs=129.3

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  230 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--------  230 (438)
                      ..|++++|++.+++.+...+..               ...+..+|||||||+|||++|+++|+.+.......        
T Consensus        14 ~~~~diiGq~~~v~~L~~~i~~---------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c   78 (451)
T PRK06305         14 QTFSEILGQDAVVAVLKNALRF---------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC   78 (451)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence            5799999999999988876431               12345589999999999999999999886421110        


Q ss_pred             ----------CCCEEEeecccccccccccchHHHHHHHH-------HccCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706          231 ----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEI  293 (438)
Q Consensus       231 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l  293 (438)
                                ...++++++...    .|  -..++.+.+       .+...|+||||+|.+..           ...+.|
T Consensus        79 ~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~L  141 (451)
T PRK06305         79 ASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSL  141 (451)
T ss_pred             HHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHH
Confidence                      112333332211    11  122222221       13458999999999975           345899


Q ss_pred             HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706          294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  371 (438)
Q Consensus       294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  371 (438)
                      +..|++  +.+++|++++..  ..+   .+++++|+ ..++|++++.+++...+...+++..           ..++.++
T Consensus       142 Lk~lEep~~~~~~Il~t~~~--~kl---~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg-----------~~i~~~a  204 (451)
T PRK06305        142 LKTLEEPPQHVKFFLATTEI--HKI---PGTILSRC-QKMHLKRIPEETIIDKLALIAKQEG-----------IETSREA  204 (451)
T ss_pred             HHHhhcCCCCceEEEEeCCh--Hhc---chHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence            999987  566666665332  333   67889998 7899999999999999998887642           3357778


Q ss_pred             HHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706          372 IAALIEKETTEKQRREMNGGLVDPMLVNARE  402 (438)
Q Consensus       372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~  402 (438)
                      +..++...       .|+.|.+.+.++....
T Consensus       205 l~~L~~~s-------~gdlr~a~~~Lekl~~  228 (451)
T PRK06305        205 LLPIARAA-------QGSLRDAESLYDYVVG  228 (451)
T ss_pred             HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence            88888765       5677778888776553

>PHA02730 ankyrin-like protein; Provisional

Probab=99.67  E-value=3.9e-16  Score=156.06  Aligned_cols=131  Identities=21%  Similarity=0.131  Sum_probs=115.1

Q ss_pred             CCCCcHHHHHHHcC---CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcC--CHHHHHHHHHCCC--CcccccCCC
Q 013706            2 QMAQTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG--CNEAAKLLLAHGA--FIEAKANNG   74 (438)
Q Consensus         2 ~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~--~~~~~~~~g   74 (438)
                      +.|+||||+|+..|   +.++|++|++    +|++++.+|..|+||||+|+..+  +.+++++|++.|+  +++..+.-+
T Consensus        39 ~~G~TaLh~A~~~~~~~~~eivklLLs----~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~  114 (672)
T PHA02730         39 RRGNNALHCYVSNKCDTDIKIVRLLLS----RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIN  114 (672)
T ss_pred             CCCCcHHHHHHHcCCcCcHHHHHHHHh----CCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccC
Confidence            57999999999997   5999999999    79999999999999999999976  7999999999965  557788889


Q ss_pred             CcHHHHHhhcccccCcHHHHHHHHh-CCCCCcccCC-----CCCccccccccCCCchhHHHHHHhccchHH
Q 013706           75 MTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDN-----EGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        75 ~t~L~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~-----~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      .+|||.++.  ..+++.+++++|+. .+++++....     +|.+|+ +++...+..+++++|+..|++..
T Consensus       115 d~~l~~y~~--s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~-yl~~~~~~~eIvklLi~~g~~v~  182 (672)
T PHA02730        115 DFDLYSYMS--SDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDI-YVTTPNPRPEVLLWLLKSECYST  182 (672)
T ss_pred             CchHHHHHH--hcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhh-hHhcCCCchHHHHHHHHcCCccc
Confidence            999999883  24899999999996 6788886643     789999 88888999999999999998863

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=2.2e-15  Score=146.52  Aligned_cols=211  Identities=18%  Similarity=0.145  Sum_probs=147.9

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc---cCcEEEEeCccc
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYR  273 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~  273 (438)
                      ..+.++||+||+|+|||.|++++++++....   -..+..++|+.+.++.+....+-+..+|.++   .++||+||++|.
T Consensus       429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~---~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~  505 (952)
T KOG0735|consen  429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDL---IAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDC  505 (952)
T ss_pred             cccccEEEeCCCCCCHhHHHHHHHHHhcccc---ceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence            3567899999999999999999999886422   2356677888887766666666777778776   579999999999


Q ss_pred             ccCCCC--CCCchhHHHHHHHHHhhc-----c-CCCEEEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHH
Q 013706          274 LIPMQK--ADDKDYGIEALEEIMSVM-----D-GGKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAK  343 (438)
Q Consensus       274 l~~~~~--~~~~~~~~~~~~~ll~~~-----~-~~~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~  343 (438)
                      +.....  +++.......+..++..+     . +..+.||+++..  ...+   +|-|.+  +|+.++.++.|...+|.+
T Consensus       506 l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe--~qtl---~~~L~s~~~Fq~~~~L~ap~~~~R~~  580 (952)
T KOG0735|consen  506 LASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQE--LQTL---NPLLVSPLLFQIVIALPAPAVTRRKE  580 (952)
T ss_pred             hhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechh--hhhc---ChhhcCccceEEEEecCCcchhHHHH
Confidence            987322  223333334444444332     2 244677777432  3333   665554  889999999999999999


Q ss_pred             HHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh-ccccCCCCChhhhhhcc
Q 013706          344 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDTDELRTIT  422 (438)
Q Consensus       344 il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~-~r~~~~~~~~~~~~~i~  422 (438)
                      ||+..+.+..           ..+..+.+.-+...+-      +....++.-.+++|...+. .|++..      ...+|
T Consensus       581 IL~~~~s~~~-----------~~~~~~dLd~ls~~TE------Gy~~~DL~ifVeRai~~a~leris~~------~kllt  637 (952)
T KOG0735|consen  581 ILTTIFSKNL-----------SDITMDDLDFLSVKTE------GYLATDLVIFVERAIHEAFLERISNG------PKLLT  637 (952)
T ss_pred             HHHHHHHhhh-----------hhhhhHHHHHHHHhcC------CccchhHHHHHHHHHHHHHHHHhccC------cccch
Confidence            9999998743           2234444554444443      4446788999999987764 444422      13799


Q ss_pred             HHHHHHHHHHHHhcCC
Q 013706          423 LEDLEAGLKLLLRLGI  438 (438)
Q Consensus       423 ~~d~~~a~~~~~~~~~  438 (438)
                      .+||.++++.+-|+++
T Consensus       638 ke~f~ksL~~F~P~aL  653 (952)
T KOG0735|consen  638 KELFEKSLKDFVPLAL  653 (952)
T ss_pred             HHHHHHHHHhcChHHh
Confidence            9999999999998753

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.66  E-value=3.4e-15  Score=157.25  Aligned_cols=222  Identities=17%  Similarity=0.286  Sum_probs=151.2

Q ss_pred             HHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCE
Q 013706          156 ELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  234 (438)
Q Consensus       156 ~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~  234 (438)
                      .+...+ +.++|++.+++.+...+....       .+.....++...+||+||||||||++|+++|+.++..    ..++
T Consensus       502 ~l~~~L~~~v~GQ~~ai~~l~~~i~~~~-------~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~----~~~~  570 (821)
T CHL00095        502 HMEETLHKRIIGQDEAVVAVSKAIRRAR-------VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS----EDAM  570 (821)
T ss_pred             HHHHHhcCcCcChHHHHHHHHHHHHHHh-------hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC----ccce
Confidence            344444 458899998888877654322       2222222233458999999999999999999988532    2366


Q ss_pred             EEeecccccc------------cccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-
Q 013706          235 TEVQRTDLVG------------EFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-  300 (438)
Q Consensus       235 ~~~~~~~~~~------------~~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-  300 (438)
                      +.++.+++..            .|+|..+ ..+...+.....+||||||+|++.+           .+.+.|++.|+++ 
T Consensus       571 ~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~-----------~v~~~Llq~le~g~  639 (821)
T CHL00095        571 IRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP-----------DIFNLLLQILDDGR  639 (821)
T ss_pred             EEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH-----------HHHHHHHHHhccCc
Confidence            7776655421            2455433 3466666766779999999999987           5669999999863 


Q ss_pred             ------------CEEEEEecCChhH-----------------------HHH---h------hhCcCccCCCCcceeCCCC
Q 013706          301 ------------KVVVIFAGYSEPM-----------------------KRV---I------ASNEGFCRRVTKFFHFNDF  336 (438)
Q Consensus       301 ------------~v~vi~~~~~~~~-----------------------~~~---~------~~~p~l~~R~~~~i~~~~~  336 (438)
                                  +.++|++++-..-                       ..+   .      .-.|+|++|+|.+|.|.++
T Consensus       640 ~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL  719 (821)
T CHL00095        640 LTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQL  719 (821)
T ss_pred             eecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCC
Confidence                        3467777652110                       000   0      0137899999999999999


Q ss_pred             CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706          337 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       337 ~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      +.+++.+|+...+.+...+....  .+...++++++..++...+  +  ....+|.|+.++++.+....
T Consensus       720 ~~~~l~~Iv~~~l~~l~~rl~~~--~i~l~~~~~~~~~La~~~~--~--~~~GAR~l~r~i~~~i~~~l  782 (821)
T CHL00095        720 TKNDVWEIAEIMLKNLFKRLNEQ--GIQLEVTERIKTLLIEEGY--N--PLYGARPLRRAIMRLLEDPL  782 (821)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHC--CcEEEECHHHHHHHHHhcC--C--CCCChhhHHHHHHHHHHHHH
Confidence            99999999999998765443322  3446678899998888633  1  13446889888888776543

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.66  E-value=9.3e-16  Score=148.69  Aligned_cols=189  Identities=16%  Similarity=0.230  Sum_probs=128.5

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  230 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--------  230 (438)
                      ..|++++|++.+++.|...+..               ...+..+||+||||||||++|+++|+.+.......        
T Consensus        13 ~~~~eiiGq~~~~~~L~~~~~~---------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~   77 (397)
T PRK14955         13 KKFADITAQEHITRTIQNSLRM---------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV   77 (397)
T ss_pred             CcHhhccChHHHHHHHHHHHHh---------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence            4689999999999988876431               12334599999999999999999999996522100        


Q ss_pred             CCC-----------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhH
Q 013706          231 TDR-----------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYG  286 (438)
Q Consensus       231 ~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~  286 (438)
                      ..+                 ++++++.+.      .....++.+.+..       ...|+||||+|.+..          
T Consensus        78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----------  141 (397)
T PRK14955         78 TEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----------  141 (397)
T ss_pred             CCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------
Confidence            011                 222222110      0123444444333       347999999999975          


Q ss_pred             HHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 013706          287 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH  364 (438)
Q Consensus       287 ~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~  364 (438)
                       ...+.|+..+++  ...++|++++.  ...+   .+++++|+ ..++|++++.+++...+...+++..           
T Consensus       142 -~~~~~LLk~LEep~~~t~~Il~t~~--~~kl---~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g-----------  203 (397)
T PRK14955        142 -AAFNAFLKTLEEPPPHAIFIFATTE--LHKI---PATIASRC-QRFNFKRIPLEEIQQQLQGICEAEG-----------  203 (397)
T ss_pred             -HHHHHHHHHHhcCCCCeEEEEEeCC--hHHh---HHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcC-----------
Confidence             334788888887  34555555433  2333   56788888 6899999999999999998887642           


Q ss_pred             ccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          365 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++++++..++...       .|+.+.+.+.++++...
T Consensus       204 ~~i~~~al~~l~~~s-------~g~lr~a~~~L~kl~~~  235 (397)
T PRK14955        204 ISVDADALQLIGRKA-------QGSMRDAQSILDQVIAF  235 (397)
T ss_pred             CCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence            346778888887765       57778888888776544

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.66  E-value=7.1e-15  Score=132.24  Aligned_cols=189  Identities=13%  Similarity=0.175  Sum_probs=123.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM  277 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~  277 (438)
                      ...+++|+||||||||.+++++++.+...+.    .+..++...... +    .....+.++.  ..+|||||++.+..+
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~----~v~y~~~~~~~~-~----~~~~~~~~~~--~dlliiDdi~~~~~~  112 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQRGR----AVGYVPLDKRAW-F----VPEVLEGMEQ--LSLVCIDNIECIAGD  112 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhCCC----eEEEEEHHHHhh-h----hHHHHHHhhh--CCEEEEeChhhhcCC
Confidence            3458999999999999999999998865331    233333322211 0    1112222222  258999999998653


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706          278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED  355 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~  355 (438)
                      .+     ....+.+.+...++.++..+|++++..+.. +-...|.|++|+  ..++++.+|+.+++.+++++.....   
T Consensus       113 ~~-----~~~~lf~l~n~~~e~g~~~li~ts~~~p~~-l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~---  183 (235)
T PRK08084        113 EL-----WEMAIFDLYNRILESGRTRLLITGDRPPRQ-LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR---  183 (235)
T ss_pred             HH-----HHHHHHHHHHHHHHcCCCeEEEeCCCChHH-cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc---
Confidence            21     122344555555666665566666544433 212379999999  4899999999999999998766543   


Q ss_pred             cccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                          |    ..++++++..++++.       .++.|.+.+++++..+.+   +       ...+.||.+.+++++.
T Consensus       184 ----~----~~l~~~v~~~L~~~~-------~~d~r~l~~~l~~l~~~~---l-------~~~~~it~~~~k~~l~  234 (235)
T PRK08084        184 ----G----FELPEDVGRFLLKRL-------DREMRTLFMTLDQLDRAS---I-------TAQRKLTIPFVKEILK  234 (235)
T ss_pred             ----C----CCCCHHHHHHHHHhh-------cCCHHHHHHHHHHHHHHH---H-------hcCCCCCHHHHHHHHc
Confidence                2    346788999999887       688999999999864332   0       1123477777776653

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.66  E-value=2.6e-15  Score=147.78  Aligned_cols=188  Identities=20%  Similarity=0.258  Sum_probs=128.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC----
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDR----  233 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~----  233 (438)
                      ..|++++|++.+.+.+...+..                ...+| +|||||||+|||++|+.+|+.+.........+    
T Consensus        13 ~~f~diiGq~~i~~~L~~~i~~----------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c   76 (486)
T PRK14953         13 KFFKEVIGQEIVVRILKNAVKL----------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC   76 (486)
T ss_pred             CcHHHccChHHHHHHHHHHHHc----------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence            4789999999999988876431                23344 68999999999999999999886421111111    


Q ss_pred             -------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706          234 -------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI  293 (438)
Q Consensus       234 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l  293 (438)
                                   +++++++.-      ..-..++.+.+.+       ...|+||||+|.+..           ...+.|
T Consensus        77 ~nc~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naL  139 (486)
T PRK14953         77 ENCVEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNAL  139 (486)
T ss_pred             HHHHHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHH
Confidence                         222222110      1112234433332       347999999998864           345889


Q ss_pred             HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706          294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  371 (438)
Q Consensus       294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  371 (438)
                      +..+++  ..+++|++++.  ...+   .+++++|+ ..+.|++++.+++..++...+++..           ..+++++
T Consensus       140 Lk~LEepp~~~v~Il~tt~--~~kl---~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~eg-----------i~id~~a  202 (486)
T PRK14953        140 LKTLEEPPPRTIFILCTTE--YDKI---PPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEK-----------IEYEEKA  202 (486)
T ss_pred             HHHHhcCCCCeEEEEEECC--HHHH---HHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence            999987  35566665543  2233   56788888 6899999999999999999888642           2456778


Q ss_pred             HHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          372 IAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      +..++...       .|+.|.+.+.++.+...
T Consensus       203 l~~La~~s-------~G~lr~al~~Ldkl~~~  227 (486)
T PRK14953        203 LDLLAQAS-------EGGMRDAASLLDQASTY  227 (486)
T ss_pred             HHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence            87777654       67888888998887644

>PHA02730 ankyrin-like protein; Provisional

Probab=99.66  E-value=4.1e-16  Score=155.87  Aligned_cols=127  Identities=20%  Similarity=0.171  Sum_probs=106.0

Q ss_pred             CCCcHHHHHHHcCC----HHHHHHHhcCCCCCCc--ccccccCCCChHHHH---HHHcC---------CHHHHHHHHHCC
Q 013706            3 MAQTPLHVSAGYNK----AEIVKSLLEWPGNDKV--ELEAQNMYGETPLHM---AAKNG---------CNEAAKLLLAHG   64 (438)
Q Consensus         3 ~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~--~~~~~d~~g~t~L~~---A~~~g---------~~~~v~~Ll~~g   64 (438)
                      .|+||||+|+..++    .+++++|++    .|+  ++|.+|..|.||||.   |...+         ..+++++|+.+|
T Consensus       377 ~G~TpLH~Aa~~nnn~i~~eIvelLIs----~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G  452 (672)
T PHA02730        377 DNNYPLHDYFVNNNNIVDVNVVRFIVE----NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM  452 (672)
T ss_pred             CCCcHHHHHHHHcCCcchHHHHHHHHH----cCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc
Confidence            68999999998875    899999998    454  689999999999984   33232         135689999999


Q ss_pred             CCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCC-CCCccccccccC-CCchhHHHHHHhccch
Q 013706           65 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHLSNG-PGSAKLRELLLWHSEE  137 (438)
Q Consensus        65 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~-~g~t~l~~~a~~-~~~~~~~~lL~~~~~~  137 (438)
                      +++|.+|..|.||||+|+    ..++.+++++|+.+|++++.+|. .|.||+++++.. .++.+++++|+..++.
T Consensus       453 ADINakD~~G~TPLh~Aa----~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~  523 (672)
T PHA02730        453 DDIDMIDNENKTLLYYAV----DVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPT  523 (672)
T ss_pred             cchhccCCCCCCHHHHHH----HhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCC
Confidence            999999999999999999    77899999999999999999997 599999665542 3578899999887754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.66  E-value=1.8e-16  Score=164.67  Aligned_cols=130  Identities=34%  Similarity=0.448  Sum_probs=114.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCC-----------------------------CCcccccccCCCChHHHHHHHcCC
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGN-----------------------------DKVELEAQNMYGETPLHMAAKNGC   53 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~-----------------------------~~~~~~~~d~~g~t~L~~A~~~g~   53 (438)
                      .|.||||.|+..||.++++.|++....                             +|++++.++..|.||||.||..|+
T Consensus       473 ~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~  552 (1143)
T KOG4177|consen  473 QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGN  552 (1143)
T ss_pred             ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCC
Confidence            678888888888888888877763211                             578899999999999999999999


Q ss_pred             HHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706           54 NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW  133 (438)
Q Consensus        54 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~  133 (438)
                      .++|++|+++|+|++.+++.|+||||.||    ..|+.+++.+|+++|+++|..|.+|.||| +.+...+...++.++..
T Consensus       553 v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa----~~G~~~i~~LLlk~GA~vna~d~~g~TpL-~iA~~lg~~~~~k~l~~  627 (1143)
T KOG4177|consen  553 VDLVKFLLEHGADVNAKDKLGYTPLHQAA----QQGHNDIAELLLKHGASVNAADLDGFTPL-HIAVRLGYLSVVKLLKV  627 (1143)
T ss_pred             chHHHHhhhCCccccccCCCCCChhhHHH----HcChHHHHHHHHHcCCCCCcccccCcchh-HHHHHhcccchhhHHHh
Confidence            99999999999999999999999999999    88999999999999999999999999999 66777788888888887


Q ss_pred             ccch
Q 013706          134 HSEE  137 (438)
Q Consensus       134 ~~~~  137 (438)
                      .+..
T Consensus       628 ~~~~  631 (1143)
T KOG4177|consen  628 VTAT  631 (1143)
T ss_pred             ccCc
Confidence            7665

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.65  E-value=4e-15  Score=143.62  Aligned_cols=189  Identities=17%  Similarity=0.225  Sum_probs=130.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-----CC
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----DR  233 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-----~~  233 (438)
                      ..|++++|++.+++.+.+.+..               ...+.++|||||||+|||++|+++++.+...+....     ..
T Consensus        14 ~~~~~iig~~~~~~~l~~~i~~---------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~   78 (367)
T PRK14970         14 QTFDDVVGQSHITNTLLNAIEN---------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN   78 (367)
T ss_pred             CcHHhcCCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence            4689999999998888876431               124568999999999999999999998865332111     11


Q ss_pred             EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEE
Q 013706          234 VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVV  304 (438)
Q Consensus       234 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~v  304 (438)
                      +++++...      ......++.+++++       ...|+||||+|.+..           ..++.|+..+++  ...++
T Consensus        79 ~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~~~~~~~  141 (367)
T PRK14970         79 IFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEPPAHAIF  141 (367)
T ss_pred             eEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCCCCceEE
Confidence            22222111      11224555666543       236999999998864           345788888876  33444


Q ss_pred             EEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706          305 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  384 (438)
Q Consensus       305 i~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (438)
                      |++++..  ..+   .|++.+|+ ..++|++|+.+++..++...+.+..           ..++++++..++...     
T Consensus       142 Il~~~~~--~kl---~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~al~~l~~~~-----  199 (367)
T PRK14970        142 ILATTEK--HKI---IPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEG-----------IKFEDDALHIIAQKA-----  199 (367)
T ss_pred             EEEeCCc--ccC---CHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHhC-----
Confidence            4444322  222   67888898 6799999999999999998887642           345778888888764     


Q ss_pred             hccccccchHHHHHHHHHH
Q 013706          385 RREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       385 ~~~~n~~~l~~~~~~a~~~  403 (438)
                        .|+.|.+.+.+++....
T Consensus       200 --~gdlr~~~~~lekl~~y  216 (367)
T PRK14970        200 --DGALRDALSIFDRVVTF  216 (367)
T ss_pred             --CCCHHHHHHHHHHHHHh
Confidence              57778888888877643

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.65  E-value=1.3e-15  Score=144.62  Aligned_cols=188  Identities=27%  Similarity=0.324  Sum_probs=123.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.+..++.                ....++++|+||||||||++++++++.+...+.  ...+++++
T Consensus        14 ~~~~~~~g~~~~~~~l~~~i~----------------~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~--~~~~i~~~   75 (319)
T PRK00440         14 RTLDEIVGQEEIVERLKSYVK----------------EKNMPHLLFAGPPGTGKTTAALALARELYGEDW--RENFLELN   75 (319)
T ss_pred             CcHHHhcCcHHHHHHHHHHHh----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc--ccceEEec
Confidence            468889999999988887743                123457999999999999999999998854332  23455665


Q ss_pred             cccccccccccchHHHHHHHHH-----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec-CC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKE-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YS  310 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~-----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~-~~  310 (438)
                      +++..+..  .....+......     +...+|+|||+|.+....           .+.|+..++.  ....+|+++ +.
T Consensus        76 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~-----------~~~L~~~le~~~~~~~lIl~~~~~  142 (319)
T PRK00440         76 ASDERGID--VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA-----------QQALRRTMEMYSQNTRFILSCNYS  142 (319)
T ss_pred             cccccchH--HHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH-----------HHHHHHHHhcCCCCCeEEEEeCCc
Confidence            44321100  000111111111     224699999999986422           2556666653  233344443 33


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      ..+      .+++.+|+ ..++|++++.+++..++..++.+..           ..++++++..++...       .|+.
T Consensus       143 ~~l------~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~-----------~~i~~~al~~l~~~~-------~gd~  197 (319)
T PRK00440        143 SKI------IDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEG-----------IEITDDALEAIYYVS-------EGDM  197 (319)
T ss_pred             ccc------chhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------CCCH
Confidence            222      45678888 5799999999999999999888642           346778888887754       5777


Q ss_pred             cchHHHHHHHHH
Q 013706          391 GLVDPMLVNARE  402 (438)
Q Consensus       391 ~~l~~~~~~a~~  402 (438)
                      |.+.+.++.+..
T Consensus       198 r~~~~~l~~~~~  209 (319)
T PRK00440        198 RKAINALQAAAA  209 (319)
T ss_pred             HHHHHHHHHHHH
Confidence            888888876654

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.65  E-value=3.8e-15  Score=156.16  Aligned_cols=224  Identities=17%  Similarity=0.263  Sum_probs=150.2

Q ss_pred             HHHHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706          154 MDELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  232 (438)
Q Consensus       154 ~~~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~  232 (438)
                      +..+...+ ..++|++.+.+.+.+.+...       ..+...+.++...+||.||||||||.+|+++|+.++..    ..
T Consensus       557 l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~-------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~----~~  625 (852)
T TIGR03345       557 VLSLPDRLAERVIGQDHALEAIAERIRTA-------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG----EQ  625 (852)
T ss_pred             HHHHHHHhcCeEcChHHHHHHHHHHHHHH-------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC----Cc
Confidence            34444555 46889999888888775432       22332222233358999999999999999999988532    23


Q ss_pred             CEEEeeccccc---------c---cccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC
Q 013706          233 RVTEVQRTDLV---------G---EFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG  299 (438)
Q Consensus       233 ~~~~~~~~~~~---------~---~~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~  299 (438)
                      .++.++.+++.         +   .|+|+.+ ..+...+.....+||+||||+++.+           .+.+.|++.+++
T Consensus       626 ~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~-----------~v~~~Llq~ld~  694 (852)
T TIGR03345       626 NLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHP-----------DVLELFYQVFDK  694 (852)
T ss_pred             ceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCH-----------HHHHHHHHHhhc
Confidence            66677765432         2   2555432 3455667777789999999998886           556889999875


Q ss_pred             C-------------CEEEEEecCChhH---------------HHH---h------hhCcCccCCCCcceeCCCCCHHHHH
Q 013706          300 G-------------KVVVIFAGYSEPM---------------KRV---I------ASNEGFCRRVTKFFHFNDFNSEELA  342 (438)
Q Consensus       300 ~-------------~v~vi~~~~~~~~---------------~~~---~------~~~p~l~~R~~~~i~~~~~~~~e~~  342 (438)
                      +             +.++|+++|-..-               +.+   .      .-.|+|++|++ +|.|.+++.+++.
T Consensus       695 g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~  773 (852)
T TIGR03345       695 GVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLA  773 (852)
T ss_pred             ceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHH
Confidence            3             3467776542110               000   0      01489999996 8999999999999


Q ss_pred             HHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706          343 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       343 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      +|+...+.+...+... .+.+...++++++..++...+.    ....+|.+++++++-.....
T Consensus       774 ~Iv~~~L~~l~~rl~~-~~gi~l~i~d~a~~~La~~g~~----~~~GAR~L~r~Ie~~i~~~l  831 (852)
T TIGR03345       774 AIVRLKLDRIARRLKE-NHGAELVYSEALVEHIVARCTE----VESGARNIDAILNQTLLPEL  831 (852)
T ss_pred             HHHHHHHHHHHHHHHH-hcCceEEECHHHHHHHHHHcCC----CCCChHHHHHHHHHHHHHHH
Confidence            9999998875433211 1134456788999999887641    12357889999888666543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK06893 DNA replication initiation factor; Validated

Probab=99.65  E-value=7.7e-15  Score=131.59  Aligned_cols=184  Identities=13%  Similarity=0.184  Sum_probs=117.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc-CcEEEEeCcccccCCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPMQ  278 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~il~iDEid~l~~~~  278 (438)
                      +.++||||||||||.+++++|+++...+.  +..++..+....          ...+.++... ..+|+|||++.+....
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~--~~~y~~~~~~~~----------~~~~~~~~~~~~dlLilDDi~~~~~~~  107 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQR--TAIYIPLSKSQY----------FSPAVLENLEQQDLVCLDDLQAVIGNE  107 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCC--CeEEeeHHHhhh----------hhHHHHhhcccCCEEEEeChhhhcCCh
Confidence            46899999999999999999998865432  122333221111          1113334333 4699999999987533


Q ss_pred             CCCCchhHHHHHHHHHh-hccCCCEEEEE-ecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcccc
Q 013706          279 KADDKDYGIEALEEIMS-VMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTE  354 (438)
Q Consensus       279 ~~~~~~~~~~~~~~ll~-~~~~~~v~vi~-~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~  354 (438)
                      +      ....+-.++. ..+.+..++|+ ++........  ..|.|++|+  +..+++++|+.+++.+|+++...... 
T Consensus       108 ~------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~--~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-  178 (229)
T PRK06893        108 E------WELAIFDLFNRIKEQGKTLLLISADCSPHALSI--KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-  178 (229)
T ss_pred             H------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc--cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-
Confidence            2      1122333333 33444444444 4333332222  258899987  56899999999999999998886532 


Q ss_pred             ccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          355 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                                ..++++++..++.+.       .++.|.+.+++++..+.+          ..+.+.||...+++.+.
T Consensus       179 ----------l~l~~~v~~~L~~~~-------~~d~r~l~~~l~~l~~~~----------~~~~~~it~~~v~~~L~  228 (229)
T PRK06893        179 ----------IELSDEVANFLLKRL-------DRDMHTLFDALDLLDKAS----------LQAQRKLTIPFVKEILG  228 (229)
T ss_pred             ----------CCCCHHHHHHHHHhc-------cCCHHHHHHHHHHHHHHH----------HhcCCCCCHHHHHHHhc
Confidence                      456788888888876       678889999988764322          01124588888877653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.65  E-value=4.3e-16  Score=148.68  Aligned_cols=130  Identities=16%  Similarity=0.057  Sum_probs=113.0

Q ss_pred             CCCCcHHHHHHH--cCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccc------cCC
Q 013706            2 QMAQTPLHVSAG--YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK------ANN   73 (438)
Q Consensus         2 ~~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~   73 (438)
                      ..++|+||+++.  .|+.++|++|++    +|++++..  .+.||||.|+..++.+++++|+++|++..-.      +..
T Consensus       114 ~~~~~~L~~~~~n~~n~~eiV~~LI~----~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        114 NSVQDLLLYYLSNAYVEIDIVDFMVD----HGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             ccccHHHHHHHHhcCCCHHHHHHHHH----CCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence            457999999999  899999999999    79999885  4589999999999999999999999854222      234


Q ss_pred             CCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706           74 GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus        74 g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                      +.|++|.|+    ..++.+++++|+.+|++++.+|..|.||| |.|+..++.+++++|+..|++...+.
T Consensus       188 ~~t~l~~a~----~~~~~eIve~LIs~GADIN~kD~~G~TpL-h~Aa~~g~~eiVelLL~~GAdIN~~d  251 (437)
T PHA02795        188 QYTRGFLVD----EPTVLEIYKLCIPYIEDINQLDAGGRTLL-YRAIYAGYIDLVSWLLENGANVNAVM  251 (437)
T ss_pred             ccchhHHHH----hcCHHHHHHHHHhCcCCcCcCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            778999888    78899999999999999999999999999 66666889999999999998876554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.65  E-value=3.4e-16  Score=131.95  Aligned_cols=96  Identities=24%  Similarity=0.333  Sum_probs=88.2

Q ss_pred             CCCCcHHHHHHHcCCHH---HHHHHhcCCCCCCcccccccC-CCChHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCc
Q 013706            2 QMAQTPLHVSAGYNKAE---IVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMT   76 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~---~v~~Ll~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t   76 (438)
                      ..|+||||+|+..|+.+   ++++|++    .|++++.++. .|+||||+|+..|+.+++++|+. .|++++.+|..|.|
T Consensus        53 ~~g~t~Lh~a~~~~~~~~~e~v~~Ll~----~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t  128 (154)
T PHA02736         53 RHGKQCVHIVSNPDKADPQEKLKLLME----WGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT  128 (154)
T ss_pred             CCCCEEEEeecccCchhHHHHHHHHHH----cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence            36999999999999874   6889998    6899999984 89999999999999999999997 59999999999999


Q ss_pred             HHHHHhhcccccCcHHHHHHHHhCCCCCc
Q 013706           77 PLHLSVWYSIRSEDYATVKTLLEYNADCS  105 (438)
Q Consensus        77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~  105 (438)
                      |||+|+    ..++.+++++|+.+|++++
T Consensus       129 pL~~A~----~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        129 PYYVAC----ERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHH----HcCCHHHHHHHHHcCCCCC
Confidence            999999    7899999999999998875

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.65  E-value=3.1e-15  Score=157.35  Aligned_cols=226  Identities=18%  Similarity=0.279  Sum_probs=149.3

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      +.++|++.+.+.+...+....       .+...+..+...+||+||||||||++|++||+.+...    ..+++.+++++
T Consensus       568 ~~viGQ~~ai~~l~~~i~~~~-------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~----~~~~i~id~se  636 (857)
T PRK10865        568 HRVIGQNEAVEAVSNAIRRSR-------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS----DDAMVRIDMSE  636 (857)
T ss_pred             CeEeCCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC----CCcEEEEEhHH
Confidence            357899998888887655332       1111112223468999999999999999999987532    23677777765


Q ss_pred             ccc-----c-------ccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-------
Q 013706          242 LVG-----E-------FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------  301 (438)
Q Consensus       242 ~~~-----~-------~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------  301 (438)
                      +..     .       |+|... ..+...+....++||||||++++.+           .+.+.|++.++++.       
T Consensus       637 ~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-----------~v~~~Ll~ile~g~l~d~~gr  705 (857)
T PRK10865        637 FMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-----------DVFNILLQVLDDGRLTDGQGR  705 (857)
T ss_pred             hhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-----------HHHHHHHHHHhhCceecCCce
Confidence            432     1       233322 2344555555679999999999886           45588998887532       


Q ss_pred             ------EEEEEecCCh--hH------------HH----Hh--hhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706          302 ------VVVIFAGYSE--PM------------KR----VI--ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED  355 (438)
Q Consensus       302 ------v~vi~~~~~~--~~------------~~----~~--~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~  355 (438)
                            .++|++++..  .+            ..    ..  .-.|+|+.|++.++.|.+++.+++.+|++.++.+...+
T Consensus       706 ~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~r  785 (857)
T PRK10865        706 TVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKR  785 (857)
T ss_pred             EEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence                  2466666541  10            00    00  11488999999999999999999999999999875432


Q ss_pred             cccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh-ccccCCCCCh
Q 013706          356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDT  415 (438)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~-~r~~~~~~~~  415 (438)
                      ....+  +...++++++..++.+.+  +  ...++|.++.++++-+.... ..+-.+....
T Consensus       786 l~~~g--i~l~is~~al~~L~~~gy--~--~~~GARpL~r~I~~~i~~~la~~iL~g~~~~  840 (857)
T PRK10865        786 LEERG--YEIHISDEALKLLSENGY--D--PVYGARPLKRAIQQQIENPLAQQILSGELVP  840 (857)
T ss_pred             HHhCC--CcCcCCHHHHHHHHHcCC--C--ccCChHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence            22223  345689999999988654  1  13457899999988877643 3343343333

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.64  E-value=9.1e-17  Score=137.44  Aligned_cols=152  Identities=26%  Similarity=0.336  Sum_probs=75.0

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC-----------
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI-----------  228 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~-----------  228 (438)
                      +|.+|+|++.+|..+.-...                  ...|+||+||||||||++|+.++..|.....           
T Consensus         1 Df~dI~GQe~aKrAL~iAAa------------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s   62 (206)
T PF01078_consen    1 DFSDIVGQEEAKRALEIAAA------------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYS   62 (206)
T ss_dssp             -TCCSSSTHHHHHHHHHHHH------------------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-T
T ss_pred             ChhhhcCcHHHHHHHHHHHc------------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccc
Confidence            47899999999998885421                  3469999999999999999999987621110           


Q ss_pred             ----------cCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706          229 ----------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  298 (438)
Q Consensus       229 ----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  298 (438)
                                ....+|.....+.-....+|-........+..|.+||||+||+-.+.           ..+++.|++.|+
T Consensus        63 ~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~-----------~~vld~Lr~ple  131 (206)
T PF01078_consen   63 VAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFD-----------RSVLDALRQPLE  131 (206)
T ss_dssp             T---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS------------HHHHHHHHHHHH
T ss_pred             cccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcC-----------HHHHHHHHHHHH
Confidence                      11122333222222222333322222335678899999999995554           489999999998


Q ss_pred             CC---------------CEEEEEecCChhHHHHhh-------h-----------CcCccCCCCcceeCCCCCHHH
Q 013706          299 GG---------------KVVVIFAGYSEPMKRVIA-------S-----------NEGFCRRVTKFFHFNDFNSEE  340 (438)
Q Consensus       299 ~~---------------~v~vi~~~~~~~~~~~~~-------~-----------~p~l~~R~~~~i~~~~~~~~e  340 (438)
                      ++               ++.+|+|.|+.+=-....       .           .-++++|||..+.++..+.+|
T Consensus       132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~  206 (206)
T PF01078_consen  132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE  206 (206)
T ss_dssp             HSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred             CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            75               347788876544322210       0           135677777777777766543

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=99.64  E-value=9.6e-16  Score=130.18  Aligned_cols=189  Identities=22%  Similarity=0.241  Sum_probs=127.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+.+|+|.++..+.+.-+.+                ....+|++|.||||||||+-+.++|++|  .|......+++++
T Consensus        24 ~~l~dIVGNe~tv~rl~via~----------------~gnmP~liisGpPG~GKTTsi~~LAr~L--LG~~~ke~vLELN   85 (333)
T KOG0991|consen   24 SVLQDIVGNEDTVERLSVIAK----------------EGNMPNLIISGPPGTGKTTSILCLAREL--LGDSYKEAVLELN   85 (333)
T ss_pred             hHHHHhhCCHHHHHHHHHHHH----------------cCCCCceEeeCCCCCchhhHHHHHHHHH--hChhhhhHhhhcc
Confidence            468999999999998887643                2467899999999999999999999988  3433455778899


Q ss_pred             cccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  311 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~  311 (438)
                      +++-.+-.+-   .+.-+.|.+.       +..|+++||+|++....|        +++..-.+...+...+.++++..+
T Consensus        86 ASdeRGIDvV---Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ--------QAlRRtMEiyS~ttRFalaCN~s~  154 (333)
T KOG0991|consen   86 ASDERGIDVV---RNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ--------QALRRTMEIYSNTTRFALACNQSE  154 (333)
T ss_pred             CccccccHHH---HHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH--------HHHHHHHHHHcccchhhhhhcchh
Confidence            8875543321   1222344443       337999999999986554        444444555555555555565555


Q ss_pred             hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccccc
Q 013706          312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  391 (438)
Q Consensus       312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~  391 (438)
                      .+      -.++.+|+ ..++|..++..++..-+....+.+.           ...+++.++.++.-.       .|+-|
T Consensus       155 KI------iEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ek-----------v~yt~dgLeaiifta-------~GDMR  209 (333)
T KOG0991|consen  155 KI------IEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEK-----------VNYTDDGLEAIIFTA-------QGDMR  209 (333)
T ss_pred             hh------hhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhC-----------CCCCcchHHHhhhhc-------cchHH
Confidence            54      34567787 7888999999887777666665542           345667777776533       34445


Q ss_pred             chHHHHHHHH
Q 013706          392 LVDPMLVNAR  401 (438)
Q Consensus       392 ~l~~~~~~a~  401 (438)
                      ...|-++...
T Consensus       210 QalNnLQst~  219 (333)
T KOG0991|consen  210 QALNNLQSTV  219 (333)
T ss_pred             HHHHHHHHHh
Confidence            5555555443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.64  E-value=8.8e-16  Score=162.71  Aligned_cols=106  Identities=24%  Similarity=0.358  Sum_probs=95.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHc------------------------------
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN------------------------------   51 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~------------------------------   51 (438)
                      ..|+||||+||..|+.+++++|++    .|+++|.+|.+|+||||+|+..                              
T Consensus       556 ~~G~TpLh~Aa~~g~~~~v~~Ll~----~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~  631 (823)
T PLN03192        556 SKGRTPLHIAASKGYEDCVLVLLK----HACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAK  631 (823)
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHh----cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHH
Confidence            369999999999999999999999    6899999999999998866554                              


Q ss_pred             -CCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCC-Cccc
Q 013706           52 -GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG-KTPL  115 (438)
Q Consensus        52 -g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g-~t~l  115 (438)
                       |+.++++.|+++|+++|.+|.+|+||||+|+    ..|+.+++++|+++|++++..|..| .+|+
T Consensus       632 ~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~----~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~  693 (823)
T PLN03192        632 RNDLTAMKELLKQGLNVDSEDHQGATALQVAM----AEDHVDMVRLLIMNGADVDKANTDDDFSPT  693 (823)
T ss_pred             hCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HCCcHHHHHHHHHcCCCCCCCCCCCCCCHH
Confidence             4556667788899999999999999999999    8999999999999999999999888 7776

>PHA02917 ankyrin-like protein; Provisional

Probab=99.64  E-value=1.2e-15  Score=156.01  Aligned_cols=128  Identities=19%  Similarity=0.169  Sum_probs=108.4

Q ss_pred             CCCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCH----HHHHHHHHCCCCcccccCCC
Q 013706            2 QMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN----EAAKLLLAHGAFIEAKANNG   74 (438)
Q Consensus         2 ~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g   74 (438)
                      +.|+||||+||..   |+.++|++|++    .|++++.++..|+||||+|+..|+.    ++++.|++.+...|..+.  
T Consensus        30 ~~g~t~Lh~a~~~~~~~~~~~v~~Ll~----~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--  103 (661)
T PHA02917         30 QFKNNALHAYLFNEHCNNVEVVKLLLD----SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--  103 (661)
T ss_pred             CCCCcHHHHHHHhhhcCcHHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--
Confidence            5799999998655   88999999999    7999999999999999999999984    456888887544555432  


Q ss_pred             CcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccccc-ccCCCchhHHHHHHhccchHH
Q 013706           75 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL-SNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        75 ~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~-a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      .+++|+|+    .+++.+++++|+++|++++.+|.+|+|||+.+ +...++.+++++|+..|++..
T Consensus       104 ~~~~~~a~----~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn  165 (661)
T PHA02917        104 NIFSYMKS----KNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL  165 (661)
T ss_pred             chHHHHHh----hcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence            36677777    88999999999999999999999999999644 456789999999999998764

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=2.7e-15  Score=151.04  Aligned_cols=192  Identities=19%  Similarity=0.265  Sum_probs=147.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEE
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~  235 (438)
                      .+++=++|.+.-+.++-+++.                .+...|-+|.|+||+|||.++..+|...-...   .+....++
T Consensus       167 gklDPvIGRd~EI~r~iqIL~----------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~  230 (786)
T COG0542         167 GKLDPVIGRDEEIRRTIQILS----------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY  230 (786)
T ss_pred             CCCCCCcChHHHHHHHHHHHh----------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence            357778999977666666522                34567889999999999999999999874322   23445667


Q ss_pred             Eeeccccc--ccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          236 EVQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                      .++-..++  .+|-|+-+..++.++++.+   +.||||||+|.+.......+ + .-++-|-|.+.+..|.+.+|+|||-
T Consensus       231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLARGeL~~IGATT~  308 (786)
T COG0542         231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALARGELRCIGATTL  308 (786)
T ss_pred             EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHhcCCeEEEEeccH
Confidence            77766655  4599999999999887764   68999999999987554322 2 3466799999999999999999999


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHH
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI  376 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (438)
                      +.+...+..|+||.||| ..|.+..|+.++-..|++-.-.+...       --...++++++.+-.
T Consensus       309 ~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~-------hH~V~i~D~Al~aAv  366 (786)
T COG0542         309 DEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEA-------HHGVRITDEALVAAV  366 (786)
T ss_pred             HHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHH-------ccCceecHHHHHHHH
Confidence            99999999999999999 89999999999999999876554322       122345566655543

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=99.63  E-value=1.1e-15  Score=152.74  Aligned_cols=203  Identities=17%  Similarity=0.221  Sum_probs=144.5

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ..++|......++.+.+..+              .....++++.|++||||+++|++++..    +.....+|+.++|..
T Consensus       134 ~~lig~s~~~~~v~~~i~~~--------------a~~~~~vli~Ge~GtGK~~~A~~ih~~----~~~~~~~~~~~~c~~  195 (463)
T TIGR01818       134 AELIGEAPAMQEVFRAIGRL--------------SRSDITVLINGESGTGKELVARALHRH----SPRANGPFIALNMAA  195 (463)
T ss_pred             cceeecCHHHHHHHHHHHHH--------------hCcCCeEEEECCCCCCHHHHHHHHHHh----CCCCCCCeEEEeCCC
Confidence            35777777666666554332              234568999999999999999999984    333456999999876


Q ss_pred             ccc-----cccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC---------
Q 013706          242 LVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------  300 (438)
Q Consensus       242 ~~~-----~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------  300 (438)
                      +..     ..+|+...       .....++.+.+|+||||||+.+.+..|           ..|++.++++         
T Consensus       196 ~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q-----------~~ll~~l~~~~~~~~~~~~  264 (463)
T TIGR01818       196 IPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQ-----------TRLLRVLADGEFYRVGGRT  264 (463)
T ss_pred             CCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHH-----------HHHHHHHhcCcEEECCCCc
Confidence            532     24453211       112346677889999999999987544           7888877653         


Q ss_pred             ----CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccc-cccccHH
Q 013706          301 ----KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKL-HSSCSMD  370 (438)
Q Consensus       301 ----~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~-~~~~~~~  370 (438)
                          ++.+|++++.+....+..  -.+.|..|+ ...|.+|++.  .+++..++..++.+...     .+.. ...++++
T Consensus       265 ~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~-----~~~~~~~~~~~~  339 (463)
T TIGR01818       265 PIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAR-----ELDVEPKLLDPE  339 (463)
T ss_pred             eeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHH-----HhCCCCCCcCHH
Confidence                356777776655432210  023455577 4588999998  68999999999987643     2211 1358999


Q ss_pred             HHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          371 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ++..+..+.|      |||.|+|+++++++...+
T Consensus       340 a~~~L~~~~w------pgNvreL~~~~~~~~~~~  367 (463)
T TIGR01818       340 ALERLKQLRW------PGNVRQLENLCRWLTVMA  367 (463)
T ss_pred             HHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence            9999999999      999999999999998765

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.63  E-value=9.5e-15  Score=142.69  Aligned_cols=178  Identities=15%  Similarity=0.176  Sum_probs=117.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchH-HHHHHHHHc-cCcEEEEeCcccccC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP-KTRRRIKEA-EGGILFVDEAYRLIP  276 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~a-~~~il~iDEid~l~~  276 (438)
                      ..+++||||||||||.+++++++++....  ....++.+++.++...+...... .+....+.. ...+|+|||+|.+..
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~  213 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILENN--PNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG  213 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC
Confidence            45689999999999999999999886431  12356777777765544332111 111111111 246999999999875


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC-hhHHHHhhhCcCccCCCC--cceeCCCCCHHHHHHHHHHHHhccc
Q 013706          277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~-~~~~~~~~~~p~l~~R~~--~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      +..     .....+..+-...+.+..++|.++.. ..+..+   ++.+++||.  ..+.|++|+.+++.+|++..+....
T Consensus       214 ~~~-----~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l---~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~  285 (405)
T TIGR00362       214 KER-----TQEEFFHTFNALHENGKQIVLTSDRPPKELPGL---EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG  285 (405)
T ss_pred             CHH-----HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhh---hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            321     11223333334445555555555432 222233   789999994  5899999999999999999987642


Q ss_pred             cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                                 ..++++++..++...       .+|.|.+..++.+....+
T Consensus       286 -----------~~l~~e~l~~ia~~~-------~~~~r~l~~~l~~l~~~a  318 (405)
T TIGR00362       286 -----------LELPDEVLEFIAKNI-------RSNVRELEGALNRLLAYA  318 (405)
T ss_pred             -----------CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHH
Confidence                       446778888888765       678899988888776544

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.62  E-value=1.6e-14  Score=146.01  Aligned_cols=186  Identities=20%  Similarity=0.281  Sum_probs=129.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--CC----
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--TD----  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--~~----  232 (438)
                      ..|++++|++.+++.|..++..-               ....++||+||||||||++|+++|+.+.......  ..    
T Consensus        13 ~~f~~liGq~~i~~~L~~~l~~~---------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~   77 (620)
T PRK14948         13 QRFDELVGQEAIATTLKNALISN---------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK   77 (620)
T ss_pred             CcHhhccChHHHHHHHHHHHHcC---------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence            56899999999999988874421               1345799999999999999999999986422110  01    


Q ss_pred             -------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHH
Q 013706          233 -------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEE  292 (438)
Q Consensus       233 -------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~  292 (438)
                                   .+++++..      .+.....++++++.+       ...|+||||+|.|..           ...+.
T Consensus        78 C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~na  140 (620)
T PRK14948         78 CELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNA  140 (620)
T ss_pred             cHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHH
Confidence                         12222211      112334667766554       237999999999975           45599


Q ss_pred             HHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Q 013706          293 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  370 (438)
Q Consensus       293 ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  370 (438)
                      ||..|++  ..+++|++++..  ..+   .|++++|+ ..++|+.++.+++...+.....++.           ..++.+
T Consensus       141 LLK~LEePp~~tvfIL~t~~~--~~l---lpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~keg-----------i~is~~  203 (620)
T PRK14948        141 LLKTLEEPPPRVVFVLATTDP--QRV---LPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKES-----------IEIEPE  203 (620)
T ss_pred             HHHHHhcCCcCeEEEEEeCCh--hhh---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhC-----------CCCCHH
Confidence            9999997  566677665432  233   57789998 8899999999999988888777642           235667


Q ss_pred             HHHHHHHHHhhHhhhccccccchHHHHHHH
Q 013706          371 AIAALIEKETTEKQRREMNGGLVDPMLVNA  400 (438)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a  400 (438)
                      ++..++...       .|+.|.+.+.+++.
T Consensus       204 al~~La~~s-------~G~lr~A~~lLekl  226 (620)
T PRK14948        204 ALTLVAQRS-------QGGLRDAESLLDQL  226 (620)
T ss_pred             HHHHHHHHc-------CCCHHHHHHHHHHH
Confidence            777666654       56667777777754

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=99.62  E-value=1.2e-15  Score=152.27  Aligned_cols=204  Identities=15%  Similarity=0.132  Sum_probs=141.0

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  240 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  240 (438)
                      +..++|.+.....+.+.+..+              +....+++++|++||||+++|++++...    .....+|+.++|.
T Consensus       142 ~~~ii~~S~~~~~~~~~~~~~--------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s----~~~~~~~~~i~c~  203 (457)
T PRK11361        142 WGHILTNSPAMMDICKDTAKI--------------ALSQASVLISGESGTGKELIARAIHYNS----RRAKGPFIKVNCA  203 (457)
T ss_pred             ccceecccHHHhHHHHHHHHH--------------cCCCcEEEEEcCCCccHHHHHHHHHHhC----CCCCCCeEEEECC
Confidence            345677666555555443322              2355789999999999999999998843    3455689999998


Q ss_pred             cccc-----cccccchHH-------HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------
Q 013706          241 DLVG-----EFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------  300 (438)
Q Consensus       241 ~~~~-----~~~g~~~~~-------~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------  300 (438)
                      .+..     .++|+....       ....+..|.+|+|||||++.+.+..|           ..|+..++++        
T Consensus       204 ~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q-----------~~L~~~l~~~~~~~~~~~  272 (457)
T PRK11361        204 ALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQ-----------AKLLRILQEREFERIGGH  272 (457)
T ss_pred             CCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHH-----------HHHHHHHhcCcEEeCCCC
Confidence            7533     345532111       12356778899999999999987544           7888887653        


Q ss_pred             -----CEEEEEecCChhHHHHh--hhCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccc-cccccH
Q 013706          301 -----KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKL-HSSCSM  369 (438)
Q Consensus       301 -----~v~vi~~~~~~~~~~~~--~~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~-~~~~~~  369 (438)
                           ++.+|++++.+....+-  ...+.|..|+ ...|.+|++.  .+++..++..++.+...     .+.. ...+++
T Consensus       273 ~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~-----~~~~~~~~~~~  347 (457)
T PRK11361        273 QTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSS-----ENQRDIIDIDP  347 (457)
T ss_pred             ceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHH-----HcCCCCCCcCH
Confidence                 25777777655432211  0123445566 5667777776  47788888888887643     1111 246899


Q ss_pred             HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +++..+..+.|      |||.++|+++++++...+
T Consensus       348 ~a~~~L~~~~w------pgNv~eL~~~~~~~~~~~  376 (457)
T PRK11361        348 MAMSLLTAWSW------PGNIRELSNVIERAVVMN  376 (457)
T ss_pred             HHHHHHHcCCC------CCcHHHHHHHHHHHHHhC
Confidence            99999999999      999999999999998754

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.62  E-value=1.3e-14  Score=145.99  Aligned_cols=189  Identities=15%  Similarity=0.251  Sum_probs=129.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------  230 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--------  230 (438)
                      ..|++++|++.+++.|+..+..               ..-+..+||+||||||||++|+++|+.+.......        
T Consensus        13 ~~f~eivGQe~i~~~L~~~i~~---------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~   77 (620)
T PRK14954         13 SKFADITAQEHITHTIQNSLRM---------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV   77 (620)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence            4689999999999998876431               12334599999999999999999999996522110        


Q ss_pred             CC-----------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhH
Q 013706          231 TD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYG  286 (438)
Q Consensus       231 ~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~  286 (438)
                      ..                 .++.+++.+.      .....++.+.+..       ...|++|||+|.+..          
T Consensus        78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~----------  141 (620)
T PRK14954         78 TEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST----------  141 (620)
T ss_pred             CCCCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------
Confidence            01                 1122221110      0123444444333       347999999999975          


Q ss_pred             HHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 013706          287 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH  364 (438)
Q Consensus       287 ~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~  364 (438)
                       ...+.|+..|++  ...++|++++.  ...+   .+++++|+ ..++|.+++.+++...+...+.++.           
T Consensus       142 -~a~naLLK~LEePp~~tv~IL~t~~--~~kL---l~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~eg-----------  203 (620)
T PRK14954        142 -AAFNAFLKTLEEPPPHAIFIFATTE--LHKI---PATIASRC-QRFNFKRIPLDEIQSQLQMICRAEG-----------  203 (620)
T ss_pred             -HHHHHHHHHHhCCCCCeEEEEEeCC--hhhh---hHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcC-----------
Confidence             345899999998  45666665533  2333   56788887 8999999999999999988887642           


Q ss_pred             ccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          365 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      ..++.+++..++...       .|+.+.+.+.+++....
T Consensus       204 i~I~~eal~~La~~s-------~Gdlr~al~eLeKL~~y  235 (620)
T PRK14954        204 IQIDADALQLIARKA-------QGSMRDAQSILDQVIAF  235 (620)
T ss_pred             CCCCHHHHHHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence            335777888877765       57777787877766544

>PHA02917 ankyrin-like protein; Provisional

Probab=99.62  E-value=1.9e-15  Score=154.55  Aligned_cols=127  Identities=17%  Similarity=0.152  Sum_probs=96.8

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHH--HcCCHHHHHHHHHCCCCcccccC---CC------
Q 013706            6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA--KNGCNEAAKLLLAHGAFIEAKAN---NG------   74 (438)
Q Consensus         6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~---~g------   74 (438)
                      +++|+|+..|+.++|++|++    .|+++|.+|..|+||||+++  ..|+.+++++|+++|+++|..|.   .|      
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~----~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~  180 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVE----HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDY  180 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHH----cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccc
Confidence            34444555556677777777    78999999999999999654  47899999999999999987653   33      


Q ss_pred             -----CcHHHHHhhccc-------ccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCc-hhHHHHHHhccch
Q 013706           75 -----MTPLHLSVWYSI-------RSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS-AKLRELLLWHSEE  137 (438)
Q Consensus        75 -----~t~L~~A~~~~~-------~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~-~~~~~lL~~~~~~  137 (438)
                           .||||+|+....       ..++.+++++|+.+|++++.+|.+|+||||+++..+.. .+++++|.. |++
T Consensus       181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d  255 (661)
T PHA02917        181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GID  255 (661)
T ss_pred             cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCc
Confidence                 599999973100       13578999999999999999999999999555544332 378998875 443

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.62  E-value=2e-15  Score=141.02  Aligned_cols=160  Identities=19%  Similarity=0.243  Sum_probs=103.3

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC---------
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP---------  230 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~---------  230 (438)
                      .|.+++|++.+++.+.-..  +              .....|+||+||||||||++||+++..+.......         
T Consensus         6 ~f~~i~Gq~~~~~~l~~~~--~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~   69 (334)
T PRK13407          6 PFSAIVGQEEMKQAMVLTA--I--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP   69 (334)
T ss_pred             CHHHhCCHHHHHHHHHHHH--h--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence            5889999999988776421  1              01236899999999999999999999883100000         


Q ss_pred             -----------------CCCEEEeeccccccccccc---------chH-HHHHHHHHccCcEEEEeCcccccCCCCCCCc
Q 013706          231 -----------------TDRVTEVQRTDLVGEFVGH---------TGP-KTRRRIKEAEGGILFVDEAYRLIPMQKADDK  283 (438)
Q Consensus       231 -----------------~~~~~~~~~~~~~~~~~g~---------~~~-~~~~~~~~a~~~il~iDEid~l~~~~~~~~~  283 (438)
                                       ..+|+.+....-....+|.         .+. -....+.++.+|+|||||++.+.+       
T Consensus        70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------  142 (334)
T PRK13407         70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------  142 (334)
T ss_pred             cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence                             0122222222112223442         100 112344567789999999999987       


Q ss_pred             hhHHHHHHHHHhhccCCC---------------EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCH-HHHHHHHHH
Q 013706          284 DYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHI  347 (438)
Q Consensus       284 ~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~-~e~~~il~~  347 (438)
                          .+++.|++.|+++.               ++++++.++  .+..  ..+++++||...+.+++|.. +++.+|+++
T Consensus       143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP--~e~~--l~~aLldRF~~~v~v~~~~~~~e~~~il~~  214 (334)
T PRK13407        143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNP--EEGE--LRPQLLDRFGLSVEVRSPRDVETRVEVIRR  214 (334)
T ss_pred             ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCc--ccCC--CCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence                44488888887643               345555333  2211  26789999999999998887 888999987


Q ss_pred             HHh
Q 013706          348 KMN  350 (438)
Q Consensus       348 ~l~  350 (438)
                      ...
T Consensus       215 ~~~  217 (334)
T PRK13407        215 RDA  217 (334)
T ss_pred             hhc
Confidence            543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.62  E-value=6e-15  Score=119.22  Aligned_cols=121  Identities=45%  Similarity=0.696  Sum_probs=108.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|.||||+|+..|+.+++++|++    .+.+.+..+..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~----~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a   80 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLE----NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLA   80 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHH----cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            369999999999999999999999    5677788899999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL  131 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL  131 (438)
                      +    ..++.+++++|+..+.+.+..+..+.||+ +.+...+...+.++|
T Consensus        81 ~----~~~~~~~~~~L~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~L  125 (126)
T cd00204          81 A----RNGNLDVVKLLLKHGADVNARDKDGRTPL-HLAAKNGHLEVVKLL  125 (126)
T ss_pred             H----HcCcHHHHHHHHHcCCCCcccCCCCCCHH-HHHHhcCCHHHHHHh
Confidence            9    78889999999999999999999999999 444445666776665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.61  E-value=1.3e-14  Score=141.45  Aligned_cols=174  Identities=18%  Similarity=0.181  Sum_probs=116.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH--ccCcEEEEeCcccccC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIP  276 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~il~iDEid~l~~  276 (438)
                      ..+++||||||+|||.|++++++.+...+    ..++.++..++...+...........|..  ....+|+|||++.+..
T Consensus       141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~----~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~  216 (445)
T PRK12422        141 FNPIYLFGPEGSGKTHLMQAAVHALRESG----GKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG  216 (445)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcC----CCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC
Confidence            35799999999999999999999886533    36667776655443322111111122332  2347999999999865


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCCCEEEEEecC-ChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccc
Q 013706          277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-SEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~-~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      +..     ...+....+-..++.+..+++.++. +..+..+   ++.|++||  ...+.+++|+.+++..|+++.+....
T Consensus       217 k~~-----~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l---~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~  288 (445)
T PRK12422        217 KGA-----TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM---EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS  288 (445)
T ss_pred             Chh-----hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh---HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence            321     1112222222233445555555544 3333333   78999999  48999999999999999999887642


Q ss_pred             cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706          354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  402 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~  402 (438)
                                 ..++++++..++...       .+|+|.+.+.+++...
T Consensus       289 -----------~~l~~evl~~la~~~-------~~dir~L~g~l~~l~~  319 (445)
T PRK12422        289 -----------IRIEETALDFLIEAL-------SSNVKSLLHALTLLAK  319 (445)
T ss_pred             -----------CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHH
Confidence                       456788888888866       6788999999888753

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.61  E-value=9.5e-15  Score=144.38  Aligned_cols=178  Identities=15%  Similarity=0.170  Sum_probs=120.1

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHH-HHHHHHHc-cCcEEEEeCcccccC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK-TRRRIKEA-EGGILFVDEAYRLIP  276 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~a-~~~il~iDEid~l~~  276 (438)
                      ..+++||||||||||.+++++++++...+  ....++.+++.++...+....... .....+.. ...+|+|||+|.+..
T Consensus       148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~  225 (450)
T PRK00149        148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN--PNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG  225 (450)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC
Confidence            35699999999999999999999986532  123567777777765544332111 11222221 346999999999865


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChh-HHHHhhhCcCccCCCC--cceeCCCCCHHHHHHHHHHHHhccc
Q 013706          277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP-MKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~-~~~~~~~~p~l~~R~~--~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      +..     ....++..+-..++.+..++|+++.+.. +..+   +|.+++||.  ..+.|.+|+.+++..|++..+....
T Consensus       226 ~~~-----~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l---~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~  297 (450)
T PRK00149        226 KER-----TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL---EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG  297 (450)
T ss_pred             CHH-----HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH---HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC
Confidence            321     1123334444444556556665544322 2233   788999994  6899999999999999999887532


Q ss_pred             cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                                 ..++++++..++...       .++.|.+..++++....+
T Consensus       298 -----------~~l~~e~l~~ia~~~-------~~~~R~l~~~l~~l~~~~  330 (450)
T PRK00149        298 -----------IDLPDEVLEFIAKNI-------TSNVRELEGALNRLIAYA  330 (450)
T ss_pred             -----------CCCCHHHHHHHHcCc-------CCCHHHHHHHHHHHHHHH
Confidence                       346778888888876       678899988888776554

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.61  E-value=1.3e-14  Score=147.29  Aligned_cols=188  Identities=19%  Similarity=0.247  Sum_probs=126.5

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  231 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-------  231 (438)
                      ..|++++|++.+++.|...+..               ...+..+||+||||+|||++|+++|+.+........       
T Consensus        13 ~~~~eiiGq~~~~~~L~~~i~~---------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c   77 (585)
T PRK14950         13 QTFAELVGQEHVVQTLRNAIAE---------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC   77 (585)
T ss_pred             CCHHHhcCCHHHHHHHHHHHHh---------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence            4789999999999998876431               112344799999999999999999998863221000       


Q ss_pred             -----------CCEEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706          232 -----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI  293 (438)
Q Consensus       232 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l  293 (438)
                                 ..+++++++..      ..-..++.+.+.       +...|+||||+|.|..           ..++.|
T Consensus        78 ~~c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naL  140 (585)
T PRK14950         78 EMCRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNAL  140 (585)
T ss_pred             HHHHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHH
Confidence                       11223332110      112234444332       2347999999998874           445889


Q ss_pred             HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706          294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  371 (438)
Q Consensus       294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  371 (438)
                      +..+++  ...++|++++.  ...+   .+.+++|+ ..+.|+.++.+++..++...+.+..           ..++.++
T Consensus       141 Lk~LEepp~~tv~Il~t~~--~~kl---l~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~eg-----------l~i~~ea  203 (585)
T PRK14950        141 LKTLEEPPPHAIFILATTE--VHKV---PATILSRC-QRFDFHRHSVADMAAHLRKIAAAEG-----------INLEPGA  203 (585)
T ss_pred             HHHHhcCCCCeEEEEEeCC--hhhh---hHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence            999987  44555555432  2333   46678887 7899999999999999998887642           2356777


Q ss_pred             HHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706          372 IAALIEKETTEKQRREMNGGLVDPMLVNARE  402 (438)
Q Consensus       372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~  402 (438)
                      +..++...       .|+.+.+.+.+++...
T Consensus       204 l~~La~~s-------~Gdlr~al~~LekL~~  227 (585)
T PRK14950        204 LEAIARAA-------TGSMRDAENLLQQLAT  227 (585)
T ss_pred             HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence            87777654       5778888888886543

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.61  E-value=1.5e-15  Score=128.45  Aligned_cols=124  Identities=26%  Similarity=0.381  Sum_probs=88.4

Q ss_pred             hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706          164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  243 (438)
Q Consensus       164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~  243 (438)
                      |+|.+...+++.+.++.+              +..+.+|||+|++||||+++|++|++    .+.....||+.++|+.+.
T Consensus         1 liG~s~~m~~~~~~~~~~--------------a~~~~pVlI~GE~GtGK~~lA~~IH~----~s~r~~~pfi~vnc~~~~   62 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRA--------------ASSDLPVLITGETGTGKELLARAIHN----NSPRKNGPFISVNCAALP   62 (168)
T ss_dssp             SS--SHHHHHHHHHHHHH--------------TTSTS-EEEECSTTSSHHHHHHHHHH----CSTTTTS-EEEEETTTS-
T ss_pred             CEeCCHHHHHHHHHHHHH--------------hCCCCCEEEEcCCCCcHHHHHHHHHH----hhhcccCCeEEEehhhhh
Confidence            467777666666665544              35678999999999999999999999    555667899999998754


Q ss_pred             -----ccccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------
Q 013706          244 -----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------  300 (438)
Q Consensus       244 -----~~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------  300 (438)
                           ..++|...       ......|++|.+|+||||||+.|.+..|           ..|++.++++           
T Consensus        63 ~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~~  131 (168)
T PF00158_consen   63 EELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQ-----------AKLLRVLEEGKFTRLGSDKPV  131 (168)
T ss_dssp             HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHH-----------HHHHHHHHHSEEECCTSSSEE
T ss_pred             cchhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHHHH-----------HHHHHHHhhchhccccccccc
Confidence                 33566532       1234799999999999999999998444           8888888742           


Q ss_pred             --CEEEEEecCChhHHHH
Q 013706          301 --KVVVIFAGYSEPMKRV  316 (438)
Q Consensus       301 --~v~vi~~~~~~~~~~~  316 (438)
                        ++.+|++|+.+..+.+
T Consensus       132 ~~~~RiI~st~~~l~~~v  149 (168)
T PF00158_consen  132 PVDVRIIASTSKDLEELV  149 (168)
T ss_dssp             E--EEEEEEESS-HHHHH
T ss_pred             cccceEEeecCcCHHHHH
Confidence              5788888877665544

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK15115 response regulator GlrR; Provisional

Probab=99.61  E-value=1.6e-15  Score=150.64  Aligned_cols=181  Identities=18%  Similarity=0.214  Sum_probs=128.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-----ccccch-------HHHHHHHHHccCcE
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTG-------PKTRRRIKEAEGGI  265 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~-------~~~~~~~~~a~~~i  265 (438)
                      ...+++++|++|||||++|+++++...    ....+|+.++|..+...     .+|+..       ......++.+.+|+
T Consensus       156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~----r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt  231 (444)
T PRK15115        156 SDVSVLINGQSGTGKEILAQAIHNASP----RASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT  231 (444)
T ss_pred             CCCeEEEEcCCcchHHHHHHHHHHhcC----CCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence            456899999999999999999998543    34568999998865332     344321       11223567788899


Q ss_pred             EEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------------CEEEEEecCChhHHHHhh--hCcCccCCC-Cc
Q 013706          266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TK  329 (438)
Q Consensus       266 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~  329 (438)
                      |||||+|.|.+..|           ..|+..++++             ++.+|++++.+....+..  -.+.|..|+ ..
T Consensus       232 l~l~~i~~l~~~~q-----------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~  300 (444)
T PRK15115        232 LFLDEIGDMPAPLQ-----------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV  300 (444)
T ss_pred             EEEEccccCCHHHH-----------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhcee
Confidence            99999999998555           7888888753             457777776554332211  013344455 55


Q ss_pred             ceeCCCCCH--HHHHHHHHHHHhcccccccccccc-ccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          330 FFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFK-LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       330 ~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      .|.+|++..  +++..++..++.+...     .+. ....++++++..+..+.|      |||.|+|++++++|...+
T Consensus       301 ~i~lPpLr~R~eDi~~l~~~~l~~~~~-----~~~~~~~~~~~~a~~~L~~~~W------pgNvreL~~~i~~~~~~~  367 (444)
T PRK15115        301 SLKIPALAERTEDIPLLANHLLRQAAE-----RHKPFVRAFSTDAMKRLMTASW------PGNVRQLVNVIEQCVALT  367 (444)
T ss_pred             eecCCChHhccccHHHHHHHHHHHHHH-----HhCCCCCCcCHHHHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence            677777764  7888888998887542     121 123589999999999999      999999999999988754

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.61  E-value=1e-14  Score=136.44  Aligned_cols=159  Identities=21%  Similarity=0.272  Sum_probs=106.9

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE----
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT----  235 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~----  235 (438)
                      -|.+++|++.+|..|.-...                .+...++||.||+|||||++||++++.+....+....+|.    
T Consensus        15 pf~~ivGq~~~k~al~~~~~----------------~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~   78 (350)
T CHL00081         15 PFTAIVGQEEMKLALILNVI----------------DPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS   78 (350)
T ss_pred             CHHHHhChHHHHHHHHHhcc----------------CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence            48899999999988875421                2245689999999999999999999988654444333332    


Q ss_pred             -----------------------------Eeecccccccccccc--hHH--------HHHHHHHccCcEEEEeCcccccC
Q 013706          236 -----------------------------EVQRTDLVGEFVGHT--GPK--------TRRRIKEAEGGILFVDEAYRLIP  276 (438)
Q Consensus       236 -----------------------------~~~~~~~~~~~~g~~--~~~--------~~~~~~~a~~~il~iDEid~l~~  276 (438)
                                                   .+.........+|..  ++.        -...+.+|.+|||||||++.+.+
T Consensus        79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~  158 (350)
T CHL00081         79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD  158 (350)
T ss_pred             ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence                                         111111112233320  011        12345677789999999999998


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCC---------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCC-HHH
Q 013706          277 MQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEE  340 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~~~~~---------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~-~~e  340 (438)
                      ..|           +.|++.|+++               .+++|++.+  +.+..  ..++|.+||...+.+..|+ .++
T Consensus       159 ~~Q-----------~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~n--p~eg~--l~~~LldRf~l~i~l~~~~~~~~  223 (350)
T CHL00081        159 HLV-----------DILLDSAASGWNTVEREGISIRHPARFVLVGSGN--PEEGE--LRPQLLDRFGMHAEIRTVKDPEL  223 (350)
T ss_pred             HHH-----------HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccC--cccCC--CCHHHHHHhCceeecCCCCChHH
Confidence            544           7888888653               234444433  33311  2788999999999999998 589


Q ss_pred             HHHHHHHHH
Q 013706          341 LAKILHIKM  349 (438)
Q Consensus       341 ~~~il~~~l  349 (438)
                      +.+|+++..
T Consensus       224 e~~il~~~~  232 (350)
T CHL00081        224 RVKIVEQRT  232 (350)
T ss_pred             HHHHHHhhh
Confidence            999998764

>PHA02741 hypothetical protein; Provisional

Probab=99.60  E-value=4.4e-15  Score=127.01  Aligned_cols=94  Identities=30%  Similarity=0.417  Sum_probs=86.4

Q ss_pred             CCCcHHHHHHHcCC----HHHHHHHhcCCCCCCcccccccC-CCChHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCc
Q 013706            3 MAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMT   76 (438)
Q Consensus         3 ~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t   76 (438)
                      .|+||||+|+..|+    .+++++|++    .|+++|.++. .|+||||+|+..++.+++++|+. .|++++..|..|+|
T Consensus        59 ~g~T~Lh~A~~~g~~~~~~~ii~~Ll~----~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t  134 (169)
T PHA02741         59 AGQMCIHIAAEKHEAQLAAEIIDHLIE----LGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKS  134 (169)
T ss_pred             CCCcHHHHHHHcCChHHHHHHHHHHHH----cCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCC
Confidence            68999999999999    588999998    6889999985 89999999999999999999997 59999999999999


Q ss_pred             HHHHHhhcccccCcHHHHHHHHhCCCCC
Q 013706           77 PLHLSVWYSIRSEDYATVKTLLEYNADC  104 (438)
Q Consensus        77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~  104 (438)
                      |||+|+    ..++.+++++|++.++..
T Consensus       135 pL~~A~----~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        135 PFELAI----DNEDVAMMQILREIVATS  158 (169)
T ss_pred             HHHHHH----HCCCHHHHHHHHHHHHHh
Confidence            999999    788999999999876554

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.60  E-value=2.7e-15  Score=143.68  Aligned_cols=158  Identities=20%  Similarity=0.222  Sum_probs=105.4

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC------
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR------  233 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~------  233 (438)
                      .|++++|++.+++.|++.+..-..   .   ....+...+..+||+||||+|||++|+.+|+.+...... ..+      
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~---~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-~~~Cg~C~~   75 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARA---D---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-EPGCGECRA   75 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccc---c---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-CCCCCCCHH
Confidence            588999999999999987553210   0   011112235569999999999999999999988643210 011      


Q ss_pred             -----------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706          234 -----------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS  295 (438)
Q Consensus       234 -----------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~  295 (438)
                                 +..+.+..   ..+  .-..++.+++.+       ...|+||||+|.+.+.           ..|.||.
T Consensus        76 C~~~~~~~hpD~~~i~~~~---~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk  139 (394)
T PRK07940         76 CRTVLAGTHPDVRVVAPEG---LSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLK  139 (394)
T ss_pred             HHHHhcCCCCCEEEecccc---ccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHH
Confidence                       11111110   111  123456666544       2369999999999763           3488999


Q ss_pred             hccC---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHH
Q 013706          296 VMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI  347 (438)
Q Consensus       296 ~~~~---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~  347 (438)
                      .|++   +.+++++|++...   +   .|++++|+ ..+.|++|+.++..+++..
T Consensus       140 ~LEep~~~~~fIL~a~~~~~---l---lpTIrSRc-~~i~f~~~~~~~i~~~L~~  187 (394)
T PRK07940        140 AVEEPPPRTVWLLCAPSPED---V---LPTIRSRC-RHVALRTPSVEAVAEVLVR  187 (394)
T ss_pred             HhhcCCCCCeEEEEECChHH---C---hHHHHhhC-eEEECCCCCHHHHHHHHHH
Confidence            9987   5556666655333   2   78899998 8999999999998888763

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.60  E-value=1.1e-15  Score=158.86  Aligned_cols=131  Identities=39%  Similarity=0.540  Sum_probs=114.1

Q ss_pred             CCCcHHHHHHHcC-CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCC-----------------
Q 013706            3 MAQTPLHVSAGYN-KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG-----------------   64 (438)
Q Consensus         3 ~g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----------------   64 (438)
                      .|+||+|.|+..| +.+....+++    .+.++|.....|.||||+|++.||.+++..|++.+                 
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~----~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla  514 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQ----YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLA  514 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhh----cCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhh
Confidence            6899999999999 8888888888    68889999999999999999999887776666654                 


Q ss_pred             ----------------CCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHH
Q 013706           65 ----------------AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR  128 (438)
Q Consensus        65 ----------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~  128 (438)
                                      ++++.++.+|.||||.||    ..|+..+|++|+++|++++.+++.|+||| |.|+..++.+++
T Consensus       515 ~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~----~~g~v~~VkfLLe~gAdv~ak~~~G~TPL-H~Aa~~G~~~i~  589 (1143)
T KOG4177|consen  515 ADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV----HYGNVDLVKFLLEHGADVNAKDKLGYTPL-HQAAQQGHNDIA  589 (1143)
T ss_pred             hhhhhHHHHHHHhhcCCceehhcccccchHHHHH----hcCCchHHHHhhhCCccccccCCCCCChh-hHHHHcChHHHH
Confidence                            456667778999999999    88999999999999999999999999999 555557799999


Q ss_pred             HHHHhccchHHHHH
Q 013706          129 ELLLWHSEEQRKRR  142 (438)
Q Consensus       129 ~lL~~~~~~~~~~~  142 (438)
                      .+|.++|++.+..+
T Consensus       590 ~LLlk~GA~vna~d  603 (1143)
T KOG4177|consen  590 ELLLKHGASVNAAD  603 (1143)
T ss_pred             HHHHHcCCCCCccc
Confidence            99999998866654

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.59  E-value=3.5e-14  Score=143.63  Aligned_cols=189  Identities=16%  Similarity=0.267  Sum_probs=132.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCc--------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGIL--------  229 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~--------  229 (438)
                      ..|++++|++.+++.|...+.                .+..+| +|||||+|+|||++|+++|+.+......        
T Consensus        14 ~~f~~viGq~~~~~~L~~~i~----------------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~   77 (614)
T PRK14971         14 STFESVVGQEALTTTLKNAIA----------------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE   77 (614)
T ss_pred             CCHHHhcCcHHHHHHHHHHHH----------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence            469999999999999888744                123344 8999999999999999999988632110        


Q ss_pred             ----------CCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHH
Q 013706          230 ----------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEE  292 (438)
Q Consensus       230 ----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~  292 (438)
                                ....++++++.+.      .....++.+++++       ...|++|||+|.|..           ...+.
T Consensus        78 C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~na  140 (614)
T PRK14971         78 CESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNA  140 (614)
T ss_pred             chHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHH
Confidence                      0112333333211      1123566666544       236999999999975           34589


Q ss_pred             HHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Q 013706          293 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  370 (438)
Q Consensus       293 ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  370 (438)
                      |+..|++  ...++|++++..  ..+   .|++++|+ ..++|.+++.+++...+...+.++.           ..++.+
T Consensus       141 LLK~LEepp~~tifIL~tt~~--~kI---l~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~eg-----------i~i~~~  203 (614)
T PRK14971        141 FLKTLEEPPSYAIFILATTEK--HKI---LPTILSRC-QIFDFNRIQVADIVNHLQYVASKEG-----------ITAEPE  203 (614)
T ss_pred             HHHHHhCCCCCeEEEEEeCCc--hhc---hHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHH
Confidence            9999987  456666665432  233   67889998 8899999999999999998888752           335667


Q ss_pred             HHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          371 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ++..++...       .|+.|.+.+.+++.....
T Consensus       204 al~~La~~s-------~gdlr~al~~Lekl~~y~  230 (614)
T PRK14971        204 ALNVIAQKA-------DGGMRDALSIFDQVVSFT  230 (614)
T ss_pred             HHHHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence            777777755       577788888887765443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.59  E-value=7.4e-15  Score=134.90  Aligned_cols=118  Identities=20%  Similarity=0.240  Sum_probs=99.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      .|.||||+|+..|+.+++++|++    .|+++|.++ ..|.||||+|+..|+.+++++|+.+|++++.+|..|.||||+|
T Consensus        69 ~g~TpLh~Aa~~~~~eivklLL~----~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A  144 (300)
T PHA02884         69 SKTNPLIYAIDCDNDDAAKLLIR----YGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELA  144 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----cCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            69999999999999999999999    799999864 5799999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      +    ..++..++..+.  |..   .+..+.+|.+..    ...++.++|..+...
T Consensus       145 ~----~~~~~~~~~~~~--~~~---~~~~~~~~~~~~----~n~ei~~~Lish~vl  187 (300)
T PHA02884        145 L----MICNNFLAFMIC--DNE---ISNFYKHPKKIL----INFDILKILVSHFIL  187 (300)
T ss_pred             H----HhCChhHHHHhc--CCc---ccccccChhhhh----ccHHHHHHHHHHHHH
Confidence            8    667777765554  322   466777888432    256788888887764

>PRK08727 hypothetical protein; Validated

Probab=99.59  E-value=1.3e-13  Score=123.81  Aligned_cols=185  Identities=15%  Similarity=0.121  Sum_probs=119.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc-CcEEEEeCcccccCCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPMQ  278 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~il~iDEid~l~~~~  278 (438)
                      ..++|+||||||||.++.+++..+...+.    ..+.++..++.        ..+.+.++... .-+|+|||++.+....
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~----~~~y~~~~~~~--------~~~~~~~~~l~~~dlLiIDDi~~l~~~~  109 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGR----SSAYLPLQAAA--------GRLRDALEALEGRSLVALDGLESIAGQR  109 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEeHHHhh--------hhHHHHHHHHhcCCEEEEeCcccccCCh
Confidence            45999999999999999999998865442    23333333222        12334444433 3699999999887533


Q ss_pred             CCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcccccc
Q 013706          279 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDS  356 (438)
Q Consensus       279 ~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~~  356 (438)
                      .      ....+-.++....+....+|++++..+. .+-..+|.|++||  ...+.|++|+.+++.+|++++..+.    
T Consensus       110 ~------~~~~lf~l~n~~~~~~~~vI~ts~~~p~-~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~----  178 (233)
T PRK08727        110 E------DEVALFDFHNRARAAGITLLYTARQMPD-GLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR----  178 (233)
T ss_pred             H------HHHHHHHHHHHHHHcCCeEEEECCCChh-hhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc----
Confidence            2      1122223333332333444454443332 2222378999997  6789999999999999999877653    


Q ss_pred             ccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          357 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                         +    ..++++++..++...       .++.+.+.++++.....+..          .-+.||.+.+++.+.
T Consensus       179 ---~----l~l~~e~~~~La~~~-------~rd~r~~l~~L~~l~~~~~~----------~~~~it~~~~~~~l~  229 (233)
T PRK08727        179 ---G----LALDEAAIDWLLTHG-------ERELAGLVALLDRLDRESLA----------AKRRVTVPFLRRVLE  229 (233)
T ss_pred             ---C----CCCCHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHH----------hCCCCCHHHHHHHHh
Confidence               2    346788888888875       56778888888877653311          113588888877664

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.59  E-value=6.9e-14  Score=136.89  Aligned_cols=177  Identities=15%  Similarity=0.183  Sum_probs=116.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccch-HHHHHHHHHc--cCcEEEEeCccccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-PKTRRRIKEA--EGGILFVDEAYRLI  275 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a--~~~il~iDEid~l~  275 (438)
                      ..+++||||||+|||.|++++++++....  ....++.+++.++...+..... ..+....+..  ...+|+|||++.+.
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~--~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~  207 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLI  207 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhc
Confidence            35699999999999999999999875422  1235666777766555432110 1122222222  35799999999886


Q ss_pred             CCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh-hHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcc
Q 013706          276 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE-PMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       276 ~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~-~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~  352 (438)
                      ....     ...+.+..+-...+.+..++++++... .+..+   .+.+++||  ...+.+.+|+.+.+..|+++.+...
T Consensus       208 ~~~~-----~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l---~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~  279 (440)
T PRK14088        208 GKTG-----VQTELFHTFNELHDSGKQIVICSDREPQKLSEF---QDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE  279 (440)
T ss_pred             CcHH-----HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH---HHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc
Confidence            5321     112344444444455655555553322 22233   67889999  5688999999999999999988753


Q ss_pred             ccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          353 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      .           ..++++++..++.+.       .+|.|.+..++.+....
T Consensus       280 ~-----------~~l~~ev~~~Ia~~~-------~~~~R~L~g~l~~l~~~  312 (440)
T PRK14088        280 H-----------GELPEEVLNFVAENV-------DDNLRRLRGAIIKLLVY  312 (440)
T ss_pred             C-----------CCCCHHHHHHHHhcc-------ccCHHHHHHHHHHHHHH
Confidence            2           346778888888766       67889999998876543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=6.9e-15  Score=105.74  Aligned_cols=103  Identities=26%  Similarity=0.349  Sum_probs=93.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW   83 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   83 (438)
                      |.-.+.|++.+|.++-|+..+.    .|.++|..- .|+||||+|+-.|..+++++|+..|++++.+|+.|-|||..|+ 
T Consensus         2 ~d~~~~W~vkNG~~DeVk~~v~----~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAv-   75 (117)
T KOG4214|consen    2 GDMSVAWNVKNGEIDEVKQSVN----EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAV-   75 (117)
T ss_pred             cchhHhhhhccCcHHHHHHHHH----ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHH-
Confidence            4456789999999999999887    677888654 8999999999999999999999999999999999999999999 


Q ss_pred             cccccCcHHHHHHHHhCCCCCcccCCCCCccc
Q 013706           84 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPL  115 (438)
Q Consensus        84 ~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l  115 (438)
                         ..||.+++++||+.|++-.....+|.+.+
T Consensus        76 ---wEGH~~cVklLL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   76 ---WEGHRDCVKLLLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             ---HHhhHHHHHHHHHcCcccceeCCCchhHH
Confidence               78999999999999999998888887776

>TIGR00368 Mg chelatase-related protein

Probab=99.58  E-value=5e-14  Score=138.72  Aligned_cols=153  Identities=22%  Similarity=0.283  Sum_probs=104.3

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc-------------
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV-------------  226 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~-------------  226 (438)
                      +|+++.|++.+++.+.-.                  .....+++|+||||||||++|+.++..+...             
T Consensus       190 d~~dv~Gq~~~~~al~~a------------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s  251 (499)
T TIGR00368       190 DLKDIKGQQHAKRALEIA------------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWS  251 (499)
T ss_pred             CHHHhcCcHHHHhhhhhh------------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccccc
Confidence            789999999887766543                  2345789999999999999999998754210             


Q ss_pred             --C------CcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706          227 --G------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  298 (438)
Q Consensus       227 --~------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  298 (438)
                        +      .....||...+.+......+|.........+..|.+|||||||++.+.+           .++..|++.|+
T Consensus       252 ~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~-----------~~~~~L~~~LE  320 (499)
T TIGR00368       252 LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR-----------SVLDALREPIE  320 (499)
T ss_pred             chhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCH-----------HHHHHHHHHHH
Confidence              0      0123455544444333334443322334567899999999999998875           45578888886


Q ss_pred             CC---------------CEEEEEecCChhH------------------HHHhhhCcCccCCCCcceeCCCCCHHHH
Q 013706          299 GG---------------KVVVIFAGYSEPM------------------KRVIASNEGFCRRVTKFFHFNDFNSEEL  341 (438)
Q Consensus       299 ~~---------------~v~vi~~~~~~~~------------------~~~~~~~p~l~~R~~~~i~~~~~~~~e~  341 (438)
                      ++               ++.+|+++++.+-                  .......++|++|||..+.+++++.+++
T Consensus       321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l  396 (499)
T TIGR00368       321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL  396 (499)
T ss_pred             cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence            54               3678888876420                  0122336789999999999998876543

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.4e-14  Score=142.25  Aligned_cols=207  Identities=20%  Similarity=0.233  Sum_probs=146.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc---CcEEEEeCcccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRL  274 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l  274 (438)
                      -.+.+||+|+||||||++++++|++++.       ++++++|.++..+..++++.++...|..|+   ++|||+-.+|.+
T Consensus       430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~-------h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl  502 (953)
T KOG0736|consen  430 LNPSVLLHGPPGSGKTTVVRAVASELGL-------HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVL  502 (953)
T ss_pred             cceEEEEeCCCCCChHHHHHHHHHHhCC-------ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEecccee
Confidence            3457999999999999999999999988       999999999999999999999999999885   589999999999


Q ss_pred             cCCCCCCCchhHHHHHHHHHhhcc-----CCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706          275 IPMQKADDKDYGIEALEEIMSVMD-----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  349 (438)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ll~~~~-----~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l  349 (438)
                      .-++.++..--...+++.++. .|     ...++||+++++.  +.+   .|.+++-|...|.++.|+.+||.+||+-++
T Consensus       503 ~id~dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~--~~l---p~~i~~~f~~ei~~~~lse~qRl~iLq~y~  576 (953)
T KOG0736|consen  503 GIDQDGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSI--EDL---PADIQSLFLHEIEVPALSEEQRLEILQWYL  576 (953)
T ss_pred             eecCCCchhHHHHHHHHHHHh-cccccCCCCceEEEEecccc--ccC---CHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence            865554333333455555555 22     2457777775443  322   677888888999999999999999999999


Q ss_pred             hccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccC-----CCC--C----hhhh
Q 013706          350 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-----DCL--D----TDEL  418 (438)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~-----~~~--~----~~~~  418 (438)
                      ....         ++.++....++..+.+.+         -+++..++..+-+.+..|+..     ...  +    ....
T Consensus       577 ~~~~---------~n~~v~~k~~a~~t~gfs---------~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~  638 (953)
T KOG0736|consen  577 NHLP---------LNQDVNLKQLARKTSGFS---------FGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAG  638 (953)
T ss_pred             hccc---------cchHHHHHHHHHhcCCCC---------HHHHHHHhcCchHHHHHHHHhhcccccchhcccccccccc
Confidence            8753         334444444444444333         344555554443333333211     000  1    1123


Q ss_pred             hhccHHHHHHHHHHHHh
Q 013706          419 RTITLEDLEAGLKLLLR  435 (438)
Q Consensus       419 ~~i~~~d~~~a~~~~~~  435 (438)
                      ..++++||..|+..++.
T Consensus       639 ~~l~~edf~kals~~~~  655 (953)
T KOG0736|consen  639 FLLTEEDFDKALSRLQK  655 (953)
T ss_pred             ceecHHHHHHHHHHHHH
Confidence            58999999999998875

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.56  E-value=1.5e-14  Score=147.93  Aligned_cols=232  Identities=21%  Similarity=0.139  Sum_probs=140.5

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH----------cCC--
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM----------VGI--  228 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~----------~~~--  228 (438)
                      |..|+|++.++..+.-..  +              .....++||.||||||||++||+|++.+..          +..  
T Consensus         3 f~~ivGq~~~~~al~~~a--v--------------~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~   66 (633)
T TIGR02442         3 FTAIVGQEDLKLALLLNA--V--------------DPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDD   66 (633)
T ss_pred             cchhcChHHHHHHHHHHh--h--------------CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCC
Confidence            568999999887765331  1              123357999999999999999999998720          000  


Q ss_pred             ----------------cCCCCEEEeecccccccccccc--hH--------HHHHHHHHccCcEEEEeCcccccCCCCCCC
Q 013706          229 ----------------LPTDRVTEVQRTDLVGEFVGHT--GP--------KTRRRIKEAEGGILFVDEAYRLIPMQKADD  282 (438)
Q Consensus       229 ----------------~~~~~~~~~~~~~~~~~~~g~~--~~--------~~~~~~~~a~~~il~iDEid~l~~~~~~~~  282 (438)
                                      ....+|+.+........++|..  ..        .....+.+|.+|||||||++.+.+.     
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~-----  141 (633)
T TIGR02442        67 PEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH-----  141 (633)
T ss_pred             ccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-----
Confidence                            1134777766654444455542  11        1134566778899999999999874     


Q ss_pred             chhHHHHHHHHHhhccCCC---------------EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCC-HHHHHHHHH
Q 013706          283 KDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILH  346 (438)
Q Consensus       283 ~~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~-~~e~~~il~  346 (438)
                            +++.|+..|+.+.               +.+|+++++..- .   ..++|++||+..|.++.+. .+++.++++
T Consensus       142 ------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg-~---l~~~L~dR~~l~i~v~~~~~~~~~~~il~  211 (633)
T TIGR02442       142 ------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG-D---LRPQLLDRFGLCVDVAAPRDPEERVEIIR  211 (633)
T ss_pred             ------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC-C---CCHHHHhhcceEEEccCCCchHHHHHHHH
Confidence                  4589999987652               566776554321 1   2678999999999998876 577788887


Q ss_pred             HHHhcccccc-----------------cc-ccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccc
Q 013706          347 IKMNNQTEDS-----------------LL-YGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL  408 (438)
Q Consensus       347 ~~l~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~  408 (438)
                      +.+.......                 .. ..+.-...++++.+..+...+....   ....|....++.-|.-.|+   
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~---i~s~Ra~i~~~r~Ara~Aa---  285 (633)
T TIGR02442       212 RRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFG---VDGHRADIVMARAARALAA---  285 (633)
T ss_pred             HHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC---CCCccHHHHHHHHHHHHHH---
Confidence            6443110000                 00 0000112345555555555443110   0012333334343333332   


Q ss_pred             cCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          409 SFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       409 ~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                            -++...|+.+|+.+|+..+.+
T Consensus       286 ------L~gr~~V~~~Dv~~A~~lvL~  306 (633)
T TIGR02442       286 ------LDGRRRVTAEDVREAAELVLP  306 (633)
T ss_pred             ------HcCCCcCCHHHHHHHHHHHhh
Confidence                  234578999999999987754

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.56  E-value=6.3e-15  Score=155.28  Aligned_cols=123  Identities=32%  Similarity=0.299  Sum_probs=102.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc--------------CCCChHHHHHHHcCCHHHHHHHHHCCCCcc
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--------------MYGETPLHMAAKNGCNEAAKLLLAHGAFIE   68 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d--------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   68 (438)
                      .|.||||+||.+|+.++|++|++    .|++++.++              ..|+||||+|+..|+.+++++|+++|+|+|
T Consensus       127 ~G~TpLhlAa~~~~~eiVklLL~----~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin  202 (743)
T TIGR00870       127 PGITALHLAAHRQNYEIVKLLLE----RGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL  202 (743)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHh----CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh
Confidence            59999999999999999999999    678887653              369999999999999999999999999999


Q ss_pred             cccCCCCcHHHHHhhcccccC---------cHHHHHHHHhCCCC---C----cccCCCCCccccccccCCCchhHHHHHH
Q 013706           69 AKANNGMTPLHLSVWYSIRSE---------DYATVKTLLEYNAD---C----SAKDNEGKTPLDHLSNGPGSAKLRELLL  132 (438)
Q Consensus        69 ~~~~~g~t~L~~A~~~~~~~~---------~~~~~~~Ll~~ga~---~----~~~d~~g~t~l~~~a~~~~~~~~~~lL~  132 (438)
                      .+|..|+||||+|+    ..+         ...+.++++..++.   +    +..|.+|.||+ +.|+..++.+++++|+
T Consensus       203 ~~d~~g~T~Lh~A~----~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL-~~A~~~g~~~l~~lLL  277 (743)
T TIGR00870       203 TADSLGNTLLHLLV----MENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPL-KLAAKEGRIVLFRLKL  277 (743)
T ss_pred             hHhhhhhHHHHHHH----hhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCch-hhhhhcCCccHHHHHH
Confidence            99999999999999    443         22344555554444   3    67799999999 6666678888999888


Q ss_pred             hc
Q 013706          133 WH  134 (438)
Q Consensus       133 ~~  134 (438)
                      ..
T Consensus       278 ~~  279 (743)
T TIGR00870       278 AI  279 (743)
T ss_pred             HH
Confidence            64

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.56  E-value=2.7e-14  Score=144.52  Aligned_cols=149  Identities=12%  Similarity=0.178  Sum_probs=97.9

Q ss_pred             HHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------------------CEEEEEecCChhH
Q 013706          257 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM  313 (438)
Q Consensus       257 ~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~v~vi~~~~~~~~  313 (438)
                      .+.+|.+|+|||||++.|.+..|           ..|++.|+++                       ++.+|++++++..
T Consensus       212 ~L~~AngGtL~Ldei~~L~~~~q-----------~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l  280 (608)
T TIGR00764       212 AIHRAHKGVLYIDEIKTMPLEVQ-----------QYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL  280 (608)
T ss_pred             ceEECCCCEEEEEChHhCCHHHH-----------HHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH
Confidence            45667789999999999986443           6777776532                       4678888777644


Q ss_pred             HHHhhhCcCccCCCC---cceeCCC---CCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhH-h--h
Q 013706          314 KRVIASNEGFCRRVT---KFFHFND---FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-K--Q  384 (438)
Q Consensus       314 ~~~~~~~p~l~~R~~---~~i~~~~---~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~  384 (438)
                      ..+   +|+|++||+   ..+.|+.   .+.+.+..+++. +.+..+     .....+.++.++++.+++++... .  .
T Consensus       281 ~~l---~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~-i~~~~~-----r~G~l~~~s~~Av~~Li~~~~R~ag~r~  351 (608)
T TIGR00764       281 EGM---HPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQF-VAQEVK-----KDGRIPHFTRDAVEEIVREAQRRAGRKD  351 (608)
T ss_pred             hhc---CHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHH-HHHHHH-----HhCCCCcCCHHHHHHHHHHHHHHHhccc
Confidence            444   999999998   6666643   345555555543 333221     11122468999999999876532 1  1


Q ss_pred             hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          385 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      .-+.+.|++.+++..|...+..         +....|+.+|+.+|++.-.
T Consensus       352 ~lsl~~R~L~~llR~A~~iA~~---------~~~~~I~~ehV~~Ai~~~~  392 (608)
T TIGR00764       352 HLTLRLRELGGLVRAAGDIAKS---------SGKVYVTAEHVLKAKKLAK  392 (608)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHh---------cCCceecHHHHHHHHHHHH
Confidence            2245678999999888544411         1235799999999887543

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK05642 DNA replication initiation factor; Validated

Probab=99.55  E-value=1.9e-13  Score=122.83  Aligned_cols=185  Identities=11%  Similarity=0.151  Sum_probs=122.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc-CcEEEEeCcccccCC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPM  277 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~il~iDEid~l~~~  277 (438)
                      ..+++|+||+|||||.|++++++++...+    ..++.++..++....        ...++... .-+|+||+++.+..+
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~----~~v~y~~~~~~~~~~--------~~~~~~~~~~d~LiiDDi~~~~~~  112 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG----EPAVYLPLAELLDRG--------PELLDNLEQYELVCLDDLDVIAGK  112 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEeeHHHHHhhh--------HHHHHhhhhCCEEEEechhhhcCC
Confidence            46789999999999999999999875433    245566666654321        12222222 258999999988653


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706          278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED  355 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~  355 (438)
                      .+     ......+.+-...+.+..+++++++.++....  ..|.|++||  ...+.+.+|+.+++.++++......   
T Consensus       113 ~~-----~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~--~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~---  182 (234)
T PRK05642        113 AD-----WEEALFHLFNRLRDSGRRLLLAASKSPRELPI--KLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR---  182 (234)
T ss_pred             hH-----HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCc--cCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc---
Confidence            22     11223333333445577777777655543322  279999999  6788899999999999999765442   


Q ss_pred             cccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                          +    ..++++++..++.+.       .+++|.+.+++++..+.+.          ..-++||..-+++++
T Consensus       183 ----~----~~l~~ev~~~L~~~~-------~~d~r~l~~~l~~l~~~~l----------~~~~~it~~~~~~~L  232 (234)
T PRK05642        183 ----G----LHLTDEVGHFILTRG-------TRSMSALFDLLERLDQASL----------QAQRKLTIPFLKETL  232 (234)
T ss_pred             ----C----CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHH----------HcCCcCCHHHHHHHh
Confidence                2    346778888888876       6788999999887764321          011346666666554

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.55  E-value=3.6e-15  Score=145.37  Aligned_cols=123  Identities=33%  Similarity=0.366  Sum_probs=116.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      +|+|.||.||.+|+.+++++|++    ..+-++..|..|.+|||+|++.|+.++++.++.++..+|+.+..|.||||.|+
T Consensus        48 ~gfTalhha~Lng~~~is~llle----~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaa  123 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLD----YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAA  123 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhc----chhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhh
Confidence            79999999999999999999999    57778889999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                          .+|+.+++.+||.+|+++.++|+.+.|++ -+|+..+...++++|+..
T Consensus       124 ----qhgh~dvv~~Ll~~~adp~i~nns~~t~l-dlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  124 ----QHGHLEVVFYLLKKNADPFIRNNSKETVL-DLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             ----hhcchHHHHHHHhcCCCccccCcccccHH-HHHHHhhhhHHHHHHhhh
Confidence                99999999999999999999999999999 777778899999988765

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.55  E-value=1.7e-13  Score=123.69  Aligned_cols=133  Identities=20%  Similarity=0.244  Sum_probs=83.4

Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChh-------HHHHhhhCcCccCCCCcceeCC
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEP-------MKRVIASNEGFCRRVTKFFHFN  334 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~-------~~~~~~~~p~l~~R~~~~i~~~  334 (438)
                      +|||||||+|.|--           +....|-+.|++ -.-++|+|||+--       +..-.-.+..|++|+ .+|...
T Consensus       292 pGVLFIDEvHmLDI-----------E~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~t~  359 (450)
T COG1224         292 PGVLFIDEVHMLDI-----------ECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIISTR  359 (450)
T ss_pred             cceEEEechhhhhH-----------HHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEecC
Confidence            38999999988743           666788888887 2344555543211       110001124678898 899999


Q ss_pred             CCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCC
Q 013706          335 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLD  414 (438)
Q Consensus       335 ~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~  414 (438)
                      +|+.+|+.+|++.....+.           ..+++++++.++.--.      ..+.|-..+++.-|...|..|       
T Consensus       360 py~~~EireIi~iRa~ee~-----------i~l~~~Ale~L~~ig~------etSLRYa~qLL~pa~iiA~~r-------  415 (450)
T COG1224         360 PYSREEIREIIRIRAKEED-----------IELSDDALEYLTDIGE------ETSLRYAVQLLTPASIIAKRR-------  415 (450)
T ss_pred             CCCHHHHHHHHHHhhhhhc-----------cccCHHHHHHHHhhch------hhhHHHHHHhccHHHHHHHHh-------
Confidence            9999999999999887753           5578889888877433      222344455655454444222       


Q ss_pred             hhhhhhccHHHHHHHHHHH
Q 013706          415 TDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       415 ~~~~~~i~~~d~~~a~~~~  433 (438)
                        +...|..+|+++|.+.|
T Consensus       416 --g~~~V~~~dVe~a~~lF  432 (450)
T COG1224         416 --GSKRVEVEDVERAKELF  432 (450)
T ss_pred             --CCCeeehhHHHHHHHHH
Confidence              22345555665555443

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.55  E-value=8.2e-14  Score=130.53  Aligned_cols=157  Identities=21%  Similarity=0.309  Sum_probs=100.7

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------CC
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------TD  232 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--------~~  232 (438)
                      |..++|++.+|..+.-.+  +              .+...+++|.|+||||||+++|+++..+.......        ..
T Consensus         3 f~~ivgq~~~~~al~~~~--~--------------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~   66 (337)
T TIGR02030         3 FTAIVGQDEMKLALLLNV--I--------------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSD   66 (337)
T ss_pred             ccccccHHHHHHHHHHHh--c--------------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCC
Confidence            567899999988765321  1              12356899999999999999999998772100000        00


Q ss_pred             -------------------------CEEEeecccccccccccch--HH--------HHHHHHHccCcEEEEeCcccccCC
Q 013706          233 -------------------------RVTEVQRTDLVGEFVGHTG--PK--------TRRRIKEAEGGILFVDEAYRLIPM  277 (438)
Q Consensus       233 -------------------------~~~~~~~~~~~~~~~g~~~--~~--------~~~~~~~a~~~il~iDEid~l~~~  277 (438)
                                               +++.+........++|...  +.        ....+.+|.+++|||||++.+.+.
T Consensus        67 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~  146 (337)
T TIGR02030        67 PEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH  146 (337)
T ss_pred             ccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH
Confidence                                     1111111111113334311  11        123566788899999999999874


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCC---------------EEEEEecCChhHH-HHhhhCcCccCCCCcceeCCCCCH-HH
Q 013706          278 QKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMK-RVIASNEGFCRRVTKFFHFNDFNS-EE  340 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~~-~~~~~~p~l~~R~~~~i~~~~~~~-~e  340 (438)
                      .           ++.|++.|+++.               +++|++.+  +.+ .+   .++|++||...+.++.|+. ++
T Consensus       147 ~-----------Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~n--p~eg~l---~~~LldRf~l~i~l~~p~~~ee  210 (337)
T TIGR02030       147 L-----------VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGN--PEEGEL---RPQLLDRFGLHAEIRTVRDVEL  210 (337)
T ss_pred             H-----------HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccc--cccCCC---CHHHHhhcceEEECCCCCCHHH
Confidence            4           488888886542               34444433  323 22   7889999999999999986 88


Q ss_pred             HHHHHHHHH
Q 013706          341 LAKILHIKM  349 (438)
Q Consensus       341 ~~~il~~~l  349 (438)
                      +.+|+++..
T Consensus       211 r~eIL~~~~  219 (337)
T TIGR02030       211 RVEIVERRT  219 (337)
T ss_pred             HHHHHHhhh
Confidence            899998743

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK09087 hypothetical protein; Validated

Probab=99.55  E-value=1.4e-13  Score=122.66  Aligned_cols=179  Identities=12%  Similarity=0.086  Sum_probs=120.1

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ  278 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~  278 (438)
                      .+.++|+||+|+|||.+++++++....         ..++..++..           ..+.......|+|||++.+... 
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~~---------~~i~~~~~~~-----------~~~~~~~~~~l~iDDi~~~~~~-  102 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSDA---------LLIHPNEIGS-----------DAANAAAEGPVLIEDIDAGGFD-  102 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcCC---------EEecHHHcch-----------HHHHhhhcCeEEEECCCCCCCC-
Confidence            345899999999999999999875321         2233222221           1223333478999999977321 


Q ss_pred             CCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcccccc
Q 013706          279 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDS  356 (438)
Q Consensus       279 ~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~~  356 (438)
                      +       ......+-...+.++.+++.+++.++....  ..|.|++||  ...+++.+|+.+++.+++++.+....   
T Consensus       103 ~-------~~lf~l~n~~~~~g~~ilits~~~p~~~~~--~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~---  170 (226)
T PRK09087        103 E-------TGLFHLINSVRQAGTSLLMTSRLWPSSWNV--KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ---  170 (226)
T ss_pred             H-------HHHHHHHHHHHhCCCeEEEECCCChHHhcc--ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC---
Confidence            1       133344444445577777777665554433  268899999  58999999999999999999997642   


Q ss_pred             ccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          357 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                              ..++++++..++.+.       .++.+.+..++++..+.+          ...-+.+|...++++++.+.-
T Consensus       171 --------~~l~~ev~~~La~~~-------~r~~~~l~~~l~~L~~~~----------~~~~~~it~~~~~~~l~~~~~  224 (226)
T PRK09087        171 --------LYVDPHVVYYLVSRM-------ERSLFAAQTIVDRLDRLA----------LERKSRITRALAAEVLNEMGQ  224 (226)
T ss_pred             --------CCCCHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHH----------HHhCCCCCHHHHHHHHHhhcc
Confidence                    346788888888876       456666766666554433          112256888888888887643

>PRK06620 hypothetical protein; Validated

Probab=99.54  E-value=7.9e-14  Score=123.13  Aligned_cols=167  Identities=12%  Similarity=0.076  Sum_probs=111.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK  279 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~  279 (438)
                      ..++||||||+|||.+++++++....       .++.  ....           ....+  ....+|+|||||.+.   +
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-----------~~~~~--~~~d~lliDdi~~~~---~   99 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-----------NEEIL--EKYNAFIIEDIENWQ---E   99 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-----------chhHH--hcCCEEEEeccccch---H
Confidence            67999999999999999998875421       1111  0000           00111  234799999999541   0


Q ss_pred             CCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccccccc
Q 013706          280 ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDSL  357 (438)
Q Consensus       280 ~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~~~  357 (438)
                             ......+-...+.+..+++++++.++..   .. |+|++|+  ..++.+.+|+.+++..++++.....     
T Consensus       100 -------~~lf~l~N~~~e~g~~ilits~~~p~~l---~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-----  163 (214)
T PRK06620        100 -------PALLHIFNIINEKQKYLLLTSSDKSRNF---TL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-----  163 (214)
T ss_pred             -------HHHHHHHHHHHhcCCEEEEEcCCCcccc---ch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-----
Confidence                   1233333333466777777777666632   23 7899999  3489999999999999999887753     


Q ss_pred             cccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          358 LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                        +    ..++++++..++.+.       .++.|.+.++++.....+.          ...+.||.+.+++++
T Consensus       164 --~----l~l~~ev~~~L~~~~-------~~d~r~l~~~l~~l~~~~~----------~~~~~it~~~~~~~l  213 (214)
T PRK06620        164 --S----VTISRQIIDFLLVNL-------PREYSKIIEILENINYFAL----------ISKRKITISLVKEVL  213 (214)
T ss_pred             --C----CCCCHHHHHHHHHHc-------cCCHHHHHHHHHHHHHHHH----------HcCCCCCHHHHHHHh
Confidence              2    346778888888876       6888999999888643321          112457777777665

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.54  E-value=3.1e-13  Score=132.45  Aligned_cols=181  Identities=11%  Similarity=0.089  Sum_probs=120.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccch---HHHHHHHHHc-cCcEEEEeCcccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG---PKTRRRIKEA-EGGILFVDEAYRL  274 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~a-~~~il~iDEid~l  274 (438)
                      ..+++||||+|+|||.|++++++++....  ....++.+++.++...+.....   ..+....+.. ..-+|+|||++.+
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~--~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l  218 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKNYIESNF--SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFL  218 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccc
Confidence            45799999999999999999999875321  1235667777776665443211   1222333332 3369999999988


Q ss_pred             cCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcc
Q 013706          275 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~  352 (438)
                      ..+..     ........+-..++.++.+|+.+........  ..++.|++||  +..+.+.+|+.+++.+|+++.+...
T Consensus       219 ~~k~~-----~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~--~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~  291 (450)
T PRK14087        219 SYKEK-----TNEIFFTIFNNFIENDKQLFFSSDKSPELLN--GFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ  291 (450)
T ss_pred             cCCHH-----HHHHHHHHHHHHHHcCCcEEEECCCCHHHHh--hccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence            64321     1122333333334555544444433332222  2278899999  6789999999999999999998763


Q ss_pred             ccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          353 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                             |+  ...++++++..++...       .++.|.+.+++.++...+
T Consensus       292 -------gl--~~~l~~evl~~Ia~~~-------~gd~R~L~gaL~~l~~~a  327 (450)
T PRK14087        292 -------NI--KQEVTEEAINFISNYY-------SDDVRKIKGSVSRLNFWS  327 (450)
T ss_pred             -------CC--CCCCCHHHHHHHHHcc-------CCCHHHHHHHHHHHHHHH
Confidence                   22  1257888888888876       688999999999887444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.53  E-value=4.9e-15  Score=128.85  Aligned_cols=120  Identities=29%  Similarity=0.350  Sum_probs=104.0

Q ss_pred             HHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcH
Q 013706           12 AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY   91 (438)
Q Consensus        12 ~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   91 (438)
                      |..|+.--|++.|+.   ..-+.|.-|..|.+||||||..||..+++.|+.+|+.+|..+.-..||||+|+    .+|+.
T Consensus         8 cregna~qvrlwld~---tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaa----ahghr   80 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDD---TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAA----AHGHR   80 (448)
T ss_pred             hhcCCeEEEEEEecC---cccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhh----hcccH
Confidence            445555556666662   56788999999999999999999999999999999999999999999999999    89999


Q ss_pred             HHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           92 ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        92 ~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      +++..|+...+|+|.++..|+||| |.+|-++...+.+=|...|+...
T Consensus        81 divqkll~~kadvnavnehgntpl-hyacfwgydqiaedli~~ga~v~  127 (448)
T KOG0195|consen   81 DIVQKLLSRKADVNAVNEHGNTPL-HYACFWGYDQIAEDLISCGAAVN  127 (448)
T ss_pred             HHHHHHHHHhcccchhhccCCCch-hhhhhhcHHHHHHHHHhccceee
Confidence            999999999999999999999999 55555788888888887776543

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=99.53  E-value=2.9e-14  Score=141.60  Aligned_cols=183  Identities=20%  Similarity=0.237  Sum_probs=130.1

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-----ccccchH-------HHHHHHHHccCc
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTGP-------KTRRRIKEAEGG  264 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~  264 (438)
                      .....++++|++||||+++|++++...    .....+|+.++|+.+...     .+|+...       .....+..|.+|
T Consensus       160 ~~~~~vli~ge~g~gk~~~a~~ih~~s----~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g  235 (441)
T PRK10365        160 PSEATVLIHGDSGTGKELVARAIHASS----ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG  235 (441)
T ss_pred             CCCCeEEEEecCCCCHHHHHHHHHHcC----CCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence            355789999999999999999999843    334569999999865332     3443211       112346778899


Q ss_pred             EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------------CEEEEEecCChhHHHHhh--hCcCccCCC-C
Q 013706          265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-T  328 (438)
Q Consensus       265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~  328 (438)
                      +||||||+.|.+..|           ..|+..++++             ++.+|++|+.+....+..  ..+.|..|+ .
T Consensus       236 tl~ldei~~l~~~~q-----------~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~  304 (441)
T PRK10365        236 TLFLDEIGDISPMMQ-----------VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV  304 (441)
T ss_pred             EEEEeccccCCHHHH-----------HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc
Confidence            999999999998555           7888888764             346888877766544311  112233355 4


Q ss_pred             cceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          329 KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       329 ~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ..|.+|++..  +++..++..++.+....   ++ .-...++++++..+..+.|      |||.|+|++++++++..+
T Consensus       305 ~~i~~ppLreR~~Di~~l~~~~l~~~~~~---~~-~~~~~~~~~a~~~L~~~~w------pgN~reL~~~~~~~~~~~  372 (441)
T PRK10365        305 VAIEVPSLRQRREDIPLLAGHFLQRFAER---NR-KAVKGFTPQAMDLLIHYDW------PGNIRELENAVERAVVLL  372 (441)
T ss_pred             ceecCCChhhcchhHHHHHHHHHHHHHHH---hC-CCCCCcCHHHHHHHHhCCC------CCHHHHHHHHHHHHHHhC
Confidence            5677777764  68888999998875421   11 1123478999999999999      999999999999988654

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.53  E-value=2.3e-13  Score=134.81  Aligned_cols=176  Identities=16%  Similarity=0.193  Sum_probs=117.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH--ccCcEEEEeCcccccCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPM  277 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~il~iDEid~l~~~  277 (438)
                      ..++|||++|+|||.|+.++++++...  .....++.++..++..++...........|.+  ....+|+|||++.+..+
T Consensus       315 NpL~LyG~sGsGKTHLL~AIa~~a~~~--~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk  392 (617)
T PRK14086        315 NPLFIYGESGLGKTHLLHAIGHYARRL--YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK  392 (617)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHHHh--CCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC
Confidence            359999999999999999999988541  11235677777777666543322211122322  13479999999998754


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCCEEEEEecCC-hhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcccc
Q 013706          278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTE  354 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~-~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~  354 (438)
                      ..     ....+++.|-...+.++-+||.++.. ..+..   .++.|++||  ..++.+..|+.+.+..||++...... 
T Consensus       393 e~-----tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~---l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~-  463 (617)
T PRK14086        393 ES-----TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVT---LEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-  463 (617)
T ss_pred             HH-----HHHHHHHHHHHHHhcCCCEEEecCCChHhhhh---ccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC-
Confidence            32     11233343334444455555544332 22222   378899999  77889999999999999999887642 


Q ss_pred             ccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          355 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                                ..++++++..++.+.       ..|.|.|..++.+....
T Consensus       464 ----------l~l~~eVi~yLa~r~-------~rnvR~LegaL~rL~a~  495 (617)
T PRK14086        464 ----------LNAPPEVLEFIASRI-------SRNIRELEGALIRVTAF  495 (617)
T ss_pred             ----------CCCCHHHHHHHHHhc-------cCCHHHHHHHHHHHHHH
Confidence                      446778888888876       57788888888876543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.53  E-value=3.1e-14  Score=141.08  Aligned_cols=108  Identities=15%  Similarity=0.071  Sum_probs=96.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCC--ChHHHHHHHcCCH---HHHHHHHHCCCCcccccCCCCcHH
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG--ETPLHMAAKNGCN---EAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g--~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      ...++|.||..|+.++|++|++    .|++++.+|..|  .||||+|+.....   +++++|+++|+++|.+|..|+|||
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs----~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPL  414 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILK----NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSIL  414 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHH----cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchH
Confidence            4567899999999999999999    799999999775  6999998776654   457889999999999999999999


Q ss_pred             HHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706           79 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS  119 (438)
Q Consensus        79 ~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a  119 (438)
                      |+|+    ..++.+++++|+++|++++.+|..|.||+++++
T Consensus       415 h~Aa----~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        415 YYCI----ESHSVSLVEWLIDNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             HHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            9999    889999999999999999999999999995553

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.52  E-value=2.5e-14  Score=141.30  Aligned_cols=124  Identities=33%  Similarity=0.416  Sum_probs=109.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccc-----------------------cCCCChHHHHHHHcCCHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-----------------------NMYGETPLHMAAKNGCNEAAK   58 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-----------------------d~~g~t~L~~A~~~g~~~~v~   58 (438)
                      +.|+||||+|+.+.+.++|++|++    .|+||+++                       -..|+.||-+||.-++.+|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~----~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivr  257 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLA----AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVR  257 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHH----cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHH
Confidence            469999999999999999999999    77887754                       235889999999999999999


Q ss_pred             HHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCC--CcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           59 LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD--CSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        59 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~--~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                      +|+++|||++++|.+|+|.||..+    ..-..++-.+++++|++  ..++|..|-||| -+|++-+..++.+.++..
T Consensus       258 lLl~~gAd~~aqDS~GNTVLH~lV----i~~~~~My~~~L~~ga~~l~~v~N~qgLTPL-tLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  258 LLLAHGADPNAQDSNGNTVLHMLV----IHFVTEMYDLALELGANALEHVRNNQGLTPL-TLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHhcCCCCCccccCCChHHHHHH----HHHHHHHHHHHHhcCCCccccccccCCCChH-HHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999888    55667888899999999  889999999999 666667788877777755

>smart00350 MCM minichromosome maintenance proteins

Probab=99.52  E-value=8.1e-14  Score=139.22  Aligned_cols=242  Identities=15%  Similarity=0.195  Sum_probs=142.1

Q ss_pred             hhhcChHHHHHHHHHHH-HHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE---e
Q 013706          162 SNIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE---V  237 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~---~  237 (438)
                      -.+.|++.+|..+.-.+ ....   .....+  .......|+||+|+||||||++||++++.+...      .++.   .
T Consensus       203 p~i~G~~~~k~~l~l~l~gg~~---~~~~~~--~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~------~~~~~~~~  271 (509)
T smart00350      203 PSIYGHEDIKKAILLLLFGGVH---KNLPDG--MKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA------VYTTGKGS  271 (509)
T ss_pred             ccccCcHHHHHHHHHHHhCCCc---cccCCC--ccccccceEEEeCCCChhHHHHHHHHHHHcCcc------eEcCCCCC
Confidence            45788888876665331 1100   000001  112234589999999999999999999976321      1111   1


Q ss_pred             eccccccc-----ccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC------------
Q 013706          238 QRTDLVGE-----FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------  300 (438)
Q Consensus       238 ~~~~~~~~-----~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------  300 (438)
                      ++..+...     ..|+- ..-...+..|.+|+++|||++.+.+..|           ..|++.|+.+            
T Consensus       272 ~~~~l~~~~~~~~~~g~~-~~~~G~l~~A~~Gil~iDEi~~l~~~~q-----------~~L~e~me~~~i~i~k~G~~~~  339 (509)
T smart00350      272 SAVGLTAAVTRDPETREF-TLEGGALVLADNGVCCIDEFDKMDDSDR-----------TAIHEAMEQQTISIAKAGITTT  339 (509)
T ss_pred             CcCCccccceEccCcceE-EecCccEEecCCCEEEEechhhCCHHHH-----------HHHHHHHhcCEEEEEeCCEEEE
Confidence            11112111     11110 0011245567889999999999987544           7888888653            


Q ss_pred             ---CEEEEEecCChhH--------HHHhhhCcCccCCCCcceeC-CCCCHHHHHHHHHHHHhccccc----ccc------
Q 013706          301 ---KVVVIFAGYSEPM--------KRVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKMNNQTED----SLL------  358 (438)
Q Consensus       301 ---~v~vi~~~~~~~~--------~~~~~~~p~l~~R~~~~i~~-~~~~~~e~~~il~~~l~~~~~~----~~~------  358 (438)
                         ...||+++++..-        ..-+...|++++|||..+.+ +.|+.+...+|+++.+......    ...      
T Consensus       340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~  419 (509)
T smart00350      340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPIS  419 (509)
T ss_pred             ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCC
Confidence               3467777665321        11123479999999886554 7888888888888865432100    000      


Q ss_pred             ---------cccc-ccccccHHHHHHHHHHHhhHhh---------hccccccchHHHHHHHHHHhhccccCCCCChhhhh
Q 013706          359 ---------YGFK-LHSSCSMDAIAALIEKETTEKQ---------RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELR  419 (438)
Q Consensus       359 ---------~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~  419 (438)
                               +--. +.+.+++++...+...|.....         ..+...|.+..++.-|...|..+.         ..
T Consensus       420 ~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~---------r~  490 (509)
T smart00350      420 QEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRL---------SD  490 (509)
T ss_pred             HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcC---------CC
Confidence                     0001 3456777777777666653221         112345677777776666664443         25


Q ss_pred             hccHHHHHHHHHHHHh
Q 013706          420 TITLEDLEAGLKLLLR  435 (438)
Q Consensus       420 ~i~~~d~~~a~~~~~~  435 (438)
                      .|+.+|+.+|++.+..
T Consensus       491 ~V~~~Dv~~ai~l~~~  506 (509)
T smart00350      491 VVEEADVEEAIRLLRE  506 (509)
T ss_pred             ccCHHHHHHHHHHHHH
Confidence            7999999999998753

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.51  E-value=5.3e-14  Score=119.42  Aligned_cols=111  Identities=16%  Similarity=0.346  Sum_probs=78.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHH-------HHccCcEEEEeC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI-------KEAEGGILFVDE  270 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~a~~~il~iDE  270 (438)
                      +..+++|.||+|||||.+|+++|+.++.   -...+++.++.+.+...  ++....+.+.+       ..+.++||||||
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~---~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDE   76 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFV---GSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDE   76 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT----SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEET
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhcc---CCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHH
Confidence            4467999999999999999999999873   12348888998877651  11111222222       233457999999


Q ss_pred             cccccCCCCCCCchhHHHHHHHHHhhccC-------------CCEEEEEecCChhH
Q 013706          271 AYRLIPMQKADDKDYGIEALEEIMSVMDG-------------GKVVVIFAGYSEPM  313 (438)
Q Consensus       271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~v~vi~~~~~~~~  313 (438)
                      ||++.++.+...+.....+++.||+.||+             +++++|++++-...
T Consensus        77 idKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~  132 (171)
T PF07724_consen   77 IDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE  132 (171)
T ss_dssp             GGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred             HhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence            99999984444455677899999999975             35688888764443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.51  E-value=1.1e-12  Score=114.79  Aligned_cols=192  Identities=18%  Similarity=0.240  Sum_probs=124.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++++|.+..++.|.+-....            +...+..|+||+|++|||||+++|++..++...|.    .++++.
T Consensus        24 ~~l~~L~Gie~Qk~~l~~Nt~~F------------l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GL----RlIev~   87 (249)
T PF05673_consen   24 IRLDDLIGIERQKEALIENTEQF------------LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGL----RLIEVS   87 (249)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHH------------HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc----eEEEEC
Confidence            46889999999999888765443            22347789999999999999999999999987664    678887


Q ss_pred             cccccccccccchHHHHHHHHH----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v~vi~~~  308 (438)
                      ..++..         +..+++.    -..-|||+|++. +-.  .  +     .--..|...||+      .+|++.+|+
T Consensus        88 k~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs-Fe~--~--d-----~~yk~LKs~LeGgle~~P~NvliyATS  148 (249)
T PF05673_consen   88 KEDLGD---------LPELLDLLRDRPYKFILFCDDLS-FEE--G--D-----TEYKALKSVLEGGLEARPDNVLIYATS  148 (249)
T ss_pred             HHHhcc---------HHHHHHHHhcCCCCEEEEecCCC-CCC--C--c-----HHHHHHHHHhcCccccCCCcEEEEEec
Confidence            766532         2333333    234799999852 211  1  1     222677777776      345665555


Q ss_pred             CChhHH-H-Hhhh--------C--------cCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Q 013706          309 YSEPMK-R-VIAS--------N--------EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  370 (438)
Q Consensus       309 ~~~~~~-~-~~~~--------~--------p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  370 (438)
                      |...+- . ....        +        =+|.+||...|.|.+|+.++-.+|++.++.+.       |+.+    +.+
T Consensus       149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~-------g~~~----~~e  217 (249)
T PF05673_consen  149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY-------GLEL----DEE  217 (249)
T ss_pred             chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc-------CCCC----CHH
Confidence            433221 1 1110        1        15677999999999999999999999999864       3443    334


Q ss_pred             HHHHHHHHHhhHhhhccccccchHHHHH
Q 013706          371 AIAALIEKETTEKQRREMNGGLVDPMLV  398 (438)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~  398 (438)
                      .+...+-.+.  .....-+||-.++.++
T Consensus       218 ~l~~~Al~wa--~~rg~RSGRtA~QF~~  243 (249)
T PF05673_consen  218 ELRQEALQWA--LRRGGRSGRTARQFID  243 (249)
T ss_pred             HHHHHHHHHH--HHcCCCCHHHHHHHHH
Confidence            4444443332  1112345666666554

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=2.2e-14  Score=135.36  Aligned_cols=118  Identities=26%  Similarity=0.428  Sum_probs=80.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHH--------------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY--------------  224 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~--------------  224 (438)
                      .+|.|++|++..|+.+.-.                  +....|+||+|||||||||+|+.+...|.              
T Consensus       176 ~D~~DV~GQ~~AKrAleiA------------------AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~  237 (490)
T COG0606         176 PDFKDVKGQEQAKRALEIA------------------AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIH  237 (490)
T ss_pred             cchhhhcCcHHHHHHHHHH------------------HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHh
Confidence            4799999999999998854                  23567999999999999999999976541              


Q ss_pred             -HcC-------CcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhh
Q 013706          225 -MVG-------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV  296 (438)
Q Consensus       225 -~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~  296 (438)
                       ..+       +....||..-+-+.....++|........-+..|.+|||||||+           .++.+.+++.|.+-
T Consensus       238 s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDEl-----------pef~~~iLe~LR~P  306 (490)
T COG0606         238 SLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDEL-----------PEFKRSILEALREP  306 (490)
T ss_pred             hhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeecc-----------chhhHHHHHHHhCc
Confidence             001       11222333322222233344443333334457789999999998           45556899999999


Q ss_pred             ccCCCEEEE
Q 013706          297 MDGGKVVVI  305 (438)
Q Consensus       297 ~~~~~v~vi  305 (438)
                      |+++++++-
T Consensus       307 LE~g~i~Is  315 (490)
T COG0606         307 LENGKIIIS  315 (490)
T ss_pred             cccCcEEEE
Confidence            998765443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.50  E-value=4.1e-14  Score=133.47  Aligned_cols=114  Identities=38%  Similarity=0.501  Sum_probs=100.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCC-----------------------------------------------------
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGN-----------------------------------------------------   29 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~-----------------------------------------------------   29 (438)
                      .||||||.|+..||..++++|+++++.                                                     
T Consensus       105 e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~  184 (527)
T KOG0505|consen  105 EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQW  184 (527)
T ss_pred             ccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHH
Confidence            589999999999999999999995333                                                     


Q ss_pred             --CCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCccc
Q 013706           30 --DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK  107 (438)
Q Consensus        30 --~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~  107 (438)
                        .|...+..+..|-|.||+|+.+|..++.++|++.|.+++.+|.+||||||.|+    ..|..+++++|+++|++++..
T Consensus       185 l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA----~Wg~~~~~elL~~~ga~~d~~  260 (527)
T KOG0505|consen  185 LNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAA----HWGQEDACELLVEHGADMDAK  260 (527)
T ss_pred             HhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHH----HhhhHhHHHHHHHhhcccchh
Confidence              23344555656999999999999999999999999999999999999999999    457899999999999999999


Q ss_pred             CCCCCcccccccc
Q 013706          108 DNEGKTPLDHLSN  120 (438)
Q Consensus       108 d~~g~t~l~~~a~  120 (438)
                      +..|.||++.+..
T Consensus       261 t~~g~~p~dv~de  273 (527)
T KOG0505|consen  261 TKMGETPLDVADE  273 (527)
T ss_pred             hhcCCCCccchhh
Confidence            9999999955443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.49  E-value=2.8e-13  Score=121.65  Aligned_cols=124  Identities=38%  Similarity=0.505  Sum_probs=114.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC-----HHHHHHHHHCCC---CcccccCCC
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC-----NEAAKLLLAHGA---FIEAKANNG   74 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~---~~~~~~~~g   74 (438)
                      .+.+++|.++..+...++++++.    .+.+++.+|..|.||||+|+..++     .++++.|++.|+   +.+.+|..|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLA----SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHH----cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            37899999999999999999998    789999999999999999999999     999999999999   666779999


Q ss_pred             CcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           75 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        75 ~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      .||||+|+    ..|+.+++..|+..|++++..+..|.|++ +.++..+...+...+...+
T Consensus       148 ~tpl~~A~----~~~~~~~~~~ll~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAA----LNGDADIVELLLEAGADPNSRNSYGVTAL-DPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHH----HcCchHHHHHHHhcCCCCcccccCCCcch-hhhcccchHHHHHHHHhcC
Confidence            99999999    78889999999999999999999999999 7777778888888887654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.48  E-value=7.8e-14  Score=125.25  Aligned_cols=123  Identities=27%  Similarity=0.359  Sum_probs=110.8

Q ss_pred             CCCcHHHHHHHc-----CCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCc
Q 013706            3 MAQTPLHVSAGY-----NKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT   76 (438)
Q Consensus         3 ~g~tpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t   76 (438)
                      .|+||+++|+..     .+..+|..|+..     .|+|++- ..|+|+||+|+..|+.++|+.|+..|+|+|.+|.+|.|
T Consensus       301 AGYtpiMLaALA~lk~~~d~~vV~~LF~m-----gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGST  375 (452)
T KOG0514|consen  301 AGYTPVMLAALAKLKQPADRTVVERLFKM-----GDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGST  375 (452)
T ss_pred             ccccHHHHHHHHhhcchhhHHHHHHHHhc-----cCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccH
Confidence            699999999964     578999999973     4678775 56999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccCcHHHHHHHHhC-CCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           77 PLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        77 ~L~~A~~~~~~~~~~~~~~~Ll~~-ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      +|++||    .+||.+++.+||.. ++|..+.|.+|-|+| .+|...++.++.-+|..+.
T Consensus       376 ALMCA~----EHGhkEivklLLA~p~cd~sLtD~DgSTAl-~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  376 ALMCAA----EHGHKEIVKLLLAVPSCDISLTDVDGSTAL-SIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             HHhhhh----hhChHHHHHHHhccCcccceeecCCCchhh-hhHHhcCchHHHHHHHHHH
Confidence            999999    99999999999976 999999999999999 8888888999888776554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.48  E-value=1.3e-13  Score=99.27  Aligned_cols=73  Identities=32%  Similarity=0.476  Sum_probs=68.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH   79 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   79 (438)
                      .|++|||+|+-+|+++++.+|+.    .|++++.+|++|-|||..|++.||.+||++|++.|++-..+..+|.+.+-
T Consensus        33 ggR~plhyAAD~GQl~ilefli~----iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLIS----IGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHH----hccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHh
Confidence            68999999999999999999999    89999999999999999999999999999999999998888888876654

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=99.47  E-value=8e-14  Score=135.70  Aligned_cols=175  Identities=18%  Similarity=0.239  Sum_probs=129.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc-----ccccccchHHH--------HHHHHHccCc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-----GEFVGHTGPKT--------RRRIKEAEGG  264 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~--------~~~~~~a~~~  264 (438)
                      ...++++.|.|||||..+||++++...     ..++|+.++|..+.     +++||..+...        +..+++|.+|
T Consensus       335 ~~~pvll~GEtGtGKe~laraiH~~s~-----~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG  409 (606)
T COG3284         335 TDLPVLLQGETGTGKEVLARAIHQNSE-----AAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG  409 (606)
T ss_pred             cCCCeEecCCcchhHHHHHHHHHhccc-----ccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC
Confidence            567899999999999999999998443     56799999997643     45676644333        3456778899


Q ss_pred             EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC------------CEEEEEecCChhHHHHhhhCcCcc----CCC-
Q 013706          265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------KVVVIFAGYSEPMKRVIASNEGFC----RRV-  327 (438)
Q Consensus       265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------~v~vi~~~~~~~~~~~~~~~p~l~----~R~-  327 (438)
                      +||+|||..|.-           .+...||+.++++            +|.||+||+.+--..+  .+-.++    -|+ 
T Consensus       410 tlFldeIgd~p~-----------~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv--~~g~fredLyyrL~  476 (606)
T COG3284         410 TLFLDEIGDMPL-----------ALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLV--EQGRFREDLYYRLN  476 (606)
T ss_pred             ccHHHHhhhchH-----------HHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHH--HcCCchHHHHHHhc
Confidence            999999988875           4558999999874            3577777665543322  133333    366 


Q ss_pred             CcceeCCCCCH-HHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          328 TKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       328 ~~~i~~~~~~~-~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ...|++|++.. .++...+.+++.+...        ....+++++++.+..+.|      |||.|+|+|+++.+.-..
T Consensus       477 ~~~i~lP~lr~R~d~~~~l~~~~~~~~~--------~~~~l~~~~~~~l~~~~W------PGNirel~~v~~~~~~l~  540 (606)
T COG3284         477 AFVITLPPLRERSDRIPLLDRILKREND--------WRLQLDDDALARLLAYRW------PGNIRELDNVIERLAALS  540 (606)
T ss_pred             CeeeccCchhcccccHHHHHHHHHHccC--------CCccCCHHHHHHHHhCCC------CCcHHHHHHHHHHHHHcC
Confidence            66788888764 5667777777776542        235678899999999999      999999999999887654

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=99.46  E-value=3e-13  Score=138.45  Aligned_cols=217  Identities=13%  Similarity=0.128  Sum_probs=130.2

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc---ccccchHHHHHHHHHccCcEEEEeCccc
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE---FVGHTGPKTRRRIKEAEGGILFVDEAYR  273 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~a~~~il~iDEid~  273 (438)
                      +...||||.|+||||||.+|+++++...........++..+.+......   ..|+- ..-...+..|.+|+++|||+++
T Consensus       490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~-~le~GaLvlAdgGtL~IDEidk  568 (915)
T PTZ00111        490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRA-MIQPGAVVLANGGVCCIDELDK  568 (915)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcc-cccCCcEEEcCCCeEEecchhh
Confidence            3456999999999999999999999654322223334444443332210   01110 0112345678889999999999


Q ss_pred             ccCCCCCCCchhHHHHHHHHHhhccCC---------------CEEEEEecCChh--------HHHHhhhCcCccCCCCcc
Q 013706          274 LIPMQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEP--------MKRVIASNEGFCRRVTKF  330 (438)
Q Consensus       274 l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------~v~vi~~~~~~~--------~~~~~~~~p~l~~R~~~~  330 (438)
                      +.+..|           ..|++.|+.+               ...||+|+++..        +..-+...|+|++|||.+
T Consensus       569 ms~~~Q-----------~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLI  637 (915)
T PTZ00111        569 CHNESR-----------LSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLI  637 (915)
T ss_pred             CCHHHH-----------HHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEE
Confidence            987544           7888888653               357888876531        112233468999999877


Q ss_pred             ee-CCCCCHHHHHHHHHHHHhccc---------c---------------c---------cc---c-----c-cccccccc
Q 013706          331 FH-FNDFNSEELAKILHIKMNNQT---------E---------------D---------SL---L-----Y-GFKLHSSC  367 (438)
Q Consensus       331 i~-~~~~~~~e~~~il~~~l~~~~---------~---------------~---------~~---~-----~-~~~~~~~~  367 (438)
                      +- ++.|+.+.=..|..+.++...         .               .         ..   .     | +-.+.|.+
T Consensus       638 f~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~L  717 (915)
T PTZ00111        638 YLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKL  717 (915)
T ss_pred             EEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCC
Confidence            55 566666544455444432110         0               0         00   0     0 11346777


Q ss_pred             cHHHHHHHHHHHhhHhhh------------------------------ccccccchHHHHHHHHHHhhccccCCCCChhh
Q 013706          368 SMDAIAALIEKETTEKQR------------------------------REMNGGLVDPMLVNARENLDLRLSFDCLDTDE  417 (438)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~------------------------------~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~  417 (438)
                      ++++-..+...|..-...                              -+...|.|..++.-+...|..|+.        
T Consensus       718 s~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs--------  789 (915)
T PTZ00111        718 SDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLS--------  789 (915)
T ss_pred             CHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCc--------
Confidence            888877776655421110                              123457777777766656544444        


Q ss_pred             hhhccHHHHHHHHHHHH
Q 013706          418 LRTITLEDLEAGLKLLL  434 (438)
Q Consensus       418 ~~~i~~~d~~~a~~~~~  434 (438)
                       ..|+.+|+.+|++.++
T Consensus       790 -~~Vt~~Dv~~Ai~L~~  805 (915)
T PTZ00111        790 -TVVTPADALQAVQIVK  805 (915)
T ss_pred             -CcccHHHHHHHHHHHH
Confidence             4688999999988875

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.46  E-value=1.6e-13  Score=131.99  Aligned_cols=151  Identities=16%  Similarity=0.199  Sum_probs=95.0

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc-
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-  240 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-  240 (438)
                      ..++|.+++++.+...                  .....++||+||||||||++|+++|+.+...+     +|....+. 
T Consensus        20 ~~i~gre~vI~lll~a------------------alag~hVLL~GpPGTGKT~LAraLa~~~~~~~-----~F~~~~~~f   76 (498)
T PRK13531         20 KGLYERSHAIRLCLLA------------------ALSGESVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLMTRF   76 (498)
T ss_pred             hhccCcHHHHHHHHHH------------------HccCCCEEEECCCChhHHHHHHHHHHHhcccC-----cceeeeeee
Confidence            3578998888877754                  23568999999999999999999999765322     23222221 


Q ss_pred             cccccccccc-hHHH--HHHHHHc------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC----------
Q 013706          241 DLVGEFVGHT-GPKT--RRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------  301 (438)
Q Consensus       241 ~~~~~~~g~~-~~~~--~~~~~~a------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----------  301 (438)
                      ......+|.. -...  ...|...      ...+||+|||..+.++           +++.||+.|+++.          
T Consensus        77 ttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~-----------~QsaLLeam~Er~~t~g~~~~~l  145 (498)
T PRK13531         77 STPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPA-----------ILNTLLTAINERRFRNGAHEEKI  145 (498)
T ss_pred             cCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHH-----------HHHHHHHHHHhCeEecCCeEEeC
Confidence            1123444532 1111  1223211      1138999999988874           4499999996532          


Q ss_pred             --EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCH-HHHHHHHHHH
Q 013706          302 --VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIK  348 (438)
Q Consensus       302 --v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~-~e~~~il~~~  348 (438)
                        .++++||+  +...--...+++..||-..+.+|+|+. ++..+|+...
T Consensus       146 p~rfiv~ATN--~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~  193 (498)
T PRK13531        146 PMRLLVTASN--ELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ  193 (498)
T ss_pred             CCcEEEEECC--CCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence              35555553  221100013578999988999999974 5667888764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.45  E-value=1.7e-13  Score=103.90  Aligned_cols=86  Identities=40%  Similarity=0.562  Sum_probs=77.0

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCc
Q 013706           45 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS  124 (438)
Q Consensus        45 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~  124 (438)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+    ..|+.+++++|+++|++++..|.+|+||| +.|+..++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAA----ENGNLEIVKLLLENGADINSQDKNGNTAL-HYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHH----HTTTHHHHHHHHHTTTCTT-BSTTSSBHH-HHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHH----HcCCHHHHHHHHHhcccccccCCCCCCHH-HHHHHcCC
Confidence            7999999999999999999988877    889999999    88999999999999999999999999999 55666889


Q ss_pred             hhHHHHHHhccchHH
Q 013706          125 AKLRELLLWHSEEQR  139 (438)
Q Consensus       125 ~~~~~lL~~~~~~~~  139 (438)
                      .+++++|+..+.+..
T Consensus        72 ~~~~~~Ll~~g~~~~   86 (89)
T PF12796_consen   72 LEIVKLLLEHGADVN   86 (89)
T ss_dssp             HHHHHHHHHTTT-TT
T ss_pred             HHHHHHHHHcCCCCC
Confidence            999999998876643

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=2e-13  Score=92.64  Aligned_cols=54  Identities=50%  Similarity=0.667  Sum_probs=38.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHH
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL   61 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   61 (438)
                      |.||||+||..|+.+++++|++    .+.++|.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~----~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLE----HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHH----TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            6788888888888888888887    57778888888888888888888888888775

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=8.4e-14  Score=94.98  Aligned_cols=51  Identities=47%  Similarity=0.751  Sum_probs=33.3

Q ss_pred             CcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706           31 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus        31 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..+++.+|..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            388999999999999999999999999999999999999999999999987

>PRK09862 putative ATP-dependent protease; Provisional

Probab=99.45  E-value=5.9e-13  Score=130.49  Aligned_cols=151  Identities=21%  Similarity=0.274  Sum_probs=100.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc-------------
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV-------------  226 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~-------------  226 (438)
                      .+.++.|+..+++.+.-                  ......+++|+||||+|||++++.++..+...             
T Consensus       189 d~~~v~Gq~~~~~al~l------------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s  250 (506)
T PRK09862        189 DLSDVIGQEQGKRGLEI------------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS  250 (506)
T ss_pred             CeEEEECcHHHHhhhhe------------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence            67788888776665432                  13356789999999999999999998754210             


Q ss_pred             --CC------cCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706          227 --GI------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  298 (438)
Q Consensus       227 --~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  298 (438)
                        |.      ....||...+.+.-....+|.........+..|.+|||||||++.+.+           .++..|++.|+
T Consensus       251 ~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~-----------~~~~~L~~~LE  319 (506)
T PRK09862        251 LVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFER-----------RTLDALREPIE  319 (506)
T ss_pred             hhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCH-----------HHHHHHHHHHH
Confidence              00      012233322222222234554333445678999999999999988765           55688888886


Q ss_pred             CCC---------------EEEEEecCChhHHH----------------HhhhCcCccCCCCcceeCCCCCHH
Q 013706          299 GGK---------------VVVIFAGYSEPMKR----------------VIASNEGFCRRVTKFFHFNDFNSE  339 (438)
Q Consensus       299 ~~~---------------v~vi~~~~~~~~~~----------------~~~~~p~l~~R~~~~i~~~~~~~~  339 (438)
                      ++.               +.+|+++++.+-..                .-...+++++|||..+.+++++.+
T Consensus       320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~  391 (506)
T PRK09862        320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG  391 (506)
T ss_pred             cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence            543               57888877664110                112356899999999999998765

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.44  E-value=2.4e-12  Score=121.86  Aligned_cols=158  Identities=18%  Similarity=0.217  Sum_probs=100.2

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC-----c-CC
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI-----L-PT  231 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~-----~-~~  231 (438)
                      ...+++++|++.+++.+...+..               ...+..+||+||+|+|||++|+.+|+.+.....     . ..
T Consensus        19 P~~~~~l~Gh~~a~~~L~~a~~~---------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~   83 (351)
T PRK09112         19 PSENTRLFGHEEAEAFLAQAYRE---------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA   83 (351)
T ss_pred             CCchhhccCcHHHHHHHHHHHHc---------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC
Confidence            35788999999999999886431               123345899999999999999999998864110     0 00


Q ss_pred             CCEEEeec---------cccc--cc----ccc--c---chHHHHHH---HHHc----cCcEEEEeCcccccCCCCCCCch
Q 013706          232 DRVTEVQR---------TDLV--GE----FVG--H---TGPKTRRR---IKEA----EGGILFVDEAYRLIPMQKADDKD  284 (438)
Q Consensus       232 ~~~~~~~~---------~~~~--~~----~~g--~---~~~~~~~~---~~~a----~~~il~iDEid~l~~~~~~~~~~  284 (438)
                      .+.-.+..         .++.  ..    --|  .   +-..++.+   |...    ...|++|||+|.|..        
T Consensus        84 ~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------  155 (351)
T PRK09112         84 DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------  155 (351)
T ss_pred             CCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH--------
Confidence            01000000         0110  00    000  0   11223332   2221    236999999999976        


Q ss_pred             hHHHHHHHHHhhccC--C-CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHH
Q 013706          285 YGIEALEEIMSVMDG--G-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK  348 (438)
Q Consensus       285 ~~~~~~~~ll~~~~~--~-~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~  348 (438)
                         ...|.||..+++  . .+++++++.+.   .+   .|.+++|+ ..+.|++|+.++..+++...
T Consensus       156 ---~aanaLLk~LEEpp~~~~fiLit~~~~---~l---lptIrSRc-~~i~l~pl~~~~~~~~L~~~  212 (351)
T PRK09112        156 ---NAANAILKTLEEPPARALFILISHSSG---RL---LPTIRSRC-QPISLKPLDDDELKKALSHL  212 (351)
T ss_pred             ---HHHHHHHHHHhcCCCCceEEEEECChh---hc---cHHHHhhc-cEEEecCCCHHHHHHHHHHh
Confidence               344889999987  3 34444443333   22   68899998 89999999999999999873

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.43  E-value=3.4e-13  Score=124.07  Aligned_cols=136  Identities=15%  Similarity=0.088  Sum_probs=93.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc--ccccchHH----------HHHHHHH--ccCc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--FVGHTGPK----------TRRRIKE--AEGG  264 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~----------~~~~~~~--a~~~  264 (438)
                      ..+++|.||||||||++|+.+|+.++.       +++.+++...+..  ++|.....          ....+..  ..++
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~-------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~  136 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNW-------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNV  136 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCC-------CeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCe
Confidence            468999999999999999999999987       7777776543332  45542111          1112322  2567


Q ss_pred             EEEEeCcccccCCCCCCCchhHHHHHHHHHhh-----ccC--------CCEEEEEecCChh-------HHHHhhhCcCcc
Q 013706          265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSV-----MDG--------GKVVVIFAGYSEP-------MKRVIASNEGFC  324 (438)
Q Consensus       265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~-----~~~--------~~v~vi~~~~~~~-------~~~~~~~~p~l~  324 (438)
                      +|++||+|...++.+        .+++.+|+.     +.+        ..+.||++.|+..       +.-....+++++
T Consensus       137 illlDEin~a~p~~~--------~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l  208 (327)
T TIGR01650       137 ALCFDEYDAGRPDVM--------FVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM  208 (327)
T ss_pred             EEEechhhccCHHHH--------HHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence            899999999876433        334444442     111        2357788777644       333334478999


Q ss_pred             CCCCcceeCCCCCHHHHHHHHHHHH
Q 013706          325 RRVTKFFHFNDFNSEELAKILHIKM  349 (438)
Q Consensus       325 ~R~~~~i~~~~~~~~e~~~il~~~l  349 (438)
                      +||-.++.++.|+.++-.+|+....
T Consensus       209 DRF~i~~~~~Yp~~e~E~~Il~~~~  233 (327)
T TIGR01650       209 DRWSIVTTLNYLEHDNEAAIVLAKA  233 (327)
T ss_pred             hheeeEeeCCCCCHHHHHHHHHhhc
Confidence            9998788999999999999998654

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.42  E-value=3.3e-13  Score=133.81  Aligned_cols=124  Identities=15%  Similarity=0.063  Sum_probs=105.1

Q ss_pred             CCCcHHHHHH-HcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHH-cCCHHHHHHHHHCCCCcc------------
Q 013706            3 MAQTPLHVSA-GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK-NGCNEAAKLLLAHGAFIE------------   68 (438)
Q Consensus         3 ~g~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~~~------------   68 (438)
                      +|.+|+|+-| ..|++++|++|+.    +|+++|.+++.|.||+|+|+. .++.+++++|+++||++.            
T Consensus        70 ~~~~~~~~~~s~n~~lElvk~LI~----~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~  145 (631)
T PHA02792         70 NDFDIFEYLCSDNIDIELLKLLIS----KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIE  145 (631)
T ss_pred             CCccHHHHHHHhcccHHHHHHHHH----cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhh
Confidence            5778887655 5689999999999    799999999999999999976 699999999999998732            


Q ss_pred             ------------------------cccCCCCcHHHHHhhcccccC-------cHHHHHHHHhCCCCCcccCCCCCccccc
Q 013706           69 ------------------------AKANNGMTPLHLSVWYSIRSE-------DYATVKTLLEYNADCSAKDNEGKTPLDH  117 (438)
Q Consensus        69 ------------------------~~~~~g~t~L~~A~~~~~~~~-------~~~~~~~Ll~~ga~~~~~d~~g~t~l~~  117 (438)
                                              ..|..|.||||+|+    .++       +.++++.|+.+|++++..|..|.||||+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i----~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~  221 (631)
T PHA02792        146 QITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYI----ITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYY  221 (631)
T ss_pred             hcccccccchhhhccccccccccccCCCCCCchHHHHH----hhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHH
Confidence                                    34557999999999    566       7999999999999999999999999966


Q ss_pred             cccCCC-chhHHHHHHhc
Q 013706          118 LSNGPG-SAKLRELLLWH  134 (438)
Q Consensus       118 ~a~~~~-~~~~~~lL~~~  134 (438)
                      ++.... ..+++++|...
T Consensus       222 ~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        222 YVDKCDIKREIFDALFDS  239 (631)
T ss_pred             HHHcccchHHHHHHHHhc
Confidence            555331 67788888764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.42  E-value=3.6e-12  Score=117.90  Aligned_cols=204  Identities=18%  Similarity=0.190  Sum_probs=124.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE--eeccccc---ccccccc-----hH----HHHHHH----HH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE--VQRTDLV---GEFVGHT-----GP----KTRRRI----KE  260 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~--~~~~~~~---~~~~g~~-----~~----~~~~~~----~~  260 (438)
                      +..++|+||||+|||++++.+++.+....+. ....+.  .+..++.   ...+|..     ..    .+...+    ..
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~-~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~  121 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQERVV-AAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA  121 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE-EeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            3458899999999999999999877521110 000000  1111111   1112221     11    122212    12


Q ss_pred             ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-C-CEEEEEecCChhHHHHhh-hCcCccCCCCcceeCCCCC
Q 013706          261 AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-G-KVVVIFAGYSEPMKRVIA-SNEGFCRRVTKFFHFNDFN  337 (438)
Q Consensus       261 a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~-~v~vi~~~~~~~~~~~~~-~~p~l~~R~~~~i~~~~~~  337 (438)
                      .+..+|+|||++.+.+.        ..+.+..|.....+ . .+.|++++.+.....+.. ....+.+|+...+++++++
T Consensus       122 ~~~~vliiDe~~~l~~~--------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~  193 (269)
T TIGR03015       122 GKRALLVVDEAQNLTPE--------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD  193 (269)
T ss_pred             CCCeEEEEECcccCCHH--------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC
Confidence            24579999999988642        12333444333322 2 345566665544333311 1134677888899999999


Q ss_pred             HHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhh
Q 013706          338 SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDE  417 (438)
Q Consensus       338 ~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~  417 (438)
                      .+|..+++...+....       ..-...++++++..+.+..       .|+.+.+..++..+...+..+         +
T Consensus       194 ~~e~~~~l~~~l~~~g-------~~~~~~~~~~~~~~i~~~s-------~G~p~~i~~l~~~~~~~a~~~---------~  250 (269)
T TIGR03015       194 REETREYIEHRLERAG-------NRDAPVFSEGAFDAIHRFS-------RGIPRLINILCDRLLLSAFLE---------E  250 (269)
T ss_pred             HHHHHHHHHHHHHHcC-------CCCCCCcCHHHHHHHHHHc-------CCcccHHHHHHHHHHHHHHHc---------C
Confidence            9999999998887532       2222347788888888765       688899999999988876332         3


Q ss_pred             hhhccHHHHHHHHHHHH
Q 013706          418 LRTITLEDLEAGLKLLL  434 (438)
Q Consensus       418 ~~~i~~~d~~~a~~~~~  434 (438)
                      ...|+.+++..++..++
T Consensus       251 ~~~i~~~~v~~~~~~~~  267 (269)
T TIGR03015       251 KREIGGEEVREVIAEID  267 (269)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            35799999999998875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=99.41  E-value=2e-12  Score=130.40  Aligned_cols=128  Identities=16%  Similarity=0.233  Sum_probs=80.3

Q ss_pred             HHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------------------CEEEEEecCChhH
Q 013706          257 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM  313 (438)
Q Consensus       257 ~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~v~vi~~~~~~~~  313 (438)
                      .|.+|.+|+|||||++.|.+..           ...|++.|+++                       ++.+|++++++..
T Consensus       221 ~L~kAnGGtL~LDei~~L~~~~-----------q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll  289 (637)
T PRK13765        221 AIHKAHKGVLFIDEINTLDLES-----------QQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL  289 (637)
T ss_pred             ceeECCCcEEEEeChHhCCHHH-----------HHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH
Confidence            4567788999999999996533           36777777432                       3578888888655


Q ss_pred             HHHhhhCcCccCCCC---cceeCCCC---CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc-
Q 013706          314 KRVIASNEGFCRRVT---KFFHFNDF---NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR-  386 (438)
Q Consensus       314 ~~~~~~~p~l~~R~~---~~i~~~~~---~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  386 (438)
                      ..+   +|+|+.||.   ..+.|+.-   +.+.+..+++ ++.+...     .....+.++.+++..++++++.....+ 
T Consensus       290 ~~~---dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~-~iaqe~~-----~~G~l~~f~~eAVa~LI~~~~R~ag~r~  360 (637)
T PRK13765        290 ENM---HPALRSRIKGYGYEVYMRDTMEDTPENRRKLVR-FVAQEVK-----RDGKIPHFDRDAVEEIIREAKRRAGRKG  360 (637)
T ss_pred             Hhh---hHHHHHHhccCeEEEEcccccCCCHHHHHHHHH-HHHHHhh-----hccCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence            554   899999985   55666542   2445555554 3333211     001224689999999999887432211 


Q ss_pred             --cccccchHHHHHHHHHHh
Q 013706          387 --EMNGGLVDPMLVNARENL  404 (438)
Q Consensus       387 --~~n~~~l~~~~~~a~~~~  404 (438)
                        ....+++.+++..|...+
T Consensus       361 ~lsl~~~~l~~l~r~a~~~a  380 (637)
T PRK13765        361 HLTLKLRDLGGLVRVAGDIA  380 (637)
T ss_pred             ccccCHHHHHHHHHHHHHHH
Confidence              123466777777665444

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=5e-13  Score=125.23  Aligned_cols=118  Identities=25%  Similarity=0.295  Sum_probs=99.2

Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhccc
Q 013706            7 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI   86 (438)
Q Consensus         7 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   86 (438)
                      -|.-|+..|.+++|+.++.    .-.|+...+..|-|+||.|+..||.++|++|++.|+++|+.|.+||||||+|+    
T Consensus       553 LLLDaaLeGEldlVq~~i~----ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAA----  624 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIY----EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAA----  624 (752)
T ss_pred             HHHhhhhcchHHHHHHHHH----hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhh----
Confidence            3566889999999999987    45567788899999999999999999999999999999999999999999999    


Q ss_pred             ccCcHHHHHHHHhCCCCCcccC-CCCCccccccc-cCCCchhHHHHHH
Q 013706           87 RSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLS-NGPGSAKLRELLL  132 (438)
Q Consensus        87 ~~~~~~~~~~Ll~~ga~~~~~d-~~g~t~l~~~a-~~~~~~~~~~lL~  132 (438)
                      .-++..+|+.|++.|+-+.... .++.||.+-+- ...|+..|.++|.
T Consensus       625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             hcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            7789999999999998876543 57788873321 3345677777775

>PHA02244 ATPase-like protein

Probab=99.41  E-value=3.9e-12  Score=118.30  Aligned_cols=124  Identities=20%  Similarity=0.173  Sum_probs=78.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc---cchHHH-HHHHH-HccCcEEEEeCcc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKT-RRRIK-EAEGGILFVDEAY  272 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~-~~~~~-~a~~~il~iDEid  272 (438)
                      ...+++|+||||||||++|+++|..++.       +++.++...-.....|   ....-. ..++. .+.+++|||||++
T Consensus       118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~-------pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId  190 (383)
T PHA02244        118 ANIPVFLKGGAGSGKNHIAEQIAEALDL-------DFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEID  190 (383)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcC
Confidence            4568999999999999999999998765       6766653211111122   111100 11122 3578999999999


Q ss_pred             cccCCCCCCCchhHHHHHHHHHhhccC-------------CCEEEEEecCChh--HHHH----hhhCcCccCCCCcceeC
Q 013706          273 RLIPMQKADDKDYGIEALEEIMSVMDG-------------GKVVVIFAGYSEP--MKRV----IASNEGFCRRVTKFFHF  333 (438)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~v~vi~~~~~~~--~~~~----~~~~p~l~~R~~~~i~~  333 (438)
                      .+.+..+           ..|...+++             .++.+|+++++..  +..+    -..++++++|| ..|+|
T Consensus       191 ~a~p~vq-----------~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~  258 (383)
T PHA02244        191 ASIPEAL-----------IIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEF  258 (383)
T ss_pred             cCCHHHH-----------HHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeC
Confidence            9886433           445555542             3568888777631  1111    12378999999 67999


Q ss_pred             CCCCHHH
Q 013706          334 NDFNSEE  340 (438)
Q Consensus       334 ~~~~~~e  340 (438)
                      +.|+..|
T Consensus       259 dyp~~~E  265 (383)
T PHA02244        259 DYDEKIE  265 (383)
T ss_pred             CCCcHHH
Confidence            9988433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.40  E-value=5.3e-13  Score=140.74  Aligned_cols=78  Identities=36%  Similarity=0.365  Sum_probs=65.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCccccc--------------CCCCcHHHHHhhcccccCcHHHHHHHHhCCCCC
Q 013706           39 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--------------NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC  104 (438)
Q Consensus        39 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~  104 (438)
                      ..|.||||+|+.+|+.+++++|+++|++++.++              ..|.||||+|+    ..++.+++++|++.|+++
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa----~~~~~~iv~lLl~~gadi  201 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAA----CLGSPSIVALLSEDPADI  201 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHH----HhCCHHHHHHHhcCCcch
Confidence            458899999999999999999999999988653              25889999988    778899999999999999


Q ss_pred             cccCCCCCcccccccc
Q 013706          105 SAKDNEGKTPLDHLSN  120 (438)
Q Consensus       105 ~~~d~~g~t~l~~~a~  120 (438)
                      +..|..|+||+|.++.
T Consensus       202 n~~d~~g~T~Lh~A~~  217 (743)
T TIGR00870       202 LTADSLGNTLLHLLVM  217 (743)
T ss_pred             hhHhhhhhHHHHHHHh
Confidence            9999999999944444

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.7e-12  Score=130.29  Aligned_cols=208  Identities=25%  Similarity=0.314  Sum_probs=156.7

Q ss_pred             CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc---CcEEEEeC
Q 013706          194 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDE  270 (438)
Q Consensus       194 ~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDE  270 (438)
                      ....++.+++++||||||||+++++++.. .      . .+..+++....+++.|+++...+..|+.+.   ++++|+||
T Consensus        13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~   84 (494)
T COG0464          13 LGIEPPKGVLLHGPPGTGKTLLARALANE-G------A-EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE   84 (494)
T ss_pred             hCCCCCCCceeeCCCCCchhHHHHHHHhc-c------C-cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence            34568899999999999999999999986 1      1 337788889999999999999999998874   38999999


Q ss_pred             cccccCCCCCCCchhHHHHHHHHHhhccCC---CEEEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHH
Q 013706          271 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---KVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKIL  345 (438)
Q Consensus       271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~---~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il  345 (438)
                      +|.+.+.++.........++.+++..+++.   .+.++..++....  +   +|++++  ||+..+.++.++...+.+|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~--~---~~a~~~~~~~~~~~~~~~~~~~~~~ei~  159 (494)
T COG0464          85 IDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDG--L---DPAKRRPGRFDREIEVNLPDEAGRLEIL  159 (494)
T ss_pred             hhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccc--c---ChhHhCccccceeeecCCCCHHHHHHHH
Confidence            999999988756667788999999999863   3666655433332  2   676666  99999999999999888888


Q ss_pred             HHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHH
Q 013706          346 HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLED  425 (438)
Q Consensus       346 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d  425 (438)
                      ........         .....+.+.+.....++.         ++++..++..+...+..|..   ....+...++.+|
T Consensus       160 ~~~~~~~~---------~~~~~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~r~~---~~~~~~~~~~~~~  218 (494)
T COG0464         160 QIHTRLMF---------LGPPGTGKTLAARTVGKS---------GADLGALAKEAALRELRRAI---DLVGEYIGVTEDD  218 (494)
T ss_pred             HHHHhcCC---------CcccccHHHHHHhcCCcc---------HHHHHHHHHHHHHHHHHhhh---ccCcccccccHHH
Confidence            87765532         222344455555554443         67777888777777766642   1123456788999


Q ss_pred             HHHHHHHHHh
Q 013706          426 LEAGLKLLLR  435 (438)
Q Consensus       426 ~~~a~~~~~~  435 (438)
                      +.++++.+.|
T Consensus       219 ~~~~l~~~~~  228 (494)
T COG0464         219 FEEALKKVLP  228 (494)
T ss_pred             HHHHHHhcCc
Confidence            9999998766

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=99.40  E-value=6e-13  Score=134.61  Aligned_cols=204  Identities=18%  Similarity=0.161  Sum_probs=126.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccch--HHH--------HHHHHHccCcEEEE
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG--PKT--------RRRIKEAEGGILFV  268 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~--------~~~~~~a~~~il~i  268 (438)
                      -.|+||.|+||||||++|+++++.+..     ..+|+.+.........+|...  ..+        ...+.+|.+|||||
T Consensus        16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-----~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~l   90 (589)
T TIGR02031        16 LGGVAIRARAGTGKTALARALAEILPP-----IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYV   90 (589)
T ss_pred             cceEEEEcCCCcHHHHHHHHHHHhCCc-----CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEec
Confidence            568999999999999999999997643     126777765433344455421  000        12455678899999


Q ss_pred             eCcccccCCCCCCCchhHHHHHHHHHhhccCCC---------------EEEEEecCChhHHHHhhhCcCccCCCCcceeC
Q 013706          269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF  333 (438)
Q Consensus       269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~  333 (438)
                      ||++.+.+.           +++.|++.|+++.               +.||++.++.....  ...++|.+||+.++.+
T Consensus        91 DEi~rl~~~-----------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g--~L~~~LldRf~l~v~~  157 (589)
T TIGR02031        91 DMANLLDDG-----------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG--GLPDHLLDRLALHVSL  157 (589)
T ss_pred             cchhhCCHH-----------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC--CCCHHHHHhccCeeec
Confidence            999999874           4489999997643               56776655543111  2267899999988877


Q ss_pred             CCC-CHHHHHHHHHHHHhccccc-----------cc-cccccccccccHHHHHHHHHHHhhHhhhccccc---cchHHHH
Q 013706          334 NDF-NSEELAKILHIKMNNQTED-----------SL-LYGFKLHSSCSMDAIAALIEKETTEKQRREMNG---GLVDPML  397 (438)
Q Consensus       334 ~~~-~~~e~~~il~~~l~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~---~~l~~~~  397 (438)
                      ..+ +.+++.+|+++++......           +. ....--...++++.+..++..+.      ..+.   |.-..++
T Consensus       158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~------~~gv~s~Ra~i~~~  231 (589)
T TIGR02031       158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAA------SLGISGHRADLFAV  231 (589)
T ss_pred             CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHH------HcCCCCccHHHHHH
Confidence            654 5677899998866321100           00 00111123456666666666554      2222   3333333


Q ss_pred             HHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          398 VNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       398 ~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      .-|.-.|+.         .+...|+.+|+..|+..+.+
T Consensus       232 r~ArA~Aal---------~gr~~V~~~Dv~~a~~lvl~  260 (589)
T TIGR02031       232 RAAKAHAAL---------HGRTEVTEEDLKLAVELVLL  260 (589)
T ss_pred             HHHHHHHHH---------hCCCCCCHHHHHHHHHHHhh
Confidence            333333322         24568999999999887754

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.39  E-value=5.1e-12  Score=120.25  Aligned_cols=159  Identities=16%  Similarity=0.183  Sum_probs=101.8

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------  232 (438)
                      ..+++|+|++.+++.+.+.+..               .+-+..+||+||+|+||+++|.++|+.+.........      
T Consensus        16 ~~~~~iiGq~~~~~~L~~~~~~---------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~   80 (365)
T PRK07471         16 RETTALFGHAAAEAALLDAYRS---------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP   80 (365)
T ss_pred             CchhhccChHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence            4688999999999999876431               1233448999999999999999999998643211100      


Q ss_pred             ---------------------CEEEeecc--cccccccc-cchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCC
Q 013706          233 ---------------------RVTEVQRT--DLVGEFVG-HTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKAD  281 (438)
Q Consensus       233 ---------------------~~~~~~~~--~~~~~~~g-~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~  281 (438)
                                           .++.+.+.  +-.++.-. -.-..++.+.+..       ...|++|||+|.+..     
T Consensus        81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-----  155 (365)
T PRK07471         81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-----  155 (365)
T ss_pred             ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-----
Confidence                                 11111110  00000000 0112344444332       236999999999976     


Q ss_pred             CchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706          282 DKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  349 (438)
Q Consensus       282 ~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l  349 (438)
                            ...|.||..+++  +..++|++++...  .+   .|.+++|+ ..+.|++|+.++..+++....
T Consensus       156 ------~aanaLLK~LEepp~~~~~IL~t~~~~--~l---lpti~SRc-~~i~l~~l~~~~i~~~L~~~~  213 (365)
T PRK07471        156 ------NAANALLKVLEEPPARSLFLLVSHAPA--RL---LPTIRSRC-RKLRLRPLAPEDVIDALAAAG  213 (365)
T ss_pred             ------HHHHHHHHHHhcCCCCeEEEEEECCch--hc---hHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence                  445899999987  3444444433322  12   57788897 899999999999999988754

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.39  E-value=2.5e-12  Score=114.21  Aligned_cols=177  Identities=14%  Similarity=0.162  Sum_probs=109.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccch-HHHHHHHHHc-cCcEEEEeCcccccC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-PKTRRRIKEA-EGGILFVDEAYRLIP  276 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a-~~~il~iDEid~l~~  276 (438)
                      ...+.||||+|+|||.|..++++++....  ....++.+++.++...+..... ..+....+.- ..-+|+||+++.+..
T Consensus        34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~--~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~  111 (219)
T PF00308_consen   34 YNPLFLYGPSGLGKTHLLQAIANEAQKQH--PGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG  111 (219)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHHC--TTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhcc--ccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC
Confidence            34589999999999999999999875422  1235677777776554332111 1222333333 347999999999875


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC-hhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccc
Q 013706          277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~-~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      +.     .........+-...+.++.+|+.+... ..+..   ..|.|.+||  ...+.+.+|+.+++.+|+++......
T Consensus       112 ~~-----~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~---~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~  183 (219)
T PF00308_consen  112 KQ-----RTQEELFHLFNRLIESGKQLILTSDRPPSELSG---LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG  183 (219)
T ss_dssp             HH-----HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT---S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred             ch-----HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc---cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence            31     111222233333334566555555433 22222   278889999  67999999999999999999988753


Q ss_pred             cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                                 ..++++++..+++..       ..+.|.|..++++..-.
T Consensus       184 -----------~~l~~~v~~~l~~~~-------~~~~r~L~~~l~~l~~~  215 (219)
T PF00308_consen  184 -----------IELPEEVIEYLARRF-------RRDVRELEGALNRLDAY  215 (219)
T ss_dssp             -------------S-HHHHHHHHHHT-------TSSHHHHHHHHHHHHHH
T ss_pred             -----------CCCcHHHHHHHHHhh-------cCCHHHHHHHHHHHHHH
Confidence                       336778888888875       57788888887765543

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.39  E-value=6.2e-12  Score=110.00  Aligned_cols=185  Identities=19%  Similarity=0.260  Sum_probs=120.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc---------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------  229 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~---------  229 (438)
                      ..++.+.+.++....++...                ....-+|++||||+|+||-|.+.++-++++..|+-         
T Consensus        10 ksl~~l~~~~e~~~~Lksl~----------------~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~   73 (351)
T KOG2035|consen   10 KSLDELIYHEELANLLKSLS----------------STGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF   73 (351)
T ss_pred             chhhhcccHHHHHHHHHHhc----------------ccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence            35666777777777777651                12345899999999999999999999998654431         


Q ss_pred             -------------CCCCEEEeecccccccccccchH-HHHHHHHHc-----------c-CcEEEEeCcccccCCCCCCCc
Q 013706          230 -------------PTDRVTEVQRTDLVGEFVGHTGP-KTRRRIKEA-----------E-GGILFVDEAYRLIPMQKADDK  283 (438)
Q Consensus       230 -------------~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~a-----------~-~~il~iDEid~l~~~~~~~~~  283 (438)
                                   .+...+++++++     .|.-.. -+.+++++.           + -.+++|-|+|.|..+.|    
T Consensus        74 ~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ----  144 (351)
T KOG2035|consen   74 TTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ----  144 (351)
T ss_pred             ecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH----
Confidence                         111233333333     232221 233333321           1 17999999999987555    


Q ss_pred             hhHHHHHHHHHhhccC---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccc
Q 013706          284 DYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYG  360 (438)
Q Consensus       284 ~~~~~~~~~ll~~~~~---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~  360 (438)
                             .+|-+-|+.   ..-+++.++...++      -|++++|+ ..|++|.|+.+|+..++...++++.       
T Consensus       145 -------~aLRRTMEkYs~~~RlIl~cns~Sri------IepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~-------  203 (351)
T KOG2035|consen  145 -------HALRRTMEKYSSNCRLILVCNSTSRI------IEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEG-------  203 (351)
T ss_pred             -------HHHHHHHHHHhcCceEEEEecCcccc------hhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhc-------
Confidence                   566666654   44455556555554      57789998 8999999999999999999998863       


Q ss_pred             ccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHH
Q 013706          361 FKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA  400 (438)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a  400 (438)
                      +.    +..+.+..+++..       .+|.|-..-++|.+
T Consensus       204 l~----lp~~~l~rIa~kS-------~~nLRrAllmlE~~  232 (351)
T KOG2035|consen  204 LQ----LPKELLKRIAEKS-------NRNLRRALLMLEAV  232 (351)
T ss_pred             cc----CcHHHHHHHHHHh-------cccHHHHHHHHHHH
Confidence            33    3446666666655       45554444444433

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=1.3e-12  Score=113.91  Aligned_cols=123  Identities=21%  Similarity=0.213  Sum_probs=109.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccc-ccCCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA-KANNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A   81 (438)
                      ....||..+...|..+-...||+    .--++|..|..|.|+|..|+..|+.+.+++|++.|+|+|. ++..+.||||+|
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs----~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLS----TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHH----HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHH
Confidence            35679999999999999999998    4556999999999999999999999999999999999997 578899999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                      +    ..|+.+++++|++.|+.+..+|.-|+|+-.++|..+ +.+++..+..+
T Consensus        87 A----LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG-~H~CV~iINN~  134 (396)
T KOG1710|consen   87 A----LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVG-HHECVAIINNH  134 (396)
T ss_pred             H----HcCCchHHHHHHhccCccccccchhhhHHHHHHHhc-chHHHHHHhcc
Confidence            9    899999999999999999999999999997777765 55677766544

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.38  E-value=8.3e-12  Score=114.90  Aligned_cols=94  Identities=20%  Similarity=0.260  Sum_probs=58.1

Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChh-----HHH--HhhhCcCccCCCCcceeCC
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEP-----MKR--VIASNEGFCRRVTKFFHFN  334 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~-----~~~--~~~~~p~l~~R~~~~i~~~  334 (438)
                      +|||||||+|.|--           +..+.|-+.|+. -.-++|+|||+-.     .+.  ..-.+..|++|+ .+|...
T Consensus       279 pGVLFIDEvHmLDi-----------EcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII~t~  346 (398)
T PF06068_consen  279 PGVLFIDEVHMLDI-----------ECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LIIRTK  346 (398)
T ss_dssp             E-EEEEESGGGSBH-----------HHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEEEE-
T ss_pred             cceEEecchhhccH-----------HHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEEECC
Confidence            39999999999864           667888888887 2344555543111     110  000124688898 899999


Q ss_pred             CCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHH
Q 013706          335 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE  379 (438)
Q Consensus       335 ~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (438)
                      +|+.+|..+|++..++.+.           ..++++++..+..-.
T Consensus       347 py~~~ei~~Il~iR~~~E~-----------v~i~~~al~~L~~ig  380 (398)
T PF06068_consen  347 PYSEEEIKQILKIRAKEED-----------VEISEDALDLLTKIG  380 (398)
T ss_dssp             ---HHHHHHHHHHHHHHCT-------------B-HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhhhhhc-----------CcCCHHHHHHHHHHh
Confidence            9999999999999998764           456778888777643

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR00602 rad24 checkpoint protein rad24

Probab=99.38  E-value=4.8e-12  Score=127.30  Aligned_cols=212  Identities=13%  Similarity=0.103  Sum_probs=123.8

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++++|++...+.++.++....           ....+..-++|+||||||||++++++|+.+.........+.....
T Consensus        81 ~~ldel~~~~~ki~~l~~~l~~~~-----------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~  149 (637)
T TIGR00602        81 ETQHELAVHKKKIEEVETWLKAQV-----------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDF  149 (637)
T ss_pred             CCHHHhcCcHHHHHHHHHHHHhcc-----------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcc
Confidence            357899999998888887755432           111122348899999999999999999987542111011110000


Q ss_pred             ccc------ccccccc---cchHHHHHHHHHc-------------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh-
Q 013706          239 RTD------LVGEFVG---HTGPKTRRRIKEA-------------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS-  295 (438)
Q Consensus       239 ~~~------~~~~~~g---~~~~~~~~~~~~a-------------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~-  295 (438)
                      .++      .....++   .......+++..+             ...||||||++.+.....        ..+..++. 
T Consensus       150 ~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~--------~~lq~lLr~  221 (637)
T TIGR00602       150 QKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT--------RALHEILRW  221 (637)
T ss_pred             cccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH--------HHHHHHHHH
Confidence            000      0000011   1122233333332             236999999998764322        34555555 


Q ss_pred             -hccCCCEEEEEecCChhH------HHHhh----hCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc
Q 013706          296 -VMDGGKVVVIFAGYSEPM------KRVIA----SNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK  362 (438)
Q Consensus       296 -~~~~~~v~vi~~~~~~~~------~~~~~----~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~  362 (438)
                       ..+.+.+.+|++++.++.      +..+.    ..|++++  |. .+|.|++++..++...|++.+..+...     ..
T Consensus       222 ~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~-----~~  295 (637)
T TIGR00602       222 KYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK-----NG  295 (637)
T ss_pred             HhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc-----cc
Confidence             445666767776654332      11111    1367775  44 689999999999999999988875321     00


Q ss_pred             ccccc-cHHHHHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706          363 LHSSC-SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  402 (438)
Q Consensus       363 ~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~  402 (438)
                      -...+ +.+++..++...       .|++|...+.++-++.
T Consensus       296 ~~~~~p~~~~l~~I~~~s-------~GDiRsAIn~LQf~~~  329 (637)
T TIGR00602       296 EKIKVPKKTSVELLCQGC-------SGDIRSAINSLQFSSS  329 (637)
T ss_pred             cccccCCHHHHHHHHHhC-------CChHHHHHHHHHHHHh
Confidence            01111 457777777744       6778888888887643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.38  E-value=9e-13  Score=128.92  Aligned_cols=130  Identities=31%  Similarity=0.285  Sum_probs=111.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.+|||+|++.|+.++|+.++.    .+..+|..+..|.||||.|++.||.+++.+|+.+|+|+-..|+.+.|+|-.||
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~----q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~  156 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLL----QTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLAS  156 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHh----cccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHH
Confidence            47899999999999999999998    45789999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCC--------cccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADC--------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~--------~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                          ..|..+++.+|+......        ..++..+-+|+ |++...++.++.+.|+..|.+.+..
T Consensus       157 ----qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~pl-Hlaakngh~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  157 ----RFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPL-HLAAKNGHVECMQALLEAGFDINYT  218 (854)
T ss_pred             ----HhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCc-chhhhcchHHHHHHHHhcCCCcccc
Confidence                678889998888652221        23456788888 7777788999999999888765543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.37  E-value=1.2e-12  Score=88.81  Aligned_cols=54  Identities=50%  Similarity=0.732  Sum_probs=46.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHH
Q 013706           41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL   98 (438)
Q Consensus        41 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll   98 (438)
                      |+||||+|+..|+.+++++|++.|+++|.+|.+|+||||+|+    ..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~----~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAA----KNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHH----HTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HccCHHHHHHHC
Confidence            789999999999999999999999999999999999999999    889999999986

...

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.37  E-value=1.3e-11  Score=115.30  Aligned_cols=159  Identities=18%  Similarity=0.203  Sum_probs=104.3

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC-----------
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI-----------  228 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~-----------  228 (438)
                      .|++++|++.+++.+.+.+..               .+-+..+||+||+|+||+++|+++|+.+.....           
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~---------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~   66 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQ---------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEE   66 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccccc
Confidence            478999999999999987431               124578999999999999999999998864321           


Q ss_pred             cCCCCEEEeeccccc-cc--------ccc-------c-chHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCch
Q 013706          229 LPTDRVTEVQRTDLV-GE--------FVG-------H-TGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKD  284 (438)
Q Consensus       229 ~~~~~~~~~~~~~~~-~~--------~~g-------~-~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~  284 (438)
                      .....++.+.+.... ++        ..|       . .-..++++.+..       ...|++||++|.|...       
T Consensus        67 ~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~-------  139 (314)
T PRK07399         67 GNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA-------  139 (314)
T ss_pred             CCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-------
Confidence            000111222221000 10        011       0 012344444332       3489999999999763       


Q ss_pred             hHHHHHHHHHhhccC-CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHh
Q 013706          285 YGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN  350 (438)
Q Consensus       285 ~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~  350 (438)
                          +.|.||..|++ .+.++|+.++..  +.+   -|++++|+ ..+.|++++.++..+++.....
T Consensus       140 ----aaNaLLK~LEEPp~~~fILi~~~~--~~L---l~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~  196 (314)
T PRK07399        140 ----AANALLKTLEEPGNGTLILIAPSP--ESL---LPTIVSRC-QIIPFYRLSDEQLEQVLKRLGD  196 (314)
T ss_pred             ----HHHHHHHHHhCCCCCeEEEEECCh--HhC---cHHHHhhc-eEEecCCCCHHHHHHHHHHhhc
Confidence                44899999986 233444443321  333   78899998 9999999999999999987643

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.37  E-value=1.3e-11  Score=116.29  Aligned_cols=154  Identities=14%  Similarity=0.252  Sum_probs=102.3

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc-CCCCEEEee
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL-PTDRVTEVQ  238 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~  238 (438)
                      .|++++|++.+++.+.+.+..               ...+..+||+||+|+|||++|+.+|+.+...... ....+..+.
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~~---------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~   66 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSIIK---------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK   66 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHHc---------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence            488999999999998876431               1233456899999999999999999987532211 111232332


Q ss_pred             cccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY  309 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~  309 (438)
                      +.  .+..+  .-..++.+.+..       ...|++||++|.+...           +.|.||..+++  ...++|++++
T Consensus        67 ~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-----------a~naLLK~LEepp~~t~~il~~~  131 (313)
T PRK05564         67 PI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-----------AQNAFLKTIEEPPKGVFIILLCE  131 (313)
T ss_pred             cc--cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH-----------HHHHHHHHhcCCCCCeEEEEEeC
Confidence            21  01111  223455555432       3379999999999763           44899999997  3344444432


Q ss_pred             ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706          310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  349 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l  349 (438)
                      . + +.+   .|++++|+ ..++|++|+.++....+....
T Consensus       132 ~-~-~~l---l~TI~SRc-~~~~~~~~~~~~~~~~l~~~~  165 (313)
T PRK05564        132 N-L-EQI---LDTIKSRC-QIYKLNRLSKEEIEKFISYKY  165 (313)
T ss_pred             C-h-HhC---cHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence            2 2 333   78899998 799999999999888776543

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=99.37  E-value=6.2e-13  Score=109.58  Aligned_cols=130  Identities=21%  Similarity=0.321  Sum_probs=81.5

Q ss_pred             ChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706          166 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE  245 (438)
Q Consensus       166 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                      |.....+++++.+..+              +....+|+|+|+|||||+++|++|+...    .....+|+.+++..+.  
T Consensus         2 G~S~~~~~l~~~l~~~--------------a~~~~pvli~GE~GtGK~~~A~~lh~~~----~~~~~~~~~~~~~~~~--   61 (138)
T PF14532_consen    2 GKSPAMRRLRRQLERL--------------AKSSSPVLITGEPGTGKSLLARALHRYS----GRANGPFIVIDCASLP--   61 (138)
T ss_dssp             -SCHHHHHHHHHHHHH--------------HCSSS-EEEECCTTSSHHHHHHCCHHTT----TTCCS-CCCCCHHCTC--
T ss_pred             CCCHHHHHHHHHHHHH--------------hCCCCcEEEEcCCCCCHHHHHHHHHhhc----CccCCCeEEechhhCc--
Confidence            4555555555554444              2466789999999999999999999843    3344567766666543  


Q ss_pred             ccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc---CCCEEEEEecCChhHHHHh--hhC
Q 013706          246 FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD---GGKVVVIFAGYSEPMKRVI--ASN  320 (438)
Q Consensus       246 ~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~---~~~v~vi~~~~~~~~~~~~--~~~  320 (438)
                               .+.++.+.+++|||+|+|.+.+..|           ..|+..++   ..++.+|+++..+....+-  ..+
T Consensus        62 ---------~~~l~~a~~gtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~  121 (138)
T PF14532_consen   62 ---------AELLEQAKGGTLYLKNIDRLSPEAQ-----------RRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFS  121 (138)
T ss_dssp             ---------HHHHHHCTTSEEEEECGCCS-HHHH-----------HHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHH
T ss_pred             ---------HHHHHHcCCCEEEECChHHCCHHHH-----------HHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchh
Confidence                     4577889999999999999987554           45555543   4567777776544432111  113


Q ss_pred             cCccCCC-CcceeCCC
Q 013706          321 EGFCRRV-TKFFHFND  335 (438)
Q Consensus       321 p~l~~R~-~~~i~~~~  335 (438)
                      +.|..|| ...|.+|+
T Consensus       122 ~~L~~~l~~~~i~lPp  137 (138)
T PF14532_consen  122 PDLYYRLSQLEIHLPP  137 (138)
T ss_dssp             HHHHHHCSTCEEEE--
T ss_pred             HHHHHHhCCCEEeCCC
Confidence            5556666 45666665

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=99.36  E-value=3e-11  Score=109.24  Aligned_cols=213  Identities=17%  Similarity=0.177  Sum_probs=138.4

Q ss_pred             hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC--CcCCCCEEEeecc
Q 013706          163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDRVTEVQRT  240 (438)
Q Consensus       163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~  240 (438)
                      .-+|.+..++.+..+..-+..|          ....++++||+|++|.|||++++.+.+.-....  -....|++.+...
T Consensus        35 rWIgY~~A~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P  104 (302)
T PF05621_consen   35 RWIGYPRAKEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP  104 (302)
T ss_pred             CeecCHHHHHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence            3478888877777664434332          234678999999999999999999987542111  0112356666554


Q ss_pred             ccc------cc---ccc----------cchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC
Q 013706          241 DLV------GE---FVG----------HTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK  301 (438)
Q Consensus       241 ~~~------~~---~~g----------~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~  301 (438)
                      .-.      ..   .+|          +.+..+..+|+...--+|+|||+|.+....    ....+.++|.|-..-.+-+
T Consensus       105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs----~~~qr~~Ln~LK~L~NeL~  180 (302)
T PF05621_consen  105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS----YRKQREFLNALKFLGNELQ  180 (302)
T ss_pred             CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc----HHHHHHHHHHHHHHhhccC
Confidence            211      11   011          112223355666677999999999987532    1223456666666656677


Q ss_pred             EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCH-HHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706          302 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  380 (438)
Q Consensus       302 v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~-~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (438)
                      +.+|+.++.+... .+..||-+.+|| ..+.+|.... ++...++..+-....       +.....+....+...+...+
T Consensus       181 ipiV~vGt~~A~~-al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LP-------Lr~~S~l~~~~la~~i~~~s  251 (302)
T PF05621_consen  181 IPIVGVGTREAYR-ALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALP-------LRKPSNLASPELARRIHERS  251 (302)
T ss_pred             CCeEEeccHHHHH-HhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCC-------CCCCCCCCCHHHHHHHHHHc
Confidence            8888888777766 456789999999 6777777765 566666666555443       33334456666766666555


Q ss_pred             hHhhhccccccchHHHHHHHHHHh
Q 013706          381 TEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       381 ~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                            .|+..++..++..|...|
T Consensus       252 ------~G~iG~l~~ll~~aA~~A  269 (302)
T PF05621_consen  252 ------EGLIGELSRLLNAAAIAA  269 (302)
T ss_pred             ------CCchHHHHHHHHHHHHHH
Confidence                  788888999999888877

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.36  E-value=4.8e-14  Score=110.49  Aligned_cols=109  Identities=25%  Similarity=0.326  Sum_probs=58.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc-c-ccccccccchHHH-HHHHHHcc----CcEEEEeCccc
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-D-LVGEFVGHTGPKT-RRRIKEAE----GGILFVDEAYR  273 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~-~~~~~~g~~~~~~-~~~~~~a~----~~il~iDEid~  273 (438)
                      |+||.|+||+|||++|+++|+.++.       .|..++.. + +.+...|..--.. ...|+-..    ..|+|+|||.+
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~-------~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNr   73 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGL-------SFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINR   73 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT---------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGG
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCC-------ceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccccc
Confidence            7899999999999999999998876       55555443 2 2222223210000 01111111    27999999999


Q ss_pred             ccCCCCCCCchhHHHHHHHHHhhccCCC-------------EEEEEecCChhHHHHhhhCcCccCCC
Q 013706          274 LIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRVIASNEGFCRRV  327 (438)
Q Consensus       274 l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------v~vi~~~~~~~~~~~~~~~p~l~~R~  327 (438)
                      ..++.|           +.||+.|++++             ++||++.|+...........++++||
T Consensus        74 appktQ-----------sAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF  129 (131)
T PF07726_consen   74 APPKTQ-----------SALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF  129 (131)
T ss_dssp             S-HHHH-----------HHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred             CCHHHH-----------HHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence            988544           99999998643             46677766544444445567888887

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.34  E-value=3.3e-12  Score=111.27  Aligned_cols=129  Identities=16%  Similarity=0.237  Sum_probs=83.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC-----------------CEEEeecccccccccccchHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKE  260 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~  260 (438)
                      .+..+||+||||+|||++|+.+++.+.........                 .+..+...   +...  ....++.+++.
T Consensus        13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~--~~~~i~~i~~~   87 (188)
T TIGR00678        13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSI--KVDQVRELVEF   87 (188)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcC--CHHHHHHHHHH
Confidence            34569999999999999999999988542110000                 11111111   0011  12344444444


Q ss_pred             c-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcce
Q 013706          261 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF  331 (438)
Q Consensus       261 a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i  331 (438)
                      +       ...|+||||+|.+...           .++.|+..|++  ...++|++++..  ..+   .|++++|+ ..+
T Consensus        88 ~~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~~~~~il~~~~~--~~l---~~~i~sr~-~~~  150 (188)
T TIGR00678        88 LSRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPPNTLFILITPSP--EKL---LPTIRSRC-QVL  150 (188)
T ss_pred             HccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCCCeEEEEEECCh--HhC---hHHHHhhc-EEe
Confidence            3       2379999999999763           34889999886  335555554322  333   78899998 799


Q ss_pred             eCCCCCHHHHHHHHHHH
Q 013706          332 HFNDFNSEELAKILHIK  348 (438)
Q Consensus       332 ~~~~~~~~e~~~il~~~  348 (438)
                      .|++|+.+++.+++...
T Consensus       151 ~~~~~~~~~~~~~l~~~  167 (188)
T TIGR00678       151 PFPPLSEEALLQWLIRQ  167 (188)
T ss_pred             eCCCCCHHHHHHHHHHc
Confidence            99999999998888764

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK04132 replication factor C small subunit; Provisional

Probab=99.34  E-value=7.9e-12  Score=128.91  Aligned_cols=160  Identities=22%  Similarity=0.205  Sum_probs=118.1

Q ss_pred             CceEEec--CCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc---------cCcEEEE
Q 013706          200 PHMAFLG--NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---------EGGILFV  268 (438)
Q Consensus       200 ~~~ll~G--ppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---------~~~il~i  268 (438)
                      -+-+..|  |++.||||+|+++|++++..  .....++++++++..+.      ..++.+++.+         +..|+||
T Consensus       565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~--~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII  636 (846)
T PRK04132        565 YHNFIGGNLPTVLHNTTAALALARELFGE--NWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL  636 (846)
T ss_pred             hhhhhcCCCCCcccHHHHHHHHHHhhhcc--cccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence            3456679  99999999999999988532  12347999999985321      2344444321         1259999


Q ss_pred             eCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHH
Q 013706          269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH  346 (438)
Q Consensus       269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~  346 (438)
                      ||+|.|....|           +.|+..|+.  +.+.+|++++..  ..+   .|++++|+ ..+.|++|+.+++...++
T Consensus       637 DEaD~Lt~~AQ-----------nALLk~lEep~~~~~FILi~N~~--~kI---i~tIrSRC-~~i~F~~ls~~~i~~~L~  699 (846)
T PRK04132        637 DEADALTQDAQ-----------QALRRTMEMFSSNVRFILSCNYS--SKI---IEPIQSRC-AIFRFRPLRDEDIAKRLR  699 (846)
T ss_pred             ECcccCCHHHH-----------HHHHHHhhCCCCCeEEEEEeCCh--hhC---chHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence            99999987444           999999996  566666664432  333   68899997 999999999999999999


Q ss_pred             HHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706          347 IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE  402 (438)
Q Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~  402 (438)
                      ..+.++.           ..++++++..++...       .|+.|...++++.+..
T Consensus       700 ~I~~~Eg-----------i~i~~e~L~~Ia~~s-------~GDlR~AIn~Lq~~~~  737 (846)
T PRK04132        700 YIAENEG-----------LELTEEGLQAILYIA-------EGDMRRAINILQAAAA  737 (846)
T ss_pred             HHHHhcC-----------CCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence            8887642           335677888888765       6778888899887654

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.33  E-value=1.4e-10  Score=99.79  Aligned_cols=200  Identities=20%  Similarity=0.281  Sum_probs=129.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+.+++|.+..++.+.+-....            ....+..||||+|..||||++++|++..++...+.    .+++++
T Consensus        57 i~L~~l~Gvd~qk~~L~~NT~~F------------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl----rLVEV~  120 (287)
T COG2607          57 IDLADLVGVDRQKEALVRNTEQF------------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL----RLVEVD  120 (287)
T ss_pred             cCHHHHhCchHHHHHHHHHHHHH------------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC----eEEEEc
Confidence            46889999999999888754433            12346778999999999999999999999987665    489999


Q ss_pred             cccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCEEEEEecCCh
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYSE  311 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v~vi~~~~~~  311 (438)
                      ..++..      -..+-+.++.. ..-|||.|+.- +         +.+...-..|...+|+      .+|++-+++|+.
T Consensus       121 k~dl~~------Lp~l~~~Lr~~~~kFIlFcDDLS-F---------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR  184 (287)
T COG2607         121 KEDLAT------LPDLVELLRARPEKFILFCDDLS-F---------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRR  184 (287)
T ss_pred             HHHHhh------HHHHHHHHhcCCceEEEEecCCC-C---------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence            887642      11222223322 34799999861 1         1112333667777776      346666665543


Q ss_pred             hHH-HHhhhC----------------cCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHH
Q 013706          312 PMK-RVIASN----------------EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA  374 (438)
Q Consensus       312 ~~~-~~~~~~----------------p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  374 (438)
                      ... ....-+                -+|.+||...+.|++++.++-..|+..+.++.       ++.+    +++.+..
T Consensus       185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~-------~l~~----~~e~l~~  253 (287)
T COG2607         185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF-------GLDI----SDEELHA  253 (287)
T ss_pred             ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHc-------CCCC----CHHHHHH
Confidence            332 111111                14667999999999999999999999999874       3333    3344444


Q ss_pred             HHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          375 LIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       375 ~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      .+-.+  +..+..-+||-..+.++....+
T Consensus       254 eAl~W--At~rg~RSGR~A~QF~~~~~g~  280 (287)
T COG2607         254 EALQW--ATTRGGRSGRVAWQFIRDLAGR  280 (287)
T ss_pred             HHHHH--HHhcCCCccHhHHHHHHHHHhh
Confidence            33332  2223355677777776654433

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.33  E-value=1.9e-12  Score=122.79  Aligned_cols=135  Identities=21%  Similarity=0.269  Sum_probs=89.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc--cccccccchHHHH----HHHHHcc-------Cc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL--VGEFVGHTGPKTR----RRIKEAE-------GG  264 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~----~~~~~a~-------~~  264 (438)
                      ...++||.||||||||++|+.+|+.++.       +|+.+++...  .+..+|...-...    ..+.--.       .+
T Consensus        42 ~~~~vll~G~PG~gKT~la~~lA~~l~~-------~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~  114 (329)
T COG0714          42 AGGHVLLEGPPGVGKTLLARALARALGL-------PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRV  114 (329)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHHhCC-------CeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccce
Confidence            4679999999999999999999999875       7777777642  2333443221111    1111111       14


Q ss_pred             EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------------CEEEEEecCChhHHHHhhhCcCccCCCCcc
Q 013706          265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKF  330 (438)
Q Consensus       265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~  330 (438)
                      |+|+|||++..+.           +.+.|++.|++.              .+++|+++|+-........++++++||...
T Consensus       115 ill~DEInra~p~-----------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~  183 (329)
T COG0714         115 ILLLDEINRAPPE-----------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLR  183 (329)
T ss_pred             EEEEeccccCCHH-----------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEE
Confidence            9999999999874           449999999862              235555545433333333378899999999


Q ss_pred             eeCCCCCHHHHHHHHHHHHh
Q 013706          331 FHFNDFNSEELAKILHIKMN  350 (438)
Q Consensus       331 i~~~~~~~~e~~~il~~~l~  350 (438)
                      +.++.|..++...++.....
T Consensus       184 ~~v~yp~~~~e~~~i~~~~~  203 (329)
T COG0714         184 IYVDYPDSEEEERIILARVG  203 (329)
T ss_pred             EecCCCCchHHHHHHHHhCc
Confidence            99999965554454444333

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.33  E-value=5e-11  Score=113.99  Aligned_cols=155  Identities=19%  Similarity=0.262  Sum_probs=89.8

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..++++.+.+...+.+...+.                  ..++++|+||||||||++|+.+|..+..........++.++
T Consensus       172 ~~l~d~~i~e~~le~l~~~L~------------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFH  233 (459)
T PRK11331        172 DALNDLFIPETTIETILKRLT------------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH  233 (459)
T ss_pred             HHhhcccCCHHHHHHHHHHHh------------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeec
Confidence            346777887776666654321                  35799999999999999999999987432111122234444


Q ss_pred             cc----cccccc----cccc--hHHHHHHHHHc-----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----
Q 013706          239 RT----DLVGEF----VGHT--GPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----  299 (438)
Q Consensus       239 ~~----~~~~~~----~g~~--~~~~~~~~~~a-----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----  299 (438)
                      .+    +++..+    +|..  .....+++..|     .+.+||||||++...++          +...+++.|+.    
T Consensus       234 psySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~rg  303 (459)
T PRK11331        234 QSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKRG  303 (459)
T ss_pred             ccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhccccccc
Confidence            32    232221    2211  11222333333     35899999999876532          22333333321    


Q ss_pred             --------------------CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCC-CCHHHHHH
Q 013706          300 --------------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND-FNSEELAK  343 (438)
Q Consensus       300 --------------------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~-~~~~e~~~  343 (438)
                                          .++.+|+|.|+.+- .+...|+||+||| ..|++.+ ++.++...
T Consensus       304 ~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr-s~~~lD~AlrRRF-~fi~i~p~~~~~~~~~  366 (459)
T PRK11331        304 ENWSVPLTYSENDEERFYVPENVYIIGLMNTADR-SLAVVDYALRRRF-SFIDIEPGFDTPQFRN  366 (459)
T ss_pred             cccceeeeccccccccccCCCCeEEEEecCcccc-chhhccHHHHhhh-heEEecCCCChHHHHH
Confidence                                35788888765552 2223499999999 5566654 55544333

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.32  E-value=6.3e-11  Score=112.18  Aligned_cols=179  Identities=16%  Similarity=0.218  Sum_probs=124.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccC-cEEEEeCcccccC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG-GILFVDEAYRLIP  276 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-~il~iDEid~l~~  276 (438)
                      ....++||||+|.|||-|+.+++++....+.  +..++.++...+...++-..-.+-..-|++.-. -+++||+|+.+..
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~--~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g  189 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGP--NARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG  189 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHHHHHhhCC--CceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence            4567999999999999999999998865432  334666776666655543322222233333223 5999999999987


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCCCEEEEEecC-ChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccc
Q 013706          277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-SEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~-~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      +..     ...+..+.|-...+.++-+|+.+.. +..+..+   .|.|++||  ...+.+.+|+.+.+..|+........
T Consensus       190 k~~-----~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~---~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~  261 (408)
T COG0593         190 KER-----TQEEFFHTFNALLENGKQIVLTSDRPPKELNGL---EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG  261 (408)
T ss_pred             Chh-----HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc---cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence            532     1335667777777777644444432 3332233   68899999  77889999999999999999666542


Q ss_pred             cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                                 ..++++++..++...       ..|.|++...+++....+
T Consensus       262 -----------~~i~~ev~~~la~~~-------~~nvReLegaL~~l~~~a  294 (408)
T COG0593         262 -----------IEIPDEVLEFLAKRL-------DRNVRELEGALNRLDAFA  294 (408)
T ss_pred             -----------CCCCHHHHHHHHHHh-------hccHHHHHHHHHHHHHHH
Confidence                       456778888888876       577888888888777655

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=99.31  E-value=8e-12  Score=111.71  Aligned_cols=156  Identities=15%  Similarity=0.165  Sum_probs=103.7

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .++++++++++...+.++..                ...-+|.|||||||||||+...+.|..++.+ .-.+.-+.+++.
T Consensus        39 ~l~dv~~~~ei~st~~~~~~----------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~-~~~~~m~lelna  101 (360)
T KOG0990|consen   39 FLGIVIKQEPIWSTENRYSG----------------MPGLPHLLFYGPPGTGKTSTILANARDFYSP-HPTTSMLLELNA  101 (360)
T ss_pred             hhhhHhcCCchhhHHHHhcc----------------CCCCCcccccCCCCCCCCCchhhhhhhhcCC-CCchhHHHHhhc
Confidence            56777888888777777622                2345599999999999999999999988752 111112344444


Q ss_pred             ccccccccccchHHHHHHHHHc----------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC---CCEEEEE
Q 013706          240 TDLVGEFVGHTGPKTRRRIKEA----------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIF  306 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~a----------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~v~vi~  306 (438)
                      ++-.+-.+-   ......|..+          .-..+++||+|.+....|           |+|-+.++.   +.-+.+.
T Consensus       102 Sd~rgid~v---r~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-----------nALRRviek~t~n~rF~ii  167 (360)
T KOG0990|consen  102 SDDRGIDPV---RQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-----------NALRRVIEKYTANTRFATI  167 (360)
T ss_pred             cCccCCcch---HHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-----------HHHHHHHHHhccceEEEEe
Confidence            443222111   1111222222          236899999999987555           777777765   2233334


Q ss_pred             ecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccc
Q 013706          307 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       307 ~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      +++....      .|++++|| ..+.|.+.+..+..+.+.+.++.+.
T Consensus       168 ~n~~~ki------~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~  207 (360)
T KOG0990|consen  168 SNPPQKI------HPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ  207 (360)
T ss_pred             ccChhhc------Cchhhccc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence            4333332      89999999 8899999999999999999988764

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.29  E-value=9.3e-12  Score=103.74  Aligned_cols=124  Identities=23%  Similarity=0.248  Sum_probs=76.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHH------HHHHHHHccCcEEEEeCc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK------TRRRIKEAEGGILFVDEA  271 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~a~~~il~iDEi  271 (438)
                      ...+++++||||||||++++.+++.+..    ...+++.+++..............      .........+++|+|||+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~   93 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFR----PGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEI   93 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhc----CCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeCh
Confidence            4578999999999999999999998742    123677777766544332221111      111222335699999999


Q ss_pred             ccccCCCCCCCchhHHHHHHHHHhhcc----CCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCC
Q 013706          272 YRLIPMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND  335 (438)
Q Consensus       272 d~l~~~~~~~~~~~~~~~~~~ll~~~~----~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~  335 (438)
                      +.+.+.       ........+....+    ...+.+|++++......   .++.+.+||+..+.+++
T Consensus        94 ~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~---~~~~~~~r~~~~i~~~~  151 (151)
T cd00009          94 DSLSRG-------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGD---LDRALYDRLDIRIVIPL  151 (151)
T ss_pred             hhhhHH-------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCC---cChhHHhhhccEeecCC
Confidence            988331       11122222333322    25677888776655312   26778889988887763

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.29  E-value=8.7e-12  Score=117.86  Aligned_cols=155  Identities=16%  Similarity=0.218  Sum_probs=99.3

Q ss_pred             HHhhhcC-hHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          160 ELSNIVG-LHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       160 ~l~~i~G-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      .|+.++| ++.+++.+...+.                ....+| +||+||+|+|||++|+.+|+.+.........++-.+
T Consensus         3 ~~~~i~~~q~~~~~~L~~~~~----------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C   66 (329)
T PRK08058          3 TWEQLTALQPVVVKMLQNSIA----------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTC   66 (329)
T ss_pred             cHHHHHhhHHHHHHHHHHHHH----------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcC
Confidence            3677888 8888888887643                123344 699999999999999999998864321111111000


Q ss_pred             e---------cccccc-ccccc--chHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706          238 Q---------RTDLVG-EFVGH--TGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  298 (438)
Q Consensus       238 ~---------~~~~~~-~~~g~--~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  298 (438)
                      .         -.++.- ..-|.  .-..++.+.+..       ...|++|||+|.+..           .+.|.||..++
T Consensus        67 ~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK~LE  135 (329)
T PRK08058         67 TNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLKFLE  135 (329)
T ss_pred             HHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHHHhc
Confidence            0         001100 00011  112444444332       337999999999976           44599999999


Q ss_pred             C--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHH
Q 013706          299 G--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI  347 (438)
Q Consensus       299 ~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~  347 (438)
                      +  ..+++|++++..  ..+   .|++++|+ ..++|++|+.++..++++.
T Consensus       136 EPp~~~~~Il~t~~~--~~l---l~TIrSRc-~~i~~~~~~~~~~~~~L~~  180 (329)
T PRK08058        136 EPSGGTTAILLTENK--HQI---LPTILSRC-QVVEFRPLPPESLIQRLQE  180 (329)
T ss_pred             CCCCCceEEEEeCCh--HhC---cHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence            7  556666654422  233   68899998 9999999999998777753

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.29  E-value=1.5e-12  Score=107.71  Aligned_cols=108  Identities=28%  Similarity=0.417  Sum_probs=66.2

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc--ccccccchHH------HHHHHHH--ccCcEEEEeC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV--GEFVGHTGPK------TRRRIKE--AEGGILFVDE  270 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~------~~~~~~~--a~~~il~iDE  270 (438)
                      +|+|+||||||||++|+.+|+.+..       +++.++.+...  .+++|.-...      ....+..  .+++++||||
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~-------~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDE   73 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGR-------PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDE   73 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTC-------EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhc-------ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECC
Confidence            5899999999999999999998854       66666655321  1222221100      0000111  1679999999


Q ss_pred             cccccCCCCCCCchhHHHHHHHHHhhccCC---------------------CEEEEEecCChhHHHHhhhCcCccCCC
Q 013706          271 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------------KVVVIFAGYSEPMKRVIASNEGFCRRV  327 (438)
Q Consensus       271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------------~v~vi~~~~~~~~~~~~~~~p~l~~R~  327 (438)
                      ++...+           .++..|+..++++                     .+.+|++.++.. ...-..+++|++||
T Consensus        74 in~a~~-----------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~Rf  139 (139)
T PF07728_consen   74 INRAPP-----------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDRF  139 (139)
T ss_dssp             CGG--H-----------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT-
T ss_pred             cccCCH-----------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhhC
Confidence            988765           6667777777651                     167788877666 22223488999997

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.26  E-value=2.8e-10  Score=112.07  Aligned_cols=201  Identities=16%  Similarity=0.174  Sum_probs=124.8

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHH---H--------------hcCCCCCCCCC-CceEEecCCCCCHHHHHHHHH
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERR---K--------------ALGLKVGARRP-PHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~---~--------------~~~~~~~~~~~-~~~ll~GppGtGKT~la~~la  220 (438)
                      +.|.++.|-+.+.+.+..|++..-.--.+   .              ........+|+ +-+||+||||-||||||+.+|
T Consensus       268 k~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViA  347 (877)
T KOG1969|consen  268 KKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIA  347 (877)
T ss_pred             hHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHH
Confidence            46788888888877777766532111111   1              11111222333 346799999999999999999


Q ss_pred             HHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706          221 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI  293 (438)
Q Consensus       221 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l  293 (438)
                      +..+.       .++++++++-...-  ....++..++..       .++.-|+|||||--.+           .+++.+
T Consensus       348 kqaGY-------sVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~-----------~~Vdvi  407 (877)
T KOG1969|consen  348 KQAGY-------SVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR-----------AAVDVI  407 (877)
T ss_pred             HhcCc-------eEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCcH-----------HHHHHH
Confidence            99887       89999999753210  011122222211       2457899999985542           455666


Q ss_pred             HhhccC---------C--------------CEEEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHH
Q 013706          294 MSVMDG---------G--------------KVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIK  348 (438)
Q Consensus       294 l~~~~~---------~--------------~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~  348 (438)
                      +..+..         +              .--+||.. ++-+      .|+|+.  -|..+|.|.+|+..-+.+-|+..
T Consensus       408 lslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICIC-NdLY------aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~I  480 (877)
T KOG1969|consen  408 LSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICIC-NDLY------APALRPLRPFAEIIAFVPPSQSRLVERLNEI  480 (877)
T ss_pred             HHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEe-cCcc------chhhhhcccceEEEEecCCChhHHHHHHHHH
Confidence            666641         0              01233321 2222      566654  56899999999999888888888


Q ss_pred             HhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          349 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +.++.           ..++..++..+++.+       .++.|...|-++-...+.
T Consensus       481 C~rE~-----------mr~d~~aL~~L~el~-------~~DIRsCINtLQfLa~~~  518 (877)
T KOG1969|consen  481 CHREN-----------MRADSKALNALCELT-------QNDIRSCINTLQFLASNV  518 (877)
T ss_pred             Hhhhc-----------CCCCHHHHHHHHHHh-------cchHHHHHHHHHHHHHhc
Confidence            87763           346778899999877       345555556655544443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.26  E-value=2.8e-12  Score=87.44  Aligned_cols=54  Identities=44%  Similarity=0.640  Sum_probs=32.2

Q ss_pred             HHHCC-CCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccc
Q 013706           60 LLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH  117 (438)
Q Consensus        60 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~  117 (438)
                      |+++| ++++.+|..|.||||+||    ..|+.+++++|++.|++++.+|..|+||+++
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~----~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~   55 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAA----RYGHSEVVRLLLQNGADPNAKDKDGQTPLHY   55 (56)
T ss_dssp             -----T--TT---TTS--HHHHHH----HHT-HHHHHHHHHCT--TT---TTS--HHHH
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHH----HcCcHHHHHHHHHCcCCCCCCcCCCCCHHHh
Confidence            57778 899999999999999999    8899999999999999999999999999954

>smart00763 AAA_PrkA PrkA AAA domain

Probab=99.25  E-value=3.8e-10  Score=105.19  Aligned_cols=79  Identities=19%  Similarity=0.201  Sum_probs=57.5

Q ss_pred             cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-------------EEEEEecCChhHHHH--hhhCcCccCC
Q 013706          262 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRV--IASNEGFCRR  326 (438)
Q Consensus       262 ~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------v~vi~~~~~~~~~~~--~~~~p~l~~R  326 (438)
                      ..||+-|+|+.+...           +.++.||..++++.             .++|+++|+.++...  .....+|++|
T Consensus       236 NrGi~~f~Ei~K~~~-----------~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR  304 (361)
T smart00763      236 NRGILEFVEMFKADI-----------KFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDR  304 (361)
T ss_pred             cCceEEEeehhcCCH-----------HHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhc
Confidence            448888888887765           67799999998632             366777666665533  2446899999


Q ss_pred             CCcceeCCCCCH-HHHHHHHHHHHhcc
Q 013706          327 VTKFFHFNDFNS-EELAKILHIKMNNQ  352 (438)
Q Consensus       327 ~~~~i~~~~~~~-~e~~~il~~~l~~~  352 (438)
                      + ..+.+|.+.. ++-.+|.++.+...
T Consensus       305 ~-~~i~vpY~l~~~~E~~Iy~k~~~~s  330 (361)
T smart00763      305 I-IKVKVPYCLRVSEEAQIYEKLLRNS  330 (361)
T ss_pred             e-EEEeCCCcCCHHHHHHHHHHHhccC
Confidence            9 4888988864 66678888887753

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.24  E-value=9.1e-12  Score=123.46  Aligned_cols=127  Identities=29%  Similarity=0.311  Sum_probs=103.8

Q ss_pred             CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccc----cCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC---
Q 013706            3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQ----NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN---   72 (438)
Q Consensus         3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---   72 (438)
                      .|.|.||.|..+   ++-++++.|++.   -+.-+|..    ...|.||||+|+.+.+.++|++|++.|||+|++..   
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~---~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~F  218 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEI---FPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAF  218 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHH---hHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccc
Confidence            589999999974   466899999984   22223321    25799999999999999999999999999986431   


Q ss_pred             --------------------CCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHH
Q 013706           73 --------------------NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL  132 (438)
Q Consensus        73 --------------------~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~  132 (438)
                                          .|..||.+|+    .-++.+++++|+++|||++..|.+|+|.||. +.-.-..++-.+++
T Consensus       219 F~~~dqk~~rk~T~Y~G~~YfGEyPLSfAA----C~nq~eivrlLl~~gAd~~aqDS~GNTVLH~-lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  219 FCPDDQKASRKSTNYTGYFYFGEYPLSFAA----CTNQPEIVRLLLAHGADPNAQDSNGNTVLHM-LVIHFVTEMYDLAL  293 (782)
T ss_pred             cCcccccccccccCCcceeeeccCchHHHH----HcCCHHHHHHHHhcCCCCCccccCCChHHHH-HHHHHHHHHHHHHH
Confidence                                4789999999    6789999999999999999999999999944 44456677888888


Q ss_pred             hccch
Q 013706          133 WHSEE  137 (438)
Q Consensus       133 ~~~~~  137 (438)
                      ..++.
T Consensus       294 ~~ga~  298 (782)
T KOG3676|consen  294 ELGAN  298 (782)
T ss_pred             hcCCC
Confidence            77776

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=99.23  E-value=7.6e-10  Score=108.83  Aligned_cols=234  Identities=17%  Similarity=0.186  Sum_probs=155.2

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHH---HcCCcCCCCEEEee
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY---MVGILPTDRVTEVQ  238 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~---~~~~~~~~~~~~~~  238 (438)
                      +.+-+.+....+|..+++.....           .....-+.+.|-||||||.+++.+-+.|.   ..+-.....+++++
T Consensus       396 ~sLpcRe~E~~~I~~f~~~~i~~-----------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN  464 (767)
T KOG1514|consen  396 ESLPCRENEFSEIEDFLRSFISD-----------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN  464 (767)
T ss_pred             ccccchhHHHHHHHHHHHhhcCC-----------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc
Confidence            34556666667777665543211           01223577889999999999999988775   34455666889999


Q ss_pred             cccccc----------cccccch------HHHHHHHH----HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706          239 RTDLVG----------EFVGHTG------PKTRRRIK----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  298 (438)
Q Consensus       239 ~~~~~~----------~~~g~~~------~~~~~~~~----~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  298 (438)
                      +-.+.+          .+-|+..      ..+...|.    ....+||+|||.|.|....|        .++..|..+-.
T Consensus       465 gm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q--------dVlYn~fdWpt  536 (767)
T KOG1514|consen  465 GLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ--------DVLYNIFDWPT  536 (767)
T ss_pred             ceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH--------HHHHHHhcCCc
Confidence            876543          2344421      12233343    12348999999999998877        66666666653


Q ss_pred             --CCCEEEEE-ecCChhHHHHhhhCcCccCCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHH
Q 013706          299 --GGKVVVIF-AGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA  374 (438)
Q Consensus       299 --~~~v~vi~-~~~~~~~~~~~~~~p~l~~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  374 (438)
                        +.+++||+ +++.+..++++  .+-..+|+ -..|.|.+|+.+++++|+...|+..            ..++.++++-
T Consensus       537 ~~~sKLvvi~IaNTmdlPEr~l--~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~------------~~f~~~aiel  602 (767)
T KOG1514|consen  537 LKNSKLVVIAIANTMDLPERLL--MNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL------------DAFENKAIEL  602 (767)
T ss_pred             CCCCceEEEEecccccCHHHHh--ccchhhhccceeeecCCCCHHHHHHHHHHhhcch------------hhcchhHHHH
Confidence              35666666 44555556665  34455666 4689999999999999999988754            2234455554


Q ss_pred             HHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          375 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       375 ~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      .+++ .++   -.|+.|....++++|.+.+..+...+  ..+....|++-|+.+|+..+.
T Consensus       603 vark-VAa---vSGDaRraldic~RA~Eia~~~~~~~--k~~~~q~v~~~~v~~Ai~em~  656 (767)
T KOG1514|consen  603 VARK-VAA---VSGDARRALDICRRAAEIAEERNVKG--KLAVSQLVGILHVMEAINEML  656 (767)
T ss_pred             HHHH-HHh---ccccHHHHHHHHHHHHHHhhhhcccc--cccccceeehHHHHHHHHHHh
Confidence            4443 321   25677888999999999987776633  234456788999999988764

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.23  E-value=3.6e-11  Score=114.46  Aligned_cols=144  Identities=21%  Similarity=0.218  Sum_probs=92.7

Q ss_pred             hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCc------------
Q 013706          163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGIL------------  229 (438)
Q Consensus       163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------  229 (438)
                      ++.|.+.+...+..+....               ...+| +||+||||||||++|.++|+.+......            
T Consensus         2 ~~~~~~~~~~~l~~~~~~~---------------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~   66 (325)
T COG0470           2 ELVPWQEAVKRLLVQALES---------------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCK   66 (325)
T ss_pred             CcccchhHHHHHHHHHHhc---------------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhh
Confidence            3456666666555553211               13455 9999999999999999999999732211            


Q ss_pred             -----CCCCEEEeecccccccccccchHHHHHHHHH---c----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc
Q 013706          230 -----PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE---A----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM  297 (438)
Q Consensus       230 -----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~  297 (438)
                           ....++++++++.....+  ....++++.+.   .    ...|++|||+|.+...           +.+.|+..+
T Consensus        67 ~~~~~~~~d~lel~~s~~~~~~i--~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-----------A~nallk~l  133 (325)
T COG0470          67 LIPAGNHPDFLELNPSDLRKIDI--IVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-----------AANALLKTL  133 (325)
T ss_pred             HHhhcCCCceEEecccccCCCcc--hHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-----------HHHHHHHHh
Confidence                 123677888776544321  12233333322   2    2379999999999874           449999999


Q ss_pred             cC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHH
Q 013706          298 DG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEE  340 (438)
Q Consensus       298 ~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e  340 (438)
                      +.  ....+|++++  ....+   -|.+++|+ ..++|++++..+
T Consensus       134 Eep~~~~~~il~~n--~~~~i---l~tI~SRc-~~i~f~~~~~~~  172 (325)
T COG0470         134 EEPPKNTRFILITN--DPSKI---LPTIRSRC-QRIRFKPPSRLE  172 (325)
T ss_pred             ccCCCCeEEEEEcC--Chhhc---cchhhhcc-eeeecCCchHHH
Confidence            86  4455555544  22222   57889998 899998865543

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.23  E-value=3.3e-11  Score=101.79  Aligned_cols=136  Identities=18%  Similarity=0.239  Sum_probs=82.0

Q ss_pred             ChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC---------------
Q 013706          166 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP---------------  230 (438)
Q Consensus       166 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~---------------  230 (438)
                      |++.+.+.+...+..               ..-+..+||+||+|+||+++|+.+|+.+.......               
T Consensus         1 gq~~~~~~L~~~~~~---------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~   65 (162)
T PF13177_consen    1 GQEEIIELLKNLIKS---------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEG   65 (162)
T ss_dssp             S-HHHHHHHHHHHHC---------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHc---------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhc
Confidence            677777777776431               12344479999999999999999999886543321               


Q ss_pred             -CCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--C
Q 013706          231 -TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--G  300 (438)
Q Consensus       231 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~  300 (438)
                       ...++.++...... .  -....++.+.+..       ...|++|||+|.|..           .+.|.||..||+  .
T Consensus        66 ~~~d~~~~~~~~~~~-~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEepp~  131 (162)
T PF13177_consen   66 NHPDFIIIKPDKKKK-S--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEEPPE  131 (162)
T ss_dssp             -CTTEEEEETTTSSS-S--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHSTTT
T ss_pred             cCcceEEEecccccc-h--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcCCCC
Confidence             22333333322100 0  1224555555544       236999999999987           455999999998  3


Q ss_pred             CEEEEEec-CChhHHHHhhhCcCccCCCCcceeCCCCC
Q 013706          301 KVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHFNDFN  337 (438)
Q Consensus       301 ~v~vi~~~-~~~~~~~~~~~~p~l~~R~~~~i~~~~~~  337 (438)
                      .+++|+.+ +.+.+      -|.+++|+ ..+.|++++
T Consensus       132 ~~~fiL~t~~~~~i------l~TI~SRc-~~i~~~~ls  162 (162)
T PF13177_consen  132 NTYFILITNNPSKI------LPTIRSRC-QVIRFRPLS  162 (162)
T ss_dssp             TEEEEEEES-GGGS-------HHHHTTS-EEEEE----
T ss_pred             CEEEEEEECChHHC------hHHHHhhc-eEEecCCCC
Confidence            45555554 34443      67889998 888887764

...

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=9.6e-11  Score=120.18  Aligned_cols=176  Identities=19%  Similarity=0.354  Sum_probs=122.6

Q ss_pred             HHHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706          155 DELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  233 (438)
Q Consensus       155 ~~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~  233 (438)
                      -.+.+.+ +.++||+++...|-+.+....       .|.... .+...++|.||.|+|||-+|+++|..++-    ....
T Consensus       554 ~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr-------~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fg----se~~  621 (898)
T KOG1051|consen  554 KKLEERLHERVIGQDEAVAAIAAAIRRSR-------AGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFG----SEEN  621 (898)
T ss_pred             HHHHHHHHhhccchHHHHHHHHHHHHhhh-------cccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcC----Cccc
Confidence            3344444 468899998888887654332       222222 36677999999999999999999998853    2347


Q ss_pred             EEEeeccc------ccc---cccccchH-HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC---
Q 013706          234 VTEVQRTD------LVG---EFVGHTGP-KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---  300 (438)
Q Consensus       234 ~~~~~~~~------~~~---~~~g~~~~-~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~---  300 (438)
                      ++.++.++      +.+   .|+|+++. .+.+.++.-..+||+|||||+..+           .+++.|++.+|+|   
T Consensus       622 ~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~-----------~v~n~llq~lD~Grlt  690 (898)
T KOG1051|consen  622 FIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP-----------DVLNILLQLLDRGRLT  690 (898)
T ss_pred             eEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH-----------HHHHHHHHHHhcCccc
Confidence            78887774      323   37777554 777777777889999999999987           5669999999863   


Q ss_pred             ----------CEEEEEecCChhHH-----------------------------HHh------hhCcCccCCCCcceeCCC
Q 013706          301 ----------KVVVIFAGYSEPMK-----------------------------RVI------ASNEGFCRRVTKFFHFND  335 (438)
Q Consensus       301 ----------~v~vi~~~~~~~~~-----------------------------~~~------~~~p~l~~R~~~~i~~~~  335 (438)
                                +.+||+|.+...-.                             ...      ...|.+..|.+..+.|.+
T Consensus       691 Ds~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~  770 (898)
T KOG1051|consen  691 DSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLP  770 (898)
T ss_pred             cCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecc
Confidence                      46788875321110                             000      011455667888888999


Q ss_pred             CCHHHHHHHHHHHHhccc
Q 013706          336 FNSEELAKILHIKMNNQT  353 (438)
Q Consensus       336 ~~~~e~~~il~~~l~~~~  353 (438)
                      ++.++..+|....+.+..
T Consensus       771 l~~~~~~~i~~~~~~e~~  788 (898)
T KOG1051|consen  771 LDRDELIEIVNKQLTEIE  788 (898)
T ss_pred             cchhhHhhhhhhHHHHHH
Confidence            999888888887776553

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.19  E-value=9.4e-11  Score=110.10  Aligned_cols=132  Identities=13%  Similarity=0.127  Sum_probs=88.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----------------EEEeecccccccccccchHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----------------VTEVQRTDLVGEFVGHTGPKTRRRIKE  260 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~  260 (438)
                      .+..+||+||+|+|||++|+.+|+.+.........+                 +..+.+..- ++.  -.-..++.+.+.
T Consensus        21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~   97 (328)
T PRK05707         21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF   97 (328)
T ss_pred             cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence            345689999999999999999999886432211111                 222211100 000  122345555443


Q ss_pred             c-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcce
Q 013706          261 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF  331 (438)
Q Consensus       261 a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i  331 (438)
                      +       ...|++|||+|+|..           .+.|.||..+++  +..++|++|+....  +   .|.+++|+ ..+
T Consensus        98 ~~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp~~~~fiL~t~~~~~--l---l~TI~SRc-~~~  160 (328)
T PRK05707         98 VVQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPSGDTVLLLISHQPSR--L---LPTIKSRC-QQQ  160 (328)
T ss_pred             HhhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCCCCeEEEEEECChhh--C---cHHHHhhc-eee
Confidence            3       236999999999987           445999999998  55666666544322  2   78999998 779


Q ss_pred             eCCCCCHHHHHHHHHHHH
Q 013706          332 HFNDFNSEELAKILHIKM  349 (438)
Q Consensus       332 ~~~~~~~~e~~~il~~~l  349 (438)
                      .|++|+.++..+.+....
T Consensus       161 ~~~~~~~~~~~~~L~~~~  178 (328)
T PRK05707        161 ACPLPSNEESLQWLQQAL  178 (328)
T ss_pred             eCCCcCHHHHHHHHHHhc
Confidence            999999999988887643

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.17  E-value=1e-10  Score=104.88  Aligned_cols=92  Identities=34%  Similarity=0.420  Sum_probs=86.1

Q ss_pred             CCCCcHHHHHHHcCC-----HHHHHHHhcCCCCCCc---ccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCC
Q 013706            2 QMAQTPLHVSAGYNK-----AEIVKSLLEWPGNDKV---ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN   73 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~-----~~~v~~Ll~~~~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~   73 (438)
                      .+|.||||+|+..|+     .++++.|++    .++   ..+..|..|+||||+|+..|+.+++++|++.|++++..+..
T Consensus       104 ~~g~t~l~~a~~~~~~~~~~~~~~~~ll~----~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~  179 (235)
T COG0666         104 ADGDTPLHLAALNGNPPEGNIEVAKLLLE----AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY  179 (235)
T ss_pred             CCCCcHHHHHHhcCCcccchHHHHHHHHH----cCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccC
Confidence            479999999999999     999999999    566   67777999999999999999999999999999999999999


Q ss_pred             CCcHHHHHhhcccccCcHHHHHHHHhCC
Q 013706           74 GMTPLHLSVWYSIRSEDYATVKTLLEYN  101 (438)
Q Consensus        74 g~t~L~~A~~~~~~~~~~~~~~~Ll~~g  101 (438)
                      |.|++++|+    ..++..++..++..+
T Consensus       180 g~t~l~~a~----~~~~~~~~~~l~~~~  203 (235)
T COG0666         180 GVTALDPAA----KNGRIELVKLLLDKG  203 (235)
T ss_pred             CCcchhhhc----ccchHHHHHHHHhcC
Confidence            999999999    889999999999876

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=99.17  E-value=5.2e-10  Score=104.65  Aligned_cols=158  Identities=22%  Similarity=0.239  Sum_probs=105.5

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  240 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  240 (438)
                      |.-++|++..+..|---  .+              ...-.++|+.|+.|||||+++|+|+..|....... ++-+.+++.
T Consensus        16 f~aivGqd~lk~aL~l~--av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~   78 (423)
T COG1239          16 FTAIVGQDPLKLALGLN--AV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD   78 (423)
T ss_pred             hhhhcCchHHHHHHhhh--hc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence            56778998888776532  11              23456899999999999999999999884322222 222233332


Q ss_pred             cc----------------------------------cccccccc--hHHHH--------HHHHHccCcEEEEeCcccccC
Q 013706          241 DL----------------------------------VGEFVGHT--GPKTR--------RRIKEAEGGILFVDEAYRLIP  276 (438)
Q Consensus       241 ~~----------------------------------~~~~~g~~--~~~~~--------~~~~~a~~~il~iDEid~l~~  276 (438)
                      +-                                  ....+|..  ++.++        .++.+|..||||+||+..|..
T Consensus        79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d  158 (423)
T COG1239          79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD  158 (423)
T ss_pred             ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH
Confidence            21                                  11123321  11111        245667789999999988864


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCC---------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCC-HHH
Q 013706          277 MQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEE  340 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~~~~~---------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~-~~e  340 (438)
                                 .+++.||..+..+               ++++|++.|+..- .+   -|.|++||...+....|+ .++
T Consensus       159 -----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG-eL---rpqLlDRfg~~v~~~~~~~~~~  223 (423)
T COG1239         159 -----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG-EL---RPQLLDRFGLEVDTHYPLDLEE  223 (423)
T ss_pred             -----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc-cc---chhhHhhhcceeeccCCCCHHH
Confidence                       6778899888763               4577777666532 33   788999999999987665 588


Q ss_pred             HHHHHHHHHh
Q 013706          341 LAKILHIKMN  350 (438)
Q Consensus       341 ~~~il~~~l~  350 (438)
                      +.+|+++.+.
T Consensus       224 rv~Ii~r~~~  233 (423)
T COG1239         224 RVEIIRRRLA  233 (423)
T ss_pred             HHHHHHHHHH
Confidence            8899887765

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.14  E-value=2.2e-10  Score=92.17  Aligned_cols=94  Identities=48%  Similarity=0.717  Sum_probs=85.8

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccc
Q 013706           37 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD  116 (438)
Q Consensus        37 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~  116 (438)
                      .|..|+||||+|+..++.+++++|++.+.+.+..+..|.||||+|+    ..++.++++.|+..+++++..+..+.||+ 
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~----~~~~~~~~~~ll~~~~~~~~~~~~~~~~l-   77 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAA----KNGHLEIVKLLLEKGADVNARDKDGNTPL-   77 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHH-
Confidence            4678999999999999999999999999999999999999999999    78889999999999999999999999999 


Q ss_pred             ccccCCCchhHHHHHHhcc
Q 013706          117 HLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus       117 ~~a~~~~~~~~~~lL~~~~  135 (438)
                      +.+...+..+++++|...+
T Consensus        78 ~~a~~~~~~~~~~~L~~~~   96 (126)
T cd00204          78 HLAARNGNLDVVKLLLKHG   96 (126)
T ss_pred             HHHHHcCcHHHHHHHHHcC
Confidence            6666677889999998766

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.13  E-value=2.6e-11  Score=122.73  Aligned_cols=128  Identities=27%  Similarity=0.274  Sum_probs=118.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccc-cCCCCcHHHHHhh
Q 013706            5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANNGMTPLHLSVW   83 (438)
Q Consensus         5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~   83 (438)
                      .|+|-.||..||.+.|.+|+.    .|+++..+|+.|.+||.+|+..||..+|+.|+.+.+++..+ |+.+.|+|.+|| 
T Consensus       758 ~t~LT~acaggh~e~vellv~----rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac-  832 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVV----RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC-  832 (2131)
T ss_pred             cccccccccCccHHHHHHHHH----hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec-
Confidence            589999999999999999998    79999999999999999999999999999999999999885 889999999999 


Q ss_pred             cccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           84 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        84 ~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                         ..|+++++++||.+|++-..++....||| .++..+++.+++.+|+..|.....+
T Consensus       833 ---sggr~~vvelLl~~gankehrnvsDytPl-sla~Sggy~~iI~~llS~GseInSr  886 (2131)
T KOG4369|consen  833 ---SGGRTRVVELLLNAGANKEHRNVSDYTPL-SLARSGGYTKIIHALLSSGSEINSR  886 (2131)
T ss_pred             ---CCCcchHHHHHHHhhccccccchhhcCch-hhhcCcchHHHHHHHhhcccccccc
Confidence               99999999999999999999999999999 6666688999999999988654443

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=99.13  E-value=1.4e-09  Score=96.12  Aligned_cols=92  Identities=21%  Similarity=0.305  Sum_probs=63.0

Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-CEEEEEecCCh--------hHHHHhhhCcCccCCCCcceeC
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSE--------PMKRVIASNEGFCRRVTKFFHF  333 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~v~vi~~~~~~--------~~~~~~~~~p~l~~R~~~~i~~  333 (438)
                      +|||||||+|.|--           +....|-+.+++. .-+||+|+++-        ++..-.-..|.|++|+ .+|..
T Consensus       297 PGVLFIDEVhMLDi-----------EcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Iirt  364 (456)
T KOG1942|consen  297 PGVLFIDEVHMLDI-----------ECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LIIRT  364 (456)
T ss_pred             CcceEeeehhhhhh-----------HHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEEee
Confidence            59999999998853           5667777888872 23444554321        1111111136789998 88999


Q ss_pred             CCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH
Q 013706          334 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  377 (438)
Q Consensus       334 ~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (438)
                      -+|+.++..+|++.....+.           ..++++++..+..
T Consensus       365 ~~y~~~e~r~Ii~~Ra~~E~-----------l~~~e~a~~~l~~  397 (456)
T KOG1942|consen  365 LPYDEEEIRQIIKIRAQVEG-----------LQVEEEALDLLAE  397 (456)
T ss_pred             ccCCHHHHHHHHHHHHhhhc-----------ceecHHHHHHHHh
Confidence            99999999999998887653           3456677777766

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=99.13  E-value=1.6e-10  Score=109.20  Aligned_cols=209  Identities=17%  Similarity=0.222  Sum_probs=119.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc-----cccccc---ccchHHH-HHHHHHccCcEEEE
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-----LVGEFV---GHTGPKT-RRRIKEAEGGILFV  268 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~---g~~~~~~-~~~~~~a~~~il~i  268 (438)
                      ..-|+||.|.||||||.+.+.+++....        -+.+++..     +.....   ...+..+ ...+-.|.+||++|
T Consensus        56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr--------~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccI  127 (331)
T PF00493_consen   56 GNIHILLVGDPGTGKSQLLKYVAKLAPR--------SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCI  127 (331)
T ss_dssp             -S--EEEECSCHHCHHHHHHCCCCT-SS--------EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEE
T ss_pred             cccceeeccchhhhHHHHHHHHHhhCCc--------eEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeee
Confidence            4569999999999999999988654321        12222211     111100   0111111 24677889999999


Q ss_pred             eCcccccCCCCCCCchhHHHHHHHHHhhccCCC---------------EEEEEecCChhHH--------HHhhhCcCccC
Q 013706          269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMK--------RVIASNEGFCR  325 (438)
Q Consensus       269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~~--------~~~~~~p~l~~  325 (438)
                      ||+|++...           ....|.+.|+.+.               ..|+++.++..-.        .-+...++|++
T Consensus       128 De~dk~~~~-----------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS  196 (331)
T PF00493_consen  128 DEFDKMKED-----------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS  196 (331)
T ss_dssp             CTTTT--CH-----------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC
T ss_pred             cccccccch-----------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh
Confidence            999999763           3488999998632               3666666544311        11123579999


Q ss_pred             CCCcceeC-CCCCHHHHHHHHHHHHhcccccc--------------c--------cc-cccccccccHHHHHHHHHHHhh
Q 013706          326 RVTKFFHF-NDFNSEELAKILHIKMNNQTEDS--------------L--------LY-GFKLHSSCSMDAIAALIEKETT  381 (438)
Q Consensus       326 R~~~~i~~-~~~~~~e~~~il~~~l~~~~~~~--------------~--------~~-~~~~~~~~~~~~~~~~~~~~~~  381 (438)
                      |||.++.+ +.++.+.=..+.++.+.......              .        .+ +..+.|.+++++...+..+|..
T Consensus       197 RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~  276 (331)
T PF00493_consen  197 RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVE  276 (331)
T ss_dssp             C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCC
T ss_pred             hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHH
Confidence            99988775 66666555566665555543221              0        01 1146677888887777777652


Q ss_pred             Hhh-------hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          382 EKQ-------RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       382 ~~~-------~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      -..       ..+...|.+..++.-+...|..|+.         ..|+.+|+..|+..+.
T Consensus       277 lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr---------~~V~~~Dv~~Ai~L~~  327 (331)
T PF00493_consen  277 LRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLR---------DEVTEEDVEEAIRLFE  327 (331)
T ss_dssp             CCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTS---------SECSHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhHHHHHHHHHHHHHHhcc---------CceeHHHHHHHHHHHH
Confidence            211       1345678999998888777755554         5789999999998875

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=99.12  E-value=5.1e-10  Score=112.36  Aligned_cols=195  Identities=17%  Similarity=0.181  Sum_probs=126.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccc--hH--------HHHHHHHHccCcEEEE
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT--GP--------KTRRRIKEAEGGILFV  268 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~--------~~~~~~~~a~~~il~i  268 (438)
                      -.++++.|++||||++++++++..+..     ..+|+.+..+--....+|-.  +.        .....+.+|.+|||||
T Consensus        25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~l   99 (584)
T PRK13406         25 LGGVVLRARAGPVRDRWLAALRALLPA-----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVL   99 (584)
T ss_pred             cceEEEEcCCCcHHHHHHHHHHHhcCC-----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEe
Confidence            368999999999999999999987743     23677666665555555542  11        1234677888999999


Q ss_pred             eCcccccCCCCCCCchhHHHHHHHHHhhccCCCE---------------EEEEecCChhHHHHhhhCcCccCCCCcceeC
Q 013706          269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---------------VVIFAGYSEPMKRVIASNEGFCRRVTKFFHF  333 (438)
Q Consensus       269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v---------------~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~  333 (438)
                      ||+..+.+           .+++.|++.|+++.+               .+|++  .++........+++++||+..+.+
T Consensus       100 De~n~~~~-----------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat--~~~~~~~~~L~~~lLDRf~l~v~v  166 (584)
T PRK13406        100 AMAERLEP-----------GTAARLAAALDTGEVRLERDGLALRLPARFGLVAL--DEGAEEDERAPAALADRLAFHLDL  166 (584)
T ss_pred             cCcccCCH-----------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec--CCChhcccCCCHHhHhheEEEEEc
Confidence            99988876           677999999998643               44554  322222223378899999999999


Q ss_pred             CCCCHHHHH-------HHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc-cccchHHHHHHHHHHhh
Q 013706          334 NDFNSEELA-------KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM-NGGLVDPMLVNARENLD  405 (438)
Q Consensus       334 ~~~~~~e~~-------~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~~~l~~~~~~a~~~~~  405 (438)
                      +.++..+..       +|.... .         .+. +..++++.+..++.-+..    ... ..|.-..++.-|.-.|+
T Consensus       167 ~~~~~~~~~~~~~~~~~I~~AR-~---------rl~-~v~v~~~~l~~i~~~~~~----~gv~S~Ra~i~llraARa~Aa  231 (584)
T PRK13406        167 DGLALRDAREIPIDADDIAAAR-A---------RLP-AVGPPPEAIAALCAAAAA----LGIASLRAPLLALRAARAAAA  231 (584)
T ss_pred             CCCChHHhcccCCCHHHHHHHH-H---------HHc-cCCCCHHHHHHHHHHHHH----hCCCCcCHHHHHHHHHHHHHH
Confidence            999876542       122111 0         011 245666777666643321    111 33555555555555552


Q ss_pred             ccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          406 LRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       406 ~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                               -++...|+.+|+.+|+..+.+
T Consensus       232 ---------L~Gr~~V~~~dv~~Aa~lvL~  252 (584)
T PRK13406        232 ---------LAGRTAVEEEDLALAARLVLA  252 (584)
T ss_pred             ---------HcCCCCCCHHHHHHHHHHHHH
Confidence                     235578999999999887654

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.10  E-value=1.1e-10  Score=109.75  Aligned_cols=93  Identities=26%  Similarity=0.157  Sum_probs=79.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccc-cCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~   80 (438)
                      ..|.|+||-|+-.||.+||++|++    .|+|+|+.|.+||||||+|+..++..+++.|++.|+.+-+. -.++.|+.--
T Consensus       581 dEGITaLHNAiCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eK  656 (752)
T KOG0515|consen  581 DEGITALHNAICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEK  656 (752)
T ss_pred             ccchhHHhhhhhcchhHHHHHHHh----cCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhh
Confidence            368999999999999999999999    79999999999999999999999999999999999887553 4567787654


Q ss_pred             HhhcccccCcHHHHHHHHhC
Q 013706           81 SVWYSIRSEDYATVKTLLEY  100 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~  100 (438)
                      .-.+  ..|...|..+|...
T Consensus       657 Cee~--eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  657 CEEM--EEGYDQCSQYLYGV  674 (752)
T ss_pred             cchh--hhhHHHHHHHHHHH
Confidence            3332  56778888888743

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.09  E-value=3.2e-10  Score=93.64  Aligned_cols=127  Identities=22%  Similarity=0.232  Sum_probs=72.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc--------------ccccchHHHHHHHHHccC-
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------------FVGHTGPKTRRRIKEAEG-  263 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~a~~-  263 (438)
                      +.+++|+||||||||++++.++..+....    ..++.+++......              ............+..++. 
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL   77 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCC----CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence            46799999999999999999999776532    24566666543321              112233445555555543 


Q ss_pred             --cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC--hhHHHHhhhCcCccCCCCcceeCCCC
Q 013706          264 --GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS--EPMKRVIASNEGFCRRVTKFFHFNDF  336 (438)
Q Consensus       264 --~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~--~~~~~~~~~~p~l~~R~~~~i~~~~~  336 (438)
                        .+|||||++.+....+......... ..............+|++++.  ...      ...+..|++..+.++.+
T Consensus        78 ~~~viiiDei~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~  147 (148)
T smart00382       78 KPDVLILDEITSLLDAEQEALLLLLEE-LRLLLLLKSEKNLTVILTTNDEKDLG------PALLRRRFDRRIVLLLI  147 (148)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHhhhh-hHHHHHHHhcCCCEEEEEeCCCccCc------hhhhhhccceEEEecCC
Confidence              9999999999987443100000000 001122223355677777663  121      23344477777766543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08116 hypothetical protein; Validated

Probab=99.06  E-value=3.1e-09  Score=97.27  Aligned_cols=129  Identities=16%  Similarity=0.129  Sum_probs=72.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccc----ccchHHHHHHHHHc-cCcEEEEeCccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV----GHTGPKTRRRIKEA-EGGILFVDEAYR  273 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~a-~~~il~iDEid~  273 (438)
                      ..+++|+||||||||.||.++++.+...+    .+++.++.++++..+.    +........+++.. ...+|+|||++.
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~----~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~  189 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKG----VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGA  189 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence            35799999999999999999999986543    2667777776655432    11111222344433 347999999964


Q ss_pred             ccCCCCCCCchhHHHHHHHHHhh-ccCCCEEEEEecCChhHHHHhhhCcCccCCC---CcceeCCCCCH
Q 013706          274 LIPMQKADDKDYGIEALEEIMSV-MDGGKVVVIFAGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNS  338 (438)
Q Consensus       274 l~~~~~~~~~~~~~~~~~~ll~~-~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~---~~~i~~~~~~~  338 (438)
                      -..      ++.....+..++.. ++.+.. +|++|+..+-+..-..++.+.+|+   ...|.|+.++.
T Consensus       190 e~~------t~~~~~~l~~iin~r~~~~~~-~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~  251 (268)
T PRK08116        190 ERD------TEWAREKVYNIIDSRYRKGLP-TIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY  251 (268)
T ss_pred             CCC------CHHHHHHHHHHHHHHHHCCCC-EEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence            321      22222222222222 223444 444444333221111256677775   45567766664

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.06  E-value=3.9e-10  Score=116.54  Aligned_cols=158  Identities=28%  Similarity=0.391  Sum_probs=111.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCC
Q 013706           43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP  122 (438)
Q Consensus        43 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~  122 (438)
                      +.||.|+..|+.+++++|++.|+++|.+|..|+||||+||    ..|+.+++++|+++|++++..|.+|+||| |.|...
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa----~~g~~eiv~~LL~~Gadvn~~d~~G~TpL-h~A~~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIAC----ANGHVQVVRVLLEFGADPTLLDKDGKTPL-ELAEEN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH----HCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHC
Confidence            3588999999999999999999999999999999999999    88999999999999999999999999999 666668


Q ss_pred             CchhHHHHHHhccchHHHHHHHHHhhhhhhhHHHHHHHHhhhcChHHHH--HHHHHHHHHhhhHHHHHhc-CCCCCCCCC
Q 013706          123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELK--IQLRKWAKGMLLDERRKAL-GLKVGARRP  199 (438)
Q Consensus       123 ~~~~~~~lL~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~i~G~~~~~--~~l~~~~~~~~~~~~~~~~-~~~~~~~~~  199 (438)
                      ++.+++++|+.+........+.   .    .    ...+   .|.....  ..+..         ..+.. .........
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga~---~----~----~~~~---~g~~~~~~~~~~~~---------~~~d~~~~p~p~~~~  215 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGAN---A----K----PDSF---TGKPPSLEDSPISS---------HHPDFSAVPQPMMGS  215 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCCC---C----C----cccc---CCCCccchhhhhhh---------ccccccccCcccccc
Confidence            8899999998773221100000   0    0    0000   0100000  00000         00000 000011123


Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      ..+++.|-||+|||++|+.|++.+...++
T Consensus       216 ~~~~~vglp~~GKStia~~L~~~l~~~~~  244 (664)
T PTZ00322        216 LIVIMVGLPGRGKTYVARQIQRYFQWNGL  244 (664)
T ss_pred             eeEEecccCCCChhHHHHHHHHHHHhcCC
Confidence            45889999999999999999999987655

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.05  E-value=2.5e-09  Score=99.58  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=82.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC--------------CEEEeeccccccccccc------chHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD--------------RVTEVQRTDLVGEFVGH------TGPKTRRRI  258 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~g~------~~~~~~~~~  258 (438)
                      +..+||+||+|+||+++|.++|+.+........+              .+..+..   ....-|.      .-..++++.
T Consensus        26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~---~p~~~~~k~~~~I~idqIR~l~  102 (319)
T PRK08769         26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF---IPNRTGDKLRTEIVIEQVREIS  102 (319)
T ss_pred             ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec---CCCcccccccccccHHHHHHHH
Confidence            3458999999999999999999988643211111              1111100   0000111      122344444


Q ss_pred             HHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecC-ChhHHHHhhhCcCccCCCC
Q 013706          259 KEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY-SEPMKRVIASNEGFCRRVT  328 (438)
Q Consensus       259 ~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~-~~~~~~~~~~~p~l~~R~~  328 (438)
                      +..       ...|++||++|.|..           .+.|.||..+|+  ...++|+.++ ...+      -|.+++|+ 
T Consensus       103 ~~~~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~~~fiL~~~~~~~l------LpTIrSRC-  164 (319)
T PRK08769        103 QKLALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPSPGRYLWLISAQPARL------PATIRSRC-  164 (319)
T ss_pred             HHHhhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCCCCCeEEEEECChhhC------chHHHhhh-
Confidence            432       226999999999986           445999999998  3454555433 3332      68899998 


Q ss_pred             cceeCCCCCHHHHHHHHHH
Q 013706          329 KFFHFNDFNSEELAKILHI  347 (438)
Q Consensus       329 ~~i~~~~~~~~e~~~il~~  347 (438)
                      ..+.|++|+.++..+.+..
T Consensus       165 q~i~~~~~~~~~~~~~L~~  183 (319)
T PRK08769        165 QRLEFKLPPAHEALAWLLA  183 (319)
T ss_pred             eEeeCCCcCHHHHHHHHHH
Confidence            8999999999988877764

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.04  E-value=6e-10  Score=104.59  Aligned_cols=132  Identities=17%  Similarity=0.158  Sum_probs=86.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC-CCC-----------------EEEeecccccc--------------c
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-TDR-----------------VTEVQRTDLVG--------------E  245 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~-~~~-----------------~~~~~~~~~~~--------------~  245 (438)
                      -+..+||+||+|+||+++|+.+|+.+....... ..+                 +..+.+.....              .
T Consensus        20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~   99 (342)
T PRK06964         20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD   99 (342)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence            456789999999999999999999886533211 111                 22221110000              0


Q ss_pred             ccc---------cchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEe
Q 013706          246 FVG---------HTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA  307 (438)
Q Consensus       246 ~~g---------~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~  307 (438)
                      --|         -.-..++.+.+..       ...|++||++|.|..           .+.|.||..+|+  ..+++|+.
T Consensus       100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~  168 (342)
T PRK06964        100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEEPPPGTVFLLV  168 (342)
T ss_pred             cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCCcCcEEEEE
Confidence            000         0123445444432       236999999999986           444999999998  45555555


Q ss_pred             cCC-hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHH
Q 013706          308 GYS-EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI  347 (438)
Q Consensus       308 ~~~-~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~  347 (438)
                      |+. +.+      .|.+++|+ ..+.|++|+.++..+.+..
T Consensus       169 t~~~~~L------LpTI~SRc-q~i~~~~~~~~~~~~~L~~  202 (342)
T PRK06964        169 SARIDRL------LPTILSRC-RQFPMTVPAPEAAAAWLAA  202 (342)
T ss_pred             ECChhhC------cHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence            433 333      78899998 8999999999999888865

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=98.98  E-value=1.1e-09  Score=102.19  Aligned_cols=133  Identities=11%  Similarity=0.134  Sum_probs=86.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee---------cccccccc--ccc--chHHHHHHHHHc----
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ---------RTDLVGEF--VGH--TGPKTRRRIKEA----  261 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~---------~~~~~~~~--~g~--~~~~~~~~~~~a----  261 (438)
                      +..+||+||+|+||+++|+.+|+.+.........++-.+.         -+++..-.  -|.  .-..++++.+..    
T Consensus        24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~  103 (325)
T PRK06871         24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA  103 (325)
T ss_pred             ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence            4457899999999999999999988643321111211110         01111000  011  233455544432    


Q ss_pred             ---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCC
Q 013706          262 ---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF  336 (438)
Q Consensus       262 ---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~  336 (438)
                         ...|++||++|+|..           .+.|.||..+|+  ..+++|++++...  .+   .|.+++|+ ..+.|++|
T Consensus       104 ~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEEPp~~~~fiL~t~~~~--~l---lpTI~SRC-~~~~~~~~  166 (325)
T PRK06871        104 QQGGNKVVYIQGAERLTE-----------AAANALLKTLEEPRPNTYFLLQADLSA--AL---LPTIYSRC-QTWLIHPP  166 (325)
T ss_pred             ccCCceEEEEechhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChH--hC---chHHHhhc-eEEeCCCC
Confidence               237999999999986           444999999998  4555555543322  22   78899998 89999999


Q ss_pred             CHHHHHHHHHHH
Q 013706          337 NSEELAKILHIK  348 (438)
Q Consensus       337 ~~~e~~~il~~~  348 (438)
                      +.++..+.+...
T Consensus       167 ~~~~~~~~L~~~  178 (325)
T PRK06871        167 EEQQALDWLQAQ  178 (325)
T ss_pred             CHHHHHHHHHHH
Confidence            999988888764

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.97  E-value=2.1e-09  Score=94.12  Aligned_cols=89  Identities=22%  Similarity=0.194  Sum_probs=80.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccc-cCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   80 (438)
                      ..|.+||..|+..|+.++|+.|++    .|+|+|.. +..+.||||+|+..|+.++.++|++.|+.+...|.-|+|+-..
T Consensus        43 ~sGMs~LahAaykGnl~~v~lll~----~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqm  118 (396)
T KOG1710|consen   43 PSGMSVLAHAAYKGNLTLVELLLE----LGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQM  118 (396)
T ss_pred             CCcccHHHHHHhcCcHHHHHHHHH----hCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHH
Confidence            479999999999999999999999    78888864 4679999999999999999999999999999999999999999


Q ss_pred             HhhcccccCcHHHHHHHH
Q 013706           81 SVWYSIRSEDYATVKTLL   98 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll   98 (438)
                      |+    --|+.+++.++-
T Consensus       119 AA----FVG~H~CV~iIN  132 (396)
T KOG1710|consen  119 AA----FVGHHECVAIIN  132 (396)
T ss_pred             HH----HhcchHHHHHHh
Confidence            98    568888887653

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.97  E-value=2.5e-08  Score=88.63  Aligned_cols=134  Identities=18%  Similarity=0.229  Sum_probs=81.7

Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHH-------HHhhhCcCccCCCCcceeCC
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK-------RVIASNEGFCRRVTKFFHFN  334 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~-------~~~~~~p~l~~R~~~~i~~~  334 (438)
                      +|||||||+|.|--           +..+.|-+.+++ -..++|++||+--..       ...-.+-.|++|+ .+|.-.
T Consensus       289 pGVLFIDEvHMLDI-----------EcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII~t~  356 (454)
T KOG2680|consen  289 PGVLFIDEVHMLDI-----------ECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LIISTQ  356 (454)
T ss_pred             cceEEEeeehhhhh-----------HHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-heeecc
Confidence            49999999988853           555677777776 233444444211100       0000023467787 889999


Q ss_pred             CCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCC
Q 013706          335 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLD  414 (438)
Q Consensus       335 ~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~  414 (438)
                      +|+.++...||+..+.++.           ...+++++..+..--.      ....|-..+++-.|...+..|       
T Consensus       357 py~~~d~~~IL~iRc~EEd-----------v~m~~~A~d~Lt~i~~------~tsLRYai~Lit~a~~~~~kr-------  412 (454)
T KOG2680|consen  357 PYTEEDIKKILRIRCQEED-----------VEMNPDALDLLTKIGE------ATSLRYAIHLITAASLVCLKR-------  412 (454)
T ss_pred             cCcHHHHHHHHHhhhhhhc-----------cccCHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHh-------
Confidence            9999999999999988753           3456677777665332      222344556665555544333       


Q ss_pred             hhhhhhccHHHHHHHHHHHH
Q 013706          415 TDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       415 ~~~~~~i~~~d~~~a~~~~~  434 (438)
                        .-..+..+|+..++..+.
T Consensus       413 --k~~~v~~~di~r~y~LFl  430 (454)
T KOG2680|consen  413 --KGKVVEVDDIERVYRLFL  430 (454)
T ss_pred             --cCceeehhHHHHHHHHHh
Confidence              124566777777776653

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=98.95  E-value=2e-09  Score=108.14  Aligned_cols=238  Identities=19%  Similarity=0.272  Sum_probs=139.1

Q ss_pred             HhhhcChHHHHHHHHH-HHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          161 LSNIVGLHELKIQLRK-WAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .-.+.|.+.+|+.|.= +...+.     +........+..-|+||.|.||||||.+-+.+++.+.. +     -+..-.+
T Consensus       285 aPsIyG~e~VKkAilLqLfgGv~-----k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr-~-----vytsgkg  353 (682)
T COG1241         285 APSIYGHEDVKKAILLQLFGGVK-----KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR-G-----VYTSGKG  353 (682)
T ss_pred             cccccCcHHHHHHHHHHhcCCCc-----ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc-e-----EEEcccc
Confidence            3456788887776542 211110     00000011223468999999999999999999986632 1     1111111


Q ss_pred             cc---c---------cccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCE-----
Q 013706          240 TD---L---------VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV-----  302 (438)
Q Consensus       240 ~~---~---------~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v-----  302 (438)
                      ++   +         .++|.=+     ..++-.|.+||..|||+|++.....           +.+.+.|+...|     
T Consensus       354 ss~~GLTAav~rd~~tge~~Le-----aGALVlAD~Gv~cIDEfdKm~~~dr-----------~aihEaMEQQtIsIaKA  417 (682)
T COG1241         354 SSAAGLTAAVVRDKVTGEWVLE-----AGALVLADGGVCCIDEFDKMNEEDR-----------VAIHEAMEQQTISIAKA  417 (682)
T ss_pred             ccccCceeEEEEccCCCeEEEe-----CCEEEEecCCEEEEEeccCCChHHH-----------HHHHHHHHhcEeeeccc
Confidence            11   1         1112111     1344567889999999999976433           788888876332     


Q ss_pred             ----------EEEEecCChh--------HHHHhhhCcCccCCCCcceeC-CCCCHHHHHHHHHHHHhccc----cc----
Q 013706          303 ----------VVIFAGYSEP--------MKRVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKMNNQT----ED----  355 (438)
Q Consensus       303 ----------~vi~~~~~~~--------~~~~~~~~p~l~~R~~~~i~~-~~~~~~e~~~il~~~l~~~~----~~----  355 (438)
                                -|++|.|+..        ...-+..+++|++|||..+-+ +.|+.+.=..+..+.+....    ..    
T Consensus       418 GI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~  497 (682)
T COG1241         418 GITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISL  497 (682)
T ss_pred             ceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccc
Confidence                      2233332211        122233347899999887765 55665444444444443331    00    


Q ss_pred             -------------ccc---ccc-cccccccHHHHHHHHHHHhhHhhh---------ccccccchHHHHHHHHHHhhcccc
Q 013706          356 -------------SLL---YGF-KLHSSCSMDAIAALIEKETTEKQR---------REMNGGLVDPMLVNARENLDLRLS  409 (438)
Q Consensus       356 -------------~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~n~~~l~~~~~~a~~~~~~r~~  409 (438)
                                   ...   |.. ...|.++.++.+.+...|..-.-.         .+-..|.|..++.-+...|..|++
T Consensus       498 ~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS  577 (682)
T COG1241         498 DGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLS  577 (682)
T ss_pred             ccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhcc
Confidence                         011   222 255788999988888887632211         245578888888888777766666


Q ss_pred             CCCCChhhhhhccHHHHHHHHHHHH
Q 013706          410 FDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       410 ~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                               ..|+.+|+.+|++.+.
T Consensus       578 ---------~~V~~eD~~eAi~lv~  593 (682)
T COG1241         578 ---------DVVEEEDVDEAIRLVD  593 (682)
T ss_pred             ---------CCCCHHHHHHHHHHHH
Confidence                     4688999999998876

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=98.94  E-value=1.7e-08  Score=95.19  Aligned_cols=204  Identities=16%  Similarity=0.153  Sum_probs=120.6

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ..+.|.+.-...++++....            +....+..+.+.|.||||||..-..+-..+...+.  ....+.+++.+
T Consensus       150 ~~l~gRe~e~~~v~~F~~~h------------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~--~~~~v~inc~s  215 (529)
T KOG2227|consen  150 GTLKGRELEMDIVREFFSLH------------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK--SPVTVYINCTS  215 (529)
T ss_pred             CCccchHHHHHHHHHHHHhh------------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcc--cceeEEEeecc
Confidence            45677777777777764433            23456778899999999999887765544432221  11336677664


Q ss_pred             cc------c----c----cccc-chHHHHHHHHH----cc-CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc--cC
Q 013706          242 LV------G----E----FVGH-TGPKTRRRIKE----AE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--DG  299 (438)
Q Consensus       242 ~~------~----~----~~g~-~~~~~~~~~~~----a~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~--~~  299 (438)
                      +.      .    .    ..|. ++......|++    .. .-++++||+|.|..+.+        .++..|.++=  -+
T Consensus       216 l~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~--------~vLy~lFewp~lp~  287 (529)
T KOG2227|consen  216 LTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ--------TVLYTLFEWPKLPN  287 (529)
T ss_pred             ccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc--------ceeeeehhcccCCc
Confidence            21      1    1    1221 22222333433    22 36899999999997666        3333333322  23


Q ss_pred             CCEEEEE-ecCChhHHHHhhhCcCccCCC---CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHH
Q 013706          300 GKVVVIF-AGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL  375 (438)
Q Consensus       300 ~~v~vi~-~~~~~~~~~~~~~~p~l~~R~---~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (438)
                      .++++|+ |+.-+..+++   -|.|..|.   +..+.|++|+.+++.+|+...+....-         .. +-+.+++-.
T Consensus       288 sr~iLiGiANslDlTdR~---LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t---------~~-~~~~Aie~~  354 (529)
T KOG2227|consen  288 SRIILIGIANSLDLTDRF---LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST---------SI-FLNAAIELC  354 (529)
T ss_pred             ceeeeeeehhhhhHHHHH---hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc---------cc-cchHHHHHH
Confidence            4555555 4444444455   35555433   889999999999999999999988642         12 223456666


Q ss_pred             HHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          376 IEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       376 ~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +++..+    ..|+.|.+..++.+|++.+
T Consensus       355 ArKvaa----~SGDlRkaLdv~R~aiEI~  379 (529)
T KOG2227|consen  355 ARKVAA----PSGDLRKALDVCRRAIEIA  379 (529)
T ss_pred             HHHhcc----CchhHHHHHHHHHHHHHHH
Confidence            665542    1344566666666666654

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=98.94  E-value=1.8e-09  Score=101.35  Aligned_cols=132  Identities=19%  Similarity=0.206  Sum_probs=83.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC------------------CCCEEEeeccccccccccc-----chHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP------------------TDRVTEVQRTDLVGEFVGH-----TGPKT  254 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~g~-----~~~~~  254 (438)
                      -+..+||+||+|+|||++|+.+|+.+.......                  ...++.+.+..-. .--|.     .-..+
T Consensus        20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~i   98 (325)
T PRK08699         20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDAV   98 (325)
T ss_pred             cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHHH
Confidence            345689999999999999999999886422111                  1223334332100 00010     22345


Q ss_pred             HHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccC
Q 013706          255 RRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCR  325 (438)
Q Consensus       255 ~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~  325 (438)
                      +.+.+.+       ...|++||+++.+.+..           .+.|+..+++  ...++|++|+...  .+   .|.+++
T Consensus        99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a-----------~naLLk~LEep~~~~~~Ilvth~~~--~l---l~ti~S  162 (325)
T PRK08699         99 REIIDNVYLTSVRGGLRVILIHPAESMNLQA-----------ANSLLKVLEEPPPQVVFLLVSHAAD--KV---LPTIKS  162 (325)
T ss_pred             HHHHHHHhhCcccCCceEEEEechhhCCHHH-----------HHHHHHHHHhCcCCCEEEEEeCChH--hC---hHHHHH
Confidence            5555443       23799999999998743           3788888876  2354555544322  22   577888


Q ss_pred             CCCcceeCCCCCHHHHHHHHHH
Q 013706          326 RVTKFFHFNDFNSEELAKILHI  347 (438)
Q Consensus       326 R~~~~i~~~~~~~~e~~~il~~  347 (438)
                      |+ ..+.|++|+.++..+.+..
T Consensus       163 Rc-~~~~~~~~~~~~~~~~L~~  183 (325)
T PRK08699        163 RC-RKMVLPAPSHEEALAYLRE  183 (325)
T ss_pred             Hh-hhhcCCCCCHHHHHHHHHh
Confidence            88 9999999999998877754

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=98.93  E-value=9.7e-09  Score=95.56  Aligned_cols=129  Identities=10%  Similarity=0.154  Sum_probs=84.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC----------------CCEEEeecccccccccccchHHHHHHHHHc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA  261 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a  261 (438)
                      -+..+||+||.|+||+++|+.+|+.+........                ..+..+.+.. .++.+  .-..++.+.+..
T Consensus        24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~  100 (319)
T PRK06090         24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLA  100 (319)
T ss_pred             cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHH
Confidence            3456899999999999999999998864321100                1122222110 00111  122344443332


Q ss_pred             -------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecC-ChhHHHHhhhCcCccCCCCcce
Q 013706          262 -------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY-SEPMKRVIASNEGFCRRVTKFF  331 (438)
Q Consensus       262 -------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~-~~~~~~~~~~~p~l~~R~~~~i  331 (438)
                             ...|++||++|.|..           .+.|.||..+|+  .++++|+.++ +..+      -|.+++|+ ..+
T Consensus       101 ~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~l------LpTI~SRC-q~~  162 (319)
T PRK06090        101 QESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEPAPNCLFLLVTHNQKRL------LPTIVSRC-QQW  162 (319)
T ss_pred             hhCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC------hHHHHhcc-eeE
Confidence                   237999999999986           444999999998  4455555543 3333      68889998 899


Q ss_pred             eCCCCCHHHHHHHHHH
Q 013706          332 HFNDFNSEELAKILHI  347 (438)
Q Consensus       332 ~~~~~~~~e~~~il~~  347 (438)
                      .|++|+.++..+.+..
T Consensus       163 ~~~~~~~~~~~~~L~~  178 (319)
T PRK06090        163 VVTPPSTAQAMQWLKG  178 (319)
T ss_pred             eCCCCCHHHHHHHHHH
Confidence            9999999998887754

>PF13173 AAA_14: AAA domain

Probab=98.93  E-value=7.6e-09  Score=83.99  Aligned_cols=121  Identities=19%  Similarity=0.259  Sum_probs=74.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIP  276 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~  276 (438)
                      +.++++||.|||||++++.+++.+.     ....++.++..+..........  +.+.+.+.   ...+|||||++.+..
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~-----~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~   75 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLL-----PPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD   75 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc-----ccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc
Confidence            4689999999999999999998765     1225566666554332111100  22223222   458999999988841


Q ss_pred             CCCCCCchhHHHHHHHHHhhccCC-CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHH
Q 013706          277 MQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL  341 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~~~~~-~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~  341 (438)
                                  ....+....|.+ ++.+|++++......- .....+.+|. ..+++.|++-+|.
T Consensus        76 ------------~~~~lk~l~d~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~-~~~~l~Plsf~E~  127 (128)
T PF13173_consen   76 ------------WEDALKFLVDNGPNIKIILTGSSSSLLSK-DIAESLAGRV-IEIELYPLSFREF  127 (128)
T ss_pred             ------------HHHHHHHHHHhccCceEEEEccchHHHhh-cccccCCCeE-EEEEECCCCHHHh
Confidence                        223444444443 5666666655444311 2256777887 6888999887763

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=7.2e-09  Score=98.72  Aligned_cols=135  Identities=16%  Similarity=0.285  Sum_probs=95.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchH----HHHHHHHHccC---cEEEEeC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP----KTRRRIKEAEG---GILFVDE  270 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~a~~---~il~iDE  270 (438)
                      +-..+||.||||+|||+||-.+|.....       ||+.+-.++-   .+|-++.    .+.++|+.|..   +||++|+
T Consensus       537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~F-------PFvKiiSpe~---miG~sEsaKc~~i~k~F~DAYkS~lsiivvDd  606 (744)
T KOG0741|consen  537 PLVSVLLEGPPGSGKTALAAKIALSSDF-------PFVKIISPED---MIGLSESAKCAHIKKIFEDAYKSPLSIIVVDD  606 (744)
T ss_pred             cceEEEEecCCCCChHHHHHHHHhhcCC-------CeEEEeChHH---ccCccHHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence            4567999999999999999999986654       8887655432   3454432    46788888854   8999999


Q ss_pred             cccccCCCCCCCchhHHHHHHHHHhhccC----C-CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCH-HHHHHH
Q 013706          271 AYRLIPMQKADDKDYGIEALEEIMSVMDG----G-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKI  344 (438)
Q Consensus       271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~----~-~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~-~e~~~i  344 (438)
                      ++.|..-- .-++.++.-++.+|+-++..    + +.+|+++|+...+..    .=.+...|+..|.+|..+. ++..++
T Consensus       607 iErLiD~v-pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~----~m~i~~~F~~~i~Vpnl~~~~~~~~v  681 (744)
T KOG0741|consen  607 IERLLDYV-PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ----EMGILDCFSSTIHVPNLTTGEQLLEV  681 (744)
T ss_pred             hhhhhccc-ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH----HcCHHHhhhheeecCccCchHHHHHH
Confidence            99997522 12356777888888888864    3 455555544433321    2346778999999999986 777777


Q ss_pred             HHH
Q 013706          345 LHI  347 (438)
Q Consensus       345 l~~  347 (438)
                      +..
T Consensus       682 l~~  684 (744)
T KOG0741|consen  682 LEE  684 (744)
T ss_pred             HHH
Confidence            653

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=98.92  E-value=5.6e-09  Score=98.42  Aligned_cols=129  Identities=10%  Similarity=0.060  Sum_probs=83.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----------------EEEeecccccccccccchHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----------------VTEVQRTDLVGEFVGHTGPKTRRRIKE  260 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~  260 (438)
                      -+..+||+||+|+||+++|+++|+.+.........+                 +..+.+..- +..  -.-..++.+.+.
T Consensus        23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~idqiR~l~~~   99 (334)
T PRK07993         23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS--LGVDAVREVTEK   99 (334)
T ss_pred             cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc--CCHHHHHHHHHH
Confidence            344578999999999999999999885422111111                 111211100 000  122344554443


Q ss_pred             c-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec-CChhHHHHhhhCcCccCCCCcc
Q 013706          261 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKF  330 (438)
Q Consensus       261 a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~-~~~~~~~~~~~~p~l~~R~~~~  330 (438)
                      .       ...|++||++|+|..           .+.|.||..+|+  ...++|+.+ ++..+      -|.+++|+ ..
T Consensus       100 ~~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~l------LpTIrSRC-q~  161 (334)
T PRK07993        100 LYEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEEPPENTWFFLACREPARL------LATLRSRC-RL  161 (334)
T ss_pred             HhhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC------hHHHHhcc-cc
Confidence            2       237999999999987           445999999998  445555553 33333      68889998 68


Q ss_pred             eeCCCCCHHHHHHHHHH
Q 013706          331 FHFNDFNSEELAKILHI  347 (438)
Q Consensus       331 i~~~~~~~~e~~~il~~  347 (438)
                      +.|++|+.++..+.+..
T Consensus       162 ~~~~~~~~~~~~~~L~~  178 (334)
T PRK07993        162 HYLAPPPEQYALTWLSR  178 (334)
T ss_pred             ccCCCCCHHHHHHHHHH
Confidence            89999999988887754

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.92  E-value=1.2e-08  Score=91.54  Aligned_cols=100  Identities=17%  Similarity=0.279  Sum_probs=61.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc---cchHHHHHHHHHc-cCcEEEEeCcccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEA-EGGILFVDEAYRL  274 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~a-~~~il~iDEid~l  274 (438)
                      ..+++|+||||||||.+|.++++++...+.    .++.++.+++...+.+   ........+++.. ...+|+|||++..
T Consensus        99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~----~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~  174 (244)
T PRK07952         99 IASFIFSGKPGTGKNHLAAAICNELLLRGK----SVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ  174 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhcCC----eEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence            358999999999999999999999876443    5666677666643322   1111222344433 4579999999876


Q ss_pred             cCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEec
Q 013706          275 IPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAG  308 (438)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~  308 (438)
                      ..      ++....++..++..-.+ ..-++|.++
T Consensus       175 ~~------s~~~~~~l~~Ii~~Ry~~~~~tiitSN  203 (244)
T PRK07952        175 TE------SRYEKVIINQIVDRRSSSKRPTGMLTN  203 (244)
T ss_pred             CC------CHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence            42      33444455555544322 344444443

>PRK12377 putative replication protein; Provisional

Probab=98.89  E-value=1.1e-08  Score=91.87  Aligned_cols=73  Identities=26%  Similarity=0.368  Sum_probs=48.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccccc--chHHHHHHHHHc-cCcEEEEeCccccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH--TGPKTRRRIKEA-EGGILFVDEAYRLI  275 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~a-~~~il~iDEid~l~  275 (438)
                      ..+++|+||||||||.+|.+|++.+...+.    .++.++..++...+-..  ......+.++.. ...+|+|||++...
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~----~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~  176 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR----SVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQR  176 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence            368999999999999999999999876443    45556666655432110  001122334433 44799999997653

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=98.87  E-value=1.3e-08  Score=90.20  Aligned_cols=92  Identities=24%  Similarity=0.379  Sum_probs=68.4

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-----ccccchH-------HHHHHHHHccCc
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTGP-------KTRRRIKEAEGG  264 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~  264 (438)
                      .+..++||.||+|.||+.+||.|.+.-. ..--.+++|++++|+.+.+.     ++|+...       .-..++..|.+|
T Consensus       206 rsr~p~ll~gptgagksflarriyelk~-arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg  284 (531)
T COG4650         206 RSRAPILLNGPTGAGKSFLARRIYELKQ-ARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG  284 (531)
T ss_pred             hccCCeEeecCCCcchhHHHHHHHHHHH-HHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence            3567899999999999999999976432 22234579999999876543     5665221       223567788899


Q ss_pred             EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC
Q 013706          265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG  300 (438)
Q Consensus       265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~  300 (438)
                      .||+|||..+..+.|           ..||..++++
T Consensus       285 mlfldeigelgadeq-----------amllkaieek  309 (531)
T COG4650         285 MLFLDEIGELGADEQ-----------AMLLKAIEEK  309 (531)
T ss_pred             eEehHhhhhcCccHH-----------HHHHHHHHhh
Confidence            999999999987665           6788888764

>PRK08181 transposase; Validated

Probab=98.87  E-value=1.5e-08  Score=92.24  Aligned_cols=75  Identities=24%  Similarity=0.335  Sum_probs=50.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc-cchHHHHHHHHHc-cCcEEEEeCccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKEA-EGGILFVDEAYRLI  275 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~a-~~~il~iDEid~l~  275 (438)
                      ...+++|+||||||||.+|.++++++...|.    .++.++..+++..+.. .......+.++.. +.-+|+|||++.+.
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~----~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~  180 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGW----RVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT  180 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCC----ceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence            3468999999999999999999998865443    4556666666554311 1112233344433 44799999998876


Q ss_pred             C
Q 013706          276 P  276 (438)
Q Consensus       276 ~  276 (438)
                      .
T Consensus       181 ~  181 (269)
T PRK08181        181 K  181 (269)
T ss_pred             C
Confidence            4

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.1e-08  Score=103.28  Aligned_cols=150  Identities=21%  Similarity=0.244  Sum_probs=115.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEEEeecccc--cccccccchHHHHHHHHHcc----CcEEEE
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRTDL--VGEFVGHTGPKTRRRIKEAE----GGILFV  268 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~a~----~~il~i  268 (438)
                      ...|-+|.|+||+|||.++.-+++.....++   .....++.++...+  ..++-|+.+.+++.+.+++.    +-||||
T Consensus       207 tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfi  286 (898)
T KOG1051|consen  207 TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFL  286 (898)
T ss_pred             CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            4478999999999999999999998754332   22344555555433  34577888889998888643    369999


Q ss_pred             eCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHH
Q 013706          269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK  348 (438)
Q Consensus       269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~  348 (438)
                      ||+|.+.....+   .....+.+.|...+..+.+.+|+||+.+.+.+.+..+|++.+|| ..+.++.|+.++...|+...
T Consensus       287 gelh~lvg~g~~---~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l  362 (898)
T KOG1051|consen  287 GELHWLVGSGSN---YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSLILPGL  362 (898)
T ss_pred             cceeeeecCCCc---chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhhhhhhh
Confidence            999999876543   12456778888888888899999999888889999999999999 67788999988877777654


Q ss_pred             Hhc
Q 013706          349 MNN  351 (438)
Q Consensus       349 l~~  351 (438)
                      -.+
T Consensus       363 ~~~  365 (898)
T KOG1051|consen  363 SER  365 (898)
T ss_pred             hhh
Confidence            443

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.84  E-value=2e-07  Score=84.06  Aligned_cols=163  Identities=18%  Similarity=0.265  Sum_probs=81.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe-ecc------cc-------------cccc-----------
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV-QRT------DL-------------VGEF-----------  246 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~-~~~------~~-------------~~~~-----------  246 (438)
                      +...++++||.|+|||++.+.+.+.+...+..  ..++.. ...      .+             ....           
T Consensus        19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   96 (234)
T PF01637_consen   19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYK--VVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK   96 (234)
T ss_dssp             -SSEEEEEESTTSSHHHHHHHHHHHCT--EEC--CCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred             cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCc--EEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence            45789999999999999999999877321110  000000 000      00             0000           


Q ss_pred             --cccchHHHHHHHHH---c-cCcEEEEeCccccc-CCCCCCCchhHHHHHHHHHhhc----cCCCEEEEEecCChhHH-
Q 013706          247 --VGHTGPKTRRRIKE---A-EGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVM----DGGKVVVIFAGYSEPMK-  314 (438)
Q Consensus       247 --~g~~~~~~~~~~~~---a-~~~il~iDEid~l~-~~~~~~~~~~~~~~~~~ll~~~----~~~~v~vi~~~~~~~~~-  314 (438)
                        .......+..+++.   . ...||+|||++.+. ....  ..    ..+..|...+    ....+.+|++++...+. 
T Consensus        97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--~~----~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~  170 (234)
T PF01637_consen   97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--DK----DFLKSLRSLLDSLLSQQNVSIVITGSSDSLME  170 (234)
T ss_dssp             TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--TH----HHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--hH----HHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence              00112233333332   2 34899999999998 3221  11    2233333333    33556555555544333 


Q ss_pred             HHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHH
Q 013706          315 RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE  379 (438)
Q Consensus       315 ~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (438)
                      .+....+++..|+.. +.+++++.++..++++....+. .       .+  ..+++.+..+..-+
T Consensus       171 ~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~-------~~--~~~~~~~~~i~~~~  224 (234)
T PF01637_consen  171 EFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-I-------KL--PFSDEDIEEIYSLT  224 (234)
T ss_dssp             HTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC----------------HHHHHHHHHHH
T ss_pred             HhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-h-------cc--cCCHHHHHHHHHHh
Confidence            434456778889966 9999999999999999987753 1       12  23666666655543

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.83  E-value=2.7e-09  Score=108.52  Aligned_cols=128  Identities=27%  Similarity=0.341  Sum_probs=94.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc--CCCChHHHHHHHcCCHHHHHHHHHCCCCcccc-cCCCCcHHHHH
Q 013706            5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANNGMTPLHLS   81 (438)
Q Consensus         5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A   81 (438)
                      +|||.+|...|++++++.||.    +|+.+|.+.  +.|-.||++|+++||...++.|++.|.|+|.+ ..+-+|+|.+|
T Consensus       858 ytPlsla~Sggy~~iI~~llS----~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla  933 (2131)
T KOG4369|consen  858 YTPLSLARSGGYTKIIHALLS----SGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLA  933 (2131)
T ss_pred             cCchhhhcCcchHHHHHHHhh----cccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeec
Confidence            577777777777777777777    566666654  45777888888888888888888888877775 33456777777


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      +    -.|+.+++.+||.+.+++..+-+-|.||| +-++.++..++-.+|+..|++.+..
T Consensus       934 ~----fqgr~evv~lLLa~~anvehRaktgltpl-me~AsgGyvdvg~~li~~gad~nas  988 (2131)
T KOG4369|consen  934 L----FQGRPEVVFLLLAAQANVEHRAKTGLTPL-MEMASGGYVDVGNLLIAAGADTNAS  988 (2131)
T ss_pred             c----ccCcchHHHHHHHHhhhhhhhcccCCccc-chhhcCCccccchhhhhcccccccC
Confidence            7    55677778888877777777777788888 6666677777777777777765443

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.80  E-value=7.1e-08  Score=90.52  Aligned_cols=73  Identities=19%  Similarity=0.253  Sum_probs=48.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc---cchHHHHHHHHHccC-cEEEEeCcccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEAEG-GILFVDEAYRL  274 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~a~~-~il~iDEid~l  274 (438)
                      ..+++|+||||||||.||.++|+++...+.    .++.++..+++..+..   .........++.... -+|+|||++..
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~----~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e  258 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGK----SVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE  258 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence            378999999999999999999999865443    5666776666554321   111111112333333 79999999776


Q ss_pred             c
Q 013706          275 I  275 (438)
Q Consensus       275 ~  275 (438)
                      .
T Consensus       259 ~  259 (329)
T PRK06835        259 K  259 (329)
T ss_pred             C
Confidence            4

>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]

Probab=98.79  E-value=1.7e-07  Score=91.40  Aligned_cols=248  Identities=19%  Similarity=0.256  Sum_probs=138.0

Q ss_pred             HHhhhcChHHHHHHHH-HHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          160 ELSNIVGLHELKIQLR-KWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      -+-.|.|.+.+|.-|. .+...+     ++..+...+.+...||++.|.|||||+-+-++.+..+.. ++...+...  +
T Consensus       343 l~PsIyGhe~VK~GilL~LfGGv-----~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR-~vYtsGkaS--S  414 (764)
T KOG0480|consen  343 LFPSIYGHELVKAGILLSLFGGV-----HKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR-SVYTSGKAS--S  414 (764)
T ss_pred             hCccccchHHHHhhHHHHHhCCc-----cccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc-ceEecCccc--c
Confidence            3556788888877654 222222     111122344456779999999999999999999875532 111111110  0


Q ss_pred             ccccccccccc--chHH--HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCE------------
Q 013706          239 RTDLVGEFVGH--TGPK--TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV------------  302 (438)
Q Consensus       239 ~~~~~~~~~g~--~~~~--~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v------------  302 (438)
                      ++.+....+-.  +..-  -..++-.|.+||--|||+|++--+.|           .++.+.|+...|            
T Consensus       415 aAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq-----------vAihEAMEQQtISIaKAGv~aTLn  483 (764)
T KOG0480|consen  415 AAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ-----------VAIHEAMEQQTISIAKAGVVATLN  483 (764)
T ss_pred             cccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH-----------HHHHHHHHhheehheecceEEeec
Confidence            01111111110  0000  01234456789999999999987666           788888886322            


Q ss_pred             ---EEEEecC--------ChhHHHHhhhCcCccCCCCcce-eCCCCCHHHHHHHHHHHHhcccccccc------------
Q 013706          303 ---VVIFAGY--------SEPMKRVIASNEGFCRRVTKFF-HFNDFNSEELAKILHIKMNNQTEDSLL------------  358 (438)
Q Consensus       303 ---~vi~~~~--------~~~~~~~~~~~p~l~~R~~~~i-~~~~~~~~e~~~il~~~l~~~~~~~~~------------  358 (438)
                         .+|+|+|        ...+..-+...+++.+|||..+ -++.++...=..|.++.+.........            
T Consensus       484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~v  563 (764)
T KOG0480|consen  484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQV  563 (764)
T ss_pred             chhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHH
Confidence               3344432        1222233334589999997754 468888766666666665543211000            


Q ss_pred             -----ccccccccccHHHHHHHHHHHhhHhhhc---------cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHH
Q 013706          359 -----YGFKLHSSCSMDAIAALIEKETTEKQRR---------EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLE  424 (438)
Q Consensus       359 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~  424 (438)
                           |...+.|.++.++-+.+.+.|.+-....         +-..|.|..++.-+...|  |+       +-...+|.+
T Consensus       564 rkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~A--r~-------~~~devt~~  634 (764)
T KOG0480|consen  564 RKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARA--RV-------ECRDEVTKE  634 (764)
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHH--hh-------hhhhhccHH
Confidence                 1114455566666666666554322222         344577777765443333  11       123468999


Q ss_pred             HHHHHHHHHHh
Q 013706          425 DLEAGLKLLLR  435 (438)
Q Consensus       425 d~~~a~~~~~~  435 (438)
                      |+.+|++.++.
T Consensus       635 ~v~ea~eLlk~  645 (764)
T KOG0480|consen  635 DVEEAVELLKK  645 (764)
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.79  E-value=7.5e-09  Score=60.11  Aligned_cols=28  Identities=57%  Similarity=0.829  Sum_probs=16.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCcc
Q 013706           41 GETPLHMAAKNGCNEAAKLLLAHGAFIE   68 (438)
Q Consensus        41 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   68 (438)
                      |+||||+||..|+.+++++|+++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5555565555555555555555555554

>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]

Probab=98.78  E-value=2.6e-08  Score=97.66  Aligned_cols=211  Identities=19%  Similarity=0.276  Sum_probs=111.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc--ccc---cchHH--HHHHHHHccCcEEEEeC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--FVG---HTGPK--TRRRIKEAEGGILFVDE  270 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~~--~~~~~~~a~~~il~iDE  270 (438)
                      ..-||||.|.||||||-+-+.+++.+.. |...++     .++.-++-  |+-   ++..-  -..++-.+.+||--|||
T Consensus       461 ~~INILL~GDPGtsKSqlLqyv~~l~pR-g~yTSG-----kGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDE  534 (804)
T KOG0478|consen  461 GDINILLVGDPGTSKSQLLQYCHRLLPR-GVYTSG-----KGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDE  534 (804)
T ss_pred             ccceEEEecCCCcCHHHHHHHHHHhCCc-ceeecC-----CccchhcceeeEEecCccceeeeecCcEEEcCCceEEchh
Confidence            3468999999999999999999997753 222221     11111110  110   00000  01123345679999999


Q ss_pred             cccccCCCCCCCchhHHHHHHHHHhhccCC---------------CEEEEEecC--------ChhHHHHhhhCcCccCCC
Q 013706          271 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGY--------SEPMKRVIASNEGFCRRV  327 (438)
Q Consensus       271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------~v~vi~~~~--------~~~~~~~~~~~p~l~~R~  327 (438)
                      +|+|..+.+           +.|.+.|+..               +--|+++.|        +..+..-+...|.|++||
T Consensus       535 FDKM~dStr-----------SvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRF  603 (804)
T KOG0478|consen  535 FDKMSDSTR-----------SVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRF  603 (804)
T ss_pred             hhhhhHHHH-----------HHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhh
Confidence            999975443           6677777641               224555443        222334445569999999


Q ss_pred             Cccee-CCCCCHHHHHHHHHHHHhccccccc----------------cccc-cccccccHHHHHHHHHHHhhHhhhcccc
Q 013706          328 TKFFH-FNDFNSEELAKILHIKMNNQTEDSL----------------LYGF-KLHSSCSMDAIAALIEKETTEKQRREMN  389 (438)
Q Consensus       328 ~~~i~-~~~~~~~e~~~il~~~l~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n  389 (438)
                      |.++- ++.++..-=..|..+...-..+...                .|.. .+.+.+++++...+...|..-.....++
T Consensus       604 DLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~  683 (804)
T KOG0478|consen  604 DLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGA  683 (804)
T ss_pred             cEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccc
Confidence            87665 4666543222333332222111000                0112 3566777888888887776332222222


Q ss_pred             c------cchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          390 G------GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       390 ~------~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      +      |.+..++..+...+..|.+         ..+...|+++|+..++
T Consensus       684 ~~itat~rQlesLiRlsEahak~r~s---------~~ve~~dV~eA~~l~R  725 (804)
T KOG0478|consen  684 GQITATPRQLESLIRLSEAHAKMRLS---------NRVEEIDVEEAVRLLR  725 (804)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhhcc---------cccchhhHHHHHHHHH
Confidence            2      3444444333333322322         3456778888876654

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=98.75  E-value=1.6e-07  Score=83.88  Aligned_cols=125  Identities=24%  Similarity=0.377  Sum_probs=77.1

Q ss_pred             HHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706          154 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  232 (438)
Q Consensus       154 ~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~  232 (438)
                      .+.++.+++ .+.|+.-+++.|-..++.....         -....|.-+-|+|+|||||..+++.||+.++..|..+.-
T Consensus        73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n---------~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~  143 (344)
T KOG2170|consen   73 LDGLEKDLARALFGQHLAKQLVVNALKSHWAN---------PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPF  143 (344)
T ss_pred             chHHHHHHHHHhhchHHHHHHHHHHHHHHhcC---------CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchh
Confidence            455666665 4789999988887765544211         111233344588999999999999999999875543321


Q ss_pred             CEEEeecccc-----cccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706          233 RVTEVQRTDL-----VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  298 (438)
Q Consensus       233 ~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  298 (438)
                      ....+..-++     +..|--+-...+++-......+++++||+|+|.+           .++++|-..+|
T Consensus       144 V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~-----------gLld~lkpfLd  203 (344)
T KOG2170|consen  144 VHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP-----------GLLDVLKPFLD  203 (344)
T ss_pred             HHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH-----------hHHHHHhhhhc
Confidence            1111111111     1222222333444455556679999999999986           55666666666

>PRK06526 transposase; Provisional

Probab=98.74  E-value=2.4e-08  Score=90.52  Aligned_cols=75  Identities=28%  Similarity=0.337  Sum_probs=47.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc-cchHHHHHHHHH-ccCcEEEEeCccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE-AEGGILFVDEAYRLI  275 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~-a~~~il~iDEid~l~  275 (438)
                      ...+++|+||||||||.+|.+++.++...|.    .+...+..+++..... .........+.. ....+|+|||++.+.
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~----~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~  172 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGH----RVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP  172 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCC----chhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence            4578999999999999999999998866553    2333444444433211 011122233333 345799999999875


Q ss_pred             C
Q 013706          276 P  276 (438)
Q Consensus       276 ~  276 (438)
                      .
T Consensus       173 ~  173 (254)
T PRK06526        173 F  173 (254)
T ss_pred             C
Confidence            4

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.74  E-value=1.6e-08  Score=60.59  Aligned_cols=31  Identities=55%  Similarity=0.811  Sum_probs=18.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCccccc
Q 013706           41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKA   71 (438)
Q Consensus        41 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   71 (438)
                      |+||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5566666666666666666666666655554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF05729 NACHT: NACHT domain

Probab=98.73  E-value=2.6e-07  Score=78.47  Aligned_cols=144  Identities=15%  Similarity=0.240  Sum_probs=80.6

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCC--CCEEEeecccccc------------cccccchHH----HHHHHHHcc
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPT--DRVTEVQRTDLVG------------EFVGHTGPK----TRRRIKEAE  262 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~--~~~~~~~~~~~~~------------~~~g~~~~~----~~~~~~~a~  262 (438)
                      -++++|+||+|||++++.++..+........  ...+.....+...            .........    .....+...
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK   81 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence            3789999999999999999998865443221  1122222222111            001111111    222334445


Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHH
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEE  340 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e  340 (438)
                      ..+|+||-+|.+....+..........+..++..---..+.++.++++.....+       .+++  ...+.+++++.++
T Consensus        82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~-------~~~~~~~~~~~l~~~~~~~  154 (166)
T PF05729_consen   82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDL-------RRRLKQAQILELEPFSEED  154 (166)
T ss_pred             ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHH-------HHhcCCCcEEEECCCCHHH
Confidence            689999999999874432111112233444444311134555555555555322       2222  1578999999999


Q ss_pred             HHHHHHHHHhc
Q 013706          341 LAKILHIKMNN  351 (438)
Q Consensus       341 ~~~il~~~l~~  351 (438)
                      +.++++.++..
T Consensus       155 ~~~~~~~~f~~  165 (166)
T PF05729_consen  155 IKQYLRKYFSN  165 (166)
T ss_pred             HHHHHHHHhhc
Confidence            99999998764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.73  E-value=3.7e-08  Score=92.38  Aligned_cols=86  Identities=31%  Similarity=0.333  Sum_probs=76.0

Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCCCCcccccccC-CCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706            7 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS   85 (438)
Q Consensus         7 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   85 (438)
                      -||.++..|+.+.--.||.    .|+++|..+. .|.||||.|+..|+...+++|+-+|+|++++|.+|.||+-+|-   
T Consensus       136 QLhasvRt~nlet~LRll~----lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR---  208 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLS----LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYAR---  208 (669)
T ss_pred             HHHHHhhcccHHHHHHHHH----cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHH---
Confidence            4899999999887777776    6899999885 5999999999999999999999999999999999999999998   


Q ss_pred             cccCcHHHHHHHHhC
Q 013706           86 IRSEDYATVKTLLEY  100 (438)
Q Consensus        86 ~~~~~~~~~~~Ll~~  100 (438)
                       ..||.++.+.|++.
T Consensus       209 -~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  209 -QGGHHELAERLVEI  222 (669)
T ss_pred             -hcCchHHHHHHHHH
Confidence             88998887766653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=5.7e-09  Score=103.39  Aligned_cols=76  Identities=30%  Similarity=0.466  Sum_probs=45.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCC-CChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      .|+|+||+|+..|..+++++|++    +|++++.+|.. |+||||-|...|+++|+-.|+.+|+.+..+|+.|.+||..-
T Consensus        51 ~GR~alH~~~S~~k~~~l~wLlq----hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~  126 (1267)
T KOG0783|consen   51 YGRTALHIAVSENKNSFLRWLLQ----HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFL  126 (1267)
T ss_pred             hccceeeeeeccchhHHHHHHHh----cCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHH
Confidence            35566666666666666666665    45556666543 66666666666666666666666666666666666665554


Q ss_pred             h
Q 013706           82 V   82 (438)
Q Consensus        82 ~   82 (438)
                      +
T Consensus       127 ~  127 (1267)
T KOG0783|consen  127 S  127 (1267)
T ss_pred             h
Confidence            4

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.69  E-value=5e-08  Score=79.52  Aligned_cols=102  Identities=25%  Similarity=0.302  Sum_probs=60.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCc-CCCCEEEeeccccc------cc---ccc------cchHHH----HHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGIL-PTDRVTEVQRTDLV------GE---FVG------HTGPKT----RRRI  258 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~------~~---~~g------~~~~~~----~~~~  258 (438)
                      ...++++||||+|||++++.+++.+...... ....++.++++...      ..   .++      .+...+    .+.+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l   83 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL   83 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence            4578999999999999999999987531000 02245555554321      11   111      112222    2223


Q ss_pred             HHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          259 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       259 ~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                      +.....+|+|||+|.+. +         ...++.|...+++..+.+|+++++
T Consensus        84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLNESNIKVVLVGTP  125 (131)
T ss_dssp             HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred             HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHhCCCCeEEEEECh
Confidence            33334699999999985 1         367788888888888888887655

>PF13606 Ank_3: Ankyrin repeat

Probab=98.67  E-value=2.3e-08  Score=58.05  Aligned_cols=30  Identities=43%  Similarity=0.611  Sum_probs=27.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccc
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA   36 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~   36 (438)
                      +|+||||+||..|+.++|++|++    .|+++|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~----~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE----HGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH----cCCCCCC
Confidence            59999999999999999999999    6777763

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.67  E-value=2e-08  Score=93.68  Aligned_cols=92  Identities=27%  Similarity=0.240  Sum_probs=64.1

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhC-CCCCcccCCCCCccccc
Q 013706           39 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDH  117 (438)
Q Consensus        39 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~-ga~~~~~d~~g~t~l~~  117 (438)
                      +++..++++|+..|..+.++-+.-.|.|++.+|-+.+|+||.|+    ..|+.+++++|++. +.+++.+|.+|+||| -
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAA----aEG~v~v~kfl~~~~kv~~~~kDRw~rtPl-D  578 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAA----AEGHVEVVKFLLNACKVDPDPKDRWGRTPL-D  578 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeec----ccCceeHHHHHHHHHcCCCChhhccCCCcc-h
Confidence            45566677777777777777666677777777777777777777    67777777777754 677777777777777 4


Q ss_pred             cccCCCchhHHHHHHhcc
Q 013706          118 LSNGPGSAKLRELLLWHS  135 (438)
Q Consensus       118 ~a~~~~~~~~~~lL~~~~  135 (438)
                      -|...++.+++.+|....
T Consensus       579 dA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             HhHhcCcHHHHHHHHHHh
Confidence            445566777777766543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.67  E-value=1.6e-08  Score=100.26  Aligned_cols=102  Identities=26%  Similarity=0.350  Sum_probs=86.7

Q ss_pred             HcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC-CCCcHHHHHhhcccccCcH
Q 013706           13 GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDY   91 (438)
Q Consensus        13 ~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~   91 (438)
                      ..+...-++-++...  .+--.|.+|..|+|+||+++..+...+++.|+++|++++.+|. .|+||||-|.    ..|+.
T Consensus        26 tKs~~Nqlk~F~~k~--c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRai----yyG~i   99 (1267)
T KOG0783|consen   26 TKSEPNQLKGFSEKS--CQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAI----YYGNI   99 (1267)
T ss_pred             hcCChhHHHHHHHHh--hhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhh----hhchH
Confidence            345554455555431  2334888999999999999999999999999999999999986 7999999999    77999


Q ss_pred             HHHHHHHhCCCCCcccCCCCCcccccccc
Q 013706           92 ATVKTLLEYNADCSAKDNEGKTPLDHLSN  120 (438)
Q Consensus        92 ~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~  120 (438)
                      +++..||.+|+...+.|+.|..||+.++.
T Consensus       100 dca~lLL~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  100 DCASLLLSKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence            99999999999999999999999966655

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.66  E-value=3.4e-08  Score=59.12  Aligned_cols=33  Identities=33%  Similarity=0.499  Sum_probs=30.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccC
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM   39 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~   39 (438)
                      +|+||||+||..|+.+++++|++    .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK----HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH----TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH----CcCCCCCCCC
Confidence            69999999999999999999999    7899998774

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PRK09183 transposase/IS protein; Provisional

Probab=98.64  E-value=1.1e-07  Score=86.84  Aligned_cols=75  Identities=25%  Similarity=0.327  Sum_probs=48.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc-cchHHHHHHHHH--ccCcEEEEeCcccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE--AEGGILFVDEAYRL  274 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~--a~~~il~iDEid~l  274 (438)
                      ...+++|+||||||||++|.+++..+...|.    .+..++..++...+.. .....+...+..  ....+++|||++..
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~----~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~  176 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGI----KVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL  176 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence            4568999999999999999999987654442    3444555555433211 111123344433  34579999999876


Q ss_pred             cC
Q 013706          275 IP  276 (438)
Q Consensus       275 ~~  276 (438)
                      ..
T Consensus       177 ~~  178 (259)
T PRK09183        177 PF  178 (259)
T ss_pred             CC
Confidence            44

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=98.62  E-value=2.2e-07  Score=84.86  Aligned_cols=118  Identities=16%  Similarity=0.148  Sum_probs=73.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCc---------CCCCEEEeecccccccccccchHHHHHHHHHc-------c
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------E  262 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~  262 (438)
                      +..+||+||+|+||+.+|..+|+.+......         ....+..+.+.. .++.+  .-..++.+.++.       .
T Consensus        19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e~~   95 (290)
T PRK05917         19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYESP   95 (290)
T ss_pred             CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccCCC
Confidence            4457899999999999999999988642200         011121121110 00001  123344444432       2


Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec-CChhHHHHhhhCcCccCCCCcceeCCCCC
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHFNDFN  337 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~-~~~~~~~~~~~~p~l~~R~~~~i~~~~~~  337 (438)
                      ..|++||++|.|...           +.|.||..+++  ..+++|+.+ +.+.+      .|.+++|+ ..+.|+++.
T Consensus        96 ~kv~ii~~ad~mt~~-----------AaNaLLK~LEEPp~~~~fiL~~~~~~~l------l~TI~SRc-q~~~~~~~~  155 (290)
T PRK05917         96 YKIYIIHEADRMTLD-----------AISAFLKVLEDPPQHGVIILTSAKPQRL------PPTIRSRS-LSIHIPMEE  155 (290)
T ss_pred             ceEEEEechhhcCHH-----------HHHHHHHHhhcCCCCeEEEEEeCChhhC------cHHHHhcc-eEEEccchh
Confidence            379999999999874           44999999997  445555544 33333      68889998 888888654

>PRK06921 hypothetical protein; Provisional

Probab=98.61  E-value=1.7e-07  Score=85.63  Aligned_cols=71  Identities=23%  Similarity=0.389  Sum_probs=44.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHc-CCcCCCCEEEeecccccccccccchHHHHHHHHHc-cCcEEEEeCccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYR  273 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~  273 (438)
                      ...+++|+||||||||.|+.++++++... +.    .++.++..+++..... ........++.. ...+|+|||++.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~----~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~~~dlLiIDDl~~  188 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV----PVLYFPFVEGFGDLKD-DFDLLEAKLNRMKKVEVLFIDDLFK  188 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCc----eEEEEEHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEecccc
Confidence            35689999999999999999999988653 32    4455555554433211 011112223322 347999999943

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.60  E-value=9.4e-08  Score=90.84  Aligned_cols=86  Identities=30%  Similarity=0.459  Sum_probs=72.9

Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhccc
Q 013706            7 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI   86 (438)
Q Consensus         7 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   86 (438)
                      |||+++.....+.+...+...  ....++..|..|+||||+|+.-||..+++.|+..|+++..+|+.||+|||-|+    
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~--~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv----   96 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAK--VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAV----   96 (560)
T ss_pred             ccchhhhccchhhHHHHHhhh--hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHH----
Confidence            599999988877777655421  46779999999999999999999999999999999999999999999999999    


Q ss_pred             ccCcHHHHHHHH
Q 013706           87 RSEDYATVKTLL   98 (438)
Q Consensus        87 ~~~~~~~~~~Ll   98 (438)
                      ..|+..++..++
T Consensus        97 ~~g~~q~i~~vl  108 (560)
T KOG0522|consen   97 STGNEQIITEVL  108 (560)
T ss_pred             HcCCHHHHHHHH
Confidence            667766554444

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.60  E-value=1.3e-07  Score=90.47  Aligned_cols=95  Identities=23%  Similarity=0.284  Sum_probs=80.4

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccc
Q 013706            8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIR   87 (438)
Q Consensus         8 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   87 (438)
                      |.-|+...++..+-+||.|+.....+-...+..|+|+||+||+.|++...++|+=+|+|+.++|.+|+|+|.||-    .
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar----~  703 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYAR----Q  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHh----h
Confidence            455677778888889998754433333445667899999999999999999999999999999999999999998    8


Q ss_pred             cCcHHHHHHHHhCCCCCcc
Q 013706           88 SEDYATVKTLLEYNADCSA  106 (438)
Q Consensus        88 ~~~~~~~~~Ll~~ga~~~~  106 (438)
                      .|..+++.+|+++|+....
T Consensus       704 a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             cccHHHHHHHHHcCCCccc
Confidence            9999999999999987653

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.60  E-value=4.4e-07  Score=82.34  Aligned_cols=75  Identities=25%  Similarity=0.368  Sum_probs=52.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccc--hHHHHHHHH-HccCcEEEEeCcccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT--GPKTRRRIK-EAEGGILFVDEAYRL  274 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~-~a~~~il~iDEid~l  274 (438)
                      ...+++|+||||||||.+|-+|++++...|+    .+..++.++++.++-..-  ...-.++.. ...--+|+|||+...
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~----sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~  179 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI----SVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE  179 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence            5679999999999999999999999975444    677777788776532210  111222333 334579999999776


Q ss_pred             cC
Q 013706          275 IP  276 (438)
Q Consensus       275 ~~  276 (438)
                      ..
T Consensus       180 ~~  181 (254)
T COG1484         180 PF  181 (254)
T ss_pred             cC
Confidence            43

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.59  E-value=2.7e-07  Score=86.02  Aligned_cols=101  Identities=16%  Similarity=0.231  Sum_probs=61.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccccc-chHHHHHHHHHc-cCcEEEEeCccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-EGGILFVDEAYRLI  275 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~a-~~~il~iDEid~l~  275 (438)
                      ...+++|+||||||||.||.++|+++...++    .+..+..++++..+... ........++.. ..-+|+|||+..-.
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~----~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~  230 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV----SSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ  230 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc
Confidence            4579999999999999999999999975543    45555556654442211 011223344444 44799999997653


Q ss_pred             CCCCCCCchhHH-HHHHHHHh-hccCCCEEEEEec
Q 013706          276 PMQKADDKDYGI-EALEEIMS-VMDGGKVVVIFAG  308 (438)
Q Consensus       276 ~~~~~~~~~~~~-~~~~~ll~-~~~~~~v~vi~~~  308 (438)
                      .      ++... +++..++. .+.+..-++|.++
T Consensus       231 ~------s~~~~~~ll~~Il~~R~~~~~~ti~TSN  259 (306)
T PRK08939        231 M------SSWVRDEVLGVILQYRMQEELPTFFTSN  259 (306)
T ss_pred             c------cHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence            2      22222 45555544 3345555555553

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.56  E-value=1.4e-07  Score=80.93  Aligned_cols=73  Identities=22%  Similarity=0.285  Sum_probs=47.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccccc-chHHHHHHHHH-ccCcEEEEeCcccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKE-AEGGILFVDEAYRL  274 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-a~~~il~iDEid~l  274 (438)
                      ...+++|+||||||||.+|-++++++...+.    ++..++.++++..+-.. ......+.+.. ...-+|+|||+...
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~  120 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY----SVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE  120 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc----ceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence            4578999999999999999999998876554    56667777766543211 11122233333 24589999999644

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=98.51  E-value=5.5e-07  Score=82.57  Aligned_cols=128  Identities=15%  Similarity=0.200  Sum_probs=78.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee---------cccccccc-ccc--chHHHHHHHHHc----
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ---------RTDLVGEF-VGH--TGPKTRRRIKEA----  261 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~---------~~~~~~~~-~g~--~~~~~~~~~~~a----  261 (438)
                      -+..+||+||  +||+++|+.+|+.+.........++-.+.         -+|+.--. -|.  .-..++.+.+..    
T Consensus        23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p  100 (290)
T PRK07276         23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG  100 (290)
T ss_pred             cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence            3456799996  68999999999988643321111111110         11111000 011  223455554433    


Q ss_pred             ---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec-CChhHHHHhhhCcCccCCCCcceeCCC
Q 013706          262 ---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHFND  335 (438)
Q Consensus       262 ---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~-~~~~~~~~~~~~p~l~~R~~~~i~~~~  335 (438)
                         ...|++||++|.+...           +.|.||..+++  ...++|+.+ +.+.+      -|.+++|+ ..|.|++
T Consensus       101 ~~~~~kV~II~~ad~m~~~-----------AaNaLLKtLEEPp~~t~~iL~t~~~~~l------LpTI~SRc-q~i~f~~  162 (290)
T PRK07276        101 YEGKQQVFIIKDADKMHVN-----------AANSLLKVIEEPQSEIYIFLLTNDENKV------LPTIKSRT-QIFHFPK  162 (290)
T ss_pred             ccCCcEEEEeehhhhcCHH-----------HHHHHHHHhcCCCCCeEEEEEECChhhC------chHHHHcc-eeeeCCC
Confidence               2379999999999863           44999999998  345555543 33333      68899998 8999977


Q ss_pred             CCHHHHHHHHH
Q 013706          336 FNSEELAKILH  346 (438)
Q Consensus       336 ~~~~e~~~il~  346 (438)
                       +.++..+++.
T Consensus       163 -~~~~~~~~L~  172 (290)
T PRK07276        163 -NEAYLIQLLE  172 (290)
T ss_pred             -cHHHHHHHHH
Confidence             6666666654

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.50  E-value=2.5e-06  Score=84.87  Aligned_cols=55  Identities=22%  Similarity=0.403  Sum_probs=36.9

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..+++.....-.++++.|+....           .+.....-+||+||||||||++++++|++++.
T Consensus        17 ~~~eLavhkkKv~eV~~wl~~~~-----------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   17 TLDELAVHKKKVEEVRSWLEEMF-----------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             CHHHhhccHHHHHHHHHHHHHHh-----------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34556666655566666654321           11122345778999999999999999999853

>PRK14700 recombination factor protein RarA; Provisional

Probab=98.50  E-value=3e-07  Score=83.19  Aligned_cols=114  Identities=14%  Similarity=0.135  Sum_probs=88.3

Q ss_pred             HhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706          294 MSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  373 (438)
Q Consensus       294 l~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~  373 (438)
                      |..+++|.+++|+|||.||...+   +|+|++|+ .++.|.+++.+++..++++.+.....    .+ .....++++++.
T Consensus         1 Lp~vE~G~i~LIGATTENP~f~v---n~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~----~~-~~~~~i~~~al~   71 (300)
T PRK14700          1 MPYVESGKIILIGATTENPTYYL---NDALVSRL-FILRLKRLSLVATQKLIEKALSQDEV----LA-KHKFKIDDGLYN   71 (300)
T ss_pred             CCCccCCcEEEEeecCCCcccee---cHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhc----cC-CcCCCcCHHHHH
Confidence            35678899999999999999877   99999998 99999999999999999999975210    11 123567889999


Q ss_pred             HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706          374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  432 (438)
Q Consensus       374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~  432 (438)
                      .++...       .|++|...|++|.|....     .   +..+ ..||.+++++.+..
T Consensus        72 ~ia~~a-------~GDaR~aLN~LE~a~~~~-----~---~~~~-~~it~~~~~~~~~~  114 (300)
T PRK14700         72 AMHNYN-------EGDCRKILNLLERMFLIS-----T---RGDE-IYLNKELFDQAVGE  114 (300)
T ss_pred             HHHHhc-------CCHHHHHHHHHHHHHhhc-----c---ccCC-CccCHHHHHHHHhH
Confidence            998876       677888999999876421     0   1111 24888888887754

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=98.44  E-value=2e-06  Score=67.63  Aligned_cols=68  Identities=32%  Similarity=0.527  Sum_probs=46.6

Q ss_pred             HHHHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC
Q 013706          154 MDELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP  230 (438)
Q Consensus       154 ~~~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~  230 (438)
                      ...++..+ .++.|++-+.+.+-..+......         .....|.-+.|.||||||||.+++.||+.++..|..+
T Consensus        16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~---------~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S   84 (127)
T PF06309_consen   16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN---------PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKS   84 (127)
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC---------CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCC
Confidence            44455555 46889998888877765544211         1122334455999999999999999999998766443

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=98.41  E-value=1.1e-06  Score=78.54  Aligned_cols=119  Identities=8%  Similarity=0.021  Sum_probs=73.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee---------cccccccc-cc--cchHHHHHHHHH-----
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ---------RTDLVGEF-VG--HTGPKTRRRIKE-----  260 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~---------~~~~~~~~-~g--~~~~~~~~~~~~-----  260 (438)
                      .+...||+||+|+||..+|.++|+.+.....  ..++-.+.         -+|+.--+ .+  -....++++.+.     
T Consensus         6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s   83 (261)
T PRK05818          6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS   83 (261)
T ss_pred             CCcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence            5567899999999999999999998854221  11111111         11111100 00  012233333322     


Q ss_pred             ---ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecC-ChhHHHHhhhCcCccCCCCcceeCC
Q 013706          261 ---AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY-SEPMKRVIASNEGFCRRVTKFFHFN  334 (438)
Q Consensus       261 ---a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~-~~~~~~~~~~~p~l~~R~~~~i~~~  334 (438)
                         +...|++||++|++..           .+.|.||..+++  .+.++|+.+. .+.+      -|.+++|+ ..+.|+
T Consensus        84 ~e~~~~KV~II~~ae~m~~-----------~AaNaLLK~LEEPp~~t~fiLit~~~~~l------LpTI~SRC-q~~~~~  145 (261)
T PRK05818         84 VESNGKKIYIIYGIEKLNK-----------QSANSLLKLIEEPPKNTYGIFTTRNENNI------LNTILSRC-VQYVVL  145 (261)
T ss_pred             hhcCCCEEEEeccHhhhCH-----------HHHHHHHHhhcCCCCCeEEEEEECChHhC------chHhhhhe-eeeecC
Confidence               1247999999999986           455999999998  4455555543 3333      78899998 678888


Q ss_pred             CC
Q 013706          335 DF  336 (438)
Q Consensus       335 ~~  336 (438)
                      .+
T Consensus       146 ~~  147 (261)
T PRK05818        146 SK  147 (261)
T ss_pred             Ch
Confidence            87

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.40  E-value=8.2e-07  Score=81.45  Aligned_cols=138  Identities=18%  Similarity=0.228  Sum_probs=72.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC--EEEeecccccccccccchHHHHHHHHH--------------c
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR--VTEVQRTDLVGEFVGHTGPKTRRRIKE--------------A  261 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------a  261 (438)
                      ...++||.||+|||||++++.+-+.+..      ..  ...++.+...      +...+.+.++.              .
T Consensus        32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~------~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~   99 (272)
T PF12775_consen   32 NGRPVLLVGPSGTGKTSLIQNFLSSLDS------DKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGG   99 (272)
T ss_dssp             CTEEEEEESSTTSSHHHHHHHHHHCSTT------CCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESS
T ss_pred             cCCcEEEECCCCCchhHHHHhhhccCCc------cccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCC
Confidence            4568999999999999999886543221      12  1222222111      11112221111              1


Q ss_pred             cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhh---ccC--------CCEEEEEecCChhHHHHhhhCcCccCCCCcc
Q 013706          262 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF  330 (438)
Q Consensus       262 ~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~  330 (438)
                      +..|+||||+..-.++.-+..  ...+.+.+++..   +|.        .++.+++|.++..-.  ....|.+.|.| .+
T Consensus       100 k~lv~fiDDlN~p~~d~ygtq--~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr--~~is~R~~r~f-~i  174 (272)
T PF12775_consen  100 KKLVLFIDDLNMPQPDKYGTQ--PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR--NPISPRFLRHF-NI  174 (272)
T ss_dssp             SEEEEEEETTT-S---TTS----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT----SHHHHHHTTE-EE
T ss_pred             cEEEEEecccCCCCCCCCCCc--CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC--CCCChHHhhhe-EE
Confidence            227999999976655433221  122344444432   121        256777776543211  11256777777 78


Q ss_pred             eeCCCCCHHHHHHHHHHHHhcc
Q 013706          331 FHFNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       331 i~~~~~~~~e~~~il~~~l~~~  352 (438)
                      +.++.|+.+.+..|+..++...
T Consensus       175 ~~~~~p~~~sl~~If~~il~~~  196 (272)
T PF12775_consen  175 LNIPYPSDESLNTIFSSILQSH  196 (272)
T ss_dssp             EE----TCCHHHHHHHHHHHHH
T ss_pred             EEecCCChHHHHHHHHHHHhhh
Confidence            9999999999999998888753

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.38  E-value=1.3e-06  Score=74.01  Aligned_cols=108  Identities=20%  Similarity=0.238  Sum_probs=62.2

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc----------------------cccccc-hHH----
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----------------------EFVGHT-GPK----  253 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----------------------~~~g~~-~~~----  253 (438)
                      .++++||||+|||+++..++..+...    ..+++.++......                      .+.... ...    
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATK----GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSK   76 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhc----CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHH
Confidence            36899999999999999999877542    22333333322111                      011111 111    


Q ss_pred             HHHHHHHccCcEEEEeCcccccCCCC---CCCchhHHHHHHHHHhhccCCCEEEEEecCChh
Q 013706          254 TRRRIKEAEGGILFVDEAYRLIPMQK---ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP  312 (438)
Q Consensus       254 ~~~~~~~a~~~il~iDEid~l~~~~~---~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~  312 (438)
                      ...........+++|||+..+.+...   ........+.+..|.....+..+.+|++++...
T Consensus        77 ~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~  138 (165)
T cd01120          77 AERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS  138 (165)
T ss_pred             HHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence            11222333568999999998875322   112334456677777777766676666665443

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.37  E-value=4e-07  Score=85.22  Aligned_cols=91  Identities=24%  Similarity=0.235  Sum_probs=83.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHC-CCCcccccCCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A   81 (438)
                      ++..++.+|+..|++..++.+.-    .|.+++.+|.+.+|+||+|+..|+++++++|++. +.+++.+|.+|+|||--|
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l----~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFAL----QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHH----hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            56778999999999999998876    6899999999999999999999999999999985 789999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCC
Q 013706           82 VWYSIRSEDYATVKTLLEYN  101 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~g  101 (438)
                      .    ..+|.+++++|-+..
T Consensus       581 ~----~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  581 K----HFKHKEVVKLLEEAQ  596 (622)
T ss_pred             H----hcCcHHHHHHHHHHh
Confidence            9    778999999987653

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.35  E-value=1.5e-06  Score=79.24  Aligned_cols=73  Identities=25%  Similarity=0.353  Sum_probs=62.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      +--|+.||+.|+++.|++|++    -|.++|+.|....+||.+|+-.||.+++++|+++||-..--...|... ||++
T Consensus        37 f~elceacR~GD~d~v~~LVe----tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE----TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH----hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhh
Confidence            456899999999999999999    789999999999999999999999999999999998765555556554 4443

>PHA00729 NTP-binding motif containing protein

Probab=98.35  E-value=8.8e-07  Score=77.70  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=23.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..+++|+|+||||||++|.++++.+.
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35899999999999999999999875

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.34  E-value=1.2e-06  Score=83.82  Aligned_cols=116  Identities=24%  Similarity=0.250  Sum_probs=93.7

Q ss_pred             HHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCC--cccccCCCCcHHHHHhhccc
Q 013706            9 HVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF--IEAKANNGMTPLHLSVWYSI   86 (438)
Q Consensus         9 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~   86 (438)
                      .-|+..+++--++..-.    .|.++..++.+.+|-||+|+.-|+.++|++++++|..  +++.|..|.|+||.|+    
T Consensus       871 l~av~~~D~~klqE~h~----~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa----  942 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHL----NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAA----  942 (1004)
T ss_pred             HHHHHhccHHHHHHHHh----cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHH----
Confidence            34455554433333333    4677888899999999999999999999999999975  5778899999999998    


Q ss_pred             ccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706           87 RSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW  133 (438)
Q Consensus        87 ~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~  133 (438)
                      ..++..++.+|.+.|+...-.|..|.||- .-+...+.+++..+|..
T Consensus       943 ~~~~r~vc~~lvdagasl~ktd~kg~tp~-eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  943 CQRNRAVCQLLVDAGASLRKTDSKGKTPQ-ERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HhcchHHHHHHHhcchhheecccCCCChH-HHHHhcCCchHHHHHhh
Confidence            67788899999999999999999999998 55666778888877763

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=98.34  E-value=2.2e-06  Score=79.34  Aligned_cols=126  Identities=7%  Similarity=0.058  Sum_probs=81.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcC---CcC-CC--CEEEeecccccccccccchHHHHHHHHHc--------cCcE
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVG---ILP-TD--RVTEVQRTDLVGEFVGHTGPKTRRRIKEA--------EGGI  265 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~---~~~-~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~a--------~~~i  265 (438)
                      ...||+|+.|+||+.+|+.+++.+....   ... ..  .+..++..   +..+  .-..++.+.+..        ...|
T Consensus        19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~Kv   93 (299)
T PRK07132         19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKKI   93 (299)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCceE
Confidence            4467999999999999999999884311   000 01  12222200   1101  112344443322        3479


Q ss_pred             EEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHH
Q 013706          266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK  343 (438)
Q Consensus       266 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~  343 (438)
                      ++||++|.+..           .+.|.||..+++  ...++|+.++. + ..+   -|++++|+ .+++|++++.+++.+
T Consensus        94 vII~~~e~m~~-----------~a~NaLLK~LEEPp~~t~~il~~~~-~-~kl---l~TI~SRc-~~~~f~~l~~~~l~~  156 (299)
T PRK07132         94 LIIKNIEKTSN-----------SLLNALLKTIEEPPKDTYFLLTTKN-I-NKV---LPTIVSRC-QVFNVKEPDQQKILA  156 (299)
T ss_pred             EEEecccccCH-----------HHHHHHHHHhhCCCCCeEEEEEeCC-h-HhC---hHHHHhCe-EEEECCCCCHHHHHH
Confidence            99999998875           445899999997  44555554432 2 333   67789998 899999999999887


Q ss_pred             HHHH
Q 013706          344 ILHI  347 (438)
Q Consensus       344 il~~  347 (438)
                      .+..
T Consensus       157 ~l~~  160 (299)
T PRK07132        157 KLLS  160 (299)
T ss_pred             HHHH
Confidence            7764

>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]

Probab=98.34  E-value=2.5e-06  Score=81.30  Aligned_cols=110  Identities=21%  Similarity=0.304  Sum_probs=60.4

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC---EEEee
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR---VTEVQ  238 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~---~~~~~  238 (438)
                      -+|.|++++|+.+.-++  +.-..+.+..|+++  +..-||+|.|.||+-|+-|.+.+.+.... +...++.   =+-+.
T Consensus       342 PEIyGheDVKKaLLLlL--VGgvd~~~~dGMKI--RGdINicLmGDPGVAKSQLLkyi~rlapR-gvYTTGrGSSGVGLT  416 (721)
T KOG0482|consen  342 PEIYGHEDVKKALLLLL--VGGVDKSPGDGMKI--RGDINICLMGDPGVAKSQLLKYISRLAPR-GVYTTGRGSSGVGLT  416 (721)
T ss_pred             hhhccchHHHHHHHHHh--hCCCCCCCCCCcee--ecceeEEecCCCchhHHHHHHHHHhcCcc-cceecCCCCCccccc
Confidence            36889999998876432  21122333334433  34568999999999999999999875532 1111110   01111


Q ss_pred             cccccccccccchHHHHHHHHHccCcEEEEeCcccccCC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM  277 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~  277 (438)
                      ++-.....-||.. .-..++-.|.+||--|||+|++...
T Consensus       417 AAVmkDpvTgEM~-LEGGALVLAD~GICCIDEfDKM~e~  454 (721)
T KOG0482|consen  417 AAVMKDPVTGEMV-LEGGALVLADGGICCIDEFDKMDES  454 (721)
T ss_pred             hhhhcCCCCCeeE-eccceEEEccCceEeehhhhhhhhh
Confidence            1111111111100 0002334567899999999999764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.34  E-value=1.9e-06  Score=81.16  Aligned_cols=94  Identities=29%  Similarity=0.369  Sum_probs=78.5

Q ss_pred             cccCCCChH------HHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccC
Q 013706           36 AQNMYGETP------LHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD  108 (438)
Q Consensus        36 ~~d~~g~t~------L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d  108 (438)
                      .+|.+|.|.      ||..++.|+.+..--|+..|+++|.-+ ..|.||||.|+    +.|+..-+++|+-+|+|++..|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAA----k~Gq~~Q~ElL~vYGAD~~a~d  197 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAA----KAGQILQAELLAVYGADPGAQD  197 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHH----hccchhhhhHHhhccCCCCCCC
Confidence            345566654      899999999999888999999999865 47999999999    8899999999999999999999


Q ss_pred             CCCCccccccccCCCchhHHHHHHhc
Q 013706          109 NEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus       109 ~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                      .+|.||+ .+|-..|+.++.+-|...
T Consensus       198 ~~GmtP~-~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  198 SSGMTPV-DYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCCCcHH-HHHHhcCchHHHHHHHHH
Confidence            9999999 555556776766665543

>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]

Probab=98.33  E-value=4.5e-06  Score=79.66  Aligned_cols=238  Identities=20%  Similarity=0.229  Sum_probs=119.4

Q ss_pred             hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706          163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  242 (438)
Q Consensus       163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~  242 (438)
                      .+.|.+++|+.+.-++    ..-.++.+...+..+..-||||.|.|||-|+-+.+.+-+..         |+- +-.+.-
T Consensus       332 SIfG~~DiKkAiaClL----FgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs---------PIa-VYTSGK  397 (729)
T KOG0481|consen  332 SIFGHEDIKKAIACLL----FGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS---------PIA-VYTSGK  397 (729)
T ss_pred             hhcCchhHHHHHHHHh----hcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC---------ceE-EEecCC
Confidence            4778888888877542    11122222222333456689999999999999998886532         111 111110


Q ss_pred             cccccccchHHHH-----------HHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------------
Q 013706          243 VGEFVGHTGPKTR-----------RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------  299 (438)
Q Consensus       243 ~~~~~g~~~~~~~-----------~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------  299 (438)
                      -+.-.|-+..-++           .++-.|.|||+-|||+|++-....           -++=+.|+.            
T Consensus       398 GSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR-----------VAIHEAMEQQTISIAKAGITT  466 (729)
T KOG0481|consen  398 GSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR-----------VAIHEAMEQQTISIAKAGITT  466 (729)
T ss_pred             CcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhh-----------hHHHHHHHhhhHHHhhhccee
Confidence            0111111111110           123456889999999999976432           122222221            


Q ss_pred             ---CCEEEEEecCC--hhHH------HHhhhCcCccCCCCcceeCCCCCHHHHHHHH-HHHHhccc----cccc------
Q 013706          300 ---GKVVVIFAGYS--EPMK------RVIASNEGFCRRVTKFFHFNDFNSEELAKIL-HIKMNNQT----EDSL------  357 (438)
Q Consensus       300 ---~~v~vi~~~~~--~~~~------~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il-~~~l~~~~----~~~~------  357 (438)
                         .+--|++|.|+  -.++      .-+.--|.+++|||.++-+.+-..+++-..+ ++.+.-..    ....      
T Consensus       467 ~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~  546 (729)
T KOG0481|consen  467 TLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENE  546 (729)
T ss_pred             eecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCC
Confidence               12223333221  0011      0111137899999998888776665543333 33222111    0000      


Q ss_pred             -------------cccccccccccHHHHHHHHHHHhhHh-------------hhccccccchHHHHHHHHHHhhccccCC
Q 013706          358 -------------LYGFKLHSSCSMDAIAALIEKETTEK-------------QRREMNGGLVDPMLVNARENLDLRLSFD  411 (438)
Q Consensus       358 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~n~~~l~~~~~~a~~~~~~r~~~~  411 (438)
                                   -++.+..+.++.++-+++.++|..-.             ..-|-.+|.|..++..+...|..+++  
T Consensus       547 ~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls--  624 (729)
T KOG0481|consen  547 GEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELS--  624 (729)
T ss_pred             CcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCC--
Confidence                         02345556677777777766664110             01134455565555544444422222  


Q ss_pred             CCChhhhhhccHHHHHHHHHHHH
Q 013706          412 CLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       412 ~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                             .-.|.+|+++|++.++
T Consensus       625 -------~~ate~hV~EA~RLF~  640 (729)
T KOG0481|consen  625 -------PFATEAHVEEALRLFQ  640 (729)
T ss_pred             -------ccccHHHHHHHHHHHh
Confidence                   2356777888877765

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=98.29  E-value=5.8e-05  Score=68.90  Aligned_cols=163  Identities=12%  Similarity=0.201  Sum_probs=92.8

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE--Eeec
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT--EVQR  239 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~--~~~~  239 (438)
                      ..+.|..+..+.+.++++....            -+....+++.||.|+|||++.-..-......    +..++  .+++
T Consensus        24 ~~l~g~~~~~~~l~~~lkqt~~------------~gEsnsviiigprgsgkT~li~~~Ls~~q~~----~E~~l~v~Lng   87 (408)
T KOG2228|consen   24 INLFGVQDEQKHLSELLKQTIL------------HGESNSVIIIGPRGSGKTILIDTRLSDIQEN----GENFLLVRLNG   87 (408)
T ss_pred             cceeehHHHHHHHHHHHHHHHH------------hcCCCceEEEccCCCCceEeeHHHHhhHHhc----CCeEEEEEECc
Confidence            3456777777777777553321            1245679999999999997654432221111    11333  3332


Q ss_pred             ccc-------------------cccccccchHHHHHHHHHc-------cCcEEEE-eCcccccC-CCCCCCchhHHHHHH
Q 013706          240 TDL-------------------VGEFVGHTGPKTRRRIKEA-------EGGILFV-DEAYRLIP-MQKADDKDYGIEALE  291 (438)
Q Consensus       240 ~~~-------------------~~~~~g~~~~~~~~~~~~a-------~~~il~i-DEid~l~~-~~~~~~~~~~~~~~~  291 (438)
                      .--                   ..+-+|.....+..++..-       .+.|+|| ||+|-+++ .+|        ..+.
T Consensus        88 ~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQ--------tllY  159 (408)
T KOG2228|consen   88 ELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQ--------TLLY  159 (408)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhh--------HHHH
Confidence            210                   0122333333444443321       1246666 79999986 444        3445


Q ss_pred             HHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcc-eeC-CCCCHHHHHHHHHHHHh
Q 013706          292 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF-FHF-NDFNSEELAKILHIKMN  350 (438)
Q Consensus       292 ~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~-i~~-~~~~~~e~~~il~~~l~  350 (438)
                      .|...-+.  ..+.+|+.|++-+....+  -....+||... |.+ |+..-++...+++..+.
T Consensus       160 nlfDisqs~r~Piciig~Ttrld~lE~L--EKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~  220 (408)
T KOG2228|consen  160 NLFDISQSARAPICIIGVTTRLDILELL--EKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS  220 (408)
T ss_pred             HHHHHHhhcCCCeEEEEeeccccHHHHH--HHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence            55555453  568888888776665444  33567799554 554 44556888888888774

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.27  E-value=1.1e-06  Score=84.33  Aligned_cols=62  Identities=26%  Similarity=0.308  Sum_probs=58.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCc
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI   67 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   67 (438)
                      .+|.|+||+||..|++.+.++|+.    .|+++..+|.+|+|+|.||-+.|..+|+.+|+++|+..
T Consensus       659 ~~grt~LHLa~~~gnVvl~QLLiW----yg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  659 GDGRTALHLAARKGNVVLAQLLIW----YGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             CCCcchhhhhhhhcchhHHHHHHH----hCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            378999999999999999999997    68999999999999999999999999999999999854

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.25  E-value=3.2e-06  Score=66.08  Aligned_cols=82  Identities=15%  Similarity=0.157  Sum_probs=48.7

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHcC-CcCCCCEEEeec-ccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCC
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMVG-ILPTDRVTEVQR-TDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK  279 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~~-~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~  279 (438)
                      |.|+||||+|||++|+.|++.+.... ......+...++ .++.+.|.              ...++++||+....... 
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~--------------~q~vvi~DD~~~~~~~~-   65 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ--------------GQPVVIIDDFGQDNDGY-   65 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC--------------CCcEEEEeecCcccccc-
Confidence            57999999999999999999886422 111223322222 22322222              33799999997765431 


Q ss_pred             CCCchhHHHHHHHHHhhccCCCEEE
Q 013706          280 ADDKDYGIEALEEIMSVMDGGKVVV  304 (438)
Q Consensus       280 ~~~~~~~~~~~~~ll~~~~~~~v~v  304 (438)
                            .......+++.++.....+
T Consensus        66 ------~~~~~~~l~~l~s~~~~~~   84 (107)
T PF00910_consen   66 ------NYSDESELIRLISSNPFQP   84 (107)
T ss_pred             ------chHHHHHHHHHHhcCCccc
Confidence                  1123466777776644333

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.25  E-value=1.5e-06  Score=83.09  Aligned_cols=90  Identities=28%  Similarity=0.301  Sum_probs=80.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW   83 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   83 (438)
                      -.+.||+|+.-|+-++|+++|+|.  ....++..|..|.|+||-|+..++..+..+|++.|+.+..+|..|.||-.-|- 
T Consensus       899 ~~sllh~a~~tg~~eivkyildh~--p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraq-  975 (1004)
T KOG0782|consen  899 HCSLLHYAAKTGNGEIVKYILDHG--PSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQ-  975 (1004)
T ss_pred             hhhHHHHHHhcCChHHHHHHHhcC--CHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHH-
Confidence            468899999999999999999973  34557788899999999999999999999999999999999999999998887 


Q ss_pred             cccccCcHHHHHHHHh
Q 013706           84 YSIRSEDYATVKTLLE   99 (438)
Q Consensus        84 ~~~~~~~~~~~~~Ll~   99 (438)
                         ..|..+++.+|-.
T Consensus       976 ---qa~d~dlaayle~  988 (1004)
T KOG0782|consen  976 ---QAGDPDLAAYLES  988 (1004)
T ss_pred             ---hcCCchHHHHHhh
Confidence               7889999888753

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.22  E-value=3.7e-05  Score=62.71  Aligned_cols=31  Identities=26%  Similarity=0.357  Sum_probs=26.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      .+..+.++||||+|||+++..++..+...++
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~   34 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY   34 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCc
Confidence            4567999999999999999999999976543

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=98.17  E-value=6.3e-06  Score=78.49  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=61.9

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc-------cccccchHHHHHHHH-HccC-cEE
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-------EFVGHTGPKTRRRIK-EAEG-GIL  266 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~-~a~~-~il  266 (438)
                      ...++|+.||||+|+|||+|.-.+...+.....    .  .++.-.++.       ++.|... .+..+.+ -+.+ -+|
T Consensus        59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----~--R~HFh~Fm~~vh~~l~~~~~~~~-~l~~va~~l~~~~~lL  131 (362)
T PF03969_consen   59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----R--RVHFHEFMLDVHSRLHQLRGQDD-PLPQVADELAKESRLL  131 (362)
T ss_pred             CCCCceEEEECCCCCchhHHHHHHHHhCCcccc----c--cccccHHHHHHHHHHHHHhCCCc-cHHHHHHHHHhcCCEE
Confidence            457899999999999999999999876632111    1  111112211       1122211 1222222 2344 499


Q ss_pred             EEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHH
Q 013706          267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK  314 (438)
Q Consensus       267 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~  314 (438)
                      .|||++---.        ...-++..|+..+=...+++|+|+|..|.+
T Consensus       132 cfDEF~V~Di--------aDAmil~rLf~~l~~~gvvlVaTSN~~P~~  171 (362)
T PF03969_consen  132 CFDEFQVTDI--------ADAMILKRLFEALFKRGVVLVATSNRPPED  171 (362)
T ss_pred             EEeeeeccch--------hHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence            9999964321        123566777777766778888888766654

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.16  E-value=4.7e-05  Score=73.75  Aligned_cols=146  Identities=14%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchH------HHHHHHHHc------------
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP------KTRRRIKEA------------  261 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~a------------  261 (438)
                      .-+||+||+|||||+..+.++++++..-+-...|+-......+.....+.+..      ........+            
T Consensus       111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~  190 (634)
T KOG1970|consen  111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD  190 (634)
T ss_pred             eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence            34779999999999999999999975222222222111122222222222111      111111111            


Q ss_pred             ---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc-C--CCEEEEEecCCh-h---HHHHhhhCcCccCCCCcce
Q 013706          262 ---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-G--GKVVVIFAGYSE-P---MKRVIASNEGFCRRVTKFF  331 (438)
Q Consensus       262 ---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~-~--~~v~vi~~~~~~-~---~~~~~~~~p~l~~R~~~~i  331 (438)
                         .+.+|||||+=..+...       ..+.+...|+.+- .  -.+++|++.... .   -++..-.+--..-|+ ..|
T Consensus       191 ~~~~~~liLveDLPn~~~~d-------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~I  262 (634)
T KOG1970|consen  191 LRTDKKLILVEDLPNQFYRD-------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNI  262 (634)
T ss_pred             cccCceEEEeeccchhhhhh-------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceE
Confidence               12589999985554321       1233333333332 2  234444443211 0   011110010112255 688


Q ss_pred             eCCCCCHHHHHHHHHHHHhccc
Q 013706          332 HFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       332 ~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      .|.+..+.-+...|++++..+.
T Consensus       263 sFNPIa~T~MKK~L~ric~~e~  284 (634)
T KOG1970|consen  263 SFNPIAPTIMKKFLKRICRIEA  284 (634)
T ss_pred             eecCCcHHHHHHHHHHHHHHhc
Confidence            9999999888888888887764

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=98.14  E-value=6e-06  Score=86.18  Aligned_cols=146  Identities=14%  Similarity=0.161  Sum_probs=92.6

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccc-----cc--chHHHHHHH-------HHc-cCcEE
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV-----GH--TGPKTRRRI-------KEA-EGGIL  266 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-----g~--~~~~~~~~~-------~~a-~~~il  266 (438)
                      ++++||||+|||+.|.+.|++++.       .+++.++++.-+++.     |+  ....+...+       ..+ ...||
T Consensus       360 ~l~~G~pGigKT~~~h~~~k~~g~-------~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vi  432 (871)
T KOG1968|consen  360 LLLSGPPGIGKTTAAHKAAKELGF-------KVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLI  432 (871)
T ss_pred             HHhcCCCCCCchhhHhhhhhhccc-------ceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEE
Confidence            689999999999999999999877       788888886554432     22  122232333       111 12599


Q ss_pred             EEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEE-ecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHH
Q 013706          267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL  345 (438)
Q Consensus       267 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~-~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il  345 (438)
                      ++||+|-+....        +..+.++...+....+-+|+ ++..+..      ......|-+..++|+.|+.+.+..-+
T Consensus       433 l~devD~~~~~d--------Rg~v~~l~~l~~ks~~Piv~~cndr~~p------~sr~~~~~~~~l~f~kP~~~~i~~ri  498 (871)
T KOG1968|consen  433 LMDEVDGMFGED--------RGGVSKLSSLCKKSSRPLVCTCNDRNLP------KSRALSRACSDLRFSKPSSELIRSRI  498 (871)
T ss_pred             EEeccccccchh--------hhhHHHHHHHHHhccCCeEEEecCCCCc------cccchhhhcceeeecCCcHHHHHhhh
Confidence            999999887511        12334454554443333333 3222211      11123354578999999999999988


Q ss_pred             HHHHhccccccccccccccccccHHHHHHHHHHH
Q 013706          346 HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE  379 (438)
Q Consensus       346 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (438)
                      ...+..+.           ..++...+..+...+
T Consensus       499 ~si~~se~-----------~ki~~~~l~~~s~~~  521 (871)
T KOG1968|consen  499 MSICKSEG-----------IKISDDVLEEISKLS  521 (871)
T ss_pred             hhhhcccc-----------eecCcHHHHHHHHhc
Confidence            88887653           235677888888766

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.13  E-value=8.1e-06  Score=67.69  Aligned_cols=71  Identities=30%  Similarity=0.456  Sum_probs=62.7

Q ss_pred             CcccccccCCCChHHHHHHHcCCHHHHHHHHHCC-CCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCc
Q 013706           31 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS  105 (438)
Q Consensus        31 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~  105 (438)
                      +.++|++|..|||||+.|++.|..+.+.+|+.+| +.+...|..|.+++.+|-    .+|..+++..|.+.-.+..
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlae----k~g~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAE----KGGAQAFVHSLFENDRETS   73 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHH----hcChHHHHHHHHHHhccCC
Confidence            4578999999999999999999999999999999 889999999999999998    8899999999887644433

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.12  E-value=4.6e-05  Score=71.11  Aligned_cols=135  Identities=16%  Similarity=0.250  Sum_probs=69.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc----cccc---ccccc---------hHHHHHHHHH-
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD----LVGE---FVGHT---------GPKTRRRIKE-  260 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~~~---~~g~~---------~~~~~~~~~~-  260 (438)
                      ....+.++|++|+|||++|+.+++......-.....++.+....    +...   .++..         .......+.+ 
T Consensus        18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~   97 (287)
T PF00931_consen   18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL   97 (287)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            45668899999999999999999875432222112233333221    1110   11111         1122222222 


Q ss_pred             --ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCC
Q 013706          261 --AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF  336 (438)
Q Consensus       261 --a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~  336 (438)
                        .+.++|+||+++...             .+..+...+..  ....+|.||....+..      ..... ...++++.+
T Consensus        98 L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~kilvTTR~~~v~~------~~~~~-~~~~~l~~L  157 (287)
T PF00931_consen   98 LKDKRCLLVLDDVWDEE-------------DLEELREPLPSFSSGSKILVTTRDRSVAG------SLGGT-DKVIELEPL  157 (287)
T ss_dssp             HCCTSEEEEEEEE-SHH-------------HH-------HCHHSS-EEEEEESCGGGGT------THHSC-EEEEECSS-
T ss_pred             hccccceeeeeeecccc-------------ccccccccccccccccccccccccccccc------ccccc-ccccccccc
Confidence              246899999986543             12223333321  2345555655443321      11111 468999999


Q ss_pred             CHHHHHHHHHHHHhcc
Q 013706          337 NSEELAKILHIKMNNQ  352 (438)
Q Consensus       337 ~~~e~~~il~~~l~~~  352 (438)
                      +.++..+++.......
T Consensus       158 ~~~ea~~L~~~~~~~~  173 (287)
T PF00931_consen  158 SEEEALELFKKRAGRK  173 (287)
T ss_dssp             -HHHHHHHHHHHHTSH
T ss_pred             cccccccccccccccc
Confidence            9999999999887654

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.12  E-value=1.6e-05  Score=69.06  Aligned_cols=24  Identities=33%  Similarity=0.299  Sum_probs=20.6

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++++||||||||+++..++.....
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~   25 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLA   25 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999988776543

A related protein is found in archaea.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.12  E-value=2.8e-06  Score=87.96  Aligned_cols=75  Identities=39%  Similarity=0.471  Sum_probs=40.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccccc
Q 013706           40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL  118 (438)
Q Consensus        40 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~  118 (438)
                      .|.|+||.|+..|..-.+++|+++|+++|..|..|.+|||.+.    ..|+...+..|+.+|++++..+..|.+|++++
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~----~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHAT----ASGHTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhh----hhcccchhhhhccccccccccCccCcchhhHH
Confidence            3455555555555555555555555555555555555555554    45555555555555555555555555555443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.11  E-value=8.5e-06  Score=74.49  Aligned_cols=84  Identities=25%  Similarity=0.267  Sum_probs=73.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCC
Q 013706           43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP  122 (438)
Q Consensus        43 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~  122 (438)
                      --|..||+.|..+.++.|++.|.++|..|....+||.+|+    ..||.+++++|++.||-..--..+|..++ +.+-  
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAs----LcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaL--  110 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLAS----LCGHEDVVKLLLENGAICSRDTFDGDRCH-YGAL--  110 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHH----HcCcHHHHHHHHHcCCcccccccCcchhh-hhhh--
Confidence            3589999999999999999999999999999999999999    78999999999999999988888898887 6554  


Q ss_pred             CchhHHHHHHhc
Q 013706          123 GSAKLRELLLWH  134 (438)
Q Consensus       123 ~~~~~~~lL~~~  134 (438)
                       +..+.+.|+++
T Consensus       111 -nd~IR~mllsy  121 (516)
T KOG0511|consen  111 -NDRIRRMLLSY  121 (516)
T ss_pred             -hHHHHHHHHHH
Confidence             34566666654

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=98.09  E-value=1.1e-05  Score=70.58  Aligned_cols=100  Identities=22%  Similarity=0.291  Sum_probs=57.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc----ccccccchHHHHHHHHH------------ccC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGHTGPKTRRRIKE------------AEG  263 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~------------a~~  263 (438)
                      ...++.||||||||++.+.+.+.+...+.    .++-+.++.-.    .+..|.....+.+.+..            ...
T Consensus        19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~----~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~   94 (196)
T PF13604_consen   19 RVSVLQGPAGTGKTTLLKALAEALEAAGK----RVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKK   94 (196)
T ss_dssp             SEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TST
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHHHhCCC----eEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcc
Confidence            45778999999999999999988876432    55555554311    11112212222222211            223


Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK  314 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~  314 (438)
                      .+|+|||+..+..           ..+..|+..+......+|+.+.+.-+.
T Consensus        95 ~vliVDEasmv~~-----------~~~~~ll~~~~~~~~klilvGD~~QL~  134 (196)
T PF13604_consen   95 DVLIVDEASMVDS-----------RQLARLLRLAKKSGAKLILVGDPNQLP  134 (196)
T ss_dssp             SEEEESSGGG-BH-----------HHHHHHHHHS-T-T-EEEEEE-TTSHH
T ss_pred             cEEEEecccccCH-----------HHHHHHHHHHHhcCCEEEEECCcchhc
Confidence            7999999977764           456778888877555566665555443

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=98.09  E-value=0.00017  Score=67.03  Aligned_cols=187  Identities=18%  Similarity=0.185  Sum_probs=106.4

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc----------c-----cccccc----hHHHH--
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----------G-----EFVGHT----GPKTR--  255 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----------~-----~~~g~~----~~~~~--  255 (438)
                      ..|.++.+||..|||||.+.|.+-+.++.       +.+.+++-+..          .     .+-|..    ..++.  
T Consensus        28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-------~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~  100 (438)
T KOG2543|consen   28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNL-------ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDF  100 (438)
T ss_pred             ccceeEEEeccCCCchhHHHHHHHhhcCC-------cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHH
Confidence            35777899999999999999999887754       44555543311          1     111110    01111  


Q ss_pred             -HHHHH---c----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh---hccCCCEEEEEecCChhHHHHhhhCcCcc
Q 013706          256 -RRIKE---A----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS---VMDGGKVVVIFAGYSEPMKRVIASNEGFC  324 (438)
Q Consensus       256 -~~~~~---a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~---~~~~~~v~vi~~~~~~~~~~~~~~~p~l~  324 (438)
                       ..|++   +    +.-.|++|.+|.+-..        ....++.|++   .++...++++.....-+....  .+   .
T Consensus       101 i~~l~q~~~~t~~d~~~~liLDnad~lrD~--------~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~--~n---~  167 (438)
T KOG2543|consen  101 IYLLVQWPAATNRDQKVFLILDNADALRDM--------DAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL--IN---T  167 (438)
T ss_pred             HHHHHhhHHhhccCceEEEEEcCHHhhhcc--------chHHHHHHHHHHHHhCCCceEEEEeccccHHHhh--cc---c
Confidence             22333   1    2357888999999632        2234444444   444566666665333222211  01   1


Q ss_pred             CCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          325 RRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       325 ~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      +-+ ...+.||.|+.+|..+|+.+---.              ....+..+..+.-.+..=...-....+++.++..+..+
T Consensus       168 g~~~i~~l~fP~Ys~~e~~~Il~~~~p~--------------~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpk  233 (438)
T KOG2543|consen  168 GTLEIVVLHFPQYSVEETQVILSRDNPG--------------KRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAWPK  233 (438)
T ss_pred             CCCCceEEecCCCCHHHHHHHHhcCCcc--------------ccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            222 468999999999999999753221              11233333333322211111123567888888888889


Q ss_pred             hhccccCCCCChhh
Q 013706          404 LDLRLSFDCLDTDE  417 (438)
Q Consensus       404 ~~~r~~~~~~~~~~  417 (438)
                      ..+++.++.+++.+
T Consensus       234 y~epi~~~~i~~~d  247 (438)
T KOG2543|consen  234 YCEPITKGKIDPTD  247 (438)
T ss_pred             hccccccCCCChhH
Confidence            88888877765443

>PRK08118 topology modulation protein; Reviewed

Probab=98.07  E-value=3.7e-05  Score=65.30  Aligned_cols=26  Identities=35%  Similarity=0.669  Sum_probs=23.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +.|++.||||+||||+|+.|++.++.
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~   27 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNI   27 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46899999999999999999998765

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.06  E-value=6.1e-06  Score=78.80  Aligned_cols=86  Identities=31%  Similarity=0.419  Sum_probs=67.9

Q ss_pred             hHHHHHHHcCCHHHHHHHH--HCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccccccc
Q 013706           43 TPLHMAAKNGCNEAAKLLL--AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN  120 (438)
Q Consensus        43 t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~  120 (438)
                      -|||+++.....+-...++  +.+..++..|..|.||||+|+    .-|+...++.|+.+|+++..+|+.||+|||-+.+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV----~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAV----RLGHVEAARILLSAGADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHH----HhcCHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence            4699999887766554433  345567889999999999999    7899999999999999999999999999966666


Q ss_pred             CCCchhHHHHHH
Q 013706          121 GPGSAKLRELLL  132 (438)
Q Consensus       121 ~~~~~~~~~lL~  132 (438)
                      .++...+.++|.
T Consensus        98 ~g~~q~i~~vlr  109 (560)
T KOG0522|consen   98 TGNEQIITEVLR  109 (560)
T ss_pred             cCCHHHHHHHHH
Confidence            554444444444

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.06  E-value=0.00018  Score=70.17  Aligned_cols=30  Identities=33%  Similarity=0.566  Sum_probs=26.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      +|..++|+||||+|||+++..+|..+...+
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g  123 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG  123 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence            567789999999999999999999886544

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=98.03  E-value=0.00025  Score=67.47  Aligned_cols=82  Identities=20%  Similarity=0.260  Sum_probs=58.9

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCc----------C-ccCCCCccee
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNE----------G-FCRRVTKFFH  332 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p----------~-l~~R~~~~i~  332 (438)
                      -|+||||+|++.+       +...+++..+-..++-.++++|.+..++.+...+...-          . |..-|+..+.
T Consensus       174 iViiIDdLDR~~~-------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~  246 (325)
T PF07693_consen  174 IVIIIDDLDRCSP-------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFS  246 (325)
T ss_pred             EEEEEcchhcCCc-------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEE
Confidence            6999999999975       34456666666667778888888877666665443321          1 2334588899


Q ss_pred             CCCCCHHHHHHHHHHHHhcc
Q 013706          333 FNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       333 ~~~~~~~e~~~il~~~l~~~  352 (438)
                      +|+++..+...++...+.+.
T Consensus       247 lP~~~~~~~~~~~~~~~~~~  266 (325)
T PF07693_consen  247 LPPPSPSDLERYLNELLESL  266 (325)
T ss_pred             eCCCCHHHHHHHHHHHHHHh
Confidence            99999999998888876554

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.02  E-value=1.8e-05  Score=67.63  Aligned_cols=36  Identities=28%  Similarity=0.584  Sum_probs=28.2

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE  245 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                      .++|.||||+||||+|+.|++.+         ++..++..++...
T Consensus         2 riiilG~pGaGK~T~A~~La~~~---------~i~hlstgd~~r~   37 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL---------GLPHLDTGDILRA   37 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh---------CCcEEcHhHHhHh
Confidence            58999999999999999999974         4556665554433

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=98.01  E-value=2.9e-05  Score=66.99  Aligned_cols=111  Identities=21%  Similarity=0.291  Sum_probs=66.1

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcCC--cCCCCEEEeec-ccccccccccchHH----------------HHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQR-TDLVGEFVGHTGPK----------------TRRR  257 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~~~----------------~~~~  257 (438)
                      ..+.+.|+.||||||||++.|-||+.+.. ++  +....+..++. +++.+-..|...-.                +-.+
T Consensus       135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~-g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmma  213 (308)
T COG3854         135 NGWLNTLIIGPPQVGKTTLLRDIARLLSD-GINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMA  213 (308)
T ss_pred             cCceeeEEecCCCCChHHHHHHHHHHhhc-cccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHH
Confidence            36788999999999999999999997753 21  11123333333 34444344432111                1123


Q ss_pred             HHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCc
Q 013706          258 IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGF  323 (438)
Q Consensus       258 ~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l  323 (438)
                      ++...+-|+++|||.....             ..++++.+..+ |-+|.+..-+.++.+.. .|+|
T Consensus       214 Irsm~PEViIvDEIGt~~d-------------~~A~~ta~~~G-Vkli~TaHG~~iedl~k-rp~l  264 (308)
T COG3854         214 IRSMSPEVIIVDEIGTEED-------------ALAILTALHAG-VKLITTAHGNGIEDLIK-RPTL  264 (308)
T ss_pred             HHhcCCcEEEEeccccHHH-------------HHHHHHHHhcC-cEEEEeeccccHHHhhc-ChhH
Confidence            4455678999999965431             13455555544 67777777666665543 3444

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.99  E-value=0.00012  Score=64.41  Aligned_cols=177  Identities=19%  Similarity=0.202  Sum_probs=97.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc-----ccccccc--c--hHHHH-----------HHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL-----VGEFVGH--T--GPKTR-----------RRI  258 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~~~g~--~--~~~~~-----------~~~  258 (438)
                      ..-+.++|+.|+|||++.|++...+....+    ..+.++...+     ...++-+  +  ...+.           ..+
T Consensus        51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~----~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~  126 (269)
T COG3267          51 QGILAVTGEVGSGKTVLRRALLASLNEDQV----AVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV  126 (269)
T ss_pred             CceEEEEecCCCchhHHHHHHHHhcCCCce----EEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence            345779999999999999977665542111    2223333221     1111111  1  11111           122


Q ss_pred             HHcc-CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCc---CccCCCCccee
Q 013706          259 KEAE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNE---GFCRRVTKFFH  332 (438)
Q Consensus       259 ~~a~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p---~l~~R~~~~i~  332 (438)
                      .+.+ +-++++||++.+..+.-        +.+.-|...-++  +..-++..+.+.-...+  ..|   .+..|++..|+
T Consensus       127 ~~g~r~v~l~vdEah~L~~~~l--------e~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~l--r~~~l~e~~~R~~ir~~  196 (269)
T COG3267         127 KKGKRPVVLMVDEAHDLNDSAL--------EALRLLTNLEEDSSKLLSIVLIGQPKLRPRL--RLPVLRELEQRIDIRIE  196 (269)
T ss_pred             HhCCCCeEEeehhHhhhChhHH--------HHHHHHHhhcccccCceeeeecCCcccchhh--chHHHHhhhheEEEEEe
Confidence            2223 37999999999875321        333333333322  33445555544332211  123   33459977799


Q ss_pred             CCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          333 FNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       333 ~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ++|++.++....++..++.-..        -.+-++.+++..+....-       |--+.+.+++..|...+
T Consensus       197 l~P~~~~~t~~yl~~~Le~a~~--------~~~l~~~~a~~~i~~~sq-------g~P~lin~~~~~Al~~a  253 (269)
T COG3267         197 LPPLTEAETGLYLRHRLEGAGL--------PEPLFSDDALLLIHEASQ-------GIPRLINNLATLALDAA  253 (269)
T ss_pred             cCCcChHHHHHHHHHHHhccCC--------CcccCChhHHHHHHHHhc-------cchHHHHHHHHHHHHHH
Confidence            9999999999999999987532        123355666666655442       22355666666665544

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.99  E-value=2.1e-05  Score=69.28  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=21.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      .+..+||||+||+|||++|+.++.
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCC
Confidence            456799999999999999999963

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]

Probab=97.98  E-value=4.4e-05  Score=74.81  Aligned_cols=106  Identities=19%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC---C----E
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD---R----V  234 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~---~----~  234 (438)
                      -.+.|+..+|..+.-.+-    .-..+..+..-..+...|+||.|.|||||+-+.|.+++.... .++.++   .    .
T Consensus       449 PsIyGh~~VK~AvAlaLf----GGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R-AV~tTGqGASavGLT  523 (854)
T KOG0477|consen  449 PSIYGHEDVKRAVALALF----GGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR-AVFTTGQGASAVGLT  523 (854)
T ss_pred             chhhchHHHHHHHHHHHh----cCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc-eeEeccCCcccccee
Confidence            356788877776653211    000000011111234568999999999999999999886532 111110   0    0


Q ss_pred             EEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCC
Q 013706          235 TEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM  277 (438)
Q Consensus       235 ~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~  277 (438)
                      ..+...-+..+|.=|     ..++-.|.+||-+|||+|++...
T Consensus       524 a~v~KdPvtrEWTLE-----aGALVLADkGvClIDEFDKMndq  561 (854)
T KOG0477|consen  524 AYVRKDPVTREWTLE-----AGALVLADKGVCLIDEFDKMNDQ  561 (854)
T ss_pred             EEEeeCCccceeeec-----cCeEEEccCceEEeehhhhhccc
Confidence            011111112223211     12345577899999999999764

>PRK13695 putative NTPase; Provisional

Probab=97.96  E-value=0.00014  Score=62.39  Aligned_cols=25  Identities=32%  Similarity=0.535  Sum_probs=22.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++|.|+||+|||++++.++..+..
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~   26 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE   26 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999887753

>PRK10536 hypothetical protein; Provisional

Probab=97.95  E-value=5.3e-05  Score=67.74  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=21.4

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..+++.||+|||||++|.+++...
T Consensus        75 ~lV~i~G~aGTGKT~La~a~a~~~   98 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAEA   98 (262)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999999999853

>PRK04296 thymidine kinase; Provisional

Probab=97.94  E-value=2.8e-05  Score=67.60  Aligned_cols=26  Identities=12%  Similarity=-0.114  Sum_probs=21.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      -.+++||||+|||+++..++..+...
T Consensus         4 i~litG~~GsGKTT~~l~~~~~~~~~   29 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAYNYEER   29 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHc
Confidence            36889999999999999998877443

>PHA02624 large T antigen; Provisional

Probab=97.92  E-value=1.7e-05  Score=78.72  Aligned_cols=113  Identities=18%  Similarity=0.144  Sum_probs=64.8

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc-cccccccchHHHHHHHHHccCcEEEEeCcccccCCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL-VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ  278 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~  278 (438)
                      ..++|+||||||||+++.+|.+.++.       ..+.++.+.- ..-|.|          -.+...+.+||++-.-....
T Consensus       432 ~~il~~GPpnTGKTtf~~sLl~~L~G-------~vlsVNsPt~ks~FwL~----------pl~D~~~~l~dD~t~~~~~~  494 (647)
T PHA02624        432 RYWLFKGPVNSGKTTLAAALLDLCGG-------KSLNVNCPPDKLNFELG----------CAIDQFMVVFEDVKGQPADN  494 (647)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC-------eEEEeeCCcchhHHHhh----------hhhhceEEEeeecccccccc
Confidence            36899999999999999999998843       4445553321 111221          22345788999985443311


Q ss_pred             CCCCchhHHHHHHHHHhhccCC-CE---------------EEEEecCChhHHHHhhhCcCccCCCCcceeCCC
Q 013706          279 KADDKDYGIEALEEIMSVMDGG-KV---------------VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND  335 (438)
Q Consensus       279 ~~~~~~~~~~~~~~ll~~~~~~-~v---------------~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~  335 (438)
                      ..-++..+-.-+.-|-..+|++ .|               -.|.|+|.-.+      +..+.-||..++.|..
T Consensus       495 ~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney~i------P~T~~~Rf~~~~~F~~  561 (647)
T PHA02624        495 KDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEYLI------PQTVKARFAKVLDFKP  561 (647)
T ss_pred             ccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCccc------chhHHHHHHHhccccc
Confidence            1001111112235666777775 22               34445443332      4556669988888854

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.92  E-value=1e-05  Score=83.87  Aligned_cols=78  Identities=32%  Similarity=0.436  Sum_probs=73.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      +.|.|+||.|+..|..-.+++|++    .|+++|..|..|+||||.+...|+...+..|+++|++.++.+..|.+||++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence            468999999999999999999999    7889999999999999999999999999999999999999999999999999


Q ss_pred             hh
Q 013706           82 VW   83 (438)
Q Consensus        82 ~~   83 (438)
                      ..
T Consensus       730 ~~  731 (785)
T KOG0521|consen  730 ME  731 (785)
T ss_pred             hh
Confidence            73

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.91  E-value=2.8e-05  Score=65.90  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=21.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +++|+|+||+||||+.+.+.+.+..
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~   25 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKK   25 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhc
Confidence            5899999999999999999999854

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK07261 topology modulation protein; Provisional

Probab=97.87  E-value=4.7e-05  Score=64.95  Aligned_cols=102  Identities=17%  Similarity=0.235  Sum_probs=60.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA  280 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~  280 (438)
                      .+++.|+||+||||+|+.++..++.       +.+..+.-.....|                                + 
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~-------~~i~~D~~~~~~~~--------------------------------~-   41 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNC-------PVLHLDTLHFQPNW--------------------------------Q-   41 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC-------CeEecCCEEecccc--------------------------------c-
Confidence            4889999999999999999986643       44333211100000                                0 


Q ss_pred             CCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhc
Q 013706          281 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN  351 (438)
Q Consensus       281 ~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~  351 (438)
                       ... ..+.+..+...+.++. .||=+++....      .+....+++.+|.+..|...-+..++++.+..
T Consensus        42 -~~~-~~~~~~~~~~~~~~~~-wIidg~~~~~~------~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~  103 (171)
T PRK07261         42 -ERD-DDDMIADISNFLLKHD-WIIDGNYSWCL------YEERMQEADQIIFLNFSRFNCLYRAFKRYLKY  103 (171)
T ss_pred             -cCC-HHHHHHHHHHHHhCCC-EEEcCcchhhh------HHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence             000 0122333344455555 44444443322      12234477889999999888899999988863

>PF14516 AAA_35: AAA-like domain

Probab=97.86  E-value=0.00085  Score=63.72  Aligned_cols=140  Identities=19%  Similarity=0.194  Sum_probs=81.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----------c--------ccc----------
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----------F--------VGH----------  249 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----------~--------~g~----------  249 (438)
                      ++..+.+.||..+|||++...+.+.+...++    ..+.++...+-..          +        ++-          
T Consensus        30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~----~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~  105 (331)
T PF14516_consen   30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGY----RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDE  105 (331)
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHHHHHCCC----EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence            4567889999999999999999888866544    3444444332110          0        000          


Q ss_pred             ---chHHHHHHHHH------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-------CCEEEEEecCChhH
Q 013706          250 ---TGPKTRRRIKE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAGYSEPM  313 (438)
Q Consensus       250 ---~~~~~~~~~~~------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------~~v~vi~~~~~~~~  313 (438)
                         ........|++      .++-||||||+|.+....     ....+.+..|-...+.       .++.+|++..+...
T Consensus       106 ~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~  180 (331)
T PF14516_consen  106 EIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY  180 (331)
T ss_pred             hcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence               11111222322      145799999999998632     2223444444444332       34666666654433


Q ss_pred             HHHhhh-CcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706          314 KRVIAS-NEGFCRRVTKFFHFNDFNSEELAKILHIKM  349 (438)
Q Consensus       314 ~~~~~~-~p~l~~R~~~~i~~~~~~~~e~~~il~~~l  349 (438)
                      .. ... ..++  .+...|++++++.+|...+++.+-
T Consensus       181 ~~-~~~~~SPF--NIg~~i~L~~Ft~~ev~~L~~~~~  214 (331)
T PF14516_consen  181 II-LDINQSPF--NIGQPIELPDFTPEEVQELAQRYG  214 (331)
T ss_pred             cc-cCCCCCCc--ccccceeCCCCCHHHHHHHHHhhh
Confidence            21 111 1223  446789999999999999887653

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=97.86  E-value=5.5e-05  Score=72.18  Aligned_cols=82  Identities=21%  Similarity=0.263  Sum_probs=52.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH-HHHcCCcCCCCEEEeecccccccccccchHHHHHHHH-HccCcEEEEeCccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL-LYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLI  275 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~il~iDEid~l~  275 (438)
                      ...|+++.||||||||.+|.+++.. ....|       -..+.+.++..    ...   +.+. -++.-+|+|||+..+.
T Consensus       208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-------~f~T~a~Lf~~----L~~---~~lg~v~~~DlLI~DEvgylp  273 (449)
T TIGR02688       208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG-------GTITVAKLFYN----IST---RQIGLVGRWDVVAFDEVATLK  273 (449)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-------CcCcHHHHHHH----HHH---HHHhhhccCCEEEEEcCCCCc
Confidence            5679999999999999999999876 23222       11222333222    111   1222 2355899999998876


Q ss_pred             CCCCCCCchhHHHHHHHHHhhccCC
Q 013706          276 PMQKADDKDYGIEALEEIMSVMDGG  300 (438)
Q Consensus       276 ~~~~~~~~~~~~~~~~~ll~~~~~~  300 (438)
                      -..+       .+.++.|...|+++
T Consensus       274 ~~~~-------~~~v~imK~yMesg  291 (449)
T TIGR02688       274 FAKP-------KELIGILKNYMESG  291 (449)
T ss_pred             CCch-------HHHHHHHHHHHHhC
Confidence            5433       35678888888763

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>PLN03210 Resistant to P

Probab=97.85  E-value=0.00024  Score=78.83  Aligned_cols=52  Identities=21%  Similarity=0.355  Sum_probs=37.9

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+++++|.+...+++..++.              .......-+-++||+|+||||+|+++++.+..
T Consensus       182 ~~~~~vG~~~~l~~l~~lL~--------------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~  233 (1153)
T PLN03210        182 DFEDFVGIEDHIAKMSSLLH--------------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR  233 (1153)
T ss_pred             ccccccchHHHHHHHHHHHc--------------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence            35678888877777776532              11224456779999999999999999887643

syringae 6; Provisional

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=97.85  E-value=2.5e-05  Score=69.69  Aligned_cols=65  Identities=29%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc--cCcEEEEeCcccccC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIP  276 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~  276 (438)
                      ..+-.++||+|||||.+++.+|+.++.       .++.+++++-.+.      ..+.++|.-+  .|+-+.+||++++..
T Consensus        32 ~~~~~~~GpagtGKtetik~La~~lG~-------~~~vfnc~~~~~~------~~l~ril~G~~~~GaW~cfdefnrl~~   98 (231)
T PF12774_consen   32 NLGGALSGPAGTGKTETIKDLARALGR-------FVVVFNCSEQMDY------QSLSRILKGLAQSGAWLCFDEFNRLSE   98 (231)
T ss_dssp             TTEEEEESSTTSSHHHHHHHHHHCTT---------EEEEETTSSS-H------HHHHHHHHHHHHHT-EEEEETCCCSSH
T ss_pred             CCCCCCcCCCCCCchhHHHHHHHHhCC-------eEEEecccccccH------HHHHHHHHHHhhcCchhhhhhhhhhhH
Confidence            356678999999999999999998887       8888998875432      3445555432  579999999999974

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=97.84  E-value=0.00016  Score=69.45  Aligned_cols=147  Identities=20%  Similarity=0.163  Sum_probs=72.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHH--HHcCCcCCCCEEEeecccc--cccccccc---------hHHHHHHHHHcc-----
Q 013706          201 HMAFLGNPGTGKTMVARILGRLL--YMVGILPTDRVTEVQRTDL--VGEFVGHT---------GPKTRRRIKEAE-----  262 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l--~~~~~~~~~~~~~~~~~~~--~~~~~g~~---------~~~~~~~~~~a~-----  262 (438)
                      -+++.|.||||||.+|-.+++.+  ...+  ....++..+.+..  +...+...         .......+....     
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~--~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKELQNSEEG--KKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKE   80 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHhhccccC--CceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhccccccc
Confidence            47899999999999999999988  2211  1122222222211  11111111         112222233222     


Q ss_pred             ---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC-----Chh------HHHHhhhCcCccCC-C
Q 013706          263 ---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-----SEP------MKRVIASNEGFCRR-V  327 (438)
Q Consensus       263 ---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~-----~~~------~~~~~~~~p~l~~R-~  327 (438)
                         .-|||+||++.|..+.......   .-.+.|...++..+++|++-..     +..      +..+...-+.-... |
T Consensus        81 ~~~~DviivDEAqrl~~~~~~~~~~---~~~~~L~~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~~~~~~~~~~~  157 (352)
T PF09848_consen   81 KNKYDVIIVDEAQRLRTKGDQYNNF---SEPNQLDEIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAENLGIEVRHFF  157 (352)
T ss_pred             CCcCCEEEEehhHhhhhcccccccc---ccHHHHHHHHhcCCEEEEEEccccEeecccCCCHHHHHHHHHhcCCccccCc
Confidence               3899999999998843210000   1125566666665565555431     111      22222111211111 1


Q ss_pred             CcceeCCCCCHHHHHHHHHHHHhcc
Q 013706          328 TKFFHFNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       328 ~~~i~~~~~~~~e~~~il~~~l~~~  352 (438)
                      ...-.|.....++..+.++..+...
T Consensus       158 ~L~~q~R~~~~~~~~~wI~~ll~~~  182 (352)
T PF09848_consen  158 ELKTQFRCHGSKEYIDWIDNLLDNK  182 (352)
T ss_pred             CcCcceecCCCHHHHHHHHHHHhcc
Confidence            2333344444577788888888654

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.84  E-value=9.9e-05  Score=65.35  Aligned_cols=108  Identities=21%  Similarity=0.258  Sum_probs=57.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc--------c----cc-----------cc---h
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------F----VG-----------HT---G  251 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--------~----~g-----------~~---~  251 (438)
                      ...-++++||||+|||+++..++......+    ...+.++...+...        +    .+           +.   -
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g----~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   86 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQG----KKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI   86 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence            344578999999999999999987664332    24444444321000        0    00           00   1


Q ss_pred             HHHHHHHHHccCcEEEEeCcccccCCC-CCCCch---hHHHHHHHHHhhccCCCEEEEEecC
Q 013706          252 PKTRRRIKEAEGGILFVDEAYRLIPMQ-KADDKD---YGIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       252 ~~~~~~~~~a~~~il~iDEid~l~~~~-~~~~~~---~~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      ..+...+.+....+|+||-+..+.... ++...+   ...+.+..|.......++.+++++.
T Consensus        87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~  148 (209)
T TIGR02237        87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ  148 (209)
T ss_pred             HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            112222333356899999999886422 211111   1122233444444566777777753

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.82  E-value=2.7e-05  Score=76.87  Aligned_cols=56  Identities=23%  Similarity=0.344  Sum_probs=42.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      -|++..|++.++++|.+.+.....       +.   .....-++|.||||+|||+||+.|++.+..
T Consensus        74 fF~d~yGlee~ieriv~~l~~Aa~-------gl---~~~~~IL~LvGPpG~GKSsLa~~la~~le~  129 (644)
T PRK15455         74 AFEEFYGMEEAIEQIVSYFRHAAQ-------GL---EEKKQILYLLGPVGGGKSSLAERLKSLMER  129 (644)
T ss_pred             chhcccCcHHHHHHHHHHHHHHHH-------hc---CCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence            477889999999998887532211       11   123456889999999999999999998854

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.81  E-value=0.00015  Score=69.48  Aligned_cols=107  Identities=16%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc------ccc----------c-chHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------FVG----------H-TGPKTRRRIKE  260 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~------~~g----------~-~~~~~~~~~~~  260 (438)
                      +..-++++||||+|||+++..++..+...+    .+.+.++..+...+      .+|          + ....+.+.++.
T Consensus        81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g----~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~  156 (372)
T cd01121          81 PGSVILIGGDPGIGKSTLLLQVAARLAKRG----GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEE  156 (372)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHhcC----CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence            445688999999999999999988765422    24444444321111      111          1 11234444555


Q ss_pred             ccCcEEEEeCcccccCCCCC-C--CchhHHHHHHHHHhhccCCCEEEEEec
Q 013706          261 AEGGILFVDEAYRLIPMQKA-D--DKDYGIEALEEIMSVMDGGKVVVIFAG  308 (438)
Q Consensus       261 a~~~il~iDEid~l~~~~~~-~--~~~~~~~~~~~ll~~~~~~~v~vi~~~  308 (438)
                      .+..+|+||++..+...... .  +....++++..|........+.+++++
T Consensus       157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg  207 (372)
T cd01121         157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG  207 (372)
T ss_pred             cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            56799999999988654321 1  123345666777777776666666664

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.80  E-value=7.1e-05  Score=62.22  Aligned_cols=66  Identities=18%  Similarity=0.119  Sum_probs=58.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCC-cccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN   72 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~   72 (438)
                      .|||||++|+..|+.+.+.+|+.    .| +.+...|..|.+++-+|-..|+.++++.|.++..+....+.
T Consensus        11 fgWTalmcaa~eg~~eavsyllg----rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen   11 FGWTALMCAAMEGSNEAVSYLLG----RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             hcchHHHHHhhhcchhHHHHHhc----cCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            58999999999999999999999    56 88999999999999999999999999999998665544443

>PHA02774 E1; Provisional

Probab=97.80  E-value=5.6e-05  Score=74.77  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=23.0

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..++|+||||||||++|-+|.+.+.
T Consensus       435 nciv~~GPP~TGKS~fa~sL~~~L~  459 (613)
T PHA02774        435 NCLVIYGPPDTGKSMFCMSLIKFLK  459 (613)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999999874

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.78  E-value=1.8e-05  Score=63.31  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=21.8

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +++.||||+||||+|+.|++.++.
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~   25 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGF   25 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            689999999999999999998753

...

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.78  E-value=0.0004  Score=67.55  Aligned_cols=119  Identities=21%  Similarity=0.213  Sum_probs=70.4

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPM  277 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~  277 (438)
                      -++++||.+||||++.+.+.+.+..       ..+.++..+.......-  ......+.+.   +...+|||||+.+-. 
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~-------~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~-  108 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLE-------EIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD-  108 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCc-------ceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh-
Confidence            7889999999999999888775432       24555555544332211  1112222222   337999999987742 


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCCE-EEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHH
Q 013706          278 QKADDKDYGIEALEEIMSVMDGGKV-VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK  343 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~~~~v-~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~  343 (438)
                                 -...+-...|.+.. ++|.+++.....  ...-+.|.+|. ..+.+.|++..|...
T Consensus       109 -----------W~~~lk~l~d~~~~~v~itgsss~ll~--~~~~~~L~GR~-~~~~l~PlSF~Efl~  161 (398)
T COG1373         109 -----------WERALKYLYDRGNLDVLITGSSSSLLS--KEISESLAGRG-KDLELYPLSFREFLK  161 (398)
T ss_pred             -----------HHHHHHHHHccccceEEEECCchhhhc--cchhhhcCCCc-eeEEECCCCHHHHHh
Confidence                       22445555565543 333333322222  11245677885 889999999988754

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.77  E-value=0.0005  Score=65.52  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ....++|.||+|+|||+++..||..+.
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999998763

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.76  E-value=0.00017  Score=71.09  Aligned_cols=107  Identities=17%  Similarity=0.241  Sum_probs=64.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccc------cc-----------cchHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF------VG-----------HTGPKTRRRIKE  260 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~------~g-----------~~~~~~~~~~~~  260 (438)
                      +..-++++||||+|||+++..++......+    .+++.++..+...+.      +|           .....+.+.+++
T Consensus        79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g----~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~  154 (446)
T PRK11823         79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAG----GKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE  154 (446)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence            445688999999999999999988764322    244555543322111      11           112233344444


Q ss_pred             ccCcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccCCCEEEEEec
Q 013706          261 AEGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGGKVVVIFAG  308 (438)
Q Consensus       261 a~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~~v~vi~~~  308 (438)
                      ....+|+||++..+....-.+   +....++.++.|.....+..+.+++++
T Consensus       155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~  205 (446)
T PRK11823        155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVG  205 (446)
T ss_pred             hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence            566899999999887543211   122345566777777776666666654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.76  E-value=2.2e-05  Score=81.02  Aligned_cols=123  Identities=25%  Similarity=0.274  Sum_probs=94.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A   81 (438)
                      -|++.||.++..++.-.++.++++   .+......|..|.-.+|+ |..++.+++-+++. .|..++.+|..||||||||
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~---~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEW---AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcc---cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            478999999999999999999996   344445556666666676 56666777666664 6788999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCccc------CCCCCccccccccCCCchhHHHHHHhc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAK------DNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~------d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                      +    ..|+..++..|++.|+++...      +..|.|+- .++...++..+..+|...
T Consensus       649 a----~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~-~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 A----FRGREKLVASLIELGADPGAVTDPSPETPGGKTAA-DLARANGHKGIAGYLSEK  702 (975)
T ss_pred             h----hcCHHHHHHHHHHhccccccccCCCCCCCCCCchh-hhhhcccccchHHHHhhh
Confidence            9    889999999999888776543      33577777 555566777777776543

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.75  E-value=0.0002  Score=61.59  Aligned_cols=138  Identities=16%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCC
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKAD  281 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~  281 (438)
                      ++++||+|||||.+|-.+|+.++.       +++..+.-....++.--+.+....-+...+  =+||||-. +.. .-=+
T Consensus         4 ~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq~y~~l~v~Sgrp~~~el~~~~--RiyL~~r~-l~~-G~i~   72 (233)
T PF01745_consen    4 YLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQCYPELSVGSGRPTPSELKGTR--RIYLDDRP-LSD-GIIN   72 (233)
T ss_dssp             EEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGGG-GGGTTTTT---SGGGTT-E--EEES-----GGG--S--
T ss_pred             EEEECCCCCChhHHHHHHHHHhCC-------CEEEecceecccccccccCCCCHHHHcccc--eeeecccc-ccC-CCcC
Confidence            689999999999999999999987       888877765554432223333322222222  27777532 111 0000


Q ss_pred             CchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCC-cceeCCCCCHHHHHHHHHHHHhcc
Q 013706          282 DKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       282 ~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~-~~i~~~~~~~~e~~~il~~~l~~~  352 (438)
                      ..+.....+..+...-+ ...+++=.+ +-.....+..++-....|. .+..++.++.+--..-.++..++.
T Consensus        73 a~ea~~~Li~~v~~~~~-~~~~IlEGG-SISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M  142 (233)
T PF01745_consen   73 AEEAHERLISEVNSYSA-HGGLILEGG-SISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQM  142 (233)
T ss_dssp             HHHHHHHHHHHHHTTTT-SSEEEEEE---HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccc-cCceEEeCc-hHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence            11222233333333333 333333333 3333333344555545553 455567777766555555555543

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.75  E-value=0.0003  Score=61.61  Aligned_cols=111  Identities=12%  Similarity=0.176  Sum_probs=57.4

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH--HcCCcCCC-C--------EEEeecccccc---cccccchHHHHHHHHHcc---
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY--MVGILPTD-R--------VTEVQRTDLVG---EFVGHTGPKTRRRIKEAE---  262 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~--~~~~~~~~-~--------~~~~~~~~~~~---~~~g~~~~~~~~~~~~a~---  262 (438)
                      .-++|.||+|+|||++.|.|+....  ..|..... .        |......+-+.   ..+......+.++++.+.   
T Consensus        26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~  105 (199)
T cd03283          26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE  105 (199)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence            4678999999999999999986542  12221100 0        00111111000   011111245666777655   


Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHH
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~  316 (438)
                      +.++++||.-+-..      ......+...++..+......+|++|........
T Consensus       106 p~llllDEp~~glD------~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~  153 (199)
T cd03283         106 PVLFLLDEIFKGTN------SRERQAASAAVLKFLKNKNTIGIISTHDLELADL  153 (199)
T ss_pred             CeEEEEecccCCCC------HHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence            58999999743221      1122233444555554445566666655444333

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.75  E-value=0.00014  Score=78.69  Aligned_cols=131  Identities=22%  Similarity=0.331  Sum_probs=86.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc------ccccccccchHHH---HHHHHHc--cCcEE
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEFVGHTGPKT---RRRIKEA--EGGIL  266 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~---~~~~~~a--~~~il  266 (438)
                      ..-++|+.||+.+|||+....+|++.+-       .|+.++.-+      .++.|+-....++   ..++-+|  +|--|
T Consensus       887 ~~fP~LiQGpTSSGKTSMI~yla~~tgh-------kfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWI  959 (4600)
T COG5271         887 SNFPLLIQGPTSSGKTSMILYLARETGH-------KFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWI  959 (4600)
T ss_pred             cCCcEEEecCCCCCcchHHHHHHHHhCc-------cEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEE
Confidence            4457999999999999999999998876       677766543      3333333322211   2233333  56789


Q ss_pred             EEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC---------------EEEEEecCChhH-H---HHhhhCcCccCCC
Q 013706          267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPM-K---RVIASNEGFCRRV  327 (438)
Q Consensus       267 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~-~---~~~~~~p~l~~R~  327 (438)
                      ++||..-...           .++.+|-+++|+++               -+.+.||.+.|. .   ..+  ..|+|.||
T Consensus       960 VLDELNLApT-----------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~L--SrAFRNRF 1026 (4600)
T COG5271         960 VLDELNLAPT-----------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGL--SRAFRNRF 1026 (4600)
T ss_pred             EeeccccCcH-----------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHH--HHHHHhhh
Confidence            9999864432           56677777777632               144555543222 1   121  35788899


Q ss_pred             CcceeCCCCCHHHHHHHHHHHH
Q 013706          328 TKFFHFNDFNSEELAKILHIKM  349 (438)
Q Consensus       328 ~~~i~~~~~~~~e~~~il~~~l  349 (438)
                       ..++|.....+|+..|+....
T Consensus      1027 -lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271        1027 -LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred             -HhhhcccCcHHHHHHHHhccC
Confidence             889999999999999997544

>PRK14532 adenylate kinase; Provisional

Probab=97.71  E-value=0.0002  Score=62.30  Aligned_cols=36  Identities=19%  Similarity=0.328  Sum_probs=28.3

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE  245 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                      +++|.||||+|||++|+.||+.++         +..++..+++.+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g---------~~~is~~d~lr~   37 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG---------MVQLSTGDMLRA   37 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---------CeEEeCcHHHHH
Confidence            589999999999999999998764         344566565554

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.71  E-value=0.00018  Score=64.16  Aligned_cols=28  Identities=32%  Similarity=0.603  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .|..++|.||||+||||+|+.+|+.++.
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~   32 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENL   32 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3466999999999999999999998754

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=97.70  E-value=0.0002  Score=58.32  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=22.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++++++||||+|||+++-.++..+..
T Consensus         1 ~~~~i~~~~G~GKT~~~~~~~~~~~~   26 (144)
T cd00046           1 RDVLLAAPTGSGKTLAALLPILELLD   26 (144)
T ss_pred             CCEEEECCCCCchhHHHHHHHHHHHh
Confidence            37899999999999999888887754

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.70  E-value=0.0002  Score=62.34  Aligned_cols=27  Identities=30%  Similarity=0.241  Sum_probs=20.9

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      .-+.+.||+|||||++|-+.|..+-..
T Consensus        20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~   46 (205)
T PF02562_consen   20 DLVIVNGPAGTGKTFLALAAALELVKE   46 (205)
T ss_dssp             SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence            468899999999999999999776543

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.69  E-value=0.0019  Score=62.19  Aligned_cols=78  Identities=13%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCC--cCCCCEEEeecccc--------ccc------ccccchHHHHHHHHHc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQRTDL--------VGE------FVGHTGPKTRRRIKEA  261 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~~~~--------~~~------~~g~~~~~~~~~~~~a  261 (438)
                      .+..++|+||+|+||||++..+|..+.....  -.+..++..++...        ..+      ...+....+...+...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            4567899999999999999999987753211  11223344443211        011      1223444555555554


Q ss_pred             cC-cEEEEeCccccc
Q 013706          262 EG-GILFVDEAYRLI  275 (438)
Q Consensus       262 ~~-~il~iDEid~l~  275 (438)
                      .+ -+|+||++....
T Consensus       253 ~~~DlVLIDTaGr~~  267 (388)
T PRK12723        253 KDFDLVLVDTIGKSP  267 (388)
T ss_pred             CCCCEEEEcCCCCCc
Confidence            44 799999998765

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.68  E-value=7.8e-05  Score=70.59  Aligned_cols=29  Identities=14%  Similarity=0.235  Sum_probs=25.0

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ......+++||||+|||++++.|++.+..
T Consensus       167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~  195 (416)
T PRK09376        167 GKGQRGLIVAPPKAGKTVLLQNIANSITT  195 (416)
T ss_pred             ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence            35567999999999999999999997764

>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria

Probab=97.67  E-value=0.0036  Score=60.42  Aligned_cols=109  Identities=19%  Similarity=0.317  Sum_probs=72.0

Q ss_pred             CcEEEEeCcccccCCCCCCCchh-HHHHHHHHHhhccC------CCEEEEEecCChhHH---HHhhhCcCccCCC-----
Q 013706          263 GGILFVDEAYRLIPMQKADDKDY-GIEALEEIMSVMDG------GKVVVIFAGYSEPMK---RVIASNEGFCRRV-----  327 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~-~~~~~~~ll~~~~~------~~v~vi~~~~~~~~~---~~~~~~p~l~~R~-----  327 (438)
                      |-+|+|||++.+..-+.    .. -....+.|++.+|+      ..+.+++++++.-++   .=+.+-|||.+|+     
T Consensus       240 GLlI~lDE~e~l~kl~~----~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~  315 (416)
T PF10923_consen  240 GLLILLDELENLYKLRN----DQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFF  315 (416)
T ss_pred             ceEEEEechHHHHhcCC----hHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccc
Confidence            35899999999975332    22 33556677777654      357777887777772   1112234444433     


Q ss_pred             ---------CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706          328 ---------TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  380 (438)
Q Consensus       328 ---------~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (438)
                               .-+|.+++++.+++.+++.+...-..     .++.....++++.+..++...+
T Consensus       316 ~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a-----~~~~~~~~v~d~~l~~~~~~~~  372 (416)
T PF10923_consen  316 ADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYA-----EAYGYESRVDDEELKAFAQHVA  372 (416)
T ss_pred             ccccccCccCceecCCCCCHHHHHHHHHHHHHHHH-----hhCCCCCCCCHHHHHHHHHHHH
Confidence                     45788999999999988887655433     2444446788999999998776

Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=97.66  E-value=0.00024  Score=64.92  Aligned_cols=166  Identities=11%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706          163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  242 (438)
Q Consensus       163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~  242 (438)
                      +++-.+++.+.|.++.+.+              ..+..|+||.|.+|+||++++|..|.....       .++.+..+.-
T Consensus         9 ~lVlf~~ai~hi~ri~RvL--------------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~-------~~~~i~~~~~   67 (268)
T PF12780_consen    9 NLVLFDEAIEHIARISRVL--------------SQPRGHALLVGVGGSGRQSLARLAAFICGY-------EVFQIEITKG   67 (268)
T ss_dssp             -----HHHHHHHHHHHHHH--------------CSTTEEEEEECTTTSCHHHHHHHHHHHTTE-------EEE-TTTSTT
T ss_pred             ceeeHHHHHHHHHHHHHHH--------------cCCCCCeEEecCCCccHHHHHHHHHHHhcc-------ceEEEEeeCC
Confidence            4556677777777775555              235678999999999999999987775544       4554443221


Q ss_pred             cccccccchHHHHHHHHHc----cCcEEEEeCcccccCC-----------CC-CC--CchhHHHHHHHHHhhc-------
Q 013706          243 VGEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPM-----------QK-AD--DKDYGIEALEEIMSVM-------  297 (438)
Q Consensus       243 ~~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~-----------~~-~~--~~~~~~~~~~~ll~~~-------  297 (438)
                      .  -..+-...++.++.+|    ++.+++|+|-+-....           .. .+  +.+....+++.+....       
T Consensus        68 y--~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~  145 (268)
T PF12780_consen   68 Y--SIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISD  145 (268)
T ss_dssp             T--HHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--S
T ss_pred             c--CHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCC
Confidence            0  0111122445555554    3467777764322211           10 00  1222233333332222       


Q ss_pred             -------------cCC-CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcc
Q 013706          298 -------------DGG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       298 -------------~~~-~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~  352 (438)
                                   ..+ +|++++....+.........|+|..++ .+..|.+-+.+.+..+...++.+.
T Consensus       146 ~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~  213 (268)
T PF12780_consen  146 SRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKFLSDI  213 (268)
T ss_dssp             SHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred             chHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence                         111 234444433333334445579999866 778888899999999999998764

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=97.66  E-value=9.1e-05  Score=64.61  Aligned_cols=64  Identities=17%  Similarity=0.247  Sum_probs=29.3

Q ss_pred             cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEec-CChhHHHHhhhCcCccCCCCcceeC
Q 013706          262 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHF  333 (438)
Q Consensus       262 ~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~-~~~~~~~~~~~~p~l~~R~~~~i~~  333 (438)
                      .+++|+|||++.+.+++....... ...+ .++........-++++| +...+      |+.+++..+..+.+
T Consensus        79 ~~~liviDEa~~~~~~r~~~~~~~-~~~~-~~l~~hRh~g~diiliTQ~~~~i------d~~ir~lve~~~~~  143 (193)
T PF05707_consen   79 KGSLIVIDEAQNFFPSRSWKGKKV-PEII-EFLAQHRHYGWDIILITQSPSQI------DKFIRDLVEYHYHC  143 (193)
T ss_dssp             TT-EEEETTGGGTSB---T-T-----HHH-HGGGGCCCTT-EEEEEES-GGGB-------HHHHCCEEEEEEE
T ss_pred             CCcEEEEECChhhcCCCccccccc-hHHH-HHHHHhCcCCcEEEEEeCCHHHH------hHHHHHHHheEEEE
Confidence            579999999999999877421111 1223 33444444445555554 33333      44445544444443

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00018  Score=73.04  Aligned_cols=156  Identities=15%  Similarity=0.178  Sum_probs=103.9

Q ss_pred             HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------------------CEEEEEecCC
Q 013706          254 TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYS  310 (438)
Q Consensus       254 ~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~v~vi~~~~~  310 (438)
                      ....+.+|.+|||||||+..|....+           +.+|+.|..+                       ++.+|++++.
T Consensus       217 ~pGaVHkAngGVLiIdei~lL~~~~~-----------w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~  285 (647)
T COG1067         217 KPGAVHKANGGVLIIDEIGLLAQPLQ-----------WKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNR  285 (647)
T ss_pred             cCcccccccCcEEEEEhhhhhCcHHH-----------HHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCH
Confidence            34577889999999999999986443           6666666431                       4688889888


Q ss_pred             hhHHHHhhhCcCccCCCCcceeC--CCC-CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhh---Hhh
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHF--NDF-NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT---EKQ  384 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~--~~~-~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  384 (438)
                      ..+..+...+|.++.=|....+|  +.| +.+++...+..+.+....      ..--+.++.+++..++.....   ...
T Consensus       286 ~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~------d~~ip~~~~~Av~~li~~a~R~Ag~~~  359 (647)
T COG1067         286 EDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELAR------DGNIPHLDKDAVEELIREAARRAGDQN  359 (647)
T ss_pred             HHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHhccccc
Confidence            88887744444444433333444  445 567777777777666542      111255788898888775542   222


Q ss_pred             hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          385 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      .-.-+.|++.++|..|.-.+         ..++...|+.+|+++|++.-++
T Consensus       360 ~Ltl~~rdl~~lv~~A~~ia---------~~~~~~~I~ae~Ve~a~~~~~~  401 (647)
T COG1067         360 KLTLRLRDLGNLVREAGDIA---------VSEGRKLITAEDVEEALQKREL  401 (647)
T ss_pred             eeccCHHHHHHHHHHhhHHH---------hcCCcccCcHHHHHHHHHhhhh
Confidence            34566789999988776655         1223456999999999988544

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.64  E-value=4.6e-05  Score=65.32  Aligned_cols=28  Identities=29%  Similarity=0.622  Sum_probs=25.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++..++|+||||+|||++|+.+|+.++.
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~   30 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY   30 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            4668999999999999999999998854

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.64  E-value=0.0078  Score=58.49  Aligned_cols=30  Identities=27%  Similarity=0.399  Sum_probs=25.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      +|.-++|.||+|+||||++..+|..+...+
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G  128 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG  128 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            456688999999999999999999886544

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.64  E-value=0.00029  Score=76.27  Aligned_cols=132  Identities=17%  Similarity=0.283  Sum_probs=82.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc------cccc-ccccchHH----HHHHHH-HccCcEE
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGE-FVGHTGPK----TRRRIK-EAEGGIL  266 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~-~~g~~~~~----~~~~~~-~a~~~il  266 (438)
                      .+++||.|.||+|||++..++|+..+.       .++.++.++      +++. ..++.+..    -...+. ...|+-+
T Consensus      1543 ~kpilLEGsPGVGKTSlItaLAr~tG~-------kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WV 1615 (4600)
T COG5271        1543 GKPILLEGSPGVGKTSLITALARKTGK-------KLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWV 1615 (4600)
T ss_pred             CCceeecCCCCccHHHHHHHHHHHhcC-------ceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEE
Confidence            468999999999999999999998876       677777664      3333 22231111    111222 2257899


Q ss_pred             EEeCcccccCCCCCCCchhHHHHHHHHHhhccC----------------CCEEEEEecCChhHH---HHhhhCcCccCCC
Q 013706          267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----------------GKVVVIFAGYSEPMK---RVIASNEGFCRRV  327 (438)
Q Consensus       267 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----------------~~v~vi~~~~~~~~~---~~~~~~p~l~~R~  327 (438)
                      ++||+.-.+.           .++.-|-..+|.                .+..|.+|-++...-   ..  .+.++..||
T Consensus      1616 lLDEiNLaSQ-----------SVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKg--LPkSF~nRF 1682 (4600)
T COG5271        1616 LLDEINLASQ-----------SVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKG--LPKSFLNRF 1682 (4600)
T ss_pred             EeehhhhhHH-----------HHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCccc--CCHHHhhhh
Confidence            9999964431           333333333332                245666664443321   11  134677799


Q ss_pred             CcceeCCCCCHHHHHHHHHHHHhc
Q 013706          328 TKFFHFNDFNSEELAKILHIKMNN  351 (438)
Q Consensus       328 ~~~i~~~~~~~~e~~~il~~~l~~  351 (438)
                       .++.+..++.+++..|+.+...+
T Consensus      1683 -svV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271        1683 -SVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred             -heEEecccccchHHHHHHhhCCc
Confidence             88899999999999998866543

>PLN02674 adenylate kinase

Probab=97.63  E-value=0.0001  Score=66.05  Aligned_cols=27  Identities=22%  Similarity=0.439  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ++..++|.||||+||+|.|+.||+.++
T Consensus        30 ~~~~i~l~G~PGsGKgT~a~~La~~~~   56 (244)
T PLN02674         30 PDKRLILIGPPGSGKGTQSPIIKDEYC   56 (244)
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            457899999999999999999999774

>PLN02200 adenylate kinase family protein

Probab=97.63  E-value=0.00019  Score=64.51  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE  245 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                      ...+..+++.||||+|||++|+.|++.++.         ..++..+++.+
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~---------~his~gdllR~   80 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETFGF---------KHLSAGDLLRR   80 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCC---------eEEEccHHHHH
Confidence            334567889999999999999999997643         35666665543

>PRK10867 signal recognition particle protein; Provisional

Probab=97.60  E-value=0.0041  Score=60.77  Aligned_cols=29  Identities=31%  Similarity=0.433  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      +|.-++|.||||+||||++..+|..+...
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~  127 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK  127 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence            45668899999999999999999877654

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.60  E-value=0.0006  Score=61.16  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=20.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-++++||||||||+++..++..+
T Consensus        23 ~g~~~~i~G~~G~GKTtl~~~~~~~~   48 (230)
T PRK08533         23 AGSLILIEGDESTGKSILSQRLAYGF   48 (230)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45568999999999999986655544

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=97.60  E-value=0.003  Score=55.73  Aligned_cols=133  Identities=5%  Similarity=-0.023  Sum_probs=87.6

Q ss_pred             CceEEecCCC-CCHHHHHHHHHHHHHHcCCcC--CCCEEEeeccccc---ccccccchHHHHHHHHHc-------cCcEE
Q 013706          200 PHMAFLGNPG-TGKTMVARILGRLLYMVGILP--TDRVTEVQRTDLV---GEFVGHTGPKTRRRIKEA-------EGGIL  266 (438)
Q Consensus       200 ~~~ll~GppG-tGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~a-------~~~il  266 (438)
                      ...||.|..+ +||..++..+++.+...++..  ...+..+.+..-.   ++.+  .-..+|++.+..       ...|+
T Consensus        16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KVi   93 (263)
T PRK06581         16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKVA   93 (263)
T ss_pred             heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEEE
Confidence            3589999998 999999999999886543311  1223333221100   0111  223444444332       23799


Q ss_pred             EEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEE-ecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHH
Q 013706          267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK  343 (438)
Q Consensus       267 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~-~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~  343 (438)
                      +|+++|.|..           .+.|+||..+|+  ...++|+ +.+...+      .|.+++|+ ..+.|+.|...+..+
T Consensus        94 II~~ae~mt~-----------~AANALLKtLEEPP~~t~fILit~~~~~L------LpTIrSRC-q~i~~~~p~~~~~~e  155 (263)
T PRK06581         94 IIYSAELMNL-----------NAANSCLKILEDAPKNSYIFLITSRAASI------ISTIRSRC-FKINVRSSILHAYNE  155 (263)
T ss_pred             EEechHHhCH-----------HHHHHHHHhhcCCCCCeEEEEEeCChhhC------chhHhhce-EEEeCCCCCHHHHHH
Confidence            9999999987           455999999998  3455554 4333333      68899998 999999999988888


Q ss_pred             HHHHHHhcc
Q 013706          344 ILHIKMNNQ  352 (438)
Q Consensus       344 il~~~l~~~  352 (438)
                      ....++...
T Consensus       156 ~~~~~~~p~  164 (263)
T PRK06581        156 LYSQFIQPI  164 (263)
T ss_pred             HHHHhcccc
Confidence            877776654

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.59  E-value=9.7e-05  Score=66.72  Aligned_cols=29  Identities=14%  Similarity=0.229  Sum_probs=24.9

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ......++|.||+|+|||++++.+++.+.
T Consensus        13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128          13 IGKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            34567799999999999999999998764

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK13949 shikimate kinase; Provisional

Probab=97.58  E-value=0.00012  Score=62.26  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=23.7

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+++|.||||+|||++++.+|+.++.
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~   27 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGL   27 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            36899999999999999999998865

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.56  E-value=0.00041  Score=58.84  Aligned_cols=100  Identities=15%  Similarity=0.162  Sum_probs=59.3

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-----------------ccccchHHHHHHHHHc-cC
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----------------FVGHTGPKTRRRIKEA-EG  263 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~g~~~~~~~~~~~~a-~~  263 (438)
                      +++.|+||+|||++|..++....       .+.+.+....-.+.                 ...|....+.+.++.. .+
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~-------~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~   74 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELG-------GPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG   74 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcC-------CCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence            68899999999999999987522       14444443322111                 1223445666666554 45


Q ss_pred             cEEEEeCcccccCCCCCCCc----hhHHHHHHHHHhhccCCCEEEEEec
Q 013706          264 GILFVDEAYRLIPMQKADDK----DYGIEALEEIMSVMDGGKVVVIFAG  308 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~----~~~~~~~~~ll~~~~~~~v~vi~~~  308 (438)
                      .+++||=+..+..+.-..+.    +.....+..|+..+......+|+.+
T Consensus        75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVs  123 (169)
T cd00544          75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVS  123 (169)
T ss_pred             CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            79999998877654322111    2223455677777766554444443

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.56  E-value=0.00065  Score=60.94  Aligned_cols=105  Identities=19%  Similarity=0.173  Sum_probs=62.2

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHc-CCcCCCCEEEeeccccc-----------------------------cc-
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLV-----------------------------GE-  245 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~-----------------------------~~-  245 (438)
                      +....+|+.||||||||+++..++...... +.    +++.++..+-.                             .. 
T Consensus        17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~   92 (226)
T PF06745_consen   17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----KVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER   92 (226)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred             CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----cEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence            355678999999999999998876544222 21    33333332100                             00 


Q ss_pred             ------ccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEec
Q 013706          246 ------FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG  308 (438)
Q Consensus       246 ------~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~  308 (438)
                            ........+.+.++..+..+++||-+..+....   .....+..+..|...+....++++++.
T Consensus        93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~---~~~~~r~~l~~l~~~l~~~~~t~llt~  158 (226)
T PF06745_consen   93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD---DPEELRRFLRALIKFLKSRGVTTLLTS  158 (226)
T ss_dssp             ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS---SGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC---CHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence                  001112344556666677999999999882211   234455677888888876666555554

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK05973 replicative DNA helicase; Provisional

Probab=97.55  E-value=0.0018  Score=57.89  Aligned_cols=105  Identities=14%  Similarity=0.109  Sum_probs=56.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc----cccc----------c--------c-ccc-hHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD----LVGE----------F--------V-GHT-GPK  253 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~~~----------~--------~-g~~-~~~  253 (438)
                      +..-+++.|+||+|||+++-.++......|.    +.+.++..+    +...          +        . ..+ ...
T Consensus        63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge----~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~i  138 (237)
T PRK05973         63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGR----TGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADYI  138 (237)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC----eEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHHH
Confidence            4456889999999999999988775533231    222222211    0000          0        0 001 112


Q ss_pred             HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706          254 TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       254 ~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      +..+..+....++|||=+..+.....  ..+ ....+..|.....+..+.+|+++.
T Consensus       139 i~~l~~~~~~~lVVIDsLq~l~~~~~--~~e-l~~~~~~Lk~~Ak~~gitvIl~sQ  191 (237)
T PRK05973        139 IARLASAPRGTLVVIDYLQLLDQRRE--KPD-LSVQVRALKSFARERGLIIVFISQ  191 (237)
T ss_pred             HHHHHHhhCCCEEEEEcHHHHhhccc--chh-HHHHHHHHHHHHHhCCCeEEEEec
Confidence            33333433568999999887753322  122 233344555565666666666643

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.54  E-value=6.8e-05  Score=60.16  Aligned_cols=28  Identities=32%  Similarity=0.541  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..+++|+.|-||||||+++..+|+.++.
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~~   33 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTGL   33 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhCC
Confidence            4579999999999999999999987654

>PF13245 AAA_19: Part of AAA domain

Probab=97.53  E-value=0.00022  Score=51.62  Aligned_cols=25  Identities=44%  Similarity=0.676  Sum_probs=18.7

Q ss_pred             CceEEecCCCCCHH-HHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKT-MVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT-~la~~la~~l~  224 (438)
                      +-+++.|||||||| ++++.++..+.
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~l~~   36 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAELLA   36 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34666999999999 66666666653

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.52  E-value=0.00026  Score=60.17  Aligned_cols=100  Identities=11%  Similarity=0.146  Sum_probs=56.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----------------c-cccchHHHHHHHHH-c-
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----------------F-VGHTGPKTRRRIKE-A-  261 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----------------~-~g~~~~~~~~~~~~-a-  261 (438)
                      .+++.||||+|||++|..++..+..       +.+.+........                | .-|....+.+.++. . 
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~-------~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~   75 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGL-------QVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA   75 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCC-------CcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence            5899999999999999999986542       2333333221110                0 11122245555655 2 


Q ss_pred             cCcEEEEeCcccccCCCCCCCc-hhHHHHHHHHHhhccCCCEEEEEe
Q 013706          262 EGGILFVDEAYRLIPMQKADDK-DYGIEALEEIMSVMDGGKVVVIFA  307 (438)
Q Consensus       262 ~~~il~iDEid~l~~~~~~~~~-~~~~~~~~~ll~~~~~~~v~vi~~  307 (438)
                      .+.+++||=+..+..+.-..+. +.....+..|+..+......+|+.
T Consensus        76 ~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlV  122 (170)
T PRK05800         76 PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILV  122 (170)
T ss_pred             CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3578999998888653221111 223345567777776644434444

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.52  E-value=0.00014  Score=73.75  Aligned_cols=59  Identities=22%  Similarity=0.327  Sum_probs=40.0

Q ss_pred             HHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q 013706            8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF   66 (438)
Q Consensus         8 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   66 (438)
                      ...||.+|+...|+..++.......++|..|.-|+++|+.|..+-+.+++++|++++..
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~   87 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE   87 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc
Confidence            34577777777777777643333456777777777777777777777777777776543

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.52  E-value=0.00079  Score=60.72  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=22.5

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +....++++||||||||+++..++...
T Consensus        23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~   49 (234)
T PRK06067         23 PFPSLILIEGDHGTGKSVLSQQFVYGA   49 (234)
T ss_pred             cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            345668899999999999999997654

>PRK06217 hypothetical protein; Validated

Probab=97.51  E-value=0.00036  Score=60.31  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=23.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..|+|.|+||+|||++|+.|++.++.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~   27 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDI   27 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            35899999999999999999998754

>PRK00625 shikimate kinase; Provisional

Probab=97.50  E-value=8.4e-05  Score=63.32  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=23.3

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +|+|.|+||+|||++++.+|+.++.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~   26 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSL   26 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6899999999999999999998865

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.50  E-value=6.1e-05  Score=77.93  Aligned_cols=91  Identities=23%  Similarity=0.179  Sum_probs=73.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcc------cccCCCC
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE------AKANNGM   75 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~   75 (438)
                      .+|+..+|. |..++.++.-+++.+   .+..++.+|..||||||||+.+|+..++..|++.|++.+      .....|.
T Consensus       606 ~d~qgV~hf-ca~lg~ewA~ll~~~---~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~  681 (975)
T KOG0520|consen  606 RDGQGVIHF-CAALGYEWAFLPISA---DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGK  681 (975)
T ss_pred             ccCCChhhH-hhhcCCceeEEEEee---cccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCC
Confidence            368888998 667788888888876   788999999999999999999999999999998876543      3445677


Q ss_pred             cHHHHHhhcccccCcHHHHHHHHhC
Q 013706           76 TPLHLSVWYSIRSEDYATVKTLLEY  100 (438)
Q Consensus        76 t~L~~A~~~~~~~~~~~~~~~Ll~~  100 (438)
                      |+--.|.    .+|+..+..+|-+.
T Consensus       682 ta~~la~----s~g~~gia~~lse~  702 (975)
T KOG0520|consen  682 TAADLAR----ANGHKGIAGYLSEK  702 (975)
T ss_pred             chhhhhh----cccccchHHHHhhh
Confidence            8877776    77887777666543

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=97.50  E-value=8.1e-05  Score=62.25  Aligned_cols=27  Identities=26%  Similarity=0.534  Sum_probs=24.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..+++|.|++|+||||+.|.+|+.|+.
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~   28 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNL   28 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence            357999999999999999999999987

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.49  E-value=0.00058  Score=59.78  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      -+++.||+|+|||++++++...+..
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4789999999999999999887753

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=97.47  E-value=0.00024  Score=74.34  Aligned_cols=88  Identities=24%  Similarity=0.273  Sum_probs=53.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc----ccccccccchHHHHHHHHH-------------cc
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD----LVGEFVGHTGPKTRRRIKE-------------AE  262 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~-------------a~  262 (438)
                      +.+++.|+||||||++++++.+.+...+.  ...++-+.++.    -+.+..|.....+.+.+..             ..
T Consensus       339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~--~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~  416 (720)
T TIGR01448       339 KVVILTGGPGTGKTTITRAIIELAEELGG--LLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPID  416 (720)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCC--CceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhcccc
Confidence            46899999999999999999888765431  01333333332    1222233323333333321             13


Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG  300 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~  300 (438)
                      ..+|++||+..+..           .....|+..+..+
T Consensus       417 ~~llIvDEaSMvd~-----------~~~~~Ll~~~~~~  443 (720)
T TIGR01448       417 CDLLIVDESSMMDT-----------WLALSLLAALPDH  443 (720)
T ss_pred             CCEEEEeccccCCH-----------HHHHHHHHhCCCC
Confidence            47999999977753           4457777777654

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>PRK06547 hypothetical protein; Provisional

Probab=97.47  E-value=0.00031  Score=59.78  Aligned_cols=29  Identities=24%  Similarity=0.204  Sum_probs=24.5

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..+..+++.|+||+|||++|+.+++.++.
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~   41 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGF   41 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35667888999999999999999997643

>PRK14529 adenylate kinase; Provisional

Probab=97.46  E-value=0.00032  Score=62.13  Aligned_cols=25  Identities=16%  Similarity=0.388  Sum_probs=22.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +++|.||||+|||++++.|++.++.
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~   26 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDL   26 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            5889999999999999999998864

>PRK13947 shikimate kinase; Provisional

Probab=97.45  E-value=0.00011  Score=62.73  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=24.0

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++++.|+||+|||++|+.+|+.++.
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~   27 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSF   27 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            37999999999999999999999876

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.45  E-value=0.00016  Score=62.53  Aligned_cols=50  Identities=28%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      ++|.+...+++...+. .            .....+..++++||||+|||++.+.+...+...
T Consensus         2 fvgR~~e~~~l~~~l~-~------------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen    2 FVGREEEIERLRDLLD-A------------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             -TT-HHHHHHHHHTTG-G------------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-H------------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            4677777777776543 1            223466889999999999999999998888663

>PRK13808 adenylate kinase; Provisional

Probab=97.45  E-value=0.00041  Score=64.89  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=22.4

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .|+|.||||+|||++++.|++.++.
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl   26 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGI   26 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5899999999999999999997743

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.45  E-value=0.0016  Score=57.17  Aligned_cols=112  Identities=15%  Similarity=0.198  Sum_probs=58.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH--HcCCcCCCCEEEe----------eccc----ccccccccchHHHHHHHHHc-c
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY--MVGILPTDRVTEV----------QRTD----LVGEFVGHTGPKTRRRIKEA-E  262 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~--~~~~~~~~~~~~~----------~~~~----~~~~~~g~~~~~~~~~~~~a-~  262 (438)
                      .-++|.||.|+|||++.+.++....  ..|.........+          ...+    -.+.+.++. +.+..++..+ +
T Consensus        30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~-~~~~~il~~~~~  108 (204)
T cd03282          30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEM-SETAYILDYADG  108 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHH-HHHHHHHHhcCC
Confidence            4588999999999999999975442  2222111111011          1110    111122221 2344555555 5


Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhh
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA  318 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~  318 (438)
                      +.++++||+.+=.      .......+...+++.+.+....+|++|....+...+.
T Consensus       109 ~~lvllDE~~~gt------~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~  158 (204)
T cd03282         109 DSLVLIDELGRGT------SSADGFAISLAILECLIKKESTVFFATHFRDIAAILG  158 (204)
T ss_pred             CcEEEeccccCCC------CHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence            6999999984322      1122223334555555544567777776655554443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.44  E-value=0.001  Score=57.95  Aligned_cols=104  Identities=18%  Similarity=0.297  Sum_probs=55.7

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc--------ccccc------c---ch-HHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV--------GEFVG------H---TG-PKTRRRIKE  260 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--------~~~~g------~---~~-~~~~~~~~~  260 (438)
                      |.-++|.||+|+||||.+-.+|..+...+  .+..++..+....-        .+.+|      +   .. ....+.+++
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~--~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~   78 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKG--KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK   78 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhcc--ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence            45688999999999999999988886542  22234444332210        11111      1   11 123344444


Q ss_pred             c---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          261 A---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       261 a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                      .   ..-++|||-......      +.....-+..++..+....+.+++..+.
T Consensus        79 ~~~~~~D~vlIDT~Gr~~~------d~~~~~el~~~~~~~~~~~~~LVlsa~~  125 (196)
T PF00448_consen   79 FRKKGYDLVLIDTAGRSPR------DEELLEELKKLLEALNPDEVHLVLSATM  125 (196)
T ss_dssp             HHHTTSSEEEEEE-SSSST------HHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred             HhhcCCCEEEEecCCcchh------hHHHHHHHHHHhhhcCCccceEEEeccc
Confidence            3   235999998754432      1222334456666665566666665443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK03839 putative kinase; Provisional

Probab=97.43  E-value=0.00011  Score=63.32  Aligned_cols=25  Identities=40%  Similarity=0.640  Sum_probs=22.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++|.|+||+||||+++.+|+.++.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~   26 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGY   26 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4889999999999999999998865

>PRK06762 hypothetical protein; Provisional

Probab=97.42  E-value=0.0003  Score=59.79  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=21.8

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .-++|.|+||+|||++|+.+++.+
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999977

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.41  E-value=0.0012  Score=60.47  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=23.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..++++.||||+|||++.+.++..+.
T Consensus       111 ~~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       111 VLNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence            46899999999999999999998663

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PLN02459 probable adenylate kinase

Probab=97.41  E-value=0.00067  Score=61.20  Aligned_cols=38  Identities=42%  Similarity=0.586  Sum_probs=28.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG  244 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~  244 (438)
                      .+.+++|.||||+|||++|+.+++.++         +..++..+++.
T Consensus        28 ~~~~ii~~G~PGsGK~T~a~~la~~~~---------~~~is~gdllR   65 (261)
T PLN02459         28 RNVNWVFLGCPGVGKGTYASRLSKLLG---------VPHIATGDLVR   65 (261)
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhC---------CcEEeCcHHHH
Confidence            345689999999999999999999774         34555555543

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.41  E-value=0.0022  Score=56.39  Aligned_cols=110  Identities=14%  Similarity=0.140  Sum_probs=55.7

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH--HHcCCcCCCC----------EEEeeccccccccccc---chHHHHHHHHHc-cC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL--YMVGILPTDR----------VTEVQRTDLVGEFVGH---TGPKTRRRIKEA-EG  263 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l--~~~~~~~~~~----------~~~~~~~~~~~~~~g~---~~~~~~~~~~~a-~~  263 (438)
                      ..+++.||.|+|||++.+.++...  ...|......          +..+...+......+.   ....+..++..+ .+
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~  109 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR  109 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence            468999999999999999998433  1222111111          1111111111111111   223344445443 46


Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKR  315 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~  315 (438)
                      .++++||.-+=..      ......+...+++.+......+|++|.......
T Consensus       110 ~llllDEp~~gld------~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~  155 (202)
T cd03243         110 SLVLIDELGRGTS------TAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD  155 (202)
T ss_pred             eEEEEecCCCCCC------HHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH
Confidence            8999999854332      112223344555555443455666665544433

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.40  E-value=0.0013  Score=59.30  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      .+...+|++||||+|||++|-.++..
T Consensus        19 ~~gs~~lI~G~pGsGKT~la~~~l~~   44 (237)
T TIGR03877        19 PERNVVLLSGGPGTGKSIFSQQFLWN   44 (237)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            35667899999999999999877654

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]

Probab=97.39  E-value=0.0015  Score=63.96  Aligned_cols=107  Identities=16%  Similarity=0.198  Sum_probs=57.0

Q ss_pred             hhhcChHHHHHHHHHHHH-HhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC---CEEEe
Q 013706          162 SNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD---RVTEV  237 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~---~~~~~  237 (438)
                      -.|.|.+.+|+.|.-++- .+.   +.-..|..  .+..-|||+.|.|-|-|+-|.|.+-+.... .+..++   .=+-+
T Consensus       301 PSI~GH~~vKkAillLLlGGvE---k~L~NGsh--lRGDINiLlvGDPSvAKSQLLRyVLntApl-AI~TTGRGSSGVGL  374 (818)
T KOG0479|consen  301 PSIYGHDYVKKAILLLLLGGVE---KNLENGSH--LRGDINILLVGDPSVAKSQLLRYVLNTAPL-AIATTGRGSSGVGL  374 (818)
T ss_pred             cccccHHHHHHHHHHHHhccce---eccCCCce--eccceeEEEecCchHHHHHHHHHHHhcccc-cccccCCCCCCccc
Confidence            357899999988775421 111   11111221  234568999999999999999998664321 111010   00111


Q ss_pred             ecccccccccccchHHH-HHHHHHccCcEEEEeCcccccC
Q 013706          238 QRTDLVGEFVGHTGPKT-RRRIKEAEGGILFVDEAYRLIP  276 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~-~~~~~~a~~~il~iDEid~l~~  276 (438)
                      .++-...+--||  +.+ ..+.-.|..||+-|||+|+++.
T Consensus       375 TAAVTtD~eTGE--RRLEAGAMVLADRGVVCIDEFDKMsD  412 (818)
T KOG0479|consen  375 TAAVTTDQETGE--RRLEAGAMVLADRGVVCIDEFDKMSD  412 (818)
T ss_pred             eeEEeeccccch--hhhhcCceEEccCceEEehhcccccc
Confidence            111111111221  111 1123345679999999999975

>TIGR02012 tigrfam_recA protein RecA

Probab=97.39  E-value=0.0013  Score=61.50  Aligned_cols=108  Identities=16%  Similarity=0.210  Sum_probs=59.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc----cccc------------cc---hHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVG------------HT---GPKTRRRI  258 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----~~~g------------~~---~~~~~~~~  258 (438)
                      +..-++++||||||||+||-.++......+    .+++.++......    +.+|            ..   ...+..++
T Consensus        54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g----~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li  129 (321)
T TIGR02012        54 RGRIIEIYGPESSGKTTLALHAIAEAQKAG----GTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV  129 (321)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC----CcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence            444578999999999999988776654322    2444444322111    0011            01   11122223


Q ss_pred             HHccCcEEEEeCcccccCCCC--CC---C-chhHH----HHHHHHHhhccCCCEEEEEecC
Q 013706          259 KEAEGGILFVDEAYRLIPMQK--AD---D-KDYGI----EALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       259 ~~a~~~il~iDEid~l~~~~~--~~---~-~~~~~----~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      +.....+|+||=+..+.+...  +.   . .....    +.+..|...+...++.+|+++.
T Consensus       130 ~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ  190 (321)
T TIGR02012       130 RSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ  190 (321)
T ss_pred             hccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            333458999999999886421  11   1 11112    3344555556667788888753

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.39  E-value=0.0017  Score=57.48  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=20.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      ..++|.||.|+|||++.|.++.
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            5689999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.38  E-value=0.00022  Score=57.39  Aligned_cols=40  Identities=25%  Similarity=0.211  Sum_probs=29.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      +...++|.|+.|+|||+++|.+++.++......+..|.-+
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~lv   60 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTLV   60 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeeee
Confidence            4456889999999999999999998875444334444333

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.38  E-value=0.00088  Score=60.03  Aligned_cols=28  Identities=29%  Similarity=0.324  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ...-++++||||+|||+++..++.....
T Consensus        22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~   49 (225)
T PRK09361         22 RGTITQIYGPPGSGKTNICLQLAVEAAK   49 (225)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3445789999999999999999886643

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.37  E-value=0.00013  Score=59.49  Aligned_cols=24  Identities=46%  Similarity=0.648  Sum_probs=22.1

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +-+.|||||||||+|+.||+.++.
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl   26 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGL   26 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCC
Confidence            568899999999999999999876

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.37  E-value=0.00074  Score=57.54  Aligned_cols=27  Identities=33%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      -++|.|+||+|||++|+-+|++|....
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~~i   29 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQEI   29 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHhh
Confidence            478999999999999999999997533

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.36  E-value=0.00012  Score=60.39  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=20.6

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +++.||||+|||++|+.+++.+.
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            68999999999999999998653

...

>PRK13948 shikimate kinase; Provisional

Probab=97.36  E-value=0.00024  Score=61.01  Aligned_cols=43  Identities=23%  Similarity=0.370  Sum_probs=33.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH  249 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~  249 (438)
                      ++.+++|.|++|+|||++++.+|+.++.       +|+..  ..+..+..|.
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD~--D~~ie~~~g~   51 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALML-------HFIDT--DRYIERVTGK   51 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEEC--CHHHHHHHhC
Confidence            5678999999999999999999998865       66543  3444455554

>PRK04040 adenylate kinase; Provisional

Probab=97.34  E-value=0.00035  Score=60.46  Aligned_cols=26  Identities=31%  Similarity=0.268  Sum_probs=23.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +..++++|+||+|||++++.+++.+.
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            45689999999999999999999873

>TIGR00959 ffh signal recognition particle protein

Probab=97.34  E-value=0.037  Score=54.17  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .|.-++|.||||+|||+++..+|..+.
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~  124 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLK  124 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            456788999999999999999998864

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=97.33  E-value=0.00019  Score=60.09  Aligned_cols=25  Identities=36%  Similarity=0.663  Sum_probs=22.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +++|+||||+|||++|+.+++.++.
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~   25 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGL   25 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999998854

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.33  E-value=0.0002  Score=61.94  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=27.3

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE  245 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                      +++.||||+|||++|+.+|+.++         +..++..+++.+
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~---------~~~is~~d~lr~   36 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFG---------FTHLSAGDLLRA   36 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC---------CeEEECChHHHH
Confidence            68999999999999999999774         345555555543

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR00416 sms DNA repair protein RadA

Probab=97.33  E-value=0.002  Score=63.71  Aligned_cols=107  Identities=16%  Similarity=0.165  Sum_probs=62.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc------ccc----------c-chHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------FVG----------H-TGPKTRRRIKE  260 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~------~~g----------~-~~~~~~~~~~~  260 (438)
                      +..-++++|+||+|||+++..++..+...+    .+++.++..+...+      -+|          + ....+...+++
T Consensus        93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g----~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~  168 (454)
T TIGR00416        93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ----MKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE  168 (454)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC----CcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence            445688999999999999999987664432    24444444321111      011          1 12234444555


Q ss_pred             ccCcEEEEeCcccccCCCCC-CC--chhHHHHHHHHHhhccCCCEEEEEec
Q 013706          261 AEGGILFVDEAYRLIPMQKA-DD--KDYGIEALEEIMSVMDGGKVVVIFAG  308 (438)
Q Consensus       261 a~~~il~iDEid~l~~~~~~-~~--~~~~~~~~~~ll~~~~~~~v~vi~~~  308 (438)
                      ....+++||.+..+...... ..  ....++.+..|........+.+++++
T Consensus       169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~  219 (454)
T TIGR00416       169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVG  219 (454)
T ss_pred             cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence            56789999999988653221 11  12234555666666666566666654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.32  E-value=0.00019  Score=57.93  Aligned_cols=22  Identities=41%  Similarity=0.687  Sum_probs=20.5

Q ss_pred             eEEecCCCCCHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l  223 (438)
                      |+|.|+|||||||+|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999975

...

>COG1485 Predicted ATPase [General function prediction only]

Probab=97.31  E-value=0.00035  Score=64.60  Aligned_cols=109  Identities=17%  Similarity=0.099  Sum_probs=61.3

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe--ecccccccccccchHHHHHHHHHcc-CcEEEEeCcc
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV--QRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAY  272 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~a~-~~il~iDEid  272 (438)
                      ..+++++-|||+-|.|||+|--.....+..... .+..|...  ..-.-+..+.|++...-.-.-+-+. .-||.|||++
T Consensus        62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k-~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~  140 (367)
T COG1485          62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERK-RRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFE  140 (367)
T ss_pred             CCCCceEEEECCCCccHHHHHHHHHhhCCcccc-ccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeee
Confidence            347889999999999999999888876632110 01111000  0000112234554222222222233 3799999984


Q ss_pred             cccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH
Q 013706          273 RLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM  313 (438)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~  313 (438)
                      ---        -...-++..|+..+=...|++++|+|..|-
T Consensus       141 VtD--------I~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~  173 (367)
T COG1485         141 VTD--------IADAMILGRLLEALFARGVVLVATSNTAPD  173 (367)
T ss_pred             ecC--------hHHHHHHHHHHHHHHHCCcEEEEeCCCChH
Confidence            221        112256778888776667888888775553

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.29  E-value=0.0094  Score=56.88  Aligned_cols=76  Identities=14%  Similarity=0.129  Sum_probs=46.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc--cccc------------ccccchHHHHHHHHHcc-
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD--LVGE------------FVGHTGPKTRRRIKEAE-  262 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~~------------~~g~~~~~~~~~~~~a~-  262 (438)
                      .+..++|.||+|+|||+++..||..+...+.  +..++..+...  ...+            .+......+.+.+..+. 
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk--kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~  317 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK--TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE  317 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence            4567899999999999999999988864332  11233332221  1111            11234555666665443 


Q ss_pred             ---CcEEEEeCccccc
Q 013706          263 ---GGILFVDEAYRLI  275 (438)
Q Consensus       263 ---~~il~iDEid~l~  275 (438)
                         .-+||||-..+..
T Consensus       318 ~~~~DvVLIDTaGRs~  333 (436)
T PRK11889        318 EARVDYILIDTAGKNY  333 (436)
T ss_pred             ccCCCEEEEeCccccC
Confidence               3789999876544

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=97.29  E-value=0.00097  Score=57.85  Aligned_cols=24  Identities=21%  Similarity=0.220  Sum_probs=18.7

Q ss_pred             CceEEecCCCCCHHH-HHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTM-VARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~-la~~la~~l  223 (438)
                      .++++.||+|+|||+ ++..+...+
T Consensus        25 ~~~~i~~~~GsGKT~~~~~~~~~~~   49 (201)
T smart00487       25 RDVILAAPTGSGKTLAALLPALEAL   49 (201)
T ss_pred             CcEEEECCCCCchhHHHHHHHHHHh
Confidence            689999999999999 555554444

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.29  E-value=0.00065  Score=61.91  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.7

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      |+|.|+||+|||++|+.+++.+...
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~   26 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEK   26 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            6899999999999999999988653

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK08233 hypothetical protein; Provisional

Probab=97.28  E-value=0.0012  Score=56.94  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=21.6

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .-+.+.|+||+||||+|+.|+..+.
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3467889999999999999998764

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=97.28  E-value=0.0019  Score=59.11  Aligned_cols=26  Identities=15%  Similarity=0.206  Sum_probs=21.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-++++||||||||+++-.++...
T Consensus        35 ~gs~~lI~G~pGtGKT~l~~qf~~~~   60 (259)
T TIGR03878        35 AYSVINITGVSDTGKSLMVEQFAVTQ   60 (259)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45568899999999999999887654

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.27  E-value=0.00018  Score=59.62  Aligned_cols=24  Identities=42%  Similarity=0.627  Sum_probs=21.1

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++++|.||||||++++.++ .++.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~   25 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGY   25 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCC
Confidence            57899999999999999999 6654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.26  E-value=0.00029  Score=50.00  Aligned_cols=22  Identities=41%  Similarity=0.674  Sum_probs=20.3

Q ss_pred             eEEecCCCCCHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l  223 (438)
                      +.+.|+||+|||++++.+++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999976

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.25  E-value=0.00098  Score=59.26  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.6

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .|++.||||+|||++|+.||+.++.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~   26 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGI   26 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4899999999999999999998754

>TIGR00767 rho transcription termination factor Rho

Probab=97.25  E-value=0.0005  Score=65.51  Aligned_cols=30  Identities=13%  Similarity=0.237  Sum_probs=25.0

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ......+++.||||+|||++++.+++.+..
T Consensus       165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~  194 (415)
T TIGR00767       165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITR  194 (415)
T ss_pred             eCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence            345566999999999999999999987643

Members of this family differ in the specificity of RNA binding.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.24  E-value=0.0025  Score=55.89  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.||.|+|||++.|.++.
T Consensus        30 ~~~ltG~Ng~GKStll~~i~~   50 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLGL   50 (200)
T ss_pred             EEEEECCCCCChHHHHHHHHH
Confidence            599999999999999999983

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR01351 adk adenylate kinases

Probab=97.24  E-value=0.0008  Score=59.56  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=21.5

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      |++.||||+|||++|+.||+.++.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~   25 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGL   25 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC
Confidence            789999999999999999987643

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PTZ00202 tuzin; Provisional

Probab=97.24  E-value=0.012  Score=56.65  Aligned_cols=52  Identities=19%  Similarity=0.224  Sum_probs=38.7

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ...+.+|.+....++.+.+...             ....+.-++|.||+|+|||+++|.+...+.
T Consensus       260 ~~~~FVGReaEla~Lr~VL~~~-------------d~~~privvLtG~~G~GKTTLlR~~~~~l~  311 (550)
T PTZ00202        260 VIRQFVSREAEESWVRQVLRRL-------------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG  311 (550)
T ss_pred             CccCCCCcHHHHHHHHHHHhcc-------------CCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3567788888888887765422             122445678999999999999999987654

>PRK14531 adenylate kinase; Provisional

Probab=97.23  E-value=0.00028  Score=61.02  Aligned_cols=26  Identities=35%  Similarity=0.470  Sum_probs=23.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..+++.||||+|||++++.||+.++.
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g~   28 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHGL   28 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46999999999999999999998754

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.22  E-value=0.00024  Score=60.94  Aligned_cols=26  Identities=27%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +-++|.||||+|||++|+.+++.+..
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~   28 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAE   28 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            45889999999999999999997753

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.22  E-value=0.0015  Score=56.59  Aligned_cols=27  Identities=22%  Similarity=0.335  Sum_probs=23.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ....+++.||+|+|||++.+++...+.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            456899999999999999999988653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.22  E-value=0.0061  Score=55.83  Aligned_cols=97  Identities=19%  Similarity=0.153  Sum_probs=52.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe------ecccccccccc-cchHHHHHHHHH---ccCcEEEE
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV------QRTDLVGEFVG-HTGPKTRRRIKE---AEGGILFV  268 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~------~~~~~~~~~~g-~~~~~~~~~~~~---a~~~il~i  268 (438)
                      ...++|.||+|+|||++.+++...+....    ..++.+      .........+. +........++.   ..+-+|++
T Consensus        80 ~GlilisG~tGSGKTT~l~all~~i~~~~----~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~v  155 (264)
T cd01129          80 HGIILVTGPTGSGKTTTLYSALSELNTPE----KNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMV  155 (264)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhhCCCC----CeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEe
Confidence            34589999999999999999877664211    112222      11111111111 111122333333   35689999


Q ss_pred             eCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH
Q 013706          269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM  313 (438)
Q Consensus       269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~  313 (438)
                      +|+..-             +....+++....+.. ++.+...+..
T Consensus       156 gEiR~~-------------e~a~~~~~aa~tGh~-v~tTlHa~~~  186 (264)
T cd01129         156 GEIRDA-------------ETAEIAVQAALTGHL-VLSTLHTNDA  186 (264)
T ss_pred             ccCCCH-------------HHHHHHHHHHHcCCc-EEEEeccCCH
Confidence            999422             333556677766765 5555444333

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.21  E-value=0.0017  Score=60.79  Aligned_cols=108  Identities=17%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----cccc-----------c----hHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH-----------T----GPKTRRRI  258 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----~~g~-----------~----~~~~~~~~  258 (438)
                      +..-+.++||||+|||++|-.++......+    ...+.++.......    .+|-           +    ...+..++
T Consensus        54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g----~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li  129 (325)
T cd00983          54 KGRIIEIYGPESSGKTTLALHAIAEAQKLG----GTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV  129 (325)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC----CCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence            334577999999999999998877654322    24444444221100    0110           1    11122223


Q ss_pred             HHccCcEEEEeCcccccCCCC--CCC--ch--h----HHHHHHHHHhhccCCCEEEEEecC
Q 013706          259 KEAEGGILFVDEAYRLIPMQK--ADD--KD--Y----GIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       259 ~~a~~~il~iDEid~l~~~~~--~~~--~~--~----~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      +.....+|+||=+-.+.+...  +..  ..  .    ..+.+..|...+...++.+|+++.
T Consensus       130 ~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ  190 (325)
T cd00983         130 RSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ  190 (325)
T ss_pred             hccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence            333458999999999886422  111  11  1    123445555555667777777753

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK14530 adenylate kinase; Provisional

Probab=97.20  E-value=0.00032  Score=62.38  Aligned_cols=26  Identities=31%  Similarity=0.552  Sum_probs=23.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +.++|.||||+||||+|+.||+.++.
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~   29 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGV   29 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            47999999999999999999998854

>PRK14974 cell division protein FtsY; Provisional

Probab=97.19  E-value=0.0044  Score=58.50  Aligned_cols=30  Identities=37%  Similarity=0.515  Sum_probs=25.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .|.-++|.||||+||||++..+|..+...+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g  168 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG  168 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            456788999999999999999998876543

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.18  E-value=0.0029  Score=52.29  Aligned_cols=27  Identities=30%  Similarity=0.564  Sum_probs=23.2

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+.-.+++.||+|+||+++-|++|...
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            355678999999999999999999854

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=97.18  E-value=0.0031  Score=54.95  Aligned_cols=59  Identities=19%  Similarity=0.206  Sum_probs=36.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP  276 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~  276 (438)
                      ...-++|.|+.|+|||++.+.|+.+.+..      .....+.            +.  ........-|+.|||++.+..
T Consensus        51 ~d~~lvl~G~QG~GKStf~~~L~~~~~~d------~~~~~~~------------kd--~~~~l~~~~iveldEl~~~~k  109 (198)
T PF05272_consen   51 NDTVLVLVGKQGIGKSTFFRKLGPEYFSD------SINDFDD------------KD--FLEQLQGKWIVELDELDGLSK  109 (198)
T ss_pred             CceeeeEecCCcccHHHHHHHHhHHhccC------ccccCCC------------cH--HHHHHHHhHheeHHHHhhcch
Confidence            34457899999999999999997653221      0000000            01  112233457999999998874

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.18  E-value=0.0012  Score=54.95  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=21.9

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++|.|+||+|||++|+.++..+..
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~   25 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQ   25 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            678999999999999999998854

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.17  E-value=0.0088  Score=55.43  Aligned_cols=28  Identities=25%  Similarity=0.365  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..++|.||+|+|||+++..+|..+..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~  220 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVL  220 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3557889999999999999999987754

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.17  E-value=0.00057  Score=64.86  Aligned_cols=49  Identities=27%  Similarity=0.354  Sum_probs=38.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      ..+++-.-.+.+++++.+                     ...++|+.||||.||||+|.++|+.+...|.
T Consensus       244 ~~ledY~L~dkl~eRL~e---------------------raeGILIAG~PGaGKsTFaqAlAefy~~~Gk  292 (604)
T COG1855         244 LSLEDYGLSDKLKERLEE---------------------RAEGILIAGAPGAGKSTFAQALAEFYASQGK  292 (604)
T ss_pred             echhhcCCCHHHHHHHHh---------------------hhcceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence            345555556666666665                     3468999999999999999999999987664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	438
3syl_A	309	Crystal Structure Of The Aaa+ Protein Cbbx, Native		2e-35
3zuh_A	289	Negative Stain Em Map Of The Aaa Protein Cbbx, A Re		3e-35
3syk_A	309	Crystal Structure Of The Aaa+ Protein Cbbx, Selenom		4e-33
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-18
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-16
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-15
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-15
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-14
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-14
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-13
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-13
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-13
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-13
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-13
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		6e-13
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-13
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		9e-13
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-12
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-12
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-12
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-07
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-12
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-12
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-12
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-12
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-12
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-12
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-12
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-11
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		7e-10
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-09
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
1uoh_A	226	Human Gankyrin Length = 226		5e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-08
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-08
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		6e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-07
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-07
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-07
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-07
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-06
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		1e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		2e-06
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		4e-06
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		4e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-06
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		5e-06
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		5e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-06
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		5e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-05
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		2e-05
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		2e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-05
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		4e-05
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		5e-05
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		5e-05
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		5e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		6e-05
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		6e-05
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		6e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		7e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		4e-04

>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native Structure Length = 309

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 142 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 200
           RA    S  K  ++EL+ EL   +GL  +K ++R+ A  +L++  R+ LGL   A   P 
Sbjct: 14  RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67
Query: 201 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
            HM+F GNPGTGKT VA  +  LL+ +G +    +  V R DLVG+++GHT PKT+  +K
Sbjct: 68  LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127
Query: 260 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 317
            A GG+LF+DEAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY++ M+   
Sbjct: 128 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185
Query: 318 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 352
            SN GF  R+     F D++ EEL +I    +++Q
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220

>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type Rubisco Activase From R. Sphaeroides Length = 289

Iteration: 1
 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 142 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 200
           RA    S  K  ++EL+ EL   +GL  +K ++R+ A  +L++  R+ LGL   A   P 
Sbjct: 7   RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 60
Query: 201 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
            HM+F GNPGTGKT VA  +  LL+ +G +    +  V R DLVG+++GHT PKT+  +K
Sbjct: 61  LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 120
Query: 260 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 317
            A GG+LF+DEAY L   +  +++DYG EA+E ++ VM+  +  +VVI AGY++ M+   
Sbjct: 121 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 178
Query: 318 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 352
            SN GF  R+     F D++ EEL +I    +++Q
Sbjct: 179 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 213

>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Selenomethionine Structure Length = 309

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/215 (38%), Positives = 127/215 (59%), Gaps = 12/215 (5%)
Query: 142 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 200
           RA    S  K  ++EL+ EL   +GL  +K ++R+ A  +L++  R+ LGL   A   P 
Sbjct: 14  RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67
Query: 201 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
            H +F GNPGTGKT VA     LL+ +G +    +  V R DLVG+++GHT PKT+  +K
Sbjct: 68  LHXSFTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127
Query: 260 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 317
            A GG+LF+DEAY L   +  +++DYG EA+E ++ V +  +  +VVI AGY++  +   
Sbjct: 128 RAXGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVXENNRDDLVVILAGYADRXENFF 185
Query: 318 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 352
            SN GF  R+     F D++ EEL +I    +++Q
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHXLDDQ 220

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH++A     E+VK LLE       ++ A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + AK  NG TPLHL+     R+     VK LLE  AD +AKD  G+TPL HL+   G 
Sbjct: 59  ADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGH 113
Query: 125 AKLRELLL 132
            ++ +LLL
Sbjct: 114 LEVVKLLL 121

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 9/129 (6%)
Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           +  TPLH++A     EIV+ LL++      ++ A + YG TPLH+AA NG  E  ++LL 
Sbjct: 46  LGHTPLHLAAKTGHLEIVEVLLKY----GADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
           HGA + AK   G TPLHL+  Y    E    V+ LL+Y AD +A+D  GKT  D +S   
Sbjct: 102 HGADVNAKDYEGFTPLHLAA-YDGHLE---IVEVLLKYGADVNAQDKFGKTAFD-ISIDN 156
Query: 123 GSAKLRELL 131
           G+  L E+L
Sbjct: 157 GNEDLAEIL 165

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 8/113 (7%)
Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
            +TPLH++A     E+VK LL        +  A++  G+TPLH+AA+NG  E  KLLL+ 
Sbjct: 37  GKTPLHLAAENGHKEVVKLLLSQ----GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
           GA   AK ++G TPLHL+     +      VK LL   AD +  D++G+TPLD
Sbjct: 93  GADPNAKDSDGKTPLHLAAENGHKE----VVKLLLSQGADPNTSDSDGRTPLD 141

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 48  AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
           AA+NG  +  K LL +GA + A  ++G TPLHL+     +      VK LL   AD +AK
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKE----VVKLLLSQGADPNAK 66
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
           D++GKTPL HL+   G  ++ +LLL
Sbjct: 67  DSDGKTPL-HLAAENGHKEVVKLLL 90

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A     EIV+ LL+    +  ++ A ++ G TPLH+AA  G  E  ++LL HGA
Sbjct: 49  TPLHLAASNGHLEIVEVLLK----NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + A  N+G TPLHL+  Y         V+ LL++ AD +A+D  GKT  D +S   G+ 
Sbjct: 105 DVNAYDNDGHTPLHLAAKYG----HLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
            L E+L
Sbjct: 160 DLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 9/126 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A +   EIV+ LL+    +  ++ A +  G TPLH+AA  G  E  ++LL +GA
Sbjct: 49  TPLHLAAYWGHLEIVEVLLK----NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA 104
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + AK +NG+TPLHL+            V+ LL+Y AD +A+D  GKT  D +S   G+ 
Sbjct: 105 DVNAKDDNGITPLHLAA----NRGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISINNGNE 159
Query: 126 KLRELL 131
            L E+L
Sbjct: 160 DLAEIL 165

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 8/113 (7%)
Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
            +TPLH +A     EIVK L+    +   ++ A++  G TPLH AAK G  E  KLL++ 
Sbjct: 37  GRTPLHYAAKEGHKEIVKLLI----SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
           GA + AK ++G TPLH    Y+ +      VK L+   AD +  D++G+TPLD
Sbjct: 93  GADVNAKDSDGRTPLH----YAAKEGHKEIVKLLISKGADVNTSDSDGRTPLD 141

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 48  AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
           AA+NG  +  K L+ +GA + A  ++G TPLH    Y+ +      VK L+   AD +AK
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLH----YAAKEGHKEIVKLLISKGADVNAK 66
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
           D++G+TPL H +   G  ++ +LL+
Sbjct: 67  DSDGRTPL-HYAAKEGHKEIVKLLI 90

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 8/113 (7%)
Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
            +TPLH +A     E+VK L+    +   ++ A++  G TPLH AA+NG  E  KLL++ 
Sbjct: 37  GRTPLHHAAENGHKEVVKLLI----SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
           GA + AK ++G TPLH    ++  +     VK L+   AD +  D++G+TPLD
Sbjct: 93  GADVNAKDSDGRTPLH----HAAENGHKEVVKLLISKGADVNTSDSDGRTPLD 141

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
            +TPLH +A     EIVK LL    +   +  A++  G TPLH AA+NG  E  KLLL+ 
Sbjct: 37  GRTPLHYAAENGHKEIVKLLL----SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
           GA   AK ++G TPLH    Y+  +     VK LL   AD +  D++G+TPLD
Sbjct: 93  GADPNAKDSDGRTPLH----YAAENGHKEIVKLLLSKGADPNTSDSDGRTPLD 141

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 48  AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
           AA+NG  +  K LL +GA   A  ++G TPLH    Y+  +     VK LL   AD +AK
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDSDGRTPLH----YAAENGHKEIVKLLLSKGADPNAK 66
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
           D++G+TPL H +   G  ++ +LLL
Sbjct: 67  DSDGRTPL-HYAAENGHKEIVKLLL 90

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 11/127 (8%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A     EIV+ LL+       +++A +++G TPLH+AA  G  E  ++LL +GA
Sbjct: 49  TPLHLAAYSGHLEIVEVLLK----HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104
Query: 66  FIEAKANNGMTPLHLSV-WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
            + A  ++GMTPLHL+  W  +       V+ LL++ AD +A+D  GKT  D +S   G+
Sbjct: 105 DVNAMDSDGMTPLHLAAKWGYLE-----IVEVLLKHGADVNAQDKFGKTAFD-ISIDNGN 158
Query: 125 AKLRELL 131
             L E+L
Sbjct: 159 EDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 9/130 (6%)
Query: 2   QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
            +  TPLH++A +   EIV+ LL+    +  ++ A +  G TPLH+AA  G  E  ++LL
Sbjct: 45  HVGWTPLHLAAYFGHLEIVEVLLK----NGADVNADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 62  AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
            +GA + A  +NG TPLHL+            V+ LL++ AD +A+D  GKT  D +S  
Sbjct: 101 KNGADVNANDHNGFTPLHLAANIG----HLEIVEVLLKHGADVNAQDKFGKTAFD-ISID 155
Query: 122 PGSAKLRELL 131
            G+  L E+L
Sbjct: 156 NGNEDLAEIL 165

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
           G TPLH+AA+NG  E  KLLL  GA + AK  NG TPLHL+     R+     VK LLE 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEA 57
Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
            AD +AKD  G+TPL HL+   G  ++ +LLL
Sbjct: 58  GADVNAKDKNGRTPL-HLAARNGHLEVVKLLL 88

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
             TPLH++A     EIV+ LL+    +  ++ A +  G TPLH+AAK G  E  ++LL +
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLK----NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           GA + A    G TPLHL+      +     V+ LL+Y AD +A+D  GKT  D +S   G
Sbjct: 103 GADVNADDTIGSTPLHLAA----DTGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISIDNG 157
Query: 124 SAKLRELL 131
           +  L E+L
Sbjct: 158 NEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 9/126 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A +   EIV+ LL+    +  ++ A++  G TPLH+AA+ G  E  ++LL +GA
Sbjct: 49  TPLHLAAHFGHLEIVEVLLK----NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + A  ++G TPLHL+     +      V+ LL+  AD +A+D  GKT  D +S   G+ 
Sbjct: 105 DVNASDSHGFTPLHLAA----KRGHLEIVEVLLKNGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
            L E+L
Sbjct: 160 DLAEIL 165

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 8/111 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A     EIV+ LL+   +    + A++  G TPLH+AA+ G  E  ++LL  GA
Sbjct: 37  TPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
            + AK  +G TPLHL+     R      V+ LL+  AD +A+D  GKTP D
Sbjct: 93  DVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAQDKFGKTPFD 139

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 9/126 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A     EIV+ LL+       ++ A++  G TPLH+AA+ G  E  ++LL  GA
Sbjct: 37  TPLHLAAREGHLEIVEVLLKA----GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + AK  +G TPLHL+     R      V+ LL+  AD +A+D  GKTP D L+   G+ 
Sbjct: 93  DVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAQDKFGKTPFD-LAIDNGNE 147
Query: 126 KLRELL 131
            + E+L
Sbjct: 148 DIAEVL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH++A     EIV+ LL     +  ++ A +  G TPLH+AA  G  E  ++LL +G
Sbjct: 36  RTPLHMAAAVGHLEIVEVLLR----NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + AK   G+TPL+L+ ++         V+ LL++ AD +A+D  GKT  D +S   G+
Sbjct: 92  ADVNAKDATGITPLYLAAYWG----HLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDIGN 146
Query: 125 AKLRELL 131
             L E+L
Sbjct: 147 EDLAEIL 153

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A Y   EIV+ LL+       ++ A ++ G TPLH+AA  G  E  ++LL HGA
Sbjct: 49  TPLHLAATYGHLEIVEVLLKH----GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + A    G TPLHL+            V+ LL++ AD +A+D  GKT  D +S   G+ 
Sbjct: 105 DVNAVDTWGDTPLHLAAIMG----HLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
            L E+L
Sbjct: 160 DLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A Y   EIV+ LL+       ++ A ++ G TPLH+AA  G  E  ++LL HGA
Sbjct: 49  TPLHLAATYGHLEIVEVLLKH----GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + A    G TPLHL+            V+ LL++ AD +A+D  GKT  D +S   G+ 
Sbjct: 105 DVNAVDTWGDTPLHLAAIMG----HLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
            L E+L
Sbjct: 160 DLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 9/126 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A     EIV+ LL+       ++ A++  G TPLH+AA+ G  E  ++LL  GA
Sbjct: 49  TPLHLAAREGHLEIVEVLLKAG----ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + AK  +G TPLHL+     R      V+ LL+  AD +A+D  GKT  D +S   G+ 
Sbjct: 105 DVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
            L E+L
Sbjct: 160 DLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
             TPLH++A     EIV+ LL+       ++ A++  G TPLH+AA NG  E  ++LL +
Sbjct: 47  GSTPLHLAAWIGHPEIVEVLLK----HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           GA + A+   G+TPLHL+            V+ LL++ AD +A+D  GKT  D +S   G
Sbjct: 103 GADVNAQDAYGLTPLHLAA----DRGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNG 157
Query: 124 SAKLRELL 131
           +  L E+L
Sbjct: 158 NEDLAEIL 165

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A     EIV+ LL+       +++A ++YG TPLH+AA  G  E  ++LL +GA
Sbjct: 49  TPLHLAAVSGHLEIVEVLLKH----GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
            + A    G TPLHL+            V+ LL+Y AD +A+D  GKT  D
Sbjct: 105 DVNAFDMTGSTPLHLAA----DEGHLEIVEVLLKYGADVNAQDKFGKTAFD 151

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 48  AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
           AA+ G ++  ++L+A+GA + A  N G+TPLHL+      S     V+ LL++ AD  A 
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAV----SGHLEIVEVLLKHGADVDAA 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
           D  G TPL HL+   G  ++ E+LL +  +
Sbjct: 77  DVYGFTPL-HLAAMTGHLEIVEVLLKYGAD 105

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++A   + EIV+ LL+    +  ++ A +  G TPLH+AA +G  E  ++LL HGA
Sbjct: 41  TPLHLAAANGQLEIVEVLLK----NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + A    G TPLHL+      S     V+ LL++ AD +A+D  G T  D +S   G  
Sbjct: 97  DVNAYDRAGWTPLHLAAL----SGQLEIVEVLLKHGADVNAQDALGLTAFD-ISINQGQE 151
Query: 126 KLRELL 131
            L E+L
Sbjct: 152 DLAEIL 157

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH +AGYN+  +V+ LL+       ++ A++  G  PLH A   G  E A+LL+ HGA
Sbjct: 48  TPLHFAAGYNRVSVVEYLLQH----GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 103
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
            +        TPLH     +     Y   K LL++ AD + K+ +G TPLD + +G
Sbjct: 104 VVNVADLWKFTPLH----EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 155

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH +AGYN+  +V+ LL+       ++ A++  G  PLH A   G  E A+LL+ HGA
Sbjct: 44  TPLHFAAGYNRVSVVEYLLQH----GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
            +        TPLH     +     Y   K LL++ AD + K+ +G TPLD + +G
Sbjct: 100 VVNVADLWKFTPLH----EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH++A     EIV+ LL+       ++ A +  G+TPLH+AA  G  E  ++LL +G
Sbjct: 48  KTPLHLAAIKGHLEIVEVLLKHG----ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + A    G TPLHL+      +     V+ LL+Y AD +A+D  GKT  D +S   G+
Sbjct: 104 ADVNATDTYGFTPLHLAA----DAGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISIDNGN 158
Query: 125 AKLRELL 131
             L E+L
Sbjct: 159 EDLAEIL 165

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH +AGYN+  +V+ LL+       ++ A++  G  PLH A   G  E A+LL+ HGA
Sbjct: 46  TPLHFAAGYNRVSVVEYLLQH----GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
            +        TPLH     +     Y   K LL++ AD + K+ +G TPLD + +G
Sbjct: 102 VVNVADLWKFTPLH----EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 153

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 34/156 (21%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVE---------LEAQ------------------- 37
           TPLH++A  N+ E+ +SLL++ G+   E         L AQ                   
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 38  -NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
            N  G TPLH+ A+ G    A +L+ HG  ++A    G TPLH++  Y     +   VK 
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG----NIKLVKF 329
Query: 97  LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
           LL++ AD +AK   G +PL H +   G   +  LLL
Sbjct: 330 LLQHQADVNAKTKLGYSPL-HQAAQQGHTDIVTLLL 364

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 13/128 (10%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH+       EI++ LL++      ++ A +  G TPLH+AA  G  E  ++LL +GA
Sbjct: 49  TPLHLVVNNGHLEIIEVLLKYA----ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 66  FIEAKANNGMTPLHLSVWYSIRSED--YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
            + A    G TPLHL+      +ED     V+ LL+Y AD +A+D  GKT  D +S   G
Sbjct: 105 DVNAMDYQGYTPLHLA------AEDGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISIDNG 157
Query: 124 SAKLRELL 131
           +  L E+L
Sbjct: 158 NEDLAEIL 165

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 33  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
           ++ A + +G TPLH+AA  G  E  ++LL +GA + A  N G TPLHL+ W    ++   
Sbjct: 39  DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW----ADHLE 94
Query: 93  TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
            V+ LL++ AD +A+D  GKT  D +S   G+  L E+L
Sbjct: 95  IVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 33  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
           ++ A +  G TPLH+AAK G  E  ++LL HGA + A  + G TPLHL+           
Sbjct: 39  DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVG----HLE 94
Query: 93  TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
            V+ LLEY AD +A+D  GKT  D +S   G+  L E+L
Sbjct: 95  IVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 33  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
           ++ A +  G TPLH+AAK G  E  ++LL HGA + A+   G TPLHL+           
Sbjct: 39  DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVG----HLE 94
Query: 93  TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
            V+ LLEY AD +A+D  GKT  D +S   G+  L E+L
Sbjct: 95  IVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 33  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
           ++ A +  G TPLH+AAK G  E  ++LL HGA + A    G TPLHL+           
Sbjct: 39  DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVG----HLE 94
Query: 93  TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
            V+ LLEY AD +A+D  GKT  D +S   G+  L E+L
Sbjct: 95  IVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
             TPLH +A    AE VK LL        ++ A++  G TPLH+AAKNG  E  KLLLA 
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
           GA + A++ +G TP HL+     ++  +  VK L    AD +A+
Sbjct: 65  GADVNARSKDGNTPEHLAK----KNGHHEIVKLLDAKGADVNAR 104

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
           G TPLH AAKNG  E  K LL+ GA + A++ +G TPLHL+     ++     VK LL  
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA----KNGHAEIVKLLLAK 64
Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
            AD +A+  +G TP +HL+   G  ++ +LL
Sbjct: 65  GADVNARSKDGNTP-EHLAKKNGHHEIVKLL 94

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 33  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
           ++ A +  G TPLH+AA     E  ++LL HGA + A  N+G TPLHL+  +        
Sbjct: 39  DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG----HLE 94
Query: 93  TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
            V+ LL++ AD +A+D  GKT  D +S   G+  L E+L
Sbjct: 95  IVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 33  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
           ++ A++  G TPLH+AA NG  E  ++LL +GA + A  + GMTPL L+  +        
Sbjct: 39  DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG----HLE 94
Query: 93  TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
            V+ LL+  AD +A D EG TPL HL+   G  ++ E+LL
Sbjct: 95  IVEVLLKNGADVNANDMEGHTPL-HLAAMFGHLEIVEVLL 133

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 2   QMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 59
           Q ++T LH +      EIV+ LL+   P NDK +       G +PLH+AA  G +E  K 
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD------AGWSPLHIAASAGXDEIVKA 91
Query: 60  LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119
           LL  GA + A   NG TPLH    Y+     +     LLE  A+  AKD+   T + H +
Sbjct: 92  LLVKGAHVNAVNQNGCTPLH----YAASKNRHEIAVMLLEGGANPDAKDHYDATAM-HRA 146
Query: 120 NGPGSAKLRELLLWH 134
              G+ K+  +LL++
Sbjct: 147 AAKGNLKMVHILLFY 161

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 2   QMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 59
           Q ++T LH +      EIV+ LL+   P NDK +       G +PLH+AA  G +E  K 
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD------AGWSPLHIAASAGRDEIVKA 91
Query: 60  LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119
           LL  GA + A   NG TPLH    Y+     +     LLE  A+  AKD+   T + H +
Sbjct: 92  LLVKGAHVNAVNQNGCTPLH----YAASKNRHEIAVMLLEGGANPDAKDHYDATAM-HRA 146
Query: 120 NGPGSAKLRELLLWH 134
              G+ K+  +LL++
Sbjct: 147 AAKGNLKMVHILLFY 161

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
           G TPLH+AA+ G  E  ++LL +GA + A+ N G+TPLHL+   +IR      V+ LL++
Sbjct: 47  GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLA---AIRGH-LEIVEVLLKH 102
Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
            AD +A+D  GKT  D +S   G+  L E+L
Sbjct: 103 GADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 2   QMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 59
           Q ++T LH +      EIV+ LL+   P NDK +       G +PLH+AA  G +E  K 
Sbjct: 38  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA------GWSPLHIAASAGRDEIVKA 91
Query: 60  LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119
           LL  GA + A   NG TPLH    Y+     +     LLE  A+  AKD+   T + H +
Sbjct: 92  LLGKGAQVNAVNQNGCTPLH----YAASKNRHEIAVMLLEGGANPDAKDHYEATAM-HRA 146
Query: 120 NGPGSAKLRELLLWH 134
              G+ K+  +LL++
Sbjct: 147 AAKGNLKMIHILLYY 161

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 2   QMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 59
           Q ++T LH +      EIV+ LL+   P NDK +       G +PLH+AA  G +E  K 
Sbjct: 39  QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA------GWSPLHIAASAGRDEIVKA 92
Query: 60  LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119
           LL  GA + A   NG TPLH    Y+     +     LLE  A+  AKD+   T + H +
Sbjct: 93  LLGKGAQVNAVNQNGCTPLH----YAASKNRHEIAVMLLEGGANPDAKDHYEATAM-HRA 147
Query: 120 NGPGSAKLRELLLWH 134
              G+ K+  +LL++
Sbjct: 148 AAKGNLKMIHILLYY 162

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 33  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
           ++ A++ YG TPL++A  +G  E  ++LL +GA + A    G TPLHL+ +         
Sbjct: 39  DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG----HLE 94
Query: 93  TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
             + LL++ AD +A+D  GKT  D +S G G+  L E+L
Sbjct: 95  IAEVLLKHGADVNAQDKFGKTAFD-ISIGNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 33  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
           ++ A++  G TPLH+AA N   E  ++LL +GA + A    G TPLHL   Y        
Sbjct: 39  DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG----HLE 94
Query: 93  TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
            V+ LL++ AD +A+D  GKT  D +S   G+  L E+L
Sbjct: 95  IVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 16/142 (11%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH++AGYN+  IV+ LL+  G D   + A++  G  PLH A   G  E  +LLL HGA
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQH-GAD---VHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + A      TPLH +   + R E       LL + AD +  +  GK+ +D ++  P   
Sbjct: 116 CVNAMDLWQFTPLHEAASKN-RVE---VCSLLLSHGADPTLVNCHGKSAVD-MAPTP--- 167
Query: 126 KLRELLLW----HSEEQRKRRA 143
           +LRE L +    HS  Q  R A
Sbjct: 168 ELRERLTYEFKGHSLLQAAREA 189

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 2   QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
           Q   +PLHV+A + +A+++  LL+   N      A+N     PLH+A + G  +  K LL
Sbjct: 84  QDGSSPLHVAALHGRADLIPLLLKHGANAG----ARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 62  AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
              A    K  +G TPL     Y+     +  V  LL++ A  +A +N+G T L H +  
Sbjct: 140 DSNAKPNKKDLSGNTPL----IYACSGGHHELVALLLQHGASINASNNKGNTAL-HEAVI 194
Query: 122 PGSAKLRELLLWHSEE-----QRKRRALEACSETKAKMDEL 157
                + ELLL H        +R+R A++ C+E  +K+ EL
Sbjct: 195 EKHVFVVELLLLHGASVQVLNKRQRTAVD-CAEQNSKIMEL 234

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           QT  H++  +     +++LL+      ++LEA+N  G T LH+A    C E  +LLL  G
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139
Query: 65  AFIEA-KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           A I+A    +G +PL     +++ +   + V+ LL++ A+ +A+   G + L H ++G G
Sbjct: 140 ADIDAVDIKSGRSPL----IHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL-HSASGRG 194

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 48  AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
           AA+ G ++  ++L+A+GA + AK  NG TPLHL+     R+     VK LLE  AD +A+
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA----RNGHLEVVKLLLEAGADVNAQ 68
Query: 108 DNEGKTPLDHLSNGPGSAKLRELL 131
           D  GKT  D +S   G+  L E+L
Sbjct: 69  DKFGKTAFD-ISIDNGNEDLAEIL 91

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           +  +PLH++A Y      + LL       V  +A+     TPLHMAA  G     ++LL 
Sbjct: 33  LGTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
           HGA + AK    MT LH    ++        V+ L++Y AD   +    KT  D +S   
Sbjct: 89  HGADVNAKDMLKMTALH----WATEHNHQEVVELLIKYGADVHTQSKFCKTAFD-ISIDN 143
Query: 123 GSAKLRELL 131
           G+  L E+L
Sbjct: 144 GNEDLAEIL 152

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 48  AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
           AA+ G ++  ++L+A+GA + AK  NG TPLHL+     R+     VK LLE  AD  A+
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA----RNGHLEVVKLLLEAGADVXAQ 86
Query: 108 DNEGKTPLDHLSNGPGSAKLRELL 131
           D  GKT  D +S   G+  L E+L
Sbjct: 87  DKFGKTAFD-ISIDNGNEDLAEIL 109

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 37  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
           Q+  G +P+H AA+ G  +  K+L+ HGA + A  + G  P+HL++      E +++V +
Sbjct: 70  QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR-----EGHSSVVS 124
Query: 97  LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            L   +D   +D  G TPL+ L+   G+  L ++L  H
Sbjct: 125 FLAPESDLHHRDASGLTPLE-LARQRGAQNLMDILQGH 161

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 37  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
           Q+  G +P+H AA+ G  +  K+L+ HGA + A  + G  P+HL++      E +++V +
Sbjct: 72  QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR-----EGHSSVVS 126
Query: 97  LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            L   +D   +D  G TPL+ L+   G+  L ++L  H
Sbjct: 127 FLAPESDLHHRDASGLTPLE-LARQRGAQNLMDILQGH 163

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 37  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
           Q+  G +P+H AA+ G  +  K+L+ HGA +      G  P+HL+V      E +  V +
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ-----EGHTAVVS 118
Query: 97  LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            L   +D   +D  G TPL+ L+   G+  L ++L  H
Sbjct: 119 FLAAESDLHRRDARGLTPLE-LALQRGAQDLVDILQGH 155

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 37  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
           Q+  G +P+H AA+ G  +  K+L+ HGA +      G  P+HL+V      E +  V +
Sbjct: 70  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ-----EGHTAVVS 124
Query: 97  LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            L   +D   +D  G TPL+ L+   G+  L ++L  H
Sbjct: 125 FLAAESDLHRRDARGLTPLE-LALQRGAQDLVDILQGH 161

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 48  AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
           AA+ G ++  ++L+A+GA + AK  +G TPLHL+     R      V+ LL+  AD +A+
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAQ 64
Query: 108 DNEGKTPLDHLSNGPGSAKLRELL 131
           D  GKT  D +S   G+  L E+L
Sbjct: 65  DKFGKTAFD-ISIDNGNEDLAEIL 87

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH++A Y++++  K LLE   +  +    Q+  G TPLH A         ++LL + 
Sbjct: 23  ETALHLAARYSRSDAAKRLLEASADAXI----QDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 65  AF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A  ++A+ ++G TPL L+   ++       ++ L+  +AD +A D+ GK+ L
Sbjct: 79  ATDLDARMHDGTTPLILAARLALE----GMLEDLINSHADVNAVDDLGKSAL 126

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           T LH++A Y++++  K LLE   +  +    Q+  G TPLH A         ++L+ + A
Sbjct: 59  TALHLAAAYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 66  F-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
             ++A+ ++G TPL L+   ++       ++ L+  +AD +A D+ GK+ L
Sbjct: 115 TDLDARMHDGTTPLILAARLAVE----GMLEDLINSHADVNAVDDLGKSAL 161

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 26  WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 85
           W  N + +L   + +G +PLH A + G +   ++L+  GA I        TPLHL+  + 
Sbjct: 24  WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83
Query: 86  IRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
            R      V+ LL+Y AD +A +  G  PL +
Sbjct: 84  HRD----IVQKLLQYKADINAVNEHGNVPLHY 111

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 26  WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 85
           W  N + +L   + +G +PLH A + G +   ++L+  GA I        TPLHL+  + 
Sbjct: 19  WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 78
Query: 86  IRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
            R      V+ LL+Y AD +A +  G  PL +
Sbjct: 79  HRD----IVQKLLQYKADINAVNEHGNVPLHY 106

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH++A Y++++  K LLE   +  +    Q+  G TPLH A         ++L+ + 
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 65  AF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A  ++A+ ++G TPL L+   ++       ++ L+  +AD +A D+ GK+ L
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVE----GMLEDLINSHADVNAVDDLGKSAL 161

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH++A Y++++  K LLE   +  +    Q+  G TPLH A         ++L+ + 
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 65  AF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A  ++A+ ++G TPL L+   ++       ++ L+  +AD +A D+ GK+ L
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVE----GMLEDLINSHADVNAVDDLGKSAL 129

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPL  ++ + + E V+ LLEW  +  +  + +    E+ L +A+  G  +   LLL    
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKER----ESALSLASTGGYTDIVGLLLERDV 93
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            I     NG TPL     Y++R      V+ LL   AD + + + G TP+D L+   G  
Sbjct: 94  DINIYDWNGGTPL----LYAVRGNHVKCVEALLARGADLTTEADSGYTPMD-LAVALGYR 148
Query: 126 KLRELL 131
           K+++++
Sbjct: 149 KVQQVI 154

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 2   QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
           +  +T LH++A Y++++  K LLE   +  +    Q+  G TPLH A         ++L+
Sbjct: 56  RTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILI 111
Query: 62  AHGAF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
            + A  ++A+ ++G TPL L+   ++       ++ L+  +AD +A D+ GK+ L
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVE----GMLEDLINSHADVNAVDDLGKSAL 162

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 40  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
           +G T L +  K G  E A+ LL  GA  + K   G   +H     + R+    T++TLLE
Sbjct: 37  FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIH----DAARAGQLDTLQTLLE 91
Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE---QRKRRALEAC 147
           + AD + +DNEG  PL HL+   G  ++ E L+ H+      R  +   AC
Sbjct: 92  FQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TP+  +  Y   ++VK LL    +  +    +N+     LH AA +GC + A++LLA   
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC----LHWAAFSGCVDIAEILLAAKC 168
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
            + A   +G +PLH++     R   Y  V   L  ++D + K+ EG+TPL
Sbjct: 169 DLHAVNIHGDSPLHIAA----RENRYDCVVLFLSRDSDVTLKNKEGETPL 214

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           + QTPLH++   N+ EI ++LL   G D    E ++  G TPLH+A + GC  +  +L  
Sbjct: 44  LQQTPLHLAVITNQPEIAEALL-GAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 63  HG------AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPL 115
                   + ++A   NG T LHL+  +         V+ L+   AD +A++   G+T L
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGY----LGIVELLVSLGADVNAQEPCNGRTAL 155
Query: 116 DHLSNGPGSAKLRELLL 132
            HL+    +  L  LLL
Sbjct: 156 -HLAVDLQNPDLVSLLL 171

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-GETPLHMAAKNGCNEAAKLLL 61
           M +T LH++A Y+  E    L+E       E     +Y G+T LH+A  N      + LL
Sbjct: 36  MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL 95
Query: 62  AHGAFIEAKANNGMTPL--HLSVWYSIRSEDYAT-------VKTLLEYNADCSAKDNEGK 112
           A GA + A+A   +     H  ++Y      +A        V+ L+E+ AD  A+D+ G 
Sbjct: 96  ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN 155
Query: 113 TPLDHLSNGP 122
           T L  L   P
Sbjct: 156 TVLHILILQP 165

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Query: 31  KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI-EAKANNGMTPLHLSVWYSIRSE 89
           +++LEA+N  G TPLH+A  +   E  +LL   GA + + +   G TPLHL+V     ++
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV----EAQ 203
Query: 90  DYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 128
             + ++ LL+  AD +A+   G+TPL       GSA LR
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPL-------GSALLR 235

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Query: 31  KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI-EAKANNGMTPLHLSVWYSIRSE 89
           +++LEA+N  G TPLH+A  +   E  +LL   GA + + +   G TPLHL+V     ++
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV----EAQ 203
Query: 90  DYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 128
             + ++ LL+  AD +A+   G+TPL       GSA LR
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPL-------GSALLR 235

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           + QTPLH++   N+ EI ++LL   G D    E ++  G TPLH+A + GC  +  +L  
Sbjct: 41  LQQTPLHLAVITNQPEIAEALL-GAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQ 96
Query: 63  HG------AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPL 115
                   + ++A   NG T LHL+  +         V+ L+   AD +A++   G+T L
Sbjct: 97  SCTTPHLHSILKATNYNGHTCLHLASIHGY----LGIVELLVSLGADVNAQEPCNGRTAL 152
Query: 116 DHLSNGPGSAKLRELLL 132
            HL+    +  L  LLL
Sbjct: 153 -HLAVDLQNPDLVSLLL 168

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPL  ++ + + E V+ LLEW  +  +  + +    E+ L +A+  G  +   LLL    
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADPHILAKER----ESALSLASTGGYTDIVGLLLERDV 93
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            I     NG TPL     Y++       V+ LL   AD + + + G TP+D L+   G  
Sbjct: 94  DINIYDWNGGTPL----LYAVHGNHVKCVEALLARGADLTTEADSGYTPMD-LAVALGYR 148
Query: 126 KLRELL 131
           K+++++
Sbjct: 149 KVQQVI 154

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 40  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
           +G T L +  K G  E A+ LL  GA  + K   G   +H     + R+    T++TLLE
Sbjct: 37  FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIH----DAARAGFLDTLQTLLE 91
Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE---QRKRRALEAC 147
           + AD + +DNEG  PL HL+   G  ++ E L+ H+      R  +   AC
Sbjct: 92  FQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 40  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
           +G T L +  K G  E A+ LL  GA  + K   G   +H     + R+    T++TLLE
Sbjct: 37  FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIH----DAARAGFLDTLQTLLE 91
Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE---QRKRRALEAC 147
           + AD + +DNEG  PL HL+   G  ++ E L+ H+      R  +   AC
Sbjct: 92  FQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
             T L  +   N+  I + LL    N    +  ++  G+TPL  +   G +E +  LL H
Sbjct: 68  GSTALIWAVKNNRLGIAEKLLSKGSN----VNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 113
           GA +  +   G TPL ++  Y  RSE    VK LLE  AD SA+D  G T
Sbjct: 124 GANVNDRNLEGETPLIVASKYG-RSE---IVKKLLELGADISARDLTGLT 169

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
           E E E  N VG  ++   + QL +  + + L  R  AL   +G + P  +   G PGTGK
Sbjct: 192 EDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
           T++AR +    G   ++           +   +++ +  G +    R+  +EAE     I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
           +F+DE   + P ++    +     + +++++MDG K    V++ A  + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 40  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
           +G T L +  K G  E A+ LL  GA  + K   G   +H     + R+    T++TLLE
Sbjct: 37  FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGNAVIH----DAARAGFLDTLQTLLE 91
Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE---QRKRRALEAC 147
           + AD + +DNEG  PL HL+   G  ++ E L+ H+      R  +   AC
Sbjct: 92  FQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLH +       +V  L+++ G D   ++ +   G + +H+AA+ G       L+A G 
Sbjct: 78  TPLHWATRQGHLSMVVQLMKY-GADPSLIDGE---GCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            ++    NGMTPL   +W + R+      + LL +N   +  D   K    H +   G+ 
Sbjct: 134 DVDMMDQNGMTPL---MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 126 KLRELLL 132
            +  LLL
Sbjct: 191 TVISLLL 197

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 40  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
           +G T L +  K G  E A+ LL  GA  + K   G   +H     + R+    T++TLLE
Sbjct: 37  FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIH----DAARAGFLDTLQTLLE 91
Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE---QRKRRALEAC 147
             AD + +DNEG  PL HL+   G  ++ E L+ H+      R  +   AC
Sbjct: 92  NQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TP H++      E+VKSL + P   K +L      G T LH+A      E ++ L+ +GA
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-----NADCSAKDNEGKTPLDH-LS 119
            +  K      PLH       R+    ++K L+E       +  + +D +G TPL H L+
Sbjct: 132 SVRIKDKFNQIPLH-------RAASVGSLK-LIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 120 NGPGSA 125
            G G A
Sbjct: 184 EGHGDA 189

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TP H++      E+VKSL + P   K +L      G T LH+A      E ++ L+ +GA
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-----NADCSAKDNEGKTPLDH-LS 119
            +  K      PLH       R+    ++K L+E       +  + +D +G TPL H L+
Sbjct: 132 SVRIKDKFNQIPLH-------RAASVGSLK-LIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 120 NGPGSA 125
            G G A
Sbjct: 184 EGHGDA 189

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TP H++      E+VKSL + P   K +L      G T LH+A      E ++ L+ +GA
Sbjct: 74  TPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-----NADCSAKDNEGKTPLDH-LS 119
            +  K      PLH       R+    ++K L+E       +  + +D +G TPL H L+
Sbjct: 132 SVRIKDKFNQIPLH-------RAASVGSLK-LIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 120 NGPGSA 125
            G G A
Sbjct: 184 EGHGDA 189

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH +   +   + + LL    N    L A+   G TPL +AA+       + L+   
Sbjct: 85  RTPLHAAVAADAMGVFQILLR---NRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 141
Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A I A  N+G T LH   W +  +   A V  LL ++A+  A+D++ +TPL
Sbjct: 142 ADINAADNSGKTALH---WAAAVNNTEA-VNILLMHHANRDAQDDKDETPL 188

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           ++ +P   +    + EI+  +L+    D   L   N YG   L  AA+ G  +  KLLL 
Sbjct: 71  ISDSPYLYAGAQGRTEILAYMLKHATPD---LNKHNRYGGNALIPAAEKGHIDNVKLLLE 127
Query: 63  HG-AFIEAKANNGMTPLHLSVWYSIRSEDYA-TVKTLLEYNADCSAKDNEGKTPLDHLSN 120
            G   I+ + + G T L  +V     ++ Y   VK L+E  AD S KDN G+T +D+ +N
Sbjct: 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY-AN 186
Query: 121 GPGSAKLRELLLWHS 135
             G  ++ ++L  ++
Sbjct: 187 QKGYTEISKILAQYN 201

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	438
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	6e-59
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-33
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-30
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-30
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-29
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-30
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-30
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-30
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-24
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-28
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-30
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-29
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-30
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-30
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-30
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-29
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-26
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-28
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-23
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-29
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-29
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-27
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-26
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-26
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-13
2rfa_A	232	Transient receptor potential cation channel subfa	3e-27
2rfa_A	232	Transient receptor potential cation channel subfa	2e-26
2rfa_A	232	Transient receptor potential cation channel subfa	4e-24
2rfa_A	232	Transient receptor potential cation channel subfa	1e-21
2rfa_A	232	Transient receptor potential cation channel subfa	3e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-24
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-18
2etb_A	256	Transient receptor potential cation channel subfam	5e-23
2etb_A	256	Transient receptor potential cation channel subfam	1e-19
2etb_A	256	Transient receptor potential cation channel subfam	1e-14
2etb_A	256	Transient receptor potential cation channel subfam	2e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-21
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-12
2pnn_A	273	Transient receptor potential cation channel subfa	8e-21
2pnn_A	273	Transient receptor potential cation channel subfa	2e-17
2pnn_A	273	Transient receptor potential cation channel subfa	3e-16
2pnn_A	273	Transient receptor potential cation channel subfa	4e-12
2pnn_A	273	Transient receptor potential cation channel subfa	4e-11
2pnn_A	273	Transient receptor potential cation channel subfa	9e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-20
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	3e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-06
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	1e-04
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	2e-04
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	2e-04
2chg_A	226	Replication factor C small subunit; DNA-binding pr	3e-04
2chq_A	319	Replication factor C small subunit; DNA-binding pr	5e-04
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	5e-04

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score =  194 bits (494), Expect = 6e-59
 Identities = 102/293 (34%), Positives = 149/293 (50%), Gaps = 23/293 (7%)

Query: 142 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH 201
           RA    S  K  ++EL+ EL   +GL  +K ++R+ A  +L++  R+ LGL        H
Sbjct: 14  RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLH 69

Query: 202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA 261
           M+F GNPGTGKT VA  +  LL+ +G +    +  V R DLVG+++GHT PKT+  +K A
Sbjct: 70  MSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA 129

Query: 262 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD--GGKVVVIFAGYSEPMKRVIAS 319
            GG+LF+DEAY L         DYG EA+E ++ VM+     +VVI AGY++ M+    S
Sbjct: 130 MGGVLFIDEAYYLYRPDNER--DYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQS 187

Query: 320 NEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 379
           N GF  R+     F D++ EEL +I    +++Q           +   + +A  AL    
Sbjct: 188 NPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ-----------NYQMTPEAETALRAYI 236

Query: 380 TTEKQRREM-NGGLVDPMLVNARENLDLRL---SFDCLDTDELRTITLEDLEA 428
              + +    N   +   L  AR     RL   S   LD   L TI  ED+ A
Sbjct: 237 GLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRA 289

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  119 bits (302), Expect = 8e-33
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH+++       V+ LL+  G+D      ++  G TPLH A  +G  +  +LLL H 
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQ-NGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHK 66

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A +        +PLH +        D   VK LL Y A  +A +  G  P+   ++    
Sbjct: 67  ALVNTTGYQNDSPLHDAAKNG--HVD--IVKLLLSYGASRNAVNIFGLRPV-DYTDDESM 121

Query: 125 AKLRELLLWH 134
             L  L   +
Sbjct: 122 KSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 91.3 bits (228), Expect = 2e-22
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 36  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 95
             N  GET LH+A+  G   + + LL +G+    K + G TPLH +  +         V+
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG----HLKVVE 60

Query: 96  TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            LL++ A  +    +  +PL H +   G   + +LLL +
Sbjct: 61  LLLQHKALVNTTGYQNDSPL-HDAAKNGHVDIVKLLLSY 98

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 65.1 bits (160), Expect = 5e-13
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            +PLH +A     +IVK LL + G  +    A N++G  P+             L   + 
Sbjct: 77  DSPLHDAAKNGHVDIVKLLLSY-GASR---NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

Query: 65  A 65
           +
Sbjct: 133 S 133

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  119 bits (302), Expect = 3e-32
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            +PLH +    ++ +V+ L+         +   N   +TPLH+AA +G  +  + LL + 
Sbjct: 40  FSPLHWACREGRSAVVEMLIMR----GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 95

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A I A   +G  PLH + ++    +     + L+   A  S  +  G+ P+   +  P  
Sbjct: 96  ADINAVNEHGNVPLHYACFWG--QDQ--VAEDLVANGALVSICNKYGEMPV-DKAKAPLR 150

Query: 125 AKLRELLLWH 134
             LRE     
Sbjct: 151 ELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  115 bits (292), Expect = 7e-31
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              +        A  V+  L+   ND   L   + +G +PLH A + G +   ++L+  G
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTEND---LNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A I        TPLHL+  +     D   V+ LL+Y AD +A +  G  PL H +   G 
Sbjct: 63  ARINVMNRGDDTPLHLAASHG--HRD--IVQKLLQYKADINAVNEHGNVPL-HYACFWGQ 117

Query: 125 AKLRELLLWH 134
            ++ E L+ +
Sbjct: 118 DQVAEDLVAN 127

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 84.4 bits (210), Expect = 2e-19
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
               +    + G   A +L L +    +    ++G +PLH +     RS     V+ L+ 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREG-RSA---VVEMLIM 60

Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
             A  +  +    TPL HL+   G   + + LL +
Sbjct: 61  RGARINVMNRGDDTPL-HLAASHGHRDIVQKLLQY 94

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 68.2 bits (168), Expect = 1e-13
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
             PLH +  + + ++ + L+     +   +   N YGE P+  A         +     G
Sbjct: 106 NVPLHYACFWGQDQVAEDLVA----NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

Query: 65  AFIEAKANNGMTPLHLSVW 83
             +         P   + W
Sbjct: 162 QNLNR------IPYKDTFW 174

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.4 bits (101), Expect = 7e-05
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 72  NNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPLDHLSNGPGSAKLREL 130
              M  +           +   V+  L+    D +  D+ G +PL H +   G + + E+
Sbjct: 3   PEFMDDIFTQCREG----NAVAVRLWLDNTENDLNQGDDHGFSPL-HWACREGRSAVVEM 57

Query: 131 LLWH 134
           L+  
Sbjct: 58  LIMR 61

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  116 bits (294), Expect = 2e-31
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            +PLH++A Y      + LL       V  +A+     TPLHMAA  G     ++LL HG
Sbjct: 35  TSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG 90

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + AK    MT LH +  ++   ++   V+ L++Y AD   +    KT    +S   G+
Sbjct: 91  ADVNAKDMLKMTALHWATEHN--HQE--VVELLIKYGADVHTQSKFCKTAF-DISIDNGN 145

Query: 125 AKLRELL 131
             L E+L
Sbjct: 146 EDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  109 bits (275), Expect = 1e-28
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 10/130 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              L  +A   + + V+ L+             +  G +PLH+AA+ G     ++LL  G
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAP-----FTTDWLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
              +A+     TPLH++        +   V+ LL++ AD +AKD    T L H +     
Sbjct: 58  VSRDARTKVDRTPLHMAASEG--HAN--IVEVLLKHGADVNAKDMLKMTAL-HWATEHNH 112

Query: 125 AKLRELLLWH 134
            ++ ELL+ +
Sbjct: 113 QEVVELLIKY 122

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 84.7 bits (211), Expect = 7e-20
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
               L  AA+ G ++  ++L+A+GA        G +PLHL+  Y        T + LL  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQY--GHFS--TTEVLLRA 56

Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
                A+    +TPL H++   G A + E+LL H
Sbjct: 57  GVSRDARTKVDRTPL-HMAASEGHANIVEVLLKH 89

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  114 bits (289), Expect = 3e-31
 Identities = 45/113 (39%), Positives = 57/113 (50%), Gaps = 8/113 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH +A    AE VK LL   G D     A++  G TPLH+AAKNG  E  KLLLA G
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLS-KGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
           A + A++ +G TP HL+        +   VK L    AD +A+         H
Sbjct: 66  ADVNARSKDGNTPEHLAKKNG--HHE--IVKLLDAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 89.7 bits (224), Expect = 5e-22
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 38  NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 97
           +  G TPLH AAKNG  E  K LL+ GA + A++ +G TPLHL+        +   VK L
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG--HAE--IVKLL 61

Query: 98  LEYNADCSAKDNEGKTPL 115
           L   AD +A+  +G TP 
Sbjct: 62  LAKGADVNARSKDGNTPE 79

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 7/71 (9%)

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           G      + +G TPLH +        +   VK LL   AD +A+  +G TPL HL+   G
Sbjct: 1   GHMW--GSKDGNTPLHNAAKNG--HAE--EVKKLLSKGADVNARSKDGNTPL-HLAAKNG 53

Query: 124 SAKLRELLLWH 134
            A++ +LLL  
Sbjct: 54  HAEIVKLLLAK 64

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  116 bits (293), Expect = 4e-31
 Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH +AGYN+  +V+ LL+       ++ A++  G  PLH A   G  E A+LL+ HG
Sbjct: 43  STPLHFAAGYNRVSVVEYLLQ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A +        TPLH +        +    K LL++ AD + K+ +G TPLD + +  G 
Sbjct: 99  AVVNVADLWKFTPLHEAAAKG--KYE--ICKLLLQHGADPTKKNRDGNTPLDLVKD--GD 152

Query: 125 AKLRELLLWH 134
             +++LL   
Sbjct: 153 TDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  113 bits (285), Expect = 6e-30
 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 8/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              L  +A     E VK L      +            TPLH AA        + LL HG
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNC---RDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + AK   G+ PLH +  Y      Y   + L+++ A  +  D    TPL H +   G 
Sbjct: 66  ADVHAKDKGGLVPLHNACSYG----HYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGK 120

Query: 125 AKLRELLLWH 134
            ++ +LLL H
Sbjct: 121 YEICKLLLQH 130

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 87.8 bits (219), Expect = 8e-21
 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 38  NMYGETPLHMAAKNGCNEAAKLLL-AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
           N   +  L  AAK G  E  K L                TPLH +  Y         V+ 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY--NRVS--VVEY 60

Query: 97  LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           LL++ AD  AKD  G  PL H +   G  ++ ELL+ H
Sbjct: 61  LLQHGADVHAKDKGGLVPL-HNACSYGHYEVAELLVKH 97

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 60.1 bits (147), Expect = 4e-11
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH +A   K EI K LL+  G D      +N  G TPL +   +G  +   LL    
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQH-GADP---TKKNRDGNTPLDLVK-DGDTDIQDLLRGDA 163

Query: 65  A 65
           A
Sbjct: 164 A 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  117 bits (295), Expect = 4e-31
 Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            +P   +    + EI+  +L+   +   +L   N YG   L  AA+ G  +  KLLL  G
Sbjct: 73  DSPYLYAGAQGRTEILAYMLK---HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129

Query: 65  -AFIEAKANNGMTPLHLSVWYSIRSEDY-ATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
              I+ + + G T L  +V     ++ Y   VK L+E  AD S KDN G+T +D+ +   
Sbjct: 130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK- 188

Query: 123 GSAKLRELLLWHS 135
           G  ++ ++L  ++
Sbjct: 189 GYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  104 bits (261), Expect = 3e-26
 Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 9/112 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              L  +   +  ++ + L +       +++  +  G TPL++A  N   E AK L+  G
Sbjct: 7   GALLEAANQRDTKKVKEILQD----TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPL 115
           A I  + +   +P   +        +   +  +L++   D +  +  G   L
Sbjct: 63  ADINLQNSISDSPYLYAGAQG--RTE--ILAYMLKHATPDLNKHNRYGGNAL 110

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 87.5 bits (218), Expect = 3e-20
 Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 37  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
           +       L  A +    +  ++L      ++     G TPL+++V       +    K 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN--NDIE--IAKA 57

Query: 97  LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           L++  AD + +++   +P    +   G  ++   +L H
Sbjct: 58  LIDRGADINLQNSISDSPY-LYAGAQGRTEILAYMLKH 94

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  116 bits (294), Expect = 4e-31
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TP   +A     + +  LLE       +++A +  G T L   A  G ++  +LL   G
Sbjct: 45  ETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 99

Query: 65  AFIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           A ++ +    G+T LH++  Y     +   V+ L+E  AD   +D  G T L  L+    
Sbjct: 100 ADLDHRDMRGGLTALHMAAGYV--RPE--VVEALVELGADIEVEDERGLTAL-ELAREIL 154

Query: 124 SAKLRELLLWH 134
               +   +  
Sbjct: 155 KTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 94.1 bits (235), Expect = 7e-23
 Identities = 28/131 (21%), Positives = 42/131 (32%), Gaps = 14/131 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
                +      +            D           ETP   AA+    +A   LL   
Sbjct: 15  AMEYLIEWKDGHSPSWVPSSY-IAADV------VSEYETPWWTAARKADEQALSQLL-ED 66

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE-GKTPLDHLSNGPG 123
             ++A   NG T L         S+    V+ L E  AD   +D   G T L H++ G  
Sbjct: 67  RDVDAVDENGRTALLFVAGLG--SDK--CVRLLAEAGADLDHRDMRGGLTAL-HMAAGYV 121

Query: 124 SAKLRELLLWH 134
             ++ E L+  
Sbjct: 122 RPEVVEALVEL 132

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 93.7 bits (234), Expect = 1e-22
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAH 63
           +T L   AG    + V+ L E       +L+ ++M  G T LHMAA     E  + L+  
Sbjct: 77  RTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 108
           GA IE +   G+T L L+     ++         +++      + 
Sbjct: 133 GADIEVEDERGLTALELAREIL-KTT---PKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.9 bits (167), Expect = 1e-13
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 36  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 95
                G     +  K+G + +        A + ++     TP   +   +    D   + 
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKA----DEQALS 61

Query: 96  TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            LLE + D  A D  G+T L     G GS K   LL   
Sbjct: 62  QLLE-DRDVDAVDENGRTAL-LFVAGLGSDKCVRLLAEA 98

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 20/75 (26%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHM----------------A 48
            T LH++AGY + E+V++L+E       ++E ++  G T L +                 
Sbjct: 111 LTALHMAAGYVRPEVVEALVE----LGADIEVEDERGLTALELAREILKTTPKGNPMQFG 166

Query: 49  AKNGCNEAAKLLLAH 63
            + G  +   +L   
Sbjct: 167 RRIGLEKVINVLEGQ 181

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  117 bits (296), Expect = 8e-31
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLE--WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
            TPLH++        V  L +     +    L+A N  G T LH+A+ +G     +LL++
Sbjct: 79  NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138

Query: 63  HGAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
            GA + A+   NG T LHL+V      ++   V  LL+  AD +    +G +P   L+ G
Sbjct: 139 LGADVNAQEPCNGRTALHLAVDL----QNPDLVSLLLKCGADVNRVTYQGYSPY-QLTWG 193

Query: 122 PGSAKLRELLLWH 134
             S ++++ L   
Sbjct: 194 RPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  105 bits (264), Expect = 3e-26
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            + LH++  + +  +   ++     D   L  QN   +TPLH+A      E A+ LL  G
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS------AKDNEGKTPLDHL 118
              E +   G TPLHL+          A+V  L +            A +  G T L HL
Sbjct: 69  CDPELRDFRGNTPLHLACEQG----CLASVGVLTQSCTTPHLHSILKATNYNGHTCL-HL 123

Query: 119 SNGPGSAKLRELLLWH 134
           ++  G   + ELL+  
Sbjct: 124 ASIHGYLGIVELLVSL 139

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  103 bits (260), Expect = 8e-26
 Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAH 63
            T LH+++ +    IV+ L+        ++ AQ    G T LH+A      +   LLL  
Sbjct: 118 HTCLHLASIHGYLGIVELLVSL----GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
           GA +      G +P  L+             + L +   +      E +    
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRP----STRIQQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 93.4 bits (233), Expect = 4e-22
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 35  EAQNMYGETPLHMAAKNGCNEAA----KLLLAHGAFIEAKANNGMTPLHLSVWYSIRSED 90
           +     G++ LH+A  +          + +    AF+  + N   TPLHL+V       +
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT--NQPE 59

Query: 91  YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEA 146
               + LL    D   +D  G TPL HL+   G      +L            L+A
Sbjct: 60  --IAEALLGAGCDPELRDFRGNTPL-HLACEQGCLASVGVLTQSCTTPHLHSILKA 112

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 4/78 (5%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH++      ++V  LL+       ++      G +P  +          + L    
Sbjct: 152 RTALHLAVDLQNPDLVSLLLK----CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207

Query: 65  AFIEAKANNGMTPLHLSV 82
                             
Sbjct: 208 LENLQMLPESEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 4/53 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAA 57
            +P  ++ G     I + L +    + ++        E       ++   E  
Sbjct: 185 YSPYQLTWGRPSTRIQQQLGQ-LTLENLQ---MLPESEDEESYDTESEFTEFT 233

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  114 bits (289), Expect = 1e-30
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPL  +A + +  +V+ LL+  G D    +      E+ L +A   G  +  K+LL  G
Sbjct: 37  FTPLMWAAAHGQIAVVEFLLQN-GADP---QLLGKGRESALSLACSKGYTDIVKMLLDCG 92

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
             +     NG TPL  +V  +        VK LLE  AD + + + G   +  L+   G 
Sbjct: 93  VDVNEYDWNGGTPLLYAVHGN----HVKCVKMLLESGADPTIETDSGYNSM-DLAVALGY 147

Query: 125 AKLRELLLWH 134
             +++++  H
Sbjct: 148 RSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  112 bits (283), Expect = 1e-29
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              +H  A   +   + + +E     +  +   +  G TPL  AA +G     + LL +G
Sbjct: 4   SLSVHQLAAQGEMLYLATRIE----QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A  +       + L L+        D   VK LL+   D +  D  G TPL
Sbjct: 60  ADPQLLGKGRESALSLACSKG--YTD--IVKMLLDCGVDVNEYDWNGGTPL 106

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  101 bits (254), Expect = 1e-25
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           ++ L ++      +IVK LL+      V++   +  G TPL  A      +  K+LL  G
Sbjct: 70  ESALSLACSKGYTDIVKMLLD----CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE 110
           A    + ++G   + L+V            + +  +         E
Sbjct: 126 ADPTIETDSGYNSMDLAVAL--GYRS--VQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
               +H  A  G        +     I      G TPL  +  +       A V+ LL+ 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHG----QIAVVEFLLQN 58

Query: 101 NADCSAKDNEGKTPL 115
            AD        ++ L
Sbjct: 59  GADPQLLGKGRESAL 73

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.1 bits (103), Expect = 3e-05
 Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 4/43 (9%)

Query: 73  NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
                +H          +   + T +E     +  D EG TPL
Sbjct: 2   ANSLSVHQLA----AQGEMLYLATRIEQENVINHTDEEGFTPL 40

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  116 bits (293), Expect = 2e-30
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 8/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH +   +   + + L+    N   +L+A+   G TPL +AA+       + L+   
Sbjct: 59  RTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + A  + G + LH +   +  + D      LL+  A+   ++N  +TPL  L+   GS
Sbjct: 116 ADVNAVDDLGKSALHWAAAVN--NVD--AAVVLLKNGANKDMQNNREETPL-FLAAREGS 170

Query: 125 AKLRELLLWH 134
            +  ++LL H
Sbjct: 171 YETAKVLLDH 180

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  115 bits (291), Expect = 4e-30
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPL ++A      +++ L+        ++ A +  G++ LH AA     +AA +LL +G
Sbjct: 93  TTPLILAARLAVEGMLEDLIN----SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 148

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A  + + N   TPL L+         Y T K LL++ A+    D+  + P   ++     
Sbjct: 149 ANKDMQNNREETPLFLAAREG----SYETAKVLLDHFANRDITDHMDRLPR-DIAQERMH 203

Query: 125 AKLRELLLWH 134
             +  LL  +
Sbjct: 204 HDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  115 bits (290), Expect = 5e-30
 Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 10/131 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH++A Y++++  K LLE       +   Q+  G TPLH A         ++L+ + 
Sbjct: 26  ETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81

Query: 65  AF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           A  ++A+ ++G TPL L+   +   E    ++ L+  +AD +A D+ GK+ L H +    
Sbjct: 82  ATDLDARMHDGTTPLILAARLA--VEG--MLEDLINSHADVNAVDDLGKSAL-HWAAAVN 136

Query: 124 SAKLRELLLWH 134
           +     +LL +
Sbjct: 137 NVDAAVVLLKN 147

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.8 bits (250), Expect = 2e-24
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           ++ LH +A  N  +    LL+    +    + QN   ETPL +AA+ G  E AK+LL H 
Sbjct: 126 KSALHWAAAVNNVDAAVVLLK----NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 109
           A  +   +    P  ++        D   V+ L EYN   S + +
Sbjct: 182 ANRDITDHMDRLPRDIAQERM--HHD--IVRLLDEYNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 92.5 bits (231), Expect = 6e-22
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 9/121 (7%)

Query: 15  NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG 74
           +   ++   +   G         +  GET LH+AA+   ++AAK LL   A    + N G
Sbjct: 2   DAPAVISDFIY-QGASLHN--QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMG 58

Query: 75  MTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 133
            TPLH +V     ++     + L+   A D  A+ ++G TPL  L+       + E L+ 
Sbjct: 59  RTPLHAAVSA--DAQG--VFQILIRNRATDLDARMHDGTTPL-ILAARLAVEGMLEDLIN 113

Query: 134 H 134
            
Sbjct: 114 S 114

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  114 bits (288), Expect = 2e-30
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPL  ++ + + E V+ LLEW G D           E+ L +A+  G  +   LLL   
Sbjct: 37  FTPLIWASAFGEIETVRFLLEW-GADP---HILAKERESALSLASTGGYTDIVGLLLERD 92

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
             I     NG TPL  +V  +        V+ LL   AD + + + G TP+  L+   G 
Sbjct: 93  VDINIYDWNGGTPLLYAVRGN--HVK--CVEALLARGADLTTEADSGYTPM-DLAVALGY 147

Query: 125 AKLRELLLWH 134
            K+++++  H
Sbjct: 148 RKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  111 bits (280), Expect = 3e-29
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 7/111 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              +H  A   + + +K  L   G++ V     +  G TPL  A+  G  E  + LL  G
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRK-GDNLVN--KPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A     A    + L L+        D   V  LLE + D +  D  G TPL
Sbjct: 60  ADPHILAKERESALSLASTGG--YTD--IVGLLLERDVDINIYDWNGGTPL 106

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  109 bits (276), Expect = 1e-28
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           ++ L +++     +IV  LLE      V++   +  G TPL  A +    +  + LLA G
Sbjct: 70  ESALSLASTGGYTDIVGLLLE----RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP 114
           A +  +A++G TP+ L+V            + +  +       +     P
Sbjct: 126 ADLTTEADSGYTPMDLAVALG--YRK--VQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 79.4 bits (197), Expect = 1e-17
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGA-FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
               +H  A  G  +  K  L  G   +      G TPL  +  +     +  TV+ LLE
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG----EIETVRFLLE 57

Query: 100 YNADCSAKDNEGKTPL 115
           + AD      E ++ L
Sbjct: 58  WGADPHILAKERESAL 73

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  113 bits (285), Expect = 2e-30
 Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
             L  +A   + + V+ L+     +  ++ A++ YG TPL++A  +G  E  ++LL +GA
Sbjct: 16  KKLLEAARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + A    G TPLHL+ +      +    + LL++ AD +A+D  GKT    +S G G+ 
Sbjct: 72  DVNAVDAIGFTPLHLAAFIG--HLE--IAEVLLKHGADVNAQDKFGKTAF-DISIGNGNE 126

Query: 126 KLRELLLWHS 135
            L E+L   +
Sbjct: 127 DLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 94.8 bits (237), Expect = 1e-23
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 8/97 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPL+++  +   EIV+ LL+    +  ++ A +  G TPLH+AA  G  E A++LL HG
Sbjct: 48  LTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 101
           A + A+   G T   +S+     +ED    + L + N
Sbjct: 104 ADVNAQDKFGKTAFDISIGNG--NED--LAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 89.4 bits (223), Expect = 1e-21
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 34  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 93
                      L  AA+ G ++  ++L+A+GA + AK   G+TPL+L+  +     +   
Sbjct: 7   HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG--HLE--I 62

Query: 94  VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           V+ LL+  AD +A D  G TPL HL+   G  ++ E+LL H
Sbjct: 63  VEVLLKNGADVNAVDAIGFTPL-HLAAFIGHLEIAEVLLKH 102

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.9 bits (118), Expect = 2e-07
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 55  EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP 114
             +     HG+       +    L  +       +D   V+ L+   AD +AKD  G TP
Sbjct: 2   RGSHHHHHHGS-------DLGKKLLEAARAG--QDD--EVRILMANGADVNAKDEYGLTP 50

Query: 115 LDHLSNGPGSAKLRELLLWH 134
           L +L+   G  ++ E+LL +
Sbjct: 51  L-YLATAHGHLEIVEVLLKN 69

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  113 bits (286), Expect = 4e-30
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 9/131 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH++A     EIV+ LL+  G D     A +  G TPL +AA  G  E  ++LL +G
Sbjct: 48  WTPLHLAAFNGHLEIVEVLLK-NGADV---NAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + A    G TPLHL+  +     +   V+ LL+  AD +A+D  GKT    +S   G+
Sbjct: 104 ADVNANDMEGHTPLHLAAMFG--HLE--IVEVLLKNGADVNAQDKFGKTAF-DISIDNGN 158

Query: 125 AKLRELLLWHS 135
             L E+L   +
Sbjct: 159 EDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (279), Expect = 4e-29
 Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              L  +A   + + V+ L+     +  ++ A++  G TPLH+AA NG  E  ++LL +G
Sbjct: 15  GKKLLEAARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + A  + GMTPL L+  +     +   V+ LL+  AD +A D EG TPL HL+   G 
Sbjct: 71  ADVNAVDHAGMTPLRLAALFG--HLE--IVEVLLKNGADVNANDMEGHTPL-HLAAMFGH 125

Query: 125 AKLRELLLWH 134
            ++ E+LL +
Sbjct: 126 LEIVEVLLKN 135

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.0 bits (222), Expect = 4e-21
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 34  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 93
                      L  AA+ G ++  ++L+A+GA + A+  +G TPLHL+ +      +   
Sbjct: 7   HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG--HLE--I 62

Query: 94  VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           V+ LL+  AD +A D+ G TPL  L+   G  ++ E+LL +
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPL-RLAALFGHLEIVEVLLKN 102

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  112 bits (282), Expect = 4e-30
 Identities = 59/130 (45%), Positives = 76/130 (58%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH++A     E+VK LLE  G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 3   RTPLHLAARNGHLEVVKLLLE-AGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + AK  NG TPLHL+        +   VK LLE  AD +AKD  G+TPL HL+   G 
Sbjct: 59  ADVNAKDKNGRTPLHLAARNG--HLE--VVKLLLEAGADVNAKDKNGRTPL-HLAARNGH 113

Query: 125 AKLRELLLWH 134
            ++ +LLL  
Sbjct: 114 LEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 93.6 bits (234), Expect = 3e-23
 Identities = 45/98 (45%), Positives = 56/98 (57%), Gaps = 8/98 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH++A     E+VK LLE  G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 36  RTPLHLAARNGHLEVVKLLLEA-GADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
           A + AK  NG TPLHL+        +   VK LLE  A
Sbjct: 92  ADVNAKDKNGRTPLHLAARNG--HLE--VVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 89.3 bits (223), Expect = 9e-22
 Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
           G TPLH+AA+NG  E  KLLL  GA + AK  NG TPLHL+        +   VK LLE 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLE--VVKLLLEA 57

Query: 101 NADCSAKDNEGKTPL 115
            AD +AKD  G+TPL
Sbjct: 58  GADVNAKDKNGRTPL 72

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 69.7 bits (172), Expect = 8e-15
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH++A     E+VK LLE  G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 69  RTPLHLAARNGHLEVVKLLLE-AGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

Query: 65  AF 66
           A+
Sbjct: 125 AY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 73  NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           NG TPLHL+        +   VK LLE  AD +AKD  G+TPL
Sbjct: 1   NGRTPLHLAARNG--HLE--VVKLLLEAGADVNAKDKNGRTPL 39

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  115 bits (290), Expect = 6e-30
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 9/134 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH++        V  L+        EL+  N   +TPLH+A         +LL+  G
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS----AKDNEGKTPLDHLSN 120
           A   A   +G T  HL+  +  RS     ++ LL+  A  +    A++ +G T L H++ 
Sbjct: 70  ASPMALDRHGQTAAHLACEH--RSPT--CLRALLDSAAPGTLDLEARNYDGLTAL-HVAV 124

Query: 121 GPGSAKLRELLLWH 134
                +  +LLL  
Sbjct: 125 NTECQETVQLLLER 138

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (289), Expect = 8e-30
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           QT  H++  +     +++LL+      ++LEA+N  G T LH+A    C E  +LLL  G
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139

Query: 65  AFIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           A I+A    +G +PL  +V  +  S     V+ LL++ A+ +A+   G + L H ++G G
Sbjct: 140 ADIDAVDIKSGRSPLIHAVENN--SLS--MVQLLLQHGANVNAQMYSGSSAL-HSASGRG 194

Query: 124 SAKLRELLLWH 134
              L   L+  
Sbjct: 195 LLPLVRTLVRS 205

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  109 bits (275), Expect = 9e-28
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAH 63
            T LHV+      E V+ LLE       +++A ++  G +PL  A +N      +LLL H
Sbjct: 117 LTALHVAVNTECQETVQLLLER----GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           GA + A+  +G + LH +            V+TL+   AD S K+    TPL  ++    
Sbjct: 173 GANVNAQMYSGSSALHSASGRG--LLP--LVRTLVRSGADSSLKNCHNDTPL-MVARSRR 227

Query: 124 SAKLRELLLWH 134
              +       
Sbjct: 228 VIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 90.2 bits (225), Expect = 7e-21
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 36  AQNMYGETPLHMAAKNGCNEAAKLLL----AHGAFIEAKANNGMTPLHLSVWYSIRSEDY 91
             +  G+TPLH+A   G   A   L+      G  ++   N   TPLHL+V         
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT--TLPS- 60

Query: 92  ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
             V+ L+   A   A D  G+T   HL+    S      LL  
Sbjct: 61  -VVRLLVTAGASPMALDRHGQTAA-HLACEHRSPTCLRALLDS 101

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 89.4 bits (223), Expect = 1e-20
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           ++PL  +   N   +V+ LL+        + AQ   G + LH A+  G     + L+  G
Sbjct: 151 RSPLIHAVENNSLSMVQLLLQ----HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
           A    K  +  TPL ++     R  D   ++      A
Sbjct: 207 ADSSLKNCHNDTPLMVARSR--RVID--ILRGKATRPA 240

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  115 bits (290), Expect = 9e-30
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 8/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH +   +   + + L+    N   +L+A+   G TPL +AA+       + L+   
Sbjct: 91  RTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 147

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + A  + G + LH +   +  + D      LL+  A+   ++N  +TPL  L+   GS
Sbjct: 148 ADVNAVDDLGKSALHWAAAVN--NVD--AAVVLLKNGANKDMQNNREETPL-FLAAREGS 202

Query: 125 AKLRELLLWH 134
            +  ++LL H
Sbjct: 203 YETAKVLLDH 212

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  113 bits (285), Expect = 4e-29
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPL ++A      +++ L+    N   ++ A +  G++ LH AA     +AA +LL +G
Sbjct: 125 TTPLILAARLAVEGMLEDLI----NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG 180

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A  + + N   TPL L+         Y T K LL++ A+    D+  + P   ++     
Sbjct: 181 ANKDMQNNREETPLFLAAREG----SYETAKVLLDHFANRDITDHMDRLPR-DIAQERMH 235

Query: 125 AKLRELLLWH 134
             +  LL   
Sbjct: 236 HDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 98.7 bits (247), Expect = 9e-24
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGN-DKVEL---------EAQNMYGETPLHMAAKNGCN 54
            TPL +++         +  E       +              +  GET LH+AA+   +
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70

Query: 55  EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKT 113
           +AAK LL   A    + N G TPLH +V            + L+   A D  A+ ++G T
Sbjct: 71  DAAKRLLEASADANIQDNMGRTPLHAAVSAD----AQGVFQILIRNRATDLDARMHDGTT 126

Query: 114 PLDHLSNGPGSAKLRELLLWH 134
           PL  L+       + E L+  
Sbjct: 127 PL-ILAARLAVEGMLEDLINS 146

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 95.6 bits (239), Expect = 9e-23
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           ++ LH +A  N  +    LL+    +    + QN   ETPL +AA+ G  E AK+LL H 
Sbjct: 158 KSALHWAAAVNNVDAAVVLLK----NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 213

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103
           A  +   +    P  ++        D   V+ L   +  
Sbjct: 214 ANRDITDHMDRLPRDIAQER--MHHD--IVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 81.4 bits (202), Expect = 9e-18
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 19/117 (16%)

Query: 32  VELEAQNMYGETPLHMAAKNG-------------CNEAAKLLLAHGAFIE-AKANNGMTP 77
           +++  +   G TPL +A+ +G                     +  GA +       G T 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 78  LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           LHL+  YS RS+     K LLE +AD + +DN G+TPL H +    +  + ++L+ +
Sbjct: 61  LHLAARYS-RSD---AAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIRN 112

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPL ++A     E  K LL+         +  +     P  +A +   ++  +LL    
Sbjct: 191 ETPLFLAAREGSYETAKVLLD----HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

Query: 65  AFI 67
              
Sbjct: 247 HHH 249

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  113 bits (285), Expect = 1e-29
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T L  +   N+  I + LL   G++      ++  G+TPL  +   G +E +  LL HG
Sbjct: 69  STALIWAVKNNRLGIAEKLLS-KGSNV---NTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A +  +   G TPL ++  Y     +   VK LLE  AD SA+D  G T     +   G 
Sbjct: 125 ANVNDRNLEGETPLIVASKYG--RSE--IVKKLLELGADISARDLTGLTAE-ASARIFGR 179

Query: 125 AKLRELLLWH 134
            ++ ++    
Sbjct: 180 QEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  104 bits (262), Expect = 2e-26
 Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 15/130 (11%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +    +    +  + +  L             ++ Y  TPL +A   G   A   L+ + 
Sbjct: 9   EIVEKIKDEKSINQNLDFLRN----------YRDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
             +E K   G T L  +V  +         + LL   ++ + KD  GKTPL   S   G 
Sbjct: 59  DKLEDKDIEGSTALIWAVKNN--RLG--IAEKLLSKGSNVNTKDFSGKTPL-MWSIIFGY 113

Query: 125 AKLRELLLWH 134
           +++   LL H
Sbjct: 114 SEMSYFLLEH 123

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 93.6 bits (234), Expect = 1e-22
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPL  S  +  +E+   LLE  G +      +N+ GETPL +A+K G +E  K LL  G
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLE-HGANV---NDRNLEGETPLIVASKYGRSEIVKKLLELG 157

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
           A I A+   G+T    +  +    ++   +K   E   
Sbjct: 158 ADISARDLTGLTAEASARIFG--RQE--VIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 71.3 bits (176), Expect = 1e-14
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 37  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
            +  GE    +  +   N+    L         + +   TPL ++       E+   +  
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLG--MEN--AIDK 53

Query: 97  LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           L+E       KD EG T L   +       + E LL  
Sbjct: 54  LVENFDKLEDKDIEGSTAL-IWAVKNNRLGIAEKLLSK 90

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  114 bits (287), Expect = 1e-29
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T L+ +      +IV+ L   P    +EL  QN  G+T LH AA  G  +  +LLLA G
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPN---IELNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           A  + +         ++   +  S     +K     +A  +  + E        S+   
Sbjct: 164 ARTDLRNIEKKLAFDMATNAACAS----LLKKKQGTDAVRTLSNAEDYLDD-EDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 95.4 bits (238), Expect = 7e-23
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 15/131 (11%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T         +  ++ S              Q    + PLH AAK G     +  L + 
Sbjct: 46  DTNWWKGTSKGRTGLIPSNYVA---------EQAESIDNPLHEAAKRGNLSWLRECLDNR 96

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHLSNGPG 123
             +      G T L+ +       +D   V+ L  + N + + ++  G T L H +   G
Sbjct: 97  VGVNGLDKAGSTALYWACHGG--HKD--IVEMLFTQPNIELNQQNKLGDTAL-HAAAWKG 151

Query: 124 SAKLRELLLWH 134
            A + +LLL  
Sbjct: 152 YADIVQLLLAK 162

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 86.1 bits (214), Expect = 1e-19
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 14/130 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           Q  +  +    +      L    G+    +       +T        G        L   
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGD----IIYITDMSDTNWWKGTSKGR-----TGLIPS 63

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
            ++  +A +   PLH +      +     ++  L+     +  D  G T L + +   G 
Sbjct: 64  NYVAEQAESIDNPLHEAAKR--GNLS--WLRECLDNRVGVNGLDKAGSTAL-YWACHGGH 118

Query: 125 AKLRELLLWH 134
             + E+L   
Sbjct: 119 KDIVEMLFTQ 128

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 10/101 (9%)

Query: 34  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 93
                  G+  +  A           L      I    +   T               + 
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGT---------SK 55

Query: 94  VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            +T L  +   + +      PL H +   G+       L +
Sbjct: 56  GRTGLIPSNYVAEQAESIDNPL-HEAAKRGNLSWLRECLDN 95

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  115 bits (291), Expect = 1e-29
 Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 5   QTPLHVSAGYNKAEIVKSLLE------WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 58
            T    +A Y K + +K L +           K + E     G T L  AA+ G  E  K
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 59  LLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
           +LL   GA + A  N G   L  ++  S  S+  A    LL++ AD + +   GKTPL  
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL-I 224

Query: 118 LSNGPGSAKLRELLLWH 134
           L+       L + LL  
Sbjct: 225 LAVEKKHLGLVQRLLEQ 241

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (268), Expect = 2e-26
 Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAH 63
              L  +      ++V+ LLE        +  Q    G TPLH A +    +  +LLL H
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           GA    +  NG TP  L+            +K  L   AD +  D  G T  
Sbjct: 62  GADPVLRKKNGATPFLLAAIAG----SVKLLKLFLSKGADVNECDFYGFTAF 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  106 bits (266), Expect = 4e-26
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 13/135 (9%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG----CNEAAKLL 60
            T L  +A     E++K LL+  G D     A +  G   L  A  +           LL
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADV---NACDNMGRNALIHALLSSDDSDVEAITHLL 205

Query: 61  LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLS 119
           L HGA +  +   G TPL L+V           V+ LLE  + + +  D++GKT L  L+
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKK----HLGLVQRLLEQEHIEINDTDSDGKTAL-LLA 260

Query: 120 NGPGSAKLRELLLWH 134
                 K+ ELL   
Sbjct: 261 VELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  102 bits (256), Expect = 8e-25
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH +   ++ +IV+ LL   G D      +   G TP  +AA  G  +  KL L+ G
Sbjct: 40  WTPLHNAVQMSREDIVELLLR-HGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
           A +      G T    +  Y         +K L +  A+ + +    +        G
Sbjct: 96  ADVNECDFYGFTAFMEAAVYG----KVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 89.1 bits (222), Expect = 3e-20
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 13/110 (11%)

Query: 5   QTPLHVSAGYN----KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
           +  L  +   +       I   LL+       ++  +   G+TPL +A +       + L
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 61  LAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 109
           L      I    ++G T L L+V    + +     + L +  A     D 
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVEL--KLKK--IAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.0 bits (214), Expect = 4e-19
 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 38  NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-GMTPLHLSVWYSIRSEDYATVKT 96
            +     L  A +N   +  + LL  GA +  +    G TPLH +V  S   ED   V+ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS--RED--IVEL 57

Query: 97  LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           LL + AD   +   G TP   L+   GS KL +L L  
Sbjct: 58  LLRHGADPVLRKKNGATPF-LLAAIAGSVKLLKLFLSK 94

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  114 bits (287), Expect = 1e-29
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T LH++A     E+V+ LL    N ++++  Q+  G TP+  A +    +  KLLL+ G
Sbjct: 78  STCLHLAAKKGHYEVVQYLLS---NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           + I  + N     LH + +      D    + LL    D  A +  G +PL H++     
Sbjct: 135 SDINIRDNEENICLHWAAFSG--CVD--IAEILLAAKCDLHAVNIHGDSPL-HIAARENR 189

Query: 125 AKLRELLLWH 134
                L L  
Sbjct: 190 YDCVVLFLSR 199

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  112 bits (282), Expect = 1e-28
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TP+  +  Y   ++VK LL   G+D      ++      LH AA +GC + A++LLA  
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSK-GSDI---NIRDNEENICLHWAAFSGCVDIAEILLAAK 167

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
             + A   +G +PLH++   +    D   V   L  ++D + K+ EG+TPL 
Sbjct: 168 CDLHAVNIHGDSPLHIAAREN--RYD--CVVLFLSRDSDVTLKNKEGETPLQ 215

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  107 bits (271), Expect = 3e-27
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           ++PLH +A     +I   L++        ++  +    TPL  AA+N   EA K L+  G
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQ----AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPLDHLSNGPG 123
           A ++ K   G T LHL+         Y  V+ LL     D + +D+ G TP+   +    
Sbjct: 68  ALVDPKDAEGSTCLHLAAKKG----HYEVVQYLLSNGQMDVNCQDDGGWTPM-IWATEYK 122

Query: 124 SAKLRELLLWH 134
              L +LLL  
Sbjct: 123 HVDLVKLLLSK 133

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 95.2 bits (238), Expect = 9e-23
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              LH +A     +I + LL      K +L A N++G++PLH+AA+    +   L L+  
Sbjct: 145 NICLHWAAFSGCVDIAEILLA----AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103
           + +  K   G TPL  +   S       +   + +   D
Sbjct: 201 SDVTLKNKEGETPLQCASLNS----QVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 92.5 bits (231), Expect = 9e-22
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 32  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 91
           +  + ++    +PLH AA+ G  +   +L+  GA I+  + +  TPL  +        + 
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN--NHLE- 58

Query: 92  ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
             VK L++  A    KD EG T L HL+   G  ++ + LL +
Sbjct: 59  -AVKYLIKAGALVDPKDAEGSTCL-HLAAKKGHYEVVQYLLSN 99

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  114 bits (287), Expect = 1e-29
 Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 11/131 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TP   +A     + +  LLE       +++A +  G T L   A  G ++  +LL   G
Sbjct: 46  ETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG 100

Query: 65  AFIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           A ++ +    G+T LH++  Y     +   V+ L+E  AD   +D  G T L  L+    
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYV--RPE--VVEALVELGADIEVEDERGLTAL-ELAREIL 155

Query: 124 SAKLRELLLWH 134
               +   +  
Sbjct: 156 KTTPKGNPMQF 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 95.7 bits (239), Expect = 9e-23
 Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 32/153 (20%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAH 63
           +T L   AG    + V+ L E       +L+ ++M  G T LHMAA     E  + L+  
Sbjct: 78  RTALLFVAGLGSDKCVRLLAEA----GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD-------------------- 103
           GA IE +   G+T L L+                +++                       
Sbjct: 134 GADIEVEDERGLTALELAREIL----KTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEV 189

Query: 104 --CSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
                K  +GK    +L           +   H
Sbjct: 190 DEIVEKRGKGKDVE-YLVRWKDGGDCEWVKGVH 221

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 90.7 bits (226), Expect = 5e-21
 Identities = 27/131 (20%), Positives = 40/131 (30%), Gaps = 14/131 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
                +      +            D           ETP   AA+    +A   LL   
Sbjct: 16  AMEYLIEWKDGHSPSWVPSSYI-AADV------VSEYETPWWTAARKADEQALSQLL-ED 67

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE-GKTPLDHLSNGPG 123
             ++A   NG T L               V+ L E  AD   +D   G T L H++ G  
Sbjct: 68  RDVDAVDENGRTALLFVAGLG----SDKCVRLLAEAGADLDHRDMRGGLTAL-HMAAGYV 122

Query: 124 SAKLRELLLWH 134
             ++ E L+  
Sbjct: 123 RPEVVEALVEL 133

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
           G     +  K+G + +        A + ++     TP   +   +    D   +  LLE 
Sbjct: 15  GAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKA----DEQALSQLLE- 66

Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           + D  A D  G+T L     G GS K   LL   
Sbjct: 67  DRDVDAVDENGRTAL-LFVAGLGSDKCVRLLAEA 99

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 20/96 (20%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEW------------------PGNDKVELEAQNMYGETPLH 46
            T L ++    K     + +++                     +  E+  +   G+   +
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEY 204

Query: 47  MAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82
           +       +   +   H A   AK       L  +V
Sbjct: 205 LVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAV 238

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  110 bits (279), Expect = 3e-29
 Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 10/130 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              L  +A     E + SLL+    +     AQN +G T L +    G  E A+ LL  G
Sbjct: 6   GNELASAAARGDLEQLTSLLQN-NVNV---NAQNGFGRTALQVMK-LGNPEIARRLLLRG 60

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A  + K   G   +H +        D  T++TLLE+ AD + +DNEG  PL HL+   G 
Sbjct: 61  ANPDLKDRTGFAVIHDAARA--GFLD--TLQTLLEFQADVNIEDNEGNLPL-HLAAKEGH 115

Query: 125 AKLRELLLWH 134
            ++ E L+ H
Sbjct: 116 LRVVEFLVKH 125

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  102 bits (258), Expect = 3e-26
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 11/131 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T L V       EI + LL   G +    + ++  G   +H AA+ G  +  + LL   
Sbjct: 39  RTALQV-MKLGNPEIARRLLL-RGANP---DLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPLDHLSNGPG 123
           A +  + N G  PLHL+            V+ L+++ A +   ++++G T    L+   G
Sbjct: 94  ADVNIEDNEGNLPLHLAAKEG--HLR--VVEFLVKHTASNVGHRNHKGDTAC-DLARLYG 148

Query: 124 SAKLRELLLWH 134
             ++  L+  +
Sbjct: 149 RNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 88.2 bits (220), Expect = 5e-21
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
               L  AA  G  E    LL +   + A+   G T L +    +         + LL  
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-----EIARRLLLR 59

Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            A+   KD  G   + H +   G     + LL  
Sbjct: 60  GANPDLKDRTGFAVI-HDAARAGFLDTLQTLLEF 92

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 70.1 bits (173), Expect = 1e-14
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
             PLH++A      +V+ L++   +    +  +N  G+T   +A   G NE   L+ A+G
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVK---HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

Query: 65  A 65
           A
Sbjct: 161 A 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 71  ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A      L  +        D   + +LL+ N + +A++  G+T L
Sbjct: 2   AEPWGNELASAAARG----DLEQLTSLLQNNVNVNAQNGFGRTAL 42

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (275), Expect = 4e-29
 Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
                +      + VK  +   G D          G  PLH AA  G  E  + LL  GA
Sbjct: 9   KEFMWALKNGDLDEVKDYVA-KGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
            I A   + +TPL  +V+        + VK LL   AD + K  +G T  +
Sbjct: 65  DINAPDKHHITPLLSAVYEG----HVSCVKLLLSKGADKTVKGPDGLTAFE 111

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 89.4 bits (223), Expect = 7e-22
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           + PLH +A   + EI++ LL   G D     A + +  TPL  A   G     KLLL+ G
Sbjct: 41  RKPLHYAADCGQLEILEFLLL-KGADI---NAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96

Query: 65  AFIEAKANNGMTPLHL 80
           A    K  +G+T    
Sbjct: 97  ADKTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 87.1 bits (217), Expect = 5e-21
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 36  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 95
                 +     A KNG  +  K  +A G  +      G  PLH +     + E    ++
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG-QLE---ILE 57

Query: 96  TLLEYNADCSAKDNEGKTPL 115
            LL   AD +A D    TPL
Sbjct: 58  FLLLKGADINAPDKHHITPL 77

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.8 bits (115), Expect = 3e-07
 Identities = 12/51 (23%), Positives = 14/51 (27%), Gaps = 4/51 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNE 55
            TPL  +        VK LL   G DK     +   G T            
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLS-KGADK---TVKGPDGLTAFEATDNQAIKA 120

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  116 bits (294), Expect = 5e-29
 Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH++A  N+ E+ +SLL++         A+++ G TPLH+AA+ G  E   LLL+  
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQY----GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A       +G+TPLHL                L+++     A    G TPL H+++  G+
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEG----HVPVADVLIKHGVMVDATTRMGYTPL-HVASHYGN 323

Query: 125 AKLRELLLWH 134
            KL + LL H
Sbjct: 324 IKLVKFLLQH 333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  116 bits (292), Expect = 1e-28
 Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH++A    AE+V  LL      +      N  G TPLH+ A+ G    A +L+ HG
Sbjct: 246 VTPLHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
             ++A    G TPLH++  Y   +     VK LL++ AD +AK   G +PL H +   G 
Sbjct: 302 VMVDATTRMGYTPLHVASHY--GNIK--LVKFLLQHQADVNAKTKLGYSPL-HQAAQQGH 356

Query: 125 AKLRELLLWH 134
             +  LLL +
Sbjct: 357 TDIVTLLLKN 366

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  113 bits (285), Expect = 9e-28
 Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLHV+  +N  +IVK LL           +    G TPLH+AAK    E A+ LL +G
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPR----GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
               A++  G+TPLHL+            V  LL   A+ +  +  G TPL HL    G 
Sbjct: 236 GSANAESVQGVTPLHLAAQEG----HAEMVALLLSKQANGNLGNKSGLTPL-HLVAQEGH 290

Query: 125 AKLRELLLWH 134
             + ++L+ H
Sbjct: 291 VPVADVLIKH 300

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  113 bits (285), Expect = 1e-27
 Identities = 49/128 (38%), Positives = 64/128 (50%), Gaps = 9/128 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLHV++      IVK+LL+            N+  ETPLHMAA+ G  E AK LL + 
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + AKA +  TPLH     + R      VK LLE NA+ +     G TPL H++   G 
Sbjct: 71  AKVNAKAKDDQTPLH----CAARIGHTNMVKLLLENNANPNLATTAGHTPL-HIAAREGH 125

Query: 125 AKLRELLL 132
            +    LL
Sbjct: 126 VETVLALL 133

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  111 bits (280), Expect = 4e-27
 Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH++A     E V +LLE     +         G TPLH+AAK G    A+LLL   
Sbjct: 114 HTPLHIAAREGHVETVLALLEK----EASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A   A   NG+TPLH++V ++    +   VK LL       +    G TPL H++     
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHN----NLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQ 224

Query: 125 AKLRELLLWH 134
            ++   LL +
Sbjct: 225 VEVARSLLQY 234

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  107 bits (271), Expect = 6e-26
 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           QTPLH +A      +VK LLE    +          G TPLH+AA+ G  E    LL   
Sbjct: 81  QTPLHCAARIGHTNMVKLLLE----NNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A        G TPLH++  Y          + LLE +A  +A    G TPL H++    +
Sbjct: 137 ASQACMTKKGFTPLHVAAKYG----KVRVAELLLERDAHPNAAGKNGLTPL-HVAVHHNN 191

Query: 125 AKLRELLL 132
             + +LLL
Sbjct: 192 LDIVKLLL 199

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  102 bits (257), Expect = 5e-24
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLHV++ Y   ++VK LL+     + ++ A+   G +PLH AA+ G  +   LLL +G
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQ----HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL---LEYNADCSAKDNEGKTPLD----H 117
           A     +++G TPL ++          +    L    +  +     D    +  +     
Sbjct: 368 ASPNEVSSDGTTPLAIAKRLG----YISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEI 423

Query: 118 LSNG 121
           L   
Sbjct: 424 LDVS 427

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.2 bits (230), Expect = 2e-20
 Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 32  VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 91
           +        G TPLH+A+  G     K LL  GA          TPLH++        + 
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA--GHTE- 61

Query: 92  ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
              K LL+  A  +AK  + +TPL H +   G   + +LLL +
Sbjct: 62  -VAKYLLQNKAKVNAKAKDDQTPL-HCAARIGHTNMVKLLLEN 102

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.3 bits (137), Expect = 8e-09
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
            G        +G+TPLH++ +          VK LL+  A  +  + + +TPL H++   
Sbjct: 3   PGISGGGGGESGLTPLHVASFMG----HLPIVKNLLQRGASPNVSNVKVETPL-HMAARA 57

Query: 123 GSAKLRELLLWH 134
           G  ++ + LL +
Sbjct: 58  GHTEVAKYLLQN 69

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  113 bits (285), Expect = 7e-29
 Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAH 63
            TPLHV+  +  AE+V+ L +       +L       G TPLH+A +       +LLL  
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDA----GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           GA   A+   G TPL  ++       +    + L  + A       +  +P    S    
Sbjct: 215 GADPTARMYGGRTPLGSALLRP----NPILARLLRAHGAPEPEDGGDKLSPC-SSSGSDS 269

Query: 124 SAKLRELLLWHSE 136
            +  R+    + +
Sbjct: 270 DSDNRDEGDEYDD 282

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  108 bits (271), Expect = 6e-27
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T LH++  +     +  LL         L+ QN  G+T LH+AA  G     + L A G
Sbjct: 10  DTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
           A +      G T LHL+     R+        LL+         ++           
Sbjct: 69  AGVLVAERGGHTALHLACRV--RAHT--CACVLLQPRPSHPRDASDTYLTQSQDCTP 121

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  103 bits (260), Expect = 2e-25
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 9/132 (6%)

Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
           +  P  V +  N     +   E      ++LEA+N  G TPLH+A  +   E  +LL   
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWR---LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 64  GAFIEAKANN-GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
           GA +       G TPLHL+V     +     ++ LL+  AD +A+   G+TPL   +   
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQ--AAS--VLELLLKAGADPTARMYGGRTPL-GSALLR 235

Query: 123 GSAKLRELLLWH 134
            +  L  LL  H
Sbjct: 236 PNPILARLLRAH 247

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.8 bits (234), Expect = 8e-22
 Identities = 28/141 (19%), Positives = 50/141 (35%), Gaps = 21/141 (14%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           QT LH++A   +A  V+ L          +      G T LH+A +   +  A +LL   
Sbjct: 46  QTALHLAAILGEASTVEKLYA----AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101

Query: 65  AFIEAKAN-------------NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 111
                 A+                 P  +    +  +E         ++     A++ +G
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE---EEPRDEDWRLQLEAENYDG 158

Query: 112 KTPLDHLSNGPGSAKLRELLL 132
            TPL H++     A++  LL 
Sbjct: 159 HTPL-HVAVIHKDAEMVRLLR 178

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.0 bits (232), Expect = 1e-21
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 34  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA---FIEAKANNGMTPLHLSVWYSIRSED 90
                  G+T LH+A  +        LL   A   +++ + + G T LHL+         
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL--GEAS 59

Query: 91  YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
             TV+ L    A     +  G T L HL+    +     +LL  
Sbjct: 60  --TVEKLYAAGAGVLVAERGGHTAL-HLACRVRAHTCACVLLQP 100

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  109 bits (275), Expect = 1e-28
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
             L  +A     + V+ LL       V  +A N +G+T L +    G    A  LL  GA
Sbjct: 4   DRLSGAAARGDVQEVRRLLHREL---VHPDALNRFGKTALQVMM-FGSTAIALELLKQGA 59

Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
               +  +G +P+H +        D  T+K L+E+ AD +  D  G  P+ HL+   G  
Sbjct: 60  SPNVQDTSGTSPVHDAARTG--FLD--TLKVLVEHGADVNVPDGTGALPI-HLAVQEGHT 114

Query: 126 KLRELLLWH 134
            +   L   
Sbjct: 115 AVVSFLAAE 123

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (265), Expect = 2e-27
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T L V   +    I   LL+  G        Q+  G +P+H AA+ G  +  K+L+ HG
Sbjct: 37  KTALQVMM-FGSTAIALELLK-QGASP---NVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A +      G  P+HL+V           V  L    +D   +D  G TPL  L+   G+
Sbjct: 92  ADVNVPDGTGALPIHLAVQEG--HTA--VVSFLAA-ESDLHRRDARGLTPL-ELALQRGA 145

Query: 125 AKLRELLLWH 134
             L ++L  H
Sbjct: 146 QDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 77.8 bits (193), Expect = 2e-17
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 41  GETPLHMAAKNG-CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
               L  AA  G   E  +LL       +A    G T L + ++ S      A    LL+
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-----AIALELLK 56

Query: 100 YNADCSAKDNEGKTPL 115
             A  + +D  G +P+
Sbjct: 57  QGASPNVQDTSGTSPV 72

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (288), Expect = 1e-28
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 9/128 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH++AGYN+  IV+ LL+       ++ A++  G  PLH A   G  E  +LLL HG
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQH----GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + A      TPLH +   +    +      LL + AD +  +  GK+ +  ++  P  
Sbjct: 115 ACVNAMDLWQFTPLHEAASKN--RVE--VCSLLLSHGADPTLVNCHGKSAV-DMAPTPEL 169

Query: 125 AKLRELLL 132
            +      
Sbjct: 170 RERLTYEF 177

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  111 bits (280), Expect = 1e-27
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 5   QTPLHVSAG---YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
           +T LH +       + ++ + LL         +  +N    TPLH+AA+   N+  ++L 
Sbjct: 212 ETALHCAVASLHPKRKQVAELLL----RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 62  AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
            HGA + A  + G T LH +           T + LL Y +D S    +G T   
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAG----HLQTCRLLLSYGSDPSIISLQGFTAAQ 318

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  105 bits (265), Expect = 2e-25
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
             L  +   N+ +++  L        V   A +    TPLH+AA        +LLL HGA
Sbjct: 27  ELLEAARSGNEEKLMALLTP----LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82

Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            + AK   G+ PLH +  Y      Y   + LL++ A  +A D    TPL H +      
Sbjct: 83  DVHAKDKGGLVPLHNACSYG----HYEVTELLLKHGACVNAMDLWQFTPL-HEAASKNRV 137

Query: 126 KLRELLLWH 134
           ++  LLL H
Sbjct: 138 EVCSLLLSH 146

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  104 bits (261), Expect = 6e-25
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 13/109 (11%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLHV+A     ++++ L +       ++ A +  G+T LH AA  G  +  +LLL++G
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKH----GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 113
           +     +  G T   +             V+ +L  +      D + + 
Sbjct: 304 SDPSIISLQGFTAAQMGN---------EAVQQILSESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  102 bits (258), Expect = 2e-24
 Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 25/150 (16%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
             PLH +  Y   E+ + LL+        + A +++  TPLH AA     E   LLL+HG
Sbjct: 92  LVPLHNACSYGHYEVTELLLKH----GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147

Query: 65  AFIEAKANNGMTPLHLSVWY-----------------SIRSEDYATVKTLLEYNADCSAK 107
           A       +G + + ++                    + R  D A VK  L        +
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ 207

Query: 108 DNEGKTPLDHL---SNGPGSAKLRELLLWH 134
               +T L H    S  P   ++ ELLL  
Sbjct: 208 PQSHETAL-HCAVASLHPKRKQVAELLLRK 236

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 81.0 bits (201), Expect = 5e-17
 Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 35  EAQNMYGETPLHMAA-KNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 93
                Y +  L  AA      +   LL        A      TPLHL+  Y         
Sbjct: 18  VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY--NRVR--I 73

Query: 94  VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           V+ LL++ AD  AKD  G  PL H +   G  ++ ELLL H
Sbjct: 74  VQLLLQHGADVHAKDKGGLVPL-HNACSYGHYEVTELLLKH 113

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 17/95 (17%)

Query: 40  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
           +G++ L              L    A            L      +    +   +  L  
Sbjct: 3   FGKSALD-------------LADPSAKAVLTGEYKKDELL---EAARSGNEEKLMALLTP 46

Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            N +C A D    TPL HL+ G    ++ +LLL H
Sbjct: 47  LNVNCHASDGRKSTPL-HLAAGYNRVRIVQLLLQH 80

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  110 bits (278), Expect = 2e-28
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TP H++      E+VKSL +     K +L      G T LH+A      E ++ L+ +G
Sbjct: 73  WTPFHIACSVGNLEVVKSLYD--RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG 130

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDHLSNGPG 123
           A +  K      PLH +      S     ++ L     +  + +D +G TPL   +   G
Sbjct: 131 ASVRIKDKFNQIPLHRAASVG--SLK--LIELLCGLGKSAVNWQDKQGWTPL-FHALAEG 185

Query: 124 SAKLRELLL 132
                 LL+
Sbjct: 186 HGDAAVLLV 194

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  103 bits (260), Expect = 9e-26
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 14/132 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T LH++ G    E+ + L+E    +   +  ++ + + PLH AA  G  +  +LL   G
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIE----NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

Query: 65  -AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGP 122
            + +  +   G TPL  ++       D      L+E Y A+    DN+G    D   N  
Sbjct: 164 KSAVNWQDKQGWTPLFHALAEG--HGD--AAVLLVEKYGAEYDLVDNKGAKAEDVALNE- 218

Query: 123 GSAKLRELLLWH 134
              ++++  L +
Sbjct: 219 ---QVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  102 bits (258), Expect = 2e-25
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 13/137 (9%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           M+  PLH +   N+   V+ LL    +       ++  G  PLH +     +E    LL+
Sbjct: 1   MSNYPLHQACMENEFFKVQELLHSKPSLL---LQKDQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 63  HGAFI---EAKANNGMTPLHLSVWYSIRSEDYATVKTLLE--YNADCSAKDNEGKTPLDH 117
               +   +   ++G TP H++        +   VK+L +     D +   N+G T L H
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVG----NLEVVKSLYDRPLKPDLNKITNQGVTCL-H 112

Query: 118 LSNGPGSAKLRELLLWH 134
           L+ G    ++ + L+ +
Sbjct: 113 LAVGKKWFEVSQFLIEN 129

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  110 bits (278), Expect = 3e-28
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH +       +V  L+++      +    +  G + +H+AA+ G       L+A G
Sbjct: 77  STPLHWATRQGHLSMVVQLMKY----GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPL 115
             ++    NGMTPL  + + +   +     + LL +N   +  D     T L
Sbjct: 133 QDVDMMDQNGMTPLMWAAYRTHSVD---PTRLLLTFNVSVNLGDKYHKNTAL 181

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  109 bits (275), Expect = 8e-28
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 9/112 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              +  +  Y   E  + L+E  G D       +    T LH AA N   +  K  ++ G
Sbjct: 10  TWDIVKATQYGIYERCRELVEA-GYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKG 65

Query: 65  AFIEAKANN-GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A ++    +   TPLH +            V  L++Y AD S  D EG + +
Sbjct: 66  AIVDQLGGDLNSTPLHWATRQG--HLS--MVVQLMKYGADPSLIDGEGCSCI 113

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  104 bits (263), Expect = 4e-26
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T LH +A  N+ ++VK  +   G   V+ +       TPLH A + G       L+ +G
Sbjct: 43  VTLLHWAAINNRIDLVKYYISK-GAI-VD-QLGGDLNSTPLHWATRQGHLSMVVQLMKYG 99

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A        G + +HL+  +       + V  L+    D    D  G TPL
Sbjct: 100 ADPSLIDGEGCSCIHLAAQFG----HTSIVAYLIAKGQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  102 bits (258), Expect = 2e-25
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 11/132 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG-CNEAAKLLLAH 63
            + +H++A +    IV  L+        +++  +  G TPL  AA      +  +LLL  
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAK----GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

Query: 64  GAFIEAKAN-NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
              +      +  T LH +V       +   +  LLE  A+  A++ +G++ L  L+   
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAG----NTTVISLLLEAGANVDAQNIKGESAL-DLAKQR 220

Query: 123 GSAKLRELLLWH 134
            +  +   L   
Sbjct: 221 KNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 92.5 bits (231), Expect = 9e-22
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 10/106 (9%)

Query: 5   QTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLA 62
            TPL  +A   +  +  + LL +     V +      +  T LH A   G      LLL 
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTF----NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 108
            GA ++A+   G + L L+     ++     +  L E        +
Sbjct: 199 AGANVDAQNIKGESALDLAKQR--KNVW--MINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 83.6 bits (208), Expect = 1e-18
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 34  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 93
           +   + Y    +  A + G  E  + L+  G  +       +T LH +   +        
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINN----RIDL 57

Query: 94  VKTLLEYNADCSAKDNE-GKTPL 115
           VK  +   A       +   TPL
Sbjct: 58  VKYYISKGAIVDQLGGDLNSTPL 80

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  111 bits (281), Expect = 3e-28
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            +P+H +A     E V SL+ +       ++ +  +  TPL++A +N      K LL  G
Sbjct: 158 ASPIHEAARRGHVECVNSLIAY----GGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
           A +  +     +PLH  V  +  SE+      L+++ AD  AK+ EGK P++
Sbjct: 214 ADVN-QGKGQDSPLHAVVRTA--SEE--LACLLMDFGADTQAKNAEGKRPVE 260

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (256), Expect = 9e-25
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 10/130 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            +P+H +A +     +++L+         +        +PLH A   G     K+LL HG
Sbjct: 60  WSPMHEAAIHGHQLSLRNLIS----QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A +     +  TPL  +      S D   V  LL++ A    + +   +P+ H +   G 
Sbjct: 116 AQVNGVTADWHTPLFNACVSG--SWD--CVNLLLQHGASVQPESD-LASPI-HEAARRGH 169

Query: 125 AKLRELLLWH 134
            +    L+ +
Sbjct: 170 VECVNSLIAY 179

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  100 bits (251), Expect = 4e-24
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 11/130 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPL  +      + V  LL+        ++ ++    +P+H AA+ G  E    L+A+G
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQH----GASVQPES-DLASPIHEAARRGHVECVNSLIAYG 180

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
             I+ K ++  TPL+L+     +      VK LLE  AD + +     +PL H      S
Sbjct: 181 GNIDHKISHLGTPLYLACEN--QQRA--CVKKLLESGADVN-QGKGQDSPL-HAVVRTAS 234

Query: 125 AKLRELLLWH 134
            +L  LL+  
Sbjct: 235 EELACLLMDF 244

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 95.6 bits (239), Expect = 2e-22
 Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           Q  +  S      +     L              +   +P+H AA +G   + + L++ G
Sbjct: 28  QGGMDGSKPAGPRDFPGIRLLSNPLM-----GDAVSDWSPMHEAAIHGHQLSLRNLISQG 82

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
             +     + ++PLH +          + VK LL++ A  +    +  TPL   +   GS
Sbjct: 83  WAVNIITADHVSPLHEACLGG----HLSCVKILLKHGAQVNGVTADWHTPL-FNACVSGS 137

Query: 125 AKLRELLLWH 134
                LLL H
Sbjct: 138 WDCVNLLLQH 147

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.0 bits (214), Expect = 5e-19
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPL+++    +   VK LLE  G D V    Q    ++PLH   +    E A LL+  G
Sbjct: 191 GTPLYLACENQQRACVKKLLES-GAD-VN---QGKGQDSPLHAVVRTASEELACLLMDFG 245

Query: 65  AFIEAKANNGMTPLHLSVWYS 85
           A  +AK   G  P+ L    S
Sbjct: 246 ADTQAKNAEGKRPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 13/126 (10%)

Query: 10  VSAGYNKAEIVKSLLEWPGN-DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE 68
           + + ++       L+    +   ++ +   M G  P       G       LL++     
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPL--M 53

Query: 69  AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 128
             A +  +P+H +  +    +   +++ L+      +    +  +PL H +   G     
Sbjct: 54  GDAVSDWSPMHEAAIH--GHQL--SLRNLISQGWAVNIITADHVSPL-HEACLGGHLSCV 108

Query: 129 ELLLWH 134
           ++LL H
Sbjct: 109 KILLKH 114

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  107 bits (270), Expect = 3e-27
 Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 23/148 (15%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGN-DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
           +T LH++A Y+  E    L+E         + ++   G+T LH+A  N      + LLA 
Sbjct: 38  ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97

Query: 64  GAFIEAKANN-------------GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE 110
           GA + A+A               G  PL  +      SE+   V+ L+E+ AD  A+D+ 
Sbjct: 98  GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG--SEE--IVRLLIEHGADIRAQDSL 153

Query: 111 GKTPLDHLS----NGPGSAKLRELLLWH 134
           G T L H+     N   + ++  LLL +
Sbjct: 154 GNTVL-HILILQPNKTFACQMYNLLLSY 180

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  105 bits (265), Expect = 2e-26
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 5   QTPLHVSAGYNKAEIVKSLLE---------WPGNDKVELEAQNMYGETPLHMAAKNGCNE 55
           QT LH++       +V++LL                        YGE PL  AA  G  E
Sbjct: 76  QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE 135

Query: 56  AAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK------DN 109
             +LL+ HGA I A+ + G T LH+ +    ++        LL Y+     K      +N
Sbjct: 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN 195

Query: 110 EGKTPLDHLSNGPGSAKLRELLLWH 134
           +G TP   L+   G+  + + L+  
Sbjct: 196 QGLTPF-KLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 98.8 bits (247), Expect = 4e-24
 Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 26/148 (17%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           ++PL ++A  N  + +  LL++ G    E+  +   GET LH+AA     EAA +L+   
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEG---CEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60

Query: 65  AFIE-----AKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN---------- 109
             +      ++   G T LH++V      ++   V+ LL   A  SA+            
Sbjct: 61  PELVFEPMTSELYEGQTALHIAVIN----QNVNLVRALLARGASVSARATGSVFHYRPHN 116

Query: 110 ---EGKTPLDHLSNGPGSAKLRELLLWH 134
               G+ PL   +   GS ++  LL+ H
Sbjct: 117 LIYYGEHPL-SFAACVGSEEIVRLLIEH 143

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 85.3 bits (212), Expect = 3e-19
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 39  MYGETPLHMAAKNGCNEA-AKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 97
           M  E+PL +AAK    +A +KLL   G  +  +   G T LH++  Y   + +      L
Sbjct: 1   MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYD--NLE--AAMVL 56

Query: 98  LEYNAD-----CSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           +E   +      +++  EG+T L H++    +  L   LL  
Sbjct: 57  MEAAPELVFEPMTSELYEGQTAL-HIAVINQNVNLVRALLAR 97

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  107 bits (269), Expect = 4e-27
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
              +++      E+ + +L     DK      +    T LH A   G  E  + LL  G 
Sbjct: 9   MICNLAYSGKLDELKERILA----DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
            +  K + G +PLH++            VK LL   A  +A +  G TPL H +      
Sbjct: 65  PVNDKDDAGWSPLHIAASAGXDE----IVKALLVKGAHVNAVNQNGCTPL-HYAASKNRH 119

Query: 126 KLRELLLWHSEEQRKR 141
           ++  +LL        +
Sbjct: 120 EIAVMLLEGGANPDAK 135

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 97.2 bits (242), Expect = 2e-23
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 9/137 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH +      EIV+ LL+      V +  ++  G +PLH+AA  G +E  K LL  G
Sbjct: 41  RTALHWACSAGHTEIVEFLLQL----GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + A   NG TPLH +   +     +     LLE  A+  AKD+   T + H +   G+
Sbjct: 97  AHVNAVNQNGCTPLHYAASKN----RHEIAVMLLEGGANPDAKDHYDATAM-HRAAAKGN 151

Query: 125 AKLRELLLWHSEEQRKR 141
            K+  +LL++      +
Sbjct: 152 LKMVHILLFYKASTNIQ 168

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 88.0 bits (218), Expect = 3e-20
 Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 9/137 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            +PLH++A     EIVK+LL         + A N  G TPLH AA    +E A +LL  G
Sbjct: 74  WSPLHIAASAGXDEIVKALLV----KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A  +AK +   T +H +        +   V  LL Y A  + +D EG TPL HL+     
Sbjct: 130 ANPDAKDHYDATAMHRAAAKG----NLKMVHILLFYKASTNIQDTEGNTPL-HLACDEER 184

Query: 125 AKLRELLLWHSEEQRKR 141
            +  + L+         
Sbjct: 185 VEEAKFLVTQGASIYIE 201

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.9 bits (210), Expect = 5e-19
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 5/104 (4%)

Query: 38  NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 97
            +      ++A     +E  + +LA  +       +  T LH +            V+ L
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAG----HTEIVEFL 59

Query: 98  LEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141
           L+     + KD+ G +PL H++   G  ++ + LL         
Sbjct: 60  LQLGVPVNDKDDAGWSPL-HIAASAGXDEIVKALLVKGAHVNAV 102

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.9 bits (197), Expect = 3e-17
 Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
             TPLH +A  N+ EI   LLE   N     +A++ Y  T +H AA  G  +   +LL +
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGAN----PDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
            A    +   G TPLHL+             K L+   A    ++ E KTPL     G G
Sbjct: 162 KASTNIQDTEGNTPLHLACDEE----RVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG 217

Query: 124 SAKL 127
               
Sbjct: 218 LILK 221

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 67.6 bits (165), Expect = 4e-13
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T +H +A     ++V  LL      K     Q+  G TPLH+A      E AK L+  G
Sbjct: 140 ATAMHRAAAKGNLKMVHILLF----YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG 195

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103
           A I  +     TPL ++            +   L    +
Sbjct: 196 ASIYIENKEEKTPLQVA------KGGLGLILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 70  KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRE 129
              + +   +L+    +        + +L   +  +  D + +T L H +   G  ++ E
Sbjct: 3   GCVSNIMICNLAYSGKLDE----LKERILADKSLATRTDQDSRTAL-HWACSAGHTEIVE 57

Query: 130 LLLWH 134
            LL  
Sbjct: 58  FLLQL 62

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  107 bits (271), Expect = 1e-26
 Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 31/164 (18%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDK---------------VEL--------EAQNMYG 41
            TPL ++      E++++ +   G D                 +               G
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199

Query: 42  ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN 101
            T LH+AA  G  E  KLL+     +  K  +G TPLH +  +    E+    + L+E  
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG--KEE--ACRILVENL 255

Query: 102 ADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS---EEQRKRR 142
            D  A +  G+T    +++      L EL    +    E+R+++
Sbjct: 256 CDMEAVNKVGQTAF-DVADEDILGYLEELQKKQNLLHSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  104 bits (261), Expect = 2e-25
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
                 +      E V  LLE       ++   N+ G T LH A  +   +  K L+ +G
Sbjct: 41  GAVFLAACSSGDTEEVLRLLE----RGADINYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
           A I    N G  PLH +             + L+   A   A ++EG TPLD 
Sbjct: 97  ANINQPDNEGWIPLHAAASCG----YLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 99.9 bits (250), Expect = 7e-24
 Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 28/153 (18%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T LH +   +  ++VK L+E    +   +   +  G  PLH AA  G  + A+ L++ G
Sbjct: 74  LTALHQACIDDNVDMVKFLVE----NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 65  AFIEAKANNGMTPLHLSVWY----------SIRSED-------------YATVKTLLEYN 101
           A + A  + G TPL ++             + +  D                 + L   +
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189

Query: 102 ADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            +       G T L H++   G  ++ +LL+  
Sbjct: 190 INDVRHAKSGGTAL-HVAAAKGYTEVLKLLIQA 221

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 91.0 bits (227), Expect = 1e-20
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
            +    +         ++  +      + + + +   G      A  +G  E    LL  
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVV----KRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLER 62

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           GA I     +G+T LH +       ++   VK L+E  A+ +  DNEG  PL
Sbjct: 63  GADINYANVDGLTALHQACID----DNVDMVKFLVENGANINQPDNEGWIPL 110

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.4 bits (176), Expect = 4e-14
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 34  LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYAT 93
           ++  +   +    +    G     +  +      + K ++G   L         S D   
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAAC-----SSGDTEE 55

Query: 94  VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           V  LLE  AD +  + +G T L H +    +  + + L+ +
Sbjct: 56  VLRLLERGADINYANVDGLTAL-HQACIDDNVDMVKFLVEN 95

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  100 bits (251), Expect = 1e-25
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              L  +A   + E V+ LLE       +  A N +G  P+ +    G  + A+LLL HG
Sbjct: 13  DAGLATAAARGQVETVRQLLE----AGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHG 67

Query: 65  AFIEAKANNGMT-PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           A         +T P+H +        D  T+  L    A     D  G+ P+
Sbjct: 68  AEPNCADPATLTRPVHDAAREG--FLD--TLVVLHRAGARLDVCDAWGRLPV 115

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.4 bits (210), Expect = 8e-20
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 7/99 (7%)

Query: 35  EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATV 94
                  +  L  AA  G  E  + LL  GA   A    G  P+ + +  S +       
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQ-----VA 60

Query: 95  KTLLEYNADCSAKDNEGKT-PLDHLSNGPGSAKLRELLL 132
           + LL + A+ +  D    T P+ H +   G      +L 
Sbjct: 61  ELLLLHGAEPNCADPATLTRPV-HDAAREGFLDTLVVLH 98

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.0 bits (209), Expect = 9e-20
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET-PLHMAAKNGCNEAAKLLLAH 63
           + P+ V      A++ + LL   G +       +    T P+H AA+ G  +   +L   
Sbjct: 46  RRPIQV-MMMGSAQVAELLLLH-GAEP---NCADPATLTRPVHDAAREGFLDTLVVLHRA 100

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103
           GA ++     G  P+ L+             + L     D
Sbjct: 101 GARLDVCDAWGRLPVDLAEEQ----GHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
              I     +    L  +           TV+ LLE  AD +A +  G+ P+  +  G
Sbjct: 2   SPGIHMLGGSSDAGLATAAARG----QVETVRQLLEAGADPNALNRFGRRPIQVMMMG 55

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (261), Expect = 2e-25
 Identities = 17/131 (12%), Positives = 41/131 (31%), Gaps = 10/131 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG-ETPLHMAAKNGCNEAAKLLLAH 63
            T L+ +      + VK  ++        L      G +T  + A            L+ 
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
                      ++ +H+++       D   +  LL+Y    +  ++    P   L+    
Sbjct: 152 IP-STFDLAILLSCIHITIKNG--HVD--MMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206

Query: 124 SAKLRELLLWH 134
             ++ + L  +
Sbjct: 207 DIEMLQALFKY 217

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =   99 bits (250), Expect = 5e-24
 Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 12/131 (9%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            +  + +   N   +V +LL                 E PLH AA     +  K+LL  G
Sbjct: 32  HSASYYAIADNNVRLVCTLLNA----GALKNLLE--NEFPLHQAATLEDTKIVKILLFSG 85

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG-KTPLDHLSNGPG 123
                  + G T L+ +V     +    TVK  ++ N         G KT   + +    
Sbjct: 86  LDDSQFDDKGNTALYYAVDS--GNMQ--TVKLFVKKNWRLMFYGKTGWKTSF-YHAVMLN 140

Query: 124 SAKLRELLLWH 134
              +    L  
Sbjct: 141 DVSIVSYFLSE 151

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 94.5 bits (236), Expect = 4e-22
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 14/130 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
                ++    K++ +KS L        +    +++G +  + A  +        LL  G
Sbjct: 2   MDLSRINTW--KSKQLKSFLS-----SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG 54

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A           PLH +        D   VK LL    D S  D++G T L + +   G+
Sbjct: 55  ALKNLL--ENEFPLHQAATLE----DTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGN 107

Query: 125 AKLRELLLWH 134
            +  +L +  
Sbjct: 108 MQTVKLFVKK 117

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 92.6 bits (231), Expect = 2e-21
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T  + +   N   IV   L                  + +H+  KNG  +   LLL + 
Sbjct: 130 KTSFYHAVMLNDVSIVSYFLSE-IPST----FDLAILLSCIHITIKNGHVDMMILLLDYM 184

Query: 65  AFIEAKANNGMTP-LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 111
                  +    P + L++       D   ++ L +Y+ +  + + E 
Sbjct: 185 TSTNTNNSLLFIPDIKLAIDNK----DIEMLQALFKYDINIYSANLEN 228

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 16/129 (12%), Positives = 38/129 (29%), Gaps = 17/129 (13%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETP-LHMAAKNGCNEAAKLLLAH 63
            + +H++      +++  LL+            N     P + +A  N   E  + L  +
Sbjct: 162 LSCIHITIKNGHVDMMILLLD----YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
                    N  +    +V       D    K ++E + +  +        +   +N   
Sbjct: 218 DI-------NIYSANLENVLLD----DAEIAKMIIEKHVEYKSDSYTKDLDI-VKNNKLD 265

Query: 124 SAKLRELLL 132
               +   L
Sbjct: 266 EIISKNKEL 274

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 66.8 bits (164), Expect = 1e-12
 Identities = 9/106 (8%), Positives = 31/106 (29%), Gaps = 16/106 (15%)

Query: 5   QTP-LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
             P + ++      E++++L +    +            +           E AK+++  
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFK-YDIN----------IYSANLENVLLDDAEIAKMIIEK 243

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 109
               ++ +      +      + + ++  +    L        K N
Sbjct: 244 HVEYKSDSYTKDLDIV----KNNKLDEIISKNKELRLMYVNCVKKN 285

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  100 bits (251), Expect = 3e-25
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 10/112 (8%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
             L  +A   + E V++LLE          A N YG  P+ +    G    A+LLL HGA
Sbjct: 14  DWLATAAARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA 68

Query: 66  FIEAKANNGMT-PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
                    +T P+H +           T+  L    A    +D  G+ P+D
Sbjct: 69  EPNCADPATLTRPVHDAAREG----FLDTLVVLHRAGARLDVRDAWGRLPVD 116

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 90.6 bits (226), Expect = 6e-22
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 10/113 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET-PLHMAAKNGCNEAAKLLLAH 63
           + P+ V      A + + LL   G +       +    T P+H AA+ G  +   +L   
Sbjct: 46  RRPIQV-MMMGSARVAELLLLH-GAEP---NCADPATLTRPVHDAAREGFLDTLVVLHRA 100

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
           GA ++ +   G  P+ L+             + L          ++      +
Sbjct: 101 GARLDVRDAWGRLPVDLAEEL----GHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 80.2 bits (199), Expect = 4e-18
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 36  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 95
           +        L  AA  G  E  + LL  GA   A  + G  P+ + +  S R       +
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSAR-----VAE 61

Query: 96  TLLEYNADCSAKDNEGKT-PL 115
            LL + A+ +  D    T P+
Sbjct: 62  LLLLHGAEPNCADPATLTRPV 82

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 5/53 (9%), Positives = 15/53 (28%), Gaps = 9/53 (16%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAA 57
           + P+ ++      ++ + L                 G     + A  G ++  
Sbjct: 112 RLPVDLAEELGHRDVARYLRAA-AGGT--------RGSNHARIDAAEGPSDIP 155

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  105 bits (263), Expect = 3e-25
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 15/140 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVE----LEAQNMYGETPLHMAAKNGCNEAAKLL 60
           +T LH  A  + AE  + L+     + +     + A +    TPL +A           L
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

Query: 61  LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE---YNADCSAKDNEGKTPLDH 117
           +  GA       +  + LH +        D+  +  +L       D    D  G T L  
Sbjct: 186 MKAGADPTIYNKSERSALHQAAANR----DFGMMVYMLNSTKLKGDIEELDRNGMTAL-M 240

Query: 118 L---SNGPGSAKLRELLLWH 134
           +   + G       +LL+  
Sbjct: 241 IVAHNEGRDQVASAKLLVEK 260

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  100 bits (251), Expect = 2e-23
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH +A  +   IVK L+   G++K   + Q+  G+TP+ +AA+ G  E    L+  G
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNK---DKQDEDGKTPIMLAAQEGRIEVVMYLIQQG 336

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103
           A +EA      T   L+        +   V        +
Sbjct: 337 ASVEAVDATDHTARQLAQAN--NHHN--IVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 5   QTPLHVSAGYNKAE---IVKSLLE----WPGNDKVELEAQNMYGETPLHMAAKNGCNEAA 57
            T L + A     +     K L+E       +     +++   G T LH AA+       
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295

Query: 58  KLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
           K L+   G+  + +  +G TP+ L+            V  L++  A   A D    T   
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIMLAAQEG----RIEVVMYLIQQGASVEAVDATDHTAR- 350

Query: 117 HLSNGPGSAKLRELLLWH 134
            L+       + ++    
Sbjct: 351 QLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 88.1 bits (219), Expect = 3e-19
 Identities = 20/133 (15%), Positives = 35/133 (26%), Gaps = 20/133 (15%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           Q  L  ++     +  ++ L               Y   P      NG +        + 
Sbjct: 38  QHSLLEASYDGYIKRQRNEL-------------QHYSLYPNPQGYGNGNDFLGDFNHTNL 84

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
                        LH     S     YA  + +   + +        +T L H      S
Sbjct: 85  QIPTEPEPESPIKLHTEAAGS-----YAITEPITRESVNI-IDPRHNRTVL-HWIASNSS 137

Query: 125 AKLRELLLWHSEE 137
           A+  E L+ H  +
Sbjct: 138 AEKSEDLIVHEAK 150

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 22/137 (16%), Positives = 35/137 (25%), Gaps = 15/137 (10%)

Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
           +  P     G     +                         LH  A  G     + +   
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTN-LQIP---TEPEPESPIKLHTEAA-GSYAITEPITRE 115

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYA------TVKTLLEYNADCSAKDNEGKTPLDH 117
              I     +  T LH        S + +        K  +   AD +A D +  TPL  
Sbjct: 116 SVNIIDP-RHNRTVLHWIASN--SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL-M 171

Query: 118 LSNGPGSAKLRELLLWH 134
           L+      +L   L+  
Sbjct: 172 LAVLARRRRLVAYLMKA 188

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TP+ ++A   + E+V  L++        +EA +    T   +A  N  +    +     
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQ----QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

Query: 65  AFIE 68
              E
Sbjct: 370 PERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 10/95 (10%), Positives = 23/95 (24%), Gaps = 15/95 (15%)

Query: 40  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
             +  L  A+ +G  +  +             +  + P          + +         
Sbjct: 36  SSQHSLLEASYDGYIKRQRNE---------LQHYSLYPNP----QGYGNGNDFLGDFNHT 82

Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
                +  + E    L H     GS  + E +   
Sbjct: 83  NLQIPTEPEPESPIKL-HTEAA-GSYAITEPITRE 115

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  104 bits (262), Expect = 5e-25
 Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 13/121 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLE---------WPGNDKVELEAQNMYGETPLHMAAKNGCNE 55
             PL++S       + K LL+          P ++   +    +     +  AA     E
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304

Query: 56  AAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
             +LL      +    N G          +      A  +  L  +A    +        
Sbjct: 305 VLQLLQEKLDEVVRSLNTGAGGAVKRKKKA----APAVKRMKLAPSAPVRTRSRSRARSS 360

Query: 116 D 116
            
Sbjct: 361 A 361

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  103 bits (259), Expect = 1e-24
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 8/121 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
           +TPL  +  +   E +  +++   +   + L+  N  G + LH A      + A   +  
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM 233

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD---CSAKDNEGKTPLDHLSN 120
           G  +  + N    PL+LSV  +         K LL+        +   + G T L     
Sbjct: 234 GIDVNMEDNEHTVPLYLSVRAA----MVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289

Query: 121 G 121
            
Sbjct: 290 W 290

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  101 bits (254), Expect = 6e-24
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGND------------------KVELEAQNMYGETPLH 46
           Q P+H++   NK ++V +L+E    +                  ++    ++  G+T LH
Sbjct: 85  QKPIHLAVMANKTDLVVALVE-GAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALH 143

Query: 47  MAAKNGCN--EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYN--- 101
                G    E  K+L+  GA   AK     TPL  ++ +  R+ +   +  +++     
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEF--RNRE--ALDLMMDTVPSK 199

Query: 102 --ADCSAKDNEGKTPL 115
                   + +G + L
Sbjct: 200 SSLRLDYANKQGNSHL 215

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 97.6 bits (244), Expect = 1e-22
 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 34/153 (22%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              +HV+A   + + V+ L+E      V    QN +G T LH+A K GC + AK L + G
Sbjct: 21  MEKIHVAARKGQTDEVRRLIET----GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD--------------------- 103
                   +G  P+HL+V       D   V  L+E   +                     
Sbjct: 77  EVHSLW--HGQKPIHLAVMA--NKTD--LVVALVEGAKERGQMPESLLNECDEREVNEIG 130

Query: 104 CSAKDNEGKTPLDHL--SNGPGSAKLRELLLWH 134
              K  +G+T L H     GP   ++ ++L+  
Sbjct: 131 SHVKHCKGQTAL-HWCVGLGPEYLEMIKILVQL 162

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.4 bits (233), Expect = 4e-21
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 30/149 (20%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T LH++  +   +  K L    G         +  G+ P+H+A      +    L+   
Sbjct: 54  CTALHLACKFGCVDTAKYLAS-VGEVH---SLWH--GQKPIHLAVMANKTDLVVALVEGA 107

Query: 65  A-----------------FIEAKAN----NGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103
                               E  ++     G T LH  V       +   +K L++  A 
Sbjct: 108 KERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLE--MIKILVQLGAS 165

Query: 104 CSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
            +AKD   +TPL   +    + +  +L++
Sbjct: 166 PTAKDKADETPL-MRAMEFRNREALDLMM 193

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 88.4 bits (220), Expect = 2e-19
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 31  KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSED 90
           K+     +      +H+AA+ G  +  + L+  G     +   G T LHL+  +     D
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF--GCVD 67

Query: 91  YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
             T K L       S     G+ P+ HL+       L   L+
Sbjct: 68  --TAKYLASVGEVHSLWH--GQKPI-HLAVMANKTDLVVALV 104

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              +  +A  +K E+++ L E       E+      G        K       ++ LA  
Sbjct: 291 LDFVPAAADPSKQEVLQLLQE----KLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346

Query: 65  AFIEAKANNGMTPLHLS 81
           A +  ++ +      +S
Sbjct: 347 APVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 57  AKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
             +            +  M  +H++            V+ L+E     + ++  G T L 
Sbjct: 3   GSMTDFPKLNRIKSDDENMEKIHVAARKG----QTDEVRRLIETGVSPTIQNRFGCTAL- 57

Query: 117 HLSNGPGSAKLRELLLWH 134
           HL+   G     + L   
Sbjct: 58  HLACKFGCVDTAKYLASV 75

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  101 bits (253), Expect = 7e-25
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 9/113 (7%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
             L  +A   + E+V+  ++   ND       N  G T LH A           L+  GA
Sbjct: 23  VLLLDAALTGELEVVQQAVKE-MNDP---SQPNEEGITALHNAICGANYSIVDFLITAGA 78

Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDH 117
            + +  ++G TPLH +   +    D      L+++ A   A   ++G T  + 
Sbjct: 79  NVNSPDSHGWTPLHCAASCN----DTVICMALVQHGAAIFATTLSDGATAFEK 127

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 98.5 bits (246), Expect = 6e-24
 Identities = 29/133 (21%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T LH +       IV  L+         + + + +G TPLH AA          L+ HG
Sbjct: 55  ITALHNAICGANYSIVDFLIT----AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110

Query: 65  AFIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
           A I A   ++G T       Y     D      L +        ++     L   S    
Sbjct: 111 AAIFATTLSDGATAFEKCDPYREGYAD--CATYLADVEQSMGLMNSGAVYALWDYSAE-- 166

Query: 124 SAKLRELLLWHSE 136
                EL     E
Sbjct: 167 --FGDELSFREGE 177

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 12/114 (10%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAA--KNGCNEAAKLLL 61
            TPLH +A  N   I  +L++        + A  +  G T        + G  + A  L 
Sbjct: 88  WTPLHCAASCNDTVICMALVQH----GAAIFATTLSDGATAFEKCDPYREGYADCATYLA 143

Query: 62  AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
                +    +  +  L     YS  +E    +      +     +D   +T  
Sbjct: 144 DVEQSMGLMNSGAVYALW---DYS--AEFGDELSFREGESVTVLRRDGPEETDW 192

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 85.0 bits (211), Expect = 4e-19
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 20  VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH 79
           ++S+L        +     +     L  AA  G  E  +  +            G+T LH
Sbjct: 1   MRSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 59

Query: 80  LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
            ++       +Y+ V  L+   A+ ++ D+ G TPL
Sbjct: 60  NAICG----ANYSIVDFLITAGANVNSPDSHGWTPL 91

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 8/82 (9%), Positives = 19/82 (23%), Gaps = 7/82 (8%)

Query: 5   QTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
            T       Y +  A+    L     + +  +   N      L   +    +E       
Sbjct: 122 ATAFEKCDPYREGYADCATYLA----DVEQSMGLMNSGAVYALWDYSAEFGDEL-SFREG 176

Query: 63  HGAFIEAKANNGMTPLHLSVWY 84
               +  +     T    +  +
Sbjct: 177 ESVTVLRRDGPEETDWWWAALH 198

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 6/77 (7%)

Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA-AKLLLA 62
           A   L   +     E+          + V +  ++   ET    AA +G      +    
Sbjct: 156 AVYALWDYSAEFGDELSFRE-----GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFG 210

Query: 63  HGAFIEAKANNGMTPLH 79
               ++ + +      H
Sbjct: 211 LFPRVKPQRSKVKHHHH 227

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  100 bits (252), Expect = 1e-24
 Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           Q  L      N  +     +   G         N      L  ++  G  +  + ++   
Sbjct: 6   QVSLPPGKRTNLRKTGSERIA-HGMRVKF----NPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
                  + G+T LH +V           VK L+++  + +A D++G TPL
Sbjct: 61  DDPSLPNDEGITALHNAVCAG----HTEIVKFLVQFGVNVNAADSDGWTPL 107

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 99.6 bits (249), Expect = 3e-24
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 12/133 (9%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              L  S+   + ++V+ ++    +D       N  G T LH A   G  E  K L+  G
Sbjct: 38  LALLLDSSLEGEFDLVQRIIY-EVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFG 93

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN---EGKTPLDHLSNG 121
             + A  ++G TPLH +   +    +    K L+E  A   A      +           
Sbjct: 94  VNVNAADSDGWTPLHCAASCN----NVQVCKFLVESGAAVFAMTYSDMQTAADK-CEEME 148

Query: 122 PGSAKLRELLLWH 134
            G  +  + L   
Sbjct: 149 EGYTQCSQFLYGV 161

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 82.7 bits (205), Expect = 3e-18
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
           G+  L    +    +     +AHG  ++      +  L  S        ++  V+ ++  
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEG----EFDLVQRIIYE 59

Query: 101 NADCSAKDNEGKTPL 115
             D S  ++EG T L
Sbjct: 60  VDDPSLPNDEGITAL 74

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 82.3 bits (204), Expect = 4e-18
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 10/127 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH +A  N  ++ K L+E  G     +   +M          + G  + ++ L    
Sbjct: 104 WTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

Query: 65  AFIEAKANNGMTPLHL-----SVWYSIRSEDYATVKTLLEYNA----DCSAKDNEGKTPL 115
             +       +  L            ++  D  T+    + +          D EG  P 
Sbjct: 163 EKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPR 222

Query: 116 DHLSNGP 122
           + L   P
Sbjct: 223 NLLGLYP 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 96.8 bits (241), Expect = 5e-23
 Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 25/152 (16%)

Query: 5   QTPLHVSAGYNKAEIVKSLLE---------WPGNDKVELEAQNMYGETPLHMAAKNGCNE 55
            + LH++      + VK L+E              +        +GE PL +AA     +
Sbjct: 91  HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150

Query: 56  AAKLLLAHG---AFIEAKANNGMTPLHLSVWYSIRSEDYA------------TVKTLLEY 100
               LL +    A +EA  + G T LH  V  +  S + +                L   
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210

Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
                  +++G TPL  L+   G  ++   +L
Sbjct: 211 VQLEEISNHQGLTPL-KLAAKEGKIEIFRHIL 241

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 86.8 bits (215), Expect = 1e-19
 Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 31/140 (22%)

Query: 5   QTPLHVSA---GYNKAEIVKSLLE-------WPGNDKVELEAQNMYGETPLHMAAKNGCN 54
           +T L  +           +  LL+              +   +   G + LH+A +    
Sbjct: 44  KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103

Query: 55  EAAKLLLAHGAFIEAKANN-------------GMTPLHLSVWYSIRSEDYATVKTLLE-- 99
           +  KLL+ +GA +  +A               G  PL L+        D   V  LLE  
Sbjct: 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK--QWD--VVTYLLENP 159

Query: 100 -YNADCSAKDNEGKTPLDHL 118
              A   A D+ G T L H 
Sbjct: 160 HQPASLEATDSLGNTVL-HA 178

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.5 bits (178), Expect = 1e-14
 Identities = 24/130 (18%), Positives = 36/130 (27%), Gaps = 22/130 (16%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEW----PGNDKVELEAQNMYGETPLHMAA---KNGCNEAA 57
           +  L         E +  LLE+              +   G+T L  A    ++G N   
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 58  KLLLAHG-----------AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA 106
             LL              A    +   G + LH     +I       VK L+E  AD   
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALH----IAIEKRSLQCVKLLVENGADVHL 118

Query: 107 KDNEGKTPLD 116
           +         
Sbjct: 119 RACGRFFQKH 128

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 21/114 (18%)

Query: 40  YGETPLHMAAKNGCNEAAKLLLAH--------GAFIEAKANNGMTPLHLSVWYSIRSEDY 91
           +    L      G  E    LL +              + + G T L  +V    +    
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNL-QDGVN 59

Query: 92  ATVKTLLEY-----------NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           A +  LL+            NA C+ +  +G + L H++    S +  +LL+ +
Sbjct: 60  ACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL-HIAIEKRSLQCVKLLVEN 112

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 91.3 bits (228), Expect = 8e-23
 Identities = 45/98 (45%), Positives = 56/98 (57%), Gaps = 8/98 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPLH++A     E+VK LLE  G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEA-GADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
           A + AK  NG TPLHL+        +   VK LLE  A
Sbjct: 59  ADVNAKDKNGRTPLHLAARNG--HLE--VVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 85.9 bits (214), Expect = 6e-21
 Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 4/75 (5%)

Query: 41  GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
           G TPLH+AA+NG  E  KLLL  GA + AK  NG TPLHL+        +   VK LLE 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLE--VVKLLLEA 57

Query: 101 NADCSAKDNEGKTPL 115
            AD +AKD  G+TPL
Sbjct: 58  GADVNAKDKNGRTPL 72

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 69.7 bits (172), Expect = 4e-15
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 5  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
          +TPLH++A     E+VK LLE  G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 36 RTPLHLAARNGHLEVVKLLLE-AGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

Query: 65 AF 66
          A+
Sbjct: 92 AY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.7 bits (102), Expect = 1e-05
 Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 73  NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
           NG TPLHL+            VK LLE  AD +AKD  G+TPL
Sbjct: 1   NGRTPLHLAARN----GHLEVVKLLLEAGADVNAKDKNGRTPL 39

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.4 bits (230), Expect = 3e-22
 Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 3/113 (2%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              +  +A     E    L E  G +  E   ++      L         + +  L+  G
Sbjct: 7   YRTVSAAAMLGTYEDFLELFE-KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 65  AFIEAKANNGMTPLHLSVWYSIRS--EDYATVKTLLEYNADCSAKDNEGKTPL 115
           A I+++   G T                    K  LE  AD +A     K  +
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 90.9 bits (226), Expect = 1e-21
 Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 14/136 (10%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN------EAAKL 59
             L  +    + +I   L+        +++++   G T      + G N      E  K+
Sbjct: 44  DVLRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKI 99

Query: 60  LLAHGAFIEAKANNGMTPLHLSVWY--SIRSEDYATVKTLL-EYNADCSAKDNEGKTPLD 116
            L  GA I A        +  +++      +E     K +  +       KD  G T L 
Sbjct: 100 FLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL- 158

Query: 117 HLSNGPGSAKLRELLL 132
                       +++ 
Sbjct: 159 EFVKRCQKPIALKMME 174

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 21/118 (17%)

Query: 5   QTPLHVSAGYNK------AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 58
            T                 E+ K  LE       ++ A     +  +     N   +  +
Sbjct: 76  TTLFFPLFQGGGNDITGTTELCKIFLEK----GADITALYKPYKIVVFKNIFNYFVDENE 131

Query: 59  -------LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 109
                  +    G  +  K   G+T L     +  R +    +K + +Y    + K+N
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLTALE----FVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 36  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 95
           +  M     +  AA  G  E    L   G   + ++      L+  +  +     Y    
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGY-EDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 96  TLLEYNADCSAKDNEGKTPL 115
            L+   AD  ++  EG T  
Sbjct: 60  FLINKGADIKSRTKEGTTLF 79

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 5   QTPLHVSAGYNKAE------IVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 58
           +  +  +      +      + K +    G     L  ++ +G T L    +     A K
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTALEFVKRCQKPIALK 171

Query: 59  LLLAHGAFIEAKANN 73
           ++  +      K N+
Sbjct: 172 MMEDYIKKYNLKENS 186

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 89.9 bits (224), Expect = 3e-22
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 12  AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 71
           + ++       L+   G+               L  AA+ G ++  ++L+A+GA + AK 
Sbjct: 2   SSHHHHHHSSGLVP-RGSHM------GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54

Query: 72  NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
            NG TPLHL+        +   VK LLE  AD  A+D  GKT    +S   G+  L E+L
Sbjct: 55  KNGSTPLHLAARNG--HLE--VVKLLLEAGADVXAQDKFGKTAF-DISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 81.9 bits (203), Expect = 3e-19
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              L  +A   + + V+ L+   G D     A++  G TPLH+AA+NG  E  KLLL  G
Sbjct: 25  GKKLLEAARAGQDDEVRILMAN-GADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 65  AFIEAKANNGMTPLHLSVWY 84
           A + A+   G T   +S+  
Sbjct: 81  ADVXAQDKFGKTAFDISIDN 100

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 48  AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
            + +  +  +  L+  G+ + +        L  +       +D   V+ L+   AD +AK
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAG--QDD--EVRILMANGADVAAK 53

Query: 108 DNEGKTPL 115
           D  G TPL
Sbjct: 54  DKNGSTPL 61

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 90.6 bits (225), Expect = 8e-21
 Identities = 34/142 (23%), Positives = 52/142 (36%), Gaps = 31/142 (21%)

Query: 5   QTPLHV---SAGYNKAEIVKSLLE-------WPGNDKVELEAQNMYGETPLHMAAKNGCN 54
           +T L     +    + + +  LL+                      G+T LH+A +    
Sbjct: 55  KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNM 114

Query: 55  EAAKLLLAHGAFIEAKANN--------------GMTPLHLSVWYSIRSEDYATVKTLLE- 99
               LL+ +GA ++A AN               G  PL L+   +      A VK LL+ 
Sbjct: 115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN----QLAIVKFLLQN 170

Query: 100 --YNADCSAKDNEGKTPLDHLS 119
               AD SA+D+ G T L  L 
Sbjct: 171 SWQPADISARDSVGNTVLHALV 192

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 81.4 bits (201), Expect = 2e-17
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 29/131 (22%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN---------- 54
           + PL ++A  N+  IVK LL+       ++ A++  G T LH   +   N          
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQN-SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207

Query: 55  ------EAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 108
                      L       E     G+TPL L+            +  +L+       ++
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG----KIGVLAYILQ-------RE 256

Query: 109 NEGKTPLDHLS 119
                   H +
Sbjct: 257 IHEPECR-HAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 77.5 bits (191), Expect = 3e-16
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 5   QTPLHVSAGYNKAEIVKSLLE---WPGNDKVELEAQNM-YGETPLHMA---AKNGCNEAA 57
           +  +  +   +  + ++SLL           + E ++   G+T L  A     NG N+  
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 58  KLLLAHGAFIEA-----------KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA 106
            LLL      ++               G T LH+++       +   V  L+E  AD  A
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER----RNMTLVTLLVENGADVQA 129

Query: 107 KDNEGKTPL 115
             N      
Sbjct: 130 AANGDFFKK 138

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.6 bits (160), Expect = 4e-12
 Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 19/92 (20%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKV------------ELEAQNMYGETPLHMAAKNG 52
            T LH         +  +       +++              E  N  G TPL +AA +G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244

Query: 53  CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 84
                  +L           +     H +  +
Sbjct: 245 KIGVLAYILQREI-------HEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 21/119 (17%)

Query: 35  EAQNMYGETPLHMAAKNGCNEAAKLLL-------AHGAFIEAK-ANNGMTPLHLSVWYSI 86
           +   +Y    +  A      +  + LL             E K    G T L  ++  ++
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML-NL 65

Query: 87  RSEDYATVKTLLEY-----------NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            +    T+  LL+            NA  +    +G+T L H++    +  L  LL+ +
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL-HIAIERRNMTLVTLLVEN 123

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.4 bits (118), Expect = 9e-07
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 11/48 (22%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 52
            TPL ++A   K  ++  +L+           + ++     H AA + 
Sbjct: 234 LTPLALAASSGKIGVLAYILQ-----------REIHEPECRHAAAHHH 270

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 89.8 bits (223), Expect = 1e-20
 Identities = 39/177 (22%), Positives = 60/177 (33%), Gaps = 39/177 (22%)

Query: 5   QTPLHVSA---GYNKAEIVKSLLEWPGNDKVELEAQNM-------YGETPLHMAAKNGCN 54
           +T L  +       + + +  LL+         E  N         G+T LH+A +  C 
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 55  EAAKLLLAHGAFIEAKANN--------------GMTPLHLSVWYSIRSEDYATVKTLLE- 99
              +LL+  GA + A+A                G  PL L+      +     V  L E 
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA----CTNQPHIVHYLTEN 162

Query: 100 --YNADCSAKDNEGKTPL--------DHLSNGPGSAKLRELLLWHSEEQRKRRALEA 146
               AD   +D+ G T L        +   N     K+ +LLL    +      LEA
Sbjct: 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA 219

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.5 bits (191), Expect = 3e-16
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 25/129 (19%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN---------E 55
           + PL ++A  N+  IV  L E  G+ + +L  Q+  G T LH       N         +
Sbjct: 141 ELPLSLAACTNQPHIVHYLTE-NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

Query: 56  AAKLLLAHGAFIEAKA-------NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 108
              LLL   A +           N+G++PL ++     +       + ++         D
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG-KIG---IFQHIIRRE----IAD 251

Query: 109 NEGKTPLDH 117
                   H
Sbjct: 252 AAAHHHHHH 260

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.2 bits (172), Expect = 8e-14
 Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 41/168 (24%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEW------PGNDKVELEAQNMYGETPLHMAAKN---GCNE 55
           +  L         + ++ LL +         D+     +   G+T L  A  N   G N+
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE--EFREPSTGKTCLPKALLNLSAGRND 63

Query: 56  AAKLLLAHG-----------AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 104
              +LL              +        G T LH     +I       V+ L+E  AD 
Sbjct: 64  TIPILLDIAEKTGNMREFINSPFRDVYYRGQTALH----IAIERRCKHYVELLVEKGADV 119

Query: 105 SAKDN--------------EGKTPLDHLSNGPGSAKLRELLLWHSEEQ 138
            A+                 G+ PL  L+       +   L  +  +Q
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPL-SLAACTNQPHIVHYLTENGHKQ 166

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 21/116 (18%)

Query: 38  NMYGETPLHMAAKNGCNEA----AKLLLAHGAFIEAK----ANNGMTPLHLSVWYSIRSE 89
            ++    L      G  +        LL H   +  +     + G T L  ++  ++ + 
Sbjct: 2   KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALL-NLSAG 60

Query: 90  DYATVKTLLEY-----------NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
              T+  LL+            N+        G+T L H++         ELL+  
Sbjct: 61  RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTAL-HIAIERRCKHYVELLVEK 115

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 85.1 bits (210), Expect = 2e-18
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 13/192 (6%)

Query: 2   QMAQTPLHVSAGYNKAEIVKSLLEWPG---NDKVELEAQNMYGETPLHMAAKNGCNEAAK 58
             +       +  +  + V           N  V     + +G TPLH        E  K
Sbjct: 94  GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV-----DEHGNTPLHWLTSIANLELVK 148

Query: 59  LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC-SAKDNEGKTPLDH 117
            L+ HG+      N G + L  +V     + D  T + LL+Y   C   +D+  +T L H
Sbjct: 149 HLVKHGSNRLYGDNMGESCLVKAVKSV-NNYDSGTFEALLDYLYPCLILEDSMNRTILHH 207

Query: 118 LSNGPGSAKLRELLLWHSE---EQRKRRALEACSETKAKMDELENELSNIVGLHELKIQL 174
           +    G         ++ +       ++          + +   N+ +       L+   
Sbjct: 208 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 267

Query: 175 RKWAKGMLLDER 186
            KW    +L+ +
Sbjct: 268 LKWIIANMLNAQ 279

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 76.6 bits (188), Expect = 1e-15
 Identities = 16/78 (20%), Positives = 30/78 (38%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +          + + +   L+        L AQ+  G+T L++AA+ G       LL +G
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 65  AFIEAKANNGMTPLHLSV 82
           A       +G+ P+    
Sbjct: 307 ADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 70.8 bits (173), Expect = 1e-13
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 16/124 (12%)

Query: 5   QTPLH------------VSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG 52
           +T LH             +A Y    ++  +++           +        +   K+ 
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261

Query: 53  CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGK 112
             E   L       + A+ +NG T L+     + R  + + V  LL+Y AD    +  G 
Sbjct: 262 ILENLDLKWIIANMLNAQDSNGDTCLN----IAARLGNISIVDALLDYGADPFIANKSGL 317

Query: 113 TPLD 116
            P+D
Sbjct: 318 RPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.1 bits (166), Expect = 7e-13
 Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 19/145 (13%)

Query: 5   QTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA----KNGCNEAA 57
           ++ L  +        +   ++LL++       L  ++    T LH         GC+ AA
Sbjct: 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPC---LILEDSMNRTILHHIIITSGMTGCSAAA 221

Query: 58  K--------LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 109
           K         ++           N             +      +          +A+D+
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281

Query: 110 EGKTPLDHLSNGPGSAKLRELLLWH 134
            G T L +++   G+  + + LL +
Sbjct: 282 NGDTCL-NIAARLGNISIVDALLDY 305

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.6 bits (162), Expect = 2e-12
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 41  GETPLHMAAKNG---CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 97
            ET LH+A ++           L+ +   ++ +   G T LH    Y   +++   +K L
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH----YCCLTDNAECLKLL 224

Query: 98  LEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
           L   A     +  G+TPLD ++         ELL 
Sbjct: 225 LRGKASIEIANESGETPLD-IAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH++        +  ++++   +   L+ Q   G T LH        E  KLLL   
Sbjct: 170 ETALHLAVRSVDRTSL-HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228

Query: 65  AFIEAKANNGMTPLHLSV 82
           A IE    +G TPL ++ 
Sbjct: 229 ASIEIANESGETPLDIAK 246

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T LH     + AE +K LL      K  +E  N  GETPL +A +       +LL    
Sbjct: 206 STALHYCCLTDNAECLKLLLRG----KASIEIANESGETPLDIAKRLKHEHCEELLT--- 258

Query: 65  AFIEAKANNGMTPLHLSVWYS 85
                +A +G    H+ V Y 
Sbjct: 259 -----QALSGRFNSHVHVEYE 274

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 65.7 bits (160), Expect = 6e-12
 Identities = 11/108 (10%), Positives = 25/108 (23%), Gaps = 7/108 (6%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
               ++A      ++  L E        +            +AA+NG       L     
Sbjct: 130 QAFRLAAENGHLHVLNRLCEL-APT-EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 187

Query: 66  FIEAKA--NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 111
                              W ++    +  +  LL+     +  +   
Sbjct: 188 TEATAMIQAENYYAFR---WAAVGRGHHNVINFLLDCPVMLAYAEIHE 232

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 13/113 (11%), Positives = 24/113 (21%), Gaps = 12/113 (10%)

Query: 15  NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA--KAN 72
           +  + +  LL         ++           +AA+NG       L              
Sbjct: 106 SALDTLCLLLT----SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 161

Query: 73  NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD--NEGKTPLDHLSNGPG 123
                  L+            +  L E     +      E        + G G
Sbjct: 162 ENYHAFRLAAEN----GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.0 bits (127), Expect = 7e-08
 Identities = 10/81 (12%), Positives = 18/81 (22%), Gaps = 1/81 (1%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
               ++A      ++  L E     +     Q          A   G +     LL    
Sbjct: 165 HAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 66  FIEAKANNGMTPLHLSVWYSI 86
            +     +        V   I
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFI 244

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 53.0 bits (127), Expect = 9e-08
 Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 23/95 (24%)

Query: 33  ELEAQNMYGETPLHMAAKNGCN---EAAKLLLAHGAFIEAKANNGMTPL-------HLSV 82
           +   + +  E    +AA  GC+   +   LLL     ++                 HL V
Sbjct: 84  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 143

Query: 83  WYSIRSEDYATVKTLLEYNADCSAKD--NEGKTPL 115
                      +  L E            E     
Sbjct: 144 -----------LNRLCELAPTEIMAMIQAENYHAF 167

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 5   QTPLHVSAGYNKA---EIVKSLLEWPG-NDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
              L      N     + ++ LL  PG                 L +A + G   A  LL
Sbjct: 279 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 338

Query: 61  LAHGAFIEAKANNG 74
           L+  + +     N 
Sbjct: 339 LSIPSVLALTKANN 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 15/147 (10%), Positives = 34/147 (23%), Gaps = 32/147 (21%)

Query: 12  AGYNKAEIVKSLLEW-----PGNDKVELEAQNMY-----------GETPLHMAAKNGCNE 55
             Y +  +   +          +D  +L   +             G   L    +     
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 292

Query: 56  AAKLL--------LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
               +        +   A       +    L L++       +      LL   +  +  
Sbjct: 293 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG----NQGACALLLSIPSVLALT 348

Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWH 134
                    +++   G   LR + L H
Sbjct: 349 KANN----YYINETGGRLDLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 7/61 (11%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              L ++           LL  P    + L   N       ++    G  +   + L H 
Sbjct: 320 NELLRLALRLGNQGACALLLSIPSV--LALTKAN-----NYYINETGGRLDLRAVALEHH 372

Query: 65  A 65
            
Sbjct: 373 H 373

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 5   QTPLH--VSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           +  LH  V      +  +   +   G     L+A+   G T LH AA     +  KLLL 
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAADGNTALHYAALYNQPDCLKLLLK 247

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 118
             A +      G T L ++       + +   + LLE      A+         H+
Sbjct: 248 GRALVGTVNEAGETALDIAR-----KKHHKECEELLE-----QAQAGT-FAFPLHV 292

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 6   TPLH--VSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
             LH  V      +  +   +   G     L+A+   G T LH AA     +  KLLL  
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAADGNTALHYAALYNQPDCLKLLLKG 229

Query: 64  GAFIEAKANNGMTPLHLSV 82
            A +      G T L ++ 
Sbjct: 230 RALVGTVNEAGETALDIAR 248

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 4e-10
 Identities = 53/438 (12%), Positives = 110/438 (25%), Gaps = 128/438 (29%)

Query: 79  HLSVWYSIRSEDYATVKTLLEYNADCSAKDNE------------GKTPLDHLSNGPGSAK 126
           H+   +      Y   K +L    D    + +             K  +DH+     +  
Sbjct: 6   HMD--FETGEHQY-QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 127 LRELLLWHSEEQRKR---RALEA----------------CSETKAKMDELENELSNI--- 164
               L W    +++    + +E                   +          +   +   
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 165 --------VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKT--- 213
                   V   +  ++LR+      L E R A  + +           G  G+GKT   
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQA-----LLELRPAKNVLI------D----GVLGSGKTWVA 167

Query: 214 -MVARILGRLLYMV-GIL---------PTDRVTEVQ----RTDLVGEFVGHTGPKTRRRI 258
             V         M   I          P   +  +Q    + D             + RI
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 259 KEAEGGI--LFVDEAYR--LIPMQKADD-KDYGIEALEEIMSVMDGG-KVVVIFAGYSEP 312
              +  +  L   + Y   L+ +    + ++       +  +  +   K+++    + + 
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVL---LNVQN------AKAWNAFNLSCKILLT-TRFKQV 277

Query: 313 MKRVIASNEGFCRRVTKFFHFNDFNSEEL-AKILHIKMNNQTEDSL----LYGFKLHSSC 367
              + A+                   + L  K L  +        L    L         
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREVLTTNPRR--L 330

Query: 368 SMDAIAALIEKETTEKQR-REMNGGLVDPMLVNARENLD--LRLSFDCLDTDELR----- 419
           S+  IA  I          + +N            + L   +  S + L+  E R     
Sbjct: 331 SI--IAESIRDGLATWDNWKHVN-----------CDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 420 -TITLEDLEAGLKLLLRL 436
            ++          LL  +
Sbjct: 378 LSVFPPSAHIPTILLSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 54/397 (13%), Positives = 106/397 (26%), Gaps = 155/397 (39%)

Query: 9   HVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE 68
           H S      E+   LL++      +L         P                       E
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDL---------PR----------------------E 321

Query: 69  AKANNGMTPLHLS-VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKL 127
               N   P  LS +  SIR +  AT       N D        ++ L+ L      A+ 
Sbjct: 322 VLTTN---PRRLSIIAESIR-DGLATWDNWKHVNCD--KLTTIIESSLNVLE----PAEY 371

Query: 128 REL-------------------LLWHSEEQRKRRALEACSETKAKMDELENEL------- 161
           R++                   L+W    +          +    +++L           
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKS---------DVMVVVNKLHKYSLVEKQPK 422

Query: 162 SNIVGLHELKIQLRKWAKGM------LLDERRKALGLKVGARRPPHM-----AFLGNPGT 210
            + + +  + ++L+   +        ++D              PP++     + +G    
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---- 478

Query: 211 GKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVD 269
                        + +  I   +R+T  +                           +F+D
Sbjct: 479 -------------HHLKNIEHPERMTLFRM--------------------------VFLD 499

Query: 270 EAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEG-FCRRVT 328
             +R +  QK         A     S+++    +     Y    K  I  N+  + R V 
Sbjct: 500 --FRFLE-QKIRHDST---AWNASGSILN---TLQQLKFY----KPYICDNDPKYERLVN 546

Query: 329 KFFHF------NDFNSEELAKILHIKMNNQTEDSLLY 359
               F      N   S+    +L I +    ED  ++
Sbjct: 547 AILDFLPKIEENLICSKYT-DLLRIALMA--EDEAIF 580

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 27/117 (23%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
             TPL  +   N        L   G +   +   +  G  PLH A   G    A L L  
Sbjct: 235 NATPLIQATAANSLLAC-EFLLQNGAN---VNQADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 120
           GA + A+ + G  PL +           A + TLL   A     +       D    
Sbjct: 291 GADLGARDSEGRDPLTI-----AMETANADIVTLLR-LAKMREAEAAQGQAGDETYL 341

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 39/221 (17%)

Query: 161 LSNIVGLHELKIQLRKWAKG-MLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARIL 219
           L  + G     ++L+ W        +       K G+         G PG GKT  A ++
Sbjct: 38  LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 97

Query: 220 GRLL-YMV---------GI-LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFV 268
            + L Y +            L    V        V  +  H         K     ++ +
Sbjct: 98  AQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHF---VIIM 154

Query: 269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG--YSEPMKRVIASNEGFCRR 326
           DE      M   D        + ++          +I      + P  R           
Sbjct: 155 DEV---DGMSGGD-----RGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDR------- 199

Query: 327 VTKFFHFNDFNSEELAKIL-------HIKMNNQTEDSLLYG 360
           V     F   ++  +   L         K++    D L+  
Sbjct: 200 VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 240

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 37/251 (14%), Positives = 71/251 (28%), Gaps = 32/251 (12%)

Query: 192 LKVGARRPPHMAFLGNPGTGKTMVARILGRLL------YMVGILPTDRVTEVQRTDLVGE 245
           L+      P    LG PGTGKT+  R L  L         V I              +  
Sbjct: 37  LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96

Query: 246 FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM-------QKADDKDYGIEALEEIMSVMD 298
            +    P+      E    ++       L            A D       L +    + 
Sbjct: 97  SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLG 156

Query: 299 GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLL 358
             ++ ++  G+++ +   +  +            F+ +  +++  IL  +          
Sbjct: 157 AFRIALVIVGHNDAVLNNLDPSTR-GIMGKYVIRFSPYTKDQIFDILLDR---------A 206

Query: 359 YGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDTDE 417
                  S S D +  + +    +       G        +AR  +D L  S      + 
Sbjct: 207 KAGLAEGSYSEDILQMIADITGAQTPLDTNRG--------DARLAIDILYRSAYAAQQNG 258

Query: 418 LRTITLEDLEA 428
            + I  ED+  
Sbjct: 259 RKHIAPEDVRK 269

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 21/156 (13%)

Query: 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 220
             +I G  +   Q+++    + L  R  AL   +G + P  +   G PGTGKT++AR + 
Sbjct: 203 YDDIGGCRKQLAQIKE---MVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

Query: 221 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG---ILFVDEAYRLIPM 277
                           +   +++ +  G +    R+  +EAE     I+F+DE   + P 
Sbjct: 260 NETGA-------FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP- 311

Query: 278 QKADDKDYGIEA--LEEIMSVMDG----GKVVVIFA 307
            K +     +E   + +++++MDG      V+V+ A
Sbjct: 312 -KREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 16/66 (24%)

Query: 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARI 218
             L  +VG  E+  +L+ + +                 +  PH+ F G PGTGKT  A  
Sbjct: 14  RTLDEVVGQDEVIQRLKGYVER----------------KNIPHLLFSGPPGTGKTATAIA 57

Query: 219 LGRLLY 224
           L R L+
Sbjct: 58  LARDLF 63

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 16/66 (24%)

Query: 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARI 218
             L  +VG  E+  +L+ + +                 +  PH+ F G PGTGKT  A  
Sbjct: 14  RTLDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIA 57

Query: 219 LGRLLY 224
           L R L+
Sbjct: 58  LARDLF 63

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Length = 500

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 17/81 (20%)

Query: 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT------DLVGEFVGHTGPKT 254
            +  LG PG  K+++AR L             R  E   T      ++ G          
Sbjct: 43  SVFLLGPPGIAKSLIARRLKFAFQNA------RAFEYLMTRFSTPEEVFGPLSIQALKDE 96

Query: 255 RRRIKEAEGG-----ILFVDE 270
            R  +   G      I+F+DE
Sbjct: 97  GRYERLTSGYLPEAEIVFLDE 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	438
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	100.0
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	100.0
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	100.0
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	100.0
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	100.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	100.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	100.0
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.98
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.98
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.97
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.97
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.97
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.96
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.96
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.96
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.96
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.96
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.96
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.95
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.95
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.95
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.95
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.94
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.93
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.92
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.92
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.92
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.91
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.91
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
3pvs_A	447	Replication-associated recombination protein A; ma	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.89
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.88
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.88
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.88
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.88
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.88
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.88
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.88
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.88
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.88
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.87
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.87
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.87
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.87
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.86
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.86
2etb_A	256	Transient receptor potential cation channel subfam	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.86
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.86
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.86
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.86
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.86
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.86
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.86
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.86
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.86
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.85
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.85
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.85
2rfa_A	232	Transient receptor potential cation channel subfa	99.85
2pnn_A	273	Transient receptor potential cation channel subfa	99.85
2rfa_A	232	Transient receptor potential cation channel subfa	99.85
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.85
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.84
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.84
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.84
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.84
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.84
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.84
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.84
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.84
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.84
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.84
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.84
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.83
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.83
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.83
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.83
2etb_A	256	Transient receptor potential cation channel subfam	99.83
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.83
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.83
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.82
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.82
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.82
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.82
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.82
2pnn_A	273	Transient receptor potential cation channel subfa	99.82
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.82
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.82
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.82
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.82
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.81
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.81
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.8
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.8
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.8
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.8
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.8
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.8
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.8
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.8
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.8
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.8
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.79
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.79
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.79
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.79
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.79
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.79
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.79
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.78
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.78
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.78
3bos_A	242	Putative DNA replication factor; P-loop containing	99.78
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.77
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.77
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.77
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.77
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.77
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.76
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.76
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.76
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.76
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.76
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.76
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.75
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.75
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.75
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.75
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.75
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.74
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.74
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.74
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.74
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.74
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.73
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.73
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.72
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.72
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.72
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.72
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.72
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.71
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.7
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.7
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.7
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.7
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.69
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.69
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.69
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.68
3co5_A	143	Putative two-component system transcriptional RES	99.68
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.68
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.67
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.67
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.66
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.66
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.66
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.64
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.64
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.63
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.62
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.58
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.51
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.5
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.48
3f8t_A	506	Predicted ATPase involved in replication control,	99.39
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	99.1
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.05
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.04
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.99
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.97
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	98.91
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.89
2fna_A	357	Conserved hypothetical protein; structural genomic	98.88
2qgz_A	308	Helicase loader, putative primosome component; str	98.79
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.76
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.72
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.65
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.64
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.45
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.42
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.33
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	98.31
2krk_A	86	26S protease regulatory subunit 8; structural geno	98.28
3kw6_A	78	26S protease regulatory subunit 8; structural geno	98.19
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.11
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.88
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.86
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.85
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.85
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.73
3aji_B	83	S6C, proteasome (prosome, macropain) 26S subunit,	97.72
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.71
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.71
3vlf_B	88	26S protease regulatory subunit 7 homolog; heat re	97.71
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.71
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.7
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.67
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.63
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.63
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.63
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.6
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.6
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.58
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.58
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.57
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.54
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.53
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.51
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.51
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.49
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.44
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.43
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.42
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.42
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.4
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.38
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	97.35
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.34
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.32
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.29
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.29
1via_A	175	Shikimate kinase; structural genomics, transferase	97.29
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.29
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.28
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.28
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.28
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.26
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.26
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.25
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	97.23
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.2
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.2
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.19
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.17
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.15
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.14
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.14
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.14
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	97.14
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.12
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.1
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.1
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.09
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.09
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.09
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.07
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.07
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.07
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.07
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.06
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.05
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.03
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.03
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.02
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.02
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.02
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.01
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.01
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.01
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.0
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.0
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.0
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.98
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.98
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.96
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.96
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.96
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.95
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.95
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.94
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.93
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.93
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.93
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.91
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.91
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.9
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.88
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.87
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.85
3io5_A	333	Recombination and repair protein; storage dimer, i	96.83
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.82
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.78
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.77
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.77
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.75
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.73
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	96.7
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.69
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.68
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.66
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.66
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.63
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.62
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.6
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.6
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.57
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	96.57
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.56
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.53
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.53
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.52
3b6e_A	216	Interferon-induced helicase C domain-containing P;	96.52
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.51
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.49
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.49
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.48
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.48
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.46
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	96.44
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	96.42
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.42
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.4
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.36
2dzn_B	82	26S protease regulatory subunit 6B homolog; ankyri	96.34
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.34
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.25
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.22
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.21
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	96.21
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.2
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.2
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.2
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.19
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.17
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.17
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.13
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	96.06
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.06
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.05
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.05
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	96.04
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.03
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.02
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.01
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.99
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.98
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.96
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.96
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.94
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	95.94
3h1t_A	590	Type I site-specific restriction-modification syst	95.93
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.92
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	95.91
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	95.9
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.89
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.86
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.86
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.86
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.85
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.84
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.84
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.82
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	95.79
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	95.78
3bor_A	237	Human initiation factor 4A-II; translation initiat	95.77
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	95.77
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.74
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.74
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.74
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.73
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.68
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.67
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.67
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	95.67
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.66
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	95.66
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.65
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.63
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	95.63
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	95.62
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.61
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	95.58
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	95.57
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.56
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.55
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	95.54
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.54
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.53
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	95.52
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	95.5
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.5
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	95.49
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.48
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.48
1qzm_A	94	ATP-dependent protease LA; oligomerization domain,	95.45
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.43
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.42
2og2_A	359	Putative signal recognition particle receptor; nuc	95.41
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.41
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.4
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	95.39
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.36
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.34
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.33
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	95.32
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.31
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.28
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.28
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.27
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	95.25
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.25
1rif_A	282	DAR protein, DNA helicase UVSW; bacteriophage, REC	95.25
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.23
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.16
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.14
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	95.11
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	95.08
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	95.05
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.03
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	95.02
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.01
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	94.93
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.91
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.91
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	94.9
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	94.86
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	94.83
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.8
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	94.78
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	94.76
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	94.76
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	94.74
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.73
1wp9_A	494	ATP-dependent RNA helicase, putative; ATPase, DNA	94.71
3ice_A	422	Transcription termination factor RHO; transcriptio	94.67
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.67
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	94.63
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.58
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.54
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	94.5
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.46
2oca_A	510	DAR protein, ATP-dependent DNA helicase UVSW; ATP-	94.46
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.45
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	94.44
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.4
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.39
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.38
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.37
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	94.36
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	94.35
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.32
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.32
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.31
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.29
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.27
4a4z_A	997	Antiviral helicase SKI2; hydrolase, ATPase, mRNA d	94.24
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	94.2
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.2
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.19
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.14
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.12
1gm5_A	780	RECG; helicase, replication restart; HET: DNA ADP;	94.1
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	94.09
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.08
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	94.06
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.05
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.04
3dmq_A	968	RNA polymerase-associated protein RAPA; SWF2/SNF2,	94.03
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.03
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.02
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.98
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	93.97
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.94
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.93

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-40  Score=311.09  Aligned_cols=236  Identities=19%  Similarity=0.284  Sum_probs=199.5

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|++.+|++|++.   +.+|.++++.+...+..+|+++|||||||||||++|+++|++++.       +|+.+
T Consensus       144 ~v~~~dIgGl~~~k~~l~e~---v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-------~f~~v  213 (405)
T 4b4t_J          144 DSTYDMVGGLTKQIKEIKEV---IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-------KFIRV  213 (405)
T ss_dssp             SCCGGGSCSCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-------CceEE
Confidence            45799999999999999988   666777777777777889999999999999999999999999987       99999


Q ss_pred             ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      +++++.++|+|++++.++.+|..|   .+|||||||+|+++++|..++   +....+++++||..||+    ..|+||+|
T Consensus       214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaA  293 (405)
T 4b4t_J          214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMA  293 (405)
T ss_dssp             EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEE
T ss_pred             EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEec
Confidence            999999999999999999999887   469999999999999876433   33566889999999986    56888888


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      ||.....     ||||+|  ||+.+|+|+.|+.++|.+|++.++++.         .+..+++.+.++..+.        
T Consensus       294 TNrpd~L-----DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~l~~dvdl~~lA~~t~--------  351 (405)
T 4b4t_J          294 TNRLDIL-----DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM---------NLTRGINLRKVAEKMN--------  351 (405)
T ss_dssp             ESCSSSS-----CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------BCCSSCCHHHHHHHCC--------
T ss_pred             cCChhhC-----CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHCC--------
Confidence            8765553     999998  999999999999999999999998764         3445666666655554        


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                       ..+|+++.+++..|...+..+         +...|+.+||..|++++.+
T Consensus       352 -G~SGADi~~l~~eA~~~Air~---------~~~~vt~~Df~~Al~~v~~  391 (405)
T 4b4t_J          352 -GCSGADVKGVCTEAGMYALRE---------RRIHVTQEDFELAVGKVMN  391 (405)
T ss_dssp             -SCCHHHHHHHHHHHHHHHHHT---------TCSBCCHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhC
Confidence             455888899999888776433         3356999999999999876

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-39  Score=305.36  Aligned_cols=236  Identities=20%  Similarity=0.304  Sum_probs=197.7

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|++.+|++|++.   +..+..+++.+...+..+|+++|||||||||||++|+++|.+++.       +|+.+
T Consensus       178 ~v~~~DIgGld~~k~~L~e~---v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~-------~fi~v  247 (437)
T 4b4t_I          178 TESYSDIGGLESQIQEIKES---VELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA-------TFLRI  247 (437)
T ss_dssp             CCCGGGTCSCHHHHHHHHHH---HHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCcceecCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC-------CEEEE
Confidence            46899999999999999988   455566666666677788999999999999999999999999987       99999


Q ss_pred             ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      +++++.++|+|++++.++.+|..|   .+|||||||+|++.++|...+   +....+++++||..||+    +.++||+|
T Consensus       248 ~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaA  327 (437)
T 4b4t_I          248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA  327 (437)
T ss_dssp             ESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEE
T ss_pred             EHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEe
Confidence            999999999999999999999877   469999999999999885432   34566788999999874    56888888


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      ||.....     ||||+|  |||.+|+|+.|+.++|.+|++.++.+.         .+..+++.+.++..+.+       
T Consensus       328 TNrpd~L-----DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~---------~l~~dvdl~~LA~~T~G-------  386 (437)
T 4b4t_I          328 TNKIETL-----DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM---------NLSEDVNLETLVTTKDD-------  386 (437)
T ss_dssp             ESCSTTC-----CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS---------CBCSCCCHHHHHHHCCS-------
T ss_pred             CCChhhc-----CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC---------CCCCcCCHHHHHHhCCC-------
Confidence            8765543     999998  999999999999999999999999864         34566676666665554       


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                        .+|++|.+++..|...+..+         ....|+.+||.+|++++.|
T Consensus       387 --fSGADI~~l~~eA~~~Air~---------~~~~It~eDf~~Al~rv~~  425 (437)
T 4b4t_I          387 --LSGADIQAMCTEAGLLALRE---------RRMQVTAEDFKQAKERVMK  425 (437)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHT---------TCSCBCHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHhC
Confidence              45888899999888777433         2356999999999999876

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-38  Score=301.60  Aligned_cols=236  Identities=20%  Similarity=0.260  Sum_probs=196.8

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|++.+|++|++.   +..+..+++.+..++..+|+++|||||||||||++|+++|++++.       +|+.+
T Consensus       205 ~vt~~DIgGl~~~k~~L~e~---V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-------~fi~v  274 (467)
T 4b4t_H          205 DVTYSDVGGCKDQIEKLREV---VELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-------TFIRV  274 (467)
T ss_dssp             SCCCSSCTTCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCCHHHhccHHHHHHHHHHH---HHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-------CeEEE
Confidence            35799999999999999987   555666666666677789999999999999999999999999987       99999


Q ss_pred             ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      +++++.++|+|++++.++.+|..|   .+|||||||+|.++++|..+.   ......+++.||..||+    +.|+||+|
T Consensus       275 s~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaA  354 (467)
T 4b4t_H          275 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA  354 (467)
T ss_dssp             EGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEE
T ss_pred             EhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeC
Confidence            999999999999999999999887   469999999999999886443   23456788899999975    56888888


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      ||.....     ||||+|  ||+.+|+|+.|+.++|.+||+.++++.         .+..+++.+.++..+.+       
T Consensus       355 TNrpd~L-----DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~---------~l~~dvdl~~LA~~T~G-------  413 (467)
T 4b4t_H          355 TNRPNTL-----DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM---------SVERGIRWELISRLCPN-------  413 (467)
T ss_dssp             CSCTTSB-----CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS---------CBCSSCCHHHHHHHCCS-------
T ss_pred             CCCcccC-----ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC---------CCCCCCCHHHHHHHCCC-------
Confidence            7765543     999998  999999999999999999999999864         34456676666665554       


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                        .+|++|.+++..|...+..+         +...|+.+||.+|++++.+
T Consensus       414 --fSGADI~~l~~eAa~~Air~---------~~~~it~~Df~~Al~kV~~  452 (467)
T 4b4t_H          414 --STGAELRSVCTEAGMFAIRA---------RRKVATEKDFLKAVDKVIS  452 (467)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHhc
Confidence              45788899999888776433         2356999999999998864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-38  Score=302.47  Aligned_cols=237  Identities=21%  Similarity=0.270  Sum_probs=197.4

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|++.+++.|++.   +.+|..+++.+...+..+|+++|||||||||||++|+++|++++.       +|+.+
T Consensus       177 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-------~~~~v  246 (437)
T 4b4t_L          177 EITFDGIGGLTEQIRELREV---IELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-------NFIFS  246 (437)
T ss_dssp             SSCSGGGCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCChhHhCChHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEE
Confidence            45799999999999999988   555667777777677789999999999999999999999999987       99999


Q ss_pred             ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      +++++.++|+|++++.++.+|..|   .+|||||||+|.++++|.+++   +.....+++.||..||+    +.++||+|
T Consensus       247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~A  326 (437)
T 4b4t_L          247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMA  326 (437)
T ss_dssp             EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEE
T ss_pred             ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEe
Confidence            999999999999999999999887   469999999999999875432   34556788999999986    46888888


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      ||.....     ||||+|  ||+.+|+||.|+.++|.+|++.++.+.         .+..+++.+.++..+.        
T Consensus       327 TNrp~~L-----DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~~~~d~dl~~lA~~t~--------  384 (437)
T 4b4t_L          327 TNRPDTL-----DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV---------KKTGEFDFEAAVKMSD--------  384 (437)
T ss_dssp             ESSTTSS-----CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS---------CBCSCCCHHHHHHTCC--------
T ss_pred             cCCchhh-----CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHhCC--------
Confidence            7765543     999987  699999999999999999999999865         3345566666655544        


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHhc
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~~  436 (438)
                       ..+|++|.+++..|...+..+         +...|+.+||.+|++++.|.
T Consensus       385 -G~sGADi~~l~~eA~~~air~---------~~~~i~~~d~~~Al~~v~~~  425 (437)
T 4b4t_L          385 -GFNGADIRNCATEAGFFAIRD---------DRDHINPDDLMKAVRKVAEV  425 (437)
T ss_dssp             -SCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHHHT
T ss_pred             -CCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHHhc
Confidence             455888999999888776433         23469999999999999874

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-38  Score=304.57  Aligned_cols=237  Identities=21%  Similarity=0.269  Sum_probs=198.0

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|++.+|+.|++.   +..|..+++.+...+..+|+++|||||||||||++|+++|.+++.       +|+.+
T Consensus       177 ~~t~~digGl~~~k~~l~e~---v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-------~f~~v  246 (434)
T 4b4t_M          177 TETYSDVGGLDKQIEELVEA---IVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-------TFLKL  246 (434)
T ss_dssp             SCCGGGSCSCHHHHHHHHHH---THHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCChHhcCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-------CEEEE
Confidence            45799999999999999987   566677777777777788999999999999999999999999987       99999


Q ss_pred             ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      +++++.++|+|++++.++.+|..|   .+|||||||+|.++++|....   ......+++.||..||+    ..|+||+|
T Consensus       247 ~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaa  326 (434)
T 4b4t_M          247 AAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAA  326 (434)
T ss_dssp             EGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEE
T ss_pred             ehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence            999999999999999999999877   579999999999999886433   23456788999999986    46888888


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      ||.....     ||||+|  ||+.+|+|+.|+.++|.+|++.++++.         .+..+++.+.++..+.        
T Consensus       327 TNrp~~L-----D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~~~~dvdl~~lA~~t~--------  384 (434)
T 4b4t_M          327 TNRVDVL-----DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM---------TTDDDINWQELARSTD--------  384 (434)
T ss_dssp             CSSCCCC-----CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS---------CBCSCCCHHHHHHHCS--------
T ss_pred             CCCchhc-----CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC---------CCCCcCCHHHHHHhCC--------
Confidence            7765543     999988  999999999999999999999999864         3445666666665554        


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHhc
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~~  436 (438)
                       ..+|++|.+++..|...+..+         +...|+.+||.+|+++++|.
T Consensus       385 -G~sGADi~~l~~eA~~~a~r~---------~~~~i~~~Df~~Al~~v~~~  425 (434)
T 4b4t_M          385 -EFNGAQLKAVTVEAGMIALRN---------GQSSVKHEDFVEGISEVQAR  425 (434)
T ss_dssp             -SCCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHSCSSS
T ss_pred             -CCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhCC
Confidence             445888999999888776433         33579999999999988763

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-37  Score=294.61  Aligned_cols=235  Identities=20%  Similarity=0.279  Sum_probs=194.5

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|++.+|+.|++.   +..+..+++.+...+..+|+++|||||||||||++|+++|++++.       +|+.+
T Consensus       168 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-------~~~~v  237 (428)
T 4b4t_K          168 DVTYADVGGLDMQKQEIREA---VELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-------AFIRV  237 (428)
T ss_dssp             SCCGGGSCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-------EEEEE
T ss_pred             CCCHHHhccHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeEEE
Confidence            35799999999999999987   445556666666667788999999999999999999999999987       99999


Q ss_pred             ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEe
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA  307 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~  307 (438)
                      +++++.++|+|++++.++.+|..|   .+|||||||+|++++.|...   ++....+++++||..||+    ..++||+|
T Consensus       238 ~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~a  317 (428)
T 4b4t_K          238 NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMA  317 (428)
T ss_dssp             EGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEE
T ss_pred             ecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEe
Confidence            999999999999999999999887   46999999999999987533   344567899999999985    56888888


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCC-CCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFN-DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  384 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~-~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (438)
                      ||.....     ||||+|  ||+..|+|| .|+.++|..|++.++.+.         .+..+++.+.++..+.+      
T Consensus       318 TN~~~~L-----D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~---------~l~~~~dl~~lA~~t~G------  377 (428)
T 4b4t_K          318 TNRADTL-----DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM---------SLAPEADLDSLIIRNDS------  377 (428)
T ss_dssp             ESCSSSC-----CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS---------CBCTTCCHHHHHHHTTT------
T ss_pred             cCChhhc-----ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHHCCC------
Confidence            7765543     999988  999999997 799999999999999864         34456666666655554      


Q ss_pred             hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          385 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                         .+|+++.+++..|...+..+         +...|+.+||.+|++...
T Consensus       378 ---~sgadi~~l~~eA~~~a~r~---------~~~~i~~~d~~~A~~~~~  415 (428)
T 4b4t_K          378 ---LSGAVIAAIMQEAGLRAVRK---------NRYVILQSDLEEAYATQV  415 (428)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHS
T ss_pred             ---CCHHHHHHHHHHHHHHHHHC---------CCCCCCHHHHHHHHHHhh
Confidence               45788899999988777543         235699999999998753

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=5.8e-36  Score=307.29  Aligned_cols=244  Identities=17%  Similarity=0.253  Sum_probs=167.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++++|+.|++.   +.++.++++.+...+..+++++|||||||||||++|+++|.+++.       +|+.++
T Consensus       474 v~w~diggl~~~k~~l~e~---v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~  543 (806)
T 3cf2_A          474 VTWEDIGGLEDVKRELQEL---VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK  543 (806)
T ss_dssp             CCSTTCCSCHHHHHHHTTT---TTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECC
T ss_pred             CCHHHhCCHHHHHHHHHHH---HHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEec
Confidence            3588999999999999987   566677888888888889999999999999999999999998876       999999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      .++++++|+|++++.++.+|+.|+   +|||||||+|++.+.|+..   ++....+++++||.+||+    ..|+||+||
T Consensus       544 ~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aT  623 (806)
T 3cf2_A          544 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT  623 (806)
T ss_dssp             HHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-
T ss_pred             cchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeC
Confidence            999999999999999999999884   6999999999999988632   345667899999999986    568888887


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      |.....     |||++|  ||+.+|+|+.|+.++|.+|++.++++.         .+..+++.+.++..+.+++      
T Consensus       624 N~p~~l-----D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~---------~~~~~~dl~~la~~t~g~S------  683 (806)
T 3cf2_A          624 NRPDII-----DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---------PVAKDVDLEFLAKMTNGFS------  683 (806)
T ss_dssp             CCSSSS-----CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-----------CCC--------------------
T ss_pred             CCchhC-----CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC---------CCCCCCCHHHHHHhCCCCC------
Confidence            765543     999999  999999999999999999999988764         3445667777777777665      


Q ss_pred             cccccchHHHHHHHHHHhhccccCCC----------------CChhhhhhccHHHHHHHHHHHHh
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDC----------------LDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~----------------~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                         |+++.+++..|...+..+.....                ...+....|+.+||.+|++.++|
T Consensus       684 ---Gadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p  745 (806)
T 3cf2_A          684 ---GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR  745 (806)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-----
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCC
Confidence               77788888888777765532111                11122357999999999999987

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=100.00  E-value=2.5e-34  Score=295.25  Aligned_cols=245  Identities=20%  Similarity=0.292  Sum_probs=205.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.++++|++.   +..+.++++.+..++..+|+++|||||||||||++||++|++++.       +++.++
T Consensus       201 v~~~dIgGl~~~~~~l~e~---v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-------~~~~v~  270 (806)
T 3cf2_A          201 VGYDDIGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLIN  270 (806)
T ss_dssp             CCGGGCCSCCTTHHHHHHH---HHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-------EEEEEE
T ss_pred             CChhhhcCHHHHHHHHHHH---HHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------eEEEEE
Confidence            4699999999999999987   566788899999999999999999999999999999999998876       899999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCCh
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE  311 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~  311 (438)
                      ++++.++|+|++++.++.+|+.|+   ++||||||+|.+++++++.+++...+++++|+..|++    +.|+||++|+..
T Consensus       271 ~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~  350 (806)
T 3cf2_A          271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP  350 (806)
T ss_dssp             HHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSST
T ss_pred             hHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCCh
Confidence            999999999999999999999985   5999999999999999877778888999999999975    568888887765


Q ss_pred             hHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706          312 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  389 (438)
Q Consensus       312 ~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  389 (438)
                      ...     ||+|+|  ||+..|+++.|+.++|.+|++.++.+.         .+..+++.+.++..+.+         ..
T Consensus       351 d~L-----D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~---------~~~~dvdl~~lA~~T~G---------fs  407 (806)
T 3cf2_A          351 NSI-----DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLADDVDLEQVANETHG---------HV  407 (806)
T ss_dssp             TTS-----CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS---------EECTTCCHHHHHHHCCS---------CC
T ss_pred             hhc-----CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHhcCC---------CC
Confidence            442     999999  999999999999999999999988764         34456666665555554         45


Q ss_pred             ccchHHHHHHHHHHhhcccc------CCCCChh--hhhhccHHHHHHHHHHHHhc
Q 013706          390 GGLVDPMLVNARENLDLRLS------FDCLDTD--ELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       390 ~~~l~~~~~~a~~~~~~r~~------~~~~~~~--~~~~i~~~d~~~a~~~~~~~  436 (438)
                      +++|.+++.+|...+..|..      ......+  +...|+.+||..|++.++|-
T Consensus       408 gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps  462 (806)
T 3cf2_A          408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS  462 (806)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCc
Confidence            78888999888877766642      1111222  23568999999999988774

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.98  E-value=9.3e-32  Score=253.19  Aligned_cols=245  Identities=17%  Similarity=0.202  Sum_probs=195.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.|++.   +..+.+++..+... ..++.++|||||||||||++|+++|+++.      ..+|+.++
T Consensus         9 ~~~~di~G~~~~k~~l~~~---v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~------~~~~~~i~   78 (322)
T 1xwi_A            9 VKWSDVAGLEGAKEALKEA---VILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSIS   78 (322)
T ss_dssp             CCGGGSCSCHHHHHHHHHH---HHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTT------SCEEEEEE
T ss_pred             CCHHHhcCHHHHHHHHHHH---HHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcC------CCcEEEEE
Confidence            4689999999999999987   44566777666532 34678999999999999999999999872      23889999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS  310 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~  310 (438)
                      ++++.+.|+|++++.++.+|..+   .++||||||+|.+.++++....+...++++.|+..|++     ..++||++|+.
T Consensus        79 ~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~  158 (322)
T 1xwi_A           79 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI  158 (322)
T ss_dssp             CCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred             hHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence            99999999999999999999875   46899999999999988877777788999999999974     56888888765


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      ...     .+|++++||+..+.++.|+.+++.+|++.++.+..           ..+++..+..++....      ..++
T Consensus       159 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la~~t~------G~sg  216 (322)
T 1xwi_A          159 PWV-----LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-----------NSLTEADFRELGRKTD------GYSG  216 (322)
T ss_dssp             TTT-----SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-----------BCCCHHHHHHHHHTCT------TCCH
T ss_pred             ccc-----CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence            533     28999999999999999999999999999987642           2235567777776553      5678


Q ss_pred             cchHHHHHHHHHHhhccccCC--------------------------------------CCChhh--hhhccHHHHHHHH
Q 013706          391 GLVDPMLVNARENLDLRLSFD--------------------------------------CLDTDE--LRTITLEDLEAGL  430 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~~~~--------------------------------------~~~~~~--~~~i~~~d~~~a~  430 (438)
                      +++.+++..|...+..+....                                      ....+.  ...|+.+||.+|+
T Consensus       217 adl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al  296 (322)
T 1xwi_A          217 ADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSL  296 (322)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHH
Confidence            999999998887766553210                                      001111  2379999999999


Q ss_pred             HHHHh
Q 013706          431 KLLLR  435 (438)
Q Consensus       431 ~~~~~  435 (438)
                      +.++|
T Consensus       297 ~~~~p  301 (322)
T 1xwi_A          297 SNTKP  301 (322)
T ss_dssp             HTCCC
T ss_pred             HhCCC
Confidence            98877

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.98  E-value=2.7e-31  Score=249.84  Aligned_cols=262  Identities=37%  Similarity=0.558  Sum_probs=210.8

Q ss_pred             HHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706          154 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  232 (438)
Q Consensus       154 ~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~  232 (438)
                      ..+....++ +++|++.+++++.+++.....+..+...+.... .++.++||+||||||||++|+++|+.+...+.....
T Consensus        22 ~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~  100 (309)
T 3syl_A           22 AKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKG  100 (309)
T ss_dssp             HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSC
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCC
Confidence            344555666 799999999999999887776666666665443 456789999999999999999999999888877788


Q ss_pred             CEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCC
Q 013706          233 RVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYS  310 (438)
Q Consensus       233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~  310 (438)
                      +++.++++++.+.++|+....+...|+.+.++||||||+|.+.+.++.  +.....+++.|+..|++  ..+++|+++++
T Consensus       101 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~  178 (309)
T 3syl_A          101 HLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENNRDDLVVILAGYA  178 (309)
T ss_dssp             CEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred             cEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence            999999999999999999999999999999999999999999876542  23345788899999986  46888999888


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhh-Hhhhcccc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRREMN  389 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~n  389 (438)
                      ..++.+...+|+|++||+.++.|++|+.+++.+|++.++.+..           ..++++++..+...... .....+||
T Consensus       179 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~gn  247 (309)
T 3syl_A          179 DRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN-----------YQMTPEAETALRAYIGLRRNQPHFAN  247 (309)
T ss_dssp             HHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHHHHHHHTTSSSCCH
T ss_pred             HHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHHhccCCCCCc
Confidence            7777666679999999999999999999999999999998642           33566777777665210 01123899


Q ss_pred             ccchHHHHHHHHHHhhccccC---CCCChhhhhhccHHHHHHH
Q 013706          390 GGLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEAG  429 (438)
Q Consensus       390 ~~~l~~~~~~a~~~~~~r~~~---~~~~~~~~~~i~~~d~~~a  429 (438)
                      +|.++++++++...+..|+..   +....++..+++.+||..+
T Consensus       248 ~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~~~d~~~~  290 (309)
T 3syl_A          248 ARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRAS  290 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEECHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhccHHHhccc
Confidence            999999999999998888754   3445677788999998753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.97  E-value=1.2e-31  Score=253.13  Aligned_cols=245  Identities=16%  Similarity=0.193  Sum_probs=190.3

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.+++.   +..+..++..+.. ...++.++||+||||||||++|+++|++++.       +++.++
T Consensus        15 ~~~~di~G~~~~~~~l~~~---i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~v~   83 (322)
T 3eie_A           15 VKWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS   83 (322)
T ss_dssp             CCGGGSCSCHHHHHHHHHH---THHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred             CCHHHhcChHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-------CEEEEc
Confidence            3689999999999999987   4456666666554 3456789999999999999999999998865       899999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS  310 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~  310 (438)
                      ++++.+.|+|+++..++.+|..+.   ++||||||+|.+.+.++...++...++++.|+..|++     ..++||++|+.
T Consensus        84 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~  163 (322)
T 3eie_A           84 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI  163 (322)
T ss_dssp             HHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred             hHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence            999999999999999999998764   4899999999999987655566667888999988863     56888888765


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      ...     .+|++++||+..+.++.|+.+++.+|++.++.+..           ..++++.+..++....      ..++
T Consensus       164 ~~~-----ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~l~~la~~t~------g~sg  221 (322)
T 3eie_A          164 PWQ-----LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------CVLTKEDYRTLGAMTE------GYSG  221 (322)
T ss_dssp             GGG-----SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC-----------CCCCHHHHHHHHHTTT------TCCH
T ss_pred             hhh-----CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence            443     28999999999999999999999999999987642           2345667777776554      5678


Q ss_pred             cchHHHHHHHHHHhhccccCC----C----------------------------C--ChhhhhhccHHHHHHHHHHHHhc
Q 013706          391 GLVDPMLVNARENLDLRLSFD----C----------------------------L--DTDELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~~~~----~----------------------------~--~~~~~~~i~~~d~~~a~~~~~~~  436 (438)
                      +++.+++..|...+..|....    .                            .  +......|+.+||.+|++.++|.
T Consensus       222 ~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps  301 (322)
T 3eie_A          222 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT  301 (322)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCC
Confidence            999999988876665543210    0                            0  00112569999999999998873

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.97  E-value=6.7e-31  Score=250.73  Aligned_cols=245  Identities=16%  Similarity=0.211  Sum_probs=188.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.|.+.   +..+..++..+.. ...++.++||+||||||||++|+++|+++..       +++.++
T Consensus        48 ~~~~di~G~~~~~~~l~~~---v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~v~  116 (355)
T 2qp9_X           48 VKWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS  116 (355)
T ss_dssp             CCGGGSCCGGGHHHHHHHH---THHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred             CCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEee
Confidence            4699999999999999987   4455566655544 3456789999999999999999999999865       899999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS  310 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~  310 (438)
                      ++++.+.|+|+.+..++.+|..+   .++||||||+|.+.+.+....+....+++++|+..|++     ..++||++|+.
T Consensus       117 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~  196 (355)
T 2qp9_X          117 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI  196 (355)
T ss_dssp             HHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred             HHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence            99999999999999999999877   57999999999999887666667778889999999873     56888888766


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      ...     .+|++++||+..+.++.|+.+++.+|++.++....           ..+++..+..++....      ..++
T Consensus       197 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~~~~~~l~~la~~t~------G~sg  254 (355)
T 2qp9_X          197 PWQ-----LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------SVLTKEDYRTLGAMTE------GYSG  254 (355)
T ss_dssp             GGG-----SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------BCCCHHHHHHHHHHTT------TCCH
T ss_pred             ccc-----CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence            543     28999999999999999999999999999987642           1235567777776653      5678


Q ss_pred             cchHHHHHHHHHHhhccccCCC--------------------------------CChh--hhhhccHHHHHHHHHHHHhc
Q 013706          391 GLVDPMLVNARENLDLRLSFDC--------------------------------LDTD--ELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~~~~~--------------------------------~~~~--~~~~i~~~d~~~a~~~~~~~  436 (438)
                      +++.+++.+|...+..|.....                                ...+  ....|+.+||..|++.++|-
T Consensus       255 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps  334 (355)
T 2qp9_X          255 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT  334 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCC
Confidence            9999999999888776532100                                0001  12469999999999998873

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.97  E-value=5.7e-31  Score=245.96  Aligned_cols=244  Identities=17%  Similarity=0.266  Sum_probs=184.8

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.+++.+..   +..+++.+...+..++.++||+||||||||++|+++|+++..       +++.++
T Consensus        12 ~~~~di~G~~~~~~~l~~~v~~---~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-------~~i~v~   81 (301)
T 3cf0_A           12 VTWEDIGGLEDVKRELQELVQY---PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK   81 (301)
T ss_dssp             CCGGGSCSCHHHHHHHHHHHHH---HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------EEEEEC
T ss_pred             CCHHHhCCHHHHHHHHHHHHHH---HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-------CEEEEE
Confidence            4689999999999999988553   334444433344567889999999999999999999998754       899999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      ++++.++|+|++++.++.+|..+.   ++||||||+|.+.+.++..   ......++++.|+..|++    .+++||++|
T Consensus        82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at  161 (301)
T 3cf0_A           82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT  161 (301)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred             hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence            999999999999999999998874   5899999999998765432   122334677888888874    568888888


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +.....     +|++++  ||+..++|+.|+.+++.+|++.++.+..         +..+++.+.++..+.         
T Consensus       162 n~~~~l-----d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~---------~~~~~~~~~la~~~~---------  218 (301)
T 3cf0_A          162 NRPDII-----DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTN---------  218 (301)
T ss_dssp             SCGGGS-----CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCSSCCHHHHHHTCS---------
T ss_pred             CCcccc-----ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC---------CCccchHHHHHHHcC---------
Confidence            765432     899988  9999999999999999999999997642         234455555555433         


Q ss_pred             cccccchHHHHHHHHHHhhccccCCC-------------CC---hhhhhhccHHHHHHHHHHHHh
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDC-------------LD---TDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~-------------~~---~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      ..++++|++++++|...+..+.....             .+   ......|+.+||.+|++.++|
T Consensus       219 g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~  283 (301)
T 3cf0_A          219 GFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR  283 (301)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCC
Confidence            34467999999999887765532100             00   112357999999999988765

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.96  E-value=7.3e-30  Score=250.56  Aligned_cols=245  Identities=17%  Similarity=0.195  Sum_probs=184.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.|.+.   +..+..++..+.. ...++.++||+||||||||++|+++|+++.      ..+|+.++
T Consensus       131 ~~~~di~G~~~~k~~l~~~---v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~------~~~~~~v~  200 (444)
T 2zan_A          131 VKWSDVAGLEGAKEALKEA---VILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSIS  200 (444)
T ss_dssp             CCGGGSCSCHHHHHHHHHH---HTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCC------SSEEEEEC
T ss_pred             CCHHHhcCHHHHHHHHHHH---HHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcC------CCCEEEEe
Confidence            4689999999999999987   4455555555442 134678999999999999999999999871      23899999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS  310 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~  310 (438)
                      ++++.+.|+|+++..++.+|..+   .++||||||+|.+.+.++....+...++++.|+..|++     ..++||++|+.
T Consensus       201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~  280 (444)
T 2zan_A          201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI  280 (444)
T ss_dssp             CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence            99999999999999999988765   46999999999999888766677778899999999975     46888888766


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      ...     .+|++++||+..+.++.|+.+++.+|++.++.+..           ..+++..+..++....      ..++
T Consensus       281 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la~~t~------G~sg  338 (444)
T 2zan_A          281 PWV-----LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ-----------NSLTEADFQELGRKTD------GYSG  338 (444)
T ss_dssp             GGG-----SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------EECCHHHHHHHHHHTT------TCCH
T ss_pred             ccc-----cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence            543     28999999999999999999999999999987642           1235566777776553      5578


Q ss_pred             cchHHHHHHHHHHhhccccCC--------------------------------------CCChh--hhhhccHHHHHHHH
Q 013706          391 GLVDPMLVNARENLDLRLSFD--------------------------------------CLDTD--ELRTITLEDLEAGL  430 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~~~~--------------------------------------~~~~~--~~~~i~~~d~~~a~  430 (438)
                      +++.+++..|...+..++...                                      ....+  ....|+.+||.+|+
T Consensus       339 adl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~  418 (444)
T 2zan_A          339 ADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSL  418 (444)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHH
Confidence            999999998887766553210                                      00011  12479999999999


Q ss_pred             HHHHh
Q 013706          431 KLLLR  435 (438)
Q Consensus       431 ~~~~~  435 (438)
                      +.++|
T Consensus       419 ~~~~p  423 (444)
T 2zan_A          419 SSTKP  423 (444)
T ss_dssp             HTCCC
T ss_pred             HhCCC
Confidence            98887

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.96  E-value=2.6e-30  Score=237.41  Aligned_cols=250  Identities=18%  Similarity=0.239  Sum_probs=176.3

Q ss_pred             HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ...|++++|+++++++|++.   +..+..++.....++...+++++|+||||||||++++++|.++..       .++.+
T Consensus         6 ~~~~~di~g~~~~~~~l~~~---i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-------~~i~i   75 (274)
T 2x8a_A            6 NVTWADIGALEDIREELTMA---ILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-------NFISV   75 (274)
T ss_dssp             ------CCHHHHHHHHHHHH---HTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEE
T ss_pred             CCCHHHhCCHHHHHHHHHHH---HHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-------CEEEE
Confidence            46799999999999999886   344444444444455567788999999999999999999997654       68899


Q ss_pred             ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC----CEEEEEecCC
Q 013706          238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----KVVVIFAGYS  310 (438)
Q Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----~v~vi~~~~~  310 (438)
                      ++.++.+.++|+.++.++.+|..+   .++++|+||+|.+.+.+.........+++++++..|+++    .++++++++.
T Consensus        76 ~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~  155 (274)
T 2x8a_A           76 KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR  155 (274)
T ss_dssp             ETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred             EcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence            999999999999999999999876   468999999999987654322222346678899888763    4566666665


Q ss_pred             hhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706          311 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  388 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (438)
                      ....     ||+++|  ||+..|+++.|+.++|.+|++.+++...      ...+..+++.+.++..+.       ....
T Consensus       156 p~~L-----D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~------~~~~~~~~~~~~la~~~~-------~~g~  217 (274)
T 2x8a_A          156 PDII-----DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT------KPPLDADVNLEAIAGDLR-------CDCY  217 (274)
T ss_dssp             GGGS-----CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB------TTBBCTTCCHHHHHTCSG-------GGSC
T ss_pred             hhhC-----CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc------CCCCccccCHHHHHHhhc-------cCCc
Confidence            5543     999998  9999999999999999999999886532      123344555555444322       0145


Q ss_pred             cccchHHHHHHHHHHhhccccCCC--CChhhhhhccHHHHHHHHHHHHh
Q 013706          389 NGGLVDPMLVNARENLDLRLSFDC--LDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       389 n~~~l~~~~~~a~~~~~~r~~~~~--~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      .++++.+++++|...+..+.....  ....+...|+.+||.+|++.++|
T Consensus       218 sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p  266 (274)
T 2x8a_A          218 TGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS  266 (274)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence            588889999999887766643211  11223347999999999999877

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.96  E-value=3.5e-29  Score=246.86  Aligned_cols=244  Identities=19%  Similarity=0.268  Sum_probs=191.9

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|.+..++++++.+..   +..++..+...+..++.++||+||||||||++|+++|+.++.       +|+.+++
T Consensus       202 ~~~~i~G~~~~~~~l~~~i~~---~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~vn~  271 (489)
T 3hu3_A          202 GYDDIGGCRKQLAQIKEMVEL---PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLING  271 (489)
T ss_dssp             CGGGCCSCHHHHHHHHHHTHH---HHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-------EEEEEEH
T ss_pred             CHHHcCCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-------CEEEEEc
Confidence            578999999999999987543   334444444445667889999999999999999999997744       8999999


Q ss_pred             ccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCChh
Q 013706          240 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEP  312 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~~  312 (438)
                      +++.+.++|+.+..++.+|..+.   ++||||||||.+.++++....+...++++.|+..|++    .+++||++|+...
T Consensus       272 ~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~  351 (489)
T 3hu3_A          272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN  351 (489)
T ss_dssp             HHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred             hHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence            99999999999999999998874   4699999999999988877778888999999999984    5688888877654


Q ss_pred             HHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          313 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       313 ~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      .     .+|++++  ||+..|.|+.|+.+++.+|++.++....         +..+.+.+.+...+.         ..++
T Consensus       352 ~-----Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~---------l~~~~~l~~la~~t~---------g~s~  408 (489)
T 3hu3_A          352 S-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADDVDLEQVANETH---------GHVG  408 (489)
T ss_dssp             G-----BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC---------BCTTCCHHHHHHTCT---------TCCH
T ss_pred             c-----cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC---------CcchhhHHHHHHHcc---------CCcH
Confidence            3     2899988  9999999999999999999999887642         223333333333322         4457


Q ss_pred             cchHHHHHHHHHHhhccccCC------CCCh--hhhhhccHHHHHHHHHHHHhc
Q 013706          391 GLVDPMLVNARENLDLRLSFD------CLDT--DELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~~~~------~~~~--~~~~~i~~~d~~~a~~~~~~~  436 (438)
                      +++.+++.+|...+..|....      ....  .....|+.+||..|++.++|-
T Consensus       409 ~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps  462 (489)
T 3hu3_A          409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS  462 (489)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence            889999999988877664321      1111  123469999999999999874

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.96  E-value=2.5e-28  Score=238.71  Aligned_cols=233  Identities=22%  Similarity=0.305  Sum_probs=180.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|.+.+++++++++..+..+.....    ++...|+++||+||||||||++|+++|.+++.       +|+.++
T Consensus        13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~----~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-------~f~~is   81 (476)
T 2ce7_A           13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNR----IGARMPKGILLVGPPGTGKTLLARAVAGEANV-------PFFHIS   81 (476)
T ss_dssp             CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHT----TTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-------CEEEEE
T ss_pred             CCHHHhCCcHHHHHHHHHHHHHhhChHHHhh----cCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeeeCC
Confidence            4689999999999999998776544443333    34456789999999999999999999998865       899999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      ++++...++|..+..++.+|..+.   ++||||||+|.+.++++..   .+....+++++|+..|++    ..++||++|
T Consensus        82 ~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT  161 (476)
T 2ce7_A           82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT  161 (476)
T ss_dssp             GGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence            999999999999999999998874   5899999999999887632   344556788999999873    568888888


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +.....     +|++++  ||+..|.|+.|+.++|.+|++.++.+.         .+..+++.+.   +.. .|      
T Consensus       162 n~~~~L-----d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~---------~l~~~v~l~~---la~-~t------  217 (476)
T 2ce7_A          162 NRPDIL-----DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK---------PLAEDVNLEI---IAK-RT------  217 (476)
T ss_dssp             SCGGGS-----CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHH---HHH-TC------
T ss_pred             CChhhh-----chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC---------CCcchhhHHH---HHH-hc------
Confidence            765432     889887  999999999999999999999988764         2334444333   333 33      


Q ss_pred             ccc-ccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          387 EMN-GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       387 ~~n-~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      +|+ +|+|.+++++|...+..+         +...|+.+||.+|++.+.+
T Consensus       218 ~G~sgadL~~lv~~Aal~A~~~---------~~~~I~~~dl~~al~~v~~  258 (476)
T 2ce7_A          218 PGFVGADLENLVNEAALLAARE---------GRDKITMKDFEEAIDRVIA  258 (476)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHC-
T ss_pred             CCCcHHHHHHHHHHHHHHHHHc---------CCCeecHHHHHHHHHHHhc
Confidence            454 489999999998776322         2356999999999988753

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.96  E-value=3.6e-28  Score=232.31  Aligned_cols=244  Identities=17%  Similarity=0.253  Sum_probs=186.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.+.+.+.   .+..++..+... ..++.++||+||||||||++|+++|+.+..       +++.++
T Consensus        81 ~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~i~  149 (357)
T 3d8b_A           81 VNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGA-------TFFSIS  149 (357)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTC-------EEEEEE
T ss_pred             CCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCC-------eEEEEe
Confidence            468999999999999998743   344444444333 246789999999999999999999998754       899999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCEEEEEecC
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGY  309 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v~vi~~~~  309 (438)
                      ++++.+.++|+.+..++.+|..+   .++||||||+|.+.+.++...+....++++.|+..+++      ..++||++|+
T Consensus       150 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn  229 (357)
T 3d8b_A          150 ASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN  229 (357)
T ss_dssp             GGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred             hHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence            99999999999998888888765   46999999999999887665566777888999999874      4688888876


Q ss_pred             ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706          310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN  389 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  389 (438)
                      ....     .++++++||+..+.++.|+.+++.+|+..++....           ..++++++..+.....      ...
T Consensus       230 ~~~~-----l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~l~~la~~t~------G~s  287 (357)
T 3d8b_A          230 RPQE-----IDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-----------CCLSEEEIEQIVQQSD------AFS  287 (357)
T ss_dssp             CGGG-----BCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-----------BCCCHHHHHHHHHHTT------TCC
T ss_pred             Chhh-----CCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-----------CCccHHHHHHHHHHcC------CCC
Confidence            6432     28999999999999999999999999999887642           2245677777777653      456


Q ss_pred             ccchHHHHHHHHHHhhccccC---CCCChhhhhhccHHHHHHHHHHHHh
Q 013706          390 GGLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       390 ~~~l~~~~~~a~~~~~~r~~~---~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      +++++.++..|...+..++..   ......+...|+.+||..|++.++|
T Consensus       288 ~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p  336 (357)
T 3d8b_A          288 GADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP  336 (357)
T ss_dssp             HHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence            789999999887665544321   1122334568999999999999987

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.96  E-value=5.4e-28  Score=220.99  Aligned_cols=232  Identities=20%  Similarity=0.296  Sum_probs=178.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++++.+.+..+.    .+..+...+...+.+++|+||||||||++|+++|+.+..       +++.++
T Consensus         9 ~~~~~i~G~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~i~   77 (257)
T 1lv7_A            9 TTFADVAGCDEAKEEVAELVEYLR----EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFTIS   77 (257)
T ss_dssp             CCGGGSCSCHHHHHHTHHHHHHHH----CGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEC
T ss_pred             CCHHHhcCcHHHHHHHHHHHHHHh----CHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------CEEEEe
Confidence            368999999999999998766543    233333444556789999999999999999999998754       789999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      ++++...++|+..+.++.+|..+.   ++++||||+|.+.+.++..   ..+...+.++.++..+++    ..++||++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t  157 (257)
T 1lv7_A           78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT  157 (257)
T ss_dssp             SCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEE
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEee
Confidence            999999999999999999998874   3799999999999877632   233445778888888874    567888887


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +....     .+|++++  ||+..+.++.|+.+++.+|++.++.+.         .+.++....    .+.+.|      
T Consensus       158 n~~~~-----l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~---------~l~~~~~~~----~la~~~------  213 (257)
T 1lv7_A          158 NRPDV-----LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAA----IIARGT------  213 (257)
T ss_dssp             SCTTT-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHH----HHHHTC------
T ss_pred             CCchh-----CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC---------CCCccccHH----HHHHHc------
Confidence            66532     2889888  999999999999999999999988753         233333322    233344      


Q ss_pred             cc-cccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          387 EM-NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       387 ~~-n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      +| |+|++.+++++|...+..+         +...|+.+||.+|++.+.
T Consensus       214 ~G~~~~dl~~l~~~a~~~a~~~---------~~~~i~~~~~~~a~~~~~  253 (257)
T 1lv7_A          214 PGFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIM  253 (257)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh---------CCCcccHHHHHHHHHHHh
Confidence            66 9999999999998876432         235799999999999875

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.95  E-value=1.8e-28  Score=224.84  Aligned_cols=234  Identities=18%  Similarity=0.281  Sum_probs=162.9

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++.+++++++++..+..+    ..+...+...+.++||+||||||||++|+++|+.+..       +++.+++
T Consensus         4 ~~~~i~G~~~~~~~l~~~~~~~~~~----~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~~~~   72 (262)
T 2qz4_A            4 SFKDVAGMHEAKLEVREFVDYLKSP----ERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-------PFLAMAG   72 (262)
T ss_dssp             CTTSSCSCHHHHHHHHHHHHHHHCC----C------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred             CHHHhCCHHHHHHHHHHHHHHHHCH----HHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEech
Confidence            5889999999999999987654332    2333344567889999999999999999999998865       8999999


Q ss_pred             ccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC----chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          240 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      +++...+.|.+...++.+|..+.   ++||||||+|.+..++....    +......++.|+..+++    ..+++|+++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~t  152 (262)
T 2qz4_A           73 AEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAST  152 (262)
T ss_dssp             TTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred             HHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecC
Confidence            99998899988888989998775   79999999999987664321    22334667888887765    467888887


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHH-HHHHHHHHHhhHhhh
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD-AIAALIEKETTEKQR  385 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  385 (438)
                      +....     .++++++  ||+..+.|+.|+.+++.+|++.++.+..       ...    +.+ .+..+....      
T Consensus       153 n~~~~-----ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-------~~~----~~~~~~~~l~~~~------  210 (262)
T 2qz4_A          153 NRADI-----LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-------LTQ----SSTFYSQRLAELT------  210 (262)
T ss_dssp             SCGGG-----GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-------CCB----THHHHHHHHHHTC------
T ss_pred             CChhh-----cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-------CCc----chhhHHHHHHHHC------
Confidence            65443     2789998  9999999999999999999999998642       121    222 123333322      


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      ...+++++.++++.|...+..         .+...|+.+||.+|++.+.+
T Consensus       211 ~g~~~~~l~~l~~~a~~~a~~---------~~~~~i~~~d~~~a~~~~~~  251 (262)
T 2qz4_A          211 PGFSGADIANICNEAALHAAR---------EGHTSVHTLNFEYAVERVLA  251 (262)
T ss_dssp             TTCCHHHHHHHHHHHHTC-----------------CCBCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHhcc
Confidence            134568899998888766522         23457999999999998875

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.95  E-value=7.7e-28  Score=233.04  Aligned_cols=243  Identities=22%  Similarity=0.269  Sum_probs=177.5

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++.+++.+.+++   ..+..++..+.... .++.++||+||||||||++|+++|+.++.       +|+.+++
T Consensus       113 ~~~~iiG~~~~~~~l~~~~---~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~-------~~~~v~~  181 (389)
T 3vfd_A          113 KFDDIAGQDLAKQALQEIV---ILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNA-------TFFNISA  181 (389)
T ss_dssp             CGGGSCSCHHHHHHHHHHT---HHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEECS
T ss_pred             ChHHhCCHHHHHHHHHHHH---HHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcC-------cEEEeeH
Confidence            5899999999999999874   34444444444333 35789999999999999999999998755       8999999


Q ss_pred             ccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCEEEEEecCC
Q 013706          240 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYS  310 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v~vi~~~~~  310 (438)
                      +++.+.|+|+.+..+..+|..+.   ++||||||||.+...++........++++.|+..+++      ..++||++|+.
T Consensus       182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~  261 (389)
T 3vfd_A          182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR  261 (389)
T ss_dssp             CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred             HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence            99999999999999999888764   4999999999999877665566677888899988873      45888888765


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      ...     .++++++||+..+.|+.|+.+++.+|++.++....           ..++.+.+..+.....      ..++
T Consensus       262 ~~~-----l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~~~~la~~~~------g~~~  319 (389)
T 3vfd_A          262 PQE-----LDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-----------SPLTQKELAQLARMTD------GYSG  319 (389)
T ss_dssp             GGG-----CCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------CCSCHHHHHHHHHHTT------TCCH
T ss_pred             chh-----cCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence            432     28999999999999999999999999999887642           2345667777776653      5567


Q ss_pred             cchHHHHHHHHHHhhccccCC---CCChhhhhhccHHHHHHHHHHHHh
Q 013706          391 GLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      +++..++..|...+..++...   .....+...|+.+||..+++.+.|
T Consensus       320 ~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~  367 (389)
T 3vfd_A          320 SDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR  367 (389)
T ss_dssp             HHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence            889999888877766554321   122234467999999999987654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=7.8e-28  Score=223.48  Aligned_cols=235  Identities=21%  Similarity=0.301  Sum_probs=179.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++++.+.+..   +...+..+...+...+.++||+||||||||++|+++|+.+..       +++.++
T Consensus        14 ~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-------~~~~v~   83 (285)
T 3h4m_A           14 VRYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-------TFIRVV   83 (285)
T ss_dssp             CCGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-------EEEEEE
T ss_pred             CCHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEe
Confidence            3689999999999999987543   223333333334457789999999999999999999998755       899999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      ++++.+.+.|+....+...|..+   .++||||||+|.+.+++++..   .......+..++..+++    ..+++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt  163 (285)
T 3h4m_A           84 GSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT  163 (285)
T ss_dssp             GGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred             hHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence            99999999999999888888766   457999999999998776442   33445667777777653    568888887


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +....     .+|++++  ||+..+.|+.|+.+++.+|++.++....         +..+.+.+.+...+.         
T Consensus       164 n~~~~-----l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~l~~~~~---------  220 (285)
T 3h4m_A          164 NRPDI-----LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN---------LAEDVNLEEIAKMTE---------  220 (285)
T ss_dssp             SCGGG-----BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHHCT---------
T ss_pred             CCchh-----cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC---------CCCcCCHHHHHHHcC---------
Confidence            65433     2888888  9999999999999999999999887642         233444444444443         


Q ss_pred             cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      ..+++++++++..|...+..+         ....|+.+||.+|++.+.+
T Consensus       221 g~~~~~i~~l~~~a~~~a~~~---------~~~~I~~~d~~~al~~~~~  260 (285)
T 3h4m_A          221 GCVGAELKAICTEAGMNAIRE---------LRDYVTMDDFRKAVEKIME  260 (285)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHh---------ccCcCCHHHHHHHHHHHHh
Confidence            345788999999998877443         2346999999999998864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.95  E-value=4.6e-28  Score=226.41  Aligned_cols=244  Identities=23%  Similarity=0.311  Sum_probs=182.3

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.+.+.+   ..+..++..+.... .++.++||+||||||||++|+++|+.+..       +++.++
T Consensus        18 ~~~~~i~G~~~~~~~l~~~i---~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~-------~~~~i~   86 (297)
T 3b9p_A           18 VEWTDIAGQDVAKQALQEMV---ILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSA-------TFLNIS   86 (297)
T ss_dssp             CCGGGSCCCHHHHHHHHHHT---HHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTC-------EEEEEE
T ss_pred             CCHHHhCChHHHHHHHHHHH---HhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEee
Confidence            46899999999999998873   44445555544333 35789999999999999999999998754       899999


Q ss_pred             cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-------CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------~~v~vi~~~  308 (438)
                      ++++.+.+.|+.+..++.+|..+   .++||||||+|.+...++....+....+++.|+..+++       ..++||++|
T Consensus        87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~t  166 (297)
T 3b9p_A           87 AASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAAT  166 (297)
T ss_dssp             STTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEE
T ss_pred             HHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeec
Confidence            99999999999888888887765   46999999999999887654444555677788877764       357788877


Q ss_pred             CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706          309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  388 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (438)
                      +....     .+|++++||+..+.++.|+.+++..|++.++.+..           ..++.+.+..+.....      ..
T Consensus       167 n~~~~-----l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~~~~la~~~~------g~  224 (297)
T 3b9p_A          167 NRPQE-----LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG-----------SPLDTEALRRLAKITD------GY  224 (297)
T ss_dssp             SCGGG-----BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS-----------CCSCHHHHHHHHHHTT------TC
T ss_pred             CChhh-----CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHcC------CC
Confidence            65542     28899999999999999999999999999887642           2345667777776653      55


Q ss_pred             cccchHHHHHHHHHHhhccccCC---CCChhhhhhccHHHHHHHHHHHHh
Q 013706          389 NGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       389 n~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      .++++.++++.|...+..+....   .....+...|+.+||..|++.++|
T Consensus       225 ~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~  274 (297)
T 3b9p_A          225 SGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRR  274 (297)
T ss_dssp             CHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCC
Confidence            67899999998877665554211   111223357999999999887665

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.94  E-value=1e-26  Score=228.65  Aligned_cols=233  Identities=22%  Similarity=0.299  Sum_probs=181.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|.+.++.+++++...+    ..+..+..++...+++++|+||||||||++|+++|.++..       +++.++
T Consensus        28 ~~f~dv~G~~~~k~~l~~lv~~l----~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-------~~i~i~   96 (499)
T 2dhr_A           28 VTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS   96 (499)
T ss_dssp             CCTTSSCSCHHHHHHHHHHHHHH----HCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred             CCHHHcCCcHHHHHHHHHHHHHh----hchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEe
Confidence            46899999999999999986654    2334455566667889999999999999999999998753       899999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      ++++...++|.....++.+|+.+.   ++|+||||+|.+...++..   .++...+.+++|+..|++    ..+++++++
T Consensus        97 g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAat  176 (499)
T 2dhr_A           97 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT  176 (499)
T ss_dssp             GGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECC
T ss_pred             hhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEec
Confidence            999999999998889999999885   3899999999998876632   344556788999999985    346677776


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +....     .||++++  ||+..|.|+.|+.++|.+|++.+++..         .+.++++.+   . +.+.|      
T Consensus       177 n~p~~-----LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~---------~l~~dv~l~---~-lA~~t------  232 (499)
T 2dhr_A          177 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA---L-LAKRT------  232 (499)
T ss_dssp             SCGGG-----SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS---------CCCCSSTTH---H-HHTTS------
T ss_pred             CChhh-----cCcccccccccceEEecCCCCHHHHHHHHHHHHhcC---------CCChHHHHH---H-HHHhc------
Confidence            66544     2999988  999999999999999999999877542         333443332   2 33334      


Q ss_pred             cccc-cchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          387 EMNG-GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       387 ~~n~-~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      +|+. |+|.+++++|...+..+         ....|+.+||.+|++.+.+
T Consensus       233 ~G~~gadL~~lv~~Aa~~A~~~---------~~~~It~~dl~~al~~v~~  273 (499)
T 2dhr_A          233 PGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAADRVMM  273 (499)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTTT---------CCSSCCSHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHHhc
Confidence            5665 99999999998776322         2246889999999988764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=3.6e-26  Score=194.63  Aligned_cols=129  Identities=36%  Similarity=0.536  Sum_probs=105.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+..++.+++++|++    .|++++.+|..|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|
T Consensus        35 ~~g~t~l~~a~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A  110 (169)
T 4gpm_A           35 SDGRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA  110 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh----cccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            368888888888888888888888    6788888888888888888888888888888888888888888888888888


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      +    ..|+.+++++|+++|++++.+|.+|+||| +.|+..++.+++++|++.|++.+
T Consensus       111 ~----~~g~~~~v~~Ll~~gad~~~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          111 A----ENGHKEVVKLLISKGADVNTSDSDGRTPL-DLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             H----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHTC-----
T ss_pred             H----HcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCcC
Confidence            8    77888888888888888888888888888 55556778888888888887654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.93  E-value=5.8e-25  Score=200.50  Aligned_cols=229  Identities=23%  Similarity=0.318  Sum_probs=166.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|.+.++.+++++...+..+.....    .+...+++++|+||||||||+++++++..+..       +++.++
T Consensus        13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~----~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-------~~i~~~   81 (254)
T 1ixz_A           13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHE----MGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS   81 (254)
T ss_dssp             CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHH----TTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred             CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHH----cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEee
Confidence            4689999999999999988765543333333    23345678999999999999999999997653       788899


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccCC----CEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG----KVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~----~v~vi~~~  308 (438)
                      +.++...+.|+....+..+|+.+.   ++++|+||+|.+...++..   ......+.++.++..|+++    .+++++++
T Consensus        82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t  161 (254)
T 1ixz_A           82 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT  161 (254)
T ss_dssp             HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEcc
Confidence            888888888888888888998875   4899999999998765431   2344567788999888762    34555555


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +....     .||++++  ||+..+.++.|+.+++.+|++.++...         .+..+++..   .++..+.      
T Consensus       162 ~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~---~la~~~~------  218 (254)
T 1ixz_A          162 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA---LLAKRTP------  218 (254)
T ss_dssp             SCGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---------CBCTTCCHH---HHHHTCT------
T ss_pred             CCchh-----CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC---------CCCcccCHH---HHHHHcC------
Confidence            55443     2899988  999999999999999999999887542         333443333   3333321      


Q ss_pred             cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                      ..++|++++++++|...+..+         ....|+.+||++|+
T Consensus       219 G~~~~dl~~~~~~a~~~a~~~---------~~~~I~~~dl~~a~  253 (254)
T 1ixz_A          219 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA  253 (254)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHh---------cCCCcCHHHHHHHh
Confidence            334599999999998776322         22469999999886

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.92  E-value=7.4e-28  Score=221.55  Aligned_cols=233  Identities=19%  Similarity=0.312  Sum_probs=169.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++.+++.+.+++..+..+......+    ...+.++||+||||||||++|+++|+.+..       +++.+++
T Consensus         9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~v~~   77 (268)
T 2r62_A            9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLG----AKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-------PFFSMGG   77 (268)
T ss_dssp             CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHS----CCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-------CCCCCCS
T ss_pred             CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCC----CCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEech
Confidence            58899999999999999877666555444433    345678999999999999999999998865       7788888


Q ss_pred             ccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC----chhHHHHHHHHHhhccC-----CCEEEEEe
Q 013706          240 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG-----GKVVVIFA  307 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~~~~-----~~v~vi~~  307 (438)
                      +++...+.|.....++.+|+.+.   ++||||||+|.+.++++.+.    +....++++.|+..+++     ..++||++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t  157 (268)
T 2r62_A           78 SSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAA  157 (268)
T ss_dssp             CTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEEC
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEe
Confidence            89888888888777777777664   49999999999988653211    11122455778888865     34788888


Q ss_pred             cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                      ++....     .+|++++  ||+..+.|+.|+.+++.+|++.++....         +..+.+.+.+...+.        
T Consensus       158 tn~~~~-----ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~la~~~~--------  215 (268)
T 2r62_A          158 TNRPEI-----LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK---------LANDVNLQEVAKLTA--------  215 (268)
T ss_dssp             BSCCTT-----SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC---------CCSSCCTTTTTSSSC--------
T ss_pred             cCCchh-----cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC---------CCCccCHHHHHHHcC--------
Confidence            765543     2888888  9999999999999999999999887542         222333333322221        


Q ss_pred             ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                       ..+++++++++++|...+..+         +...|+.+|+.+|++.+.|
T Consensus       216 -g~~g~dl~~l~~~a~~~a~~~---------~~~~i~~~~~~~a~~~~~~  255 (268)
T 2r62_A          216 -GLAGADLANIINEAALLAGRN---------NQKEVRQQHLKEAVERGIA  255 (268)
T ss_dssp             -SSCHHHHHHHHHHHHHTTSSS---------CCCSCCHHHHHTSCTTCCC
T ss_pred             -CCCHHHHHHHHHHHHHHHHHh---------ccCCcCHHHHHHHHHHHhh
Confidence             345689999999988776221         2346899999988876554

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.92  E-value=1.7e-24  Score=207.72  Aligned_cols=256  Identities=19%  Similarity=0.247  Sum_probs=174.9

Q ss_pred             HHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhcCC--CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC
Q 013706          155 DELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGL--KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT  231 (438)
Q Consensus       155 ~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~  231 (438)
                      ..+...+++ ++|++.+++.+...+.....   +...+.  .....++.++||+||||||||++|+++|+.++.      
T Consensus         7 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~------   77 (363)
T 3hws_A            7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYK---RLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV------   77 (363)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHHHHHHH---HHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHHHh---hhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC------
Confidence            344555655 59999999999887643322   222221  112236789999999999999999999998854      


Q ss_pred             CCEEEeeccccccc-ccccc-hHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC
Q 013706          232 DRVTEVQRTDLVGE-FVGHT-GPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG  299 (438)
Q Consensus       232 ~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~  299 (438)
                       +|+.++++++... |+|+. ...++..|..+       .++||||||+|++.+.+.+.+   ......+++.|++.|++
T Consensus        78 -~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg  156 (363)
T 3hws_A           78 -PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG  156 (363)
T ss_dssp             -CEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred             -CEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcC
Confidence             8999999988754 88886 55667776554       569999999999998765432   22334588999999983


Q ss_pred             C-----------------------CEEEEEecCChhHHHHhh--------------------------------------
Q 013706          300 G-----------------------KVVVIFAGYSEPMKRVIA--------------------------------------  318 (438)
Q Consensus       300 ~-----------------------~v~vi~~~~~~~~~~~~~--------------------------------------  318 (438)
                      .                       ++++|++++...++.++.                                      
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~  236 (363)
T 3hws_A          157 TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIK  236 (363)
T ss_dssp             C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHH
T ss_pred             ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHH
Confidence            1                       234445544332222211                                      


Q ss_pred             --hCcCccCCCCcceeCCCCCHHHHHHHHHH----HHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccc
Q 013706          319 --SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL  392 (438)
Q Consensus       319 --~~p~l~~R~~~~i~~~~~~~~e~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  392 (438)
                        ..|+|.+||+.++.|++|+.+++.+|+..    ++.+........  .....++++++..++.+.+    ..++|+|+
T Consensus       237 ~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~--~~~l~~~~~a~~~L~~~~~----~~~~gaR~  310 (363)
T 3hws_A          237 FGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLE--GVDLEFRDEALDAIAKKAM----ARKTGARG  310 (363)
T ss_dssp             HTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTT--TCEEEECHHHHHHHHHHHH----HTTCTTTT
T ss_pred             cCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CceEEECHHHHHHHHHhhc----CCccCchH
Confidence              27899999999999999999999999986    443322111111  2334578899999997433    12788999


Q ss_pred             hHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHH
Q 013706          393 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA  428 (438)
Q Consensus       393 l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~  428 (438)
                      |++++++++..+..++....  ......|+.+++++
T Consensus       311 L~~~ie~~~~~~l~~~~~~~--~~~~~~I~~~~v~~  344 (363)
T 3hws_A          311 LRSIVEAALLDTMYDLPSME--DVEKVVIDESVIDG  344 (363)
T ss_dssp             HHHHHHHHHHHHHHSTTTCC--CSEEEECHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhccccc--CCceeEEcHHHHhC
Confidence            99999999999877764321  11234566666654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.91  E-value=4.5e-24  Score=197.15  Aligned_cols=228  Identities=23%  Similarity=0.313  Sum_probs=166.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|.+.++.+++++...+..+......    +...+++++|+||||||||+++++++..+..       .++.++
T Consensus        37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~----~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-------~~i~~~  105 (278)
T 1iy2_A           37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM----GARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS  105 (278)
T ss_dssp             CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHT----TCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred             CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHc----CCCCCCeEEEECCCcChHHHHHHHHHHHcCC-------CEEEec
Confidence            46899999999999999887655433333332    3345667999999999999999999997753       788899


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccCC----CEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG----KVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~----~v~vi~~~  308 (438)
                      +.++...+.|.....+..+|+.+.   ++++|+||+|.+...+...   ......+.++.++..++++    .+++++++
T Consensus       106 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t  185 (278)
T 1iy2_A          106 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT  185 (278)
T ss_dssp             HHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEE
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEec
Confidence            888888788887788888888764   4899999999997765421   2344567788888888763    25555555


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +....     .||++++  ||+..+.|+.|+.+++.+|++.++...         .+..+++..   .+.. .|      
T Consensus       186 ~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~---~la~-~~------  241 (278)
T 1iy2_A          186 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA---LLAK-RT------  241 (278)
T ss_dssp             SCTTS-----SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHH---HHHH-TC------
T ss_pred             CCchh-----CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC---------CCCcccCHH---HHHH-Hc------
Confidence            54433     2888887  999999999999999999999887542         333333333   2333 33      


Q ss_pred             ccc-ccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          387 EMN-GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       387 ~~n-~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                      +|+ +|+|++++++|...+..+         +...|+.+||++|+
T Consensus       242 ~G~~~~dl~~l~~~a~~~a~~~---------~~~~I~~~dl~~a~  277 (278)
T 1iy2_A          242 PGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA  277 (278)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHT---------TCCSBCHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHh
Confidence            444 489999999998776322         22469999999886

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.91  E-value=1.6e-23  Score=196.71  Aligned_cols=259  Identities=17%  Similarity=0.256  Sum_probs=174.1

Q ss_pred             HHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCC-CCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706          156 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKV-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  233 (438)
Q Consensus       156 ~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~  233 (438)
                      ++...++ .++|++.+++.+...+...   ..+....... ....+.++||+||||||||++|+++++.+..       +
T Consensus         8 ~l~~~l~~~i~G~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-------~   77 (310)
T 1ofh_A            8 EIVSELDQHIIGQADAKRAVAIALRNR---WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P   77 (310)
T ss_dssp             HHHHHHHTTCCSCHHHHHHHHHHHHHH---HHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------C
T ss_pred             HHHHHHhhhcCChHHHHHHHHHHHHHH---HhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------C
Confidence            3444554 4899999999988765431   1110000000 0135679999999999999999999998854       8


Q ss_pred             EEEeecccccc-cccccc-hHHHHHHHHHc--------cCcEEEEeCcccccCCCCCCCchhH-HHHHHHHHhhccCC--
Q 013706          234 VTEVQRTDLVG-EFVGHT-GPKTRRRIKEA--------EGGILFVDEAYRLIPMQKADDKDYG-IEALEEIMSVMDGG--  300 (438)
Q Consensus       234 ~~~~~~~~~~~-~~~g~~-~~~~~~~~~~a--------~~~il~iDEid~l~~~~~~~~~~~~-~~~~~~ll~~~~~~--  300 (438)
                      ++.++++.+.. .++|.. ...++.++..+        .++||||||+|.+.+..+....+.. ..+.+.|++.+++.  
T Consensus        78 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~  157 (310)
T 1ofh_A           78 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV  157 (310)
T ss_dssp             EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE
T ss_pred             EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeE
Confidence            89999988766 566653 34556655533        3689999999999987654433333 34578888888864  


Q ss_pred             ----------CEEEEEecC---ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHH----HHhccccccccccccc
Q 013706          301 ----------KVVVIFAGY---SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKL  363 (438)
Q Consensus       301 ----------~v~vi~~~~---~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~----~l~~~~~~~~~~~~~~  363 (438)
                                .+++|++++   .++ ..   .+|++++||+..+.|++|+.+++.+|++.    ++.+......  ....
T Consensus       158 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~---l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~--~~~~  231 (310)
T 1ofh_A          158 STKHGMVKTDHILFIASGAFQVARP-SD---LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA--TEGV  231 (310)
T ss_dssp             EETTEEEECTTCEEEEEECCSSSCG-GG---SCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHH--HTTC
T ss_pred             ecccccccCCcEEEEEcCCcccCCc-cc---CCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHH--hcCC
Confidence                      577888753   222 22   38999999998899999999999999984    2221110000  0112


Q ss_pred             cccccHHHHHHHHHHHhhHh-hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          364 HSSCSMDAIAALIEKETTEK-QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~-~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      ...++++++..++...|... ....||+|.+.++++++...+..+....   ......|+.+|+.++++.+
T Consensus       232 ~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~---~~~~~~i~~~~v~~~l~~~  299 (310)
T 1ofh_A          232 NIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM---NGQTVNIDAAYVADALGEV  299 (310)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGC---TTCEEEECHHHHHHHTCSS
T ss_pred             eeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccc---cCCEEEEeeHHHHHHHHhh
Confidence            24578899999999887211 1124899999999999987765443311   1223459999999988643

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.91  E-value=5.3e-23  Score=198.04  Aligned_cols=258  Identities=17%  Similarity=0.277  Sum_probs=178.6

Q ss_pred             HHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCC-CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706          155 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  232 (438)
Q Consensus       155 ~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~  232 (438)
                      .+....++ .++|++.+|+.+...+   ..+.++...+..... .++.++||+||||||||++|+++|+.++.       
T Consensus         7 ~~i~~~Ld~~IvGqe~ak~~l~~av---~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~-------   76 (444)
T 1g41_A            7 REIVSELDQHIIGQADAKRAVAIAL---RNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------   76 (444)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHH---HHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH---HHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC-------
Confidence            34555666 6899999999997763   344555555544333 25789999999999999999999998865       


Q ss_pred             CEEEeecccccc-ccccc-chHHHHHHH----------------------------------------------------
Q 013706          233 RVTEVQRTDLVG-EFVGH-TGPKTRRRI----------------------------------------------------  258 (438)
Q Consensus       233 ~~~~~~~~~~~~-~~~g~-~~~~~~~~~----------------------------------------------------  258 (438)
                      +|+.++++.+.. .|+|+ .+..++.+|                                                    
T Consensus        77 ~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~  156 (444)
T 1g41_A           77 PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTR  156 (444)
T ss_dssp             CEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------
T ss_pred             CceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCH
Confidence            888888888777 48885 344333322                                                    


Q ss_pred             --------------------------------------------------------------------------------
Q 013706          259 --------------------------------------------------------------------------------  258 (438)
Q Consensus       259 --------------------------------------------------------------------------------  258 (438)
                                                                                                      
T Consensus       157 ~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~  236 (444)
T 1g41_A          157 QAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLIN  236 (444)
T ss_dssp             ---------------------------------------------------------------------CCGGGSCSSCC
T ss_pred             HHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccC
Confidence                                                                                            


Q ss_pred             ---------HHc-cCcEEEEeCcccccCCCCCCCchhHH-HHHHHHHhhccC------------CCEEEEEecC---Chh
Q 013706          259 ---------KEA-EGGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDG------------GKVVVIFAGY---SEP  312 (438)
Q Consensus       259 ---------~~a-~~~il~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~~~~------------~~v~vi~~~~---~~~  312 (438)
                               +.| .++|+|+||+|+++.+..+...+.+. .+++.||+.||+            .++++|+++.   .++
T Consensus       237 ~~~~~~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~  316 (444)
T 1g41_A          237 PEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP  316 (444)
T ss_dssp             HHHHHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred             HHHHHHHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence                     223 45799999999999765433445444 477899999986            3577888871   223


Q ss_pred             HHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHH---HHHhccccccccccc-cccccccHHHHHHHHHHHhh-Hhhhcc
Q 013706          313 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH---IKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETT-EKQRRE  387 (438)
Q Consensus       313 ~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~---~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~  387 (438)
                      .+    ..|+|++||+.++.|++|+.+++.+|+.   .++-+....  .++. .....++++++..+++.... ..-...
T Consensus       317 ~d----lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~--~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~  390 (444)
T 1g41_A          317 SD----LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA--LMATEGVNIAFTTDAVKKIAEAAFRVNEKTEN  390 (444)
T ss_dssp             GG----SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH--HHHTTTCEEEECHHHHHHHHHHHHHHHHHSCC
T ss_pred             hh----cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHH--HhcccCceEEECHHHHHHHHHHHHHhccCCcc
Confidence            32    2689999999999999999999999993   222221100  0111 23456789999999986542 111135


Q ss_pred             ccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          388 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       388 ~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                      .++|.|+++++++.+..+.++....   .....|+.+++.+.+.
T Consensus       391 ~GaR~L~~~ie~~~~~~~~~~~~~~---~~~~~i~~~~v~~~l~  431 (444)
T 1g41_A          391 IGARRLHTVMERLMDKISFSASDMN---GQTVNIDAAYVADALG  431 (444)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHGGGCT---TCEEEECHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHHHhhccccC---CCeEEEeHHHHHHhcC
Confidence            7789999999999999887775432   2346788888887664

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=1.5e-24  Score=178.07  Aligned_cols=126  Identities=25%  Similarity=0.330  Sum_probs=118.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCC-CCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-GMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~   80 (438)
                      ..|+||||+|+..|+.+++++|++    .+++++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |+||||+
T Consensus        10 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~   84 (136)
T 1d9s_A           10 GSSDAGLATAAARGQVETVRQLLE----AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHD   84 (136)
T ss_dssp             CCCSCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHH----cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHH
Confidence            478999999999999999999999    688999999999999999999 9999999999999999999999 9999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      |+    ..++.+++++|+++|++++..|..|+||| +.|...++.+++++|+.+|++
T Consensus        85 A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           85 AA----REGFLDTLVVLHRAGARLDVCDAWGRLPV-DLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HH----HHTCHHHHHHHHHTCCCCCCCSSSSSCHH-HHHHHHTCHHHHHHHHHHHCC
T ss_pred             HH----HcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence            99    88999999999999999999999999999 666667889999999987753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.90  E-value=1.2e-23  Score=178.95  Aligned_cols=127  Identities=35%  Similarity=0.538  Sum_probs=119.2

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706            6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS   85 (438)
Q Consensus         6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   85 (438)
                      ++|+.||..|+.++|+.|++    .|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+   
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~----~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~---   78 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE----NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA---   78 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---
T ss_pred             HHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHH---
Confidence            58999999999999999999    78999999999999999999999999999999999999999999999999999   


Q ss_pred             cccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           86 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        86 ~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                       ..|+.+++++|+++|++++.+|.+|+||| |.|+..++.+++++|+..+++...+
T Consensus        79 -~~g~~~~v~~Ll~~gadvn~~d~~G~TpL-h~A~~~g~~~~v~~Ll~~gad~~~~  132 (169)
T 4gpm_A           79 -ENGHKEVVKLLISKGADVNAKDSDGRTPL-HHAAENGHKEVVKLLISKGADVNTS  132 (169)
T ss_dssp             -HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             -HcCCHHHHHHHHHCcCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCcccc
Confidence             88999999999999999999999999999 6666678999999999988775543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=7.7e-24  Score=173.77  Aligned_cols=124  Identities=31%  Similarity=0.430  Sum_probs=116.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.||||+||..|+.+++++|++    .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            57899999999999999999999    68899999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                          ..++.+++++|+++|++++..|.+|+||+ +.|+..++.+++++|+..|
T Consensus        89 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl-~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 ----FIGHLEIAEVLLKHGADVNAQDKFGKTAF-DISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             ----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHC-
T ss_pred             ----HcCCHHHHHHHHHcCCCCcCcCCCCCCHH-HHHHHCCCHHHHHHHHHcC
Confidence                88999999999999999999999999999 6666678889999998654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=4e-23  Score=175.32  Aligned_cols=124  Identities=35%  Similarity=0.565  Sum_probs=104.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|+||||+||..|+.+++++|++    .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        41 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  116 (165)
T 3twr_A           41 RQSTPLHFAAGYNRVSVVEYLLQ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA  116 (165)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcChHHHHHHHHh----cCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            57789999999899999998888    67888888888889999999988899999999988888888888889999888


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE  136 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~  136 (438)
                          ..++.+++++|+++|++++.+|..|+||+ +++.. ++.+++++|+..++
T Consensus       117 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          117 ----AKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             ----HTTCHHHHHHHHHTTCCTTCCCTTSCCTG-GGSCT-TCHHHHHHHHTC--
T ss_pred             ----HcCCHHHHHHHHHcCCCCcccCCCCCChh-HhHhc-CChHHHHHHhhccc
Confidence                77888888888888888888888899998 44554 66788888887654

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.90  E-value=3.6e-23  Score=192.08  Aligned_cols=163  Identities=15%  Similarity=0.206  Sum_probs=120.0

Q ss_pred             CCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEE
Q 013706          195 GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILF  267 (438)
Q Consensus       195 ~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~  267 (438)
                      +...|.++||+||||||||++|+++|+.++.       +++.++++++.++|+|+++..++..|+.+       .++|||
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~-------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~  104 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI-------NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF  104 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC-------CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            3456789999999999999999999999965       89999999999999999999999999888       679999


Q ss_pred             EeCcccccCCCCCCC--chhHHHHHHHHHhhccC---------------CCEEEEEecCChhHHHHhhhCcCccC--CCC
Q 013706          268 VDEAYRLIPMQKADD--KDYGIEALEEIMSVMDG---------------GKVVVIFAGYSEPMKRVIASNEGFCR--RVT  328 (438)
Q Consensus       268 iDEid~l~~~~~~~~--~~~~~~~~~~ll~~~~~---------------~~v~vi~~~~~~~~~~~~~~~p~l~~--R~~  328 (438)
                      |||||++.+++++.+  ......+++.|++.||+               .+++||+||+.....     +|+++|  ||+
T Consensus       105 iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~l-----d~al~R~~R~d  179 (293)
T 3t15_A          105 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTL-----YAPLIRDGRME  179 (293)
T ss_dssp             EECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC-------CHHHHHHHEE
T ss_pred             EechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccC-----CHHHhCCCCCc
Confidence            999999998655322  22345677888888762               357888887654432     788886  998


Q ss_pred             cceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706          329 KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ  384 (438)
Q Consensus       329 ~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (438)
                      ..|.+  |+.+++.+|++.++...             .++.+.++.++.++.++++
T Consensus       180 ~~i~~--P~~~~r~~Il~~~~~~~-------------~~~~~~l~~~~~~~~~~~l  220 (293)
T 3t15_A          180 KFYWA--PTREDRIGVCTGIFRTD-------------NVPAEDVVKIVDNFPGQSI  220 (293)
T ss_dssp             EEEEC--CCHHHHHHHHHHHHGGG-------------CCCHHHHHHHHHHSCSCCH
T ss_pred             eeEeC--cCHHHHHHHHHHhccCC-------------CCCHHHHHHHhCCCCcccH
Confidence            88875  59999999999887642             3567788888888765444

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=1.3e-23  Score=172.62  Aligned_cols=124  Identities=26%  Similarity=0.336  Sum_probs=112.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.+++++|++    .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         8 ~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            8 HRGETLLHIASIKGDIPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDA   83 (137)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHH
Confidence            479999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                      +    ..++.+++++|+++|++++.+|..|.||+ +.|...+..+++.++...
T Consensus        84 ~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           84 A----KNGHVDIVKLLLSYGASRNAVNIFGLRPV-DYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             H----HTTCHHHHHHHHHTTCCTTCCCTTSCCGG-GGCCCHHHHHHHSCC---
T ss_pred             H----HcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHhhccHHHHHhhcccc
Confidence            9    88999999999999999999999999999 556556666666655543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.90  E-value=7.2e-23  Score=194.70  Aligned_cols=206  Identities=20%  Similarity=0.271  Sum_probs=155.2

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|.+.+++.+..++.....           ...++.++||+||||||||++|+++++.+..       +++.+++
T Consensus        27 ~~~~iiG~~~~~~~l~~~l~~~~~-----------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-------~~~~~~~   88 (338)
T 3pfi_A           27 NFDGYIGQESIKKNLNVFIAAAKK-----------RNECLDHILFSGPAGLGKTTLANIISYEMSA-------NIKTTAA   88 (338)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHH-----------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEEG
T ss_pred             CHHHhCChHHHHHHHHHHHHHHHh-----------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEecc
Confidence            588999999999999987664421           1235678999999999999999999998754       7888887


Q ss_pred             ccccccccccchHHHHHHHHH-ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-----------------
Q 013706          240 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-----------------  301 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~-a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-----------------  301 (438)
                      +.+.      ....+...+.. +.+++|||||||.+.+           ..++.|+..++++.                 
T Consensus        89 ~~~~------~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  151 (338)
T 3pfi_A           89 PMIE------KSGDLAAILTNLSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKID  151 (338)
T ss_dssp             GGCC------SHHHHHHHHHTCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred             hhcc------chhHHHHHHHhccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecC
Confidence            6542      23344555554 5779999999999975           34477888777643                 


Q ss_pred             ---EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706          302 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  378 (438)
Q Consensus       302 ---v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (438)
                         +++|++|+....     .+|+|++||+..+.|++|+.+++..++..++.+..           ..++++++..+.. 
T Consensus       152 ~~~~~~i~atn~~~~-----l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-----------~~~~~~~~~~l~~-  214 (338)
T 3pfi_A          152 LPKFTLIGATTRAGM-----LSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-----------KTCEEKAALEIAK-  214 (338)
T ss_dssp             CCCCEEEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHH-
T ss_pred             CCCeEEEEeCCCccc-----cCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH-
Confidence               678888877554     28899999999999999999999999999887642           3457788888877 


Q ss_pred             HhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706          379 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  432 (438)
Q Consensus       379 ~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~  432 (438)
                      .|      +||.|.+.++++++...+...         +...|+.+++..++..
T Consensus       215 ~~------~G~~r~l~~~l~~~~~~a~~~---------~~~~i~~~~~~~~~~~  253 (338)
T 3pfi_A          215 RS------RSTPRIALRLLKRVRDFADVN---------DEEIITEKRANEALNS  253 (338)
T ss_dssp             TT------TTCHHHHHHHHHHHHHHHHHT---------TCSEECHHHHHHHHHH
T ss_pred             HH------CcCHHHHHHHHHHHHHHHHhh---------cCCccCHHHHHHHHHH
Confidence            56      899999999999987655211         1124556666655544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=2.8e-23  Score=167.52  Aligned_cols=126  Identities=46%  Similarity=0.656  Sum_probs=118.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      +|+||||+|+..|+.+++++|++    .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Confidence            59999999999999999999999    68889999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                          ..++.+++++|+++|++++..|..|.||+ +.|...++.+++++|+..|++
T Consensus        77 ----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           77 ----RNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHTCC
T ss_pred             ----HcChHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCcHHHHHHHHHcCCC
Confidence                88999999999999999999999999999 666667889999999987753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.89  E-value=3e-23  Score=202.73  Aligned_cols=209  Identities=20%  Similarity=0.292  Sum_probs=151.7

Q ss_pred             HHHhhhcChHHHH---HHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706          159 NELSNIVGLHELK---IQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~  235 (438)
                      ..|++++|++.+.   ..+...+..                ....++||+||||||||++|++||+.+..       +|+
T Consensus        23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~-------~f~   79 (447)
T 3pvs_A           23 ENLAQYIGQQHLLAAGKPLPRAIEA----------------GHLHSMILWGPPGTGKTTLAEVIARYANA-------DVE   79 (447)
T ss_dssp             CSTTTCCSCHHHHSTTSHHHHHHHH----------------TCCCEEEEECSTTSSHHHHHHHHHHHTTC-------EEE
T ss_pred             CCHHHhCCcHHHHhchHHHHHHHHc----------------CCCcEEEEECCCCCcHHHHHHHHHHHhCC-------CeE
Confidence            3588999999988   555554331                13468999999999999999999998754       777


Q ss_pred             EeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEec
Q 013706          236 EVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG  308 (438)
Q Consensus       236 ~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~  308 (438)
                      .+++...       ..+.++..++.       +.++||||||||.+....|           +.|+..++++.+++|++|
T Consensus        80 ~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q-----------~~LL~~le~~~v~lI~at  141 (447)
T 3pvs_A           80 RISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ-----------DAFLPHIEDGTITFIGAT  141 (447)
T ss_dssp             EEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHTTSCEEEEEE
T ss_pred             EEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH-----------HHHHHHHhcCceEEEecC
Confidence            7776432       22334444443       3579999999999987655           789999999999999999


Q ss_pred             CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc-ccccccHHHHHHHHHHHhhHhhhcc
Q 013706          309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-LHSSCSMDAIAALIEKETTEKQRRE  387 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  387 (438)
                      +.++...+   +++|++|+ .++.|++|+.+++..++.+++.+...     ++. ....++++++..+... |      .
T Consensus       142 t~n~~~~l---~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~-----~~~~~~~~i~~~al~~L~~~-~------~  205 (447)
T 3pvs_A          142 TENPSFEL---NSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTR-----GYGGQDIVLPDETRRAIAEL-V------N  205 (447)
T ss_dssp             SSCGGGSS---CHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTT-----SSTTSSEECCHHHHHHHHHH-H------C
T ss_pred             CCCccccc---CHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhh-----hhccccCcCCHHHHHHHHHH-C------C
Confidence            88776544   89999998 58889999999999999999987432     221 2345788888888887 5      8


Q ss_pred             ccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          388 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       388 ~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                      ||.|.+.++++.+...+...       ..+...|+.+|+.+++.
T Consensus       206 Gd~R~lln~Le~a~~~a~~~-------~~~~~~It~e~v~~~l~  242 (447)
T 3pvs_A          206 GDARRALNTLEMMADMAEVD-------DSGKRVLKPELLTEIAG  242 (447)
T ss_dssp             SCHHHHHHHHHHHHHHSCBC-------TTSCEECCHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhcccc-------cCCCCccCHHHHHHHHh
Confidence            99999999999998775211       01223466666665543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=7.4e-24  Score=178.20  Aligned_cols=131  Identities=26%  Similarity=0.338  Sum_probs=117.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCc-HHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT-PLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~   80 (438)
                      ..|.||||+||..|+.++|++|++    .|++++..|..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            578999999999999999999999    68899999999999999985 99999999999999999999999999 9999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                      |+    ..|+.+++++|+++|++++.+|..|+||| +.|+..++.+++++|+..+++...+.
T Consensus        85 A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~~~~~~v~~Ll~~ga~~~~~~  141 (156)
T 1bi7_B           85 AA----REGFLDTLVVLHRAGARLDVRDAWGRLPV-DLAEELGHRDVARYLRAAAGGTRGSN  141 (156)
T ss_dssp             HH----HHTCHHHHHHHHHHTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHSSCC-------
T ss_pred             HH----HCCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHhCHHHHHHHHHHcCCCCCccC
Confidence            99    88999999999999999999999999999 66666789999999999998866654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.89  E-value=2e-23  Score=178.48  Aligned_cols=125  Identities=28%  Similarity=0.349  Sum_probs=72.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|+||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  110 (172)
T 3v30_A           35 RGFTPLIWASAFGEIETVRFLLE----WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV  110 (172)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----cCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            45556666666666666666655    45555555555566666666666666666666656655555555666666655


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE  136 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~  136 (438)
                          ..++.+++++|+++|++++..|..|+||+ +.|...++.+++++|+.++.
T Consensus       111 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A          111 ----RGNHVKCVEALLARGADLTTEADSGYTPM-DLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHH
T ss_pred             ----HcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHhCcHHHHHHHHHHHH
Confidence                45555566666655666555555566665 33444455555555555443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.89  E-value=1.6e-22  Score=195.00  Aligned_cols=261  Identities=16%  Similarity=0.218  Sum_probs=162.8

Q ss_pred             hHHHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHH--------------HhcCCCCCCCCCCceEEecCCCCCHHHHHH
Q 013706          153 KMDELENELSN-IVGLHELKIQLRKWAKGMLLDERR--------------KALGLKVGARRPPHMAFLGNPGTGKTMVAR  217 (438)
Q Consensus       153 ~~~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ll~GppGtGKT~la~  217 (438)
                      ....+...+++ ++|++.+++.+...+.......+.              +.........++.++||+||||||||++|+
T Consensus        11 ~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~   90 (376)
T 1um8_A           11 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ   90 (376)
T ss_dssp             CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred             CHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHH
Confidence            34455566665 799999999998765211111000              000000012356789999999999999999


Q ss_pred             HHHHHHHHcCCcCCCCEEEeeccccc-ccccccc-hHHHHHHHH-------HccCcEEEEeCcccccCCCCCCC---chh
Q 013706          218 ILGRLLYMVGILPTDRVTEVQRTDLV-GEFVGHT-GPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADD---KDY  285 (438)
Q Consensus       218 ~la~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~-------~a~~~il~iDEid~l~~~~~~~~---~~~  285 (438)
                      ++|+.++.       +++.++++.+. ..++|+. ...+...+.       .+.++||||||+|.+.+.+.+..   ...
T Consensus        91 ~la~~l~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~  163 (376)
T 1um8_A           91 TLAKHLDI-------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVS  163 (376)
T ss_dssp             HHHHHTTC-------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------
T ss_pred             HHHHHhCC-------CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccc
Confidence            99998754       88888888765 4567764 444555544       44679999999999988643211   111


Q ss_pred             HHHHHHHHHhhccCC-----------------------CEEEEEecCChhHHHHh-------------------------
Q 013706          286 GIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPMKRVI-------------------------  317 (438)
Q Consensus       286 ~~~~~~~ll~~~~~~-----------------------~v~vi~~~~~~~~~~~~-------------------------  317 (438)
                      ...+++.|+..|++.                       ++++|++++...++..+                         
T Consensus       164 ~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~  243 (376)
T 1um8_A          164 GEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAIL  243 (376)
T ss_dssp             CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSG
T ss_pred             hHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHH
Confidence            224778888888853                       24677766533333211                         


Q ss_pred             -----------hhCcCccCCCCcceeCCCCCHHHHHHHHHH----HHhccccccccccccccccccHHHHHHHHHHHhhH
Q 013706          318 -----------ASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE  382 (438)
Q Consensus       318 -----------~~~p~l~~R~~~~i~~~~~~~~e~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (438)
                                 ...|+|.+||+.++.|++++.+++.+|+..    ++.+........+  ....++++++..++.+.|  
T Consensus       244 ~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~l~~~~~--  319 (376)
T 1um8_A          244 HLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDE--VDLIFEEEAIKEIAQLAL--  319 (376)
T ss_dssp             GGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTT--CEEEECHHHHHHHHHHHH--
T ss_pred             hhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcC--ceEEECHHHHHHHHHHhc--
Confidence                       125889999999999999999999999973    3322111000011  234578899999999876  


Q ss_pred             hhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHH
Q 013706          383 KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG  429 (438)
Q Consensus       383 ~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a  429 (438)
                        ...+|+|.++++++++...+..+....   ......|+.+++.++
T Consensus       320 --~~~~~~R~L~~~le~~~~~~~~~~~~~---~~~~~~i~~~~v~~~  361 (376)
T 1um8_A          320 --ERKTGARGLRAIIEDFCLDIMFDLPKL---KGSEVRITKDCVLKQ  361 (376)
T ss_dssp             --HTTCTGGGHHHHHHHHHHHHHHTGGGG---TTSEEEECHHHHTTS
T ss_pred             --ccccCcHHHHHHHHHHHHHHHhhccCC---CCCEEEEeHHHhcCC
Confidence              124899999999999999876665422   123356888887654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=7.3e-23  Score=176.19  Aligned_cols=126  Identities=25%  Similarity=0.304  Sum_probs=83.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|+||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        38 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~  113 (179)
T 3f6q_A           38 HGFSPLHWACREGRSAVVEMLIM----RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC  113 (179)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            46666666666666666666666    46666666666666666666666666666666666666666666666666666


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                          ..++.+++++|+++|++++..|..|.||+ +.|...+...++++|+..+++
T Consensus       114 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A          114 ----FWGQDQVAEDLVANGALVSICNKYGEMPV-DKAKAPLRELLRERAEKMGQN  163 (179)
T ss_dssp             ----HTTCHHHHHHHHHTTCCSSBCCTTSCCGG-GGSCHHHHHHHHHHHHHTTCC
T ss_pred             ----HcCCHHHHHHHHHCCCCcchhccCCCCcH-HHHHHHHHHHHHHHHHHhhcC
Confidence                55666666666666666666666666666 444445566666666665544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.89  E-value=6.2e-23  Score=171.88  Aligned_cols=120  Identities=33%  Similarity=0.498  Sum_probs=63.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|+||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        33 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  108 (153)
T 1awc_B           33 LGTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT  108 (153)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            34555555555555555555555    34455555555555555555555555555555555555555555555555555


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL  131 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL  131 (438)
                          ..++.+++++|+++|++++.+|..|.||+ +.|...++.+++++|
T Consensus       109 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          109 ----EHNHQEVVELLIKYGADVHTQSKFCKTAF-DISIDNGNEDLAEIL  152 (153)
T ss_dssp             ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHH
T ss_pred             ----HcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHh
Confidence                44555555555555555555555555555 333334444444443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=5.5e-23  Score=165.53  Aligned_cols=109  Identities=28%  Similarity=0.323  Sum_probs=103.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.||||+|+..|+.+++++|++    .+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVA----KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHH----TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH----cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            68899999999999999999999    68899999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCcccccccc
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN  120 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~  120 (438)
                          ..++.+++++|+++|++++.+|..|+||+ +.|.
T Consensus        82 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~  114 (123)
T 3aaa_C           82 ----YEGHVSCVKLLLSKGADKTVKGPDGLTAF-EATD  114 (123)
T ss_dssp             ----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHCC
T ss_pred             ----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHhC
Confidence                88999999999999999999999999999 5553

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.88  E-value=1.3e-22  Score=172.86  Aligned_cols=129  Identities=34%  Similarity=0.455  Sum_probs=108.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .+.||||+||..|+.++|++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccchHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            35688899999899999998888    67888888888889999999888889999998888888888888889999888


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                          ..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...
T Consensus        89 ----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~  141 (169)
T 2y1l_E           89 ----LFGHLEIVEVLLKNGADVNANDMEGHTPL-HLAAMFGHLEIVEVLLKNGADVNA  141 (169)
T ss_dssp             ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             ----HcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence                77888888888888888888888888998 555556788888888887766443

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.88  E-value=3.2e-22  Score=192.52  Aligned_cols=217  Identities=17%  Similarity=0.211  Sum_probs=154.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++.+++.+..+...+.           .+..++.++||+||||||||++|+++++.+..     ..+++.+++
T Consensus        42 ~~~~ivG~~~~~~~l~~l~~~~~-----------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~~~~~~  105 (368)
T 3uk6_A           42 ASQGMVGQLAARRAAGVVLEMIR-----------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-----DTPFTAIAG  105 (368)
T ss_dssp             EETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-----SCCEEEEEG
T ss_pred             chhhccChHHHHHHHHHHHHHHH-----------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-----cCCcccccc
Confidence            38899999999998877655442           11234578999999999999999999998853     236666665


Q ss_pred             ccccccc-------------------------------------------------cccchHHHHHHHHHcc--------
Q 013706          240 TDLVGEF-------------------------------------------------VGHTGPKTRRRIKEAE--------  262 (438)
Q Consensus       240 ~~~~~~~-------------------------------------------------~g~~~~~~~~~~~~a~--------  262 (438)
                      ..+...+                                                 .|+....++..+..+.        
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~  185 (368)
T 3uk6_A          106 SEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGK  185 (368)
T ss_dssp             GGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcc
Confidence            5433222                                                 2233444555553331        


Q ss_pred             ----CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--CEEEEEec---------CChhHHHHhhhCcCccCCC
Q 013706          263 ----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--KVVVIFAG---------YSEPMKRVIASNEGFCRRV  327 (438)
Q Consensus       263 ----~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--~v~vi~~~---------~~~~~~~~~~~~p~l~~R~  327 (438)
                          ++||||||+|.+.+           ..++.|+..+++.  .+++++++         +.++...+   +|++++||
T Consensus       186 ~~~~~~vl~IDEi~~l~~-----------~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l---~~~l~sR~  251 (368)
T 3uk6_A          186 AEIIPGVLFIDEVHMLDI-----------ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGI---PIDLLDRL  251 (368)
T ss_dssp             ---CBCEEEEESGGGSBH-----------HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTC---CHHHHTTE
T ss_pred             ccccCceEEEhhccccCh-----------HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccC---CHHHHhhc
Confidence                36999999999975           4568888888763  34444443         11222222   78999999


Q ss_pred             CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhcc
Q 013706          328 TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR  407 (438)
Q Consensus       328 ~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r  407 (438)
                      .. +.|++|+.+++.+|++.++.+..           ..++++++..++...+      +||.|.+.+++++|...+..+
T Consensus       252 ~~-i~~~~~~~~e~~~il~~~~~~~~-----------~~~~~~~l~~l~~~~~------~G~~r~~~~ll~~a~~~A~~~  313 (368)
T 3uk6_A          252 LI-VSTTPYSEKDTKQILRIRCEEED-----------VEMSEDAYTVLTRIGL------ETSLRYAIQLITAASLVCRKR  313 (368)
T ss_dssp             EE-EEECCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHT
T ss_pred             cE-EEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHh
Confidence            55 89999999999999999887642           3467888888888776      589999999999998776322


Q ss_pred             ccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          408 LSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       408 ~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                               +...|+.+|+.++++.+
T Consensus       314 ---------~~~~It~~~v~~a~~~~  330 (368)
T 3uk6_A          314 ---------KGTEVQVDDIKRVYSLF  330 (368)
T ss_dssp             ---------TCSSBCHHHHHHHHHHS
T ss_pred             ---------CCCCCCHHHHHHHHHHh
Confidence                     34579999999988763

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=2.7e-23  Score=179.81  Aligned_cols=128  Identities=17%  Similarity=0.107  Sum_probs=110.7

Q ss_pred             CCCcHHHHHHHcCCH----HHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC------HHHHHHHHHCCCCcccccC
Q 013706            3 MAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC------NEAAKLLLAHGAFIEAKAN   72 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~------~~~v~~Ll~~g~~~~~~~~   72 (438)
                      .|+||||+|+..|+.    +++++|++    .|+++|.+|..|+||||+|+..|+      .+++++|+++|+++|.+|.
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~  112 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK  112 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBG
T ss_pred             CCCCHHHHHHHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCC
Confidence            489999999999985    58999999    799999999999999999999887      5789999999999999999


Q ss_pred             CCC-cHHHHHhhcccc-cCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           73 NGM-TPLHLSVWYSIR-SEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        73 ~g~-t~L~~A~~~~~~-~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      .|+ ||||+|+..... .++.+++++|++ +|++++.+|..|+||| +.|...+..+++++|..+.
T Consensus       113 ~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL-~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL-EFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHTTTCHHHHHHHHHHH
T ss_pred             CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHHHH
Confidence            999 999999832110 334678999999 8999999999999999 6666678889999988654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.88  E-value=1.4e-22  Score=172.19  Aligned_cols=129  Identities=22%  Similarity=0.228  Sum_probs=115.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.||||.||..|+.+++++|++    .+.+++..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIE----QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            68999999999999999999998    67889999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                          ..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...
T Consensus        78 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~  130 (167)
T 3v31_A           78 ----SKGYTDIVKMLLDCGVDVNEYDWNGGTPL-LYAVHGNHVKCVKMLLESGADPTI  130 (167)
T ss_dssp             ----HHTCHHHHHHHHHHTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             ----HcCCHHHHHHHHHCCCCCCcCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence                78899999999999999999999999999 556567888999999888776544

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.88  E-value=9.2e-23  Score=204.65  Aligned_cols=231  Identities=17%  Similarity=0.204  Sum_probs=156.5

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  240 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  240 (438)
                      .++++|++++++.+.+.+....       ....   .++.+++|+||||||||++|+++|..+..       ++..+++.
T Consensus        80 ~~di~G~~~vk~~i~~~~~l~~-------~~~~---~~g~~vll~Gp~GtGKTtlar~ia~~l~~-------~~~~i~~~  142 (543)
T 3m6a_A           80 DEEHHGLEKVKERILEYLAVQK-------LTKS---LKGPILCLAGPPGVGKTSLAKSIAKSLGR-------KFVRISLG  142 (543)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHHH-------HSSS---CCSCEEEEESSSSSSHHHHHHHHHHHHTC-------EEEEECCC
T ss_pred             HHHhccHHHHHHHHHHHHHHHH-------hccc---CCCCEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEEEec
Confidence            3568999999999876533111       1111   15678999999999999999999998854       66777665


Q ss_pred             cccc---------cccccchHHHHHHHHHc--cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----------
Q 013706          241 DLVG---------EFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----------  299 (438)
Q Consensus       241 ~~~~---------~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----------  299 (438)
                      .+..         .|+|.....+...|..+  .++||||||+|++.+.+++       ...+.|++.|+.          
T Consensus       143 ~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~  215 (543)
T 3m6a_A          143 GVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHY  215 (543)
T ss_dssp             C--------------------CHHHHHHTTCSSSEEEEEEESSSCC----------------CCGGGTCTTTTTBCCCSS
T ss_pred             ccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeeccc
Confidence            5332         57777777888888887  5689999999999986542       245778888863          


Q ss_pred             -------CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc-ccccccHHH
Q 013706          300 -------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-LHSSCSMDA  371 (438)
Q Consensus       300 -------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~~  371 (438)
                             .++++|++++....     .+|+|++|| .+|.|++|+.+++.+|++.++.+...  ..+++. ....+++++
T Consensus       216 ~~~~~~~~~v~iI~ttN~~~~-----l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~--~~~~~~~~~i~i~~~~  287 (543)
T 3m6a_A          216 IEETFDLSKVLFIATANNLAT-----IPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQI--KEHGLKKSNLQLRDQA  287 (543)
T ss_dssp             SCCCCBCSSCEEEEECSSTTT-----SCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHH--HHTTCCGGGCEECHHH
T ss_pred             CCeeecccceEEEeccCcccc-----CCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHH--HHcCCCcccccCCHHH
Confidence                   34678877665432     289999999 57999999999999999988743211  011221 234578899


Q ss_pred             HHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          372 IAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                      +..++..+.     .++|+|.|++.++++++.++.++..+.   .....|+.+|+.+++.
T Consensus       288 l~~l~~~~~-----~~~~vR~L~~~i~~~~~~aa~~~~~~~---~~~~~It~~~l~~~Lg  339 (543)
T 3m6a_A          288 ILDIIRYYT-----REAGVRSLERQLAAICRKAAKAIVAEE---RKRITVTEKNLQDFIG  339 (543)
T ss_dssp             HHHHHHHHC-----CCSSSHHHHHHHHHHHHHHHHHHHTTC---CSCCEECTTTTHHHHC
T ss_pred             HHHHHHhCC-----hhhchhHHHHHHHHHHHHHHHHHHhcC---CcceecCHHHHHHHhC
Confidence            999888664     278999999999999998877754321   2345688888887764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.88  E-value=1e-22  Score=172.18  Aligned_cols=125  Identities=34%  Similarity=0.485  Sum_probs=98.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      ...||||.|+..|+.+++++|++    .+++++..|..|+||||+|+. |+.+++++|+++|++++.++..|.||||+|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQ----NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTT----SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHh----CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            45678888888888888888887    577788888888888888877 8888888888888888888888888888888


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                          ..++.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+.+
T Consensus        79 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           79 ----RAGFLDTLQTLLEFQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             ----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSCC
T ss_pred             ----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHccCC
Confidence                67788888888888888888888888888 555556677788887776654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.88  E-value=2.1e-22  Score=175.40  Aligned_cols=131  Identities=28%  Similarity=0.337  Sum_probs=112.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.+++++|++    .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           33 SYNRTPLMVACMLGMENAIDKLVE----NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TTCCCHHHHHHHHTCGGGHHHHHH----HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            368899999999999999999998    6788888888899999999999999999999999999998888999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      +    ..++.+++++|+++|++++..|..|.||| +.|+..++.+++++|+..+++...+
T Consensus       109 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~  163 (192)
T 2rfm_A          109 I----IFGYSEMSYFLLEHGANVNDRNLEGETPL-IVASKYGRSEIVKKLLELGADISAR  163 (192)
T ss_dssp             H----HHTCHHHHHHHHHTTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCTTCB
T ss_pred             H----HcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            8    77888999999999999999999999999 5555567888888888877765443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.88  E-value=1.8e-22  Score=171.60  Aligned_cols=127  Identities=25%  Similarity=0.329  Sum_probs=118.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+..|+.+++++|++    .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  109 (167)
T 3v31_A           34 EEGFTPLMWAAAHGQIAVVEFLLQ----NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA  109 (167)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHH
Confidence            368999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      +    ..++.+++++|+++|++++..|..|.||+ +.|...++.+++++|..++..
T Consensus       110 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          110 V----HGNHVKCVKMLLESGADPTIETDSGYNSM-DLAVALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             H----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHHH
T ss_pred             H----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHHHHHH
Confidence            9    88999999999999999999999999999 666667889999999876543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.88  E-value=1.2e-22  Score=186.66  Aligned_cols=131  Identities=31%  Similarity=0.355  Sum_probs=114.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.++|++|++    .+++++..+..|.||+|+|+..++.+++++|+++|+++|.+|..|+||||+|
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~----~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A  159 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLK----HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYA  159 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHh----cCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            468999999999999999999998    6788888888999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      |    ..|+.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..|++...+
T Consensus       160 ~----~~g~~~~v~~Ll~~gadvn~~~~~g~t~L-h~A~~~g~~~~v~~Ll~~Gad~~~~  214 (269)
T 4b93_B          160 C----SGGHHELVALLLQHGASINASNNKGNTAL-HEAVIEKHVFVVELLLLHGASVQVL  214 (269)
T ss_dssp             H----HTTCGGGHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             H----HCCCHHHHHHHHHCCCCCCccccCCCcHH-HHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            8    78888999999999999999999999999 5565677888888888888765443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.88  E-value=1.9e-22  Score=180.76  Aligned_cols=130  Identities=21%  Similarity=0.198  Sum_probs=120.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.||||+||..|+.++|++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        20 ~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~   95 (229)
T 2vge_A           20 NPLVLLLDAALTGELEVVQQAVK----EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA   95 (229)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             chhHHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            67899999999999999999999    78899999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccC-CCCCccccccc--cCCCchhHHHHHHhccchHHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLS--NGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d-~~g~t~l~~~a--~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                          ..|+.+++++|+++|++++..+ ..|+||| +.|  +..++.+++++|+..+++....
T Consensus        96 ----~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL-~~A~a~~~~~~~~v~~Ll~~ga~~~~~  152 (229)
T 2vge_A           96 ----SCNDTVICMALVQHGAAIFATTLSDGATAF-EKCDPYREGYADCATYLADVEQSMGLM  152 (229)
T ss_dssp             ----HTTCHHHHHHHHTTTCCTTCCCSSTTCCTG-GGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred             ----HcCCHHHHHHHHHcCCCcccccCCCCCCHH-HHHHHHhcChHHHHHHHHHcCCCcccc
Confidence                8899999999999999999986 6999999 555  7788999999999887664443

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.87  E-value=7.7e-22  Score=194.58  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=86.0

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++.+++.+..++..+.           .+..++.++||+||||||||++|+++|++++.     ..+|+.+++
T Consensus        35 ~~~~iiG~~~~~~~l~~~~~~~~-----------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~-----~~~~~~~~~   98 (456)
T 2c9o_A           35 AASGLVGQENAREACGVIVELIK-----------SKKMAGRAVLLAGPPGTGKTALALAIAQELGS-----KVPFCPMVG   98 (456)
T ss_dssp             EETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT-----TSCEEEEEG
T ss_pred             chhhccCHHHHHHHHHHHHHHHH-----------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC-----CceEEEEeH
Confidence            47899999999999988765442           12346689999999999999999999999863     238999999


Q ss_pred             ccccccccccchHHHHHHHHHc------cCcEEEEeCcccccCCCC
Q 013706          240 TDLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQK  279 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~a------~~~il~iDEid~l~~~~~  279 (438)
                      +++.++++|+++. +++.|..|      .++||||||+|.++++++
T Consensus        99 ~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~  143 (456)
T 2c9o_A           99 SEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET  143 (456)
T ss_dssp             GGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred             HHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence            9999999999987 89999988      459999999999986543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.87  E-value=9.1e-22  Score=184.84  Aligned_cols=223  Identities=18%  Similarity=0.280  Sum_probs=157.2

Q ss_pred             HHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706          157 LENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  235 (438)
Q Consensus       157 ~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~  235 (438)
                      +...+ ++++|++.+++.+...+....       .+......+..+++|+||||||||++|+++|+.+...    ..+++
T Consensus        11 l~~~l~~~i~G~~~~~~~l~~~i~~~~-------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~----~~~~~   79 (311)
T 4fcw_A           11 LEEELHKRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMI   79 (311)
T ss_dssp             HHHHHHTTCCSCHHHHHHHHHHHHHHH-------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC----GGGEE
T ss_pred             HHHHHhhhcCCHHHHHHHHHHHHHHHh-------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC----CcceE
Confidence            33444 467899999998887754331       1112222234579999999999999999999988532    23688


Q ss_pred             Eeecccccc-----ccc-------ccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--
Q 013706          236 EVQRTDLVG-----EFV-------GHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--  300 (438)
Q Consensus       236 ~~~~~~~~~-----~~~-------g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--  300 (438)
                      .++++.+..     .++       |... ..+...+..+.++||||||+|.+.+           .+++.|++.|+++  
T Consensus        80 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~  148 (311)
T 4fcw_A           80 RIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRL  148 (311)
T ss_dssp             EEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEE
T ss_pred             EeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEE
Confidence            888775432     233       2221 3566677778889999999999976           4558888888652  


Q ss_pred             -----------CEEEEEecCCh---------------hHHHHh------hhCcCccCCCCcceeCCCCCHHHHHHHHHHH
Q 013706          301 -----------KVVVIFAGYSE---------------PMKRVI------ASNEGFCRRVTKFFHFNDFNSEELAKILHIK  348 (438)
Q Consensus       301 -----------~v~vi~~~~~~---------------~~~~~~------~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~  348 (438)
                                 ++++|++++..               .+...+      ..+|+|.+||+..+.|++|+.+++.+|++.+
T Consensus       149 ~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~  228 (311)
T 4fcw_A          149 TDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ  228 (311)
T ss_dssp             ECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred             EcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHH
Confidence                       45688887762               111111      2378999999999999999999999999999


Q ss_pred             HhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhcc
Q 013706          349 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR  407 (438)
Q Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r  407 (438)
                      +.+.......  ......++++++..+..+.|    ..++|+|+++++++++...+..+
T Consensus       229 l~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~----~~~gn~R~L~~~i~~~~~~~~~~  281 (311)
T 4fcw_A          229 MSYLRARLAE--KRISLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETPLAQ  281 (311)
T ss_dssp             THHHHHHHHT--TTCEEEECHHHHHHHHHHSC----BTTTBTTTHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHh--CCcEEEeCHHHHHHHHHhCC----CccCCchhHHHHHHHHHHHHHHH
Confidence            9875432111  12235678899999998766    22699999999999998865533

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.87  E-value=1.9e-22  Score=175.62  Aligned_cols=125  Identities=27%  Similarity=0.322  Sum_probs=117.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+..|+.+++++|++    .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        66 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  141 (192)
T 2rfm_A           66 IEGSTALIWAVKNNRLGIAEKLLS----KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVA  141 (192)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            369999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      +    ..++.+++++|+++|++++.+|..|.||+ +.|...++.+++++|+..+
T Consensus       142 ~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          142 S----KYGRSEIVKKLLELGADISARDLTGLTAE-ASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             H----HHTCHHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHHH
T ss_pred             H----HcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHhCcHHHHHHHHhcc
Confidence            9    88999999999999999999999999999 6666678899999998654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.87  E-value=5.8e-22  Score=166.38  Aligned_cols=122  Identities=29%  Similarity=0.384  Sum_probs=79.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW   83 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   83 (438)
                      |.||||+||..|+.++++.|++.   .+.+++..|..|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+ 
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-   76 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAA-   76 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH-
Confidence            34666666666666666666663   234566666666666666 6666666666666666666666666666666666 


Q ss_pred             cccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           84 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        84 ~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                         ..|+.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..
T Consensus        77 ---~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           77 ---RTGFLDTLKVLVEHGADVNVPDGTGALPI-HLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             ---HTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHHTT
T ss_pred             ---HcCcHHHHHHHHHcCCCCCCcCCCCCcHH-HHHHHhChHHHHHHHHhc
Confidence               56666666666666666666666666666 444445566666666654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.86  E-value=4.4e-22  Score=182.79  Aligned_cols=120  Identities=32%  Similarity=0.441  Sum_probs=110.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|.||+|+|+..++.+++++|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|+++|.++..|+||||+|
T Consensus       117 ~~g~t~l~~a~~~~~~~~~~~Ll~----~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A  192 (269)
T 4b93_B          117 ADQAVPLHLACQQGHFQVVKCLLD----SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA  192 (269)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CCCCCccccccccChHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHH
Confidence            478999999999999999999999    7899999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL  132 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~  132 (438)
                      +    ..|+.+++++|+++|++++.+|.+|+|||++ |+..+  .++++|.
T Consensus       193 ~----~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~-A~~~~--~i~~lL~  236 (269)
T 4b93_B          193 V----IEKHVFVVELLLLHGASVQVLNKRQRTAVDC-AEQNS--KIMELLQ  236 (269)
T ss_dssp             H----HTTCHHHHHHHHHTTCCSCCCCTTSCCSGGG-SCTTC--HHHHHTT
T ss_pred             H----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-HHhCC--cHHHHHH
Confidence            9    8899999999999999999999999999954 54433  4555554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.86  E-value=6.2e-22  Score=178.72  Aligned_cols=130  Identities=23%  Similarity=0.238  Sum_probs=114.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.||||+||..|+.++|++|++    .++++|..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+
T Consensus        36 ~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~  111 (239)
T 1ycs_B           36 LPLALLLDSSLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA  111 (239)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred             hhhHHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            46899999999999999999998    67899999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCC-ccccccc-cCCCchhHHHHHHhccchHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLS-NGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~-t~l~~~a-~~~~~~~~~~lL~~~~~~~~~  140 (438)
                          ..|+.+++++|+++|++++..+..|. ||++.+. ...++.+++++|+..+++...
T Consensus       112 ----~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          112 ----SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             ----HTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred             ----HcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence                88999999999999999999998877 9994431 566788899999877765443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.86  E-value=4.2e-22  Score=181.65  Aligned_cols=132  Identities=24%  Similarity=0.289  Sum_probs=119.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCC-------------CChHHHHHHHcCCHHHHHHHHH---CCCC
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-------------GETPLHMAAKNGCNEAAKLLLA---HGAF   66 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~-------------g~t~L~~A~~~g~~~~v~~Ll~---~g~~   66 (438)
                      .|+||||+||..|+.+++++|++    .|++++..|..             |+||||+|+..|+.+++++|++   +|++
T Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~  164 (256)
T 2etb_A           89 QGHSALHIAIEKRSLQCVKLLVE----NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS  164 (256)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence            59999999999999999999999    68899998876             9999999999999999999999   9999


Q ss_pred             cccccCCCCcHHHHHhhcccccCcHH-------HHHHHHhCCCCC-------cccCCCCCccccccccCCCchhHHHHHH
Q 013706           67 IEAKANNGMTPLHLSVWYSIRSEDYA-------TVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLL  132 (438)
Q Consensus        67 ~~~~~~~g~t~L~~A~~~~~~~~~~~-------~~~~Ll~~ga~~-------~~~d~~g~t~l~~~a~~~~~~~~~~lL~  132 (438)
                      +|.+|..|+||||+|+..  ..++.+       ++++|+++|+++       +.+|..|+||| +.|+..++.+++++|+
T Consensus       165 ~n~~d~~g~TpLh~A~~~--~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          165 LEATDSLGNTVLHALVMI--ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL-KLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             TTCCCTTSCCHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHHHHH
T ss_pred             cCccCCCCCCHHHHHHHc--ccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHH-HHHHHhCCHHHHHHHH
Confidence            999999999999999932  278888       999999999999       89999999999 6666678999999999


Q ss_pred             hccchHHHH
Q 013706          133 WHSEEQRKR  141 (438)
Q Consensus       133 ~~~~~~~~~  141 (438)
                      .++......
T Consensus       242 ~~g~~~~~~  250 (256)
T 2etb_A          242 QREFSGAAA  250 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             hCCCCCCCc
Confidence            887665443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=2.9e-22  Score=178.72  Aligned_cols=131  Identities=18%  Similarity=0.234  Sum_probs=111.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHC-CCCcccccCCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A   81 (438)
                      .|+||||+||..|+.+++++|++    .+++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLD----NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHh----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            57899999999999999999999    7889999999999999999999999999999998 999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                      +    ..|+.+++++|+++|++++.+|..|.||+ ++|+..+..++++.|...++.....+
T Consensus       148 ~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          148 A----WKGYADIVQLLLAKGARTDLRNIEKKLAF-DMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             H----HHTCHHHHHHHHHHTCCSCCCCTTSCCHH-HHCCSHHHHHHHC-------------
T ss_pred             H----HcCCHHHHHHHHHcCCCCccccCCCCCHH-HHhcchhHHHHHHHHhccchhhhccc
Confidence            9    88999999999999999999999999999 66666778888888887776655544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.1e-21  Score=149.45  Aligned_cols=93  Identities=47%  Similarity=0.656  Sum_probs=88.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      +|+||||+||..|+.+++++|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            58999999999999999999999    78999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCC
Q 013706           83 WYSIRSEDYATVKTLLEYNAD  103 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~  103 (438)
                          ..++.+++++|+++|++
T Consensus        77 ----~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           77 ----RNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             ----HTTCHHHHHHHHHTTCC
T ss_pred             ----HcCCHHHHHHHHHcCCC
Confidence                88999999999999875

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.86  E-value=9.4e-22  Score=180.35  Aligned_cols=209  Identities=16%  Similarity=0.167  Sum_probs=143.8

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|.+...+.+.+.+..+              ...+.+++|+||||||||++|+++++.+..    ...+++.++
T Consensus         3 ~~f~~~ig~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~GtGKt~la~~i~~~~~~----~~~~~~~v~   64 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLEQVSHL--------------APLDKPVLIIGERGTGKELIASRLHYLSSR----WQGPFISLN   64 (265)
T ss_dssp             -------CCCHHHHHHHHHHHHH--------------TTSCSCEEEECCTTSCHHHHHHHHHHTSTT----TTSCEEEEE
T ss_pred             cccccceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHhcCc----cCCCeEEEe
Confidence            36888999998888877765543              224578999999999999999999986532    234899999


Q ss_pred             cccccc-----cccccchHH-------HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-------
Q 013706          239 RTDLVG-----EFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------  299 (438)
Q Consensus       239 ~~~~~~-----~~~g~~~~~-------~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------  299 (438)
                      ++.+..     .++|.....       ....++.+.+++|||||+|.+.+.           ++..|+..++.       
T Consensus        65 ~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g  133 (265)
T 2bjv_A           65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVG  133 (265)
T ss_dssp             GGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCC
T ss_pred             cCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCC
Confidence            887532     234432111       123567788899999999999763           34677777764       


Q ss_pred             ------CCEEEEEecCChhHHHHh--hhCcCccCCCC-cceeCCCCCH--HHHHHHHHHHHhcccccccccccccccccc
Q 013706          300 ------GKVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCS  368 (438)
Q Consensus       300 ------~~v~vi~~~~~~~~~~~~--~~~p~l~~R~~-~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~  368 (438)
                            .++.+|++++.+....+.  ...++|.+||. ..|.+|+++.  +++..+++.++.+....   .+......++
T Consensus       134 ~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~---~~~~~~~~~~  210 (265)
T 2bjv_A          134 GSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE---IKLPLFPGFT  210 (265)
T ss_dssp             C--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCSSCCCBC
T ss_pred             CcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH---hCCCcccCcC
Confidence                  246788888776544321  12578888994 5788999875  78888888888765321   1222213678


Q ss_pred             HHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706          369 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      ++++..+..+.|      +||.|+++++++++...+.
T Consensus       211 ~~a~~~L~~~~~------~gn~reL~~~l~~~~~~~~  241 (265)
T 2bjv_A          211 ERARETLLNYRW------PGNIRELKNVVERSVYRHG  241 (265)
T ss_dssp             HHHHHHHHHSCC------TTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCC------CCCHHHHHHHHHHHHHhCC
Confidence            999999998888      9999999999999886653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.86  E-value=9e-22  Score=167.70  Aligned_cols=125  Identities=36%  Similarity=0.464  Sum_probs=117.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        45 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  120 (169)
T 2y1l_E           45 ASGWTPLHLAAFNGHLEIVEVLLK----NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA  120 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            468999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      +    ..++.+++++|+++|++++..|..|.||+ +.|...++.+++++|++.|
T Consensus       121 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          121 A----MFGHLEIVEVLLKNGADVNAQDKFGKTAF-DISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             H----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHTC-
T ss_pred             H----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHhCCHHHHHHHHHcC
Confidence            9    88999999999999999999999999999 6666678899999998654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.86  E-value=5.1e-22  Score=181.45  Aligned_cols=129  Identities=24%  Similarity=0.294  Sum_probs=117.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc--------------CCCChHHHHHHHcCCHHHHHHHHH---CCC
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--------------MYGETPLHMAAKNGCNEAAKLLLA---HGA   65 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d--------------~~g~t~L~~A~~~g~~~~v~~Ll~---~g~   65 (438)
                      .|+||||+||..|+.++|++|++    .|++++..+              ..|+||||+|+..|+.+++++|++   +|+
T Consensus        92 ~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  167 (260)
T 3jxi_A           92 RGQTALHIAIERRCKHYVELLVE----KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA  167 (260)
T ss_dssp             ESBCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh----CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence            69999999999999999999999    688999998              689999999999999999999999   999


Q ss_pred             CcccccCCCCcHHHHHhhcccccCc---------HHHHHHHHhCCCCC-------cccCCCCCccccccccCCCchhHHH
Q 013706           66 FIEAKANNGMTPLHLSVWYSIRSED---------YATVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRE  129 (438)
Q Consensus        66 ~~~~~~~~g~t~L~~A~~~~~~~~~---------~~~~~~Ll~~ga~~-------~~~d~~g~t~l~~~a~~~~~~~~~~  129 (438)
                      +++.+|..|+||||+|+    ..++         .+++++|+++|+++       +..|..|+||| +.|+..++.++++
T Consensus       168 ~~~~~d~~g~TpLh~A~----~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~~~~v~  242 (260)
T 3jxi_A          168 DLRRQDSRGNTVLHALV----AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL-MMAAKTGKIGIFQ  242 (260)
T ss_dssp             CTTCCCTTSCCHHHHHH----HHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHH
T ss_pred             CCcccCCCCCcHHHHHH----HhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH-HHHHHcCCHHHHH
Confidence            99999999999999999    4444         68999999999999       67999999999 6666688999999


Q ss_pred             HHHhccchHHH
Q 013706          130 LLLWHSEEQRK  140 (438)
Q Consensus       130 lL~~~~~~~~~  140 (438)
                      +|+.++.....
T Consensus       243 ~Ll~~g~~~~~  253 (260)
T 3jxi_A          243 HIIRREIADAA  253 (260)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHhCCCccc
Confidence            99988765443

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.86  E-value=3.6e-21  Score=181.82  Aligned_cols=187  Identities=19%  Similarity=0.237  Sum_probs=140.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|.+..++.+.+.+......           ...+.+++|+||||||||++|+++++.+..       +++.+++
T Consensus        10 ~~~~~ig~~~~~~~l~~~l~~~~~~-----------~~~~~~vll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~   71 (324)
T 1hqc_A           10 TLDEYIGQERLKQKLRVYLEAAKAR-----------KEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTSG   71 (324)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHHHHH-----------CSCCCCCEEECCTTCCCHHHHHHHHHHHTC-------CEEEECT
T ss_pred             cHHHhhCHHHHHHHHHHHHHHHHcc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence            5789999999999988876544211           135678999999999999999999998854       7777776


Q ss_pred             ccccccccccchHHHHHHHHH--ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------------
Q 013706          240 TDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------  300 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~--a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------  300 (438)
                      +.+..      ...+...|..  +.+++|||||+|.+.+..           .+.|+..+++.                 
T Consensus        72 ~~~~~------~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~-----------~~~L~~~l~~~~~~~v~~~~~~~~~~~~  134 (324)
T 1hqc_A           72 PAIEK------PGDLAAILANSLEEGDILFIDEIHRLSRQA-----------EEHLYPAMEDFVMDIVIGQGPAARTIRL  134 (324)
T ss_dssp             TTCCS------HHHHHHHHTTTCCTTCEEEETTTTSCCHHH-----------HHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred             cccCC------hHHHHHHHHHhccCCCEEEEECCcccccch-----------HHHHHHHHHhhhhHHhcccccccccccc
Confidence            65422      2344555655  567999999999997533           35666666542                 


Q ss_pred             ---CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH
Q 013706          301 ---KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  377 (438)
Q Consensus       301 ---~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (438)
                         .+++|++++....     .+++|++||+.++.|++|+.+++.+++..++.+..           ..++++++..+..
T Consensus       135 ~~~~~~~i~~t~~~~~-----~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-----------~~~~~~~~~~l~~  198 (324)
T 1hqc_A          135 ELPRFTLIGATTRPGL-----ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-----------VRITEEAALEIGR  198 (324)
T ss_dssp             ECCCCEEEEEESCCSS-----CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCccc-----CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH
Confidence               3677887766543     27899999988999999999999999999887642           2367778877777


Q ss_pred             HHhhHhhhccccccchHHHHHHHHHHh
Q 013706          378 KETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       378 ~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ++       +||.|.+.++++.+...+
T Consensus       199 ~~-------~G~~r~l~~~l~~~~~~a  218 (324)
T 1hqc_A          199 RS-------RGTMRVAKRLFRRVRDFA  218 (324)
T ss_dssp             HS-------CSCHHHHHHHHHHHTTTS
T ss_pred             Hc-------cCCHHHHHHHHHHHHHHH
Confidence            63       788999999988876544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.86  E-value=3.8e-21  Score=173.04  Aligned_cols=132  Identities=30%  Similarity=0.344  Sum_probs=98.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCC--CcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC-CCCcHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGND--KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLH   79 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~   79 (438)
                      .|+||||+||..|+.+++++|++++...  ...++..+..|+||||+|+..|+.+++++|+++|++++.++. .|.||||
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~  156 (236)
T 1ikn_D           77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH  156 (236)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHH
Confidence            5677777777777777777777732110  122566677788888888888888888888888888888876 7888888


Q ss_pred             HHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           80 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        80 ~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      +|+    ..++.+++++|+++|++++.+|..|+||+ +.|...++.+++++|+..+++..
T Consensus       157 ~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          157 LAV----DLQNPDLVSLLLKCGADVNRVTYQGYSPY-QLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HHH----HTTCHHHHHHHHTTTCCSCCCCTTCCCGG-GGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHH----HcCCHHHHHHHHHcCCCCCcccCCCCCHH-HHHHccCchHHHHHHHHcchhhh
Confidence            888    67788888888888888888888888888 55556777788888887776543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.86  E-value=1.6e-21  Score=165.36  Aligned_cols=131  Identities=30%  Similarity=0.349  Sum_probs=120.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.||||.|+..|+.++++.|++.   .+.+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            578999999999999999999985   56778888899999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                          ..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...+
T Consensus        84 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~  137 (165)
T 3twr_A           84 ----SYGHYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGKYEICKLLLQHGADPTKK  137 (165)
T ss_dssp             ----HTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ----HcCcHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCccc
Confidence                88999999999999999999999999999 6666678999999999888765443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.86  E-value=9e-22  Score=166.27  Aligned_cols=126  Identities=23%  Similarity=0.315  Sum_probs=116.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+. |+.+++++|++    .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        36 ~~g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  110 (162)
T 1ihb_A           36 GFGRTALQVMKL-GNPEIARRLLL----RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA  110 (162)
T ss_dssp             TTSCCHHHHCCS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCccHHHHHHc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            368999999999 99999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCC-CcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           82 VWYSIRSEDYATVKTLLEYNAD-CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~-~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      +    ..++.+++++|+++|++ ++..|..|+||+ +.|+..++.+++++|+.+|++
T Consensus       111 ~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          111 A----KEGHLRVVEFLVKHTASNVGHRNHKGDTAC-DLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             H----HTTCHHHHHHHHHHSCCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTC--
T ss_pred             H----HcCCHHHHHHHHHccCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHHhCCC
Confidence            9    88999999999999998 589999999999 666678899999999988764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.86  E-value=1.8e-21  Score=166.15  Aligned_cols=131  Identities=24%  Similarity=0.200  Sum_probs=116.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      ++.||||.|+..|+.++++.|++.   ....++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus         1 G~~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A            1 GDSLSIHQLAAQGELDQLKEHLRK---GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS   77 (172)
T ss_dssp             ---CCHHHHHHTTCHHHHHHHHTT---CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred             CchhhHHHHHHcCCHHHHHHHHHc---CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHH
Confidence            367999999999999999999983   23348999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                          ..++.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+++....
T Consensus        78 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~  131 (172)
T 3v30_A           78 ----TGGYTDIVGLLLERDVDINIYDWNGGTPL-LYAVRGNHVKCVEALLARGADLTTE  131 (172)
T ss_dssp             ----HTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ----HCCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCcccc
Confidence                88999999999999999999999999999 5566678899999999888765443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.86  E-value=2.1e-21  Score=167.05  Aligned_cols=131  Identities=25%  Similarity=0.327  Sum_probs=118.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .+.+|||.||..|+.++|++|++.   .+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDN---TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHC---TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhc---CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            578999999999999999999994   47789999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                          ..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++....
T Consensus        81 ----~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~  134 (179)
T 3f6q_A           81 ----SHGHRDIVQKLLQYKADINAVNEHGNVPL-HYACFWGQDQVAEDLVANGALVSIC  134 (179)
T ss_dssp             ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSSBC
T ss_pred             ----HcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCcchh
Confidence                88999999999999999999999999999 6666678899999999888775443

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.86  E-value=4.1e-22  Score=185.71  Aligned_cols=204  Identities=20%  Similarity=0.228  Sum_probs=149.2

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ++++|.+...+.+.+.+..+              +..+.++||+||||||||++|+++++.+.    ....+|+.++++.
T Consensus         2 ~~iig~s~~~~~~~~~~~~~--------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~----~~~~~~v~v~~~~   63 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMV--------------APSDATVLIHGDSGTGKELVARALHACSA----RSDRPLVTLNCAA   63 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHH--------------CSTTSCEEEESCTTSCHHHHHHHHHHHSS----CSSSCCCEEECSS
T ss_pred             CCcEECCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCchHHHHHHHHHHhCc----ccCCCeEEEeCCC
Confidence            35788888888887776544              24567899999999999999999998553    2345888898876


Q ss_pred             ccc-----cccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC---------
Q 013706          242 LVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------  300 (438)
Q Consensus       242 ~~~-----~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------  300 (438)
                      +..     .++|+..       ......|+.+.+++|||||||.+.+.           .+..|+..++++         
T Consensus        64 ~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~  132 (304)
T 1ojl_A           64 LNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPL-----------MQVRLLRAIQEREVQRVGSNQ  132 (304)
T ss_dssp             CCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHH-----------HHHHHHHHHHSSBCCBTTBCC
T ss_pred             CChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHH-----------HHHHHHHHHhcCEeeecCCcc
Confidence            533     3444421       12335678889999999999999763           447788888754         


Q ss_pred             ----CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706          301 ----KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA  371 (438)
Q Consensus       301 ----~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  371 (438)
                          ++.+|++|+.+....+..  -++.|..|| ...|.+|++.  .+++..++..++.+....   ++. -...+++++
T Consensus       133 ~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~---~~~-~~~~~s~~a  208 (304)
T 1ojl_A          133 TISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAER---NRK-VVKGFTPQA  208 (304)
T ss_dssp             CCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHH---TTC-CCCCBCHHH
T ss_pred             cccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHH---hcc-CccCCCHHH
Confidence                378888888764433311  246777888 5568899998  688999999888765321   111 124578899


Q ss_pred             HHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          372 IAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +..+..+.|      +||.|+++++++++...+
T Consensus       209 ~~~L~~~~w------pGnvReL~~~l~~~~~~~  235 (304)
T 1ojl_A          209 MDLLIHYDW------PGNIRELENAIERAVVLL  235 (304)
T ss_dssp             HHHHHHCCC------SSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCC------CCCHHHHHHHHHHHHHhC
Confidence            999999988      999999999999998765

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=4.6e-22  Score=171.84  Aligned_cols=108  Identities=27%  Similarity=0.395  Sum_probs=101.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A   81 (438)
                      .|+||||+||..|+.++++.|++     +.+++..|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            47899999999999999999997     56899999999999999999999999999999999999998 8999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS  119 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a  119 (438)
                      +    ..++.+++++|+++|++++.+|..|+||+++++
T Consensus       118 ~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~  151 (183)
T 3deo_A          118 A----GYVRPEVVEALVELGADIEVEDERGLTALELAR  151 (183)
T ss_dssp             H----HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             H----hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH
Confidence            9    889999999999999999999999999994443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.85  E-value=1.7e-21  Score=163.07  Aligned_cols=128  Identities=26%  Similarity=0.345  Sum_probs=116.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      ++.||||.|+..|+.+++++|++    .+.+++ .|..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+
T Consensus         1 d~~~~L~~A~~~g~~~~v~~Ll~----~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   75 (153)
T 1awc_B            1 DLGKKLLEAARAGQDDEVRILMA----NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH----HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred             CccHHHHHHHHcCCHHHHHHHHH----cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            35689999999999999999999    566666 5888999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                          ..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...
T Consensus        76 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~  128 (153)
T 1awc_B           76 ----SEGHANIVEVLLKHGADVNAKDMLKMTAL-HWATEHNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             ----HHTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             ----HcChHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccc
Confidence                88999999999999999999999999999 666667889999999988876543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.85  E-value=3.8e-21  Score=171.33  Aligned_cols=131  Identities=25%  Similarity=0.345  Sum_probs=109.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+..|+.+++++|+++   ...+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        56 ~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  132 (223)
T 2f8y_A           56 NMGRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA  132 (223)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHB---TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHH
Confidence            3688899999999999999999883   2337888888888999999998889999999998888888888889999988


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      +    ..++.+++++|+++|++++..|..|.||| +.|+..++.+++++|+..+++...
T Consensus       133 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          133 A----AVNNVDAAVVLLKNGANKDMQNNREETPL-FLAAREGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             H----HTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             H----HcCCHHHHHHHHHcCCCCCCcCCCCcCHH-HHHHHcCCHHHHHHHHHcCCCCcc
Confidence            8    77888888888888888888888899998 555567788888888887766543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.85  E-value=4.2e-21  Score=201.22  Aligned_cols=215  Identities=17%  Similarity=0.285  Sum_probs=155.0

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      +.++|++.+++.+.+.+....       .+......+..++||+||||||||++|+++|+.+...    ..+++.+++++
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~----~~~~i~i~~s~  559 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRAR-------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD----EESMIRIDMSE  559 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHT-------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC----TTCEEEEEGGG
T ss_pred             CcCcChHHHHHHHHHHHHHHH-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC----CcceEEEechh
Confidence            468899988888887655332       2222222233379999999999999999999988532    34899999999


Q ss_pred             ccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------------CEEEEEec
Q 013706          242 LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAG  308 (438)
Q Consensus       242 ~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~v~vi~~~  308 (438)
                      +...+... ...+...+....++||||||||++.+           .+++.|++.|+++             ++++|+++
T Consensus       560 ~~~~~~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt  627 (758)
T 3pxi_A          560 YMEKHSTS-GGQLTEKVRRKPYSVVLLDAIEKAHP-----------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS  627 (758)
T ss_dssp             GCSSCCCC----CHHHHHHCSSSEEEEECGGGSCH-----------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred             cccccccc-cchhhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence            88776654 33445667777889999999999876           5668899988763             35778887


Q ss_pred             CC-----hhHHHHh--hhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH--HH
Q 013706          309 YS-----EPMKRVI--ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE--KE  379 (438)
Q Consensus       309 ~~-----~~~~~~~--~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  379 (438)
                      +.     +.....+  ...|+|++||+.+|.|++|+.+++.+|+..++.+...+....  .....++++++..++.  +.
T Consensus       628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~~a~~~l~~~~~~  705 (758)
T 3pxi_A          628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQ--DLSIELTDAAKAKVAEEGVD  705 (758)
T ss_dssp             SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTT--TCEEEECHHHHHHHHGGGCC
T ss_pred             CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhC--CCeEEECHHHHHHHHHhCCC
Confidence            63     2221110  127999999999999999999999999999988764332211  2335678899999976  44


Q ss_pred             hhHhhhccccccchHHHHHHHHHHhhcc
Q 013706          380 TTEKQRREMNGGLVDPMLVNARENLDLR  407 (438)
Q Consensus       380 ~~~~~~~~~n~~~l~~~~~~a~~~~~~r  407 (438)
                      |      ++|+|.|++++++++.....+
T Consensus       706 ~------~~~~R~L~~~i~~~v~~~l~~  727 (758)
T 3pxi_A          706 L------EYGARPLRRAIQKHVEDRLSE  727 (758)
T ss_dssp             T------TTTTTTHHHHHHHHTHHHHHH
T ss_pred             C------CCCChHHHHHHHHHHHHHHHH
Confidence            5      899999999999988765443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.85  E-value=3.1e-21  Score=173.02  Aligned_cols=128  Identities=32%  Similarity=0.397  Sum_probs=106.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccc-----ccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC----
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-----EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN----   72 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----   72 (438)
                      ..|+||||+||..|+.+++++|++    .++++     +..|..|+||||+|+..|+.+++++|+++|++++..+.    
T Consensus        35 ~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  110 (232)
T 2rfa_A           35 AMGETALHIAALYDNLEAAMVLME----AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF  110 (232)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----cCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcce
Confidence            468999999999999999999998    45555     66778899999999999999999999999999888765    


Q ss_pred             ---------CCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHH----HHHHhccchH
Q 013706           73 ---------NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR----ELLLWHSEEQ  138 (438)
Q Consensus        73 ---------~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~----~lL~~~~~~~  138 (438)
                               .|.||||+|+    ..|+.+++++|+++|++++.+|..|+||| |.|+..++.+++    ++|+..+++.
T Consensus       111 ~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          111 HYRPHNLIYYGEHPLSFAA----CVGSEEIVRLLIEHGADIRAQDSLGNTVL-HILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             SCCTTCSCCCCSSHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             eecccccccCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCChHHHHHHHHHHHhcCCch
Confidence                     6899999998    78889999999999999999999999999 545556666665    7887776643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.85  E-value=1.2e-21  Score=180.44  Aligned_cols=125  Identities=28%  Similarity=0.363  Sum_probs=115.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccC--------------CCChHHHHHHHcCCHHHHHHHHH---CCC
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM--------------YGETPLHMAAKNGCNEAAKLLLA---HGA   65 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~--------------~g~t~L~~A~~~g~~~~v~~Ll~---~g~   65 (438)
                      .|+||||+||..|+.++|++|++    .|++++..+.              .|+||||+|+..|+.+++++|++   +|+
T Consensus       100 ~g~tpL~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  175 (273)
T 2pnn_A          100 KGQTALHIAIERRNMTLVTLLVE----NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA  175 (273)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence            69999999999999999999999    6889999887              79999999999999999999999   999


Q ss_pred             CcccccCCCCcHHHHHhhcccccCc---------HHHHHHHHhCCCCCc-------ccCCCCCccccccccCCCchhHHH
Q 013706           66 FIEAKANNGMTPLHLSVWYSIRSED---------YATVKTLLEYNADCS-------AKDNEGKTPLDHLSNGPGSAKLRE  129 (438)
Q Consensus        66 ~~~~~~~~g~t~L~~A~~~~~~~~~---------~~~~~~Ll~~ga~~~-------~~d~~g~t~l~~~a~~~~~~~~~~  129 (438)
                      +++.+|..|+||||+|+    ..++         .+++++|+++|++++       ..|..|+||| +.|+..++.++++
T Consensus       176 d~~~~d~~g~tpLh~A~----~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL-~~A~~~g~~~iv~  250 (273)
T 2pnn_A          176 DISARDSVGNTVLHALV----EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL-ALAASSGKIGVLA  250 (273)
T ss_dssp             CTTCCCTTSCCHHHHHH----HHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHH
T ss_pred             CceeeCCCCCcHHHHHH----HccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHH-HHHHHhChHHHHH
Confidence            99999999999999999    5565         789999999999996       5899999999 6666688999999


Q ss_pred             HHHhccc
Q 013706          130 LLLWHSE  136 (438)
Q Consensus       130 lL~~~~~  136 (438)
                      +|+..|+
T Consensus       251 ~Ll~~ga  257 (273)
T 2pnn_A          251 YILQREI  257 (273)
T ss_dssp             HHHHHHT
T ss_pred             HHHHCCC
Confidence            9998887

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.85  E-value=4.6e-21  Score=171.94  Aligned_cols=130  Identities=29%  Similarity=0.443  Sum_probs=118.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCc-----ccccCCCCcH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI-----EAKANNGMTP   77 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~g~t~   77 (438)
                      .|+||||+||..|+.+++++|++.   .+++++.+|..|+||||+|+..|+.+++++|+++|+++     +.+|..|.||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence            589999999999999999999983   48999999999999999999999999999999999987     6778899999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcccCC-------------CCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-------------EGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~-------------~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      ||+|+    ..|+.+++++|+++|++++..+.             .|+||| |.|+..++.+++++|+..+++...
T Consensus        79 L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~  149 (232)
T 2rfa_A           79 LHIAV----INQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEEIVRLLIEHGADIRA  149 (232)
T ss_dssp             HHHHH----HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHH----HcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCC
Confidence            99999    88999999999999999998866             799999 666667889999999988876543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.85  E-value=3.3e-21  Score=175.47  Aligned_cols=132  Identities=25%  Similarity=0.342  Sum_probs=113.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+..|+.+++++|+++   ...+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        88 ~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A  164 (253)
T 1yyh_A           88 NMGRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA  164 (253)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHS---TTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc---CCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            3688999999999999999999983   2337888888999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      +    ..|+.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...+
T Consensus       165 ~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~~  219 (253)
T 1yyh_A          165 A----AVNNVDAAVVLLKNGANKDMQNNREETPL-FLAAREGSYETAKVLLDHFANRDIT  219 (253)
T ss_dssp             H----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             H----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHCCCHHHHHHHHHcCCCcccc
Confidence            8    77889999999999999999999999999 5566677888899998888765443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.84  E-value=8.1e-21  Score=169.73  Aligned_cols=126  Identities=25%  Similarity=0.342  Sum_probs=74.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCC--cccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDK--VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   80 (438)
                      .|+||||+|+..|+.+++++|++    .+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        71 ~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  146 (228)
T 2dzn_A           71 SGWTPFHIACSVGNLEVVKSLYD----RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR  146 (228)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHS----SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh----CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHH
Confidence            45566666666666666666665    33  5555556666666666666666666666666666666666666666666


Q ss_pred             HhhcccccCcHHHHHHHHhCC-CCCcccCCCCCccccccccCCCchhHHHHHH-hccch
Q 013706           81 SVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNGPGSAKLRELLL-WHSEE  137 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~g-a~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~-~~~~~  137 (438)
                      |+    ..|+.+++++|++.| ++++..|..|+||| +.|+..++.+++++|+ ..+++
T Consensus       147 A~----~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~~ga~  200 (228)
T 2dzn_A          147 AA----SVGSLKLIELLCGLGKSAVNWQDKQGWTPL-FHALAEGHGDAAVLLVEKYGAE  200 (228)
T ss_dssp             HH----HTTCHHHHHHHHTTTCCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHCCC
T ss_pred             HH----HcCCHHHHHHHHhcCcccccCcCCCCCCHH-HHHHHcCCHHHHHHHHHhcCCC
Confidence            66    555666666666665 66666666666666 3333445555555555 44544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.84  E-value=5.7e-21  Score=176.33  Aligned_cols=134  Identities=30%  Similarity=0.349  Sum_probs=116.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCC-------------------------------------------CCcccccccC
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGN-------------------------------------------DKVELEAQNM   39 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~-------------------------------------------~~~~~~~~d~   39 (438)
                      .|+||||+|+..|+.+++++|++++..                                           .+.+++..|.
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY  156 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence            578888888888888888888874321                                           1234778899


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCcccccCC-CCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccccc
Q 013706           40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL  118 (438)
Q Consensus        40 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~  118 (438)
                      .|+||||+|+..|+.+++++|+++|++++.++.. |+||||+|+    ..|+.+++++|+++|++++.+|..|+||| +.
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~----~~~~~~~v~~Ll~~gad~~~~d~~g~tpL-~~  231 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV----EAQAASVLELLLKAGADPTARMYGGRTPL-GS  231 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HH
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHH----HcCCHHHHHHHHHcCCCCcccccCCCCHH-HH
Confidence            9999999999999999999999999999999854 999999999    88999999999999999999999999999 66


Q ss_pred             ccCCCchhHHHHHHhccchHHHH
Q 013706          119 SNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus       119 a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      |+..++.+++++|+.+|++...+
T Consensus       232 A~~~~~~~~v~~Ll~~ga~~~~~  254 (282)
T 1oy3_D          232 ALLRPNPILARLLRAHGAPEPED  254 (282)
T ss_dssp             HHTSSCHHHHHHHHHTTCCCCCC
T ss_pred             HHHcCCcHHHHHHHHcCCCcCcC
Confidence            66678999999999998875543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.84  E-value=5.5e-21  Score=171.22  Aligned_cols=130  Identities=33%  Similarity=0.431  Sum_probs=120.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+..|+.+++++|++    .+++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus        71 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  146 (231)
T 3aji_A           71 DAGWSPLHIAASAGXDEIVKALLV----KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA  146 (231)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCHHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            368999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      +    ..|+.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...
T Consensus       147 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~  200 (231)
T 3aji_A          147 A----AKGNLKMVHILLFYKASTNIQDTEGNTPL-HLACDEERVEEAKFLVTQGASIYI  200 (231)
T ss_dssp             H----HHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             H----HcCCHHHHHHHHhcCCCccccCCCCCCHH-HHHHHCCCHHHHHHHHHCCCCCCC
Confidence            9    88999999999999999999999999999 666667889999999988876543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.84  E-value=7.7e-21  Score=170.27  Aligned_cols=129  Identities=33%  Similarity=0.453  Sum_probs=120.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus        38 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  113 (231)
T 3aji_A           38 QDSRTALHWACSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA  113 (231)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHH----hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            479999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      +    ..++.+++++|+++|++++..|..|.||| +.|+..++.+++++|+..+.+..
T Consensus       114 ~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~  166 (231)
T 3aji_A          114 A----SKNRHEIAVMLLEGGANPDAKDHYDATAM-HRAAAKGNLKMVHILLFYKASTN  166 (231)
T ss_dssp             H----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             H----HcCCHHHHHHHHHcCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHhcCCCcc
Confidence            9    88999999999999999999999999999 55656788899999998876543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.84  E-value=4.5e-21  Score=184.19  Aligned_cols=130  Identities=25%  Similarity=0.253  Sum_probs=122.0

Q ss_pred             CCCcHHHHHHHcC--CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCC-----cccccCCCC
Q 013706            3 MAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF-----IEAKANNGM   75 (438)
Q Consensus         3 ~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~   75 (438)
                      .|+||||+|+..|  +.++|++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++     ++.+|..|+
T Consensus       137 ~g~t~L~~A~~~g~~~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          137 KGQTALHWCVGLGPEYLEMIKILVQ----LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             SCCCHHHHHHHSCGGGHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             CCCCHHHHHHHcCCchHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence            5899999999999  9999999999    6899999999999999999999999999999999999     999999999


Q ss_pred             cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      ||||+|+    ..|+.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..++.....
T Consensus       213 t~L~~A~----~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~~~~~~~~  273 (364)
T 3ljn_A          213 SHLHWAI----LINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQKTDVFLIQ  273 (364)
T ss_dssp             CTTHHHH----TTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHHSCHHHHH
T ss_pred             cHHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHcCCchhhh
Confidence            9999999    88999999999999999999999999999 6666688999999999988776443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.84  E-value=5.4e-21  Score=167.47  Aligned_cols=131  Identities=22%  Similarity=0.289  Sum_probs=118.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHH-HCCCCcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL-AHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~   80 (438)
                      ..|+||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|+ ..+++++..+..|.||||+
T Consensus        37 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~  112 (201)
T 3hra_A           37 TEGNTPLNIAVHNNDIEIAKALID----RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP  112 (201)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHH
Confidence            478999999999999999999999    78999999999999999999999999999999 6778999999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCC-CCCcccCCCCCccccccccCCCc-----hhHHHHHHhccchHHHH
Q 013706           81 SVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNGPGS-----AKLRELLLWHSEEQRKR  141 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~g-a~~~~~d~~g~t~l~~~a~~~~~-----~~~~~lL~~~~~~~~~~  141 (438)
                      |+    ..++.+++++|+++| ++++..|..|+||||+++. .+.     .+++++|+..+++...+
T Consensus       113 A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~~~v~~Ll~~ga~~~~~  174 (201)
T 3hra_A          113 AA----EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG-LREGNQLYQDIVKLLMENGADQSIK  174 (201)
T ss_dssp             HH----HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH-SSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred             HH----HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH-hccchhhHHHHHHHHHHCCCCCCcc
Confidence            99    889999999999998 9999999999999955554 444     78999999888776544

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.84  E-value=7.6e-21  Score=175.38  Aligned_cols=123  Identities=28%  Similarity=0.380  Sum_probs=73.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCc-ccccccCCCChHHHHHH-----HcCCHHHHHHHHHCCCCcccccCCCC
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV-ELEAQNMYGETPLHMAA-----KNGCNEAAKLLLAHGAFIEAKANNGM   75 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~g~   75 (438)
                      ..|+||||+||..|+.++|++|++    .|+ +++..|..|+||||+|+     ..++.+++++|++.|.+++..+..|+
T Consensus       109 ~~g~T~Lh~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~  184 (276)
T 4hbd_A          109 SNGNTALHYSVSHANFPVVQQLLD----SGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQ  184 (276)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH----TSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHH----CCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCC
Confidence            479999999999999999999999    454 56666655555555555     33445555555555555555555555


Q ss_pred             cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706           76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW  133 (438)
Q Consensus        76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~  133 (438)
                      ||||+|+    ..|+.+++++|+++|++++..|.+|+||| +.|+..++.+++++|+.
T Consensus       185 tpLh~A~----~~g~~~~v~~Ll~~gad~n~~d~~G~TpL-h~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          185 TALMLAV----SHGRVDVVKALLACEADVNVQDDDGSTAL-MCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             CHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHT
T ss_pred             CHHHHHH----HcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHHHh
Confidence            5555555    44455555555555555555555555555 33333444445555544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.84  E-value=6.5e-21  Score=171.50  Aligned_cols=129  Identities=32%  Similarity=0.475  Sum_probs=113.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCC------cccccCCCCc
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF------IEAKANNGMT   76 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t   76 (438)
                      .|+||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|++.|++      ++..+..|.|
T Consensus        44 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  119 (236)
T 1ikn_D           44 LQQTPLHLAVITNQPEIAEALLG----AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT  119 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHCCCS----CCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCC
Confidence            58899999999999999999998    6888999999999999999999999999999999876      5677888999


Q ss_pred             HHHHHhhcccccCcHHHHHHHHhCCCCCcccCC-CCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           77 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~-~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      |||+|+    ..|+.+++++|+++|++++..+. .|+||| |.|+..++.+++++|+..|++...
T Consensus       120 ~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~  179 (236)
T 1ikn_D          120 CLHLAS----IHGYLGIVELLVSLGADVNAQEPCNGRTAL-HLAVDLQNPDLVSLLLKCGADVNR  179 (236)
T ss_dssp             HHHHHH----HTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHHTTTCCSCC
T ss_pred             HHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCc
Confidence            999999    78899999999999999999987 999999 556667888999999988876543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=3.6e-21  Score=174.20  Aligned_cols=108  Identities=27%  Similarity=0.395  Sum_probs=101.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A   81 (438)
                      .|+||||+||..|+.++++.|++     ++++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            47899999999999999999997     56899999999999999999999999999999999999998 8899999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS  119 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a  119 (438)
                      +    ..|+.+++++|+++|++++..|..|+||||+++
T Consensus       119 ~----~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A          119 A----GYVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             H----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             H----HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            9    889999999999999999999999999995554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.84  E-value=5.5e-21  Score=174.00  Aligned_cols=130  Identities=28%  Similarity=0.443  Sum_probs=120.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCC-CcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA-FIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~   80 (438)
                      ..|+||||+||..|+.++|++|++    .|++++..|..|+||||+|+..|+.+++++|+++++ +++.++..|.||||+
T Consensus        55 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~  130 (253)
T 1yyh_A           55 RTGETALHLAARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL  130 (253)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHH
Confidence            379999999999999999999999    789999999999999999999999999999999987 899999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      |+    ..++.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+++...
T Consensus       131 A~----~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~  185 (253)
T 1yyh_A          131 AA----RLAVEGMLEDLINSHADVNAVDDLGKSAL-HWAAAVNNVDAAVVLLKNGANKDM  185 (253)
T ss_dssp             HH----HHTCSSHHHHHHHTTCCTTCBCTTSCBHH-HHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HH----HcChHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99    78899999999999999999999999999 556667889999999988876543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=4.9e-21  Score=152.04  Aligned_cols=106  Identities=40%  Similarity=0.507  Sum_probs=99.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.+++++|++    .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus         7 ~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CSSCCHHHHHHHHTCHHHHHHHTT----TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            479999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL  115 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l  115 (438)
                      +    ..++.+++++|+++|++++..+..|.+|-
T Consensus        83 ~----~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           83 K----KNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             H----TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             H----HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9    88999999999999999999999999885

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.84  E-value=1.3e-20  Score=165.06  Aligned_cols=125  Identities=22%  Similarity=0.229  Sum_probs=115.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .+.||||.|+..|+.++++.|+..   .+.+++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQD---TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG   80 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTC---TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHc---CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            689999999999999999999984   45589999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHH-hCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           83 WYSIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll-~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                          ..++.+++++|+ ..+++++..|..|.||| +.|+..++.+++++|+..+
T Consensus        81 ----~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g  129 (201)
T 3hra_A           81 ----AQGRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDG  129 (201)
T ss_dssp             ----HTTCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHC
T ss_pred             ----HcCCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcC
Confidence                889999999999 56889999999999999 6666678889999999877

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.84  E-value=1.1e-20  Score=170.35  Aligned_cols=135  Identities=29%  Similarity=0.445  Sum_probs=113.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~   80 (438)
                      ..|+||||+|+..|+.+++++|+++....+.+++..|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+
T Consensus        77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~  156 (241)
T 1k1a_A           77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH  156 (241)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHH
Confidence            3688999999999999999999985333344788888899999999999999999999999999998888 789999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      |+    ..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...+
T Consensus       157 A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~  212 (241)
T 1k1a_A          157 AV----ENNSLSMVQLLLQHGANVNAQMYSGSSAL-HSASGRGLLPLVRTLVRSGADSSLK  212 (241)
T ss_dssp             HH----HTTCHHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHhcCCCCCCc
Confidence            98    78889999999999999999999999999 5555677888888888888775544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.84  E-value=1.2e-20  Score=175.89  Aligned_cols=131  Identities=27%  Similarity=0.341  Sum_probs=113.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCC--------
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN--------   73 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--------   73 (438)
                      ..|+||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++..+..        
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  146 (299)
T 1s70_B           71 VDGLTALHQACIDDNVDMVKFLVE----NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA  146 (299)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            368999999999999999999999    68899999999999999999999999999999999988876654        


Q ss_pred             ----------------------------------------------------CCcHHHHHhhcccccCcHHHHHHHHhCC
Q 013706           74 ----------------------------------------------------GMTPLHLSVWYSIRSEDYATVKTLLEYN  101 (438)
Q Consensus        74 ----------------------------------------------------g~t~L~~A~~~~~~~~~~~~~~~Ll~~g  101 (438)
                                                                          |.||||+|+    ..|+.+++++|+++|
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~g  222 (299)
T 1s70_B          147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA----AKGYTEVLKLLIQAR  222 (299)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHH----HHTCHHHHHHHHTTT
T ss_pred             HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHH----HCCcHHHHHHHHHcC
Confidence                                                                456666666    678899999999999


Q ss_pred             CCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706          102 ADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus       102 a~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      ++++..|..|+||| |.|+..++.+++++|+..+++....
T Consensus       223 ~d~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~gad~~~~  261 (299)
T 1s70_B          223 YDVNIKDYDGWTPL-HAAAHWGKEEACRILVENLCDMEAV  261 (299)
T ss_dssp             CCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCCCcCCCCCcHH-HHHHhcCCHHHHHHHHHcCCCCCCc
Confidence            99999999999999 6666678889999999888775543

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.83  E-value=9.2e-21  Score=198.96  Aligned_cols=210  Identities=17%  Similarity=0.232  Sum_probs=152.3

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ..++|++.+++.+...+...       ..+......+..++||+||||||||++|+++|+.++.       +++.+++++
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~-------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~-------~~~~i~~s~  523 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMA-------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------ELLRFDMSE  523 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHH-------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-------EEEEEEGGG
T ss_pred             hhccCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-------CEEEEechh
Confidence            34778888888777654322       2233222334457999999999999999999998853       788888877


Q ss_pred             cccc------------ccccc-hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------
Q 013706          242 LVGE------------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------  300 (438)
Q Consensus       242 ~~~~------------~~g~~-~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------  300 (438)
                      +...            |+|.. ...+...+..+.++||||||||++.+           ++++.|++.|+++        
T Consensus       524 ~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~~~~~~~~g~  592 (758)
T 1r6b_X          524 YMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDNGTLTDNNGR  592 (758)
T ss_dssp             CSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTTE
T ss_pred             hcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCH-----------HHHHHHHHHhcCcEEEcCCCC
Confidence            5432            33332 22356777888899999999999875           5679999999864        


Q ss_pred             -----CEEEEEecCChhHH-------------------HH-hhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706          301 -----KVVVIFAGYSEPMK-------------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED  355 (438)
Q Consensus       301 -----~v~vi~~~~~~~~~-------------------~~-~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~  355 (438)
                           ++++|++++.....                   .+ -...|+|++||+.+|.|++|+.+++..|++.++.+...+
T Consensus       593 ~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~  672 (758)
T 1r6b_X          593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQ  672 (758)
T ss_dssp             EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence                 35688887652200                   00 023799999999999999999999999999999865432


Q ss_pred             cccccccccccccHHHHHHHHHHHhhHhhhcccc--ccchHHHHHHHHHHh
Q 013706          356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN--GGLVDPMLVNARENL  404 (438)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n--~~~l~~~~~~a~~~~  404 (438)
                      ....  .+...++++++..+..+.|      ++|  +|.+++++++++...
T Consensus       673 ~~~~--~~~~~~~~~a~~~l~~~~~------~~~~g~R~l~~~i~~~~~~~  715 (758)
T 1r6b_X          673 LDQK--GVSLEVSQEARNWLAEKGY------DRAMGARPMARVIQDNLKKP  715 (758)
T ss_dssp             HHHT--TEEEEECHHHHHHHHHHHC------BTTTBTTTHHHHHHHHHTHH
T ss_pred             HHHC--CcEEEeCHHHHHHHHHhCC------CcCCCchHHHHHHHHHHHHH
Confidence            1111  2234678999999999887      555  899999999998763

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.83  E-value=7.5e-21  Score=159.55  Aligned_cols=122  Identities=30%  Similarity=0.473  Sum_probs=114.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+ |..|+.+++++|++    .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        34 ~~g~t~L~~-~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (156)
T 1bd8_A           34 RFGKTALQV-MMFGSTAIALELLK----QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA  108 (156)
T ss_dssp             TTSCCHHHH-SCTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCCcHHHH-HHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            369999999 99999999999999    6899999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                      +    ..|+.+++++|++. ++++..|..|.||+ +.|+..++.+++++|+.+
T Consensus       109 ~----~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l-~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          109 V----QEGHTAVVSFLAAE-SDLHRRDARGLTPL-ELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             H----HHTCHHHHHHHHTT-SCTTCCCTTSCCHH-HHHHHSCCHHHHHHHHTT
T ss_pred             H----HhChHHHHHHHHhc-cCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHhh
Confidence            9    88999999999999 99999999999999 666667888999998753

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.83  E-value=1.7e-20  Score=167.11  Aligned_cols=130  Identities=28%  Similarity=0.443  Sum_probs=119.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCC-CcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA-FIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~   80 (438)
                      ..|+||||+||..|+.+++++|++    .+++++..|..|+||||+|+..|+.+++++|++.++ +++..+..|.||||+
T Consensus        23 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   98 (223)
T 2f8y_A           23 RTGETALHLAARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL   98 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHH
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHH
Confidence            379999999999999999999999    688999999999999999999999999999999987 899999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      |+    ..++.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+.+...
T Consensus        99 A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~  153 (223)
T 2f8y_A           99 AA----RLAVEGMLEDLINSHADVNAVDDLGKSAL-HWAAAVNNVDAAVVLLKNGANKDM  153 (223)
T ss_dssp             HH----HHTCHHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HH----HhCcHHHHHHHHHcCCCCcCcCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99    88999999999999999999999999999 556667889999999988766543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.83  E-value=8.7e-21  Score=175.09  Aligned_cols=130  Identities=28%  Similarity=0.324  Sum_probs=116.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcc---cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE---LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      ..|+||||+||..|+.++|++|++    .+++   ++.+|..|+||||+|+..|+.+++++|+++|++++.++..|+|||
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            7 EDGDTALHLAVIHQHEPFLDFLLG----FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHh----cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            479999999999999999999998    4555   889999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccCcHHHHHHHHhCCCC-----------------------------------------------CcccCCCC
Q 013706           79 HLSVWYSIRSEDYATVKTLLEYNAD-----------------------------------------------CSAKDNEG  111 (438)
Q Consensus        79 ~~A~~~~~~~~~~~~~~~Ll~~ga~-----------------------------------------------~~~~d~~g  111 (438)
                      |+|+    ..++.+++++|++++++                                               ++..|..|
T Consensus        83 ~~A~----~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           83 HLAC----RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             HHHT----TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             HHHH----HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            9999    88999999999988765                                               66788899


Q ss_pred             CccccccccCCCchhHHHHHHhccchHHH
Q 013706          112 KTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus       112 ~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      +||| |.|+..++.+++++|+..+++...
T Consensus       159 ~t~L-~~A~~~g~~~~v~~Ll~~g~~~~~  186 (282)
T 1oy3_D          159 HTPL-HVAVIHKDAEMVRLLRDAGADLNK  186 (282)
T ss_dssp             CCHH-HHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred             cCHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999 666667889999999988776543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.83  E-value=5.1e-21  Score=174.42  Aligned_cols=129  Identities=25%  Similarity=0.279  Sum_probs=113.8

Q ss_pred             CCCCcHHHHHHHc---CCHHHHHHHhcCCCCCCccccc-----------ccCCCChHHHHHHHcCCHHHHHHHHHCCCCc
Q 013706            2 QMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEA-----------QNMYGETPLHMAAKNGCNEAAKLLLAHGAFI   67 (438)
Q Consensus         2 ~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~-----------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~   67 (438)
                      ..|+||||+||..   |+.+++++|++    .|++++.           .|..|+||||+|+..|+.+++++|+++|+++
T Consensus        41 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  116 (256)
T 2etb_A           41 STGKTCLMKAVLNLQDGVNACIMPLLQ----IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV  116 (256)
T ss_dssp             TTTBCHHHHHHHTCBTTBCTTHHHHHH----HHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCCCHHHHHHHccccchHHHHHHHHh----cCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3799999999999   99999999998    5665553           3467999999999999999999999999999


Q ss_pred             ccccCC-------------CCcHHHHHhhcccccCcHHHHHHHHh---CCCCCcccCCCCCcccccccc-CCCchh----
Q 013706           68 EAKANN-------------GMTPLHLSVWYSIRSEDYATVKTLLE---YNADCSAKDNEGKTPLDHLSN-GPGSAK----  126 (438)
Q Consensus        68 ~~~~~~-------------g~t~L~~A~~~~~~~~~~~~~~~Ll~---~ga~~~~~d~~g~t~l~~~a~-~~~~~~----  126 (438)
                      +.++..             |.||||+|+    ..|+.+++++|++   +|++++.+|..|+||||+++. ..+..+    
T Consensus       117 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~  192 (256)
T 2etb_A          117 HLRACGRFFQKHQGTCFYFGELPLSLAA----CTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSAL  192 (256)
T ss_dssp             TCCCCSGGGSCCSSSCCCSCSSHHHHHH----HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHH
T ss_pred             CcccccccccccccccccCCCCHHHHHH----HcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHH
Confidence            999886             999999999    8899999999999   999999999999999955553 256666    


Q ss_pred             ---HHHHHHhccchH
Q 013706          127 ---LRELLLWHSEEQ  138 (438)
Q Consensus       127 ---~~~lL~~~~~~~  138 (438)
                         ++++|+..+++.
T Consensus       193 ~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          193 VIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCc
Confidence               899999888765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.83  E-value=6.3e-21  Score=176.78  Aligned_cols=126  Identities=21%  Similarity=0.154  Sum_probs=116.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.++|++|++    .|++++..|  |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  102 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLN----AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA  102 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH----TTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Confidence            479999999999999999999999    688888874  89999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCC-CccccccccCCCchhHHHHHHhccchH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEG-KTPLDHLSNGPGSAKLRELLLWHSEEQ  138 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g-~t~l~~~a~~~~~~~~~~lL~~~~~~~  138 (438)
                      +    ..|+.+++++|+++|++++..|..| .||| +.|+..++.+++++|+..+...
T Consensus       103 ~----~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L-~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A          103 V----DSGNMQTVKLFVKKNWRLMFYGKTGWKTSF-YHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             H----HTTCHHHHHHHHHHCGGGGGCSSSGGGSHH-HHHHHTTCHHHHHHHHTTSCTT
T ss_pred             H----HcCCHHHHHHHHhcCCCCCccCCCCCCCHH-HHHHHcCCHHHHHHHHhCCCcc
Confidence            9    8899999999999999999999999 7999 6666678899999999887654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.82  E-value=4e-20  Score=166.56  Aligned_cols=130  Identities=31%  Similarity=0.414  Sum_probs=118.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCC----CcccccCCCCcH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA----FIEAKANNGMTP   77 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~   77 (438)
                      ..|+||||+|+..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|++.++    +++..+..|.||
T Consensus        44 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~  119 (241)
T 1k1a_A           44 NLRQTPLHLAVITTLPSVVRLLVT----AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA  119 (241)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcH
Confidence            368999999999999999999999    688999999999999999999999999999999987    889999999999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcccC-CCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d-~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      ||+|+    ..++.+++++|++.|++++..+ ..|.||| +.|+..++.+++++|+..+.+...
T Consensus       120 L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~  178 (241)
T 1k1a_A          120 LHVAV----NTECQETVQLLLERGADIDAVDIKSGRSPL-IHAVENNSLSMVQLLLQHGANVNA  178 (241)
T ss_dssp             HHHHH----HHTCHHHHHHHHHTTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHH----HcCCHHHHHHHHHcCCCcccccccCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999    8899999999999999999988 8899999 666667888999999988776543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.82  E-value=3.7e-20  Score=171.63  Aligned_cols=128  Identities=21%  Similarity=0.260  Sum_probs=116.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.+++++|++    .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        57 ~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A  132 (285)
T 3d9h_A           57 VSDWSPMHEAAIHGHQLSLRNLIS----QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA  132 (285)
T ss_dssp             CCSCCHHHHHHHTTCHHHHHHHHH----TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            368999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      +    ..|+.+++++|+++|++++..+ .|.||| +.|+..++.+++++|+..+.+..
T Consensus       133 ~----~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L-~~A~~~g~~~~v~~Ll~~g~~~~  184 (285)
T 3d9h_A          133 C----VSGSWDCVNLLLQHGASVQPES-DLASPI-HEAARRGHVECVNSLIAYGGNID  184 (285)
T ss_dssp             H----HHTCHHHHHHHHHTTCCSSCSC-TTSCHH-HHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             H----HcCHHHHHHHHHHCCCCCCCCC-CCCCHH-HHHHHcCCHHHHHHHHHCCCCCC
Confidence            9    8899999999999999998654 599999 66666788899999998876643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.82  E-value=5.4e-20  Score=164.34  Aligned_cols=124  Identities=33%  Similarity=0.404  Sum_probs=91.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCC--ccccc-ccCCCChHHHHHHHcCCHHHHHHHHHCC--CCcccccCCCCcH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDK--VELEA-QNMYGETPLHMAAKNGCNEAAKLLLAHG--AFIEAKANNGMTP   77 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~   77 (438)
                      .|+||||+|+..|+.+++++|++    .+  .+++. .+..|+||||+|+..|+.+++++|+++|  ++++.++..|.||
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~  110 (228)
T 2dzn_A           35 DGRIPLHWSVSFQAHEITSFLLS----KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC  110 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHH----TCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh----ccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCH
Confidence            57777777777777777777777    34  45555 6677777777777777777777777777  7777777777777


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      ||+|+    ..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+
T Consensus       111 L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A          111 LHLAV----GKKWFEVSQFLIENGASVRIKDKFNQIPL-HRAASVGSLKLIELLCGLG  163 (228)
T ss_dssp             HHHHH----HTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHH----HcCCHhHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHHhcC
Confidence            77777    66777777777777777777777777777 4444566777777777665

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.82  E-value=7e-20  Score=169.73  Aligned_cols=125  Identities=29%  Similarity=0.334  Sum_probs=69.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|+||||+|+..|+.+++++|++    .+++++.. ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus       124 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~  198 (285)
T 3d9h_A          124 DWHTPLFNACVSGSWDCVNLLLQ----HGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC  198 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHH----TTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHH----CCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            45566666666666666666665    34444432 23555666665555555555555555555555555555555555


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ  138 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~  138 (438)
                          ..++.+++++|++.|++++. |..|+||| +.|+..++.+++++|+..+++.
T Consensus       199 ----~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L-~~A~~~~~~~~v~~Ll~~gad~  248 (285)
T 3d9h_A          199 ----ENQQRACVKKLLESGADVNQ-GKGQDSPL-HAVVRTASEELACLLMDFGADT  248 (285)
T ss_dssp             ----HTTCHHHHHHHHHTTCCTTC-CBTTBCHH-HHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ----HcCcHHHHHHHHHCCCCCCC-CCCCCCHH-HHHHHcCCHHHHHHHHHCCCCC
Confidence                55555555555555555553 55555555 3333445555555555555443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.82  E-value=6e-20  Score=165.14  Aligned_cols=126  Identities=26%  Similarity=0.307  Sum_probs=66.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW   83 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   83 (438)
                      |.||||+|+..|+.+++++|+++   .+.+++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+ 
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~-  152 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSN---GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA-  152 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTT---TCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhC---CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH-
Confidence            44555555555555555555542   11445555555555555555555555555555555555555555555555555 


Q ss_pred             cccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           84 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        84 ~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                         ..|+.+++++|+++|++++..|..|.||| +.|...+..+++++|+..+++
T Consensus       153 ---~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~gad  202 (237)
T 3b7b_A          153 ---FSGCVDIAEILLAAKCDLHAVNIHGDSPL-HIAARENRYDCVVLFLSRDSD  202 (237)
T ss_dssp             ---HHCCHHHHHHHHTTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHTTTCC
T ss_pred             ---HCCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHhCCHhHHHHHHHcCCC
Confidence               44555555555555555555555555555 333334455555555555444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.82  E-value=1.7e-20  Score=172.73  Aligned_cols=128  Identities=28%  Similarity=0.324  Sum_probs=111.4

Q ss_pred             CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcc-------ccc----ccCCCChHHHHHHHcCCHHHHHHHHHCCCCcc
Q 013706            3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVE-------LEA----QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE   68 (438)
Q Consensus         3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~-------~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   68 (438)
                      .|+||||+||..   |+.++|++|++    .|++       ++.    .|..|+||||+|+..|+.+++++|+++|++++
T Consensus        53 ~g~tpL~~A~~~~~~g~~~~v~~Ll~----~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  128 (273)
T 2pnn_A           53 TGKTCLLKAMLNLHNGQNDTIALLLD----VARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ  128 (273)
T ss_dssp             TCCCHHHHHHHSCBTTBCHHHHHHHH----HHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCCCHHHHHHHHHhcCChHHHHHHHH----hhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            799999999987   99999999999    4443       232    56789999999999999999999999999999


Q ss_pred             cccC--------------CCCcHHHHHhhcccccCcHHHHHHHHh---CCCCCcccCCCCCccccccccCCCc-------
Q 013706           69 AKAN--------------NGMTPLHLSVWYSIRSEDYATVKTLLE---YNADCSAKDNEGKTPLDHLSNGPGS-------  124 (438)
Q Consensus        69 ~~~~--------------~g~t~L~~A~~~~~~~~~~~~~~~Ll~---~ga~~~~~d~~g~t~l~~~a~~~~~-------  124 (438)
                      .++.              .|.||||+|+    ..|+.+++++|++   +|++++.+|..|+||||+++. .++       
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~-~~~~~~~~~~  203 (273)
T 2pnn_A          129 AAANGDFFKKTKGRPGFYFGELPLSLAA----CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE-VADNTVDNTK  203 (273)
T ss_dssp             CCBCSGGGSSCSSSCCCCSCBSHHHHHH----HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH-HCCSCHHHHH
T ss_pred             ccccccccccccccccccCCCCHHHHHH----HcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHH-ccCcchhHHH
Confidence            9987              7999999999    8899999999999   999999999999999955554 333       


Q ss_pred             --hhHHHHHHhccchHH
Q 013706          125 --AKLRELLLWHSEEQR  139 (438)
Q Consensus       125 --~~~~~lL~~~~~~~~  139 (438)
                        .+++++|+..+++..
T Consensus       204 ~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          204 FVTSMYNEILILGAKLH  220 (273)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhcc
Confidence              578888888776653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.82  E-value=5.9e-20  Score=165.19  Aligned_cols=129  Identities=29%  Similarity=0.426  Sum_probs=120.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      +.|+||||+||..|+.+++++|++    .|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus         9 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   84 (237)
T 3b7b_A            9 QNKRSPLHAAAEAGHVDICHMLVQ----AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA   84 (237)
T ss_dssp             CCSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHH----cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Confidence            479999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCC-CCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           82 VWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~g-a~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                      +    ..|+.+++++|++.+ ++++..+..|+||+ +.++..++.+++++|+..+.+..
T Consensus        85 ~----~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~  138 (237)
T 3b7b_A           85 A----KKGHYEVVQYLLSNGQMDVNCQDDGGWTPM-IWATEYKHVDLVKLLLSKGSDIN  138 (237)
T ss_dssp             H----HTTCHHHHHHHHTTTCCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             H----HcCCHHHHHHHHhCCCCCcccCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCC
Confidence            9    889999999999998 89999999999999 66666788999999998876643

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.82  E-value=2.4e-19  Score=189.93  Aligned_cols=219  Identities=17%  Similarity=0.274  Sum_probs=154.7

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  240 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  240 (438)
                      +++++|++.+++.+...+....       .+......+..++||+||||||||++|+++|+.+...    ..+++.++++
T Consensus       557 ~~~viG~~~a~~~l~~~i~~~~-------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~----~~~~i~i~~~  625 (854)
T 1qvr_A          557 HKRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMIRIDMT  625 (854)
T ss_dssp             HHHSCSCHHHHHHHHHHHHHHG-------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS----GGGEEEECTT
T ss_pred             hcccCCcHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC----CCcEEEEech
Confidence            3678999988888887654332       1111122233589999999999999999999988531    2378888887


Q ss_pred             ccccc------------ccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706          241 DLVGE------------FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  300 (438)
Q Consensus       241 ~~~~~------------~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  300 (438)
                      .+...            |+|... ..+...+....++||||||++.+.+           .+++.|++.|+++       
T Consensus       626 ~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~g  694 (854)
T 1qvr_A          626 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRLTDSHG  694 (854)
T ss_dssp             TCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEECCSSS
T ss_pred             hccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCH-----------HHHHHHHHHhccCceECCCC
Confidence            65432            345443 4566677777889999999999875           6679999999865       


Q ss_pred             ------CEEEEEecCChh---------------HHHHh------hhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccc
Q 013706          301 ------KVVVIFAGYSEP---------------MKRVI------ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       301 ------~v~vi~~~~~~~---------------~~~~~------~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                            ++++|++++...               +...+      ...|+|++||+.++.|++|+.+++..|+..++.+..
T Consensus       695 ~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~  774 (854)
T 1qvr_A          695 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLR  774 (854)
T ss_dssp             CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence                  456888877521               11111      125889999999999999999999999999998654


Q ss_pred             cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhcc
Q 013706          354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR  407 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r  407 (438)
                      .+....  .+...++++++..+..+.|    ..+||+|.+++++++++.....+
T Consensus       775 ~~~~~~--~~~~~~~~~a~~~L~~~~~----~~~gn~R~L~~~i~~~~~~~~~~  822 (854)
T 1qvr_A          775 ARLAEK--RISLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETPLAQ  822 (854)
T ss_dssp             HHHHTT--TCEEEECHHHHHHHHHHHC----BTTTBTSTHHHHHHHHTHHHHHH
T ss_pred             HHHHhC--CceEEECHHHHHHHHHcCC----CCCCChHHHHHHHHHHHHHHHHH
Confidence            321111  2235688999999999876    12699999999999988765433

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.82  E-value=1.9e-19  Score=165.55  Aligned_cols=173  Identities=13%  Similarity=0.182  Sum_probs=119.5

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccch----HHHHHHHHHc---cCcEEEEe
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRIKEA---EGGILFVD  269 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~a---~~~il~iD  269 (438)
                      .++.++||+||||||||++|+++|+.++.       +++.+++++   .++|...    ..++..|+.+   .++|||||
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~-------~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iD  131 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNF-------PFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVD  131 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTC-------SEEEEECGG---GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEC
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeCHH---HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            46678999999999999999999998754       788887765   3455433    4566777764   36999999


Q ss_pred             CcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCChhHHHHhhhCc-CccCCCCcceeCCCCCH-HHHH
Q 013706          270 EAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNE-GFCRRVTKFFHFNDFNS-EELA  342 (438)
Q Consensus       270 Eid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~~~~~~~~~~~p-~l~~R~~~~i~~~~~~~-~e~~  342 (438)
                      |+|.+...+..+ ......+++.|...+++     ..+++|++++.....     ++ .+++||+..|.+|+++. +++.
T Consensus       132 Eid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l-----~~~~l~~rf~~~i~~p~l~~r~~i~  205 (272)
T 1d2n_A          132 DIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL-----QEMEMLNAFSTTIHVPNIATGEQLL  205 (272)
T ss_dssp             CHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH-----HHTTCTTTSSEEEECCCEEEHHHHH
T ss_pred             ChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc-----chhhhhcccceEEcCCCccHHHHHH
Confidence            999997654322 22334566777777763     346677776655432     44 67889999999999987 6666


Q ss_pred             HHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          343 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       343 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      .++...                ..++++++..++....+..  -++|.|.+.++++.|...
T Consensus       206 ~i~~~~----------------~~~~~~~~~~l~~~~~g~~--~~g~ir~l~~~l~~a~~~  248 (272)
T 1d2n_A          206 EALELL----------------GNFKDKERTTIAQQVKGKK--VWIGIKKLLMLIEMSLQM  248 (272)
T ss_dssp             HHHHHH----------------TCSCHHHHHHHHHHHTTSE--EEECHHHHHHHHHHHTTS
T ss_pred             HHHHhc----------------CCCCHHHHHHHHHHhcCCC--ccccHHHHHHHHHHHhhh
Confidence            666541                1235566666666553211  256888999998887554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.82  E-value=1.8e-20  Score=171.19  Aligned_cols=133  Identities=26%  Similarity=0.338  Sum_probs=111.7

Q ss_pred             CCCCcHHHHHH---HcCCHHHHHHHhcCCCCC-------CcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc
Q 013706            2 QMAQTPLHVSA---GYNKAEIVKSLLEWPGND-------KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA   71 (438)
Q Consensus         2 ~~g~tpLh~A~---~~g~~~~v~~Ll~~~~~~-------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   71 (438)
                      ..|+||||+|+   ..|+.+++++|++++...       ..+++..|..|+||||+|+..|+.+++++|+++|++++.++
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  123 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA  123 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence            35999999999   679999999999832110       13345556689999999999999999999999999999998


Q ss_pred             --------------CCCCcHHHHHhhcccccCcHHHHHHHHh---CCCCCcccCCCCCccccccccCCCc--------hh
Q 013706           72 --------------NNGMTPLHLSVWYSIRSEDYATVKTLLE---YNADCSAKDNEGKTPLDHLSNGPGS--------AK  126 (438)
Q Consensus        72 --------------~~g~t~L~~A~~~~~~~~~~~~~~~Ll~---~ga~~~~~d~~g~t~l~~~a~~~~~--------~~  126 (438)
                                    ..|+||||+|+    ..|+.+++++|++   +|++++.+|..|+||||+++..+..        .+
T Consensus       124 ~~~~~~~~~~~~~~~~g~tpL~~A~----~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~  199 (260)
T 3jxi_A          124 RGRFFQPKDEGGYFYFGELPLSLAA----CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK  199 (260)
T ss_dssp             EECCCSSSCCCCSCCSCSSHHHHHH----HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHH
T ss_pred             cccccCcccccccccCCCCHHHHHH----HcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHH
Confidence                          68999999999    8899999999999   9999999999999999555532221        47


Q ss_pred             HHHHHHhccchH
Q 013706          127 LRELLLWHSEEQ  138 (438)
Q Consensus       127 ~~~lL~~~~~~~  138 (438)
                      ++++|+..+++.
T Consensus       200 ~v~~Ll~~ga~~  211 (260)
T 3jxi_A          200 MYDLLLIKCAKL  211 (260)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHhCccc
Confidence            888888887665

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.81  E-value=1.4e-20  Score=169.78  Aligned_cols=129  Identities=17%  Similarity=0.168  Sum_probs=89.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|+||||.|+..|+.+.++.|++    .|++++. +..|.||||+|+..|+.+++++|++.|+++|.+|..|.||||+|+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~----~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIA----HGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV   78 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhc----cCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            69999999999999999999999    6788875 467999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                          ..|+.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+++....
T Consensus        79 ----~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~~  132 (239)
T 1ycs_B           79 ----CAGHTEIVKFLVQFGVNVNAADSDGWTPL-HCAASCNNVQVCKFLVESGAAVFAM  132 (239)
T ss_dssp             ----HHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ----HcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccee
Confidence                88999999999999999999999999999 6666678899999999988775543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.81  E-value=3.6e-19  Score=164.75  Aligned_cols=241  Identities=9%  Similarity=0.008  Sum_probs=155.1

Q ss_pred             hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEEEeecc
Q 013706          164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRT  240 (438)
Q Consensus       164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~  240 (438)
                      +.|.+.-..+|...+....            ....+++++|+||||||||++++.+++++.....   .....++.+++.
T Consensus        22 L~~Re~E~~~i~~~L~~~i------------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~   89 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSL------------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL   89 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred             cCCHHHHHHHHHHHHHHHh------------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence            5556655555555433221            1347889999999999999999999999964221   112357788876


Q ss_pred             cccc----------ccc------ccchHHHHHHHHHc-----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc--
Q 013706          241 DLVG----------EFV------GHTGPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--  297 (438)
Q Consensus       241 ~~~~----------~~~------g~~~~~~~~~~~~a-----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~--  297 (438)
                      .+.+          ++.      |++...+...|...     ...|+||||+|.|.  .|        +++..|+++.  
T Consensus        90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q--------~~L~~l~~~~~~  159 (318)
T 3te6_A           90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SE--------KILQYFEKWISS  159 (318)
T ss_dssp             CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CT--------HHHHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cc--------hHHHHHHhcccc
Confidence            5332          222      33556778888764     23799999999998  33        5666666644  


Q ss_pred             cCCCEEEEEecCChhH-HHHhhhCcCccCCCC-cceeCCCCCHHHHHHHHHHHHhccccccc----c-------------
Q 013706          298 DGGKVVVIFAGYSEPM-KRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSL----L-------------  358 (438)
Q Consensus       298 ~~~~v~vi~~~~~~~~-~~~~~~~p~l~~R~~-~~i~~~~~~~~e~~~il~~~l~~~~~~~~----~-------------  358 (438)
                      +++++.+|+.++.-.. +..+  ++++++||. .+|.|++|+.+|+.+|++..+.......+    .             
T Consensus       160 ~~s~~~vI~i~n~~d~~~~~L--~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~  237 (318)
T 3te6_A          160 KNSKLSIICVGGHNVTIREQI--NIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREG  237 (318)
T ss_dssp             SSCCEEEEEECCSSCCCHHHH--HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC---
T ss_pred             cCCcEEEEEEecCcccchhhc--chhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence            4567888877654322 2222  788899995 78999999999999999999987432100    0             


Q ss_pred             ------ccc-cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccC-CCCChhhhhhccHHHHHHHH
Q 013706          359 ------YGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-DCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       359 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~-~~~~~~~~~~i~~~d~~~a~  430 (438)
                            .++ .....++++++.-.++....    ..|+.|...+++++|...+-.+... .. ..++...||.+.+.+++
T Consensus       238 ~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~----~~GD~R~Al~ilr~A~~~ae~e~~~k~~-~~~~~~~i~~~~~~~~~  312 (318)
T 3te6_A          238 QNQKIPDNVIVINHKINNKITQLIAKNVAN----VSGSTEKAFKICEAAVEISKKDFVRKGG-LQKGKLVVSQEMVPRYF  312 (318)
T ss_dssp             -----CTTEEEECEECCHHHHHHHHHHHHH----HHCSHHHHHHHHHHHHHHHHHHHHHHTT-EETTEECCSEECCTHHH
T ss_pred             ccccccccccccccccCHHHHHHHHHHHHh----hCChHHHHHHHHHHHHHHHHHHHHhccC-CCCCcEEeeHHHHHHHH
Confidence                  001 12234688888888775321    1577888899999999877443211 11 12234456666666665


Q ss_pred             HHH
Q 013706          431 KLL  433 (438)
Q Consensus       431 ~~~  433 (438)
                      ..+
T Consensus       313 ~~~  315 (318)
T 3te6_A          313 SEA  315 (318)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.80  E-value=1.3e-18  Score=154.77  Aligned_cols=203  Identities=23%  Similarity=0.224  Sum_probs=139.6

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .+++++|.+..++.+.+++..                ..+.+++|+||||||||++|+.+++.+...+.  ...++.+++
T Consensus        15 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~~~   76 (226)
T 2chg_A           15 TLDEVVGQDEVIQRLKGYVER----------------KNIPHLLFSGPPGTGKTATAIALARDLFGENW--RDNFIEMNA   76 (226)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHT----------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG--GGGEEEEET
T ss_pred             CHHHHcCcHHHHHHHHHHHhC----------------CCCCeEEEECCCCCCHHHHHHHHHHHHhcccc--ccceEEecc
Confidence            478899999998888877431                13456999999999999999999998753221  225666666


Q ss_pred             ccccccccccchHHHHHHHH-----HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChh
Q 013706          240 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP  312 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~-----~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~  312 (438)
                      +...+..  .....+.....     ...+++|||||+|.+.+.           ..+.|+..++.  ..+.+|++++...
T Consensus        77 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~~~~~~i~~~~~~~  143 (226)
T 2chg_A           77 SDERGID--VVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMYSKSCRFILSCNYVS  143 (226)
T ss_dssp             TCTTCHH--HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             ccccChH--HHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhcCCCCeEEEEeCChh
Confidence            5432210  01111222221     135689999999998752           23556666653  4466666655433


Q ss_pred             HHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccc
Q 013706          313 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL  392 (438)
Q Consensus       313 ~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  392 (438)
                      .     .++++.+||. .+.|++|+.+++.+++..++.+..           ..++++++..+... +      .||.+.
T Consensus       144 ~-----~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~-~------~g~~r~  199 (226)
T 2chg_A          144 R-----IIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALIYI-S------GGDFRK  199 (226)
T ss_dssp             G-----SCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHHHH-H------TTCHHH
T ss_pred             h-----cCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHH-c------CCCHHH
Confidence            2     2788899995 999999999999999998886532           23566777777754 4      788898


Q ss_pred             hHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          393 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       393 l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                      +.++++.+...+              ..|+.+|+.+++.
T Consensus       200 l~~~l~~~~~~~--------------~~I~~~~v~~~~~  224 (226)
T 2chg_A          200 AINALQGAAAIG--------------EVVDADTIYQITA  224 (226)
T ss_dssp             HHHHHHHHHHTC--------------SCBCHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--------------ceecHHHHHHHhc
Confidence            888888776542              4789999998875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.80  E-value=3e-20  Score=172.22  Aligned_cols=128  Identities=21%  Similarity=0.172  Sum_probs=115.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCC-CcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG-MTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A   81 (438)
                      +|+||||+||..|+.+++++|++    .|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..| .||||+|
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A  136 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA  136 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Confidence            68999999999999999999999    789999999999999999999999999999999999999999999 7999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      +    ..|+.+++++|+++|+++... ..|+||| |.|+..++.+++++|+..+++...
T Consensus       137 ~----~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~n~  189 (285)
T 3kea_A          137 V----MLNDVSIVSYFLSEIPSTFDL-AILLSCI-HITIKNGHVDMMILLLDYMTSTNT  189 (285)
T ss_dssp             H----HTTCHHHHHHHHTTSCTTCCC-STHHHHH-HHHHHTTCHHHHHHHHHHHHHTCT
T ss_pred             H----HcCCHHHHHHHHhCCCccccc-cCCccHH-HHHHHcChHHHHHHHHHcCCCCCc
Confidence            9    889999999999999877332 2899999 666667889999999988766443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.80  E-value=1.7e-20  Score=177.46  Aligned_cols=135  Identities=22%  Similarity=0.159  Sum_probs=116.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC---HHHHHHHHHCC-CCcccccCCCCcH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC---NEAAKLLLAHG-AFIEAKANNGMTP   77 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~~~~g~t~   77 (438)
                      ..|+||||+||..|+.++|++|++    .|++++.+|..|+||||+|+..|+   .++++.|++++ ++++.+|..|+||
T Consensus       129 ~~g~TpLh~Aa~~g~~~~v~~Ll~----~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tp  204 (327)
T 1sw6_A          129 EHGNTPLHWLTSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI  204 (327)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCH
Confidence            379999999999999999999999    789999999999999999999998   68888888886 7899999999999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCC---------------------------------------------CCcccCCCCC
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNA---------------------------------------------DCSAKDNEGK  112 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga---------------------------------------------~~~~~d~~g~  112 (438)
                      ||+|+......|+.+++++|++.++                                             +++.+|..|+
T Consensus       205 Lh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~  284 (327)
T 1sw6_A          205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD  284 (327)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSC
T ss_pred             HHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCC
Confidence            9999932222789999999987643                                             5778889999


Q ss_pred             ccccccccCCCchhHHHHHHhccchHHHH
Q 013706          113 TPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus       113 t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      ||| |.|+..++.+++++|+..|++...+
T Consensus       285 TpL-h~A~~~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          285 TCL-NIAARLGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             CHH-HHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             CHH-HHHHHcCCHHHHHHHHHcCCCCccc
Confidence            999 6666678899999999988876544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.80  E-value=7.9e-20  Score=170.35  Aligned_cols=121  Identities=25%  Similarity=0.324  Sum_probs=111.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.||||+||..|+.++|++|++    .|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLE----RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH----HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            46799999999999999999999    78899999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL  132 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~  132 (438)
                          ..|+.+++++|+++|++++..|..|.||| +.++..+..+++..++
T Consensus       115 ----~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B          115 ----SCGYLDIAEYLISQGAHVGAVNSEGDTPL-DIAEEEAMEELLQNEV  159 (299)
T ss_dssp             ----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHCCSHHHHHHHHHHH
T ss_pred             ----HcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHhcchHHHHHHHH
Confidence                88999999999999999999999999999 5555566667666655

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.80  E-value=7.1e-20  Score=180.19  Aligned_cols=127  Identities=39%  Similarity=0.483  Sum_probs=115.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.++|++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   87 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA   87 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence            368999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      +    ..|+.+++++|+++|++++..+..|.||| +.|+..++.+++++|+..+.+
T Consensus        88 ~----~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~~~~  138 (437)
T 1n11_A           88 A----RIGHTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHVETVLALLEKEAS  138 (437)
T ss_dssp             H----HHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCC
T ss_pred             H----HCCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHHHHHHHHhCCCC
Confidence            9    88999999999999999999999999999 556667788888888876654

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.80  E-value=1.6e-19  Score=172.38  Aligned_cols=231  Identities=17%  Similarity=0.158  Sum_probs=142.5

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-------  231 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-------  231 (438)
                      ..|++++|++.+++.+....  +              .....++||+||||||||++|+++++.+........       
T Consensus        21 ~~f~~i~G~~~~~~~l~~~~--~--------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~   84 (350)
T 1g8p_A           21 FPFSAIVGQEDMKLALLLTA--V--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN   84 (350)
T ss_dssp             CCGGGSCSCHHHHHHHHHHH--H--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred             CCchhccChHHHHHHHHHHh--h--------------CCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence            35889999998766543221  1              113457999999999999999999997742100000       


Q ss_pred             -------------------CCEEEeecccccccccccch--H--------HHHHHHHHccCcEEEEeCcccccCCCCCCC
Q 013706          232 -------------------DRVTEVQRTDLVGEFVGHTG--P--------KTRRRIKEAEGGILFVDEAYRLIPMQKADD  282 (438)
Q Consensus       232 -------------------~~~~~~~~~~~~~~~~g~~~--~--------~~~~~~~~a~~~il~iDEid~l~~~~~~~~  282 (438)
                                         .+++.+........++|...  +        .....+..+.++||||||+|.+.+      
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------  158 (350)
T 1g8p_A           85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------  158 (350)
T ss_dssp             GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------
T ss_pred             cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------
Confidence                               11222221111122333210  0        001234556689999999999976      


Q ss_pred             chhHHHHHHHHHhhccCC---------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCC-CHHHHHHHHH
Q 013706          283 KDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF-NSEELAKILH  346 (438)
Q Consensus       283 ~~~~~~~~~~ll~~~~~~---------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~-~~~e~~~il~  346 (438)
                           .+++.|+..++.+               .+++|+++++... .   .+|+|++||+..+.+++| +.+++.+|++
T Consensus       159 -----~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~-~---l~~~L~~R~~~~~~l~~~~~~~~~~~il~  229 (350)
T 1g8p_A          159 -----HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG-D---LRPQLLDRFGLSVEVLSPRDVETRVEVIR  229 (350)
T ss_dssp             -----HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC-C---CCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC-C---CCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence                 3447777777643               6788888775321 1   278999999888999999 5677778887


Q ss_pred             HHHhcccc-----------------ccc-cccccccccccHHHHHHHHHHHhhHhhhcccc---ccchHHHHHHHHHHhh
Q 013706          347 IKMNNQTE-----------------DSL-LYGFKLHSSCSMDAIAALIEKETTEKQRREMN---GGLVDPMLVNARENLD  405 (438)
Q Consensus       347 ~~l~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n---~~~l~~~~~~a~~~~~  405 (438)
                      ..+.....                 ... .........++++++..+....+      .+|   .|.+.++++.|...+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~------~~~~~~~R~~~~ll~~a~~~A~  303 (350)
T 1g8p_A          230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCI------ALGSDGLRGELTLLRSARALAA  303 (350)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHH------HSSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH------HhCCCCccHHHHHHHHHHHHHH
Confidence            64321100                 000 00001123578889999988887      333   4888888888776652


Q ss_pred             ccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706          406 LRLSFDCLDTDELRTITLEDLEAGLKLLLR  435 (438)
Q Consensus       406 ~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~  435 (438)
                      .+         +...|+.+|+.+++..+.+
T Consensus       304 ~~---------~~~~v~~~~v~~a~~~~l~  324 (350)
T 1g8p_A          304 LE---------GATAVGRDHLKRVATMALS  324 (350)
T ss_dssp             HT---------TCSBCCHHHHHHHHHHHHG
T ss_pred             Hc---------CCCcCCHHHHHHHHHHHHh
Confidence            21         2245899999999887653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.80  E-value=1.1e-19  Score=178.78  Aligned_cols=129  Identities=34%  Similarity=0.503  Sum_probs=98.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.||||+|+..|+.+++++|++    .+++++..|..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+
T Consensus       244 ~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~  319 (437)
T 1n11_A          244 QGVTPLHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS  319 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHH
Confidence            56777777777777777777777    56777777777888888888888888888888888888888888888888887


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                          ..|+.+++++|+++|++++.+|..|+||| +.|+..++.+++++|+..|++...
T Consensus       320 ----~~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          320 ----HYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             ----HSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             ----HcCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHHHHHHHHHCcCCCCC
Confidence                67777888888888888888888888888 445556677788888777765443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.80  E-value=2.1e-19  Score=165.83  Aligned_cols=130  Identities=28%  Similarity=0.331  Sum_probs=120.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC----HHHHHHHHHCCCCcccccCCCCcHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      .|.||||+|+..|+.+++++|+++   .+.+++..|..|+||||+|+..++    .+++++|+++|++++.+|..|.|||
T Consensus       147 ~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L  223 (285)
T 1wdy_A          147 GGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  223 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence            588999999999999999999983   488999999999999999999999    9999999999999999999999999


Q ss_pred             HHHhhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           79 HLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        79 ~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      |+|+    ..++.+++++|++ .|++++.+|..|+||| +.|...++.+++++|+..|++...
T Consensus       224 ~~A~----~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l-~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          224 ILAV----EKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHHH----HTTCHHHHHHHHHSSSCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             HHHH----HcCCHHHHHHHHhccCCCccccCCCCCcHH-HHHHHcCcHHHHHHHHHcCCCCCc
Confidence            9999    8899999999998 7999999999999999 666667899999999998876543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=9.4e-20  Score=173.93  Aligned_cols=124  Identities=23%  Similarity=0.282  Sum_probs=115.3

Q ss_pred             CCcHHHHHHHc-CCHHHHHHHhcCCCCCCccccccc--CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706            4 AQTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQN--MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         4 g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   80 (438)
                      +.|+||.|+.. |+.++++.|++    .|+++|..+  ..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~----~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALA----HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHH----TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHH----cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            45799999999 99999999999    789999988  889999999999999999999999999999999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE  136 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~  136 (438)
                      |+    ..|+.+++++|+++|++++..|.+|.||| +.|+..++.+++++|+..+.
T Consensus       275 A~----~~g~~~~v~~LL~~Gad~~~~d~~G~TpL-~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          275 AT----ILGHTGLACLFLKRGADLGARDSEGRDPL-TIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             HH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHC
T ss_pred             HH----HcCcHHHHHHHHHCcCCCCCcCCCCCCHH-HHHHHCCCHHHHHHHHHcCC
Confidence            99    88999999999999999999999999999 66666788899999986653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.80  E-value=1.1e-19  Score=174.57  Aligned_cols=134  Identities=20%  Similarity=0.231  Sum_probs=111.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccc-----------------ccCCCChHHHHHHHcC--CHHHHHHHHHC
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-----------------QNMYGETPLHMAAKNG--CNEAAKLLLAH   63 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-----------------~d~~g~t~L~~A~~~g--~~~~v~~Ll~~   63 (438)
                      .|+||||+|+..|+.++|++|+++....+.+++.                 .|..|+||||+|+..|  +.+++++|+++
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            4566666666666666666666521111455555                 8889999999999999  99999999999


Q ss_pred             CCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCC-----CcccCCCCCccccccccCCCchhHHHHHHhccchH
Q 013706           64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD-----CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ  138 (438)
Q Consensus        64 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~-----~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~  138 (438)
                      |++++.+|..|.||||+|+    ..|+.+++++|+++|++     ++..|..|+||| |.|+..++.+++++|+..+++.
T Consensus       163 ga~~~~~d~~g~t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~  237 (364)
T 3ljn_A          163 GASPTAKDKADETPLMRAM----EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVEMGIDV  237 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHTTTCCT
T ss_pred             CCCCcccCCCCCCHHHHHH----HcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999    88999999999999999     999999999999 6666788999999999988775


Q ss_pred             HHH
Q 013706          139 RKR  141 (438)
Q Consensus       139 ~~~  141 (438)
                      ...
T Consensus       238 ~~~  240 (364)
T 3ljn_A          238 NME  240 (364)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.80  E-value=6.9e-19  Score=173.72  Aligned_cols=177  Identities=20%  Similarity=0.279  Sum_probs=123.8

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEEE
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE  236 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~  236 (438)
                      .++.++|.+..++++.+++.                .....++||+||||||||++|+++|+.+.....   ....+++.
T Consensus       178 ~ld~iiGr~~~i~~l~~~l~----------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~  241 (468)
T 3pxg_A          178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT  241 (468)
T ss_dssp             CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred             CCCCccCcHHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence            57889999998888877643                135678999999999999999999999854222   23457777


Q ss_pred             eecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH
Q 013706          237 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM  313 (438)
Q Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~  313 (438)
                      ++++   +.+.|+.+..++.+|+.+.   ++|||||    ..           ..+.+.|+..|+.+.+.+|++|+.+.+
T Consensus       242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~-----------~~a~~~L~~~L~~g~v~vI~at~~~e~  303 (468)
T 3pxg_A          242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----AA-----------IDASNILKPSLARGELQCIGATTLDEY  303 (468)
T ss_dssp             C-------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCTTSSSCEEEEECCTTTT
T ss_pred             eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----Cc-----------hhHHHHHHHhhcCCCEEEEecCCHHHH
Confidence            7776   6788888888888887664   7999999    11           134488999999999999999999887


Q ss_pred             HHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706          314 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  378 (438)
Q Consensus       314 ~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (438)
                      ...+..+|++++||. .|.|++|+.+++.+|++.++.+...       .....++++++..+...
T Consensus       304 ~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~-------~~~~~i~~~al~~l~~~  360 (468)
T 3pxg_A          304 RKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEA-------HHRVSITDDAIEAAVKL  360 (468)
T ss_dssp             HHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGG-------GSSCSCCHHHHHHHHHH
T ss_pred             HHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHH
Confidence            666667999999995 6999999999999999988766431       11233555666555543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.80  E-value=4.3e-20  Score=155.06  Aligned_cols=105  Identities=18%  Similarity=0.231  Sum_probs=87.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCCh-HHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET-PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   80 (438)
                      ..|+||||+|+ .|+.+++++|++    .|++++.+|..|+| |||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        43 ~~g~t~L~~A~-~~~~~~v~~Ll~----~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  117 (156)
T 1bi7_B           43 SYGRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL  117 (156)
T ss_dssp             SSSCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH
T ss_pred             CCCCCHHHHHH-cCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            36899999986 999999999999    68999999999999 9999999999999999999999999999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccc
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL  115 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l  115 (438)
                      |+    ..++.+++++|+++|++++..|..|.||.
T Consensus       118 A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~  148 (156)
T 1bi7_B          118 AE----ELGHRDVARYLRAAAGGTRGSNHARIDAA  148 (156)
T ss_dssp             HH----HHTCHHHHHHHSSCC--------------
T ss_pred             HH----HhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence            99    88999999999999999999999999998

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.79  E-value=1.4e-19  Score=171.73  Aligned_cols=132  Identities=28%  Similarity=0.325  Sum_probs=118.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC----HHHHHHHHHCCCCcccccCCCCcHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      .|.||||+||..|+.++|++||++   .|+++|.+|..|+||||+++..++    ..++++|+++|+++|.+|..|+|||
T Consensus       167 ~g~T~L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L  243 (337)
T 4g8k_A          167 GGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  243 (337)
T ss_dssp             CSCCHHHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred             CCCcHHHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            689999999999999999999963   689999999999999999887543    4688999999999999999999999


Q ss_pred             HHHhhcccccCcHHHHHHHHhC-CCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706           79 HLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus        79 ~~A~~~~~~~~~~~~~~~Ll~~-ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                      |+|+    ..++.++++.|+.. |++++.+|.+|+||| |.|+..++.+++++|+..|++.+.+.
T Consensus       244 ~~a~----~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GAd~n~~~  303 (337)
T 4g8k_A          244 ILAV----EKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCGD  303 (337)
T ss_dssp             HHHH----HTTCHHHHHHHHTSTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred             HHHH----HhhhhHHHHHHHHhcCCcccCcCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            9999    88999999999975 899999999999999 66667889999999999998765543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.79  E-value=8.4e-20  Score=157.78  Aligned_cols=129  Identities=18%  Similarity=0.144  Sum_probs=107.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCH----HHHHHHHHCCCCcccccCCCCcHH
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCN----EAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      ++++||.|+..|+.+.++.++.    .+  ++..+ ..|+||||+|+..|+.    +++++|+++|+++|.+|..|+|||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~----~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFE----KG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLF   79 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHH----HS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTH
T ss_pred             cccHHHHHHHcCCHHHHHHHHh----cC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            5789999999999999999997    33  45556 7799999999999975    589999999999999999999999


Q ss_pred             HHHhhcccccCc------HHHHHHHHhCCCCCcccCCCCC-ccccccccCC----CchhHHHHHHh-ccchHHHHH
Q 013706           79 HLSVWYSIRSED------YATVKTLLEYNADCSAKDNEGK-TPLDHLSNGP----GSAKLRELLLW-HSEEQRKRR  142 (438)
Q Consensus        79 ~~A~~~~~~~~~------~~~~~~Ll~~ga~~~~~d~~g~-t~l~~~a~~~----~~~~~~~lL~~-~~~~~~~~~  142 (438)
                      |+|+    ..++      .+++++|+++|++++.+|..|+ ||||+++...    +...++++|+. .|++...++
T Consensus        80 h~a~----~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d  151 (186)
T 3t8k_A           80 FPLF----QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD  151 (186)
T ss_dssp             HHHH----HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred             HHHH----HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence            9999    4444      5789999999999999999999 9995555422    23458888888 887765554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=2.7e-19  Score=164.89  Aligned_cols=124  Identities=20%  Similarity=0.248  Sum_probs=112.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCCcc------cccccCCCChHHHHHHHc---CCHHHHHHHHHCCCCcccccCCCC
Q 013706            5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVE------LEAQNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGM   75 (438)
Q Consensus         5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~   75 (438)
                      .++||.|+..|+.+.+..+++    .|.+      ++..|..|+||||+|+..   |+.+++++|+++|+++|.+|..|+
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~----~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~  206 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYA----DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS  206 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH----TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCC
T ss_pred             hhhhhhHhhhcccHHHHHHHH----hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCC
Confidence            468999999999999999998    5666      455588999999999999   899999999999999999999999


Q ss_pred             cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      ||||+|+    ..|+.+++++|+++|++++.+|.+|.||| +.|...++.+++++|+..++.
T Consensus       207 TpLh~A~----~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          207 TALHYCC----LTDNAECLKLLLRGKASIEIANESGETPL-DIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             CHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHTT
T ss_pred             CHHHHHH----HcCCHHHHHHHHHcCCCCCCccCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence            9999999    88999999999999999999999999999 666667889999999987654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.79  E-value=3.1e-19  Score=172.68  Aligned_cols=231  Identities=16%  Similarity=0.075  Sum_probs=152.5

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC--cCCCCEEEeec
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQR  239 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~  239 (438)
                      ++++|.+...+.+.+++...            .....+.+++|+||||||||++|+.+++.+.....  -....++.+++
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~------------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~   86 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPA------------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA   86 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGG------------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             CCCCCHHHHHHHHHHHHHHH------------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence            67899998888888764432            11245778999999999999999999998843200  00226777876


Q ss_pred             ccccc------c----------ccccchHH-HHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706          240 TDLVG------E----------FVGHTGPK-TRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  298 (438)
Q Consensus       240 ~~~~~------~----------~~g~~~~~-~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  298 (438)
                      .....      .          ..|.+... ...++...    .+.||||||+|.+...+      ....++..++..++
T Consensus        87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~  160 (387)
T 2v1u_A           87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQ  160 (387)
T ss_dssp             TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGG
T ss_pred             CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchh
Confidence            64221      1          11222222 23333322    13599999999997642      12367777887776


Q ss_pred             ----CCCEEEEEecCChhHHHHhhhCcCccCCCCc-ceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706          299 ----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  373 (438)
Q Consensus       299 ----~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~-~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~  373 (438)
                          ..++.+|++++..+....  .++++.+||.. .+.|++|+.+++.+|+...+.....         ...++++++.
T Consensus       161 ~~~~~~~~~~I~~t~~~~~~~~--l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~---------~~~~~~~~~~  229 (387)
T 2v1u_A          161 ELGDRVWVSLVGITNSLGFVEN--LEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN---------PGVLDPDVVP  229 (387)
T ss_dssp             CC-----CEEEEECSCSTTSSS--SCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC---------TTTBCSSHHH
T ss_pred             hcCCCceEEEEEEECCCchHhh--hCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc---------CCCCCHHHHH
Confidence                557788888776643211  27888999965 8999999999999999998864210         1234556666


Q ss_pred             HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      .+....+    ..+||.|.+.++++.|...+..         .+...|+.+|+.++++.+.
T Consensus       230 ~l~~~~~----~~~G~~r~~~~~l~~a~~~a~~---------~~~~~i~~~~v~~a~~~~~  277 (387)
T 2v1u_A          230 LCAALAA----REHGDARRALDLLRVAGEIAER---------RREERVRREHVYSARAEIE  277 (387)
T ss_dssp             HHHHHHH----SSSCCHHHHHHHHHHHHHHHHH---------TTCSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHH----HhccCHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHh
Confidence            6666553    1248899999999998776521         1235688888888887664

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.79  E-value=2.6e-19  Score=165.14  Aligned_cols=129  Identities=26%  Similarity=0.261  Sum_probs=118.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccc-cCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      .|+||||.|+..|+.+++++|++    .+.+++.. +..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   79 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            47899999999999999999999    67888888 77899999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      +    ..|+.+++++|+++|++++..|..|+||| +.++..++.+++++|+..+.+...
T Consensus        80 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~  133 (285)
T 1wdy_A           80 A----IAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKFLYKRGANVNL  133 (285)
T ss_dssp             H----HHTCHHHHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             H----HcCCHHHHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHHHHHHHHhCCCccc
Confidence            9    88999999999999999999999999999 666667889999999988766443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.79  E-value=1.8e-19  Score=173.53  Aligned_cols=127  Identities=20%  Similarity=0.265  Sum_probs=106.8

Q ss_pred             CCCCcHHHHHHHcC---CHHHHHHHhcCCCCCCccccc--------ccCCCChHHHHHHHcCCHHHHHHHHHCC-CCccc
Q 013706            2 QMAQTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEA--------QNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEA   69 (438)
Q Consensus         2 ~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~--------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~   69 (438)
                      ..|+||||+|+..+   +.+++++|++    .|++++.        .|..|+||||+|+..|+.+++++|++++ ++++.
T Consensus       233 ~~g~t~L~~A~~~~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~  308 (373)
T 2fo1_E          233 RNGMTALMIVAHNEGRDQVASAKLLVE----KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK  308 (373)
T ss_dssp             TTSCCHHHHHHHSCSTTHHHHHHHHHH----HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred             CCCCCHHHHHHHhCCcchHHHHHHHHH----CCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence            36788888888877   7888888888    5666664        5678999999999999999999999775 99999


Q ss_pred             ccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           70 KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        70 ~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      +|..|.||||+|+    ..|+.+++++|+++|++++.+|..|+||+ +.|...++.+++++|+..+.+
T Consensus       309 ~d~~g~TpL~~A~----~~g~~~iv~~Ll~~gad~~~~d~~g~t~l-~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          309 QDEDGKTPIMLAA----QEGRIEVVMYLIQQGASVEAVDATDHTAR-QLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             CCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCSSCCCSSSCCHH-HHHHHTTCHHHHHHHHTTC--
T ss_pred             cCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccCCCCCCCCHH-HHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999999    78899999999999999999999999999 666667888999999877654

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.79  E-value=8.3e-19  Score=168.88  Aligned_cols=219  Identities=17%  Similarity=0.156  Sum_probs=156.3

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  240 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  240 (438)
                      +..++|.+...+++.+.+..+              +....+++++|++|||||++|++++...    .....+|+.++++
T Consensus       136 ~~~~ig~s~~m~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lAr~ih~~s----~r~~~~fv~v~~~  197 (387)
T 1ny5_A          136 EEEYVFESPKMKEILEKIKKI--------------SCAECPVLITGESGVGKEVVARLIHKLS----DRSKEPFVALNVA  197 (387)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHH--------------TTCCSCEEEECSTTSSHHHHHHHHHHHS----TTTTSCEEEEETT
T ss_pred             chhhhhccHHhhHHHHHHHHh--------------cCCCCCeEEecCCCcCHHHHHHHHHHhc----CCCCCCeEEEecC
Confidence            456788877766666665543              2356779999999999999999999854    3345699999998


Q ss_pred             ccc-----ccccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------
Q 013706          241 DLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------  300 (438)
Q Consensus       241 ~~~-----~~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------  300 (438)
                      .+.     +..+|+...       .....|+.|.+|+||||||+.+.+.           ++..|++.++++        
T Consensus       198 ~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~  266 (387)
T 1ny5_A          198 SIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLE-----------AQAKLLRVIESGKFYRLGGR  266 (387)
T ss_dssp             TSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHH-----------HHHHHHHHHHHSEECCBTCC
T ss_pred             CCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCC
Confidence            753     335554221       2345789999999999999999874           448888888652        


Q ss_pred             -----CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccHH
Q 013706          301 -----KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMD  370 (438)
Q Consensus       301 -----~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~  370 (438)
                           ++.+|++|+.+....+-.  -.+.|..|+ ...|.+|++..  +++..++..++.+...+   ++.. ...++++
T Consensus       267 ~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~---~~~~-~~~~~~~  342 (387)
T 1ny5_A          267 KEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRK---YAKE-VEGFTKS  342 (387)
T ss_dssp             SBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCC-CCEECHH
T ss_pred             ceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHH---cCCC-CCCCCHH
Confidence                 467888888766544321  123344466 45677888764  89999999999875431   1111 2358899


Q ss_pred             HHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          371 AIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                      ++..+..+.|      |||.|+|+|++++|+..+            +-..|+.+|+...+
T Consensus       343 a~~~l~~~~w------pGNvreL~~~i~~~~~~~------------~~~~i~~~~l~~~~  384 (387)
T 1ny5_A          343 AQELLLSYPW------YGNVRELKNVIERAVLFS------------EGKFIDRGELSCLV  384 (387)
T ss_dssp             HHHHHHHSCC------TTHHHHHHHHHHHHHHHC------------CSSEECHHHHHHHC
T ss_pred             HHHHHHhCCC------CcHHHHHHHHHHHHHHhC------------CCCcCcHHHCcHhh
Confidence            9999999999      999999999999998764            11357777776544

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.79  E-value=3.3e-18  Score=179.58  Aligned_cols=243  Identities=16%  Similarity=0.208  Sum_probs=166.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEE
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~  235 (438)
                      ..|+.++|.+...+++.+.+.                ...+.++||+||||||||++|+++++.+....+   .....++
T Consensus       183 ~~~d~~iGr~~~i~~l~~~l~----------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~  246 (758)
T 1r6b_X          183 GGIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY  246 (758)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred             CCCCCccCCHHHHHHHHHHHh----------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence            357889999988877776532                235678999999999999999999998864332   1244567


Q ss_pred             Eeeccccc--ccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          236 EVQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                      .++...+.  .++.|+.+..++.+|+.+.   ++||||||+|.+.+.+...  .....+.+.|...++.+.+.+|++++.
T Consensus       247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~~L~~~l~~~~~~~I~at~~  324 (758)
T 1r6b_X          247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLSSGKIRVIGSTTY  324 (758)
T ss_dssp             ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHHHHSSCSSSCCCEEEEEECH
T ss_pred             EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHHHHHHHHhCCCeEEEEEeCc
Confidence            77766665  4588888888988888764   5899999999998765432  123456677888888899999999888


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      ..+...+..+|+|.+||. .+.|+.|+.+++.+|++..+.....       .....++++++..+.....+. .......
T Consensus       325 ~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~-------~~~v~~~~~al~~~~~~s~~~-i~~~~lp  395 (758)
T 1r6b_X          325 QEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAVKY-INDRHLP  395 (758)
T ss_dssp             HHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHH-------HHTCCCCHHHHHHHHHHHHHH-CTTSCTT
T ss_pred             hHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHhhhh-cccccCc
Confidence            776555566899999996 7999999999999999987765321       112345666666666543321 1111112


Q ss_pred             cchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          391 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      ..+..+++.|.......-.     ......|+.+|+.+++..+
T Consensus       396 ~~~i~lld~a~~~~~~~~~-----~~~~~~v~~~di~~~~~~~  433 (758)
T 1r6b_X          396 DKAIDVIDEAGARARLMPV-----SKRKKTVNVADIESVVARI  433 (758)
T ss_dssp             HHHHHHHHHHHHHHHHSSS-----CCCCCSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccc-----cccCCccCHHHHHHHHHHh
Confidence            3456677766544321100     0122457888888877664

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.79  E-value=2.4e-19  Score=167.14  Aligned_cols=124  Identities=20%  Similarity=0.223  Sum_probs=114.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCCccccc------ccCCCChHHHHHHHc---CCHHHHHHHHHCCCCcccccCCCC
Q 013706            5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA------QNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGM   75 (438)
Q Consensus         5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~------~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~   75 (438)
                      .++||.|+..|+.+.++.|+.    .+++++.      .+..|+||||+|+..   |+.+++++|+++|+++|.+|..|+
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~----~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH----TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             HHHHhhhhhccCHHHHHHHHh----cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            467999999999999999998    6788887      688999999999997   899999999999999999999999


Q ss_pred             cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      ||||+|+    ..|+.+++++|+++|++++.+|.+|.||| +.|...++.+++++|+..+++
T Consensus       228 TpLh~A~----~~g~~~~v~~Ll~~gad~~~~d~~G~TpL-~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          228 TALHYAA----LYNQPDCLKLLLKGRALVGTVNEAGETAL-DIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             CHHHHHH----HTTCHHHHHHHHHTTCCCSCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHhcCC
Confidence            9999999    88999999999999999999999999999 666667888999999987654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.78  E-value=3.7e-19  Score=169.34  Aligned_cols=130  Identities=30%  Similarity=0.330  Sum_probs=118.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|.|+||.||..|+.+.|+.|+..   .+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence            367999999999999999999984   68889999999999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                          ..|+.+++++|+++|++++..|..|.||| +.|+..++.+++++|+..+.+...
T Consensus       100 ----~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~  152 (351)
T 3utm_A          100 ----SYGHYEVTELLLKHGACVNAMDLWQFTPL-HEAASKNRVEVCSLLLSHGADPTL  152 (351)
T ss_dssp             ----HTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             ----HCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCcc
Confidence                88999999999999999999999999999 656667889999999988776443

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.78  E-value=5.8e-19  Score=176.61  Aligned_cols=200  Identities=16%  Similarity=0.189  Sum_probs=132.2

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCC---CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA---RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE  236 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~  236 (438)
                      .|++++|.+.+++.+.+++......  .+..+...+.   ..+.++||+||||||||++|+++|++++.       ++++
T Consensus        37 ~~~dliG~~~~~~~L~~~l~~~~~~--~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~-------~~i~  107 (516)
T 1sxj_A           37 NLQQVCGNKGSVMKLKNWLANWENS--KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-------DILE  107 (516)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTHHHH--HHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-------EEEE
T ss_pred             CHHHhcCCHHHHHHHHHHHHHhHhh--chhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC-------CEEE
Confidence            5889999999999999887643211  1111222211   24578999999999999999999998854       7889


Q ss_pred             eecccccccccccchH-------HHHHHHHH--------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC
Q 013706          237 VQRTDLVGEFVGHTGP-------KTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK  301 (438)
Q Consensus       237 ~~~~~~~~~~~g~~~~-------~~~~~~~~--------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~  301 (438)
                      +++++.....+.+...       .+...|..        ..++||||||+|.+....+        ..++.|+..++...
T Consensus       108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~~  179 (516)
T 1sxj_A          108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKTS  179 (516)
T ss_dssp             ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHCS
T ss_pred             EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhcC
Confidence            9988765543221110       11222322        3458999999999987544        23566777766544


Q ss_pred             --EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHH
Q 013706          302 --VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE  379 (438)
Q Consensus       302 --v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (438)
                        +++++++...+.      -+++++| ...+.|++|+.+++.+++...+.+..       .    .++++++..++...
T Consensus       180 ~~iIli~~~~~~~~------l~~l~~r-~~~i~f~~~~~~~~~~~L~~i~~~~~-------~----~i~~~~l~~la~~s  241 (516)
T 1sxj_A          180 TPLILICNERNLPK------MRPFDRV-CLDIQFRRPDANSIKSRLMTIAIREK-------F----KLDPNVIDRLIQTT  241 (516)
T ss_dssp             SCEEEEESCTTSST------TGGGTTT-SEEEECCCCCHHHHHHHHHHHHHHHT-------C----CCCTTHHHHHHHHT
T ss_pred             CCEEEEEcCCCCcc------chhhHhc-eEEEEeCCCCHHHHHHHHHHHHHHcC-------C----CCCHHHHHHHHHHc
Confidence              344333222111      2445544 47999999999999999988877542       2    24556777777654


Q ss_pred             hhHhhhccccccchHHHHHHHH
Q 013706          380 TTEKQRREMNGGLVDPMLVNAR  401 (438)
Q Consensus       380 ~~~~~~~~~n~~~l~~~~~~a~  401 (438)
                             .||.|.+.++++.+.
T Consensus       242 -------~GdiR~~i~~L~~~~  256 (516)
T 1sxj_A          242 -------RGDIRQVINLLSTIS  256 (516)
T ss_dssp             -------TTCHHHHHHHHTHHH
T ss_pred             -------CCcHHHHHHHHHHHH
Confidence                   678888888887664

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.78  E-value=6.9e-19  Score=167.47  Aligned_cols=106  Identities=35%  Similarity=0.504  Sum_probs=100.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.++|++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus        56 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A  131 (351)
T 3utm_A           56 GRKSTPLHLAAGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA  131 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            368999999999999999999999    7899999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL  115 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l  115 (438)
                      +    ..|+.+++++|+++|++++..+..|.+|+
T Consensus       132 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l  161 (351)
T 3utm_A          132 A----SKNRVEVCSLLLSHGADPTLVNCHGKSAV  161 (351)
T ss_dssp             H----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             H----HcCCHHHHHHHHHcCCCCccccCCCCcch
Confidence            9    88999999999999999998887776666

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.78  E-value=1.8e-18  Score=155.91  Aligned_cols=186  Identities=10%  Similarity=0.008  Sum_probs=125.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHH-HccCcEEEEeCcccccC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLIP  276 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~il~iDEid~l~~  276 (438)
                      .+.+++|+||||||||++|+++++.+...+    ..++.+++.++...+..        .+. ...+.+|||||+|.+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~vliiDe~~~~~~  118 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELE----RRSFYIPLGIHASISTA--------LLEGLEQFDLICIDDVDAVAG  118 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEEGGGGGGSCGG--------GGTTGGGSSEEEEETGGGGTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEHHHHHHHHHH--------HHHhccCCCEEEEeccccccC
Confidence            467899999999999999999999987643    26677777665543211        111 13568999999999875


Q ss_pred             CCCCCCchhHHHHHHHHHhh-ccCCCE-EEEEecCChhHHHHhhhCcCccCCCC--cceeCCCCCHHHHHHHHHHHHhcc
Q 013706          277 MQKADDKDYGIEALEEIMSV-MDGGKV-VVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       277 ~~~~~~~~~~~~~~~~ll~~-~~~~~v-~vi~~~~~~~~~~~~~~~p~l~~R~~--~~i~~~~~~~~e~~~il~~~l~~~  352 (438)
                      ...      ....+..++.. .+.+.+ +++.++......  ...++++.+||.  ..+.|++|+.+++.+++..++.+.
T Consensus       119 ~~~------~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~--~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~  190 (242)
T 3bos_A          119 HPL------WEEAIFDLYNRVAEQKRGSLIVSASASPMEA--GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMR  190 (242)
T ss_dssp             CHH------HHHHHHHHHHHHHHHCSCEEEEEESSCTTTT--TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHT
T ss_pred             CHH------HHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH--HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHc
Confidence            320      11222222222 233555 444443322111  111477888885  899999999999999999988753


Q ss_pred             ccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          353 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                      .           ..++++++..+...+       .||.|.+.++++++...+.          .+...|+.+|+.++++
T Consensus       191 ~-----------~~~~~~~~~~l~~~~-------~g~~r~l~~~l~~~~~~a~----------~~~~~It~~~v~~~l~  241 (242)
T 3bos_A          191 G-----------LQLPEDVGRFLLNRM-------ARDLRTLFDVLDRLDKASM----------VHQRKLTIPFVKEMLR  241 (242)
T ss_dssp             T-----------CCCCHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHHH----------HHTCCCCHHHHHHHHT
T ss_pred             C-----------CCCCHHHHHHHHHHc-------cCCHHHHHHHHHHHHHHHH----------HhCCCCcHHHHHHHhh
Confidence            2           245677777777643       7899999999999887751          1224699999988864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.77  E-value=2e-19  Score=160.97  Aligned_cols=111  Identities=23%  Similarity=0.197  Sum_probs=101.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~   80 (438)
                      ..|+||||+||..|+.+++++|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+
T Consensus        52 ~~g~tpLh~A~~~g~~~~v~~Ll~----~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  127 (229)
T 2vge_A           52 EEGITALHNAICGANYSIVDFLIT----AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK  127 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHH
Confidence            479999999999999999999999    689999999999999999999999999999999999999986 699999999


Q ss_pred             H--hhcccccCcHHHHHHHHhCCCCCcccCCCCCcccccccc
Q 013706           81 S--VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN  120 (438)
Q Consensus        81 A--~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~  120 (438)
                      |  +    ..++.+++++|+++|++++..|..|.+|++.++.
T Consensus       128 A~a~----~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~  165 (229)
T 2vge_A          128 CDPY----REGYADCATYLADVEQSMGLMNSGAVYALWDYSA  165 (229)
T ss_dssp             CCTT----STTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCC
T ss_pred             HHHH----hcChHHHHHHHHHcCCCcccccCCchHHHHHHhh
Confidence            9  7    8899999999999999988888777777743333

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.77  E-value=2.3e-18  Score=166.48  Aligned_cols=226  Identities=13%  Similarity=0.115  Sum_probs=153.7

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc---CCcC-CCCEEE
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILP-TDRVTE  236 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~---~~~~-~~~~~~  236 (438)
                      .++++|.+...+.+.+++....            ....+.+++|+||||||||++|+.+++.+...   .... ..+++.
T Consensus        19 p~~l~gr~~~~~~l~~~l~~~~------------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~   86 (384)
T 2qby_B           19 FKEIPFREDILRDAAIAIRYFV------------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAY   86 (384)
T ss_dssp             CSSCTTCHHHHHHHHHHHHHHH------------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEE
T ss_pred             CCCCCChHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEE
Confidence            3789999999888887765432            12356789999999999999999999988432   0011 336778


Q ss_pred             eeccccc-----------ccc-------cccchHH-HHHHHHHc--cCcEEEEeCcccccCCC-CCCCchhHHHH-HHHH
Q 013706          237 VQRTDLV-----------GEF-------VGHTGPK-TRRRIKEA--EGGILFVDEAYRLIPMQ-KADDKDYGIEA-LEEI  293 (438)
Q Consensus       237 ~~~~~~~-----------~~~-------~g~~~~~-~~~~~~~a--~~~il~iDEid~l~~~~-~~~~~~~~~~~-~~~l  293 (438)
                      +++....           ..+       .|..... +..++...  .++||||||+|.+.... +        .+ +..|
T Consensus        87 i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~--------~~~l~~l  158 (384)
T 2qby_B           87 VNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGG--------DIVLYQL  158 (384)
T ss_dssp             EEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTS--------HHHHHHH
T ss_pred             EECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCC--------ceeHHHH
Confidence            8765432           111       1222222 33333332  23499999999997653 3        44 6666


Q ss_pred             HhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706          294 MSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  373 (438)
Q Consensus       294 l~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~  373 (438)
                      +...  .++.+|++++..+....  .++++++||...+.|++|+.+++.+|+..++.+.        +. ...++++++.
T Consensus       159 ~~~~--~~~~iI~~t~~~~~~~~--l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~--------~~-~~~~~~~~~~  225 (384)
T 2qby_B          159 LRSD--ANISVIMISNDINVRDY--MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG--------LI-KGTYDDEILS  225 (384)
T ss_dssp             HTSS--SCEEEEEECSSTTTTTT--SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT--------SC-TTSCCSHHHH
T ss_pred             hcCC--cceEEEEEECCCchHhh--hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh--------cc-cCCcCHHHHH
Confidence            6666  67888888776543211  2788889997899999999999999999988631        10 1235566777


Q ss_pred             HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      .+.....    ..+||.|.+.++++.|...+.           +...|+.+|+..+++.+.
T Consensus       226 ~i~~~~~----~~~G~~r~a~~~l~~a~~~a~-----------~~~~i~~~~v~~~~~~~~  271 (384)
T 2qby_B          226 YIAAISA----KEHGDARKAVNLLFRAAQLAS-----------GGGIIRKEHVDKAIVDYE  271 (384)
T ss_dssp             HHHHHHH----TTCCCHHHHHHHHHHHHHHTT-----------SSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHH----hccCCHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHHh
Confidence            6666553    225889999999999987762           234688888888887654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.77  E-value=1e-18  Score=164.91  Aligned_cols=185  Identities=18%  Similarity=0.145  Sum_probs=130.3

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++.+++.+.+++..               ...+..+|++||||||||++|+++++.++.       +++++++
T Consensus        24 ~~~~ivg~~~~~~~l~~~l~~---------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~-------~~~~i~~   81 (324)
T 3u61_B           24 TIDECILPAFDKETFKSITSK---------------GKIPHIILHSPSPGTGKTTVAKALCHDVNA-------DMMFVNG   81 (324)
T ss_dssp             STTTSCCCHHHHHHHHHHHHT---------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTE-------EEEEEET
T ss_pred             CHHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-------CEEEEcc
Confidence            588999999999888887541               224455788899999999999999998864       7888887


Q ss_pred             ccccccccccchHHHHHHHHH---c-----cCcEEEEeCccccc-CCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec
Q 013706          240 TDLVGEFVGHTGPKTRRRIKE---A-----EGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG  308 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~---a-----~~~il~iDEid~l~-~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~  308 (438)
                      ++..       ...++..+..   .     .++||||||+|.+. .           ...+.|+..++.  ..+.+|+++
T Consensus        82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~-----------~~~~~L~~~le~~~~~~~iI~~~  143 (324)
T 3u61_B           82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA-----------ESQRHLRSFMEAYSSNCSIIITA  143 (324)
T ss_dssp             TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH-----------HHHHHHHHHHHHHGGGCEEEEEE
T ss_pred             cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH-----------HHHHHHHHHHHhCCCCcEEEEEe
Confidence            6632       2233332222   1     35899999999997 4           334677777765  456666665


Q ss_pred             CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccH-HHHHHHHHHHhhHhhhcc
Q 013706          309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM-DAIAALIEKETTEKQRRE  387 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  387 (438)
                      +...  .   .+|++++|| .++.|++|+.+++.+|+..++..........+    ..+++ +++..++.. +      .
T Consensus       144 n~~~--~---l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~----~~~~~~~~~~~l~~~-~------~  206 (324)
T 3u61_B          144 NNID--G---IIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG----IAIADMKVVAALVKK-N------F  206 (324)
T ss_dssp             SSGG--G---SCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT----CCBSCHHHHHHHHHH-T------C
T ss_pred             CCcc--c---cCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCCCcHHHHHHHHHh-C------C
Confidence            5443  2   389999999 68999999999988777665544321111112    33455 777777766 3      7


Q ss_pred             ccccchHHHHHHHH
Q 013706          388 MNGGLVDPMLVNAR  401 (438)
Q Consensus       388 ~n~~~l~~~~~~a~  401 (438)
                      ||.|.+.+.++.+.
T Consensus       207 gd~R~a~~~L~~~~  220 (324)
T 3u61_B          207 PDFRKTIGELDSYS  220 (324)
T ss_dssp             SCTTHHHHHHHHHG
T ss_pred             CCHHHHHHHHHHHh
Confidence            89999999998886

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.77  E-value=8.8e-19  Score=157.37  Aligned_cols=129  Identities=24%  Similarity=0.331  Sum_probs=110.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|+||||+|+..|+.+++++|++    .|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus        75 ~~~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~  150 (240)
T 3eu9_A           75 LNSTPLHWATRQGHLSMVVQLMK----YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA  150 (240)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCChhHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHH
Confidence            48899999999999999999998    68889999999999999999999999999999999999999999999999998


Q ss_pred             hcccccCc-HHHHHHHHhCCCCCcccCC-CCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           83 WYSIRSED-YATVKTLLEYNADCSAKDN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        83 ~~~~~~~~-~~~~~~Ll~~ga~~~~~d~-~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                          ..++ .+++++|++.|++++..+. .|.||| +.|+..+..+++++|+..+.+...
T Consensus       151 ----~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~  205 (240)
T 3eu9_A          151 ----YRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL-HWAVLAGNTTVISLLLEAGANVDA  205 (240)
T ss_dssp             ----HHCCSSTTHHHHHHTTCCTTCCCTTTCCCHH-HHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             ----HhCChHHHHHHHHhcCCCcchhhccCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence                3344 6788888888999888886 888999 556667788888888887766543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=8.8e-19  Score=133.29  Aligned_cols=92  Identities=50%  Similarity=0.711  Sum_probs=85.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706           40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS  119 (438)
Q Consensus        40 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a  119 (438)
                      +|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+    ..++.+++++|+++|++++.+|..|+||| +.|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l-~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHH
Confidence            4899999999999999999999999999999999999999999    88999999999999999999999999999 666


Q ss_pred             cCCCchhHHHHHHhccc
Q 013706          120 NGPGSAKLRELLLWHSE  136 (438)
Q Consensus       120 ~~~~~~~~~~lL~~~~~  136 (438)
                      +..++.+++++|+..|+
T Consensus        76 ~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           76 ARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHTTCHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHcCC
Confidence            66788999999998775

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.77  E-value=3e-17  Score=147.99  Aligned_cols=202  Identities=17%  Similarity=0.184  Sum_probs=138.9

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC-------
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-------  232 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~-------  232 (438)
                      .+++++|.+...+.+.+.+..               ...+..++|+||||||||++|+.+++.+.........       
T Consensus        21 ~~~~~~g~~~~~~~l~~~l~~---------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (250)
T 1njg_A           21 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN   85 (250)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHH---------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred             cHHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence            467899999998888876432               1234579999999999999999999988643221111       


Q ss_pred             ----------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706          233 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS  295 (438)
Q Consensus       233 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~  295 (438)
                                .++.+....      ......++.+++..       .+.+|||||+|.+.+           ..++.|+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~~  148 (250)
T 1njg_A           86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK  148 (250)
T ss_dssp             HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHH
T ss_pred             HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHHH
Confidence                      112221111      01223455555543       247999999999864           34577777


Q ss_pred             hccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706          296 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  373 (438)
Q Consensus       296 ~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~  373 (438)
                      .++.  ..+.+|++++....     .++++.+|+ ..+.|++|+.+++.+++..++.+..           ..++++++.
T Consensus       149 ~l~~~~~~~~~i~~t~~~~~-----~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~-----------~~~~~~~~~  211 (250)
T 1njg_A          149 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ  211 (250)
T ss_dssp             HHHSCCTTEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHH
T ss_pred             HHhcCCCceEEEEEeCChHh-----CCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHH
Confidence            7765  45677777655432     267788886 8999999999999999999887532           235667777


Q ss_pred             HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                      .+....       .||.+.+.++++++....             ...|+.+|+++++
T Consensus       212 ~l~~~~-------~G~~~~~~~~~~~~~~~~-------------~~~i~~~~v~~~~  248 (250)
T 1njg_A          212 LLARAA-------EGSLRDALSLTDQAIASG-------------DGQVSTQAVSAML  248 (250)
T ss_dssp             HHHHHH-------TTCHHHHHHHHHHHHTTT-------------TSSBCHHHHHHHS
T ss_pred             HHHHHc-------CCCHHHHHHHHHHHHhcc-------------CceecHHHHHHHh
Confidence            777654       688899999988874332             1268999998875

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.76  E-value=9.1e-19  Score=165.78  Aligned_cols=228  Identities=14%  Similarity=0.094  Sum_probs=139.3

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..+++++|++.+++.+...+.                  ...++||+||||||||++|+++|+.+..       +++.++
T Consensus        24 ~~~~~i~g~~~~~~~l~~~l~------------------~~~~vll~G~pGtGKT~la~~la~~~~~-------~~~~i~   78 (331)
T 2r44_A           24 EVGKVVVGQKYMINRLLIGIC------------------TGGHILLEGVPGLAKTLSVNTLAKTMDL-------DFHRIQ   78 (331)
T ss_dssp             HHTTTCCSCHHHHHHHHHHHH------------------HTCCEEEESCCCHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred             HhccceeCcHHHHHHHHHHHH------------------cCCeEEEECCCCCcHHHHHHHHHHHhCC-------CeEEEe
Confidence            356789999998887766432                  1358999999999999999999998754       566665


Q ss_pred             cc------cccccccccchHHHHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------
Q 013706          239 RT------DLVGEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------  300 (438)
Q Consensus       239 ~~------~~~~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------  300 (438)
                      +.      ++.+.......   ...+...    .++||||||+|.+.+           .+++.|++.|+++        
T Consensus        79 ~~~~~~~~~l~g~~~~~~~---~~~~~~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~  144 (331)
T 2r44_A           79 FTPDLLPSDLIGTMIYNQH---KGNFEVKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTT  144 (331)
T ss_dssp             CCTTCCHHHHHEEEEEETT---TTEEEEEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEE
T ss_pred             cCCCCChhhcCCceeecCC---CCceEeccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEE
Confidence            52      12222110000   0000011    137999999999875           3447777777642        


Q ss_pred             -----CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccc-----------cccccc
Q 013706          301 -----KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLL-----------YGFKLH  364 (438)
Q Consensus       301 -----~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~-----------~~~~~~  364 (438)
                           .+++|+++++.........+|++++||+..+.+++|+.+++.+|++..+.........           ....-.
T Consensus       145 ~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  224 (331)
T 2r44_A          145 YPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINK  224 (331)
T ss_dssp             EECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHT
T ss_pred             EECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhcc
Confidence                 4567777664432111113789999998889999999999999999987653210000           000012


Q ss_pred             ccccHHHHHHHHHHHhhHh-------------hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          365 SSCSMDAIAALIEKETTEK-------------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~-------------~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                      ..++++.+..+........             ...+.+.|.+.+++..|...+..         .+...|+.+|+.+++.
T Consensus       225 v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l---------~g~~~v~~~dv~~~~~  295 (331)
T 2r44_A          225 VTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF---------NNRDYVLPEDIKEVAY  295 (331)
T ss_dssp             CBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH---------TTCSBCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHH
Confidence            3456666666554332110             11123567777777766655422         1224578888888887


Q ss_pred             HHH
Q 013706          432 LLL  434 (438)
Q Consensus       432 ~~~  434 (438)
                      .+.
T Consensus       296 ~vl  298 (331)
T 2r44_A          296 DIL  298 (331)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.76  E-value=1.9e-18  Score=155.19  Aligned_cols=126  Identities=25%  Similarity=0.339  Sum_probs=88.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A   81 (438)
                      .|.||||.|+..|+.+++++|++    .|++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|
T Consensus         8 ~~~~~l~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            8 YSTWDIVKATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             GGGCCHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccchHHHHHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            46677777777777777777777    566677777777777777777777777777777777666443 3477777777


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      +    ..++.+++++|++.|++++..+..|.||+ +.|+..+..+++++|+..+.+
T Consensus        84 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~~~~  134 (240)
T 3eu9_A           84 T----RQGHLSMVVQLMKYGADPSLIDGEGCSCI-HLAAQFGHTSIVAYLIAKGQD  134 (240)
T ss_dssp             H----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCC
T ss_pred             H----HcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCHHHHHHHHHhcCCC
Confidence            7    66777777777777777777777777777 444445666677777666544

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.76  E-value=5.5e-19  Score=153.40  Aligned_cols=167  Identities=20%  Similarity=0.274  Sum_probs=118.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc---CCCCEE
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~---~~~~~~  235 (438)
                      ..+++++|.+...+++.+.+.                ...+.+++|+||||||||++|+.+++.+......   ...+++
T Consensus        19 ~~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T 1jbk_A           19 GKLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL   82 (195)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred             ccccccccchHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence            357889999987777776532                1356789999999999999999999988642221   134667


Q ss_pred             Eeeccccc--ccccccchHHHHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706          236 EVQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      .+++..+.  ..+.|.....+...+...    .+.||||||+|.+.+.+......   .+.+.|...++.+.+.+|++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~~~~~~~~i~~~~  159 (195)
T 1jbk_A           83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPALARGELHCVGATT  159 (195)
T ss_dssp             EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHHHTTSCCEEEEEC
T ss_pred             EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhhccCCeEEEEeCC
Confidence            77776654  345555556666666532    34699999999998654321111   2335556666778888898888


Q ss_pred             ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHH
Q 013706          310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL  345 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il  345 (438)
                      ..........++++++||. .+.|++|+.+++.+|+
T Consensus       160 ~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          160 LDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred             HHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence            7776665556899999996 7999999999998875

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.76  E-value=7e-18  Score=176.78  Aligned_cols=202  Identities=19%  Similarity=0.236  Sum_probs=134.9

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc---CCcCCCCEEE
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE  236 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~---~~~~~~~~~~  236 (438)
                      .++.++|.+..++++.+++.                .....++||+||||||||++|+++|+.+...   .......++.
T Consensus       178 ~ld~iiG~~~~i~~l~~~l~----------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~  241 (758)
T 3pxi_A          178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT  241 (758)
T ss_dssp             CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred             CCCCccCchHHHHHHHHHHh----------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence            57889999998888877643                2356789999999999999999999998432   2223446666


Q ss_pred             eecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH
Q 013706          237 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM  313 (438)
Q Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~  313 (438)
                      ++.   ..+|.|+.+..++.+|..+.   ++|||||    ..           ..+.+.|+..++.+.+.+|++|+.+.+
T Consensus       242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~-----------~~~~~~L~~~l~~~~v~~I~at~~~~~  303 (758)
T 3pxi_A          242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID----AA-----------IDASNILKPSLARGELQCIGATTLDEY  303 (758)
T ss_dssp             C-------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCTTSSSCEEEEECCTTTT
T ss_pred             ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc----Cc-----------hhHHHHHHHHHhcCCEEEEeCCChHHH
Confidence            666   56688888888888888764   6999999    11           134488999999999999999999987


Q ss_pred             HHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccch
Q 013706          314 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV  393 (438)
Q Consensus       314 ~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l  393 (438)
                      ...+..+|++++|| ..|.|+.|+.+++.+|++.++.+...       .....++++++..+...... ........+..
T Consensus       304 ~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~-------~~~~~i~~~al~~~~~~s~~-~i~~~~~p~~a  374 (758)
T 3pxi_A          304 RKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA-------HHRVSITDDAIEAAVKLSDR-YISDRFLPDKA  374 (758)
T ss_dssp             HHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG-------GSSCSCCHHHHHHHHHHHHH-SSCCSCTTHHH
T ss_pred             HHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHhhc-ccccCcCCcHH
Confidence            77667799999999 67999999999999999987765431       12234566776666554321 11111122344


Q ss_pred             HHHHHHHHHHh
Q 013706          394 DPMLVNARENL  404 (438)
Q Consensus       394 ~~~~~~a~~~~  404 (438)
                      ..+++.|...+
T Consensus       375 i~ll~~a~~~~  385 (758)
T 3pxi_A          375 IDLIDEAGSKV  385 (758)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55566555443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.76  E-value=5.4e-19  Score=144.68  Aligned_cols=93  Identities=20%  Similarity=0.262  Sum_probs=89.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCC-CChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   80 (438)
                      ..|+||||+||. |+.+++++|++    .+++++.+|.. |+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        43 ~~g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  117 (136)
T 1d9s_A           43 RFGRRPIQVMMM-GSAQVAELLLL----HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL  117 (136)
T ss_dssp             TTCCTTTTTSTT-SCHHHHHHHHH----HTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHH
T ss_pred             CCCCCHHHHHHc-CCHHHHHHHHH----CCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence            468999999999 99999999999    78999999999 9999999999999999999999999999999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCC
Q 013706           81 SVWYSIRSEDYATVKTLLEYNAD  103 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~  103 (438)
                      |+    ..++.+++++|+++|+|
T Consensus       118 A~----~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          118 AE----EQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HH----HHTCHHHHHHHHHHHCC
T ss_pred             HH----HcCCHHHHHHHHHcCCC
Confidence            99    88999999999999875

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.76  E-value=1.3e-18  Score=167.47  Aligned_cols=125  Identities=24%  Similarity=0.263  Sum_probs=93.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCC---CCcccccCCCCcHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG---AFIEAKANNGMTPL   78 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L   78 (438)
                      ..|+||||+||..|+.++|++|++    .|++++..|..|+||||+|+..|+.+++++|++++   ++++..|..|.|||
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~----~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L  239 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMK----AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL  239 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHH----CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence            367888888888888888888888    57777888888888888888888888888888776   67777777777888


Q ss_pred             HHHhhcccccC---cHHHHHHHHhCCCCCcc--------cCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           79 HLSVWYSIRSE---DYATVKTLLEYNADCSA--------KDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        79 ~~A~~~~~~~~---~~~~~~~Ll~~ga~~~~--------~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      |+|+    ..+   +.+++++|+++|++++.        .|..|+||| |.|+..++.+++++|+..+
T Consensus       240 ~~A~----~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~L-h~A~~~g~~~~v~~Ll~~~  302 (373)
T 2fo1_E          240 MIVA----HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL-HYAAQVSNMPIVKYLVGEK  302 (373)
T ss_dssp             HHHH----HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH-HHHHSSCCHHHHHHHHHHS
T ss_pred             HHHH----HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHH-HHHHHhCCHHHHHHHHHhc
Confidence            7777    444   67777777777777765        456777777 4444556667777776543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.75  E-value=3.9e-18  Score=139.52  Aligned_cols=92  Identities=33%  Similarity=0.452  Sum_probs=87.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.+++++|++    .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        45 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A  120 (136)
T 2jab_A           45 EYGLTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS  120 (136)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHH
Confidence            368999999999999999999999    6899999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCC
Q 013706           82 VWYSIRSEDYATVKTLLEYN  101 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~g  101 (438)
                      +    ..++.+++++|+++|
T Consensus       121 ~----~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          121 I----GNGNEDLAEILQKLN  136 (136)
T ss_dssp             H----HTTCHHHHHHHHHC-
T ss_pred             H----HCCCHHHHHHHHHcC
Confidence            9    889999999999875

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.75  E-value=8.6e-18  Score=178.02  Aligned_cols=193  Identities=21%  Similarity=0.234  Sum_probs=126.9

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEE
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~  235 (438)
                      ..++.++|.+...+++.+++.                ...+.+++|+||||||||++|+++|+.+....   .....+++
T Consensus       167 ~~ld~viGr~~~i~~l~~~l~----------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~  230 (854)
T 1qvr_A          167 GKLDPVIGRDEEIRRVIQILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV  230 (854)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred             CCCcccCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence            467889999987777776532                23567899999999999999999999885421   12245788


Q ss_pred             Eeeccccc--ccccccchHHHHHHHHHcc----CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706          236 EVQRTDLV--GEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~----~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      .++++.+.  ..+.|+.+..+..+|..+.    ++||||||+|.+.+.....   ....+.+.|...++.+.+.+|++|+
T Consensus       231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~~~~~L~~~l~~~~i~~I~at~  307 (854)
T 1qvr_A          231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALARGELRLIGATT  307 (854)
T ss_dssp             EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHTTCCCEEEEEC
T ss_pred             EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chHHHHHHHHHHHhCCCeEEEEecC
Confidence            88888876  5688888888988888763    4699999999998654321   1234567788888889999999998


Q ss_pred             ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHH
Q 013706          310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE  379 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (438)
                      ...... +..+|+|++||. .+.|++|+.+++.+|++.++.....       .-...++++++..+....
T Consensus       308 ~~~~~~-~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~-------~~~~~i~~~al~~~~~ls  368 (854)
T 1qvr_A          308 LDEYRE-IEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEV-------HHGVRISDSAIIAAATLS  368 (854)
T ss_dssp             HHHHHH-HTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHH-------HTTCEECHHHHHHHHHHH
T ss_pred             chHHhh-hccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhh-------hcCCCCCHHHHHHHHHHH
Confidence            877655 566999999996 4999999999999999887765421       112335566666655543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.75  E-value=1e-17  Score=157.66  Aligned_cols=189  Identities=25%  Similarity=0.277  Sum_probs=133.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.+.+++.                ....++++|+||||||||++|+++++.+...+  ...+++.++
T Consensus        14 ~~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~--~~~~~~~~~   75 (319)
T 2chq_A           14 RTLDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIALARDLFGEN--WRDNFIEMN   75 (319)
T ss_dssp             SSGGGSCSCHHHHHHHHTTTT----------------TTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC--HHHHCEEEE
T ss_pred             CCHHHHhCCHHHHHHHHHHHh----------------CCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc--ccCCeEEEe
Confidence            357889999999888876532                12345699999999999999999999874221  112567777


Q ss_pred             cccccccccccchHHHHHHHH-----HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCCh
Q 013706          239 RTDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSE  311 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~-----~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~  311 (438)
                      +++..+.  ......+.....     ...+.||||||+|.+.+           ...+.|+..++.  ..+++|++++..
T Consensus        76 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~  142 (319)
T 2chq_A           76 ASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMYSKSCRFILSCNYV  142 (319)
T ss_dssp             TTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred             CccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence            7654321  111122222221     13468999999999975           344788888886  556777766543


Q ss_pred             hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccccc
Q 013706          312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  391 (438)
Q Consensus       312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~  391 (438)
                      .  .   ..|++++|+ ..+.|++|+.+++.+++...+.+..           ..++++++..+.. .+      .||.|
T Consensus       143 ~--~---l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~~-~~------~G~~r  198 (319)
T 2chq_A          143 S--R---IIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALIY-IS------GGDFR  198 (319)
T ss_dssp             G--G---SCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTC-----------CCBCHHHHHHHHH-TT------TTCHH
T ss_pred             h--h---cchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHH-Hc------CCCHH
Confidence            3  2   278899998 5899999999999999999887642           2357788887774 34      78888


Q ss_pred             chHHHHHHHHH
Q 013706          392 LVDPMLVNARE  402 (438)
Q Consensus       392 ~l~~~~~~a~~  402 (438)
                      .+.+.++.+..
T Consensus       199 ~~~~~l~~~~~  209 (319)
T 2chq_A          199 KAINALQGAAA  209 (319)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888887754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.75  E-value=1.3e-18  Score=162.29  Aligned_cols=107  Identities=21%  Similarity=0.214  Sum_probs=95.0

Q ss_pred             CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHH
Q 013706            3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH   79 (438)
Q Consensus         3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   79 (438)
                      .|+||||+||..   |+.+++++|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus       189 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~----~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~  264 (301)
T 2b0o_E          189 PEELVLHLAVKVANQASLPLVDFIIQ----NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD  264 (301)
T ss_dssp             CEECHHHHHHHTCCTTTHHHHHHHHH----HSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHH
T ss_pred             CCccHHHHHHHhcccCcHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            689999999997   89999999999    78999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCc
Q 013706           80 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS  124 (438)
Q Consensus        80 ~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~  124 (438)
                      +|+    ..++.+++++|+++|++      .|.||||+ |+..++
T Consensus       265 ~A~----~~~~~~iv~~Ll~~ga~------~g~tpLh~-A~~~g~  298 (301)
T 2b0o_E          265 IAR----KKHHKECEELLEQAQAG------TFAFPLHV-DYSWVI  298 (301)
T ss_dssp             HHH----HHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHH----HcCCHHHHHHHHHhcCC------CCCChhHH-HHhcCC
Confidence            999    88999999999998876      58999944 444443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.75  E-value=3.9e-17  Score=154.44  Aligned_cols=207  Identities=17%  Similarity=0.217  Sum_probs=136.7

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .+++.+|++.+++.+...+..-.   .+        ..++.+++|+||||||||++|+++|..++.       ++...++
T Consensus        23 ~l~~~~g~~~~~~~l~~~i~~~~---~~--------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-------~~~~~sg   84 (334)
T 1in4_A           23 SLDEFIGQENVKKKLSLALEAAK---MR--------GEVLDHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTSG   84 (334)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHH---HH--------TCCCCCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred             cHHHccCcHHHHHHHHHHHHHHH---hc--------CCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEec
Confidence            57888899888777776543221   11        135578999999999999999999998864       3333333


Q ss_pred             ccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-------------------
Q 013706          240 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------------------  299 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------------------  299 (438)
                      ..+.      ....+...+... ...|+||||++.+.+..           .+.|+..++.                   
T Consensus        85 ~~~~------~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~-----------~e~L~~~~~~~~~~i~~~~~~~~~~i~~~  147 (334)
T 1in4_A           85 PVLV------KQGDMAAILTSLERGDVLFIDEIHRLNKAV-----------EELLYSAIEDFQIDIMIGKGPSAKSIRID  147 (334)
T ss_dssp             TTCC------SHHHHHHHHHHCCTTCEEEEETGGGCCHHH-----------HHHHHHHHHTSCCCC--------------
T ss_pred             hHhc------CHHHHHHHHHHccCCCEEEEcchhhcCHHH-----------HHHHHHHHHhcccceeeccCccccccccc
Confidence            2221      123344444443 56899999999987521           2333333321                   


Q ss_pred             -CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706          300 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK  378 (438)
Q Consensus       300 -~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (438)
                       ..+.++.+++....     .++++++||...+.|++|+.+++.+|+++......           ..++++++..++..
T Consensus       148 l~~~~li~at~~~~~-----Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-----------~~~~~~~~~~ia~~  211 (334)
T 1in4_A          148 IQPFTLVGATTRSGL-----LSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-----------VEIEDAAAEMIAKR  211 (334)
T ss_dssp             -CCCEEEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHHHHHT
T ss_pred             CCCeEEEEecCCccc-----CCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHHHHHHHh
Confidence             13566666555432     27889999988899999999999999998876431           34667777777765


Q ss_pred             HhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          379 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       379 ~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      .       .|+.|.+.++++++...+..+         +...|+.+++.++++.+
T Consensus       212 ~-------~G~~R~a~~ll~~~~~~a~~~---------~~~~It~~~v~~al~~~  250 (334)
T 1in4_A          212 S-------RGTPRIAIRLTKRVRDMLTVV---------KADRINTDIVLKTMEVL  250 (334)
T ss_dssp             S-------TTCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHH
T ss_pred             c-------CCChHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHh
Confidence            4       577888889988887655211         12346666666666554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.74  E-value=3.5e-18  Score=162.13  Aligned_cols=127  Identities=26%  Similarity=0.275  Sum_probs=117.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccC-CCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      |.||||.||..|++++|++||+    .|+++|.++. .|+||||+|+..|+.+++++|+++|++++.++..+.++++.++
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  100 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA  100 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence            6899999999999999999999    7899999876 4999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR  139 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~  139 (438)
                          ..+...+...++..+++++..|..|.||+ +.++..+..+++++++..+++..
T Consensus       101 ----~~~~~~~~~~~~~~~~~~~~~d~~g~t~l-~~A~~~~~~~~~~~ll~~ga~~~  152 (337)
T 4g8k_A          101 ----IAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKFLYKRGANVN  152 (337)
T ss_dssp             ----HHTCHHHHHHHHTTTCCTTCBCTTCCBHH-HHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ----hcccchhhHHhhhccchhhhhccCCCCHH-HHHHHcCcHHHHHHHHHcCCCcc
Confidence                77889999999999999999999999999 66666788899999998887654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.74  E-value=4.7e-18  Score=166.29  Aligned_cols=197  Identities=15%  Similarity=0.171  Sum_probs=127.7

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH--c-cCcEEEEeCccccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--A-EGGILFVDEAYRLI  275 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a-~~~il~iDEid~l~  275 (438)
                      +.+++|+||||||||++|+++++.+....  ...+++.+++..+...+.+.........|..  . .+.||||||+|.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~  207 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLI  207 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHC--CSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccccc
Confidence            57899999999999999999999885431  1236788888777655443322211122322  2 56899999999998


Q ss_pred             CCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCC--cceeCCCCCHHHHHHHHHHHHhccc
Q 013706          276 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       276 ~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~--~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      .+.     .....++..+-...+.+..++++++++..  .+...+++|++||.  ..+.+++|+.+++.+|++..+... 
T Consensus       208 ~~~-----~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~-  279 (440)
T 2z4s_A          208 GKT-----GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE-  279 (440)
T ss_dssp             SCH-----HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH-
T ss_pred             CCh-----HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc-
Confidence            631     11122333333334556666665543222  11112788899995  789999999999999999988753 


Q ss_pred             cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706          354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  432 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~  432 (438)
                            ++    .++++++..++...       .||.|++.++++++...+...         + ..|+.+++.++++.
T Consensus       280 ------~~----~i~~e~l~~la~~~-------~gn~R~l~~~L~~~~~~a~~~---------~-~~It~~~~~~~l~~  331 (440)
T 2z4s_A          280 ------HG----ELPEEVLNFVAENV-------DDNLRRLRGAIIKLLVYKETT---------G-KEVDLKEAILLLKD  331 (440)
T ss_dssp             ------TC----CCCTTHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHS---------S-SCCCHHHHHHHTST
T ss_pred             ------CC----CCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHh---------C-CCCCHHHHHHHHHH
Confidence                  22    34556666666543       799999999999988766311         0 23556666655543

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.74  E-value=1.1e-18  Score=166.66  Aligned_cols=202  Identities=18%  Similarity=0.262  Sum_probs=149.4

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ..++|.+....++.+.+..+              +....+++++|++||||+++|++++.....     ...|+.++|+.
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~--------------a~~~~~vli~GesGtGKe~lAr~ih~~s~r-----~~~fv~vnc~~  189 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKI--------------AKSKAPVLITGESGTGKEIVARLIHRYSGR-----KGAFVDLNCAS  189 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHH--------------HTSCSCEEEECCTTSSHHHHHHHHHHHHCC-----CSCEEEEESSS
T ss_pred             ccccccchHHHHHHhhhhhh--------------hccchhheEEeCCCchHHHHHHHHHHhccc-----cCCcEEEEccc
Confidence            45778887777777665443              134567999999999999999999986643     22499999986


Q ss_pred             cc-----ccccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC---------
Q 013706          242 LV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------  300 (438)
Q Consensus       242 ~~-----~~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------  300 (438)
                      +.     +.++|+...       .....|+.|.+|+||||||+.+.+..|           ..|++.++++         
T Consensus       190 ~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q-----------~~Ll~~l~~~~~~~~g~~~  258 (368)
T 3dzd_A          190 IPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQ-----------AKLLRVLETGSFTRLGGNQ  258 (368)
T ss_dssp             SCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHH-----------HHHHHHHHHSEECCBTCCC
T ss_pred             CChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHH-----------HHHHHHHHhCCcccCCCCc
Confidence            43     334554221       123578899999999999999987444           8899988753         


Q ss_pred             ----CEEEEEecCChhHHHHhhh--CcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhcccccccccccc-ccccccHH
Q 013706          301 ----KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFK-LHSSCSMD  370 (438)
Q Consensus       301 ----~v~vi~~~~~~~~~~~~~~--~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~  370 (438)
                          ++.+|++|+.+....+...  .+.|..|+ ...|.+|++..  +++..++.+++.+...     ++. -...++++
T Consensus       259 ~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~-----~~~~~~~~~~~~  333 (368)
T 3dzd_A          259 KIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAK-----EYKKNCFELSEE  333 (368)
T ss_dssp             BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHH-----HTTCCCCCBCHH
T ss_pred             ceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHH-----HcCCCCCCcCHH
Confidence                4678999887776544211  13455577 34688999987  8999999999987653     222 22468999


Q ss_pred             HHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          371 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ++..+..+.|      |||.|+|+|++++++..+
T Consensus       334 a~~~L~~~~w------pGNvreL~n~i~~~~~~~  361 (368)
T 3dzd_A          334 TKEYLMKQEW------KGNVRELKNLIERAVILC  361 (368)
T ss_dssp             HHHHHHTCCC------TTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCC------CcHHHHHHHHHHHHHHhC
Confidence            9999999999      999999999999997654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.74  E-value=1.9e-17  Score=158.10  Aligned_cols=189  Identities=20%  Similarity=0.258  Sum_probs=128.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++.+++.+...+.                ...+++++|+||||||||++|+++++.+.... .....++.+++
T Consensus        35 ~~~~i~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~   97 (353)
T 1sxj_D           35 NLDEVTAQDHAVTVLKKTLK----------------SANLPHMLFYGPPGTGKTSTILALTKELYGPD-LMKSRILELNA   97 (353)
T ss_dssp             STTTCCSCCTTHHHHHHHTT----------------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH-HHTTSEEEECS
T ss_pred             CHHHhhCCHHHHHHHHHHHh----------------cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc-ccccceEEEcc
Confidence            57899999999888877632                22345699999999999999999999875320 01125677776


Q ss_pred             cccccc-ccccchHHHHHHHHH----------------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--C
Q 013706          240 TDLVGE-FVGHTGPKTRRRIKE----------------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--G  300 (438)
Q Consensus       240 ~~~~~~-~~g~~~~~~~~~~~~----------------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~  300 (438)
                      ++..+. .+.+   .+.. +..                ....||||||+|.+.+..           .+.|+..|++  .
T Consensus        98 ~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~-----------~~~Ll~~le~~~~  162 (353)
T 1sxj_D           98 SDERGISIVRE---KVKN-FARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA-----------QSALRRTMETYSG  162 (353)
T ss_dssp             SSCCCHHHHTT---HHHH-HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH-----------HHHHHHHHHHTTT
T ss_pred             ccccchHHHHH---HHHH-HhhhcccccchhhcccCCCCCceEEEEECCCccCHHH-----------HHHHHHHHHhcCC
Confidence            653211 1111   1111 111                234699999999997633           3677777764  2


Q ss_pred             CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706          301 KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  380 (438)
Q Consensus       301 ~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (438)
                      ...+|++++....     ..|++++|+ ..+.|++|+.+++..++...+.+..           ..++++++..+.... 
T Consensus       163 ~~~~il~~~~~~~-----l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~~~~-  224 (353)
T 1sxj_D          163 VTRFCLICNYVTR-----IIDPLASQC-SKFRFKALDASNAIDRLRFISEQEN-----------VKCDDGVLERILDIS-  224 (353)
T ss_dssp             TEEEEEEESCGGG-----SCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHHHHT-
T ss_pred             CceEEEEeCchhh-----CcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHc-
Confidence            3444444433221     278899998 5899999999999999998887532           235778888777765 


Q ss_pred             hHhhhccccccchHHHHHHHHHHh
Q 013706          381 TEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       381 ~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                            .||.|.+.++++.+...+
T Consensus       225 ------~G~~r~~~~~l~~~~~~~  242 (353)
T 1sxj_D          225 ------AGDLRRGITLLQSASKGA  242 (353)
T ss_dssp             ------SSCHHHHHHHHHHTHHHH
T ss_pred             ------CCCHHHHHHHHHHHHHhc
Confidence                  478888888888776543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.74  E-value=3e-17  Score=154.85  Aligned_cols=200  Identities=15%  Similarity=0.103  Sum_probs=131.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH--ccCcEEEEeCccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLI  275 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~il~iDEid~l~  275 (438)
                      .+.+++|+||||||||++|+++++.+...    ..+++.+++.++...+.+.........|..  ..++||||||+|.+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~  111 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR----GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS  111 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHT----TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc
Confidence            46789999999999999999999988643    237888888877665544332221122221  247899999999987


Q ss_pred             CCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCC--cceeCCCCCHHHHHHHHHHHHhccc
Q 013706          276 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT  353 (438)
Q Consensus       276 ~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~--~~i~~~~~~~~e~~~il~~~l~~~~  353 (438)
                      .++     .....++..+-...+.+..++++++++.. . +...+++|++||.  ..+.|++ +.+++.+|++.++.+..
T Consensus       112 ~~~-----~~~~~l~~~l~~~~~~~~~iii~~~~~~~-~-l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~  183 (324)
T 1l8q_A          112 GKE-----RTQIEFFHIFNTLYLLEKQIILASDRHPQ-K-LDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN  183 (324)
T ss_dssp             TCH-----HHHHHHHHHHHHHHHTTCEEEEEESSCGG-G-CTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTT
T ss_pred             CCh-----HHHHHHHHHHHHHHHCCCeEEEEecCChH-H-HHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcC
Confidence            531     11122333333334456666665543322 1 1123888999995  7899999 99999999999987532


Q ss_pred             cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhc-cHHHHHHHHHH
Q 013706          354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI-TLEDLEAGLKL  432 (438)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i-~~~d~~~a~~~  432 (438)
                                 ..++++++..+...       . ||.|++.++++++.... ..+..    ..+...| +.+++.+++..
T Consensus       184 -----------~~l~~~~l~~l~~~-------~-g~~r~l~~~l~~~~~~~-~~~l~----~~~~~~i~t~~~i~~~~~~  239 (324)
T 1l8q_A          184 -----------LELRKEVIDYLLEN-------T-KNVREIEGKIKLIKLKG-FEGLE----RKERKERDKLMQIVEFVAN  239 (324)
T ss_dssp             -----------CCCCHHHHHHHHHH-------C-SSHHHHHHHHHHHHHHC-HHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             -----------CCCCHHHHHHHHHh-------C-CCHHHHHHHHHHHHHcC-HHHhc----cccccCCCCHHHHHHHHHH
Confidence                       34567777776654       2 67899999998887650 00000    1234567 88898888775


Q ss_pred             H
Q 013706          433 L  433 (438)
Q Consensus       433 ~  433 (438)
                      .
T Consensus       240 ~  240 (324)
T 1l8q_A          240 Y  240 (324)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.74  E-value=1.9e-18  Score=163.29  Aligned_cols=112  Identities=26%  Similarity=0.336  Sum_probs=99.0

Q ss_pred             CCCCcHHHHHHHcCC---HHHHHHHhcCCCCCCcccccccCCCChHHHHHHH----cCCHHHHHHHHHCCC---------
Q 013706            2 QMAQTPLHVSAGYNK---AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK----NGCNEAAKLLLAHGA---------   65 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~g~---------   65 (438)
                      ..|+||||+|+..|+   .++++.|+++   ..++++.+|..|+||||+|+.    .|+.+++++|++.++         
T Consensus       162 ~~g~TpLh~A~~~g~~~~~~~~~~ll~~---~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~  238 (327)
T 1sw6_A          162 NMGESCLVKAVKSVNNYDSGTFEALLDY---LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR  238 (327)
T ss_dssp             TTCCCHHHHHHHSSHHHHTTCHHHHHHH---HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGC
T ss_pred             CCCCCHHHHHHHhcccccHHHHHHHHHh---hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccch
Confidence            369999999999998   7888888873   236799999999999999999    899999999998743         


Q ss_pred             ------------------------------------CcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCC
Q 013706           66 ------------------------------------FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN  109 (438)
Q Consensus        66 ------------------------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~  109 (438)
                                                          ++|.+|..|+||||+|+    ..|+.+++++|+++|++++.+|.
T Consensus       239 ~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~----~~g~~~~v~~Ll~~Gad~~~~d~  314 (327)
T 1sw6_A          239 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA----RLGNISIVDALLDYGADPFIANK  314 (327)
T ss_dssp             CEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHH----HHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCcccCC
Confidence                                                57888999999999999    88999999999999999999999


Q ss_pred             CCCcccccccc
Q 013706          110 EGKTPLDHLSN  120 (438)
Q Consensus       110 ~g~t~l~~~a~  120 (438)
                      .|+||||+++.
T Consensus       315 ~G~TpL~~A~~  325 (327)
T 1sw6_A          315 SGLRPVDFGAG  325 (327)
T ss_dssp             TSCCGGGGTCC
T ss_pred             CCCCHHHHHHh
Confidence            99999955443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.73  E-value=6.9e-18  Score=132.63  Aligned_cols=87  Identities=30%  Similarity=0.416  Sum_probs=71.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      +|+||||+||..|+.+++++|++    .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~----~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMA----NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            67788888888888888888887    57778888888888888888888888888888888888888888888888888


Q ss_pred             hcccccCcHHHHHHH
Q 013706           83 WYSIRSEDYATVKTL   97 (438)
Q Consensus        83 ~~~~~~~~~~~~~~L   97 (438)
                          ..++.+++++|
T Consensus        99 ----~~~~~~~~~~L  109 (110)
T 2zgd_A           99 ----DNGNEDLAEIL  109 (110)
T ss_dssp             ----HHTCHHHHHHH
T ss_pred             ----HcCCHHHHHHh
Confidence                67788887765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.73  E-value=1.4e-17  Score=133.83  Aligned_cols=94  Identities=47%  Similarity=0.655  Sum_probs=90.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+..|+.+++++|++    .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        33 ~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A  108 (126)
T 1n0r_A           33 KNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA  108 (126)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            368999999999999999999999    6889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCC
Q 013706           82 VWYSIRSEDYATVKTLLEYNAD  103 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~  103 (438)
                      +    ..++.+++++|+++|++
T Consensus       109 ~----~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          109 A----RNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             H----HTTCHHHHHHHHHHTCC
T ss_pred             H----HcCcHHHHHHHHHcCCC
Confidence            9    88999999999999986

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.72  E-value=1e-17  Score=154.29  Aligned_cols=94  Identities=28%  Similarity=0.303  Sum_probs=90.2

Q ss_pred             CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHH
Q 013706            3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH   79 (438)
Q Consensus         3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   79 (438)
                      .|+||||+||..   |+.+++++|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus       168 ~g~t~Lh~A~~~~~~~~~~~v~~Ll~----~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~  243 (278)
T 1dcq_A          168 PDETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD  243 (278)
T ss_dssp             TTCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcchHHHHhcccchHHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHH
Confidence            689999999999   89999999999    78999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCcHHHHHHHHhCCCCC
Q 013706           80 LSVWYSIRSEDYATVKTLLEYNADC  104 (438)
Q Consensus        80 ~A~~~~~~~~~~~~~~~Ll~~ga~~  104 (438)
                      +|+    ..|+.+++++|+++|++.
T Consensus       244 ~A~----~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          244 IAK----RLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHH----HTTCHHHHHHHHHHHTTC
T ss_pred             HHH----HcCCHHHHHHHHHcCCCC
Confidence            999    889999999999998853

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.72  E-value=3.6e-17  Score=157.98  Aligned_cols=229  Identities=14%  Similarity=0.118  Sum_probs=147.8

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ++++|.+...+.+.+++....            ....+..++|+||||||||++++.+++.+...... ...++.+++..
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~------------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~i~~~~   86 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLY------------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHVYINTRQ   86 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGG------------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEEEEEHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHH------------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEECCC
Confidence            678999988888887644321            12356789999999999999999999988542100 22566777543


Q ss_pred             cc------cc----------ccccchHH-HHH---HHHHcc-CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc---
Q 013706          242 LV------GE----------FVGHTGPK-TRR---RIKEAE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM---  297 (438)
Q Consensus       242 ~~------~~----------~~g~~~~~-~~~---~~~~a~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~---  297 (438)
                      ..      ..          ..|.+... ...   .+.... +.||||||++.+.....       ...+..|+..+   
T Consensus        87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~  159 (386)
T 2qby_A           87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV  159 (386)
T ss_dssp             HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc
Confidence            21      11          11222222 222   222222 57999999999986431       04556777666   


Q ss_pred             cCCCEEEEEecCChhHHHHhhhCcCccCCCC-cceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHH
Q 013706          298 DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI  376 (438)
Q Consensus       298 ~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~-~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (438)
                      ....+.+|++++..+....  .++.+.+||. ..+.|++|+.+++.+++...+.+..        . ...++.+++..+.
T Consensus       160 ~~~~~~~I~~~~~~~~~~~--~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--------~-~~~~~~~~~~~l~  228 (386)
T 2qby_A          160 NKSKISFIGITNDVKFVDL--LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--------K-PGVLPDNVIKLCA  228 (386)
T ss_dssp             CC--EEEEEEESCGGGGGG--CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--------C-SSCSCHHHHHHHH
T ss_pred             CCCeEEEEEEECCCChHhh--hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--------c-CCCCCHHHHHHHH
Confidence            4567888888876654221  2677888885 5899999999999999998876421        0 1245667776666


Q ss_pred             HHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          377 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       377 ~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      ....    ...||.+.+.++++.+...+..         .+...|+.+|+..+++.+.
T Consensus       229 ~~~~----~~~G~~r~~~~ll~~a~~~a~~---------~~~~~i~~~~v~~a~~~~~  273 (386)
T 2qby_A          229 ALAA----REHGDARRALDLLRVSGEIAER---------MKDTKVKEEYVYMAKEEIE  273 (386)
T ss_dssp             HHHH----HTTCCHHHHHHHHHHHHHHHHH---------TTCSSCCHHHHHHHHHHHH
T ss_pred             HHHH----HhcCCHHHHHHHHHHHHHHHHh---------cCCCccCHHHHHHHHHHHh
Confidence            6543    1128888888898888766521         1234688888888877654

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.72  E-value=4.3e-17  Score=153.92  Aligned_cols=188  Identities=25%  Similarity=0.312  Sum_probs=129.7

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++.+++.+..++..                ...++++|+||||||||++|+++++.+...+  ....++.+++
T Consensus        23 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~--~~~~~~~~~~   84 (327)
T 1iqp_A           23 RLDDIVGQEHIVKRLKHYVKT----------------GSMPHLLFAGPPGVGKTTAALALARELFGEN--WRHNFLELNA   84 (327)
T ss_dssp             STTTCCSCHHHHHHHHHHHHH----------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGG--HHHHEEEEET
T ss_pred             CHHHhhCCHHHHHHHHHHHHc----------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCc--ccCceEEeec
Confidence            478899999999988876431                1345799999999999999999999875321  1124667776


Q ss_pred             ccccccccccchHHHHHHHH-----HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChh
Q 013706          240 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP  312 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~-----~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~  312 (438)
                      ++..+.  ......+.....     .+.++||||||+|.+.+           ...+.|+..++.  ..+++|++++...
T Consensus        85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~~  151 (327)
T 1iqp_A           85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMFSSNVRFILSCNYSS  151 (327)
T ss_dssp             TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence            553221  011111222111     13468999999999975           334777777764  4556666654433


Q ss_pred             HHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccc
Q 013706          313 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL  392 (438)
Q Consensus       313 ~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  392 (438)
                      .     ..|++.+|+. .+.|++|+.+++.+++...+.+..           ..++++++..+....       .||.|.
T Consensus       152 ~-----l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~-------~g~~r~  207 (327)
T 1iqp_A          152 K-----IIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEG-----------LELTEEGLQAILYIA-------EGDMRR  207 (327)
T ss_dssp             G-----SCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTT-----------CEECHHHHHHHHHHH-------TTCHHH
T ss_pred             c-----cCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHC-------CCCHHH
Confidence            2     2778888984 899999999999999998887642           235677887777654       688888


Q ss_pred             hHHHHHHHHH
Q 013706          393 VDPMLVNARE  402 (438)
Q Consensus       393 l~~~~~~a~~  402 (438)
                      +.++++.+..
T Consensus       208 ~~~~l~~~~~  217 (327)
T 1iqp_A          208 AINILQAAAA  217 (327)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            8888887653

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.72  E-value=8.2e-18  Score=139.08  Aligned_cols=138  Identities=16%  Similarity=0.159  Sum_probs=95.8

Q ss_pred             hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706          163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  242 (438)
Q Consensus       163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~  242 (438)
                      +++|.+...+.+.+.+..+              +....+++|+||||||||++|+++++...    ....+|+ ++++.+
T Consensus         2 ~iiG~s~~~~~~~~~~~~~--------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~v-~~~~~~   62 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQL--------------SETDIAVWLYGAPGTGRMTGARYLHQFGR----NAQGEFV-YRELTP   62 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHH--------------TTCCSCEEEESSTTSSHHHHHHHHHHSST----TTTSCCE-EEECCT
T ss_pred             CceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCCHHHHHHHHHHhCC----ccCCCEE-EECCCC
Confidence            5688888877777765544              24567899999999999999999998542    2344788 888876


Q ss_pred             cccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhh--
Q 013706          243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIA--  318 (438)
Q Consensus       243 ~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~--  318 (438)
                      ...      ......++.+.+++|||||+|.+.+..|           ..|+..|+.  .++.+|++|+.+....+..  
T Consensus        63 ~~~------~~~~~~~~~a~~g~l~ldei~~l~~~~q-----------~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~  125 (145)
T 3n70_A           63 DNA------PQLNDFIALAQGGTLVLSHPEHLTREQQ-----------YHLVQLQSQEHRPFRLIGIGDTSLVELAASNH  125 (145)
T ss_dssp             TTS------SCHHHHHHHHTTSCEEEECGGGSCHHHH-----------HHHHHHHHSSSCSSCEEEEESSCHHHHHHHSC
T ss_pred             Ccc------hhhhcHHHHcCCcEEEEcChHHCCHHHH-----------HHHHHHHhhcCCCEEEEEECCcCHHHHHHcCC
Confidence            544      3456778889999999999999986433           667776654  4577888887765543211  


Q ss_pred             hCcCccCCC-CcceeCCCC
Q 013706          319 SNEGFCRRV-TKFFHFNDF  336 (438)
Q Consensus       319 ~~p~l~~R~-~~~i~~~~~  336 (438)
                      ..+.|..|+ ...|.+|++
T Consensus       126 ~~~~L~~rl~~~~i~lPpL  144 (145)
T 3n70_A          126 IIAELYYCFAMTQIACLPL  144 (145)
T ss_dssp             CCHHHHHHHHHHEEECCCC
T ss_pred             CCHHHHHHhcCCEEeCCCC
Confidence            134445565 335667765

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.71  E-value=1.9e-16  Score=149.11  Aligned_cols=184  Identities=24%  Similarity=0.265  Sum_probs=127.8

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .+++++|++.+++.+.+++.                ....++++|+||||||||++|+.+++.+...+.  ...++.+++
T Consensus        19 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~   80 (323)
T 1sxj_B           19 VLSDIVGNKETIDRLQQIAK----------------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY--ADGVLELNA   80 (323)
T ss_dssp             SGGGCCSCTHHHHHHHHHHH----------------SCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH--HHHEEEECT
T ss_pred             CHHHHHCCHHHHHHHHHHHH----------------cCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc--cCCEEEecC
Confidence            57889999999998887743                123445999999999999999999998742110  114666666


Q ss_pred             ccccccccccchHHHHHHHHH----------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEe
Q 013706          240 TDLVGEFVGHTGPKTRRRIKE----------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA  307 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~----------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~  307 (438)
                      ++..+      ...++..++.          .+..||||||+|.+..           ...+.|+..++.  ..+++|++
T Consensus        81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~il~  143 (323)
T 1sxj_B           81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMELYSNSTRFAFA  143 (323)
T ss_dssp             TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHHTTTTEEEEEE
T ss_pred             ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhccCCCceEEEE
Confidence            54321      1223333321          2357999999999975           234667777764  44566666


Q ss_pred             cCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcc
Q 013706          308 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  387 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (438)
                      ++...  .   ..|++++|+ ..+.|++|+.+++.+++...+.+..           ..++++++..+....       .
T Consensus       144 ~~~~~--~---l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~-------~  199 (323)
T 1sxj_B          144 CNQSN--K---IIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLED-----------VKYTNDGLEAIIFTA-------E  199 (323)
T ss_dssp             ESCGG--G---SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHHHHH-------T
T ss_pred             eCChh--h---chhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------C
Confidence            54432  2   278889998 5999999999999999998886532           235667777777654       6


Q ss_pred             ccccchHHHHHHHHH
Q 013706          388 MNGGLVDPMLVNARE  402 (438)
Q Consensus       388 ~n~~~l~~~~~~a~~  402 (438)
                      ||.|.+.+.++.+..
T Consensus       200 G~~r~a~~~l~~~~~  214 (323)
T 1sxj_B          200 GDMRQAINNLQSTVA  214 (323)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            788888888887763

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.70  E-value=7.2e-18  Score=170.54  Aligned_cols=246  Identities=17%  Similarity=0.157  Sum_probs=141.7

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ..++|++.+++.+.-.+..-    ..+.... .......++||+||||||||++|+++|+.+........   ...++..
T Consensus       295 ~~I~G~e~vk~al~~~l~~g----~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~---~~~~~~~  366 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGG----VPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG---KGSTAAG  366 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCC----CCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT---TCSTTTT
T ss_pred             chhcChHHHHHHHHHHHhCC----CcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC---Ccccccc
Confidence            46889998877664321000    0000000 01123348999999999999999999987642111100   0012222


Q ss_pred             cccccccc----chHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC---------------E
Q 013706          242 LVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------V  302 (438)
Q Consensus       242 ~~~~~~g~----~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------v  302 (438)
                      +.......    ........+..|.+||+||||+|++.+.           ..+.|++.|+++.               +
T Consensus       367 l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~  435 (595)
T 3f9v_A          367 LTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARA  435 (595)
T ss_dssp             SEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred             ccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence            22221111    0001123566788999999999999874           4488888887643               4


Q ss_pred             EEEEecCChh--HH------HHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccc-------------
Q 013706          303 VVIFAGYSEP--MK------RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-------------  361 (438)
Q Consensus       303 ~vi~~~~~~~--~~------~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~-------------  361 (438)
                      .||+|+++..  ++      .-+..+++|++|||..+.+.++..++...|+++.+...........+             
T Consensus       436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar  515 (595)
T 3f9v_A          436 AVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR  515 (595)
T ss_dssp             EEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred             EEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence            5788877642  00      00123899999998665554444433777777777643210000000             


Q ss_pred             -cccccccHHHHHHHHHHHhhHh--------hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706          362 -KLHSSCSMDAIAALIEKETTEK--------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  432 (438)
Q Consensus       362 -~~~~~~~~~~~~~~~~~~~~~~--------~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~  432 (438)
                       .+.+.+++++...+...+..-.        ...+++.|.+.+++..|...|..+.         ...|+.+|+.+|+..
T Consensus       516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~---------~~~V~~~dv~~Ai~l  586 (595)
T 3f9v_A          516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL---------KAEVTREDAERAINI  586 (595)
T ss_dssp             HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS---------SCCSSHHHHHHHHHH
T ss_pred             HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHH
Confidence             1133455555566666543100        1237888999999998877774432         256999999999987


Q ss_pred             HHh
Q 013706          433 LLR  435 (438)
Q Consensus       433 ~~~  435 (438)
                      +..
T Consensus       587 ~~~  589 (595)
T 3f9v_A          587 MRL  589 (595)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.70  E-value=5.4e-16  Score=149.15  Aligned_cols=188  Identities=17%  Similarity=0.197  Sum_probs=130.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC-------
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-------  232 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~-------  232 (438)
                      .|++++|++.+.+.+...+..               ...+..++|+||||||||++|+++++.+.........       
T Consensus        14 ~~~~~vg~~~~~~~L~~~l~~---------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~   78 (373)
T 1jr3_A           14 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN   78 (373)
T ss_dssp             STTTSCSCHHHHHHHHHHHHH---------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred             chhhccCcHHHHHHHHHHHHh---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence            578899999999888876431               1233458999999999999999999988532211111       


Q ss_pred             ----------CEEEeecccccccccccchHHHHHHHHHcc-------CcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706          233 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-------GGILFVDEAYRLIPMQKADDKDYGIEALEEIMS  295 (438)
Q Consensus       233 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-------~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~  295 (438)
                                .++.+++...      .....++.+++.+.       +.||||||+|.+..           ..++.|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~  141 (373)
T 1jr3_A           79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK  141 (373)
T ss_dssp             HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHH
T ss_pred             HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHH
Confidence                      1223322210      11223555555542       47999999999864           34578888


Q ss_pred             hccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706          296 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  373 (438)
Q Consensus       296 ~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~  373 (438)
                      .+++  ..+++|++++....     ..+++++|+ ..+.|++|+.+++.+++..++.+..           ..++++++.
T Consensus       142 ~le~~~~~~~~Il~~~~~~~-----l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~a~~  204 (373)
T 1jr3_A          142 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ  204 (373)
T ss_dssp             HHHSCCSSEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHH
T ss_pred             HHhcCCCceEEEEEeCChHh-----CcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH
Confidence            8876  45677776654432     267788898 8999999999999999999887642           235667777


Q ss_pred             HHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          374 ALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      .+....       .||.+.+.++++++...
T Consensus       205 ~l~~~~-------~G~~r~~~~~l~~~~~~  227 (373)
T 1jr3_A          205 LLARAA-------EGSLRDALSLTDQAIAS  227 (373)
T ss_dssp             HHHHHS-------SSCHHHHHHHHHHHHHH
T ss_pred             HHHHHC-------CCCHHHHHHHHHHHHHh
Confidence            776654       78889999999887644

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.70  E-value=4.2e-17  Score=129.10  Aligned_cols=102  Identities=38%  Similarity=0.542  Sum_probs=94.7

Q ss_pred             cccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccc
Q 013706           36 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL  115 (438)
Q Consensus        36 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l  115 (438)
                      .+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+    ..++.+++++|+++|++++..|..|+|||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl   79 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA----KNGHAEIVKLLLAKGADVNARSKDGNTPE   79 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHH----TTTCHHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence            46889999999999999999999999999999999999999999999    88999999999999999999999999999


Q ss_pred             cccccCCCchhHHHHHHhccchHHHHH
Q 013706          116 DHLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus       116 ~~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                       +.|+..+..+++++|+..+++.....
T Consensus        80 -~~A~~~~~~~~~~~Ll~~ga~~n~~~  105 (115)
T 2l6b_A           80 -HLAKKNGHHEIVKLLDAKGADVNARS  105 (115)
T ss_dssp             -HHHHTTTCHHHHHHHHTTSSSHHHHS
T ss_pred             -HHHHHCCCHHHHHHHHHcCCCCCcCC
Confidence             66666789999999999998877654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.70  E-value=1.6e-17  Score=147.76  Aligned_cols=104  Identities=24%  Similarity=0.276  Sum_probs=83.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.++|++|+++   .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus       104 ~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  180 (222)
T 3ehr_A          104 KAGSTALYWACHGGHKDIVEMLFTQ---PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA  180 (222)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHcC---CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHh
Confidence            4699999999999999999999993   3899999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCC
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGK  112 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~  112 (438)
                      +    ..++.++++.|+..++.....+..++
T Consensus       181 ~----~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          181 T----NAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             C----SHHHHHHHC-----------------
T ss_pred             c----chhHHHHHHHHhccchhhhccchhhh
Confidence            9    78899999999999999888776553

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.69  E-value=4.3e-17  Score=133.38  Aligned_cols=105  Identities=27%  Similarity=0.345  Sum_probs=93.8

Q ss_pred             CcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCC
Q 013706           31 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE  110 (438)
Q Consensus        31 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~  110 (438)
                      |+++ .+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+    ..++.+++++|+++|++++..|..
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~   75 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC----NHGHLKVVELLLQHKALVNTTGYQ   75 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCGG
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCcccCcCCC
Confidence            3456 67889999999999999999999999999999999999999999999    889999999999999999999999


Q ss_pred             CCccccccccCCCchhHHHHHHhccchHHHH
Q 013706          111 GKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus       111 g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      |+||| |.|+..++.+++++|+..+++....
T Consensus        76 g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~  105 (137)
T 3c5r_A           76 NDSPL-HDAAKNGHVDIVKLLLSYGASRNAV  105 (137)
T ss_dssp             GCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCCHH-HHHHHcCCHHHHHHHHHcCCCCCCC
Confidence            99999 6666678899999999888775544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.69  E-value=1.9e-18  Score=165.46  Aligned_cols=124  Identities=15%  Similarity=0.107  Sum_probs=103.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCc---ccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCc---ccccCCCCc
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKV---ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI---EAKANNGMT   76 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t   76 (438)
                      +++||||+||..|+.++|++|+++    ++   ..+..+..|.||||+|+..|+.+++++|+++|+++   +..+.+ +|
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~----ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~T  165 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLL----LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YH  165 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC------CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHc----CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CC
Confidence            457999999999999999999994    43   22234456889999999999999999999999862   333333 89


Q ss_pred             HHHHHhhcccccCcHHHHHHHHhCCCCCcc--cCCCCCcccccccc-CCCchhHHHHHHhccc
Q 013706           77 PLHLSVWYSIRSEDYATVKTLLEYNADCSA--KDNEGKTPLDHLSN-GPGSAKLRELLLWHSE  136 (438)
Q Consensus        77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~--~d~~g~t~l~~~a~-~~~~~~~~~lL~~~~~  136 (438)
                      |||+||    ..|+.+++++|+++|++++.  .|..|+||| +.|+ ..++.+++++|+..++
T Consensus       166 pLh~Aa----~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL-~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          166 AFRLAA----ENGHLHVLNRLCELAPTEATAMIQAENYYAF-RWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHHHH----HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHH-HHHHSTTCCHHHHHHHTTSHH
T ss_pred             HHHHHH----HCCCHHHHHHHHHcCCccchhccCCCCCCHH-HHHHHHCCCHHHHHHHHhCCC
Confidence            999999    89999999999999999887  889999999 5555 7899999999998664

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.69  E-value=7.3e-16  Score=149.05  Aligned_cols=228  Identities=18%  Similarity=0.212  Sum_probs=146.4

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ++++|.+...+.+.+++.....       +   ....+++++|+||||||||++++.+++.+....   ...++.+++..
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~i~~~~   83 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYINGFI   83 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEETTT
T ss_pred             CCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc---CeeEEEEeCcc
Confidence            6789999988888877553310       0   011223899999999999999999999875421   23677777654


Q ss_pred             ccc------c---cc-------ccchHHH----HHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-
Q 013706          242 LVG------E---FV-------GHTGPKT----RRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-  299 (438)
Q Consensus       242 ~~~------~---~~-------g~~~~~~----~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-  299 (438)
                      ...      .   .+       |.....+    ...+... .+.||||||+|.+.+           ..+..|+..++. 
T Consensus        84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~-----------~~~~~L~~~~~~~  152 (389)
T 1fnn_A           84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAP-----------DILSTFIRLGQEA  152 (389)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCH-----------HHHHHHHHHTTCH
T ss_pred             CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccch-----------HHHHHHHHHHHhC
Confidence            221      1   11       1112222    2222222 356999999999832           556777777754 


Q ss_pred             -----CCEEEEEecCChhHHHHhhhCcCccCCCCc-ceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706          300 -----GKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  373 (438)
Q Consensus       300 -----~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~-~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~  373 (438)
                           ..+.+|++++.......  .++.+.+||.. .+.|++|+.+++.+++...+.....         ...++++++.
T Consensus       153 ~~~~~~~~~iI~~~~~~~~~~~--l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~  221 (389)
T 1fnn_A          153 DKLGAFRIALVIVGHNDAVLNN--LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA---------EGSYSEDILQ  221 (389)
T ss_dssp             HHHSSCCEEEEEEESSTHHHHT--SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC---------TTSSCHHHHH
T ss_pred             CCCCcCCEEEEEEECCchHHHH--hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC---------CCCCCHHHHH
Confidence                 47778877665543322  27778889854 8999999999999999998864210         1246778888


Q ss_pred             HHHHHHhhHh--hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          374 ALIEKETTEK--QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       374 ~~~~~~~~~~--~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      .+....++..  ....|+.|.+.++++.|...+..+         +...++.+|+.++++.+
T Consensus       222 ~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~---------~~~~i~~~~v~~~~~~~  274 (389)
T 1fnn_A          222 MIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN---------GRKHIAPEDVRKSSKEV  274 (389)
T ss_dssp             HHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT---------TCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence            8887764110  001477888999998887765221         12346666776666554

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.68  E-value=1.7e-17  Score=143.17  Aligned_cols=160  Identities=16%  Similarity=0.262  Sum_probs=110.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEE
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~  235 (438)
                      ..+++++|.+...+.+.+.+.                ...+.+++|+||||||||++|+.+++.+.....   ....+++
T Consensus        19 ~~~~~~~g~~~~~~~l~~~l~----------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~   82 (187)
T 2p65_A           19 GKLDPVIGRDTEIRRAIQILS----------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV   82 (187)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred             cccchhhcchHHHHHHHHHHh----------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence            357889999987777766532                134678999999999999999999998853111   1233666


Q ss_pred             Eeeccccc--ccccccchHHHHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706          236 EVQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      .++...+.  ..+.|.....+..++...    .+.+|||||+|.+.+.+...+  ....+.+.|...++.+.+++|++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~ii~~~~  160 (187)
T 2p65_A           83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLARGELRCIGATT  160 (187)
T ss_dssp             EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHHTTCSCEEEEEC
T ss_pred             EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHhcCCeeEEEecC
Confidence            66666554  224454455555555443    346999999999986543111  0113446667777788899999988


Q ss_pred             ChhHHHHhhhCcCccCCCCcceeCCCCC
Q 013706          310 SEPMKRVIASNEGFCRRVTKFFHFNDFN  337 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~  337 (438)
                      ..........+|++++||. .+.+++|+
T Consensus       161 ~~~~~~~~~~~~~l~~R~~-~i~i~~p~  187 (187)
T 2p65_A          161 VSEYRQFIEKDKALERRFQ-QILVEQPS  187 (187)
T ss_dssp             HHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred             HHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence            7776655556899999996 59999885

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.68  E-value=1.8e-18  Score=142.63  Aligned_cols=133  Identities=15%  Similarity=0.188  Sum_probs=93.3

Q ss_pred             hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706          163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  242 (438)
Q Consensus       163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~  242 (438)
                      +++|.+...+++.+.+...              ...+.+++|+||||||||++|+++++...        +++.++++.+
T Consensus         5 ~~iG~s~~~~~l~~~~~~~--------------~~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~   62 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAA--------------AKRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEY   62 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHH--------------HTCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTH
T ss_pred             CceeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhC
Confidence            4678888888887775543              13457899999999999999999987432        7888888876


Q ss_pred             cccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC---CCEEEEEecCChhHHH-Hhh
Q 013706          243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKR-VIA  318 (438)
Q Consensus       243 ~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~v~vi~~~~~~~~~~-~~~  318 (438)
                      ...+       ....++.+.+++|||||+|.+.+..|           ..|++.+++   .++.+|++++.+.... -- 
T Consensus        63 ~~~~-------~~~~~~~a~~~~l~lDei~~l~~~~q-----------~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-  123 (143)
T 3co5_A           63 LIDM-------PMELLQKAEGGVLYVGDIAQYSRNIQ-----------TGITFIIGKAERCRVRVIASCSYAAGSDGIS-  123 (143)
T ss_dssp             HHHC-------HHHHHHHTTTSEEEEEECTTCCHHHH-----------HHHHHHHHHHTTTTCEEEEEEEECTTTC--C-
T ss_pred             ChHh-------hhhHHHhCCCCeEEEeChHHCCHHHH-----------HHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-
Confidence            5543       56778899999999999999976433           667777764   4578888876543221 00 


Q ss_pred             hCcCccCCC-CcceeCCCC
Q 013706          319 SNEGFCRRV-TKFFHFNDF  336 (438)
Q Consensus       319 ~~p~l~~R~-~~~i~~~~~  336 (438)
                      .++.|..|+ ...|.+|++
T Consensus       124 ~~~~L~~rl~~~~i~lPpL  142 (143)
T 3co5_A          124 CEEKLAGLFSESVVRIPPL  142 (143)
T ss_dssp             HHHHHHHHSSSEEEEECCC
T ss_pred             ccHHHHHHhcCcEEeCCCC
Confidence            134556676 456777765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.68  E-value=6.8e-17  Score=129.56  Aligned_cols=77  Identities=30%  Similarity=0.384  Sum_probs=74.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.+++++|++    .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        38 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           38 EGGRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             TTSSCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            369999999999999999999999    7899999999999999999999999999999999999999999999999998


Q ss_pred             h
Q 013706           82 V   82 (438)
Q Consensus        82 ~   82 (438)
                      +
T Consensus       114 ~  114 (123)
T 3aaa_C          114 D  114 (123)
T ss_dssp             C
T ss_pred             C
Confidence            6

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.67  E-value=1.2e-16  Score=147.27  Aligned_cols=125  Identities=22%  Similarity=0.279  Sum_probs=115.8

Q ss_pred             CCCCcHHHHHH-----HcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCc
Q 013706            2 QMAQTPLHVSA-----GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT   76 (438)
Q Consensus         2 ~~g~tpLh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t   76 (438)
                      ..|+||||+|+     ..++.+++++|++    .|.+.+..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+|
T Consensus       143 ~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~----~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~T  218 (276)
T 4hbd_A          143 RAGYSPIMLTALATLKTQDDIETVLQLFR----LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGST  218 (276)
T ss_dssp             TTSCCHHHHGGGCCCCSHHHHHHHHHHHH----HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCHHHHHHHHHhhhhhhHHHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Confidence            47999999999     6689999999999    67888888999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           77 PLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        77 ~L~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      |||+|+    ..|+.+++++|++ .|++++..|..|+||| +.|+..++.+++++|+...
T Consensus       219 pLh~A~----~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL-~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          219 ALMCAC----EHGHKEIAGLLLAVPSCDISLTDRDGSTAL-MVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHH----HHTCHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHH----HCCCHHHHHHHHhcCCCCCcCcCCCCCCHH-HHHHHcCCHHHHHHHHhcc
Confidence            999999    8899999999999 8999999999999999 6666678899999998654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.67  E-value=6.4e-16  Score=147.59  Aligned_cols=196  Identities=19%  Similarity=0.216  Sum_probs=125.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC----------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI----------  228 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----------  228 (438)
                      ..|++++|++.+.+.+..++.               .....++++|+||||||||++++++++.+.....          
T Consensus        11 ~~~~~~vg~~~~~~~l~~~~~---------------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~   75 (354)
T 1sxj_E           11 KSLNALSHNEELTNFLKSLSD---------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF   75 (354)
T ss_dssp             CSGGGCCSCHHHHHHHHTTTT---------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred             CCHHHhcCCHHHHHHHHHHHh---------------hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence            357899999998888876530               1223445999999999999999999997632111          


Q ss_pred             ------------cCCCCEEEeeccccccccccc-chHHHHHHHHHc-----------------cCcEEEEeCcccccCCC
Q 013706          229 ------------LPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-----------------EGGILFVDEAYRLIPMQ  278 (438)
Q Consensus       229 ------------~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~a-----------------~~~il~iDEid~l~~~~  278 (438)
                                  .....++.++.++.     +. ....+++.++..                 .+.||+|||++.+.+  
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~--  148 (354)
T 1sxj_E           76 VTASNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK--  148 (354)
T ss_dssp             ----------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH--
T ss_pred             cccccccceeeeecccceEEecHhhc-----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH--
Confidence                        00112233332221     11 111233433321                 345999999999754  


Q ss_pred             CCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccc
Q 013706          279 KADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDS  356 (438)
Q Consensus       279 ~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~  356 (438)
                               ...+.|+..++.  ....+|++++....     ..|++++|+ ..+.|++|+.+++.++++..+.++    
T Consensus       149 ---------~~~~~L~~~le~~~~~~~~Il~t~~~~~-----l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~----  209 (354)
T 1sxj_E          149 ---------DAQAALRRTMEKYSKNIRLIMVCDSMSP-----IIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNE----  209 (354)
T ss_dssp             ---------HHHHHHHHHHHHSTTTEEEEEEESCSCS-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH----
T ss_pred             ---------HHHHHHHHHHHhhcCCCEEEEEeCCHHH-----HHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHc----
Confidence                     233556666553  33455555443221     267889999 899999999999999999988764    


Q ss_pred             cccccccccccc-HHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhcccc
Q 013706          357 LLYGFKLHSSCS-MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLS  409 (438)
Q Consensus       357 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~  409 (438)
                         +.    .++ ++++..++...       .||.|.+.++++.+.......+.
T Consensus       210 ---~~----~~~~~~~l~~i~~~~-------~G~~r~a~~~l~~~~~~~~~~i~  249 (354)
T 1sxj_E          210 ---RI----QLETKDILKRIAQAS-------NGNLRVSLLMLESMALNNELALK  249 (354)
T ss_dssp             ---TC----EECCSHHHHHHHHHH-------TTCHHHHHHHHTHHHHTTTTEEC
T ss_pred             ---CC----CCCcHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhCCCCcC
Confidence               22    345 67777777654       78899999999988765432343

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.66  E-value=6.9e-17  Score=139.20  Aligned_cols=106  Identities=27%  Similarity=0.309  Sum_probs=91.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   80 (438)
                      ..|+||||+||..|+.+++++|++    .|+++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        74 ~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  149 (183)
T 3deo_A           74 ENGRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL  149 (183)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHH
Confidence            479999999999999999999999    789999998 889999999999999999999999999999999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW  133 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~  133 (438)
                      |+..    ++                 ...+.+++ ..++..+..+++++|..
T Consensus       150 A~~~----~~-----------------~~~~~~~l-~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          150 AREI----LK-----------------TTPKGNPM-QFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             HHHH----HH-----------------TCCCCSHH-HHHHHHHHHHHHHHHHT
T ss_pred             HHHh----cc-----------------CcccccHH-HHHHHcCHHHHHHHHHH
Confidence            9832    11                 13467888 44555677888888764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.66  E-value=1.8e-16  Score=151.24  Aligned_cols=106  Identities=25%  Similarity=0.313  Sum_probs=88.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+||..|+.++|++|++    .|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~----~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A  308 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQ----NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA  308 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHH
Confidence            468999999999999999999999    7899999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCC---CCCcccCCCCCccc
Q 013706           82 VWYSIRSEDYATVKTLLEYN---ADCSAKDNEGKTPL  115 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~g---a~~~~~d~~g~t~l  115 (438)
                      +    ..++.+++++|+..+   ++....+..+.|++
T Consensus       309 ~----~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l  341 (368)
T 3jue_A          309 M----ETANADIVTLLRLAKMREAEAAQGQAGDETYL  341 (368)
T ss_dssp             H----HTTCHHHHHHHHHHHC----------------
T ss_pred             H----HCCCHHHHHHHHHcCCCcccccccCCCCCCHH
Confidence            9    889999999999765   33334556677777

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.66  E-value=1.5e-16  Score=161.98  Aligned_cols=148  Identities=14%  Similarity=0.188  Sum_probs=99.1

Q ss_pred             HHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------------------CEEEEEecCChh
Q 013706          256 RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEP  312 (438)
Q Consensus       256 ~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~v~vi~~~~~~~  312 (438)
                      ..+..|.+++|||||++.+.+           .+.+.|++.|+++                       ++.||++|+++.
T Consensus       195 g~~~~a~~gvL~LDEi~~l~~-----------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~  263 (604)
T 3k1j_A          195 GMIHRAHKGVLFIDEIATLSL-----------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT  263 (604)
T ss_dssp             CHHHHTTTSEEEETTGGGSCH-----------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH
T ss_pred             ceeeecCCCEEEEechhhCCH-----------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH
Confidence            456778899999999999865           3447788777632                       456888888775


Q ss_pred             HHHHhhhCcCccCCCC---cceeCCCC---CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh--
Q 013706          313 MKRVIASNEGFCRRVT---KFFHFNDF---NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ--  384 (438)
Q Consensus       313 ~~~~~~~~p~l~~R~~---~~i~~~~~---~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  384 (438)
                      ...+   +|+|++||.   ..+.|+..   +.+.+..+++.+......      ......++++++..++.+++....  
T Consensus       264 ~~~l---~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~ls~eAl~~Li~~~~r~~g~r  334 (604)
T 3k1j_A          264 VDKM---HPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKR------DGKIPHFTKEAVEEIVREAQKRAGRK  334 (604)
T ss_dssp             HHHS---CHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHH------HCSSCCBBHHHHHHHHHHHHHTTCST
T ss_pred             Hhhc---CHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhh------ccCcccCCHHHHHHHHHHHhhhhccc
Confidence            5544   999999995   46666543   345566666544433210      012246789999999998862211  


Q ss_pred             -hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706          385 -RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  432 (438)
Q Consensus       385 -~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~  432 (438)
                       .-+.|.|++.++++.|...+..         .....|+.+|+.+|++.
T Consensus       335 ~~l~~~~R~l~~llr~A~~~A~~---------~~~~~I~~edv~~A~~~  374 (604)
T 3k1j_A          335 GHLTLRLRDLGGIVRAAGDIAVK---------KGKKYVEREDVIEAVKM  374 (604)
T ss_dssp             TEEECCHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHHHHHHHh---------cCcccccHHHHHHHHHh
Confidence             1234789999999988665522         12346888888888753

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.64  E-value=2.7e-16  Score=123.42  Aligned_cols=95  Identities=37%  Similarity=0.475  Sum_probs=82.6

Q ss_pred             cccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCC
Q 013706           32 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG  111 (438)
Q Consensus        32 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g  111 (438)
                      ......|.+|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+    ..++.+++++|+++|++++.+|..|
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g   90 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA----RNGHLEVVKLLLEAGADVXAQDKFG   90 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccccCC
Confidence            345667889999999999999999999999999999999999999999999    8899999999999999999999999


Q ss_pred             CccccccccCCCchhHHHHH
Q 013706          112 KTPLDHLSNGPGSAKLRELL  131 (438)
Q Consensus       112 ~t~l~~~a~~~~~~~~~~lL  131 (438)
                      +||| +.|+..++.+++++|
T Consensus        91 ~tpl-~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAF-DISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHH-HHHHHHTCHHHHHHH
T ss_pred             CcHH-HHHHHcCCHHHHHHh
Confidence            9999 666667788888776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.64  E-value=2.3e-17  Score=157.92  Aligned_cols=123  Identities=11%  Similarity=0.028  Sum_probs=103.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcc---cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccc--ccCCCCcH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE---LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA--KANNGMTP   77 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~   77 (438)
                      .|+||||+||.+|+.++|++|++    .|++   .+..+.. +||||+|+..|+.+++++|+++|++++.  .|..|.||
T Consensus       127 ~~~tpL~~Aa~~G~~eiv~~Ll~----~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~Tp  201 (376)
T 2aja_A          127 ENYQAFRLAAENGHLHVLNRLCE----LAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA  201 (376)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH----SCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh----CCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCH
Confidence            36789999999999999999999    5643   2222223 9999999999999999999999999887  89999999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      ||+|+.   ..|+.+++++|++.|+       .|.||+ +.|+..++.+++++|...+++...+
T Consensus       202 L~~Aa~---~~G~~eiv~~Ll~~ga-------~~~taL-~~Aa~~g~~evv~lL~~~ga~~~~~  254 (376)
T 2aja_A          202 FRWAAV---GRGHHNVINFLLDCPV-------MLAYAE-IHEFEYGEKYVNPFIARHVNRLKEM  254 (376)
T ss_dssp             HHHHHS---TTCCHHHHHHHTTSHH-------HHHHHH-HCTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHH---HCCCHHHHHHHHhCCC-------ccchHH-HHHHHCCCHHHHHHHHhcCcccccc
Confidence            999981   3689999999998764       389999 6666678888999999988776554

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.63  E-value=2.9e-15  Score=142.07  Aligned_cols=183  Identities=22%  Similarity=0.283  Sum_probs=120.3

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.+...+.                ....+|++|+||||||||++|+++++.+.....  ...+.+++
T Consensus        22 ~~~~~~~g~~~~~~~L~~~i~----------------~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~~~~   83 (340)
T 1sxj_C           22 ETLDEVYGQNEVITTVRKFVD----------------EGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY--SNMVLELN   83 (340)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHH----------------TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH--HHHEEEEC
T ss_pred             CcHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc--cceEEEEc
Confidence            357889999988888877643                123456999999999999999999998853110  11355666


Q ss_pred             cccccccccccchHHHHHHH---HH------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEe
Q 013706          239 RTDLVGEFVGHTGPKTRRRI---KE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA  307 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~---~~------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~  307 (438)
                      .++..+      ...++..+   .+      ....|++|||+|.+...           ..+.|+..++.  ....+|++
T Consensus        84 ~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~~~~~~il~  146 (340)
T 1sxj_C           84 ASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-----------AQNALRRVIERYTKNTRFCVL  146 (340)
T ss_dssp             TTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHTTTTEEEEEE
T ss_pred             Cccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhcCCCCeEEEEE
Confidence            554211      12222222   21      12589999999999753           33667777764  34445555


Q ss_pred             cCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcc
Q 013706          308 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  387 (438)
Q Consensus       308 ~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (438)
                      ++...  .   ..|++++|+ ..+.|++++.+++.+++...+.+..           ..++++++..+....       .
T Consensus       147 ~n~~~--~---i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~-----------~~i~~~~~~~i~~~s-------~  202 (340)
T 1sxj_C          147 ANYAH--K---LTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEK-----------LKLSPNAEKALIELS-------N  202 (340)
T ss_dssp             ESCGG--G---SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCBCHHHHHHHHHHH-------T
T ss_pred             ecCcc--c---cchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------C
Confidence            44322  2   278899998 5899999999999999998886532           235566666666543       5


Q ss_pred             ccccchHHHHHHH
Q 013706          388 MNGGLVDPMLVNA  400 (438)
Q Consensus       388 ~n~~~l~~~~~~a  400 (438)
                      |+.|.+.++++.+
T Consensus       203 G~~r~~~~~l~~~  215 (340)
T 1sxj_C          203 GDMRRVLNVLQSC  215 (340)
T ss_dssp             TCHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHH
Confidence            6666666665544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.62  E-value=8.7e-16  Score=138.69  Aligned_cols=107  Identities=28%  Similarity=0.323  Sum_probs=93.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   80 (438)
                      ..|+||||+||..|+.++|++|++    .|+++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        75 ~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~  150 (244)
T 3ui2_A           75 ENGRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL  150 (244)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            369999999999999999999999    789999998 789999999999999999999999999999999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                      |+..                     .....+.||+ +.++..++.+++++|...
T Consensus       151 A~~~---------------------~~~~~~~~~l-~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          151 AREI---------------------LKTTPKGNPM-QFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHH---------------------HTTCCCSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHH---------------------HhccCCCCHH-HHHHHcChHHHHHHHHHh
Confidence            9821                     1125678999 555567788888888865

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.58  E-value=3.4e-16  Score=154.08  Aligned_cols=151  Identities=16%  Similarity=0.212  Sum_probs=94.5

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec--
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR--  239 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~--  239 (438)
                      ..++|++.+++.+...+.                  ...++||+||||||||++|+++|+.+..     ..+|....+  
T Consensus        22 ~~ivGq~~~i~~l~~al~------------------~~~~VLL~GpPGtGKT~LAraLa~~l~~-----~~~f~~~~~~~   78 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAAL------------------SGESVFLLGPPGIAKSLIARRLKFAFQN-----ARAFEYLMTRF   78 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHH------------------HTCEEEEECCSSSSHHHHHHHGGGGBSS-----CCEEEEECCTT
T ss_pred             hhhHHHHHHHHHHHHHHh------------------cCCeeEeecCchHHHHHHHHHHHHHHhh-----hhHHHHHHHhc
Confidence            457899998877665421                  2469999999999999999999986632     123333333  


Q ss_pred             ---ccccccccccchHHHHHHHHHc------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC---------
Q 013706          240 ---TDLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------  301 (438)
Q Consensus       240 ---~~~~~~~~g~~~~~~~~~~~~a------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------  301 (438)
                         +++++.+.+..... ...|..+      .++|||||||+.+.+           .+.+.|++.|+++.         
T Consensus        79 ~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-----------~~q~~LL~~lee~~v~i~G~~~~  146 (500)
T 3nbx_X           79 STPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERQFRNGAHVEK  146 (500)
T ss_dssp             CCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCH-----------HHHHHHHHHHHSSEEECSSSEEE
T ss_pred             CCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-----------HHHHHHHHHHHHHhccCCCCcCC
Confidence               23333322221111 2233322      245899999988765           45588999987532         


Q ss_pred             ---EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCH-HHHHHHHHHHH
Q 013706          302 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKM  349 (438)
Q Consensus       302 ---v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~-~e~~~il~~~l  349 (438)
                         .++|+||++-+-.  ....+++++||...+.+++|+. +++.+|++...
T Consensus       147 ~~~~~iI~ATN~lpe~--~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~  196 (500)
T 3nbx_X          147 IPMRLLVAASNELPEA--DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ  196 (500)
T ss_dssp             CCCCEEEEEESSCCCT--TCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred             cchhhhhhccccCCCc--cccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence               2456666532110  0013488999999999999997 77888887654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.51  E-value=2.4e-13  Score=128.40  Aligned_cols=131  Identities=11%  Similarity=0.100  Sum_probs=89.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-----------------CCEEEeecccccccccccchHHHHHHHHHc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA  261 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a  261 (438)
                      +..+||+||||||||++|+++|+.+........                 ..+..+.+.+- +.  ......++.+++.+
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~~  100 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEKL  100 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHHT
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHHH
Confidence            445999999999999999999998864321110                 12333333210 00  01223456666654


Q ss_pred             -------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCccee
Q 013706          262 -------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFH  332 (438)
Q Consensus       262 -------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~  332 (438)
                             ...|++|||+|.+..           ...+.|+..+++  ..+++|++++...  .+   .|++++|+ ..+.
T Consensus       101 ~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep~~~~~~Il~t~~~~--~l---~~ti~SRc-~~~~  163 (334)
T 1a5t_A          101 NEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEPPAETWFFLATREPE--RL---LATLRSRC-RLHY  163 (334)
T ss_dssp             TSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSCCTTEEEEEEESCGG--GS---CHHHHTTS-EEEE
T ss_pred             hhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEeCChH--hC---cHHHhhcc-eeee
Confidence                   247999999999975           445899999987  3466666554432  22   78899998 7899


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 013706          333 FNDFNSEELAKILHIKM  349 (438)
Q Consensus       333 ~~~~~~~e~~~il~~~l  349 (438)
                      |++|+.+++.+++....
T Consensus       164 ~~~~~~~~~~~~L~~~~  180 (334)
T 1a5t_A          164 LAPPPEQYAVTWLSREV  180 (334)
T ss_dssp             CCCCCHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHhc
Confidence            99999999999887654

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.50  E-value=3.6e-13  Score=131.15  Aligned_cols=218  Identities=13%  Similarity=0.088  Sum_probs=127.4

Q ss_pred             hhhcChHHHHHHHHHHH-HHhhhHHHHHhcCCCCCCCCCCceEE--ecCCCCCHHHHHHHHHHHHHHcC--CcCCCCEEE
Q 013706          162 SNIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGARRPPHMAF--LGNPGTGKTMVARILGRLLYMVG--ILPTDRVTE  236 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll--~GppGtGKT~la~~la~~l~~~~--~~~~~~~~~  236 (438)
                      +.++|.+...+++.+.+ ....       .+  . ...+..+++  +||||||||++++.+++.+....  ......++.
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~-------~~--~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~   91 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLL-------SG--A-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY   91 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHH-------TS--S-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCChHHHHHHHHHHHhHHHh-------cC--C-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence            56889998888887765 4321       00  0 024567899  99999999999999999875310  000114555


Q ss_pred             eeccc------cccc---cc-------ccchH----HHHHHHHH-ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706          237 VQRTD------LVGE---FV-------GHTGP----KTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS  295 (438)
Q Consensus       237 ~~~~~------~~~~---~~-------g~~~~----~~~~~~~~-a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~  295 (438)
                      +++..      +...   .+       |....    .+...+.. .++.||||||+|.+...+..     ...++..|+.
T Consensus        92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~~~~l~~l~~  166 (412)
T 1w5s_A           92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----AAEDLYTLLR  166 (412)
T ss_dssp             EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----CHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----chHHHHHHHH
Confidence            55422      1111   11       11111    22223332 23579999999999753110     1134444444


Q ss_pred             hcc-----C--CCEEEEEecCChhHH-HHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccc
Q 013706          296 VMD-----G--GKVVVIFAGYSEPMK-RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC  367 (438)
Q Consensus       296 ~~~-----~--~~v~vi~~~~~~~~~-~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~  367 (438)
                      .++     +  ..+.+|++++...+. .+....+.+.+||...+.|++++.++..+++...+....       .  ...+
T Consensus       167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-------~--~~~~  237 (412)
T 1w5s_A          167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-------R--DTVW  237 (412)
T ss_dssp             HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-------C--TTSC
T ss_pred             HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-------C--CCCC
Confidence            443     4  677788776544333 331111667777766699999999999999988776421       0  1235


Q ss_pred             cHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          368 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      +++++..+..... ......||.+.+.+++..+...+
T Consensus       238 ~~~~~~~i~~~~~-~~~~~~G~p~~~~~l~~~a~~~a  273 (412)
T 1w5s_A          238 EPRHLELISDVYG-EDKGGDGSARRAIVALKMACEMA  273 (412)
T ss_dssp             CHHHHHHHHHHHC-GGGTSCCCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHH-HhccCCCcHHHHHHHHHHHHHHH
Confidence            6666666666542 00000178888888888776554

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.48  E-value=9.2e-14  Score=128.78  Aligned_cols=126  Identities=12%  Similarity=0.054  Sum_probs=90.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc-------CcEEEEeCc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-------GGILFVDEA  271 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-------~~il~iDEi  271 (438)
                      .+++|||||||||||++|+++++.+..+.. ....++.+++++   ..  ..-..++.+++.+.       ..|+||||+
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~-~~~d~~~l~~~~---~~--~~id~ir~li~~~~~~p~~~~~kvviIdea   91 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPP-KASDVLEIDPEG---EN--IGIDDIRTIKDFLNYSPELYTRKYVIVHDC   91 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCC-CTTTEEEECCSS---SC--BCHHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhc-cCCCEEEEcCCc---CC--CCHHHHHHHHHHHhhccccCCceEEEeccH
Confidence            568999999999999999999986532211 234566666542   01  12234666666552       379999999


Q ss_pred             ccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706          272 YRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM  349 (438)
Q Consensus       272 d~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l  349 (438)
                      |.|..           ...|.|+..|++  ...++|++++...  .+   .|++++|   +++|++|+.+++.+++...+
T Consensus        92 d~lt~-----------~a~naLLk~LEep~~~t~fIl~t~~~~--kl---~~tI~SR---~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A           92 ERMTQ-----------QAANAFLKALEEPPEYAVIVLNTRRWH--YL---LPTIKSR---VFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             GGBCH-----------HHHHHTHHHHHSCCTTEEEEEEESCGG--GS---CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred             HHhCH-----------HHHHHHHHHHhCCCCCeEEEEEECChH--hC---hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence            99975           345899999987  3555555543321  22   7899999   99999999999999998876

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=99.39  E-value=1e-12  Score=125.62  Aligned_cols=238  Identities=16%  Similarity=0.114  Sum_probs=134.5

Q ss_pred             hHHHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHH-HHHHHHcCCcCC
Q 013706          153 KMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARIL-GRLLYMVGILPT  231 (438)
Q Consensus       153 ~~~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~l-a~~l~~~~~~~~  231 (438)
                      ..+.+...+..+.|++.+|..+.-.+-.          |.. ..+...|+||.|+||| ||++|+++ ++.+..      
T Consensus       204 ~~~~l~~sIapI~G~e~vK~aLll~L~G----------G~~-k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR------  265 (506)
T 3f8t_A          204 PLTTFARAIAPLPGAEEVGKMLALQLFS----------CVG-KNSERLHVLLAGYPVV-CSEILHHVLDHLAPR------  265 (506)
T ss_dssp             HHHHHHHHHCCSTTCHHHHHHHHHHHTT----------CCS-SGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS------
T ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHcC----------Ccc-ccCCceeEEEECCCCh-HHHHHHHHHHHhCCC------
Confidence            3445555666689999887776643210          000 0123348999999999 99999999 774421      


Q ss_pred             CCEEEeecc---cccccccccc-hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706          232 DRVTEVQRT---DLVGEFVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------  300 (438)
Q Consensus       232 ~~~~~~~~~---~~~~~~~g~~-~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------  300 (438)
                      ..+.....+   .+.....+.+ ...-...+..|.+||+||||++.+.+           ..+..|++.|+++       
T Consensus       266 ~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~-----------~~qsaLlEaMEe~~VtI~G~  334 (506)
T 3f8t_A          266 GVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPE-----------PHRWALMEAMDKGTVTVDGI  334 (506)
T ss_dssp             EEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCCH-----------HHHHHHHHHHHHSEEEETTE
T ss_pred             eEEecCCCCCccCceEEEEcCCCcccCCCeeEEcCCCeeehHhhhhCCH-----------HHHHHHHHHHhCCcEEECCE
Confidence            111111111   1111110000 01112456788999999999999987           4558999999864       


Q ss_pred             ----CEEEEEecCChhHH------HHhhhCcCccCCCCcceeC-CCCCHHHH---------HHHHHHHHhcccccccccc
Q 013706          301 ----KVVVIFAGYSEPMK------RVIASNEGFCRRVTKFFHF-NDFNSEEL---------AKILHIKMNNQTEDSLLYG  360 (438)
Q Consensus       301 ----~v~vi~~~~~~~~~------~~~~~~p~l~~R~~~~i~~-~~~~~~e~---------~~il~~~l~~~~~~~~~~~  360 (438)
                          .+.||+|+|+....      .-+...+++++|||..+.+ +.|+.++-         .+.++.+..--.      .
T Consensus       335 ~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar------~  408 (506)
T 3f8t_A          335 ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAI------R  408 (506)
T ss_dssp             EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHH------H
T ss_pred             EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHH------h
Confidence                46788887765411      0113367899999775543 44443221         122222222110      0


Q ss_pred             ccccccccHHHHHHHHHHHhhHh-----------hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHH
Q 013706          361 FKLHSSCSMDAIAALIEKETTEK-----------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG  429 (438)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a  429 (438)
                      ..+.+.+++++...+...+....           ...+...|.+..++.-|...|..+.         ...|+++|+.+|
T Consensus       409 ~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g---------R~~V~~eDV~~A  479 (506)
T 3f8t_A          409 EHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL---------SDDVEPEDVDIA  479 (506)
T ss_dssp             HCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT---------CSEECHHHHHHH
T ss_pred             cCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC---------cCCCCHHHHHHH
Confidence            12246677777766666554211           1123445777788776666653332         357899999999


Q ss_pred             HHHHH
Q 013706          430 LKLLL  434 (438)
Q Consensus       430 ~~~~~  434 (438)
                      +..+.
T Consensus       480 i~L~~  484 (506)
T 3f8t_A          480 AELVD  484 (506)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98775

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=99.10  E-value=3.4e-10  Score=124.53  Aligned_cols=149  Identities=13%  Similarity=0.126  Sum_probs=96.4

Q ss_pred             HHHHHHhhhcChHHHHHHHHHHHHHhhhHHHH--------HhcCCC---------------CC-CCCCCc--eEEecCCC
Q 013706          156 ELENELSNIVGLHELKIQLRKWAKGMLLDERR--------KALGLK---------------VG-ARRPPH--MAFLGNPG  209 (438)
Q Consensus       156 ~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~--------~~~~~~---------------~~-~~~~~~--~ll~GppG  209 (438)
                      .....|+++.|.+.+|+.+.+.+.+... ...        ++.+..               ++ ...|++  +++|||||
T Consensus      1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A         1014 ASGSSTGSMSAIDENKQKALAAALGQIE-KQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHH-HHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred             cCCceeeecCCccHHHHHHHHHHHHHHh-hccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence            3447899999999999998776554431 111        112211               11 224555  99999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc------------cccccc----chHHHHHHHHHc---cCcEEEEeC
Q 013706          210 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV------------GEFVGH----TGPKTRRRIKEA---EGGILFVDE  270 (438)
Q Consensus       210 tGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------------~~~~g~----~~~~~~~~~~~a---~~~il~iDE  270 (438)
                      ||||++|++++.+....    ..+.+.++.....            ++|+++    +++.++.++..|   ..+++|+||
T Consensus      1093 ~GKT~la~~~~~~~~~~----g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~ 1168 (1706)
T 3cmw_A         1093 SGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 1168 (1706)
T ss_dssp             SSHHHHHHHHHHHHHHT----TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESC
T ss_pred             CChHHHHHHHHHHhhhc----CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCc
Confidence            99999999999988653    2354445544422            678888    788888888744   569999999


Q ss_pred             cccccCCCC-----CC-CchhHHHHHHHHHhhccC----CCEEEEEecC
Q 013706          271 AYRLIPMQK-----AD-DKDYGIEALEEIMSVMDG----GKVVVIFAGY  309 (438)
Q Consensus       271 id~l~~~~~-----~~-~~~~~~~~~~~ll~~~~~----~~v~vi~~~~  309 (438)
                      +++|.|.+.     ++ +.....++++++|+.|+.    ..|+||+++.
T Consensus      1169 ~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n~ 1217 (1706)
T 3cmw_A         1169 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1217 (1706)
T ss_dssp             GGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             hHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEecc
Confidence            999999732     11 124556789999999987    7888886653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.05  E-value=2.6e-10  Score=130.77  Aligned_cols=139  Identities=17%  Similarity=0.147  Sum_probs=88.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc-----------------
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-----------------  261 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-----------------  261 (438)
                      ..++||+||||||||++|+.+....      ....++.++.+...+      ...+.+.++..                 
T Consensus      1267 ~~~vLL~GPpGtGKT~la~~~l~~~------~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~ 1334 (2695)
T 4akg_A         1267 KRGIILCGPPGSGKTMIMNNALRNS------SLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSD 1334 (2695)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHSC------SSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhcC------CCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCC
Confidence            4689999999999999995554321      122555666554332      12233333321                 


Q ss_pred             -cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhh---ccC--------CCEEEEEecCChhHHHHhhhCcCccCCCCc
Q 013706          262 -EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTK  329 (438)
Q Consensus       262 -~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~  329 (438)
                       +.+||||||++.-...+.+  .....++++++++.   ++.        .++.+|+|+++...-.....+|+++||| .
T Consensus      1335 gk~~VlFiDEinmp~~d~yg--~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~ 1411 (2695)
T 4akg_A         1335 IKNLVLFCDEINLPKLDKYG--SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-A 1411 (2695)
T ss_dssp             SSCEEEEEETTTCSCCCSSS--CCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-E
T ss_pred             CceEEEEecccccccccccC--chhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-e
Confidence             1269999999875444332  23344666666543   121        2478888887653000111289999999 8


Q ss_pred             ceeCCCCCHHHHHHHHHHHHhcc
Q 013706          330 FFHFNDFNSEELAKILHIKMNNQ  352 (438)
Q Consensus       330 ~i~~~~~~~~e~~~il~~~l~~~  352 (438)
                      +|.++.|+.+++..|+..++...
T Consensus      1412 vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A         1412 ILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp             EEECCCCTTTHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999888643

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.04  E-value=7.3e-09  Score=98.05  Aligned_cols=159  Identities=15%  Similarity=0.118  Sum_probs=94.2

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ..++|.+...+.+.+.+..                  ...++++||+|+|||++++.+++...         .+.+++..
T Consensus        12 ~~~~gR~~el~~L~~~l~~------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~---------~~~~~~~~   64 (350)
T 2qen_A           12 EDIFDREEESRKLEESLEN------------------YPLTLLLGIRRVGKSSLLRAFLNERP---------GILIDCRE   64 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHH------------------CSEEEEECCTTSSHHHHHHHHHHHSS---------EEEEEHHH
T ss_pred             HhcCChHHHHHHHHHHHhc------------------CCeEEEECCCcCCHHHHHHHHHHHcC---------cEEEEeec
Confidence            4578888877777765321                  15799999999999999999987541         23333221


Q ss_pred             c------------cc---ccc-----------------c-------cchHHHHHHHHH----ccCcEEEEeCcccccCCC
Q 013706          242 L------------VG---EFV-----------------G-------HTGPKTRRRIKE----AEGGILFVDEAYRLIPMQ  278 (438)
Q Consensus       242 ~------------~~---~~~-----------------g-------~~~~~~~~~~~~----a~~~il~iDEid~l~~~~  278 (438)
                      .            ..   ..+                 |       .....+-..+..    ..+.+|+|||++.+....
T Consensus        65 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~  144 (350)
T 2qen_A           65 LYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG  144 (350)
T ss_dssp             HHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC
Confidence            1            00   000                 0       011112122221    137899999999987511


Q ss_pred             CCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhH-HHH---hhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhc
Q 013706          279 KADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN  351 (438)
Q Consensus       279 ~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~-~~~---~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~  351 (438)
                      . ...   ...+..|...++. ..+.+|+++..... ..+   .....++..|+...+.+++++.+|..+++...+..
T Consensus       145 ~-~~~---~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~  218 (350)
T 2qen_A          145 S-RGG---KELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE  218 (350)
T ss_dssp             T-TTT---HHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             c-cch---hhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence            0 001   1233333333332 46777777766543 333   12234566677679999999999999999887654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.99  E-value=1.7e-09  Score=92.26  Aligned_cols=101  Identities=23%  Similarity=0.262  Sum_probs=56.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH-HcCCcCCCCEEEeecccccccccccchH-HHHHHHHH-ccCcEEEEeCcccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHTGP-KTRRRIKE-AEGGILFVDEAYRL  274 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~-a~~~il~iDEid~l  274 (438)
                      ...+++|+||||||||+++++++..+. ..+.    .++.++..++...+...... .....++. ....+|+|||++..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~  112 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI----RGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE  112 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC----CCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence            457899999999999999999999885 3232    33445555544332111000 00012222 25689999999854


Q ss_pred             cCCCCCCCchhHHHHHHHHHhhcc-CCCEEEEEecC
Q 013706          275 IPMQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGY  309 (438)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~ll~~~~-~~~v~vi~~~~  309 (438)
                      ..      +......+..++.... .+. .+|++|+
T Consensus       113 ~~------~~~~~~~l~~ll~~~~~~~~-~ii~tsn  141 (180)
T 3ec2_A          113 RL------SDWQRELISYIITYRYNNLK-STIITTN  141 (180)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             cC------CHHHHHHHHHHHHHHHHcCC-CEEEEcC
Confidence            22      2333345555554443 344 4444443

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.97  E-value=1.2e-09  Score=95.18  Aligned_cols=72  Identities=19%  Similarity=0.104  Sum_probs=47.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccccc----chHHHHHHHHHccCcEEEEeCcccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRL  274 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~a~~~il~iDEid~l  274 (438)
                      +.+++|+||||||||++|+++++.+...+    .+++.++++++...+...    ........+.  ...+|||||++..
T Consensus        54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~  127 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANELAKRN----VSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE  127 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHTTT----CCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence            37899999999999999999999886433    356667776654433211    1112222222  2369999999775


Q ss_pred             cC
Q 013706          275 IP  276 (438)
Q Consensus       275 ~~  276 (438)
                      ..
T Consensus       128 ~~  129 (202)
T 2w58_A          128 AM  129 (202)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=98.91  E-value=4.2e-09  Score=99.69  Aligned_cols=161  Identities=8%  Similarity=-0.056  Sum_probs=108.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDE  270 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDE  270 (438)
                      .++.+|||||+|+||++.++.+++.+...+... ...+.++         |  ...++++++.+       ...|++|||
T Consensus        17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~---------~--~~~~~~l~~~~~~~plf~~~kvvii~~   84 (343)
T 1jr3_D           17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE-HHTFSID---------P--NTDWNAIFSLCQAMSLFASRQTLLLLL   84 (343)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCE-EEEEECC---------T--TCCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCe-eEEEEec---------C--CCCHHHHHHHhcCcCCccCCeEEEEEC
Confidence            356789999999999999999999876433110 0111221         1  12334444433       357999999


Q ss_pred             ccc-ccCCCCCCCchhHHHHHHHHHhhccC---CCEEEEEecCChhH---HHHhhhCcCccCCCCcceeCCCCCHHHHHH
Q 013706          271 AYR-LIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPM---KRVIASNEGFCRRVTKFFHFNDFNSEELAK  343 (438)
Q Consensus       271 id~-l~~~~~~~~~~~~~~~~~~ll~~~~~---~~v~vi~~~~~~~~---~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~  343 (438)
                      +|. +...           ..+.|+..+++   +.++|+++++.++.   ..+   .+++.+|. .+++|.+++.+++..
T Consensus        85 ~~~kl~~~-----------~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~---~~~i~sr~-~~~~~~~l~~~~l~~  149 (343)
T 1jr3_D           85 PENGPNAA-----------INEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAW---FTALANRS-VQVTCQTPEQAQLPR  149 (343)
T ss_dssp             CSSCCCTT-----------HHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHH---HHHHTTTC-EEEEECCCCTTHHHH
T ss_pred             CCCCCChH-----------HHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHH---HHHHHhCc-eEEEeeCCCHHHHHH
Confidence            998 7643           33778888876   44555555543321   122   46678887 789999999999999


Q ss_pred             HHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          344 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       344 il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      .++..+.+..           ..++++++..++...       .||.+.+.+.+++....
T Consensus       150 ~l~~~~~~~g-----------~~i~~~a~~~l~~~~-------~gdl~~~~~elekl~l~  191 (343)
T 1jr3_D          150 WVAARAKQLN-----------LELDDAANQVLCYCY-------EGNLLALAQALERLSLL  191 (343)
T ss_dssp             HHHHHHHHTT-----------CEECHHHHHHHHHSS-------TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcC-----------CCCCHHHHHHHHHHh-------chHHHHHHHHHHHHHHh
Confidence            9999887642           345678888877654       67778888888877554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.89  E-value=5.8e-10  Score=91.88  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP  276 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~  276 (438)
                      ....++|+||+|+|||+++++++..+...+    ...+.++..++...          . + ..+..+|+|||++.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g----~~~~~~~~~~~~~~----------~-~-~~~~~lLilDE~~~~~~   97 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG----KNAAYIDAASMPLT----------D-A-AFEAEYLAVDQVEKLGN   97 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTT----CCEEEEETTTSCCC----------G-G-GGGCSEEEEESTTCCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEcHHHhhHH----------H-H-HhCCCEEEEeCccccCh
Confidence            345799999999999999999999886422    24566666655433          0 1 12568999999988654

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.88  E-value=5.3e-08  Score=92.28  Aligned_cols=156  Identities=15%  Similarity=0.192  Sum_probs=92.0

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ..++|.+...+.+.+ +.                  . +.++++||+|+|||++++.+++.+..       ..+.+++..
T Consensus        13 ~~~~gR~~el~~L~~-l~------------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~-------~~~~~~~~~   65 (357)
T 2fna_A           13 KDFFDREKEIEKLKG-LR------------------A-PITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLRK   65 (357)
T ss_dssp             GGSCCCHHHHHHHHH-TC------------------S-SEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGGG
T ss_pred             HHhcChHHHHHHHHH-hc------------------C-CcEEEECCCCCCHHHHHHHHHHhcCC-------CEEEEEchh
Confidence            456788765555554 21                  1 48999999999999999999987642       233343322


Q ss_pred             c-----------c---------------------ccc-----------c------ccchHHHHHHHHHc--cCcEEEEeC
Q 013706          242 L-----------V---------------------GEF-----------V------GHTGPKTRRRIKEA--EGGILFVDE  270 (438)
Q Consensus       242 ~-----------~---------------------~~~-----------~------g~~~~~~~~~~~~a--~~~il~iDE  270 (438)
                      .           .                     ...           +      ...-..+-..+.+.  .+.+|||||
T Consensus        66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe  145 (357)
T 2fna_A           66 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDE  145 (357)
T ss_dssp             GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEET
T ss_pred             hccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEEC
Confidence            1           0                     000           0      01111222333332  367999999


Q ss_pred             cccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH-HHH---hhhCcCccCCCCcceeCCCCCHHHHHHHHH
Q 013706          271 AYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILH  346 (438)
Q Consensus       271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~-~~~---~~~~p~l~~R~~~~i~~~~~~~~e~~~il~  346 (438)
                      ++.+.....   .+. ...+..+....  ..+.+|++++.... ..+   .....++..|+...+.+++++.+|..+++.
T Consensus       146 ~~~~~~~~~---~~~-~~~l~~~~~~~--~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~  219 (357)
T 2fna_A          146 AQELVKLRG---VNL-LPALAYAYDNL--KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLR  219 (357)
T ss_dssp             GGGGGGCTT---CCC-HHHHHHHHHHC--TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHH
T ss_pred             HHHhhccCc---hhH-HHHHHHHHHcC--CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHH
Confidence            999875211   111 12223333221  46777777766543 333   122345666777899999999999999998


Q ss_pred             HHHh
Q 013706          347 IKMN  350 (438)
Q Consensus       347 ~~l~  350 (438)
                      ..+.
T Consensus       220 ~~~~  223 (357)
T 2fna_A          220 RGFQ  223 (357)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.79  E-value=7.4e-09  Score=96.12  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH-HcCCcCCCCEEEeecccccccccccc-hHHHHHHHHH-ccCcEEEEeCccccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHT-GPKTRRRIKE-AEGGILFVDEAYRLI  275 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-a~~~il~iDEid~l~  275 (438)
                      ..+++|+||||||||.+|+++++.+. ..+.    +++.++.++++..+.+.. .......+.. ....+|||||++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~----~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~  227 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV----STTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQ  227 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC----CEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCC----cEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence            57899999999999999999999887 6443    566667666655433211 1111111222 234799999997654

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.76  E-value=8.8e-09  Score=88.86  Aligned_cols=128  Identities=19%  Similarity=0.159  Sum_probs=70.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCC-cCC-CCEEEeeccccccccc-------------cc--chHHHHHHH--H
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPT-DRVTEVQRTDLVGEFV-------------GH--TGPKTRRRI--K  259 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~-~~~-~~~~~~~~~~~~~~~~-------------g~--~~~~~~~~~--~  259 (438)
                      +...+++|+||||||++|..++........ ... .+++..+..++...++             ++  ........+  .
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~   84 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP   84 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence            456889999999999999887554320000 011 2333333333322221             11  112333332  2


Q ss_pred             HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCC
Q 013706          260 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF  336 (438)
Q Consensus       260 ~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~  336 (438)
                      ..+++||+|||++.+.+.+......      ..++..++.   ..+-+|++|.+..  .   .+.+++.|++..++++++
T Consensus        85 ~~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~~r~~~~~iil~tq~~~--~---l~~~lr~ri~~~~~l~~~  153 (199)
T 2r2a_A           85 ENIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNTHRHQGIDIFVLTQGPK--L---LDQNLRTLVRKHYHIASN  153 (199)
T ss_dssp             GGTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGGTTTTTCEEEEEESCGG--G---BCHHHHTTEEEEEEEEEC
T ss_pred             ccCceEEEEEChhhhccCccccchh------HHHHHHHHhcCcCCeEEEEECCCHH--H---HhHHHHHHhheEEEEcCc
Confidence            3348999999999997655321111      134444442   3345555555532  2   277789999999988775


Q ss_pred             C
Q 013706          337 N  337 (438)
Q Consensus       337 ~  337 (438)
                      .
T Consensus       154 ~  154 (199)
T 2r2a_A          154 K  154 (199)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.72  E-value=1.4e-08  Score=86.45  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=23.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..++|||||||||||++|.++++.+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34699999999999999999999874

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.65  E-value=2.7e-08  Score=91.06  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=58.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHH---HHHHHccCcEEEEeCccccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFVDEAYRLI  275 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~a~~~il~iDEid~l~  275 (438)
                      ...++|+||||||||++|..++...+.     ...++.....+.++.+..+.+..+.   +.+.+..  +|||||++.+.
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~  195 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVI  195 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccc
Confidence            345799999999999999999986221     1234444222222222233333332   3333333  99999999997


Q ss_pred             CCCCCCC-----chhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          276 PMQKADD-----KDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       276 ~~~~~~~-----~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                      +.....+     .....+.+..|...+....+.+|+++++
T Consensus       196 ~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp  235 (331)
T 2vhj_A          196 GAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP  235 (331)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred             cccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence            6443211     2234456666666666556677777554

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.64  E-value=1.7e-08  Score=90.25  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=22.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..+++||||||||||++|++||+.+
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhh
Confidence            4579999999999999999999864

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.45  E-value=7e-07  Score=103.55  Aligned_cols=139  Identities=14%  Similarity=0.119  Sum_probs=82.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH---------------c-
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE---------------A-  261 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------a-  261 (438)
                      ...++||+||||||||+++..+...+      ...+++.++.+.-..      ...+.+.++.               + 
T Consensus      1303 ~~~pvLL~GptGtGKT~li~~~L~~l------~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~ 1370 (3245)
T 3vkg_A         1303 EHRPLILCGPPGSGKTMTLTSTLRAF------PDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPT 1370 (3245)
T ss_dssp             TTCCCEEESSTTSSHHHHHHHHGGGC------TTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEES
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhC------CCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCC
Confidence            35789999999999997765443221      112455666554321      1222222321               1 


Q ss_pred             ---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhh---ccC--------CCEEEEEecCChhHHHHhhhCcCccCCC
Q 013706          262 ---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRV  327 (438)
Q Consensus       262 ---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~v~vi~~~~~~~~~~~~~~~p~l~~R~  327 (438)
                         +..|+||||++.-.+...+  .....+++.+++..   ++.        .++.+|+|.++...-.....+|++.|||
T Consensus      1371 ~~Gk~~VlFiDDiNmp~~D~yG--tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A         1371 QLGKWLVVFCDEINLPSTDKYG--TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp             STTCEEEEEETTTTCCCCCTTS--CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred             cCCceEEEEecccCCCCccccc--cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence               1159999999865443322  22233445555442   111        2467777765542111111278999999


Q ss_pred             CcceeCCCCCHHHHHHHHHHHHhc
Q 013706          328 TKFFHFNDFNSEELAKILHIKMNN  351 (438)
Q Consensus       328 ~~~i~~~~~~~~e~~~il~~~l~~  351 (438)
                       .++.++.|+.+++..|+..++..
T Consensus      1449 -~vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A         1449 -PILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp             -CEEECCCCCHHHHHHHHHHHHHH
T ss_pred             -eEEEeCCCCHHHHHHHHHHHHHH
Confidence             67999999999999998877654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.42  E-value=1.2e-06  Score=74.22  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .+.|.||+|+||||+++.++..+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999874

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.33  E-value=4e-07  Score=104.90  Aligned_cols=129  Identities=18%  Similarity=0.120  Sum_probs=82.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc--cCcEEEEeCcccccCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPM  277 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~  277 (438)
                      .+.++.||||||||++++.+|+.++.       +++.+++++-...      ..+..+|..+  .|+.+++||++++.+.
T Consensus       646 ~~~~l~GpaGtGKTe~vk~LA~~lg~-------~~v~~nc~e~ld~------~~lg~~~~g~~~~Gaw~~~DE~nr~~~e  712 (2695)
T 4akg_A          646 YGGCFFGPAGTGKTETVKAFGQNLGR-------VVVVFNCDDSFDY------QVLSRLLVGITQIGAWGCFDEFNRLDEK  712 (2695)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHTTTC-------CCEEEETTSSCCH------HHHHHHHHHHHHHTCEEEEETTTSSCHH
T ss_pred             CCCcccCCCCCCcHHHHHHHHHHhCC-------cEEEEECCCCCCh------hHhhHHHHHHHhcCCEeeehhhhhcChH
Confidence            57889999999999999999998877       8888898764432      3345556544  4799999999988752


Q ss_pred             CCCCCchhHHHHHHHHHhhccC--------C-------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHH
Q 013706          278 QKADDKDYGIEALEEIMSVMDG--------G-------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA  342 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~~--------~-------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~  342 (438)
                      ..    +.....+..+...+.+        |       ...|+++.++. ....-..+++|++|| ..+.+..|+.+.+.
T Consensus       713 vL----s~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg-y~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~  786 (2695)
T 4akg_A          713 VL----SAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG-YNGRSELPENLKKSF-REFSMKSPQSGTIA  786 (2695)
T ss_dssp             HH----HHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC-SSSSCCCCHHHHTTE-EEEECCCCCHHHHH
T ss_pred             HH----HHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC-ccCcccccHHHHhhe-EEEEeeCCCHHHHH
Confidence            11    0000111112222211        1       22344554432 211112256788899 78999999999888


Q ss_pred             HHHHH
Q 013706          343 KILHI  347 (438)
Q Consensus       343 ~il~~  347 (438)
                      +|+-.
T Consensus       787 ei~l~  791 (2695)
T 4akg_A          787 EMILQ  791 (2695)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88643

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=98.31  E-value=1.4e-06  Score=97.44  Aligned_cols=109  Identities=13%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc----ccccc------------cch---HHHHH
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVG------------HTG---PKTRR  256 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~g------------~~~---~~~~~  256 (438)
                      ..++.+++|+||||||||++|.+++.+....|.    ....++..+.+    .+..|            ..+   ..++.
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~----~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----CEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH
Confidence            346778999999999999999999988765432    34444443221    22223            122   23333


Q ss_pred             HHHHccCcEEEEeCcccccCCCC-----CCCch-hHHHHHHHHHhhc----cCCCEEEEEec
Q 013706          257 RIKEAEGGILFVDEAYRLIPMQK-----ADDKD-YGIEALEEIMSVM----DGGKVVVIFAG  308 (438)
Q Consensus       257 ~~~~a~~~il~iDEid~l~~~~~-----~~~~~-~~~~~~~~ll~~~----~~~~v~vi~~~  308 (438)
                      ..+.....+|||||++.+.+.+.     ++++. ...++++++|..|    ....+++|+++
T Consensus      1500 lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A         1500 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp             HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             HHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence            44556789999999999987421     11111 1344555555554    45677777775

>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}

Probab=98.28  E-value=5.6e-07  Score=65.91  Aligned_cols=78  Identities=22%  Similarity=0.223  Sum_probs=61.0

Q ss_pred             eCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCC
Q 013706          332 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFD  411 (438)
Q Consensus       332 ~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~  411 (438)
                      .-.+|+.++|.+||+.++++.         .+..+++.+.++..+.++         +|++|.+++..|...+..+.   
T Consensus         7 ~~~~Pd~~~R~~IL~~~l~~~---------~l~~dvdl~~LA~~T~G~---------SGADL~~l~~eAa~~alr~~---   65 (86)
T 2krk_A            7 HHSHPNEEARLDILKIHSRKM---------NLTRGINLRKIAELMPGA---------SGAEVKGVCTEAGMYALRER---   65 (86)
T ss_dssp             CCCCCCHHHHHHHHHHHTTTS---------EECTTCCCHHHHHTCSSC---------CHHHHHHHHHHHHHHHHHTT---
T ss_pred             CCCCcCHHHHHHHHHHHHcCC---------CCCcccCHHHHHHHcCCC---------CHHHHHHHHHHHHHHHHHHc---
Confidence            457899999999999999875         344566766666666544         47888999999888775542   


Q ss_pred             CCChhhhhhccHHHHHHHHHHHHhc
Q 013706          412 CLDTDELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       412 ~~~~~~~~~i~~~d~~~a~~~~~~~  436 (438)
                            ...|+.+||.+|++.++|.
T Consensus        66 ------~~~I~~~df~~Al~~v~p~   84 (86)
T 2krk_A           66 ------RVHVTQEDFEMAVAKVMQK   84 (86)
T ss_dssp             ------CSEECHHHHHHHHHHHHCC
T ss_pred             ------CCCCCHHHHHHHHHHHccC
Confidence                  3679999999999999884

>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}

Probab=98.19  E-value=1.9e-06  Score=62.06  Aligned_cols=76  Identities=21%  Similarity=0.201  Sum_probs=58.7

Q ss_pred             CCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCC
Q 013706          334 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCL  413 (438)
Q Consensus       334 ~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~  413 (438)
                      |.|+.++|.+||+.++++.         .+..+++.+.++..+.++         +|++|.+++..|...+..+      
T Consensus         1 plPd~~~R~~Il~~~l~~~---------~~~~~~dl~~la~~t~G~---------SGADi~~l~~eA~~~a~~~------   56 (78)
T 3kw6_A            1 PPPNEEARLDILKIHSRKM---------NLTRGINLRKIAELMPGA---------SGAEVKGVCTEAGMYALRE------   56 (78)
T ss_dssp             CCCCHHHHHHHHHHHHTTS---------EECTTCCHHHHHHTCTTC---------CHHHHHHHHHHHHHHHHHT------
T ss_pred             CcCCHHHHHHHHHHHhcCC---------CCCCccCHHHHHHHcCCC---------CHHHHHHHHHHHHHHHHHh------
Confidence            6899999999999999875         344566766666666544         4788899999998887544      


Q ss_pred             ChhhhhhccHHHHHHHHHHHHhc
Q 013706          414 DTDELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       414 ~~~~~~~i~~~d~~~a~~~~~~~  436 (438)
                         +...|+.+||.+|++.+...
T Consensus        57 ---~~~~i~~~d~~~Al~~v~~~   76 (78)
T 3kw6_A           57 ---RRVHVTQEDFEMAVAKVMQK   76 (78)
T ss_dssp             ---TCSEECHHHHHHHHHHHHC-
T ss_pred             ---CCCCCCHHHHHHHHHHHHhc
Confidence               23579999999999998753

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.11  E-value=1.5e-06  Score=74.09  Aligned_cols=26  Identities=15%  Similarity=0.062  Sum_probs=20.4

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .-++++||||+|||+++..++..+..
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~   29 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKL   29 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            35789999999999999666665543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.88  E-value=2.1e-05  Score=91.59  Aligned_cols=121  Identities=17%  Similarity=0.096  Sum_probs=80.6

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc--cCcEEEEeCcccccCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPM  277 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~  277 (438)
                      .+..+.||+|||||.+++.+|+.++.       +++.++|++-...      ..+.++|.-+  .|+...+||++++.. 
T Consensus       605 ~gg~~~GPaGtGKTet~k~La~~lgr-------~~~vfnC~~~~d~------~~~g~i~~G~~~~GaW~cfDEfNrl~~-  670 (3245)
T 3vkg_A          605 MGGNPFGPAGTGKTETVKALGSQLGR-------FVLVFCCDEGFDL------QAMSRIFVGLCQCGAWGCFDEFNRLEE-  670 (3245)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEECSSCCCH------HHHHHHHHHHHHHTCEEEEETTTSSCH-
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHhCC-------eEEEEeCCCCCCH------HHHHHHHhhHhhcCcEEEehhhhcCCH-
Confidence            45678999999999999999999886       8888888764332      2333444433  578999999998864 


Q ss_pred             CCCCCchhHHHHHHHHHhhcc-----------------CC------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCC
Q 013706          278 QKADDKDYGIEALEEIMSVMD-----------------GG------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN  334 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~-----------------~~------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~  334 (438)
                                ++++.+.+++.                 +.      ...++++.++ .+...-..++.|+.|| +.|.++
T Consensus       671 ----------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~lF-r~v~m~  738 (3245)
T 3vkg_A          671 ----------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKLF-RSMAMI  738 (3245)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTTE-EEEECC
T ss_pred             ----------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhhc-EEEEEe
Confidence                      33333333221                 21      2345555443 2221112367788899 779999


Q ss_pred             CCCHHHHHHHHH
Q 013706          335 DFNSEELAKILH  346 (438)
Q Consensus       335 ~~~~~e~~~il~  346 (438)
                      .|+.+.+.+|+-
T Consensus       739 ~Pd~~~i~ei~L  750 (3245)
T 3vkg_A          739 KPDREMIAQVML  750 (3245)
T ss_dssp             SCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            999988888864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.86  E-value=9.1e-05  Score=65.25  Aligned_cols=27  Identities=30%  Similarity=0.344  Sum_probs=22.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +...++|+||||+|||++++.++..+.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            445688999999999999999997653

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.85  E-value=7.2e-05  Score=73.33  Aligned_cols=88  Identities=18%  Similarity=0.232  Sum_probs=53.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc----cccccccchHHHHHHHHH---------------
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL----VGEFVGHTGPKTRRRIKE---------------  260 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~---------------  260 (438)
                      .++++.||||||||+++..++..+...+.   ..++.+.++..    +.+..|.....+.+.+..               
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~---~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~  122 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEALISTGE---TGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKE  122 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTC---CCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECS
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCC---ceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccc
Confidence            38999999999999999999998876443   13333333321    111122222222233321               


Q ss_pred             ----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC
Q 013706          261 ----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK  301 (438)
Q Consensus       261 ----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~  301 (438)
                          ....+|+|||+..+..           ..+..|+..+..+.
T Consensus       123 ~~~~~~~~~iiiDE~~~~~~-----------~~~~~l~~~~~~~~  156 (459)
T 3upu_A          123 VPDLAKCRVLICDEVSMYDR-----------KLFKILLSTIPPWC  156 (459)
T ss_dssp             CCCCSSCSEEEESCGGGCCH-----------HHHHHHHHHSCTTC
T ss_pred             cccccCCCEEEEECchhCCH-----------HHHHHHHHhccCCC
Confidence                1247999999987754           34577777776444

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.85  E-value=9.2e-06  Score=81.65  Aligned_cols=91  Identities=23%  Similarity=0.346  Sum_probs=55.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc----ccccccchHHHHHHHHHc------------c
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGHTGPKTRRRIKEA------------E  262 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~a------------~  262 (438)
                      ...+++.||||||||++++.++..+...+.    .++.+.++.-.    .+..|.....+.+.+...            .
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~----~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~  279 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGL----EVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAP  279 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTC----CEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC----eEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhccccc
Confidence            467899999999999999999998876442    44444333211    111222222233333111            2


Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEE
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV  304 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~v  304 (438)
                      ..+|+|||+..+..           ..+..|+..+..+..++
T Consensus       280 ~dvlIIDEasml~~-----------~~~~~Ll~~~~~~~~li  310 (574)
T 3e1s_A          280 YDLLIVDEVSMMGD-----------ALMLSLLAAVPPGARVL  310 (574)
T ss_dssp             CSEEEECCGGGCCH-----------HHHHHHHTTSCTTCEEE
T ss_pred             CCEEEEcCccCCCH-----------HHHHHHHHhCcCCCEEE
Confidence            37999999987754           45577777776544333

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.73  E-value=0.00093  Score=59.73  Aligned_cols=135  Identities=10%  Similarity=0.044  Sum_probs=64.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-ccccchHHHHHHHHHccCcEEEEeCcccccCCCC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK  279 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~  279 (438)
                      .+++.||||+|||++|+.||+.++.       .++..+....... .++...... .  +.+.-.-.|+|+.+-...  .
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~-------~~i~~D~~~~~~~~~~~t~~~~~-~--e~~~~~~~~~~~~~~~~~--~   70 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGW-------PVVALDRVQCCPQIATGSGRPLE-S--ELQSTRRIYLDSRPLTEG--I   70 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCC-------CEEECCSGGGCGGGTTTTTCCCG-G--GGTTCCEECSCCCCGGGC--S
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCC-------eEEeccHHhccCCCccccCCCCH-H--HHhCCCeEEEeeeccccc--c
Confidence            4789999999999999999998754       5554443211111 111110000 0  111123466665432110  0


Q ss_pred             CCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCC-cceeCCCCCHHHHHHHHHHHH
Q 013706          280 ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKM  349 (438)
Q Consensus       280 ~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~-~~i~~~~~~~~e~~~il~~~l  349 (438)
                      -+...+...+.+.+ ..+..+..+|+..++...+..++. ...+..+++ ..+.+..|..+.+.+-+....
T Consensus        71 ~~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~  139 (253)
T 2ze6_A           71 LDAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAK-SPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV  139 (253)
T ss_dssp             CCHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHH-CTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHh-cccccccCceEEEEecchhHHHHHHHHHHHH
Confidence            01122333444455 555666655555444333333322 111112332 456677776566655554443

>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*

Probab=97.72  E-value=2.1e-05  Score=57.22  Aligned_cols=74  Identities=9%  Similarity=0.134  Sum_probs=56.0

Q ss_pred             CCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCCh
Q 013706          336 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDT  415 (438)
Q Consensus       336 ~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~  415 (438)
                      ++.++|.+||+.++++.         .+..+++.+.++..+.         +.+|++|.+++..|...+..+.       
T Consensus         1 ~d~~~R~~Il~~~l~~~---------~~~~~vdl~~la~~t~---------G~SGADi~~l~~eA~~~a~~~~-------   55 (83)
T 3aji_B            1 MDRRQKRLIFSTITSKM---------NLSEEVDLEDYVARPD---------KISGADINSICQESGMLAVREN-------   55 (83)
T ss_dssp             CCHHHHHHHHHHHHTTS---------CBCTTCCTHHHHTSSC---------CCCHHHHHHHHHHHHHGGGTSC-------
T ss_pred             CCHHHHHHHHHHHhCCC---------CCCcccCHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHhc-------
Confidence            46789999999999865         3345566666665555         4558888999999988875442       


Q ss_pred             hhhhhccHHHHHHHHHHHHhc
Q 013706          416 DELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       416 ~~~~~i~~~d~~~a~~~~~~~  436 (438)
                        ...|+.+||..|++.++|.
T Consensus        56 --~~~i~~~df~~Al~~~~ps   74 (83)
T 3aji_B           56 --RYIVLAKDFEKAYKTVIKK   74 (83)
T ss_dssp             --CSSBCHHHHHHHHHHHCC-
T ss_pred             --cCCcCHHHHHHHHHHHccC
Confidence              3579999999999999884

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.71  E-value=3.7e-05  Score=70.80  Aligned_cols=98  Identities=16%  Similarity=0.232  Sum_probs=52.0

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-ccccchHHHHHHHHHccCcEEEEeCcccccCCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ  278 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~  278 (438)
                      +.+++.||||+|||++|+.+|+.++.       .++..+...+... .+|. .+....-..  .-.-.|+|..+-...  
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~-------~iis~Ds~qvy~~~~igT-akp~~~e~~--gvph~lid~~~~~~~--   73 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPC-------ELISVDSALIYRGMDIGT-AKPSRELLA--RYPHRLIDIRDPAES--   73 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCE-------EEEEECTTTTBTTCCTTT-TCCCHHHHH--HSCEETSSCBCTTSC--
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCC-------cEEeccchhhhcCCCccc-CCCCHHHHc--CCCEEEeeccCcccc--
Confidence            46889999999999999999997753       5555544322221 1221 111111111  113366776543321  


Q ss_pred             CCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          279 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       279 ~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                       -+...+...+...+-.....++++|++.++.
T Consensus        74 -~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~  104 (323)
T 3crm_A           74 -YSAAEFRADALAAMAKATARGRIPLLVGGTM  104 (323)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             -cCHHHHHHHHHHHHHHHHHcCCeEEEECCch
Confidence             1113343444444444455666666666544

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.71  E-value=0.00016  Score=68.30  Aligned_cols=107  Identities=16%  Similarity=0.224  Sum_probs=58.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----cccc-----------chHHHHHHHH---
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH-----------TGPKTRRRIK---  259 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----~~g~-----------~~~~~~~~~~---  259 (438)
                      +..-++++||||+|||++|..++..+...+    .+++.++.......    .+|.           +...+...++   
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g----~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~  148 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV  148 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCC----CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence            445688999999999999999988765432    24454544332111    1111           1122222222   


Q ss_pred             -HccCcEEEEeCcccccCCCCCC---Cc-------hhHHHHHHHHHhhccCCCEEEEEec
Q 013706          260 -EAEGGILFVDEAYRLIPMQKAD---DK-------DYGIEALEEIMSVMDGGKVVVIFAG  308 (438)
Q Consensus       260 -~a~~~il~iDEid~l~~~~~~~---~~-------~~~~~~~~~ll~~~~~~~v~vi~~~  308 (438)
                       .....+|+||.+..+.+...-.   .+       ......+..|.......++.||+++
T Consensus       149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n  208 (366)
T 1xp8_A          149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN  208 (366)
T ss_dssp             TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence             2345899999999998532110   00       1112334444444455566666664

>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*

Probab=97.71  E-value=2e-05  Score=57.92  Aligned_cols=73  Identities=14%  Similarity=0.118  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChh
Q 013706          337 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD  416 (438)
Q Consensus       337 ~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~  416 (438)
                      +.++|.+||+.++++.         .+..+++.+.++..+.++         .|++|.+++..|...+..+         
T Consensus         2 d~~~R~~Il~~~~~~~---------~~~~dvdl~~lA~~t~G~---------SGADl~~l~~eAa~~a~r~---------   54 (88)
T 3vlf_B            2 DLEGRANIFRIHSKSM---------SVERGIRWELISRLCPNS---------TGAELRSVCTEAGMFAIRA---------   54 (88)
T ss_dssp             CSSHHHHHHHHHHTTS---------CBCSCCCHHHHHHTCSSC---------CHHHHHHHHHHHHHHHHHH---------
T ss_pred             CHHHHHHHHHHHHCCC---------CCCCccCHHHHHHHcCCC---------cHHHHHHHHHHHHHHHHHh---------
Confidence            5678999999999875         344667777766665544         4788899999888877554         


Q ss_pred             hhhhccHHHHHHHHHHHHhc
Q 013706          417 ELRTITLEDLEAGLKLLLRL  436 (438)
Q Consensus       417 ~~~~i~~~d~~~a~~~~~~~  436 (438)
                      ....|+.+||.+|++.+.+.
T Consensus        55 ~~~~i~~~df~~Al~~v~~~   74 (88)
T 3vlf_B           55 RRKVATEKDFLKAVDKVISG   74 (88)
T ss_dssp             SCSSBCHHHHHHHHHHHTC-
T ss_pred             ccccCCHHHHHHHHHHHhcC
Confidence            22469999999999998763

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.71  E-value=0.0003  Score=61.04  Aligned_cols=74  Identities=19%  Similarity=0.180  Sum_probs=45.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc------ccccc----------cccc--chHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT------DLVGE----------FVGH--TGPKTRRRIKE  260 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~----------~~g~--~~~~~~~~~~~  260 (438)
                      ..++++.|+||||||+++-.+|..+...|..  ..++.+++.      .+...          +-|.  .+..+..++. 
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~--V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~-   82 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVR--VMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK-   82 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCC--EEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH-
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCC--EEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh-
Confidence            3579999999999999999999988776641  122333320      11111          1111  1233444444 


Q ss_pred             ccCcEEEEeCccccc
Q 013706          261 AEGGILFVDEAYRLI  275 (438)
Q Consensus       261 a~~~il~iDEid~l~  275 (438)
                      .++.+++|||+....
T Consensus        83 ~~pdlvIVDElG~~~   97 (228)
T 2r8r_A           83 AAPSLVLVDELAHTN   97 (228)
T ss_dssp             HCCSEEEESCTTCBC
T ss_pred             cCCCEEEEeCCCCCC
Confidence            367899999998753

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.70  E-value=0.00021  Score=62.34  Aligned_cols=28  Identities=18%  Similarity=-0.191  Sum_probs=22.8

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .-++++||||+|||+++..++..+...+
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g   40 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYAD   40 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence            4467889999999999999888775544

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.67  E-value=0.00036  Score=67.06  Aligned_cols=30  Identities=30%  Similarity=0.380  Sum_probs=25.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      ++.-+++.||+|+||||++..+|..+...+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G  125 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG  125 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            355678999999999999999999886544

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.63  E-value=0.00016  Score=62.79  Aligned_cols=38  Identities=24%  Similarity=0.386  Sum_probs=29.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG  244 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~  244 (438)
                      .++-|+|.||||+||+|.|+.|++.++         +..++..+++.
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g---------~~hIstGdllR   65 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFH---------FNHLSSGDLLR   65 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHC---------CEEECHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHC---------CceEcHHHHHH
Confidence            455678899999999999999999874         34555555543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.63  E-value=0.00021  Score=63.45  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=22.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +..-++++||||+|||+++..++..+.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~   48 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGL   48 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445688999999999999988876553

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.63  E-value=0.00066  Score=68.79  Aligned_cols=48  Identities=19%  Similarity=0.182  Sum_probs=35.9

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHH
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      ...++|.+...++|.+.+...              .....-++++||+|+|||++|+.+++.
T Consensus       123 ~~~~vGR~~~l~~L~~~L~~~--------------~~~~~~v~I~G~~GiGKTtLa~~~~~~  170 (591)
T 1z6t_A          123 PVVFVTRKKLVNAIQQKLSKL--------------KGEPGWVTIHGMAGCGKSVLAAEAVRD  170 (591)
T ss_dssp             CSSCCCCHHHHHHHHHHHTTS--------------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CCeecccHHHHHHHHHHHhcc--------------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence            356899998888888764311              123456889999999999999999753

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.60  E-value=9.2e-05  Score=69.57  Aligned_cols=75  Identities=20%  Similarity=0.241  Sum_probs=44.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc----ccccc-----------chHHHHHHH----
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKTRRRI----  258 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~~~~~----  258 (438)
                      +..-++++||||+|||++|..++..+...+    ..++.++......    ..+|.           +...+..++    
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g----~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~  135 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAG----GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV  135 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence            445588999999999999999987765432    2444444332111    11121           111111222    


Q ss_pred             HHccCcEEEEeCcccccC
Q 013706          259 KEAEGGILFVDEAYRLIP  276 (438)
Q Consensus       259 ~~a~~~il~iDEid~l~~  276 (438)
                      ......+|+||++..+.+
T Consensus       136 ~~~~~~lIVIDsl~~l~~  153 (349)
T 2zr9_A          136 RSGALDIIVIDSVAALVP  153 (349)
T ss_dssp             TTTCCSEEEEECGGGCCC
T ss_pred             hcCCCCEEEEcChHhhcc
Confidence            223468999999999985

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.60  E-value=0.0026  Score=61.19  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=25.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      +|.-+++.||||+||||++..+|..+...+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G  128 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG  128 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence            356688999999999999999999886544

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.58  E-value=7.8e-05  Score=70.59  Aligned_cols=64  Identities=16%  Similarity=0.035  Sum_probs=40.7

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc-cccccccchHHHHHHHHHccCcEEEEeCcccc
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL-VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRL  274 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l  274 (438)
                      ..++..++|+||||+||||++++++..+..       .++.+..+.- ...++|.       +   .+..++|+||++.+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g-------~~~~~~~~~~~~~~~lg~-------~---~q~~~~l~dd~~~~  228 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELCGG-------KALNVNLPLDRLNFELGV-------A---IDQFLVVFEDVKGT  228 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCC-------EEECCSSCTTTHHHHHGG-------G---TTCSCEEETTCCCS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcCC-------cEEEEeccchhHHHHHHH-------h---cchhHHHHHHHHHH
Confidence            445668999999999999999999986532       3332222110 0111111       1   23467899999998


Q ss_pred             cC
Q 013706          275 IP  276 (438)
Q Consensus       275 ~~  276 (438)
                      ..
T Consensus       229 ~~  230 (377)
T 1svm_A          229 GG  230 (377)
T ss_dssp             TT
T ss_pred             HH
Confidence            76

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.58  E-value=0.00013  Score=68.64  Aligned_cols=75  Identities=16%  Similarity=0.191  Sum_probs=46.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc----ccccc-----------chHHHHH----HH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKTRR----RI  258 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~~~----~~  258 (438)
                      +...++++||||+|||++|..++..+...+    .+++.++......    ..+|.           +...+..    +.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g----~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~  137 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA  137 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence            445689999999999999999998775433    2455555432111    11111           1122222    23


Q ss_pred             HHccCcEEEEeCcccccC
Q 013706          259 KEAEGGILFVDEAYRLIP  276 (438)
Q Consensus       259 ~~a~~~il~iDEid~l~~  276 (438)
                      +.....+|+||.+..+.+
T Consensus       138 ~~~~~~lVVIDsl~~l~~  155 (356)
T 1u94_A          138 RSGAVDVIVVDSVAALTP  155 (356)
T ss_dssp             HHTCCSEEEEECGGGCCC
T ss_pred             hccCCCEEEEcCHHHhcc
Confidence            334568999999999985

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.57  E-value=0.00037  Score=65.29  Aligned_cols=75  Identities=17%  Similarity=0.238  Sum_probs=45.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----ccc-----------cchH----HHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVG-----------HTGP----KTRRRI  258 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----~~g-----------~~~~----~~~~~~  258 (438)
                      +..-++++||||+|||+++..++..+...+    ..++.++.......    -+|           .+..    .+..++
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g----g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~  135 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG----GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV  135 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence            344578999999999999999998775432    24445554432110    011           1111    122222


Q ss_pred             HHccCcEEEEeCcccccC
Q 013706          259 KEAEGGILFVDEAYRLIP  276 (438)
Q Consensus       259 ~~a~~~il~iDEid~l~~  276 (438)
                      ......+++||.+..+.+
T Consensus       136 ~~~~~dlvVIDSi~~l~~  153 (356)
T 3hr8_A          136 RSGVVDLIVVDSVAALVP  153 (356)
T ss_dssp             HTSCCSEEEEECTTTCCC
T ss_pred             hhcCCCeEEehHhhhhcC
Confidence            334568999999998886

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.54  E-value=3.5e-05  Score=65.00  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=23.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..++|.||||+||||+|+.+++.+..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~   29 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            346899999999999999999997754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.53  E-value=0.00051  Score=58.40  Aligned_cols=27  Identities=33%  Similarity=0.551  Sum_probs=23.4

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .+.|.||+|+||||+.+.++..+...|
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~~~G   29 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHHhhcccCC
Confidence            478999999999999999999886444

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.51  E-value=0.00012  Score=63.79  Aligned_cols=24  Identities=25%  Similarity=0.177  Sum_probs=21.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +..-++++||||+|||++++.++.
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445688999999999999999997

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.51  E-value=0.00018  Score=63.79  Aligned_cols=24  Identities=29%  Similarity=0.180  Sum_probs=20.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .++++.||+|+|||.+|..++..+
T Consensus       109 ~~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A          109 KRGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHc
Confidence            359999999999999998887654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.49  E-value=5e-05  Score=64.46  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=24.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++.++|.||||+|||++|+.+++.++.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~   31 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKR   31 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            567999999999999999999998854

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.44  E-value=7e-05  Score=64.47  Aligned_cols=29  Identities=24%  Similarity=0.371  Sum_probs=25.1

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+...++|.||||+||||+++.+++.++.
T Consensus        23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~   51 (199)
T 3vaa_A           23 NAMVRIFLTGYMGAGKTTLGKAFARKLNV   51 (199)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            35668999999999999999999998854

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.43  E-value=0.00012  Score=68.18  Aligned_cols=28  Identities=25%  Similarity=0.496  Sum_probs=25.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ...+++|.||||+|||++++++|+.+..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            3457999999999999999999999876

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.42  E-value=9.2e-05  Score=63.97  Aligned_cols=34  Identities=29%  Similarity=0.507  Sum_probs=27.2

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  243 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~  243 (438)
                      .++|.||||+||+|.|+.|++.++         +..++..+++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g---------~~~istGdll   35 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG---------FVHISTGDIL   35 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC---------CEEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC---------CeEEcHHHHH
Confidence            478999999999999999999874         3456655554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.42  E-value=0.00029  Score=62.48  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=21.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      +..-++|+||||+|||++++.++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4456889999999999999999874

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.40  E-value=0.00047  Score=69.16  Aligned_cols=44  Identities=16%  Similarity=0.033  Sum_probs=32.9

Q ss_pred             cChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHH
Q 013706          165 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       165 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +|.+..+++|.+++..-             .......+.++|++|+|||++|+.+++
T Consensus       131 ~GR~~~~~~l~~~L~~~-------------~~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEM-------------CDLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHH-------------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcc-------------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            58888888887764311             011345678999999999999999996

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.38  E-value=0.00062  Score=76.58  Aligned_cols=108  Identities=13%  Similarity=0.195  Sum_probs=64.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccc----ccc--------c---hHH----HHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----VGH--------T---GPK----TRRRI  258 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----~g~--------~---~~~----~~~~~  258 (438)
                      +..-++|+|+||+|||++|..+|..+...    ..+++.++......++    +|-        .   ...    ++.+.
T Consensus       731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~----g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~  806 (2050)
T 3cmu_A          731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA  806 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHh
Confidence            55668999999999999999999887642    2356667665544332    231        1   112    22223


Q ss_pred             HHccCcEEEEeCcccccC-C----CCCCCc-hhHHHHHHHHHhhc----cCCCEEEEEecC
Q 013706          259 KEAEGGILFVDEAYRLIP-M----QKADDK-DYGIEALEEIMSVM----DGGKVVVIFAGY  309 (438)
Q Consensus       259 ~~a~~~il~iDEid~l~~-~----~~~~~~-~~~~~~~~~ll~~~----~~~~v~vi~~~~  309 (438)
                      .+...++||||.+..+.+ .    +.++.+ +...+.++++++.|    ...++.||+.+.
T Consensus       807 ~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q  867 (2050)
T 3cmu_A          807 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ  867 (2050)
T ss_dssp             HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             hccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence            335569999999999986 2    111111 22233344444444    446777777663

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=97.35  E-value=0.00085  Score=68.00  Aligned_cols=27  Identities=33%  Similarity=0.329  Sum_probs=22.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ...+++.||||||||+++..+...+..
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~  190 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAALIQ  190 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            457999999999999999888877753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.32  E-value=0.00023  Score=62.51  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-+.|.||+|+|||++++.++..+
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34457899999999999999998744

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.29  E-value=0.001  Score=60.35  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=22.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ...-++|+||||+|||++++.++..+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            345688999999999999999998664

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.29  E-value=0.00026  Score=64.62  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+..++|.||||+||||+|+.+++.+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45668899999999999999999866

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.29  E-value=0.00012  Score=61.56  Aligned_cols=26  Identities=35%  Similarity=0.618  Sum_probs=23.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +.++|.||||+|||++|+.||+.++.
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~   30 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDL   30 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            36899999999999999999998854

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.29  E-value=0.00013  Score=60.81  Aligned_cols=28  Identities=32%  Similarity=0.545  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..+++|.|+||+||||+|+.|++.++.
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~   33 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKL   33 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4568999999999999999999998865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.28  E-value=0.00012  Score=62.16  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=22.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      .+..++|.|+||+|||++++.+++.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999999999997

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.28  E-value=0.00013  Score=61.67  Aligned_cols=28  Identities=29%  Similarity=0.483  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..++|.|+||+|||++++.+++.++.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~   37 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGL   37 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            4567999999999999999999998753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.28  E-value=0.00014  Score=61.56  Aligned_cols=26  Identities=35%  Similarity=0.704  Sum_probs=23.4

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +.++|.|+||+|||++|+.|++.++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~   28 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGV   28 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            45899999999999999999998864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.26  E-value=0.00015  Score=60.48  Aligned_cols=25  Identities=24%  Similarity=0.129  Sum_probs=22.6

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++|.||||+||||+++.|++.++.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~   27 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKY   27 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999998754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.26  E-value=0.00018  Score=61.91  Aligned_cols=29  Identities=31%  Similarity=0.380  Sum_probs=24.9

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..+..|+|.|+||+||||+|+.|++.++.
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~   46 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGI   46 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34557899999999999999999998754

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.25  E-value=0.00095  Score=60.77  Aligned_cols=105  Identities=19%  Similarity=0.291  Sum_probs=54.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-ccccchHHHHHHHHHccCcEEEEeCcccccCC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM  277 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~  277 (438)
                      ++-+++.||+|+|||++|..+|+.+..       .++..+...+... .+|.. +....  +...-.=-|||..+   +.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~-------~iis~Ds~qvY~~~~igTa-kp~~~--E~~~v~hhlid~~~---~~   76 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPV-------ELISVDSALIYKGMDIGTA-KPNAE--ELLAAPHRLLDIRD---PS   76 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCE-------EEEECCTTTTBTTCCTTTT-CCCHH--HHHHSCEETSSCBC---TT
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCC-------cEEecccccccccccccCC-CCCHH--HHcCCCEEEeccCC---cc
Confidence            445789999999999999999997643       4554444332211 12211 11111  11111234555443   11


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHH
Q 013706          278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~  316 (438)
                      ..-+..++...+...+-.....+++.+++.++.=-+..+
T Consensus        77 e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTglYi~al  115 (316)
T 3foz_A           77 QAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKAL  115 (316)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHH
Confidence            111123444555555555556677776666654444444

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=97.23  E-value=0.00069  Score=67.02  Aligned_cols=76  Identities=13%  Similarity=0.101  Sum_probs=50.7

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK  343 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~  343 (438)
                      -+|+|||++.+.....    ......+..+.+.-..-.+.+|++|.+...+.+   +..++.-|+.+|.|...+..+...
T Consensus       345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I---~~~Iran~~~RI~lrv~s~~Dsr~  417 (574)
T 2iut_A          345 IVVVVDEFADMMMIVG----KKVEELIARIAQKARAAGIHLILATQRPSVDVI---TGLIKANIPTRIAFQVSSKIDSRT  417 (574)
T ss_dssp             EEEEESCCTTHHHHTC----HHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTS---CHHHHHTCCEEEEECCSCHHHHHH
T ss_pred             EEEEEeCHHHHhhhhh----HHHHHHHHHHHHHHhhCCeEEEEEecCcccccc---cHHHHhhhccEEEEEcCCHHHHHH
Confidence            4899999998875321    222344455555555566888888765443322   455666788888999999988888


Q ss_pred             HHH
Q 013706          344 ILH  346 (438)
Q Consensus       344 il~  346 (438)
                      |+.
T Consensus       418 ILd  420 (574)
T 2iut_A          418 ILD  420 (574)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            874

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.20  E-value=0.00052  Score=63.87  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=22.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-++++||||+|||++|..++...
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            44568899999999999999998754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.20  E-value=0.00022  Score=60.76  Aligned_cols=28  Identities=32%  Similarity=0.535  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..++|.|+||+||||+++.+++.++.
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~   31 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRL   31 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3456889999999999999999998753

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.19  E-value=0.00079  Score=74.80  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=49.2

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc----cccccc-----------chHHH----HH
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKT----RR  256 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~g~-----------~~~~~----~~  256 (438)
                      ..+...++|+||||+|||++|..+|..+...+    .+++.++.....    .+..|-           +...+    +.
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g----~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~  804 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA  804 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcC----CCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence            34566799999999999999999998876533    245555544322    122221           11122    22


Q ss_pred             HHHHccCcEEEEeCcccccC
Q 013706          257 RIKEAEGGILFVDEAYRLIP  276 (438)
Q Consensus       257 ~~~~a~~~il~iDEid~l~~  276 (438)
                      +..+....+|+||.+..+.+
T Consensus       805 lv~~~~~~lVVIDsLq~l~~  824 (1706)
T 3cmw_A          805 LARSGAVDVIVVDSVAALTP  824 (1706)
T ss_dssp             HHHHTCCSEEEESCSTTCCC
T ss_pred             HHHccCCCEEEEechhhhcc
Confidence            23344569999999999985

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.17  E-value=0.001  Score=60.67  Aligned_cols=105  Identities=17%  Similarity=0.174  Sum_probs=55.4

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-ccccchHHHHHHHHHccCcEEEEeCcccccCCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ  278 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~  278 (438)
                      +-+++.||+|+|||++|..+|+.+..       .++..+...+... .+|...... .  +...-.=-|||..+   +..
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~~~-------~iis~Ds~QvYr~~~igTakp~~-~--E~~gvphhlid~~~---~~e   70 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRLNG-------EVISGDSMQVYRGMDIGTAKITA-E--EMDGVPHHLIDIKD---PSE   70 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTTE-------EEEECCGGGGBTTCCTTTTCCCH-H--HHTTCCEESSSCBC---TTS
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhCcc-------ceeecCcccceeeeeecCCCCCH-H--HHcCCCEEEeccCC---hhh
Confidence            35789999999999999999986642       4444433322211 122211111 1  22222345666543   111


Q ss_pred             CCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHh
Q 013706          279 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVI  317 (438)
Q Consensus       279 ~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~  317 (438)
                      .-+...+...+...+-.....+++.+++.+|.=-+..++
T Consensus        71 ~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl  109 (322)
T 3exa_A           71 SFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVI  109 (322)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHH
Confidence            111234555555555555666887777766554444443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.15  E-value=0.00024  Score=62.12  Aligned_cols=28  Identities=29%  Similarity=0.407  Sum_probs=24.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++..++|.|+||+||||+|+.|++.++.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~   30 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHA   30 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            4567999999999999999999998753

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.14  E-value=0.00028  Score=60.09  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=23.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++|.||||+||||+++.|++.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999998874

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.14  E-value=0.0024  Score=54.08  Aligned_cols=30  Identities=20%  Similarity=0.045  Sum_probs=25.1

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      ...+++|+++|.|||++|-.+|-.....|.
T Consensus        28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~   57 (196)
T 1g5t_A           28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK   57 (196)
T ss_dssp             CCCEEEEESSSSCHHHHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            457899999999999999999887755554

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.14  E-value=0.00042  Score=59.14  Aligned_cols=26  Identities=15%  Similarity=0.318  Sum_probs=22.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+.-++|.||+|+|||++++.|....
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            45668899999999999999998764

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=97.14  E-value=0.00032  Score=59.33  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=20.8

Q ss_pred             ceEEecCCCCCHH-HHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKT-MVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT-~la~~la~~l~~  225 (438)
                      -.++|||.|+||| .|.+++.+....
T Consensus        22 l~fiyG~MgsGKTt~Ll~~i~n~~~~   47 (195)
T 1w4r_A           22 IQVILGPMFSGKSTELMRRVRRFQIA   47 (195)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence            4668999999999 899998887653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.12  E-value=0.00024  Score=59.42  Aligned_cols=25  Identities=28%  Similarity=0.519  Sum_probs=22.6

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..+.|.||||+||||+++.++..++
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999999764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.10  E-value=0.00031  Score=59.68  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=23.7

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..++|.||||+||||+++.|++.++.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999998874

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.10  E-value=0.00049  Score=65.06  Aligned_cols=99  Identities=14%  Similarity=0.210  Sum_probs=52.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-ccccchHHHHHHHHHccC-cEEEEeCcccccCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEG-GILFVDEAYRLIPM  277 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~-~il~iDEid~l~~~  277 (438)
                      +-+++.||+|+|||++|..+|+.+..       .++..+...+... .+|.. +..   .++-.+ .=-|||..+   +.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~-------~iis~Ds~QvYr~l~i~T~-kp~---~~E~~gv~hhlid~~~---~~   68 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNG-------EVINSDSMQVYKDIPIITN-KHP---LQEREGIPHHVMNHVD---WS   68 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTE-------EEEECCTTTTBSSCTTTTT-CCC---GGGTTTCCEESCSCBC---TT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCC-------eEeecCccceecccccccC-CCC---HHHHcCchhhcCCccC---hH
Confidence            45789999999999999999998753       3444333212111 11110 000   011111 345666654   11


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCCEEEEEecCChh
Q 013706          278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP  312 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~  312 (438)
                      ..-+...+...+...+-.....+++.|+..++.--
T Consensus        69 ~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTglY  103 (409)
T 3eph_A           69 EEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYY  103 (409)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGGG
T ss_pred             hHhhHHHHHHHHHHHHHHHHhcCCCEEEECChHHH
Confidence            11122445555655555556667777766655433

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.09  E-value=0.00024  Score=60.69  Aligned_cols=28  Identities=18%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..++|.|+||+||||+|+.+++.++.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~   35 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY   35 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3567899999999999999999998753

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.09  E-value=0.00026  Score=59.11  Aligned_cols=26  Identities=35%  Similarity=0.441  Sum_probs=23.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..++|.|+||+|||++|+.+++.++.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~   28 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGY   28 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46899999999999999999998754

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.09  E-value=0.0012  Score=63.11  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=20.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +..-++|+||||+|||+|++.++-
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHH
Confidence            445688999999999999998764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.08  E-value=0.00032  Score=60.34  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=23.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..++|.||||+||||+|+.|++.++.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~   44 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGY   44 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457899999999999999999998743

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.07  E-value=0.0075  Score=66.48  Aligned_cols=152  Identities=13%  Similarity=0.198  Sum_probs=82.2

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH-cCCcCCCC-EEEee
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM-VGILPTDR-VTEVQ  238 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~-~~~~~~~~-~~~~~  238 (438)
                      ...++|.+...++|.+.+...              ...+.-+.++|++|+|||+||+.+++.... ........ ++.+.
T Consensus       123 ~~~~vgR~~~~~~l~~~l~~~--------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~  188 (1249)
T 3sfz_A          123 PVIFVTRKKLVHAIQQKLWKL--------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG  188 (1249)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTT--------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred             CceeccHHHHHHHHHHHHhhc--------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence            356899998888888764211              123455789999999999999988765322 11111111 33333


Q ss_pred             ccc---cc-------ccc---------cccchHHHHHHHHH-----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          239 RTD---LV-------GEF---------VGHTGPKTRRRIKE-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       239 ~~~---~~-------~~~---------~g~~~~~~~~~~~~-----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                      ...   ..       ...         .......+...+..     .+..+|+||+++..                . .+
T Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------------~-~~  251 (1249)
T 3sfz_A          189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------------W-VL  251 (1249)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------H-HH
T ss_pred             CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------H-HH
Confidence            211   00       000         01112223333332     23689999999743                1 22


Q ss_pred             hhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCC-CCHHHHHHHHHHHHhc
Q 013706          295 SVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND-FNSEELAKILHIKMNN  351 (438)
Q Consensus       295 ~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~-~~~~e~~~il~~~l~~  351 (438)
                      ..+..+ ..||.||......      .. .......+.+++ ++.+|-.+++..+...
T Consensus       252 ~~~~~~-~~ilvTtR~~~~~------~~-~~~~~~~~~~~~~l~~~~a~~l~~~~~~~  301 (1249)
T 3sfz_A          252 KAFDNQ-CQILLTTRDKSVT------DS-VMGPKHVVPVESGLGREKGLEILSLFVNM  301 (1249)
T ss_dssp             TTTCSS-CEEEEEESSTTTT------TT-CCSCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred             HhhcCC-CEEEEEcCCHHHH------Hh-hcCCceEEEecCCCCHHHHHHHHHHhhCC
Confidence            223333 3555555443321      00 112235677775 9999999999877643

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.07  E-value=0.00024  Score=63.16  Aligned_cols=27  Identities=30%  Similarity=0.411  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ++..++|.||||+||||+|+.|++.++
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            566799999999999999999998774

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.07  E-value=0.00046  Score=62.02  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=24.7

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      +..++|.|+||+|||++|+.+++.+...+
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g   32 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNN   32 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence            45689999999999999999999876443

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.07  E-value=0.002  Score=54.71  Aligned_cols=73  Identities=15%  Similarity=0.051  Sum_probs=41.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc-------cccccccccc-----hHHHHHHHHHcc--CcE
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-------DLVGEFVGHT-----GPKTRRRIKEAE--GGI  265 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-------~~~~~~~g~~-----~~~~~~~~~~a~--~~i  265 (438)
                      .-.+++||+|+|||+.+-.++..+...+.    .++.+.+.       ..+.+..|..     .....++++...  .-+
T Consensus         9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~----kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dv   84 (191)
T 1xx6_A            9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQ----KIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEV   84 (191)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCC----EEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCE
Confidence            34678999999999988888887754332    22222111       0111111210     011125566554  369


Q ss_pred             EEEeCcccccC
Q 013706          266 LFVDEAYRLIP  276 (438)
Q Consensus       266 l~iDEid~l~~  276 (438)
                      |+|||+..+.+
T Consensus        85 ViIDEaqfl~~   95 (191)
T 1xx6_A           85 IAIDEVQFFDD   95 (191)
T ss_dssp             EEECSGGGSCT
T ss_pred             EEEECCCCCCH
Confidence            99999988753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.06  E-value=0.00036  Score=61.60  Aligned_cols=28  Identities=29%  Similarity=0.466  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..++|.|+||+|||++|+.|++.++.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~   42 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV   42 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4567999999999999999999998753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.05  E-value=0.00022  Score=62.23  Aligned_cols=27  Identities=19%  Similarity=0.460  Sum_probs=23.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..++|.|+||+||||+|+.|++.++.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~   31 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGL   31 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence            457899999999999999999998753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.03  E-value=0.00039  Score=60.82  Aligned_cols=28  Identities=18%  Similarity=0.383  Sum_probs=24.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..++|.||||+||||+++.|++.++.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~   31 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQL   31 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4567999999999999999999998753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.03  E-value=0.00029  Score=59.28  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      ..++|.||||+||||+|+.+++
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3588999999999999999998

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.02  E-value=0.00066  Score=62.71  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ++.++|.||+|+|||+||..||+.++
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCC
Confidence            34688999999999999999999764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.02  E-value=0.00025  Score=60.52  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +..++|.|+||+||||+|+.+++.++
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999999774

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.02  E-value=0.00086  Score=59.96  Aligned_cols=28  Identities=29%  Similarity=0.501  Sum_probs=24.3

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..+..++|.||||+||||+|+.+++.+.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3456789999999999999999999764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.01  E-value=0.00024  Score=60.00  Aligned_cols=27  Identities=33%  Similarity=0.283  Sum_probs=19.8

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..++|.|+||+||||+|+.+++.++.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~~   31 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLPG   31 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            457899999999999999999987754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.01  E-value=0.0012  Score=62.04  Aligned_cols=96  Identities=15%  Similarity=0.194  Sum_probs=53.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee-cccc--------c-ccccccchHHHHHHHHHc---cCcE
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ-RTDL--------V-GEFVGHTGPKTRRRIKEA---EGGI  265 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~~--------~-~~~~g~~~~~~~~~~~~a---~~~i  265 (438)
                      ...+++.||+|+||||+.++++..+....   .+.++.+. +.++        + ...++.........+..+   .+-+
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~---~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdv  199 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTK---YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDI  199 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHHHHC---CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccCCC---CcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCE
Confidence            34688999999999999999999886431   01111111 1111        1 111222112233344443   6799


Q ss_pred             EEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706          266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  311 (438)
Q Consensus       266 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~  311 (438)
                      |++||+-.             .++...+++....+.. +++++...
T Consensus       200 illDEp~d-------------~e~~~~~~~~~~~G~~-vl~t~H~~  231 (356)
T 3jvv_A          200 ILVGEMRD-------------LETIRLALTAAETGHL-VFGTLHTT  231 (356)
T ss_dssp             EEESCCCS-------------HHHHHHHHHHHHTTCE-EEEEESCS
T ss_pred             EecCCCCC-------------HHHHHHHHHHHhcCCE-EEEEEccC
Confidence            99999841             2444556666666665 45554433

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.01  E-value=0.0012  Score=61.98  Aligned_cols=26  Identities=23%  Similarity=0.149  Sum_probs=21.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-++++||||+|||++|..++...
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34457899999999999999998753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.00  E-value=0.00053  Score=59.44  Aligned_cols=31  Identities=26%  Similarity=0.289  Sum_probs=26.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      .+..|+|.|+||+||||+++.+++.+...++
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~   38 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGH   38 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            4567899999999999999999999876543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.00  E-value=0.00036  Score=57.96  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=22.6

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++|.|+||+|||++|+.+++.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~   26 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNI   26 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5889999999999999999998754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.00  E-value=0.00061  Score=57.63  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=20.9

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +.++|.||+|+|||+|++.+.+..
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358999999999999999987754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.98  E-value=0.00034  Score=59.85  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=23.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +..++|.|+||+||||+|+.+++.++
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999999875

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.98  E-value=0.00066  Score=58.74  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=26.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      .+..++|.|+||+||||+++.+++.++..++
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~   39 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV   39 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            3567899999999999999999999886543

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.96  E-value=0.00025  Score=60.42  Aligned_cols=25  Identities=32%  Similarity=0.586  Sum_probs=21.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      .+..+.|.||||+||||+++.|+..
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4456889999999999999999874

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.96  E-value=0.00032  Score=59.38  Aligned_cols=25  Identities=40%  Similarity=0.546  Sum_probs=22.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..++|.||||+||||+++.+++.++
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999998774

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.96  E-value=0.00028  Score=62.00  Aligned_cols=27  Identities=26%  Similarity=0.431  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .+..++|.||||+||||+|+.|++.++
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            456799999999999999999998764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.95  E-value=0.00038  Score=60.56  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.2

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++|.||||+||||+|+.+++.++.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~   26 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEI   26 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999987743

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.95  E-value=0.00038  Score=59.18  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=23.1

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +..++|.|+||+||||+|+.+++.++
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999999774

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.94  E-value=0.0037  Score=56.02  Aligned_cols=28  Identities=14%  Similarity=0.201  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +...+++.||+|+||||+.++++..+..
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence            3446889999999999999999998754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.93  E-value=0.00051  Score=57.55  Aligned_cols=26  Identities=27%  Similarity=0.383  Sum_probs=22.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +..++|.||||+||||+++.++..++
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~g   33 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQLH   33 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence            44688999999999999999998763

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.93  E-value=0.00032  Score=61.07  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .++|.||||+||||+|+.|++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999998764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.93  E-value=0.00093  Score=56.57  Aligned_cols=30  Identities=37%  Similarity=0.477  Sum_probs=25.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .+..++|.|+||+||||+++.++..+...+
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~   41 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEG   41 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence            445688999999999999999999987533

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.91  E-value=0.0011  Score=64.99  Aligned_cols=76  Identities=12%  Similarity=0.103  Sum_probs=47.1

Q ss_pred             EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHH
Q 013706          265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKI  344 (438)
Q Consensus       265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~i  344 (438)
                      +|+|||+..+....    .....+.+..|.+.-..-.+.+|++|.....+.+   +..++.-|+.+|.|...+..+...|
T Consensus       300 vlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl---~~~i~~n~~~RI~lrv~s~~dsr~i  372 (512)
T 2ius_A          300 VVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPSVDVI---TGLIKANIPTRIAFTVSSKIDSRTI  372 (512)
T ss_dssp             EEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTS---CHHHHHHCCEEEEECCSSHHHHHHH
T ss_pred             EEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccc---cHHHHhhcCCeEEEEcCCHHHHHHh
Confidence            89999998876411    1112233444444444445777777665442222   4445667778888988899998888


Q ss_pred             HHH
Q 013706          345 LHI  347 (438)
Q Consensus       345 l~~  347 (438)
                      +..
T Consensus       373 lg~  375 (512)
T 2ius_A          373 LDQ  375 (512)
T ss_dssp             HSS
T ss_pred             cCC
Confidence            753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.91  E-value=0.00034  Score=58.46  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .++|.||||+||||+|+.+ +.++
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g   25 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERG   25 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCC
Confidence            5789999999999999999 5543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.90  E-value=0.00066  Score=58.29  Aligned_cols=30  Identities=30%  Similarity=0.469  Sum_probs=25.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      ++..+.|.||+|+||||+++.++..+...|
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G   53 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQMLYQKG   53 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            455688999999999999999999886533

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.88  E-value=0.00064  Score=58.40  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=23.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ++..+.|.||||+||||+++.|+..+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            45678899999999999999999877

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.87  E-value=0.00042  Score=59.62  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .+..|+|.|+||+||||+++.+++.++
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            455688999999999999999998754

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.85  E-value=0.00058  Score=59.06  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=23.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..|+|.|+||+||||+|+.|++.+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            46889999999999999999998865

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.83  E-value=0.0072  Score=55.11  Aligned_cols=107  Identities=8%  Similarity=0.032  Sum_probs=55.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc----ccccc-----------chHHH-HHHH------
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKT-RRRI------  258 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~-~~~~------  258 (438)
                      -++++||||+|||+++-.++..+...+  ....++.++...-..    +-+|-           +...+ -.+.      
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i  107 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI  107 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence            578999999999999888877664321  012445555543211    11111           11122 1222      


Q ss_pred             HHccCcEEEEeCcccccCCCC--CCCch------hHHHHHHH----HHhhccCCCEEEEEecC
Q 013706          259 KEAEGGILFVDEAYRLIPMQK--ADDKD------YGIEALEE----IMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       259 ~~a~~~il~iDEid~l~~~~~--~~~~~------~~~~~~~~----ll~~~~~~~v~vi~~~~  309 (438)
                      ++....+|+||=+..+.+...  +...+      ...+.+++    |.......++.+|+++.
T Consensus       108 ~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ  170 (333)
T 3io5_A          108 ERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH  170 (333)
T ss_dssp             CTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             hccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence            222458999999999986322  11110      11233333    33445556777777664

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.82  E-value=0.001  Score=64.89  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..-+++.|+||+|||+++..++..+..
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~  229 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVAT  229 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4445889999999999999999987653

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.78  E-value=0.00074  Score=58.67  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=22.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .++|.||||+||||+|+.|++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g   25 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999999774

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.77  E-value=0.00068  Score=58.42  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+..++|.||||+||||+++.|++.+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45678999999999999999999865

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.77  E-value=0.0074  Score=53.11  Aligned_cols=22  Identities=23%  Similarity=0.223  Sum_probs=17.7

Q ss_pred             CCceEEecCCCCCHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la  220 (438)
                      ...+++.||+|+|||++...+.
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHH
Confidence            3579999999999998666553

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.75  E-value=0.0015  Score=55.56  Aligned_cols=27  Identities=41%  Similarity=0.468  Sum_probs=23.3

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .+.|.|+||+||||+++.+++.+...+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g   28 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKG   28 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            478999999999999999999885433

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.73  E-value=0.0016  Score=54.75  Aligned_cols=37  Identities=27%  Similarity=0.286  Sum_probs=28.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      +..+.|.|++|+||||+++.++..+...++    +++.++.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~----~~i~~d~   41 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLDG   41 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEEEEEH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhhCCC----cEEEECC
Confidence            456889999999999999999998753232    5555553

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=96.70  E-value=0.0099  Score=62.87  Aligned_cols=42  Identities=26%  Similarity=0.221  Sum_probs=32.7

Q ss_pred             cChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHH
Q 013706          165 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       165 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +|.+...++|.+.+...               ...+-+.++||+|+|||++|+.+++
T Consensus       131 VGRe~eLeeL~elL~~~---------------d~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          131 VSRLQPYLKLRQALLEL---------------RPAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CCCHHHHHHHHHHHHHC---------------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHhcc---------------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence            78888888887764311               1245688999999999999999985

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.69  E-value=0.0068  Score=55.98  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..-+++.|+||+|||++|..+|.....
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~   94 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSD   94 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4455889999999999999999876643

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.68  E-value=0.001  Score=57.14  Aligned_cols=25  Identities=24%  Similarity=0.484  Sum_probs=22.5

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++|.|+||+||||+++.+++.++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~   26 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGY   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCC
Confidence            4789999999999999999998853

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.66  E-value=0.0017  Score=60.26  Aligned_cols=25  Identities=24%  Similarity=0.205  Sum_probs=21.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      +..-++++||||+|||++|..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3445789999999999999999875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.66  E-value=0.001  Score=58.17  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=21.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .++|.||||+||||+|+.+++.++
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999874

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.62  E-value=0.0013  Score=58.56  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .+..+.|.||||+||||+++.|++.++
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356789999999999999999998774

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.60  E-value=0.0036  Score=61.97  Aligned_cols=29  Identities=34%  Similarity=0.678  Sum_probs=25.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      +.-|+|.|.||+|||++|+.+++.++..+
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~   63 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIG   63 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            34578999999999999999999997644

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.60  E-value=0.0013  Score=57.68  Aligned_cols=28  Identities=39%  Similarity=0.385  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..+.|.||||+|||++++.|++.++.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~   35 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGA   35 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3457889999999999999999998753

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.57  E-value=0.0031  Score=54.16  Aligned_cols=26  Identities=15%  Similarity=-0.061  Sum_probs=20.7

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .+++||.|+|||+.+-.++..+...+
T Consensus        31 ~vitG~MgsGKTT~lL~~a~r~~~~g   56 (214)
T 2j9r_A           31 EVICGSMFSGKSEELIRRVRRTQFAK   56 (214)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            45899999999998888887765443

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=96.57  E-value=0.022  Score=48.60  Aligned_cols=46  Identities=15%  Similarity=0.447  Sum_probs=27.8

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      .+|++||+|.+....      + ...+..++..+.. ..++++.||-++....+
T Consensus       148 ~~lViDEah~~~~~~------~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~  194 (206)
T 1vec_A          148 QMIVLDEADKLLSQD------F-VQIMEDIILTLPKNRQILLYSATFPLSVQKF  194 (206)
T ss_dssp             CEEEEETHHHHTSTT------T-HHHHHHHHHHSCTTCEEEEEESCCCHHHHHH
T ss_pred             CEEEEEChHHhHhhC------c-HHHHHHHHHhCCccceEEEEEeeCCHHHHHH
Confidence            799999999987521      1 2445666666654 44555555555554433

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.56  E-value=0.001  Score=57.08  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=22.7

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..++|.|+||+||||+++.+++.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4678999999999999999999976

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.53  E-value=0.0025  Score=55.55  Aligned_cols=26  Identities=27%  Similarity=0.489  Sum_probs=22.6

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..+-|.||||+||||+|+.|++.++.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g~   34 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFGI   34 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhCC
Confidence            45678999999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.53  E-value=0.0015  Score=57.14  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=22.6

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..+.|.||||+||||+++.+++.++
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g   30 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQ   30 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999999775

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.52  E-value=0.0017  Score=54.68  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..-+.|.||+|+||||+++.++..+
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3468899999999999999998865

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=96.52  E-value=0.0014  Score=56.58  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=20.6

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .++++.+|+|+|||.++-.++...
T Consensus        49 ~~~li~~~tGsGKT~~~~~~~~~~   72 (216)
T 3b6e_A           49 KNIIICLPTGSGKTRVAVYIAKDH   72 (216)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCHHHHHHHHHHHH
Confidence            579999999999999988777654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.51  E-value=0.0024  Score=62.16  Aligned_cols=28  Identities=18%  Similarity=0.164  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..-+++.|+||+|||++|..+|.....
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~  226 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNAAL  226 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4445789999999999999999887653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.49  E-value=0.0017  Score=56.17  Aligned_cols=26  Identities=23%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ++.-+.|.||+|+|||++++.|+..+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            34568899999999999999999865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.49  E-value=0.0016  Score=55.94  Aligned_cols=26  Identities=19%  Similarity=0.194  Sum_probs=22.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ++..+.|.||||+||||+++.|+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45568899999999999999999865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.48  E-value=0.0082  Score=55.75  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=22.1

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ...+++.||+|+||||+.++++..+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4579999999999999999998754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.48  E-value=0.0017  Score=57.67  Aligned_cols=27  Identities=37%  Similarity=0.511  Sum_probs=24.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ...+.|.||||+||||+++.++..++.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~   74 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGY   74 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            457999999999999999999998864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.46  E-value=0.026  Score=51.49  Aligned_cols=28  Identities=21%  Similarity=0.413  Sum_probs=24.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..++|.||+|+||||++..+|..+..
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4567889999999999999999998863

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=96.44  E-value=0.028  Score=48.90  Aligned_cols=46  Identities=17%  Similarity=0.384  Sum_probs=28.4

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      ..|+|||+|.+....      + ...+..++..+.. .+++++.||-++....+
T Consensus       169 ~~lViDEah~~~~~~------~-~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~  215 (228)
T 3iuy_A          169 TYLVIDEADKMLDME------F-EPQIRKILLDVRPDRQTVMTSATWPDTVRQL  215 (228)
T ss_dssp             CEEEECCHHHHHHTT------C-HHHHHHHHHHSCSSCEEEEEESCCCHHHHHH
T ss_pred             eEEEEECHHHHhccc------h-HHHHHHHHHhCCcCCeEEEEEeeCCHHHHHH
Confidence            789999999987532      1 1334555666654 44555566656666544

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=96.42  E-value=0.035  Score=48.07  Aligned_cols=46  Identities=20%  Similarity=0.301  Sum_probs=26.9

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-CEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~v~vi~~~~~~~~~~~  316 (438)
                      .+|++||+|.+.....       ...+..++..+..+ +++++.||-++.+..+
T Consensus       157 ~~iViDEah~~~~~~~-------~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~  203 (224)
T 1qde_A          157 KMFILDEADEMLSSGF-------KEQIYQIFTLLPPTTQVVLLSATMPNDVLEV  203 (224)
T ss_dssp             CEEEEETHHHHHHTTC-------HHHHHHHHHHSCTTCEEEEEESSCCHHHHHH
T ss_pred             cEEEEcChhHHhhhhh-------HHHHHHHHHhCCccCeEEEEEeecCHHHHHH
Confidence            7999999998865321       13345566666543 3555555545554433

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.42  E-value=0.0018  Score=55.99  Aligned_cols=27  Identities=26%  Similarity=0.266  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .+..++|.|+||+||||+++.++..+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            445688999999999999999999886

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.40  E-value=0.0016  Score=55.14  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=19.2

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.||||+||||+++.++.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            467999999999999999987

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.36  E-value=0.0055  Score=54.23  Aligned_cols=25  Identities=28%  Similarity=0.284  Sum_probs=20.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      +..-++++|+||+|||++|-.++..
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4445889999999999999887654

>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B

Probab=96.34  E-value=0.00018  Score=52.00  Aligned_cols=69  Identities=14%  Similarity=0.178  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhh
Q 013706          339 EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDEL  418 (438)
Q Consensus       339 ~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~  418 (438)
                      ++|.+||+.++++.         .+..+++.+.++..+.         +.+|++|.+++..|...+..+         ..
T Consensus         1 ~~R~~Il~~~l~~~---------~~~~~vdl~~lA~~t~---------G~SGADi~~l~~eAa~~ai~~---------~~   53 (82)
T 2dzn_B            1 MERRLIFGTIASKM---------SLAPEADLDSLIIRND---------SLSGAVIAAIMQEAGLRAVRK---------NR   53 (82)
T ss_dssp             -------------C---------EECTTCCSTTTTTSSC---------CCCHHHHHHHHHHHHHHHHHT---------TC
T ss_pred             CHHHHHHHHHHcCC---------CCCCcCCHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHh---------cc
Confidence            46788999888764         3334555555555544         455888899999988877554         23


Q ss_pred             hhccHHHHHHHHHHHH
Q 013706          419 RTITLEDLEAGLKLLL  434 (438)
Q Consensus       419 ~~i~~~d~~~a~~~~~  434 (438)
                      ..|+.+||..|++.+.
T Consensus        54 ~~i~~~df~~Al~~v~   69 (82)
T 2dzn_B           54 YVILQSDLEEAYATQV   69 (82)
T ss_dssp             SEECHHHHHHHHHTTC
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            5799999999999874

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.34  E-value=0.0025  Score=54.80  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=22.6

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+.|.|++|+|||++++.+++.++.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~   28 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGV   28 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC
Confidence            5789999999999999999998763

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.25  E-value=0.0029  Score=54.23  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +.-+.|.||+|+||||+++.++..+
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3457899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.22  E-value=0.0029  Score=54.12  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..+.|.||+|+||||+.+.+...+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4568899999999999999998865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.21  E-value=0.0021  Score=54.77  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .+.|.|++|+||||+++.+++.++
T Consensus        14 iIgltG~~GSGKSTva~~L~~~lg   37 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKYG   37 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            477999999999999999999754

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=96.21  E-value=0.029  Score=49.74  Aligned_cols=46  Identities=22%  Similarity=0.365  Sum_probs=27.4

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      .+|++||+|.+....-       ...+..++..+.. .+++++.||-++.+..+
T Consensus       188 ~~lViDEah~l~~~~~-------~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~  234 (249)
T 3ber_A          188 KYLVMDEADRILNMDF-------ETEVDKILKVIPRDRKTFLFSATMTKKVQKL  234 (249)
T ss_dssp             CEEEECSHHHHHHTTC-------HHHHHHHHHSSCSSSEEEEEESSCCHHHHHH
T ss_pred             CEEEEcChhhhhccCh-------HHHHHHHHHhCCCCCeEEEEeccCCHHHHHH
Confidence            6899999998865311       1334566666654 34555556555555443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.20  E-value=0.0026  Score=54.90  Aligned_cols=28  Identities=29%  Similarity=0.445  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..+.+.||+|+||||+++.|+..+..
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3445779999999999999999998863

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.20  E-value=0.0087  Score=51.93  Aligned_cols=92  Identities=18%  Similarity=0.145  Sum_probs=47.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc-------cccccccccc-----hHHHHHHHHHccC-cEEE
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-------DLVGEFVGHT-----GPKTRRRIKEAEG-GILF  267 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-------~~~~~~~g~~-----~~~~~~~~~~a~~-~il~  267 (438)
                      -.+++||.|+|||+.+-..+......+.    .++.+.+.       .+.+. .|..     -....++++.+.. -+|+
T Consensus        21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~----kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~~~~dvVi   95 (234)
T 2orv_A           21 IQVILGPMFSGKSTELMRRVRRFQIAQY----KCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEALGVAVIG   95 (234)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTTC----CEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHhccCCEEE
Confidence            3568899999999776666555433221    22222211       01110 0110     0011123343333 6999


Q ss_pred             EeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          268 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       268 iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                      |||+.-+..             +.+++..+++..+.||+++-.
T Consensus        96 IDEaQF~~~-------------v~el~~~l~~~gi~VI~~GL~  125 (234)
T 2orv_A           96 IDEGQFFPD-------------IVEFCEAMANAGKTVIVAALD  125 (234)
T ss_dssp             ESSGGGCTT-------------HHHHHHHHHHTTCEEEEECCS
T ss_pred             EEchhhhhh-------------HHHHHHHHHhCCCEEEEEecc
Confidence            999977631             356666666666677777644

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.20  E-value=0.0069  Score=59.30  Aligned_cols=30  Identities=33%  Similarity=0.661  Sum_probs=25.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .+..++|.|.||+|||++++.+++.+...+
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~   67 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG   67 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            345689999999999999999999987643

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.19  E-value=0.0027  Score=54.50  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=19.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+.+.||+|+||||+++.+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            578999999999999999998

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.17  E-value=0.0022  Score=57.27  Aligned_cols=28  Identities=25%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..|.|.|+||+||||+|+.|++.++.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~   48 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ   48 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4456889999999999999999998764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.13  E-value=0.0028  Score=54.28  Aligned_cols=25  Identities=36%  Similarity=0.571  Sum_probs=22.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      .+..+.|.|++|+|||++++.|++.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4556889999999999999999984

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=96.06  E-value=0.015  Score=56.87  Aligned_cols=24  Identities=29%  Similarity=0.180  Sum_probs=20.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .++++.+|+|+|||.++-.++..+
T Consensus       109 ~~~ll~~~TGsGKT~~~l~~i~~~  132 (472)
T 2fwr_A          109 KRGCIVLPTGSGKTHVAMAAINEL  132 (472)
T ss_dssp             TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHc
Confidence            359999999999999987776655

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.06  E-value=0.0039  Score=54.95  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=24.9

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ...+..+.|.|++|+|||++++.+++.++.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~   42 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGF   42 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            345667889999999999999999997753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.05  E-value=0.0028  Score=58.11  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.7

Q ss_pred             CceEEecCCCCCHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~  222 (438)
                      ..++|.|+||+||||+|+.+++.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999999984

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.05  E-value=0.0026  Score=54.67  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+.|.||+|+||||+++.++.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999987

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=96.04  E-value=0.046  Score=48.79  Aligned_cols=46  Identities=20%  Similarity=0.332  Sum_probs=28.3

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-EEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-v~vi~~~~~~~~~~~  316 (438)
                      .+|+|||+|.+....-       ...+..++..+.... ++++-||-++.+..+
T Consensus       203 ~~lViDEah~l~~~~~-------~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~  249 (262)
T 3ly5_A          203 QCLVIDEADRILDVGF-------EEELKQIIKLLPTRRQTMLFSATQTRKVEDL  249 (262)
T ss_dssp             CEEEECSHHHHHHTTC-------HHHHHHHHHHSCSSSEEEEECSSCCHHHHHH
T ss_pred             CEEEEcChHHHhhhhH-------HHHHHHHHHhCCCCCeEEEEEecCCHHHHHH
Confidence            7899999999875311       134566666665543 444455556665544

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.03  E-value=0.0034  Score=55.98  Aligned_cols=26  Identities=27%  Similarity=0.464  Sum_probs=22.8

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ...+.|.||+|+||||+++.|++.++
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            34678999999999999999998774

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.02  E-value=0.023  Score=55.02  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=23.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..-+++.|+||+|||++|-.+|.....
T Consensus       196 ~G~liiIaG~pG~GKTtlal~ia~~~a~  223 (444)
T 3bgw_A          196 RRNFVLIAARPSMGKTAFALKQAKNMSD  223 (444)
T ss_dssp             SSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence            4445889999999999999999887654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.01  E-value=0.004  Score=54.66  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+.-++|.||||+||||+++.+++.+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            3445789999999999999999998864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.99  E-value=0.0032  Score=58.34  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=22.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      -+++.||+|+|||++|+.||+.++
T Consensus         9 lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCcCcHHHHHHHHHHHcC
Confidence            578999999999999999999875

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.98  E-value=0.015  Score=53.21  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++.-++|.||+|+||||++..+|..+..
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~  130 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD  130 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence            4456789999999999999999998865

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.96  E-value=0.0039  Score=53.80  Aligned_cols=27  Identities=33%  Similarity=0.506  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ++.-+.|.||+|+||||+++.|+..+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344577999999999999999999875

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.96  E-value=0.0076  Score=58.16  Aligned_cols=27  Identities=22%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ....++|+||||+|||+|+..++....
T Consensus       150 kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          150 KGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             TTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            345799999999999999999987664

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.94  E-value=0.002  Score=55.72  Aligned_cols=25  Identities=24%  Similarity=0.308  Sum_probs=22.5

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      -+.|.||+|+||||+++.|++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            3789999999999999999998864

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=95.94  E-value=0.044  Score=46.74  Aligned_cols=19  Identities=26%  Similarity=0.354  Sum_probs=15.9

Q ss_pred             CceEEecCCCCCHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARI  218 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~  218 (438)
                      .++++.+|+|+|||..+-.
T Consensus        39 ~~~li~~~TGsGKT~~~~~   57 (207)
T 2gxq_A           39 KDLIGQARTGTGKTLAFAL   57 (207)
T ss_dssp             CCEEEECCTTSCHHHHHHH
T ss_pred             CCEEEECCCCChHHHHHHH
Confidence            5799999999999986443

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=95.93  E-value=0.031  Score=56.44  Aligned_cols=29  Identities=28%  Similarity=0.252  Sum_probs=23.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      ..++++.+|+|+|||.++-.++..+...+
T Consensus       198 ~~~~ll~~~TGsGKT~~~~~~~~~l~~~~  226 (590)
T 3h1t_A          198 KKRSLITMATGTGKTVVAFQISWKLWSAR  226 (590)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCceEEEecCCCChHHHHHHHHHHHHhcc
Confidence            35789999999999999888877765433

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.92  E-value=0.0042  Score=53.90  Aligned_cols=27  Identities=26%  Similarity=0.385  Sum_probs=23.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..+.|.|+||+|||++++.+++.++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~   29 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSM   29 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            356889999999999999999997653

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=95.91  E-value=0.046  Score=47.18  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=18.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~  222 (438)
                      .++++.+|+|+|||..+-..+..
T Consensus        52 ~~~li~~~TGsGKT~~~~~~~~~   74 (220)
T 1t6n_A           52 MDVLCQAKSGMGKTAVFVLATLQ   74 (220)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCchhhhhhHHHHH
Confidence            56999999999999876555443

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=95.90  E-value=0.057  Score=55.86  Aligned_cols=19  Identities=21%  Similarity=0.242  Sum_probs=17.0

Q ss_pred             CCceEEecCCCCCHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVAR  217 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~  217 (438)
                      ..++++.||+|+|||+.+-
T Consensus        39 ~~~~lv~apTGsGKT~~~~   57 (720)
T 2zj8_A           39 GKNALISIPTASGKTLIAE   57 (720)
T ss_dssp             TCEEEEECCGGGCHHHHHH
T ss_pred             CCcEEEEcCCccHHHHHHH
Confidence            5789999999999999884

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.89  E-value=0.0036  Score=56.85  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +..|.|.|+||+||||+|+.++.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            44588999999999999999994

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.86  E-value=0.0033  Score=53.25  Aligned_cols=25  Identities=24%  Similarity=0.175  Sum_probs=21.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ...++|.||||+|||++|..+++..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4579999999999999999998743

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.86  E-value=0.0075  Score=49.90  Aligned_cols=29  Identities=17%  Similarity=0.072  Sum_probs=24.8

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .+-+.|.|++|+|||+++..++..+...+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g   32 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREG   32 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence            45688999999999999999999886544

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.86  E-value=0.023  Score=54.74  Aligned_cols=29  Identities=28%  Similarity=0.400  Sum_probs=25.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      .+..++|.|+||+|||+++..+|..+...
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~  126 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKR  126 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            45679999999999999999999988543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.85  E-value=0.0046  Score=53.77  Aligned_cols=27  Identities=19%  Similarity=0.220  Sum_probs=22.7

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+..-+.|.||+|+||||+++.|+..+
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            345568899999999999999999855

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.84  E-value=0.016  Score=59.22  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=17.3

Q ss_pred             CceEEecCCCCCHHHH-HHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMV-ARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~l-a~~la~~l  223 (438)
                      .-.|+.||||||||++ +..|+..+
T Consensus       206 ~~~lI~GPPGTGKT~ti~~~I~~l~  230 (646)
T 4b3f_X          206 ELAIIHGPPGTGKTTTVVEIILQAV  230 (646)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999964 44444444

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.84  E-value=0.0045  Score=53.25  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+.-+.+.||||+||||+++.|+..+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            34457799999999999999999754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.82  E-value=0.0069  Score=58.29  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=21.8

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +.-++|.|+||+|||++|+.+++.+
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhc
Confidence            4557899999999999999998865

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=95.79  E-value=0.079  Score=48.36  Aligned_cols=47  Identities=15%  Similarity=0.241  Sum_probs=29.4

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      .+|+|||+|.+....+      ....+..++..+.. .+++++-||-++.+..+
T Consensus       237 ~~lVlDEad~l~~~~~------~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~  284 (300)
T 3fmo_B          237 KVFVLDEADVMIATQG------HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKF  284 (300)
T ss_dssp             SEEEETTHHHHHHSTT------HHHHHHHHHTTSCTTCEEEEEESCCCHHHHHH
T ss_pred             eEEEEeCHHHHhhccC------cHHHHHHHHHhCCCCCEEEEEeccCCHHHHHH
Confidence            7999999999874211      12334556666654 44666667767766544

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=95.78  E-value=0.077  Score=50.09  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=18.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la  220 (438)
                      .+.++++.+|+|+|||..+-..+
T Consensus        43 ~~~~~lv~a~TGsGKT~~~~~~~   65 (395)
T 3pey_A           43 PPRNMIAQSQSGTGKTAAFSLTM   65 (395)
T ss_dssp             SCCCEEEECCTTSCHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHH
Confidence            34789999999999998665443

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=95.77  E-value=0.05  Score=47.70  Aligned_cols=18  Identities=28%  Similarity=0.254  Sum_probs=15.3

Q ss_pred             CceEEecCCCCCHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVAR  217 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~  217 (438)
                      .++++.+|+|+|||..+-
T Consensus        68 ~~~li~apTGsGKT~~~~   85 (237)
T 3bor_A           68 YDVIAQAQSGTGKTATFA   85 (237)
T ss_dssp             CCEEECCCSSHHHHHHHH
T ss_pred             CCEEEECCCCCcHHHHHH
Confidence            579999999999997643

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=95.77  E-value=0.058  Score=47.47  Aligned_cols=18  Identities=22%  Similarity=0.320  Sum_probs=15.4

Q ss_pred             CceEEecCCCCCHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVAR  217 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~  217 (438)
                      .++++.+|+|+|||..+-
T Consensus        67 ~~~l~~a~TGsGKT~~~~   84 (245)
T 3dkp_A           67 RELLASAPTGSGKTLAFS   84 (245)
T ss_dssp             CCEEEECCTTSCHHHHHH
T ss_pred             CCEEEECCCCCcHHHHHH
Confidence            579999999999998643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.74  E-value=0.0048  Score=51.36  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=17.9

Q ss_pred             CCceEEecCCCCCHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARIL  219 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~l  219 (438)
                      +.-+.|.||+|+||||+++.+
T Consensus         9 gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            445789999999999999963

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.74  E-value=0.011  Score=54.08  Aligned_cols=29  Identities=31%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++.-+.|.||+|+||||+++.+|..+..
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            34456789999999999999999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.74  E-value=0.034  Score=54.08  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=24.9

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ...+.-++|.||+|+||||+++.|+..+..
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~  319 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ  319 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence            334556789999999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.73  E-value=0.0057  Score=52.38  Aligned_cols=28  Identities=25%  Similarity=0.213  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+.-+.+.||+|+||||+++.++..+..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3445779999999999999999998754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.68  E-value=0.0028  Score=58.85  Aligned_cols=28  Identities=14%  Similarity=0.056  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..-+++.|+||+|||++|..+|..+..
T Consensus        45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~   72 (338)
T 4a1f_A           45 KGSLVIIGARPSMGKTSLMMNMVLSALN   72 (338)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4445889999999999999999887654

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.67  E-value=0.009  Score=52.50  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      .+.-|+|.|++|+||||+++.+++.+...++
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~   56 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGI   56 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            3456889999999999999999999987554

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.67  E-value=0.036  Score=55.01  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=21.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHH--HHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARIL--GRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~l--a~~l  223 (438)
                      +...++|.||+|+|||++++.+  +..+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~   65 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQFLYNGII   65 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4556889999999999999994  4444

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=95.67  E-value=0.062  Score=47.22  Aligned_cols=46  Identities=17%  Similarity=0.361  Sum_probs=28.4

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      ..|+|||+|.+....      + ...+..++..+.. .+++++.||-++.+..+
T Consensus       178 ~~lViDEah~l~~~~------~-~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~  224 (242)
T 3fe2_A          178 TYLVLDEADRMLDMG------F-EPQIRKIVDQIRPDRQTLMWSATWPKEVRQL  224 (242)
T ss_dssp             CEEEETTHHHHHHTT------C-HHHHHHHHTTSCSSCEEEEEESCCCHHHHHH
T ss_pred             cEEEEeCHHHHhhhC------c-HHHHHHHHHhCCccceEEEEEeecCHHHHHH
Confidence            689999999987522      1 1344566666654 34555556656555544

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.66  E-value=0.0059  Score=52.97  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +..+.|.|++|+||||+++.+++
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999987

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=95.66  E-value=0.044  Score=47.30  Aligned_cols=46  Identities=30%  Similarity=0.372  Sum_probs=27.9

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-CEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~v~vi~~~~~~~~~~~  316 (438)
                      .+|++||+|.+.....       ...+..++..+..+ +++++.||-++.+..+
T Consensus       152 ~~lViDEah~~~~~~~-------~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~  198 (219)
T 1q0u_A          152 HILVVDEADLMLDMGF-------ITDVDQIAARMPKDLQMLVFSATIPEKLKPF  198 (219)
T ss_dssp             CEEEECSHHHHHHTTC-------HHHHHHHHHTSCTTCEEEEEESCCCGGGHHH
T ss_pred             eEEEEcCchHHhhhCh-------HHHHHHHHHhCCcccEEEEEecCCCHHHHHH
Confidence            7899999999874221       13345666666543 4555556555555443

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.65  E-value=0.0075  Score=52.16  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=25.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      +.-|+|.||+|+||||+++.+++.+...++
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~   35 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGI   35 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            345789999999999999999999976543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.63  E-value=0.0077  Score=54.80  Aligned_cols=28  Identities=25%  Similarity=0.363  Sum_probs=24.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+.-+.+.||+|+||||+++.|+..+..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4455779999999999999999998865

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=95.63  E-value=0.0096  Score=57.08  Aligned_cols=23  Identities=26%  Similarity=0.166  Sum_probs=18.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      .+-.++.|+||||||++...++.
T Consensus       161 ~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          161 AKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHCC
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhc
Confidence            33467899999999999877653

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=95.62  E-value=0.048  Score=47.54  Aligned_cols=47  Identities=21%  Similarity=0.360  Sum_probs=28.5

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      .+|++||+|.+.....     + ...+..++..+.. .+++++.||-++.+..+
T Consensus       168 ~~lViDEah~~~~~~~-----~-~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~  215 (230)
T 2oxc_A          168 RLFILDEADKLLEEGS-----F-QEQINWIYSSLPASKQMLAVSATYPEFLANA  215 (230)
T ss_dssp             CEEEESSHHHHHSTTS-----S-HHHHHHHHHHSCSSCEEEEEESCCCHHHHHH
T ss_pred             CEEEeCCchHhhcCcc-----h-HHHHHHHHHhCCCCCeEEEEEeccCHHHHHH
Confidence            5899999999975320     1 1344566666654 34555556655555443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.61  E-value=0.0086  Score=54.72  Aligned_cols=28  Identities=36%  Similarity=0.618  Sum_probs=24.1

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .++...+.|.||+|+|||||++.|+..+
T Consensus       123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3455668899999999999999999977

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=95.58  E-value=0.076  Score=55.96  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=54.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH--HcCCcCCCCEEEeec----------cccccccccc---chHHHHHHHHHc-c
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY--MVGILPTDRVTEVQR----------TDLVGEFVGH---TGPKTRRRIKEA-E  262 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~--~~~~~~~~~~~~~~~----------~~~~~~~~g~---~~~~~~~~~~~a-~  262 (438)
                      ..-++|.||.|+||||+.|.++....  ..+.........+..          .+........   ....+..++..+ .
T Consensus       673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~  752 (918)
T 3thx_B          673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS  752 (918)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred             CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence            34578999999999999999986432  122111111111111          1111110110   112223334433 5


Q ss_pred             CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc-cCCCEEEEEecCChhHH
Q 013706          263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-DGGKVVVIFAGYSEPMK  314 (438)
Q Consensus       263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~-~~~~v~vi~~~~~~~~~  314 (438)
                      +.+|++||.-+=.      .......+...++..+ +.....+|++|....+.
T Consensus       753 p~LlLLDEP~~Gl------D~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~  799 (918)
T 3thx_B          753 QSLVILDELGRGT------STHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC  799 (918)
T ss_dssp             TCEEEEESTTTTS------CHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             CCEEEEeCCCCCC------CHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence            6999999984322      1223334445667666 33345666676654443

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=95.57  E-value=0.12  Score=45.14  Aligned_cols=46  Identities=17%  Similarity=0.350  Sum_probs=28.1

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-EEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-v~vi~~~~~~~~~~~  316 (438)
                      ..|++||+|.+.....       ...+..++..+..+. ++++.||-++.+..+
T Consensus       173 ~~lViDEah~~~~~~~-------~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~  219 (236)
T 2pl3_A          173 QMLVLDEADRILDMGF-------ADTMNAVIENLPKKRQTLLFSATQTKSVKDL  219 (236)
T ss_dssp             CEEEETTHHHHHHTTT-------HHHHHHHHHTSCTTSEEEEEESSCCHHHHHH
T ss_pred             cEEEEeChHHHhcCCc-------HHHHHHHHHhCCCCCeEEEEEeeCCHHHHHH
Confidence            6899999998864211       134466666665544 555555555555544

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.56  E-value=0.056  Score=49.82  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=25.2

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      .++.-+++.||+|+||||++..+|..+...
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~  132 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAEL  132 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            345568899999999999999999988653

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.55  E-value=0.058  Score=56.95  Aligned_cols=110  Identities=18%  Similarity=0.146  Sum_probs=54.4

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH--HHcCCcCCCCEEEeeccccccccccc-------------chHHHHHHHHHc-cC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL--YMVGILPTDRVTEVQRTDLVGEFVGH-------------TGPKTRRRIKEA-EG  263 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~a-~~  263 (438)
                      .-++|.||.|+||||+.|.++-..  ...|.........+...+-+-..+|-             ....+..++..+ .+
T Consensus       663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~  742 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKD  742 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCC
Confidence            347899999999999999996533  21222111111111111100001111             011223344434 45


Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKR  315 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~  315 (438)
                      .+|++||.-+=.      .......+...++..+.. ....+|++|....+..
T Consensus       743 sLlLLDEp~~Gl------D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~  789 (934)
T 3thx_A          743 SLIIIDELGRGT------STYDGFGLAWAISEYIATKIGAFCMFATHFHELTA  789 (934)
T ss_dssp             CEEEEESCSCSS------CHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGG
T ss_pred             cEEEEeCCCCCC------CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHH
Confidence            899999984322      122333444666666643 3456666666544433

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=95.54  E-value=0.044  Score=52.07  Aligned_cols=44  Identities=18%  Similarity=0.301  Sum_probs=26.7

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-CEEEEEecCChhHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMK  314 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~v~vi~~~~~~~~~  314 (438)
                      .+|++||+|.+...       .....+..++..+... .++++.||-+....
T Consensus       165 ~~vIiDEaH~~~~~-------~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~  209 (400)
T 1s2m_A          165 SLFIMDEADKMLSR-------DFKTIIEQILSFLPPTHQSLLFSATFPLTVK  209 (400)
T ss_dssp             CEEEEESHHHHSSH-------HHHHHHHHHHTTSCSSCEEEEEESCCCHHHH
T ss_pred             CEEEEeCchHhhhh-------chHHHHHHHHHhCCcCceEEEEEecCCHHHH
Confidence            79999999988642       1234456666666544 44555555454443

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.54  E-value=0.0075  Score=53.43  Aligned_cols=28  Identities=29%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++.-+-|.||+|+||||+++.|+..++.
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~   51 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQ   51 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            3345779999999999999999997743

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.53  E-value=0.0076  Score=49.40  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-+.|.||.|+||||+.+.++..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            33457899999999999999999876

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=95.52  E-value=0.08  Score=54.71  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la  220 (438)
                      ...++++.||+|+|||+.+-...
T Consensus        45 ~~~~~lv~apTGsGKT~~~~l~i   67 (715)
T 2va8_A           45 EGNRLLLTSPTGSGKTLIAEMGI   67 (715)
T ss_dssp             TTCCEEEECCTTSCHHHHHHHHH
T ss_pred             CCCcEEEEcCCCCcHHHHHHHHH
Confidence            35789999999999999885443

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=95.50  E-value=0.085  Score=48.58  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=17.8

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      .++++.+|+|+|||..+-..+.
T Consensus        32 ~~~lv~~~TGsGKT~~~~~~~~   53 (337)
T 2z0m_A           32 KNVVVRAKTGSGKTAAYAIPIL   53 (337)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEcCCCCcHHHHHHHHHH
Confidence            5799999999999987655543

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.50  E-value=0.0074  Score=51.93  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=22.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ...-+.|.||+|+||||++++|+..+
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34457799999999999999999865

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=95.49  E-value=0.039  Score=51.56  Aligned_cols=23  Identities=22%  Similarity=0.083  Sum_probs=18.6

Q ss_pred             CceEEecCCCCCHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~  222 (438)
                      .++++.+|+|+|||+.+-..+..
T Consensus        45 ~~~l~~~~TGsGKT~~~~~~~~~   67 (367)
T 1hv8_A           45 YNIVAQARTGSGKTASFAIPLIE   67 (367)
T ss_dssp             SEEEEECCSSSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCChHHHHHHHHHHH
Confidence            58999999999999887655443

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.48  E-value=0.0092  Score=51.86  Aligned_cols=26  Identities=15%  Similarity=0.172  Sum_probs=22.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ...-+.|.||+|+|||||.+.++..+
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            34467899999999999999998865

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.48  E-value=0.007  Score=51.87  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=23.4

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .-|.+.||+|+|||++++.+|+.++.
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~   32 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNI   32 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence            35789999999999999999999875

>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20

Probab=95.45  E-value=0.017  Score=42.22  Aligned_cols=87  Identities=15%  Similarity=0.066  Sum_probs=64.3

Q ss_pred             CCCCHHHHHHHHHHHHhccccccccccc-cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccC-C
Q 013706          334 NDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-D  411 (438)
Q Consensus       334 ~~~~~~e~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~-~  411 (438)
                      +.|+.+|...|.++||-....  ...|+ .-...++++++..++++|+     +.-.+|.|...+....|+++.++.. +
T Consensus         1 sGYt~~EK~~IAk~~LiPkql--~~~GL~~~~~~i~d~al~~iI~~YT-----REaGVRnLer~i~~i~RK~a~~i~~~~   73 (94)
T 1qzm_A            1 SGYTEDEKLNIAKRHLLPKQI--ERNALKKGELTVDDSAIIGIIRYYT-----REAGVRGLEREISKLCRKAVKQLLLDK   73 (94)
T ss_dssp             CCCCHHHHHHHHHHTHHHHHH--HHTTCCTTTEEECHHHHHHHHHHHC-----CCSSSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCCHHHHHHHHHHhccHHHH--HHhCCChhhceECHHHHHHHHHHhc-----ccccchHHHHHHHHHHHHHHHHHHHcC
Confidence            578999999999999976542  33466 3445789999999999998     3445788888888888988888763 2


Q ss_pred             CCChhhhhhccHHHHHHHH
Q 013706          412 CLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       412 ~~~~~~~~~i~~~d~~~a~  430 (438)
                      .   .....|+.+++.+.|
T Consensus        74 ~---~~~v~v~~~~l~~~L   89 (94)
T 1qzm_A           74 S---LKHIEINGDNLHDYL   89 (94)
T ss_dssp             T---CCCEEECTTTTHHHH
T ss_pred             C---CCCeeECHHHHHHHc
Confidence            2   123567888777654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.43  E-value=0.0046  Score=54.27  Aligned_cols=26  Identities=27%  Similarity=0.201  Sum_probs=16.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHH-HHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILG-RLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la-~~l  223 (438)
                      +..-+.|.||+|+||||+++.|+ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            44567899999999999999999 754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.42  E-value=0.011  Score=54.16  Aligned_cols=28  Identities=29%  Similarity=0.361  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..+.|.||+|+||||+++.++..+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3456789999999999999999988753

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.41  E-value=0.015  Score=54.41  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++.-+.|.||+|+||||+++.||..+..
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence            4556789999999999999999998764

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.41  E-value=0.032  Score=55.05  Aligned_cols=28  Identities=7%  Similarity=-0.096  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..-+++.|+||+|||++|-.+|..+..
T Consensus       241 ~G~l~li~G~pG~GKT~lal~~a~~~a~  268 (503)
T 1q57_A          241 GGEVIMVTSGSGMVMSTFVRQQALQWGT  268 (503)
T ss_dssp             TTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence            3445889999999999999999886643

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.40  E-value=0.011  Score=53.89  Aligned_cols=27  Identities=19%  Similarity=0.461  Sum_probs=20.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +.-|.+.||+|+||||+|+.+++.++.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~   31 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRR   31 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            345789999999999999999998864

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=95.39  E-value=0.05  Score=51.90  Aligned_cols=21  Identities=29%  Similarity=0.235  Sum_probs=16.8

Q ss_pred             CceEEecCCCCCHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la  220 (438)
                      .++++.+|+|+|||..+-..+
T Consensus        75 ~~~lv~a~TGsGKT~~~~~~~   95 (410)
T 2j0s_A           75 RDVIAQSQSGTGKTATFSISV   95 (410)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCCCchHHHHHHH
Confidence            579999999999997665433

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.36  E-value=0.014  Score=50.43  Aligned_cols=29  Identities=28%  Similarity=0.383  Sum_probs=25.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      .-|.|.|++|+||||.++.+++.+...++
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~   32 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLGI   32 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            45889999999999999999999987654

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.34  E-value=0.024  Score=57.02  Aligned_cols=37  Identities=30%  Similarity=0.337  Sum_probs=28.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      .+..|+|.|+||+||||+|+.|++.+...+.    +++.++
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~----~~v~lD   87 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLD   87 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEES
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC----eEEEec
Confidence            3456889999999999999999999854332    555554

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.33  E-value=0.011  Score=53.91  Aligned_cols=28  Identities=14%  Similarity=0.076  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +..-++|.||||+|||++++.++..+..
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~   61 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQWGT   61 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4456889999999999999999987754

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=95.32  E-value=0.041  Score=52.40  Aligned_cols=19  Identities=32%  Similarity=0.434  Sum_probs=16.4

Q ss_pred             CCceEEecCCCCCHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVAR  217 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~  217 (438)
                      +.++++.+|+|+|||..+-
T Consensus        64 ~~~~lv~apTGsGKT~~~~   82 (412)
T 3fht_A           64 PQNLIAQSQSGTGKTAAFV   82 (412)
T ss_dssp             CCCEEEECCTTSCHHHHHH
T ss_pred             CCeEEEECCCCchHHHHHH
Confidence            5789999999999998753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.31  E-value=0.01  Score=51.76  Aligned_cols=28  Identities=25%  Similarity=0.231  Sum_probs=21.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      +.-|+|.||+|+||||+++.+++.+...
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            4568899999999999999999999764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.28  E-value=0.012  Score=54.31  Aligned_cols=27  Identities=30%  Similarity=0.461  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .|.-+.|.||+|+||||+++.|+..+.
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344577999999999999999998775

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.28  E-value=0.011  Score=54.38  Aligned_cols=28  Identities=32%  Similarity=0.419  Sum_probs=23.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+.-+.|.||+|+||||+++.|+..+..
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            3445779999999999999999998753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.27  E-value=0.24  Score=48.56  Aligned_cols=30  Identities=27%  Similarity=0.399  Sum_probs=24.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .+..++|.|+||+||||++..||..+...+
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G  129 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG  129 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            456788999999999999999998886544

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.25  E-value=0.017  Score=48.07  Aligned_cols=29  Identities=38%  Similarity=0.440  Sum_probs=24.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .+-+.|.||+|+|||++++.+...+...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g   34 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARG   34 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence            45688999999999999999998876543

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23

Probab=95.25  E-value=0.049  Score=49.19  Aligned_cols=23  Identities=13%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +.++.+|+|+|||.++-.++...
T Consensus       130 ~~ll~~~tGsGKT~~~~~~~~~~  152 (282)
T 1rif_A          130 RRILNLPTSAGRSLIQALLARYY  152 (282)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEcCCCCCcHHHHHHHHHHH
Confidence            46789999999999997776654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.23  E-value=0.0079  Score=53.10  Aligned_cols=26  Identities=23%  Similarity=0.454  Sum_probs=22.8

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +..+.|.|++|+||||+++.+++.+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            34688999999999999999999773

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.16  E-value=0.014  Score=50.80  Aligned_cols=31  Identities=29%  Similarity=0.471  Sum_probs=26.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH-cCC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM-VGI  228 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~-~~~  228 (438)
                      .+.-|.|.|++|+|||++++.+++.+.. .+.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~   51 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGV   51 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCc
Confidence            4456789999999999999999999976 554

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.14  E-value=0.015  Score=50.32  Aligned_cols=27  Identities=30%  Similarity=0.191  Sum_probs=24.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +.-|+|.|++|+||||+++.+++.+..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            456889999999999999999998864

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=95.11  E-value=0.047  Score=53.48  Aligned_cols=19  Identities=32%  Similarity=0.454  Sum_probs=16.4

Q ss_pred             CCCceEEecCCCCCHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVA  216 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la  216 (438)
                      .+.++++.+|+|+|||..+
T Consensus       130 ~~~~~l~~a~TGsGKT~~~  148 (479)
T 3fmp_B          130 PPQNLIAQSQSGTGKTAAF  148 (479)
T ss_dssp             SCCEEEEECCSSSSHHHHH
T ss_pred             CCCcEEEEcCCCCchhHHH
Confidence            4578999999999999764

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19

Probab=95.08  E-value=0.15  Score=45.06  Aligned_cols=19  Identities=26%  Similarity=0.319  Sum_probs=15.8

Q ss_pred             CceEEecCCCCCHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARI  218 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~  218 (438)
                      .++++.+|+|+|||..+-.
T Consensus        61 ~~~l~~a~TGsGKT~~~~~   79 (253)
T 1wrb_A           61 RDIMACAQTGSGKTAAFLI   79 (253)
T ss_dssp             CCEEEECCTTSSHHHHHHH
T ss_pred             CCEEEECCCCChHHHHHHH
Confidence            5799999999999976543

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=95.05  E-value=0.09  Score=49.65  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=18.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ..++++.+|+|+|||..+-..+.
T Consensus        45 ~~~~lv~a~TGsGKT~~~~~~~~   67 (391)
T 1xti_A           45 GMDVLCQAKSGMGKTAVFVLATL   67 (391)
T ss_dssp             TCCEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCcHHHHHHHHHH
Confidence            36799999999999987654443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.03  E-value=0.018  Score=48.53  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ....+++.|++|+|||++...+..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999976

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=95.02  E-value=0.18  Score=52.52  Aligned_cols=24  Identities=17%  Similarity=0.141  Sum_probs=21.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .-++|.||.|+||||+.|.++...
T Consensus       608 ~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            357899999999999999999864

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.01  E-value=0.013  Score=48.28  Aligned_cols=24  Identities=17%  Similarity=0.160  Sum_probs=21.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...++||.||+|+|||++|..+.+
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999999887

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=94.93  E-value=0.13  Score=53.07  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=17.8

Q ss_pred             CCceEEecCCCCCHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARIL  219 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~l  219 (438)
                      ..++++.+|+|+|||+.+-..
T Consensus        40 ~~~~lv~apTGsGKT~~~~l~   60 (702)
T 2p6r_A           40 GKNLLLAMPTAAGKTLLAEMA   60 (702)
T ss_dssp             CSCEEEECSSHHHHHHHHHHH
T ss_pred             CCcEEEEcCCccHHHHHHHHH
Confidence            468999999999999988444

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.91  E-value=0.017  Score=49.86  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      ....++|.|++|+|||++...+...
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5678999999999999999999863

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.91  E-value=0.015  Score=53.85  Aligned_cols=28  Identities=32%  Similarity=0.459  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++.-+.|.||+|+||||+++.|+..+..
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~  155 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKN  155 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4456789999999999999999998764

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=94.90  E-value=0.063  Score=51.16  Aligned_cols=21  Identities=29%  Similarity=0.177  Sum_probs=16.7

Q ss_pred             CceEEecCCCCCHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la  220 (438)
                      .++++.+|+|+|||+.+-..+
T Consensus        78 ~~~lv~a~TGsGKT~~~~~~~   98 (414)
T 3eiq_A           78 YDVIAQAQSGTGKTATFAISI   98 (414)
T ss_dssp             CCEEECCCSCSSSHHHHHHHH
T ss_pred             CCEEEECCCCCcccHHHHHHH
Confidence            469999999999998754433

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=94.86  E-value=0.015  Score=50.65  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=23.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .-|.+.|++|+|||++|+.+|+.++.
T Consensus        15 ~iI~i~g~~gsGk~~i~~~la~~lg~   40 (223)
T 3hdt_A           15 LIITIEREYGSGGRIVGKKLAEELGI   40 (223)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence            35779999999999999999999865

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=94.83  E-value=0.23  Score=53.23  Aligned_cols=21  Identities=24%  Similarity=0.227  Sum_probs=17.5

Q ss_pred             CceEEecCCCCCHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la  220 (438)
                      .++++.+|+|+|||.++....
T Consensus       102 ~~vLV~apTGSGKTlva~lai  122 (1010)
T 2xgj_A          102 ESVLVSAHTSAGKTVVAEYAI  122 (1010)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEECCCCCChHHHHHHHH
Confidence            579999999999999875443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.80  E-value=0.064  Score=49.85  Aligned_cols=27  Identities=37%  Similarity=0.602  Sum_probs=23.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ....+.|.||||+||||+.+.++..+.
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~   80 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLLT   80 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            445678999999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=94.78  E-value=0.0048  Score=55.34  Aligned_cols=26  Identities=31%  Similarity=0.448  Sum_probs=22.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+.-|+|.|++|+||||+++.|++.+
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            45568899999999999999999866

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=94.76  E-value=0.018  Score=52.91  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=22.4

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +.-+.|.||+|+||||+++.|+..+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34577999999999999999998764

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*

Probab=94.76  E-value=0.052  Score=51.37  Aligned_cols=19  Identities=32%  Similarity=0.296  Sum_probs=15.7

Q ss_pred             CceEEecCCCCCHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARI  218 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~  218 (438)
                      .++++.+|+|+|||..+-.
T Consensus        59 ~~~lv~~~TGsGKT~~~~~   77 (394)
T 1fuu_A           59 HDVLAQAQSGTGKTGTFSI   77 (394)
T ss_dssp             CCEEECCCSSHHHHHHHHH
T ss_pred             CCEEEECCCCChHHHHHHH
Confidence            4699999999999987543

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=94.74  E-value=0.017  Score=58.67  Aligned_cols=25  Identities=36%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +..++.||||||||+++..+...+.
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~~l~  220 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVYHLA  220 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999998777766553

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.73  E-value=0.014  Score=57.37  Aligned_cols=27  Identities=4%  Similarity=-0.080  Sum_probs=24.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ...++|.|.+|+||||+|++||+.|+.
T Consensus       395 ~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          395 GFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            356889999999999999999999974

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19

Probab=94.71  E-value=0.17  Score=48.91  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ++++..|+|+|||..+-.++...
T Consensus        25 ~~ll~~~tG~GKT~~~~~~~~~~   47 (494)
T 1wp9_A           25 NCLIVLPTGLGKTLIAMMIAEYR   47 (494)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            89999999999999888876655

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.67  E-value=0.082  Score=49.57  Aligned_cols=64  Identities=11%  Similarity=0.095  Sum_probs=41.2

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeC
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDE  270 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDE  270 (438)
                      ......+++.||||+|||++++.|++.+...+.  ...++        --.+|+....+....+.-+ +++|.--
T Consensus       171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~--~v~~I--------~~lIGER~~Ev~~~~~~~~-~~vV~at  234 (422)
T 3ice_A          171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP--DCVLM--------VLLIDERPEEVTEMQRLVK-GEVVAST  234 (422)
T ss_dssp             CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCT--TSEEE--------EEEESSCHHHHHHHHTTCS-SEEEEEC
T ss_pred             ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCC--CeeEE--------EEEecCChHHHHHHHHHhC-eEEEEeC
Confidence            345668999999999999999999987754221  00111        1246777777766555443 4555433

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.67  E-value=0.017  Score=54.54  Aligned_cols=28  Identities=14%  Similarity=0.201  Sum_probs=24.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +...+++.||+|+||||+.++++..+..
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            3456889999999999999999998764

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=94.63  E-value=0.25  Score=53.48  Aligned_cols=25  Identities=20%  Similarity=0.113  Sum_probs=19.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..++|+.+|+|+|||+++-..+...
T Consensus       199 g~dvLV~ApTGSGKTlva~l~i~~~  223 (1108)
T 3l9o_A          199 GESVLVSAHTSAGKTVVAEYAIAQS  223 (1108)
T ss_dssp             TCCEEEECCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCChHHHHHHHHHHH
Confidence            4689999999999998876554433

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.58  E-value=0.02  Score=47.89  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=21.1

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      -.+|+||.|+|||++.++|.-.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            567999999999999999987664

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.54  E-value=0.012  Score=48.92  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=23.6

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      ..+.|.||+|+||||+++.|+..+...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            357799999999999999999988753

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=94.50  E-value=0.017  Score=54.05  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=22.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-+.|+||||+|||++++.++..+
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            44457899999999999999999865

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.46  E-value=0.016  Score=49.86  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             CceEEecCCCCCHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~  222 (438)
                      ..+.+.||+|+||||+.++++..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            45779999999999999999987

>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}

Probab=94.46  E-value=0.13  Score=50.79  Aligned_cols=24  Identities=13%  Similarity=0.278  Sum_probs=19.9

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .++++.||+|+|||.++-.++...
T Consensus       129 ~~~ll~~~tGsGKT~~~~~~~~~~  152 (510)
T 2oca_A          129 RRRILNLPTSAGRSLIQALLARYY  152 (510)
T ss_dssp             SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHH
Confidence            468999999999999987666554

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.45  E-value=0.022  Score=56.99  Aligned_cols=29  Identities=24%  Similarity=0.228  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMV  226 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~  226 (438)
                      .+..++|.|+||+||||+|+.|++.+...
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~  423 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQ  423 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhccc
Confidence            34568899999999999999999998753

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=94.44  E-value=0.33  Score=46.70  Aligned_cols=47  Identities=23%  Similarity=0.458  Sum_probs=28.0

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc---CCCEEEEEecCChhHHHHh
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD---GGKVVVIFAGYSEPMKRVI  317 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~---~~~v~vi~~~~~~~~~~~~  317 (438)
                      ..|+|||+|.+....      + ...+..++..+.   +.+++++.||-+..+..+.
T Consensus       205 ~~lVlDEah~~~~~g------f-~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~  254 (434)
T 2db3_A          205 RFVVLDEADRMLDMG------F-SEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMA  254 (434)
T ss_dssp             CEEEEETHHHHTSTT------T-HHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHH
T ss_pred             CeEEEccHhhhhccC------c-HHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHH
Confidence            689999999987532      1 133455555542   2445566666666655443

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.40  E-value=0.02  Score=46.40  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      +.+++.|++|+|||++...+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLK   23 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999976

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.39  E-value=0.022  Score=48.10  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~  222 (438)
                      ..+.|.||+|+|||++.+.++..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35789999999999999999863

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.38  E-value=0.021  Score=50.20  Aligned_cols=24  Identities=25%  Similarity=0.577  Sum_probs=20.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +...+.|.||+|+||||+.++|+.
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            445678999999999999999975

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.37  E-value=0.021  Score=50.25  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +...+.|.||+|+||||+.++|+..+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44567899999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=94.36  E-value=0.026  Score=47.28  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=19.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...++|.|++|+|||+|...+..
T Consensus        20 ~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           20 ELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            34699999999999999987765

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*

Probab=94.35  E-value=0.17  Score=48.29  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=17.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      .++++.+|+|+|||.++-..+.
T Consensus        37 ~~~lv~apTGsGKT~~~l~~~~   58 (414)
T 3oiy_A           37 KSFTMVAPTGVGKTTFGMMTAL   58 (414)
T ss_dssp             CCEECCSCSSSSHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHH
Confidence            5899999999999995444433

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.32  E-value=0.044  Score=47.30  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=22.8

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .+.++|.|++|+|||+++..++..+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45789999999999999999988763

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.32  E-value=0.02  Score=49.86  Aligned_cols=24  Identities=29%  Similarity=0.607  Sum_probs=20.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +..-+.|.||+|+||||+.++++.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344577999999999999999975

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.31  E-value=0.025  Score=49.83  Aligned_cols=24  Identities=21%  Similarity=0.517  Sum_probs=20.9

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..+.+.||+|+||||+.++++..+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            567799999999999999998643

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.29  E-value=0.016  Score=57.61  Aligned_cols=28  Identities=32%  Similarity=0.409  Sum_probs=24.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+..+.|.|++|+||||++++|+..+..
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence            3456889999999999999999998863

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.27  E-value=0.025  Score=48.09  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             CceEEecCCCCCHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~  222 (438)
                      ..++|.||+|+|||++.+.++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999863

>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A

Probab=94.24  E-value=0.18  Score=54.00  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=18.6

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .++++.+|+|+|||+++......+
T Consensus        55 ~~vlv~apTGsGKTlv~~~~i~~~   78 (997)
T 4a4z_A           55 DSVFVAAHTSAGKTVVAEYAIAMA   78 (997)
T ss_dssp             CEEEEECCTTSCSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHH
Confidence            589999999999998765544433

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=94.20  E-value=0.29  Score=52.37  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      .-++|.||.|+||||+.|.++-
T Consensus       790 ~i~~ItGpNgsGKSTlLr~iGl  811 (1022)
T 2o8b_B          790 YCVLVTGPNMGGKSTLMRQAGL  811 (1022)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHH
Confidence            4578999999999999999943

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.20  E-value=0.025  Score=47.18  Aligned_cols=21  Identities=24%  Similarity=0.192  Sum_probs=19.1

Q ss_pred             eEEecCCCCCHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~  222 (438)
                      ++++|++|+|||++|+.++..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.19  E-value=0.027  Score=50.64  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ++.+.||+|+||||+.++|+...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999866

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.14  E-value=0.026  Score=48.79  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=20.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +..-+.|.||+|+||||+.++++.
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            445678999999999999999975

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.12  E-value=0.036  Score=55.08  Aligned_cols=29  Identities=31%  Similarity=0.411  Sum_probs=25.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      +..++|.|+||+|||++|+.+++.+...|
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G  400 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQARG  400 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhhcC
Confidence            45688999999999999999999887644

>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19

Probab=94.10  E-value=0.18  Score=52.33  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=19.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      .+.++|+.||+|+|||.++-..+-
T Consensus       388 ~~~~~Ll~a~TGSGKTlvall~il  411 (780)
T 1gm5_A          388 KPMNRLLQGDVGSGKTVVAQLAIL  411 (780)
T ss_dssp             SCCCCEEECCSSSSHHHHHHHHHH
T ss_pred             CCCcEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999988765544

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=94.09  E-value=0.028  Score=58.58  Aligned_cols=25  Identities=36%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +.+++.||||||||+++..+...+.
T Consensus       372 ~~~lI~GppGTGKT~ti~~~i~~l~  396 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIVYHLA  396 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4578999999999988777766654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.08  E-value=0.026  Score=50.44  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=20.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +..-+.|.||+|+||||+.++|+.
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            445577999999999999999975

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=94.06  E-value=0.25  Score=51.06  Aligned_cols=24  Identities=17%  Similarity=0.149  Sum_probs=21.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..+++.||.|+||||+.|.++...
T Consensus       577 ~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHhhh
Confidence            347799999999999999999865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.05  E-value=0.035  Score=45.87  Aligned_cols=24  Identities=29%  Similarity=0.602  Sum_probs=21.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ....+++.|++|+|||++...+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            567899999999999999999865

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=94.04  E-value=0.068  Score=45.44  Aligned_cols=27  Identities=30%  Similarity=0.490  Sum_probs=24.2

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      |.|.|+-|+||||.++.+++.|...|.
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~   29 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGK   29 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            678999999999999999999987664

>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}

Probab=94.03  E-value=0.097  Score=55.98  Aligned_cols=46  Identities=22%  Similarity=0.355  Sum_probs=31.7

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF  246 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~  246 (438)
                      ..++||.+|+|+|||..|-.++..+...+.  ..+.+.+-+..++.+|
T Consensus       170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~--~~rvLIVvP~sLl~Qw  215 (968)
T 3dmq_A          170 APRVLLADEVGLGKTIEAGMILHQQLLSGA--AERVLIIVPETLQHQW  215 (968)
T ss_dssp             SCEEEECCCTTSCHHHHHHHHHHHHHHTSS--CCCEEEECCTTTHHHH
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHHHHHhCC--CCeEEEEeCHHHHHHH
Confidence            568999999999999999888877654332  1234445555655544

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.03  E-value=0.025  Score=47.39  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      ..+++.|+||+|||+|.+.++.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999975

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.02  E-value=0.029  Score=46.03  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.7

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      ..+++.|+||+|||++.+.+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3588999999999999999975

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.98  E-value=0.034  Score=49.89  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=21.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      +..-+.|.||+|+||||+.+.|+..
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4456789999999999999999863

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=93.97  E-value=0.031  Score=45.56  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...+++.|++|+|||++...+..
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            45789999999999999999876

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.94  E-value=0.029  Score=50.14  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=21.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      +..-+.|.||+|+||||+.++|+..
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            4456789999999999999999753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.93  E-value=0.068  Score=46.23  Aligned_cols=27  Identities=30%  Similarity=0.372  Sum_probs=23.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ....+++.|++|+|||+++..++....
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            346788999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	438
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-09
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.004
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	1e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-05
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	2e-06
d1jbka_	195	c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia col	5e-06
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	8e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.002
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	1e-05
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	3e-05
d1um8a_	364	c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2	5e-05
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	5e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-04
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	5e-04
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	5e-04
d1r6bx2	268	c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A	7e-04
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	7e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1ny5a2	247	c.37.1.20 (A:138-384) Transcriptional activator si	0.001
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	0.001
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	0.002

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (208), Expect = 2e-18
 Identities = 44/112 (39%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           TPLHV++      IVK+LL+            N+  ETPLHMAA+ G  E AK LL + A
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
            + AKA +  TPLH +            VK LLE NA+ +     G TPL  
Sbjct: 58  KVNAKAKDDQTPLHCAARIG----HTNMVKLLLENNANPNLATTAGHTPLHI 105

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 4e-14
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
            +M  TPLHV++ Y   ++VK    +    + ++ A+   G +PLH AA+ G  +   LL
Sbjct: 294 TRMGYTPLHVASHYGNIKLVK----FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 349

Query: 61  LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 113
           L +GA     +++G TPL ++            +K + +  +     D    +
Sbjct: 350 LKNGASPNEVSSDGTTPLAIAKRLG-YISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 1e-13
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 9/133 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH+ A      +   L++      V ++A    G TPLH+A+  G  +  K LL H 
Sbjct: 265 LTPLHLVAQEGHVPVADVLIKH----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 320

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A + AK   G +PLH     + +      V  LL+  A  +   ++G TPL       G 
Sbjct: 321 ADVNAKTKLGYSPLH----QAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL-GY 375

Query: 125 AKLRELLLWHSEE 137
             + ++L   ++E
Sbjct: 376 ISVTDVLKVVTDE 388

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 1e-13
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 9/132 (6%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
              TPLH++A    AE+V        + +      N  G TPLH+ A+ G    A +L+ 
Sbjct: 230 QGVTPLHLAAQEGHAEMVA----LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
           HG  ++A    G TPLH++  Y     +   VK LL++ AD +AK   G +PL H +   
Sbjct: 286 HGVMVDATTRMGYTPLHVASHY----GNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQ 340

Query: 123 GSAKLRELLLWH 134
           G   +  LLL +
Sbjct: 341 GHTDIVTLLLKN 352

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 2e-13
 Identities = 43/159 (27%), Positives = 58/159 (36%), Gaps = 34/159 (21%)

Query: 5   QTPLHVSAGYNKAEIVKSLLE-----------------------------WPGNDKVELE 35
           QTPLH +A      +VK LLE                                  +    
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 126

Query: 36  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 95
                G TPLH+AAK G    A+LLL   A   A   NG+TPLH     ++   +   VK
Sbjct: 127 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH----VAVHHNNLDIVK 182

Query: 96  TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            LL       +    G TPL H++      ++   LL +
Sbjct: 183 LLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVARSLLQY 220

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 5e-13
 Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 2   QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
           +   TPLHV+A Y K  + + LLE          A    G TPLH+A  +   +  KLLL
Sbjct: 130 KKGFTPLHVAAKYGKVRVAELLLER----DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 185

Query: 62  AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
             G    + A NG TPLH++   +          +LL+Y    +A+  +G TPL  
Sbjct: 186 PRGGSPHSPAWNGYTPLHIAAKQNQVEVAR----SLLQYGGSANAESVQGVTPLHL 237

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 8e-13
 Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 42/163 (25%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH- 63
           +TPLH++A     E+ K LL+     K ++ A+    +TPLH AA+ G     KLLL + 
Sbjct: 34  ETPLHMAARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 89

Query: 64  --------------------------------GAFIEAKANNGMTPLHLSVWYSIRSEDY 91
                                            A        G TPLH++  Y       
Sbjct: 90  ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG----KV 145

Query: 92  ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
              + LLE +A  +A    G TPL H++    +  + +LLL  
Sbjct: 146 RVAELLLERDAHPNAAGKNGLTPL-HVAVHHNNLDIVKLLLPR 187

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 1e-10
 Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 9/130 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLHV+  +N  +IVK LL   G+      +    G TPLH+AAK    E A+ LL +G
Sbjct: 166 LTPLHVAVHHNNLDIVKLLLPRGGS----PHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 221

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
               A++  G+TPLH     + +      V  LL   A+ +  +  G TPL HL    G 
Sbjct: 222 GSANAESVQGVTPLH----LAAQEGHAEMVALLLSKQANGNLGNKSGLTPL-HLVAQEGH 276

Query: 125 AKLRELLLWH 134
             + ++L+ H
Sbjct: 277 VPVADVLIKH 286

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 3e-10
 Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 8/113 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH++A  N+ E+ +SLL++ G+      A+++ G TPLH+AA+ G  E   LLL+  
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGSAN----AESVQGVTPLHLAAQEGHAEMVALLLSKQ 254

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
           A       +G+TPLHL                L+++     A    G TPL  
Sbjct: 255 ANGNLGNKSGLTPLHLVAQEG----HVPVADVLIKHGVMVDATTRMGYTPLHV 303

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 75  MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
           +TPLH++ +          VK LL+  A  +  + + +TPL H++   G  ++ + LL +
Sbjct: 1   LTPLHVASFMG----HLPIVKNLLQRGASPNVSNVKVETPL-HMAARAGHTEVAKYLLQN 55

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 4e-16
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA-AKLLLAH 63
            T L  +A     E++K LL+  G D    +           +++ +   EA   LLL H
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 64  GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGP 122
           GA +  +   G TPL      ++  +    V+ LLE  + + +  D++GKT L  L+   
Sbjct: 209 GADVNVRGERGKTPLI----LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVEL 263

Query: 123 GSAKLRELLLWH 134
              K+ ELL   
Sbjct: 264 KLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 1e-14
 Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 8/141 (5%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLEWPGND------KVELEAQNMYGETPLHMAAKNGCN 54
                T    +A Y K + +K L +   N       K + E     G T L  AA+ G  
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 55  EAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 113
           E  K+LL   GA + A  N G   L  ++  S  S+  A    LL++ AD + +   GKT
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221

Query: 114 PLDHLSNGPGSAKLRELLLWH 134
           PL  L+       L + LL  
Sbjct: 222 PL-ILAVEKKHLGLVQRLLEQ 241

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 5e-13
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +TPL ++       +V+ LLE    +   +   +  G+T L +A +    + A+LL   G
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKRG 276

Query: 65  AFIEAK 70
           A  +  
Sbjct: 277 ASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 39 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWY 84
          +     L  A +N   +  + LL  GA +  +    G TPLH +V  
Sbjct: 3  VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 49

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 4e-05
 Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 9/113 (7%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHG 64
             L  +      ++V+ LLE        +  Q    G TPLH A +    +  +LLL HG
Sbjct: 7   HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
           A    +  NG TP  L+            +       AD +  D  G T    
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFL----SKGADVNECDFYGFTAFME 111

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 35/153 (22%), Positives = 49/153 (32%), Gaps = 44/153 (28%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGND-----------------------------KVELE 35
            TPLH +   ++ +IV+ LL    +                                ++ 
Sbjct: 40  WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99

Query: 36  AQNMYGETPLHMAAKNGCNEAAKLLLAHGA----------FIEAKANNGMTPLHLSVWYS 85
             + YG T    AA  G  +A K L   GA            E     G T L      +
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM----DA 155

Query: 86  IRSEDYATVKTLL-EYNADCSAKDNEGKTPLDH 117
                   +K LL E  AD +A DN G+  L H
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 5e-16
 Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH +A  N+ EI   LLE         +A++ Y  T +H AA  G  +   +LL + 
Sbjct: 104 CTPLHYAASKNRHEIAVMLLEG----GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 159

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
           A    +   G TPLHL+       E     K L+   A    ++ E KTPL     G
Sbjct: 160 ASTNIQDTEGNTPLHLACDE----ERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 212

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 8e-11
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 41/167 (24%)

Query: 8   LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNE------------ 55
           +   A   K E +K  +     DK      +    T LH A   G  E            
Sbjct: 7   VCNLAYSGKLEELKESIL---ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 56  ---------------------AAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATV 94
                                  K LL  GA + A   NG TPLH +   +     +   
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN----RHEIA 119

Query: 95  KTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141
             LLE  A+  AKD+   T + H +   G+ K+  +LL++      +
Sbjct: 120 VMLLEGGANPDAKDHYEATAM-HRAAAKGNLKMIHILLYYKASTNIQ 165

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           ++  +   G  K  I+++L        + L AQ+  G+T L++AA+ G       LL +G
Sbjct: 224 ESKPNDKNGERKDSILENLDLKWIIANM-LNAQDSNGDTCLNIAARLGNISIVDALLDYG 282

Query: 65  AFIEAKANNGMTPLHLSV 82
           A       +G+ P+    
Sbjct: 283 ADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.6 bits (161), Expect = 7e-13
 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL---------EAQNMYGETPLHMAAKNGC 53
           M +T LH     +      +  ++  +  +           ++     E+  +       
Sbjct: 176 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 235

Query: 54  NEAAKLLLAH---GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE 110
           +   + L         + A+ +NG T L+++     R  + + V  LL+Y AD    +  
Sbjct: 236 DSILENLDLKWIIANMLNAQDSNGDTCLNIAA----RLGNISIVDALLDYGADPFIANKS 291

Query: 111 GKTPLD 116
           G  P+D
Sbjct: 292 GLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 3/150 (2%)

Query: 40  YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
           +G TPLH        E  K L+ HG+      N G + L  +V      +       L  
Sbjct: 106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165

Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELEN 159
                  +D+  +T L H+    G         ++ +        +     ++  +E E+
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 160 ELSNIVGLHELKIQ---LRKWAKGMLLDER 186
           + ++  G  +  I      KW    +L+ +
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQ 255

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 8/111 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +  L         E+  SL     N   E  + N   +   H++  +   E         
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSN---QQQQHVSFDSLLQEVNDAFPNTQ 96

Query: 65  AFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTP 114
             +      +G TPLH     +    +   VK L+++ ++    DN G++ 
Sbjct: 97  LNLNIPVDEHGNTPLHWLTSIA----NLELVKHLVKHGSNRLYGDNMGESC 143

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 67.6 bits (164), Expect = 5e-13
 Identities = 17/138 (12%), Positives = 32/138 (23%), Gaps = 16/138 (11%)

Query: 6   TPLHVSAGYNKAEIVKSLL-------EWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 58
             + +    N  ++ + L                +   + +  E    +AA  GC+ A  
Sbjct: 48  IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALD 107

Query: 59  ---LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD--NEGKT 113
              LLL     ++           L+            +  L E            E   
Sbjct: 108 TLCLLLTSDEIVKVIQAENYQAFRLAAENG----HLHVLNRLCELAPTEIMAMIQAENYH 163

Query: 114 PLDHLSNGPGSAKLRELL 131
                +       L  L 
Sbjct: 164 AFRLAAENGHLHVLNRLC 181

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 59.9 bits (144), Expect = 2e-10
 Identities = 14/135 (10%), Positives = 26/135 (19%), Gaps = 11/135 (8%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +    V+A    +  +   L         ++           +AA+NG       L    
Sbjct: 91  EVICFVAAITGCSSALD-TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 149

Query: 65  AFIEAK--ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA---DCSAKDNEGKTPLDHLS 119
                            L+            +  L E          +            
Sbjct: 150 PTEIMAMIQAENYHAFRLAAEN----GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 205

Query: 120 NGPGSAKLRELLLWH 134
              G   +   LL  
Sbjct: 206 G-RGHHNVINFLLDC 219

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)

Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGN-DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
               L         + ++ LL  PG                 L +A + G   A  LLL+
Sbjct: 279 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

Query: 63  HG 64
             
Sbjct: 339 IP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 45.7 bits (107), Expect = 6e-06
 Identities = 13/113 (11%), Positives = 25/113 (22%), Gaps = 13/113 (11%)

Query: 33  ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA-----------FIEAKANNGMTPLHLS 81
            L   +      + +       +  +LL  + A               K         ++
Sbjct: 38  SLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVA 97

Query: 82  VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
                 S    T+  LL  +        E       L+   G   +   L   
Sbjct: 98  AITG-CSSALDTLCLLLTSDEIVKVIQAENYQAF-RLAAENGHLHVLNRLCEL 148

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 13/109 (11%), Positives = 25/109 (22%), Gaps = 14/109 (12%)

Query: 2   QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-----EAQNMYGETPLHMAAKNGCNEA 56
           +    P          E+  +      +   +L       Q  Y    L         + 
Sbjct: 235 EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDD 294

Query: 57  AKLLLAHGAF-----IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
            + LL+               +    L L++    R  +      LL  
Sbjct: 295 IRFLLSIPGIKALAPTATIPGDANELLRLAL----RLGNQGACALLLSI 339

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.7 bits (161), Expect = 7e-13
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T LHV+A     E++K L++   +    +  ++  G TPLH AA  G  EA ++L+ + 
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 65  AFIEAKANNGMTPLHL 80
             +EA    G T   +
Sbjct: 256 CDMEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.4 bits (155), Expect = 4e-12
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 26  WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 85
           W  +  +        G T LH+AA  G  E  KLL+     +  K  +G TPLH +  + 
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243

Query: 86  IRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
                    + L+E   D  A +  G+T  D
Sbjct: 244 ----KEEACRILVENLCDMEAVNKVGQTAFD 270

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 12/44 (27%), Positives = 16/44 (36%)

Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 84
                 A  +G  E    LL  GA I     +G+T LH +   
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 9e-06
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
            TPLH +A + K E  + L+E       ++EA N  G+T   +A ++      +L 
Sbjct: 233 WTPLHAAAHWGKEEACRILVEN----LCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
                +      E V  LLE       ++   N+ G T LH A  +   +  K L+ +GA
Sbjct: 42  AVFLAACSSGDTEEVLRLLE----RGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 66  FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
            I    N G  PLH +             + L+   A   A ++EG TPLD 
Sbjct: 98  NINQPDNEGWIPLHAAASC----GYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH +A  +   IVK L+   G++K +   Q+  G+TP+ +AA+ G  E    L+  G
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDK---QDEDGKTPIMLAAQEGRIEVVMYLIQQG 244

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
           A +EA      T        +  +  +  V      
Sbjct: 245 ASVEAVDATDHTARQ----LAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.8 bits (138), Expect = 5e-10
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 6/108 (5%)

Query: 26  WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL-LAHGAFIEAKANNGMTPLHLSVWY 84
              +     +++   G T LH AA+       K L    G+  + +  +G TP+ L+   
Sbjct: 172 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 231

Query: 85  SIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
                    V  L++  A   A D    T             + ++  
Sbjct: 232 G----RIEVVMYLIQQGASVEAVDATDHTARQLAQAN-NHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 5  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH- 63
          ++P+ +      +  +   +     + ++      +  T LH  A N   E ++ L+ H 
Sbjct: 1  ESPIKLHTEAAGSYAITEPITRESVNIID----PRHNRTVLHWIASNSSAEKSEDLIVHE 56

Query: 64 -------GAFIEAKANNGMTPLHLSVWY 84
                 GA + A   +  TPL L+V  
Sbjct: 57 AKECIAAGADVNAMDCDENTPLMLAVLA 84

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 44/228 (19%), Positives = 80/228 (35%), Gaps = 37/228 (16%)

Query: 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 221
            ++ G  E K +L++  + +    R   +G     R P  +  +G PG GKT +AR +  
Sbjct: 9   KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA----RIPKGVLLVGPPGVGKTHLARAVAG 64

Query: 222 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQ 278
              +              +D V  FVG    + R   + A+     I+F+DE   +   +
Sbjct: 65  EARV-------PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 117

Query: 279 KADDK---DYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTK 329
            +      D   + L +++  MDG      +VV+ A       R    +    R  R  +
Sbjct: 118 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA-----TNRPDILDPALLRPGRFDR 172

Query: 330 FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 377
               +  + +   +IL I            G  L     +  +A    
Sbjct: 173 QIAIDAPDVKGREQILRIH---------ARGKPLAEDVDLALLAKRTP 211

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.3 bits (142), Expect = 1e-10
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            T LH++  +     +  LL +       L+ QN  G+T LH+AA  G     + L A G
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
           A +      G T LHL+         +     LL+         ++           
Sbjct: 69  AGVLVAERGGHTALHLACRV----RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (135), Expect = 1e-09
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 41 GETPLHMAAKNGCNEAAKLLLAHGA---FIEAKANNGMTPLHLSVWY 84
          G+T LH+A  +        LL   A   +++ + + G T LHL+   
Sbjct: 9  GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL 55

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
               +TPLH++     A +++ LL+       +  A+   G TPL  A        A+LL
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKA----GADPTARMYGGRTPLGSALLRPNPILARLL 244

Query: 61  LAHGA 65
            AHGA
Sbjct: 245 RAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 37  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
           +   G TPLH+A +       +LLL  GA   A+   G TPL      ++   +    + 
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG----SALLRPNPILARL 243

Query: 97  LLEYNADCSAKDNEG 111
           L  + A    +  +G
Sbjct: 244 LRAHGAP---EPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 7e-08
 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 41/174 (23%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLE------WPGNDKVELEAQNMYGETPLHMAA----K 50
            +   T LH++           LL+         +D    ++Q+   +T    AA     
Sbjct: 75  ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

Query: 51  NGCNEAAKLLLAHGAFIEAKANNGMTPLHLS----------------------------- 81
           N  NE           +EA+  +G TPLH++                             
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194

Query: 82  -VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
            +  ++ ++  + ++ LL+  AD +A+   G+TPL   +    +  L  LL  H
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL-GSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 72  NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS---AKDNEGKTPLDH 117
            +G T LHL+V +    +    +  LL ++A       +++ G+T L  
Sbjct: 7   EDGDTALHLAVIH----QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHL 51

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.1 bits (136), Expect = 5e-10
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
            +  Q PLH +A     ++++      G  K  +  Q+  G TPL  A   G  +AA LL
Sbjct: 135 DKFNQIPLHRAASVGSLKLIE---LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 191

Query: 61  L-AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103
           +  +GA  +   N G     +++       +    K  L    D
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVAL-------NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 6  TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
           PLH +   N+   V+ LL    +    L  ++  G  PLH +     +E    LL+   
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSL---LLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 58

Query: 66 FIEAKANNGMTPLHLSVWY 84
           +        +        
Sbjct: 59 NVNLDDYPDDSGWTPFHIA 77

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 14/134 (10%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
                T LH++ G    E+ + L+E   + ++    ++ + + PLH AA  G  +  +LL
Sbjct: 102 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRI----KDKFNQIPLHRAASVGSLKLIELL 157

Query: 61  LAHGAF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHL 118
              G   +  +   G TPL  ++              L+E Y A+    DN+G    D  
Sbjct: 158 CGLGKSAVNWQDKQGWTPLFHALAE----GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 213

Query: 119 SNGPGSAKLRELLL 132
            N     ++++  L
Sbjct: 214 LN----EQVKKFFL 223

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 76  TPLHLSVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDH 117
            PLH +   +    ++  V+ LL    +    KD +G+ PL  
Sbjct: 2   YPLHQACMEN----EFFKVQELLHSKPSLLLQKDQDGRIPLHW 40

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 37/228 (16%)

Query: 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 221
           +++ G  E K ++ +  + +    R + LG K     P  +  +G PGTGKT++A+ +  
Sbjct: 12  ADVAGCDEAKEEVAELVEYLREPSRFQKLGGK----IPKGVLMVGPPGTGKTLLAKAIAG 67

Query: 222 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGG---ILFVDEAYRLIPMQ 278
              +           +  +D V  FVG    + R   ++A+     I+F+DE   +   +
Sbjct: 68  EAKVPFF-------TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120

Query: 279 KAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTK 329
            A      D   + L +++  MDG      ++VI A       R    +    R  R  +
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAA-----TNRPDVLDPALLRPGRFDR 175

Query: 330 FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 377
                  +     +IL + M             L        IA    
Sbjct: 176 QVVVGLPDVRGREQILKVHMRR---------VPLAPDIDAAIIARGTP 214

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 41 GETPLHMAAKNGCNEAAKLLL----AHGAFIEAKANNGMTPLHLSVWY 84
          G+TPLH+A   G   A   L+      G  ++   N   TPLHL+V  
Sbjct: 3  GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 3e-08
 Identities = 33/148 (22%), Positives = 54/148 (36%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
            TPLH++        V  L+        EL+  N   +TPLH+A         +LL+  G
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 65  AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
           A   A   +G T  HL+  +   +   A + +      D  A++ +G T L    N    
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ 123

Query: 125 AKLRELLLWHSEEQRKRRALEACSETKA 152
             ++ LL   ++               A
Sbjct: 124 ETVQLLLERGADIDAVDIKSGRSPLIHA 151

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 4e-08
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
           ++  ++PL  +   N   +V+ LL+   N       Q   G + LH A+  G     + L
Sbjct: 141 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNA----QMYSGSSALHSASGRGLLPLVRTL 196

Query: 61  LAHGAFIEAKANNGMTPLHLSVWY 84
           +  GA    K  +  TPL ++   
Sbjct: 197 VRSGADSSLKNCHNDTPLMVARSR 220

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 7/117 (5%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
                T LHV+      E V+ LLE   +           G +PL  A +N      +LL
Sbjct: 107 NYDGLTALHVAVNTECQETVQLLLERGADIDAV---DIKSGRSPLIHAVENNSLSMVQLL 163

Query: 61  LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
           L HGA + A+  +G + LH +            V+TL+   AD S K+    TPL  
Sbjct: 164 LQHGANVNAQMYSGSSALHSASGRG----LLPLVRTLVRSGADSSLKNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 58
           M    + LH ++G     +V++L+        +   +N + +TPL +A      +  +
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTLVRS----GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 8/49 (16%)

Query: 73  NGMTPLHLSVWYSIRSEDYATVKTLLEY----NADCSAKDNEGKTPLDH 117
           +G TPLH     ++   +   V  L+        +    +N  +TPL  
Sbjct: 2   DGDTPLH----IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 3e-08
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 41 GETPLHMAAKNGCNEAA----KLLLAHGAFIEAKANNGMTPLHLSVWY 84
          G++ LH+A  +          + +    AF+  + N   TPLHL+V  
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 4/65 (6%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
               +T LH++      ++V  LL+   +           G +P  +          + L
Sbjct: 142 PCNGRTALHLAVDLQNPDLVSLLLKCGADV----NRVTYQGYSPYQLTWGRPSTRIQQQL 197

Query: 61  LAHGA 65
                
Sbjct: 198 GQLTL 202

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 37  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
           +   G T LH+A      +   LLL  GA +      G +P  L+             + 
Sbjct: 141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR----PSTRIQQQ 196

Query: 97  LLEYNADCSAKDNEGK 112
           L +   +      E +
Sbjct: 197 LGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 6e-07
 Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 37  QNMYGETPLHMAAKNGCNEAAKLLLAHGAFI-EAKANNGMTPLHLSVWYSIRSEDYATVK 95
            N  G T LH+A+ +G     +LL++ GA +   +  NG T LHL+V      ++   V 
Sbjct: 107 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL----QNPDLVS 162

Query: 96  TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 138
            LL+  AD +    +G +P   L+ G  S ++++ L   + E 
Sbjct: 163 LLLKCGADVNRVTYQGYSPY-QLTWGRPSTRIQQQLGQLTLEN 204

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 1e-06
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 5  QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN 54
           + LH++  + +  +   ++     D   L  QN   +TPLH+A      
Sbjct: 3  DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP 52

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 9/45 (20%), Positives = 23/45 (51%)

Query: 73  NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
           +G + LHL++ +  ++     ++ +    A  + ++N  +TPL  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL 45

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.0 bits (115), Expect = 2e-07
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 25  EWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 84
           E       ++ A +  G+T LH AA     EA  +LL H A  +A+ +   TPL L+   
Sbjct: 107 EDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAARE 166

Query: 85  SIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
                 Y   K LL+  A+    D+  + P D 
Sbjct: 167 ----GSYEASKALLDNFANREITDHMDRLPRDV 195

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 5   QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
           +T LH +A  N  E V  LL    N     +AQ+   ETPL +AA+ G  EA+K LL + 
Sbjct: 124 KTALHWAAAVNNTEAVNILLMHHANR----DAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 65  AFIEAKANNGMTPLHLSVWY 84
           A  E   +    P  ++   
Sbjct: 180 ANREITDHMDRLPRDVASER 199

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 1   MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
               +TPL ++A     E  K+LL+         E  +     P  +A++   ++  +LL
Sbjct: 153 DDKDETPLFLAAREGSYEASKALLDN----FANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 33/131 (25%)

Query: 17  AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 76
           A+++  LL   G +       +  GET LH+AA+    +AAK LL  GA   ++ N G T
Sbjct: 2   AQVISDLLAQ-GAELNA--TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRT 58

Query: 77  PLHLSVWYSIRSEDYA------------------------------TVKTLLEYNADCSA 106
           PLH +V                                         V+ L+  +AD +A
Sbjct: 59  PLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA 118

Query: 107 KDNEGKTPLDH 117
            DN GKT L  
Sbjct: 119 ADNSGKTALHW 129

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 9e-07
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 26  WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
              +    +  +N  G+T   +A   G NE   L+ A+G
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 2e-05
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 84
          +G   L  AA  G  E    LL +   + A+   G T L +    
Sbjct: 1  WG-NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG 44

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 33/215 (15%), Positives = 60/215 (27%), Gaps = 14/215 (6%)

Query: 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 220
           L   +G   LK +LR + +             K       H+   G PG GKT +A ++ 
Sbjct: 8   LDEYIGQERLKQKLRVYLEA-----------AKARKEPLEHLLLFGPPGLGKTTLAHVIA 56

Query: 221 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 280
             L  V +  T      +  DL               I E        +E   L P  + 
Sbjct: 57  HEL-GVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEH--LYPAMED 113

Query: 281 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEE 340
              D  I       ++        +    + P          F       ++  +  ++ 
Sbjct: 114 FVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQG 173

Query: 341 LAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 375
           + +   +     TE++ L   +        A    
Sbjct: 174 VMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLF 208

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 13/161 (8%)

Query: 194 VGARRPPHMAFLGNPGTGKTMVARILGRL---------LYMVGILPTDRVTEVQRTDLVG 244
           +  R   +   +G PG GKT +   L +          L    +L  D    V      G
Sbjct: 38  LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 97

Query: 245 EFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 304
           EF            K+    ILF+DE + ++   KAD     ++A   +   +  G++  
Sbjct: 98  EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALARGELHC 154

Query: 305 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL 345
           + A   +  ++ I  +    RR  K     + + E+   IL
Sbjct: 155 VGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAIL 194

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 45/277 (16%), Positives = 98/277 (35%), Gaps = 30/277 (10%)

Query: 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 221
            ++ G  +   Q+++    + L  R  AL   +G + P  +   G PGTGKT++AR +  
Sbjct: 4   DDVGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60

Query: 222 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQ 278
                  L       +   +++ +  G +    R+  +EA      I+F+DE   + P +
Sbjct: 61  ETGAFFFL-------INGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR 113

Query: 279 KADDKDYGIEALEEIMS----VMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN 334
           +    +     + ++++    +     V+V+ A              G   R       +
Sbjct: 114 EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 173

Query: 335 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVD 394
                E+ +I    M    +  L              +AAL  +   +  R++M+   ++
Sbjct: 174 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 233

Query: 395 PMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431
              ++A             +      +T++D    L 
Sbjct: 234 DETIDA-------------EVMNSLAVTMDDFRWALS 257

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 9e-06
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 26  WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
                + +L  ++  G TPL +A + G  +   +L  H
Sbjct: 118 SFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 7e-05
 Identities = 33/163 (20%), Positives = 51/163 (31%), Gaps = 41/163 (25%)

Query: 4   AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA- 62
           A   L  +A     + V+ LL          +A N +G+T L +        A +LL   
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVH---PDALNRFGKTALQVMMFGSTAIALELLKQG 58

Query: 63  -------------------------------HGAFIEAKANNGMTPLHLSVWYSIRSEDY 91
                                          HGA +      G  P+HL+V     +   
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 92  ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
                     +D   +D  G TPL  L+   G+  L ++L  H
Sbjct: 119 FL-----AAESDLHRRDARGLTPL-ELALQRGAQDLVDILQGH 155

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 10/132 (7%)

Query: 6   TPLHVSAGYNKAEIVKSLLEWPG--NDKVELEAQNMYGETPLHMAAKN---GCNEAAKLL 60
             L  +        +           +K+ L   +   ET LH+A ++           L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 61  LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 120
           + +   ++ +   G T LH              ++      A     +  G+TPL  ++ 
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR----GKASIEIANESGETPL-DIAK 122

Query: 121 GPGSAKLRELLL 132
                   ELL 
Sbjct: 123 RLKHEHCEELLT 134

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 9e-05
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 26  WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
                K  +E  N  GETPL +A +       +LL    +
Sbjct: 99  LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 5   QTPLHVSA---GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
           +T LH++          IV  L++  GN    L+ Q   G T LH        E  KLLL
Sbjct: 46  ETALHLAVRSVDRTSLHIVDFLVQNSGN----LDKQTGKGSTALHYCCLTDNAECLKLLL 101

Query: 62  AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103
              A IE    +G TPL      + R +     + L +  + 
Sbjct: 102 RGKASIEIANESGETPLD----IAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 7/78 (8%)

Query: 36  AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA------NNGMTPLHLSVWYSIRSE 89
           A        L  A K           A G  +  K           T LHL+V    R  
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR-T 59

Query: 90  DYATVKTLLEYNADCSAK 107
               V  L++ + +   +
Sbjct: 60  SLHIVDFLVQNSGNLDKQ 77

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 35/256 (13%), Positives = 64/256 (25%), Gaps = 30/256 (11%)

Query: 192 LKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG 251
           L+      P    LG PGTGKT+  R L  L           +      +          
Sbjct: 36  LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 95

Query: 252 PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD------------G 299
                  +       F+      +  +         +A      ++             G
Sbjct: 96  SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLG 155

Query: 300 GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLY 359
              + +                           F+ +  +++  IL  +           
Sbjct: 156 AFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKA-------- 207

Query: 360 GFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDTDEL 418
              L      + I  +I   T  +   + N G       +AR  +D L  S      +  
Sbjct: 208 --GLAEGSYSEDILQMIADITGAQTPLDTNRG-------DARLAIDILYRSAYAAQQNGR 258

Query: 419 RTITLEDLEAGLKLLL 434
           + I  ED+    K +L
Sbjct: 259 KHIAPEDVRKSSKEVL 274

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGL-KVGARRPPHMAFLGNPGTGKTMVARIL 219
           L  + G     ++L+ W       ++       K G+         G PG GKT  A ++
Sbjct: 13  LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLV 72

Query: 220 GRLLYM 225
            + L  
Sbjct: 73  AQELGY 78

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 5/150 (3%)

Query: 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLGNPGTGKTMVARIL 219
            S  V  H  ++  ++  K     +    L           ++  +G  G+GKT++A+ L
Sbjct: 29  FSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL 88

Query: 220 GRLLY--MVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 277
            + L   +     T         + V   +      +   +++A+ GI+F+DE  ++  +
Sbjct: 89  AKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 148

Query: 278 --QKADDKDYGIEALEEIMSVMDGGKVVVI 305
              ++  +D   E +++ +  +  G +V I
Sbjct: 149 SENRSITRDVSGEGVQQALLKIVEGSLVNI 178

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 51/300 (17%), Positives = 98/300 (32%), Gaps = 28/300 (9%)

Query: 156 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP-HMAFLGNPGTGKT 213
           E+ +EL   I+G  + K  +   A  +    RR  L   +     P ++  +G  G GKT
Sbjct: 7   EIVSELDQHIIGQADAKRAV---AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKT 63

Query: 214 MVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-----PKTRRRIKEAEGGILFV 268
            +AR L +             T+      VG+ V                   + GI+F+
Sbjct: 64  EIARRLAK--LANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFI 121

Query: 269 DEAYRLIPMQKADDKDYGIEA-LEEIMSVMDGGKV-----------VVIFAGYSEPMKRV 316
           DE  ++    +    D   E    +++ +++G  V           ++  A  +  + R 
Sbjct: 122 DEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 181

Query: 317 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED-SLLYGFKLHSSCSMDAIAAL 375
                    R+         ++ +  +IL     + TE    L   +  +          
Sbjct: 182 SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKK 241

Query: 376 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD-ELRTITLEDLEAGLKLLL 434
           I +       +  N G     L    E L  ++SF   D + +   I    +   L  ++
Sbjct: 242 IAEAAFRVNEKTENIGARR--LHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 299

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (93), Expect = 7e-05
 Identities = 7/38 (18%), Positives = 19/38 (50%)

Query: 23  LLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
           ++E       ++  Q+ + +T   ++  NG  + A++L
Sbjct: 115 VVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY 84
            L  AA+ G ++  ++L+A+GA        G +PLHL+  Y
Sbjct: 4  KKLLEAARAGQDDEVRILMANGAPFTTD-WLGTSPLHLAAQY 44

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 33/154 (21%)

Query: 6   TPLHVSAGYNKAEIVKSLLE----------------------------WPGNDKVELEAQ 37
             L  +A   + + V+ L+                                   V  +A+
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 38  NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 97
                TPLHMAA  G     ++LL HGA + AK    MT LH +  +         V+ L
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH----NHQEVVELL 119

Query: 98  LEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
           ++Y AD   +    KT    +S   G+  L E+L
Sbjct: 120 IKYGADVHTQSKFCKTAF-DISIDNGNEDLAEIL 152

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 21/175 (12%), Positives = 47/175 (26%), Gaps = 11/175 (6%)

Query: 139 RKRRALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARR 198
            +R         KA+   +         + +          G L+               
Sbjct: 63  AQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYA 122

Query: 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI 258
              +   G   +GKT +   LG       +   D+   V+  + +  +            
Sbjct: 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIA 177

Query: 259 KEAEG-GILFVDEAYRLIPMQKADDKDYGIE-ALEEIMSVMDG----GKVVVIFA 307
           +      ++ +D    +I     +    GI     +++S +         VVI +
Sbjct: 178 RAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIAS 232

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 1/88 (1%)

Query: 184 DERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 243
           ++ + AL L         +   G+ GTGK+   R L  LL  +  +    V+     +++
Sbjct: 13  EDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP-NVEMI 71

Query: 244 GEFVGHTGPKTRRRIKEAEGGILFVDEA 271
            ++         R+        L V E 
Sbjct: 72  PDWATVLSTNVIRKPTPVVDLPLGVSED 99

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 12/160 (7%)

Query: 196 ARRPPHMAFL-GNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKT 254
            RR  +   L G  G GKT +A  L   +    +        +   D+     G      
Sbjct: 35  CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 94

Query: 255 -RRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF 306
             +R K       +    ILF+DE + +I    A      ++A   I  ++  GK+ VI 
Sbjct: 95  FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLSSGKIRVIG 152

Query: 307 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH 346
           +   +    +   +    RR  K     + + EE  +I++
Sbjct: 153 STTYQEFSNIFEKDRALARRFQKID-ITEPSIEETVQIIN 191

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 19/166 (11%), Positives = 48/166 (28%), Gaps = 5/166 (3%)

Query: 192 LKVGARRPP-HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT 250
            K   R P   +   G P +GKT +A  +               +  +            
Sbjct: 32  TKNSDRTPLVSVLLEGPPHSGKTALAAKIA---EESNFPFIKICSPDKMIGFSETAKCQA 88

Query: 251 GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 310
             K      +++   + VD+  RL+       +   +     ++ +              
Sbjct: 89  MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 148

Query: 311 EPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTED 355
              ++ +          +   H  +  + E+L + L +  N + ++
Sbjct: 149 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKE 194

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 8/118 (6%)

Query: 3   MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
           M       +      + VK  +    +    LE                           
Sbjct: 1   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE-------- 52

Query: 63  HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 120
                 A  N         +  ++     + VK LL   AD + K  +G T L+   N
Sbjct: 53  FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN 110

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.001
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 37  QNMYGETPLHMAAKNGCNEAAKLLLA 62
           ++ +G  P+ +A + G  + A+ L A
Sbjct: 98  RDAWGRLPVDLAEELGHRDVARYLRA 123

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 205 LGNPGTGKTMVARILGRL-----LYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRR-- 256
            G  G GK +VAR++ +L        V +       ++   +L G   G  TG  + +  
Sbjct: 29  TGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEG 88

Query: 257 RIKEAEGGILFVDE 270
             + A+GG LF+DE
Sbjct: 89  FFELADGGTLFLDE 102

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 31/126 (24%)

Query: 43  TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL------------------------ 78
             L  ++  G  +  + ++          + G+T L                        
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 79  -----HLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLD-HLSNGPGSAKLRELL 131
                   +  +    +    K L+E  A   A    + +T  D       G  +  + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 132 LWHSEE 137
               E+
Sbjct: 123 YGVQEK 128

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 40/283 (14%), Positives = 80/283 (28%), Gaps = 66/283 (23%)

Query: 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILG 220
           L   +G   +K +L    +             K+      H+   G PG GKT +A I+ 
Sbjct: 8   LDEFIGQENVKKKLSLALEAA-----------KMRGEVLDHVLLAGPPGLGKTTLAHIIA 56

Query: 221 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 280
                  I  T     V++ D+                    G +LF+DE +RL    + 
Sbjct: 57  S-ELQTNIHVTSGPVLVKQGDMA-----------AILTSLERGDVLFIDEIHRLNKAVEE 104

Query: 281 DDKDYGIEALEEIMSVMDGG---------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 331
                  +   +IM                  ++ A     +      +     R     
Sbjct: 105 LLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLL-----SSPLRSRFGIIL 159

Query: 332 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 391
             + +  +EL +I+    +    +            + + IA             + + G
Sbjct: 160 ELDFYTVKELKEIIKRAASLMDVE--------IEDAAAEMIA-------------KRSRG 198

Query: 392 LVDPMLVNARENLD-LRLSFDCLDTDELRTITLEDLEAGLKLL 433
                    R  +   +   D L   +   I  + +   +++L
Sbjct: 199 -------TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 234

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 29/273 (10%), Positives = 72/273 (26%), Gaps = 47/273 (17%)

Query: 186 RRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLL---------------YMVGILP 230
             + L     +        +G  G GKT +A+   + +                     P
Sbjct: 33  LNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 92

Query: 231 TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--------AEGGILFVDEAYRLI--PMQKA 280
                        G  +   G      +K             ++ +DE   ++  P   A
Sbjct: 93  NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAA 152

Query: 281 DDKDYGIEALEEIMSVMDGGKVVVIFA-GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSE 339
           +D    +   EEI S     ++  +        +  +         ++    H   + S 
Sbjct: 153 EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSR 212

Query: 340 ELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVN 399
           EL  IL  +                +      +  + +    +K               +
Sbjct: 213 ELYTILEQRAELGLR---------DTVWEPRHLELISDVYGEDKGGDG-----------S 252

Query: 400 ARENLDL-RLSFDCLDTDELRTITLEDLEAGLK 431
           AR  +   +++ +  +     +++ + +   + 
Sbjct: 253 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 285

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	438
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	100.0
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	100.0
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	100.0
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.97
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.93
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.9
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.89
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.86
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.85
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.85
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.84
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.84
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.84
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.83
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.83
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.83
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.82
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.82
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.82
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.82
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.81
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.81
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.8
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.8
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.79
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.79
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.79
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.78
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.77
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.77
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.76
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.76
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.76
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.76
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.74
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.74
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.74
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.74
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.73
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.72
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.71
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.71
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.67
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.67
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.64
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.64
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.62
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.62
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.57
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.53
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.52
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.52
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.5
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.45
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.45
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.41
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.26
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.01
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.74
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.61
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.06
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.02
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.01
d1tuea_	205	Replication protein E1 helicase domain {Human papi	98.0
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.96
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.89
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.89
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.87
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.85
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.83
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.79
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.71
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.71
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.68
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.67
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.66
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.58
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.58
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.57
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.57
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.56
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.55
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.53
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.53
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.52
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.51
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.49
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.43
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.42
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.41
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.4
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.37
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.36
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.36
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.34
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.29
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.26
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.26
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.22
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.22
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.15
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.14
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.12
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.11
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.1
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.05
d1okkd2	207	GTPase domain of the signal recognition particle r	97.05
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.99
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.96
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.86
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.84
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	96.84
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.8
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.78
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.76
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.71
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	96.71
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.71
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.71
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.7
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.67
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.61
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	96.58
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	96.53
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.51
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.5
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.44
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.32
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	96.31
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.24
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	96.23
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.23
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	96.03
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	96.01
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.99
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.92
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.88
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.87
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.85
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.73
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.72
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.7
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.66
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.66
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.62
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.58
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.54
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.43
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.4
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	95.39
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	95.38
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.38
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.29
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	95.21
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	95.16
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.05
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.98
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.98
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.9
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.87
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.82
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.8
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.79
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.78
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.73
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	94.72
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	94.71
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.7
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.69
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.68
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.66
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	94.65
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.62
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	94.61
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.49
d1qzma_	94	ATPase domain of protease Lon (La) {Escherichia co	94.47
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.44
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.38
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.35
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	94.34
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.33
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.27
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.25
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.24
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.24
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.23
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.21
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.19
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.18
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.17
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.14
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.13
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.09
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.08
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.07
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.06
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.02
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.01
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	94.01
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.99
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	93.95
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.94
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.87
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.86
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.85
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.75
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.71
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.71
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.7
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.69
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.68
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.61
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.55
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	93.55
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.52
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	93.47
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	93.47
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.45
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.45
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.43
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.43
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	93.38
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.32
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.31
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	93.27
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.25
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.24
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.24
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.23
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.23
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.19
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.18
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.15
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.11
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	93.1
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.05
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	93.02
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.0
d1z63a1	230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	92.93
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.9
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	92.86
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.85
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.8
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	92.77
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.65
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.63
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.59
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	92.55
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.55
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	92.47
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.43
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.29
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.23
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.21
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	92.07
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.05
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	92.04
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.01
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.99
d1z3ix2	298	Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI	91.86
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	91.82
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.63
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.32
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	91.11
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	90.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	90.77
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	90.59
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.35
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.3
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	90.28
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.91
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.89
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	89.5
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.41
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	89.37
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.3
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	89.29
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.25
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.32
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.37
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	87.31
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	87.05
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	86.23
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	85.89
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	85.89
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	85.66
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.14
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.73
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	83.35
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	83.0
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	81.91
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	81.01
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	80.19

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-36  Score=272.69  Aligned_cols=233  Identities=20%  Similarity=0.290  Sum_probs=185.5

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++++|++|++.+..+    ++++.+...+...++++|||||||||||++|+++|++++.       +++.++
T Consensus         9 ~t~~Di~Gl~~~k~~l~e~v~~~----~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~-------~~~~i~   77 (256)
T d1lv7a_           9 TTFADVAGCDEAKEEVAELVEYL----REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFTIS   77 (256)
T ss_dssp             CCGGGSCSCHHHHHHTHHHHHHH----HCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEC
T ss_pred             CCHHHHhchHHHHHHHHHHHHHH----HCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCC-------CEEEEE
Confidence            46999999999999999876543    4455555566678899999999999999999999999976       999999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      ++++.+.|+|+++++++++|+.|+   +|||||||+|.+++.+++..   +....++++.|+..||+    ..++||++|
T Consensus        78 ~~~l~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatT  157 (256)
T d1lv7a_          78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT  157 (256)
T ss_dssp             SCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEE
T ss_pred             hHHhhhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence            999999999999999999999874   48999999999998776442   34566788999999974    457888776


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +.....     ||+++|  ||+.+|+|++|+.++|.+|++.++.+.         .+..+++.+.++..+.         
T Consensus       158 n~~~~l-----d~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~---------~~~~~~~~~~la~~t~---------  214 (256)
T d1lv7a_         158 NRPDVL-----DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAAIIARGTP---------  214 (256)
T ss_dssp             SCTTTS-----CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHHHHHTCT---------
T ss_pred             CCcccC-----CHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCC---------CcCcccCHHHHHHhCC---------
Confidence            644432     899987  999999999999999999999998764         3445556555555444         


Q ss_pred             cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      ..+++++.+++++|...+..         +....|+.+||++|++++.
T Consensus       215 G~s~adi~~l~~~A~~~a~~---------~~~~~i~~~d~~~Al~rv~  253 (256)
T d1lv7a_         215 GFSGADLANLVNEAALFAAR---------GNKRVVSMVEFEKAKDKIM  253 (256)
T ss_dssp             TCCHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHH---------cCCCccCHHHHHHHHHHHh
Confidence            34578899999988766532         2335689999999999875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.1e-36  Score=268.30  Aligned_cols=229  Identities=23%  Similarity=0.319  Sum_probs=181.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++++|++|++++..+..+..+...+    ...++++||+||||||||++|+++|++++.       +++.++
T Consensus         6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g----~~~~~giLl~GppGtGKT~la~aia~~~~~-------~~~~i~   74 (247)
T d1ixza_           6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMG----ARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS   74 (247)
T ss_dssp             CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTT----CCCCSEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred             CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcC----CCCCceEEEecCCCCChhHHHHHHHHHcCC-------CEEEEE
Confidence            479999999999999999877766665555544    456789999999999999999999998876       999999


Q ss_pred             cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~  308 (438)
                      ++++.++|+|++++.++++|+.|+   ++||||||+|.++.+++..   .+....++++.|+..|++    ..++||++|
T Consensus        75 ~~~l~~~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tT  154 (247)
T d1ixza_          75 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT  154 (247)
T ss_dssp             HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred             hHHhhhccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence            999999999999999999999874   4899999999999877543   345567889999999974    467788776


Q ss_pred             CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706          309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR  386 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (438)
                      +....     .||+++|  ||+.+|+|++|+.++|.+|++.++.+..         ...+.+.+.++..+.         
T Consensus       155 n~~~~-----ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~---------~~~~~~~~~la~~t~---------  211 (247)
T d1ixza_         155 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP---------LAEDVDLALLAKRTP---------  211 (247)
T ss_dssp             SCGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHTCT---------
T ss_pred             CCccc-----cCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccC---------CccccCHHHHHHHCC---------
Confidence            65433     2999986  9999999999999999999999997642         334555555554443         


Q ss_pred             cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                      ..+++++.++++.|...++.+         ....|+.+||++|+
T Consensus       212 g~s~~di~~lv~~A~l~a~~~---------~~~~i~~~d~~~A~  246 (247)
T d1ixza_         212 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA  246 (247)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHhh
Confidence            345788999999887665332         23579999999985

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-35  Score=268.14  Aligned_cols=239  Identities=19%  Similarity=0.296  Sum_probs=186.9

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++++|++|++.+..   +..+++.+...+..+|+++|||||||||||++|+++|++++.       +++.+++
T Consensus         2 ~~~dv~G~~~~k~~l~~~i~~---~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~-------~~~~i~~   71 (258)
T d1e32a2           2 GYDDVGGCRKQLAQIKEMVEL---PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLING   71 (258)
T ss_dssp             CGGGCCSCSHHHHHHHHHHHH---HHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-------EEEEECH
T ss_pred             ChhhhccHHHHHHHHHHHHHH---HhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCC-------eEEEEEc
Confidence            489999999999999998543   334444444455567889999999999999999999999876       8999999


Q ss_pred             ccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCChh
Q 013706          240 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEP  312 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~~  312 (438)
                      +++.+.++|+++..++.+|+.|   .++||||||+|.+.+++.+..++....+++.++..++.    ..++||++|+...
T Consensus        72 ~~l~~~~~g~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~  151 (258)
T d1e32a2          72 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN  151 (258)
T ss_dssp             HHHTTSCTTHHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGG
T ss_pred             hhhcccccccHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCcc
Confidence            9999999999999999999887   46999999999999988766666777788888777654    5678888876554


Q ss_pred             HHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706          313 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG  390 (438)
Q Consensus       313 ~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  390 (438)
                      ..     ||+++|  ||+.+|+|+.|+.++|.+|++.++++.         .+..+++.+.++..+.+         .++
T Consensus       152 ~l-----d~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~---------~~~~~~~~~~la~~t~G---------~s~  208 (258)
T d1e32a2         152 SI-----DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLADDVDLEQVANETHG---------HVG  208 (258)
T ss_dssp             GS-----CGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTS---------CBCTTCCHHHHHHHCTT---------CCH
T ss_pred             cc-----chhhhhcccccceeECCCCCHHHHHHHhhhhccCc---------ccccccchhhhhhcccC---------CCH
Confidence            43     999998  999999999999999999999998764         33455555555555554         457


Q ss_pred             cchHHHHHHHHHHhhccc----c--CCCCCh--hhhhhccHHHHHHHHH
Q 013706          391 GLVDPMLVNARENLDLRL----S--FDCLDT--DELRTITLEDLEAGLK  431 (438)
Q Consensus       391 ~~l~~~~~~a~~~~~~r~----~--~~~~~~--~~~~~i~~~d~~~a~~  431 (438)
                      +++.++++.|...+..|-    .  .+..+.  .+...|+++||..|++
T Consensus       209 adl~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~  257 (258)
T d1e32a2         209 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS  257 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCSSCCBHHHHHHCCBCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhccCccCHHHHHHHhC
Confidence            888888888877765542    1  111111  2234699999999986

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.3e-32  Score=248.85  Aligned_cols=240  Identities=16%  Similarity=0.250  Sum_probs=173.2

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|+++++++|.+.+.   ++..+++.+...+...++++|||||||||||++|+++|++++.       +++.+++
T Consensus         5 ~f~di~G~~~~k~~l~~~i~---~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~-------~~~~~~~   74 (265)
T d1r7ra3           5 TWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG   74 (265)
T ss_dssp             SCSSCSSSSCCCCHHHHHTH---HHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTC-------EEEEECH
T ss_pred             CHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCC-------cEEEEEH
Confidence            68999999999999998754   3333333333345567889999999999999999999999876       8999999


Q ss_pred             ccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEecC
Q 013706          240 TDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAGY  309 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~~  309 (438)
                      +++.+.+.|+++..++.+|..|   .+|||||||+|.+..++...   ......++++.|+..|++    ..++||++|+
T Consensus        75 ~~l~~~~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn  154 (265)
T d1r7ra3          75 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN  154 (265)
T ss_dssp             HHHHTSCTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCB
T ss_pred             HHhhhccccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC
Confidence            9999999999999999999876   46999999999999876422   233456788999999974    4578888765


Q ss_pred             ChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcc
Q 013706          310 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE  387 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (438)
                      ....  +   ||+++|  ||+.+|+|+.|+.++|.+|++.++++..         ...+++.+.++..+.+         
T Consensus       155 ~~~~--l---d~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~---------~~~~~~l~~la~~t~g---------  211 (265)
T d1r7ra3         155 RPDI--I---DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTNG---------  211 (265)
T ss_dssp             SCTT--T---SCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-------------CCCCHHHHHHHCS---------
T ss_pred             Cchh--C---CHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCC---------chhhhhHHHHHhcCCC---------
Confidence            4443  2   999986  9999999999999999999999887642         2344555566665554         


Q ss_pred             ccccchHHHHHHHHHHhhccccCCCCCh-------hhhhhccHHHHHHHHHH
Q 013706          388 MNGGLVDPMLVNARENLDLRLSFDCLDT-------DELRTITLEDLEAGLKL  432 (438)
Q Consensus       388 ~n~~~l~~~~~~a~~~~~~r~~~~~~~~-------~~~~~i~~~d~~~a~~~  432 (438)
                      .+++++.+++++|...+..+.......+       ....+++.+|+..+++.
T Consensus       212 ~s~~di~~lv~~A~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~i~~  263 (265)
T d1r7ra3         212 FSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRR  263 (265)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHC------------------------CHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccchHHHcc
Confidence            4578889999988887765543222111       12234677777777653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=1.2e-25  Score=207.54  Aligned_cols=259  Identities=17%  Similarity=0.238  Sum_probs=167.7

Q ss_pred             HHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhcCCCC-CCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706          155 DELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKV-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD  232 (438)
Q Consensus       155 ~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~  232 (438)
                      .+....+++ ++||+.+++.+...+.   .+.++....... ...++.++||+||||||||++|+++|+.++.       
T Consensus         6 ~~i~~~L~~~ViGQd~A~~~l~~av~---~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~-------   75 (309)
T d1ofha_           6 REIVSELDQHIIGQADAKRAVAIALR---NRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------   75 (309)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHHH---HHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHhcCcccChHHHHHHHHHHHH---HHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcccc-------
Confidence            445566766 7899999999987542   111221111111 1126789999999999999999999999875       


Q ss_pred             CEEEeeccccc--ccccccchHHHHHHHHHcc--------CcEEEEeCcccccCCCCCCCchhH-HHHHHHHHhhccCC-
Q 013706          233 RVTEVQRTDLV--GEFVGHTGPKTRRRIKEAE--------GGILFVDEAYRLIPMQKADDKDYG-IEALEEIMSVMDGG-  300 (438)
Q Consensus       233 ~~~~~~~~~~~--~~~~g~~~~~~~~~~~~a~--------~~il~iDEid~l~~~~~~~~~~~~-~~~~~~ll~~~~~~-  300 (438)
                      +++.++.+++.  +.|.|++++.++.+|..|.        +|||||||||++++++++...+.. ..+++.||..+|+. 
T Consensus        76 ~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~  155 (309)
T d1ofha_          76 PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGST  155 (309)
T ss_dssp             CEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCE
T ss_pred             chhcccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCE
Confidence            89999999987  5589999999999998874        499999999999998876655544 45789999999863 


Q ss_pred             -----------CEEEEEecC--ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccc----ccccccc
Q 013706          301 -----------KVVVIFAGY--SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDS----LLYGFKL  363 (438)
Q Consensus       301 -----------~v~vi~~~~--~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~----~~~~~~~  363 (438)
                                 ++.+|+++.  .+....   .+|++++||+.++.|++|+.+++.+|++.+........    ...+.  
T Consensus       156 ~~~~~~~i~~s~ilfi~~ga~~~~~~~~---~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~~~~l~~~~~~~~~~~~~--  230 (309)
T d1ofha_         156 VSTKHGMVKTDHILFIASGAFQVARPSD---LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGV--  230 (309)
T ss_dssp             EEETTEEEECTTCEEEEEECCSSSCGGG---SCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTC--
T ss_pred             EecCCeEEEccceeEEeccchhhcCccc---chhhhhhhhheeeeccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC--
Confidence                       245555432  111112   28999999999999999999999999865432211100    00112  


Q ss_pred             cccccHHHHHHHHHHHhhHhh-hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706          364 HSSCSMDAIAALIEKETTEKQ-RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK  431 (438)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~-~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~  431 (438)
                      ....+..+............. .....+|.++.++++..+.........   ......++.+.+.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~GaR~L~~~ie~i~~~~~~~~~~~---~~~~v~i~~~~v~~~l~  296 (309)
T d1ofha_         231 NIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM---NGQTVNIDAAYVADALG  296 (309)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGC---TTCEEEECHHHHHHHTC
T ss_pred             ccccchHHHHHHHHHHHHHhhcchhcCchHHHHHHHHHHHHHHcccccc---CCCEEEECHHHHHHhcC
Confidence            223344444444333221111 112346788888887665543332211   11223456666665553

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.3e-24  Score=193.97  Aligned_cols=208  Identities=17%  Similarity=0.222  Sum_probs=154.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++++..++....   .+        ...++++|||||||||||++|+++|++++.       ++..++
T Consensus         6 ~~~~divGqe~~~~~l~~~i~~~~---~~--------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~-------~~~~~~   67 (238)
T d1in4a2           6 KSLDEFIGQENVKKKLSLALEAAK---MR--------GEVLDHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTS   67 (238)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHHHH---HH--------TCCCCCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEE
T ss_pred             CcHHHcCChHHHHHHHHHHHHHHH---hc--------CCCCCeEEEECCCCCcHHHHHHHHHhccCC-------Cccccc
Confidence            368999999999999998865432   11        235679999999999999999999999976       677777


Q ss_pred             cccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------------------
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------  299 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------------  299 (438)
                      +++...      ...+...+... +++++||||+|.+.+..+           +.++..++.                  
T Consensus        68 ~~~~~~------~~~~~~~~~~~~~~~~~~ide~~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~  130 (238)
T d1in4a2          68 GPVLVK------QGDMAAILTSLERGDVLFIDEIHRLNKAVE-----------ELLYSAIEDFQIDIMIGKGPSAKSIRI  130 (238)
T ss_dssp             TTTCCS------HHHHHHHHHHCCTTCEEEEETGGGCCHHHH-----------HHHHHHHHTSCCCC-------------
T ss_pred             Cccccc------HHHHHHHHHhhccCCchHHHHHHHhhhHHH-----------hhcccceeeeeeeeeecCccccccccc
Confidence            665432      23445555554 569999999999976433           334433332                  


Q ss_pred             --CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH
Q 013706          300 --GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  377 (438)
Q Consensus       300 --~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (438)
                        ..+++|++++.....     ++++++||...+.|+.|+.+++..+++.......           ..++++++..++.
T Consensus       131 ~~~~~~~I~at~~~~~~-----~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~l~~i~~  194 (238)
T d1in4a2         131 DIQPFTLVGATTRSGLL-----SSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-----------VEIEDAAAEMIAK  194 (238)
T ss_dssp             --CCCEEEEEESCGGGS-----CHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHHHHH
T ss_pred             CCCCeEEEEecCCCccc-----cccceeeeeEEEEecCCCHHHHHHHHHHhhhhcc-----------chhhHHHHHHHHH
Confidence              256788887776654     8889999999999999999999999998887653           3456677777776


Q ss_pred             HHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          378 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       378 ~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      ..       .|+.|.+.++++.+...+..+         ....||.+++.++++.+
T Consensus       195 ~s-------~gd~R~ai~~l~~~~~~~~~~---------~~~~it~~~~~~al~~l  234 (238)
T d1in4a2         195 RS-------RGTPRIAIRLTKRVRDMLTVV---------KADRINTDIVLKTMEVL  234 (238)
T ss_dssp             TS-------TTCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHH
T ss_pred             hC-------CCCHHHHHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHhh
Confidence            54       577888888888876554222         22458899999998865

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.2e-24  Score=170.27  Aligned_cols=107  Identities=28%  Similarity=0.320  Sum_probs=102.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhc
Q 013706            5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY   84 (438)
Q Consensus         5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   84 (438)
                      .|||++||..|+.++|++|++    .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+  
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~----~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~--   76 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA----KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV--   76 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT----TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHH--
T ss_pred             ChHHHHHHHCCCHHHHHHHHH----hhhccccccccccccccccccccccccccccccccceeeecccccccchhhhh--
Confidence            489999999999999999999    78999999999999999999999999999999999999999999999999999  


Q ss_pred             ccccCcHHHHHHHHhCCCCCcccCCCCCcccccccc
Q 013706           85 SIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN  120 (438)
Q Consensus        85 ~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~  120 (438)
                        ..|+.+++++|+++|++++.+|.+|.||+ +++.
T Consensus        77 --~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l-~~a~  109 (118)
T d1myoa_          77 --YEGHVSCVKLLLSKGADKTVKGPDGLTAL-EATD  109 (118)
T ss_dssp             --TTTCCHHHHHHHTTCCCSSSSSSSTCCCC-CTCS
T ss_pred             --hcCchhhhhhhhcccccceeeCCCCCCHH-HHHh
Confidence              88999999999999999999999999999 4443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=2.3e-23  Score=185.27  Aligned_cols=136  Identities=15%  Similarity=0.192  Sum_probs=102.9

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccc-hHHHHHHHHHcc---CcEEEEeCcc
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT-GPKTRRRIKEAE---GGILFVDEAY  272 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~a~---~~il~iDEid  272 (438)
                      .++.++|||||||||||++|+++|++++.       +++.+++++....+.+.. .+.++++|+.|.   ++||||||||
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~~~~~-------~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid  110 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAEESNF-------PFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIE  110 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTC-------SEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhhcccc-------cccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhh
Confidence            35678999999999999999999999876       999999888766666654 356888998874   4899999999


Q ss_pred             cccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCChhHHHHhhhC-cCccCCCCcceeCCCCC-HHHHHHHH
Q 013706          273 RLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASN-EGFCRRVTKFFHFNDFN-SEELAKIL  345 (438)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~~~~~~~~~~~-p~l~~R~~~~i~~~~~~-~~e~~~il  345 (438)
                      .+.+.+..++ .....++++|+..+++     .+|+||+||+.....     + +.+++||+.+|++|.+. .+++.+++
T Consensus       111 ~l~~~~~~~~-~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~l-----d~~~~~~rF~~~i~~P~~~~r~~il~~l  184 (246)
T d1d2na_         111 RLLDYVPIGP-RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL-----QEMEMLNAFSTTIHVPNIATGEQLLEAL  184 (246)
T ss_dssp             HHTTCBTTTT-BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH-----HHTTCTTTSSEEEECCCEEEHHHHHHHH
T ss_pred             hHhhhccccc-chhHHHHHHHHHHhcCCCccccceeeeeccCChhhc-----cchhhcCccceEEecCCchhHHHHHHHH
Confidence            9988765433 2345777889988876     247777777654332     4 45788999999997765 34444444

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.89  E-value=4.7e-26  Score=207.31  Aligned_cols=152  Identities=14%  Similarity=0.074  Sum_probs=117.0

Q ss_pred             CCCCCCCceE-EecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc-CcEEEEeCc
Q 013706          194 VGARRPPHMA-FLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEA  271 (438)
Q Consensus       194 ~~~~~~~~~l-l~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~il~iDEi  271 (438)
                      ++...+++++ ||||||||||++|+++|.+++.     ..+|+.+++++++++|+|+.++.++.+|++|+ ++|||||||
T Consensus       117 ~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~-----~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DEi  191 (321)
T d1w44a_         117 GGHRYASGMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSL  191 (321)
T ss_dssp             TTEEEESEEEEEECSSSSCHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECC
T ss_pred             hhcccCCceEEEECCCCccHHHHHHHHHHHhcC-----CCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeehh
Confidence            3445667765 5899999999999999999873     22788999999999999999999999999884 699999999


Q ss_pred             ccccCCCCCCC-chhHHHHHHHHHhhccC----CCEEEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHH
Q 013706          272 YRLIPMQKADD-KDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKI  344 (438)
Q Consensus       272 d~l~~~~~~~~-~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~i  344 (438)
                      |.+.+.++++. +....+++++||..||+    ..++||+|||+..++..+  ++++.+  ||+..+.++.|+.+++.+|
T Consensus       192 d~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i--~~~~~r~~Rf~~~v~v~~pd~~~r~~i  269 (321)
T d1w44a_         192 KNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKI--VELVKEASRSNSTSLVISTDVDGEWQV  269 (321)
T ss_dssp             TTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHH--HHHHHHHHHHSCSEEEEECSSTTEEEE
T ss_pred             hhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCCcccccch--hhhhhccCcccceeecCCCChHHHHHH
Confidence            99999887543 33445899999999985    568999998875443222  444444  9999999999999999999


Q ss_pred             HHHHHhcc
Q 013706          345 LHIKMNNQ  352 (438)
Q Consensus       345 l~~~l~~~  352 (438)
                      ++.+....
T Consensus       270 l~~~~~~~  277 (321)
T d1w44a_         270 LTRTGEGL  277 (321)
T ss_dssp             EEECBTTC
T ss_pred             HHHhccCc
Confidence            97665543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=1.3e-22  Score=180.96  Aligned_cols=208  Identities=20%  Similarity=0.249  Sum_probs=147.6

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|+++++++++.++....           .....++++|||||||||||++|+++|++++.       ++..++
T Consensus         6 ~~~ddivGq~~~~~~L~~~i~~~~-----------~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~-------~~~~~~   67 (239)
T d1ixsb2           6 KTLDEYIGQERLKQKLRVYLEAAK-----------ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTS   67 (239)
T ss_dssp             CSGGGSCSCHHHHHHHHHHHHHHT-----------TSSSCCCCEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEE
T ss_pred             CCHHHhCCHHHHHHHHHHHHHHHH-----------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CeEecc
Confidence            368999999999999998865432           11236789999999999999999999999876       777777


Q ss_pred             cccccccccccchHHHHHHHHHc--cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc------------------
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD------------------  298 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~------------------  298 (438)
                      .+.....  +    .....+...  .++|+||||+|.+.+..+           ..++..|+                  
T Consensus        68 ~~~~~~~--~----~~~~~~~~~~~~~~i~~iDe~~~~~~~~~-----------~~l~~~~e~~~~~~~~~~~~~~~~~~  130 (239)
T d1ixsb2          68 GPAIEKP--G----DLAAILANSLEEGDILFIDEIHRLSRQAE-----------EHLYPAMEDFVMDIVIGQGPAARTIR  130 (239)
T ss_dssp             TTTCCSH--H----HHHHHHHTTCCTTCEEEEETGGGCCHHHH-----------HHHHHHHHHSEEEEECSCTTCCCEEE
T ss_pred             CCccccc--h----hhHHHHHhhccCCCeeeeecccccchhHH-----------Hhhhhhhhhhhhhhhhccchhhhhcc
Confidence            6654321  1    122222222  357999999999976433           33443332                  


Q ss_pred             --CCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHH
Q 013706          299 --GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI  376 (438)
Q Consensus       299 --~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (438)
                        ...+++|+++++....     .++.++|+...+.|..|+.+++..++...+..+.           ..++.+.+..++
T Consensus       131 ~~~~~~~~i~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------i~~~~~~l~~ia  194 (239)
T d1ixsb2         131 LELPRFTLIGATTRPGLI-----TAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-----------VRITEEAALEIG  194 (239)
T ss_dssp             EECCCCEEEEEESCCSSC-----SCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGC-----------CCBCHHHHHHHH
T ss_pred             cCCCCEEEEeeccCcccc-----cchhhcccceeeEeeccChhhhhHHHHHHHHHhC-----------CccchHHHHHHH
Confidence              1345666665544433     5667778889999999999999999998887653           345667777777


Q ss_pred             HHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706          377 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL  433 (438)
Q Consensus       377 ~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~  433 (438)
                      ...       .|+.|.+.++++.+...+.         ..+...||.+++.+++..+
T Consensus       195 ~~s-------~gd~R~a~~~l~~~~~~a~---------~~~~~~It~~~~~~~l~~l  235 (239)
T d1ixsb2         195 RRS-------RGTMRVAKRLFRRVRDFAQ---------VAGEEVITRERALEALAAL  235 (239)
T ss_dssp             HHT-------TSSHHHHHHHHHHHHHHHT---------TSCCSCBCHHHHHHHHHHH
T ss_pred             HHc-------CCCHHHHHHHHHHHHHHHH---------HhCCCCcCHHHHHHHHhhh
Confidence            765       5677888898888766541         1223568899999888654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.2e-23  Score=164.77  Aligned_cols=121  Identities=24%  Similarity=0.254  Sum_probs=110.0

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706            6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS   85 (438)
Q Consensus         6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   85 (438)
                      ++||.||..|+.++|++|++    .|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+   
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~----~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~---   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA---   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH---
T ss_pred             HHHHHHHHcCCHHHHHHHHH----cCCCccccccccccccccccccccccccccccccccccccccccCcccccccc---
Confidence            68999999999999999999    78999999999999999999999999999999999999999999999999999   


Q ss_pred             cccCcHHHHHHHHhCCCCCcccCC-CCCcccccc-ccCCCchhHHHHHHhc
Q 013706           86 IRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHL-SNGPGSAKLRELLLWH  134 (438)
Q Consensus        86 ~~~~~~~~~~~Ll~~ga~~~~~d~-~g~t~l~~~-a~~~~~~~~~~lL~~~  134 (438)
                       ..|+.+++++|+++|++++..+. .+.||++.+ +...++.+++++|...
T Consensus        76 -~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          76 -SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             -HTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             -hhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence             88999999999999999998765 588886433 4556778999999753

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-23  Score=167.74  Aligned_cols=122  Identities=26%  Similarity=0.342  Sum_probs=112.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCC-cHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGM-TPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A   81 (438)
                      -+.++||+||.+|+.++|++|++    .|+++|.+|..|+||||+|+ .|+.+++++|+++|++++.++..+. ||||+|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~----~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHH----cCCccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            36789999999999999999999    78999999999999999775 7999999999999999999998876 699999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                      +    ..|+.+++++|+++|++++.+|..|+||+ +.|+..++.+++++|+..
T Consensus        77 ~----~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l-~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          77 A----REGFLDTLVVLHRAGARLDVRDAWGRLPV-DLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             H----HHTCHHHHHHHHHHTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHSSC
T ss_pred             c----ccccccccccccccccccccccCCCCCHH-HHHHHcCCHHHHHHHHhc
Confidence            9    88999999999999999999999999999 666678899999998753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=8e-21  Score=168.73  Aligned_cols=240  Identities=17%  Similarity=0.220  Sum_probs=170.9

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEEE
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE  236 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~~  236 (438)
                      .++-++|.+....++.+++.                .....|+||.||||+|||++++.+|+.+....   ......++.
T Consensus        16 ~ld~~igRd~Ei~~l~~iL~----------------r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~   79 (268)
T d1r6bx2          16 GIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS   79 (268)
T ss_dssp             CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred             CCCcccChHHHHHHHHHHHh----------------cCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEE
Confidence            46778999987777776632                34567999999999999999999999886532   244567899


Q ss_pred             eecccccc--cccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706          237 VQRTDLVG--EFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE  311 (438)
Q Consensus       237 ~~~~~~~~--~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~  311 (438)
                      ++.+.++.  +|.|+-+..+..+++++   .+.||||||+|.+....+++++  +..+-+.|.+.+..+.+.+|++||++
T Consensus        80 l~~~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~--~~d~a~~Lkp~L~rg~i~vIgatT~e  157 (268)
T d1r6bx2          80 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVDAANLIKPLLSSGKIRVIGSTTYQ  157 (268)
T ss_dssp             CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred             eeechHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCc--cccHHHHhhHHHhCCCCeEEEeCCHH
Confidence            99998875  68999999999998875   3479999999999876543322  34566888889999999999999999


Q ss_pred             hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH---HHhhHhhhccc
Q 013706          312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE---KETTEKQRREM  388 (438)
Q Consensus       312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  388 (438)
                      .+...+..||+|.+|| .+|.+++|+.++-.+|+.........       .-...++++++.....   .|.. +...|+
T Consensus       158 ey~~~~e~d~al~rrF-~~I~V~Eps~e~t~~IL~~~~~~~e~-------~h~v~~~~~al~~~v~ls~ryi~-~~~~Pd  228 (268)
T d1r6bx2         158 EFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAVKYIN-DRHLPD  228 (268)
T ss_dssp             HHHCCCCCTTSSGGGE-EEEECCCCCHHHHHHHHHHHHHHHHH-------HHTCCCCHHHHHHHHHHHHHHCT-TSCTTH
T ss_pred             HHHHHHhhcHHHHhhh-cccccCCCCHHHHHHHHHHhhHHHhc-------cCCEEeChHHHHHHHHHHHhhcc-CCCCCc
Confidence            9999999999999999 99999999999999999876654321       1123345566655544   3321 112222


Q ss_pred             cccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          389 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       389 n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                         -...+++.|...+.  +...   ......++.+|++..+.++.
T Consensus       229 ---KAIdllDea~a~~~--~~~~---~~~~~~i~~~di~~~i~~~~  266 (268)
T d1r6bx2         229 ---KAIDVIDEAGARAR--LMPV---SKRKKTVNVADIESVVARIA  266 (268)
T ss_dssp             ---HHHHHHHHHHHHHH--HSSS---CCCCCSCCHHHHHHHHHHHS
T ss_pred             ---HHHHHHHHHHHHHH--hhcc---ccCcccCCHHHHHHHHHHHh
Confidence               23456666654432  2110   11234578899988777653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.3e-21  Score=174.24  Aligned_cols=135  Identities=30%  Similarity=0.363  Sum_probs=97.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcc---cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE---LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      .+|.||||+||.+|+.+++++|++    .+++   ++.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.|||
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~----~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLG----FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHH----cCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            478999999999999999999988    4444   777888899999999999999999999999988887776555555


Q ss_pred             HHHhhcc-------------------------------------------------------------------------
Q 013706           79 HLSVWYS-------------------------------------------------------------------------   85 (438)
Q Consensus        79 ~~A~~~~-------------------------------------------------------------------------   85 (438)
                      |+|+...                                                                         
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            5544110                                                                         


Q ss_pred             ---cccCcHHHHHHHHhCCCCCcc-cCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           86 ---IRSEDYATVKTLLEYNADCSA-KDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        86 ---~~~~~~~~~~~Ll~~ga~~~~-~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                         ...++.+++++|++.+++++. .+..|.||| |.|+..++.+++++|+..+++...+
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL-~~A~~~~~~~~v~~Ll~~gadin~~  221 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL-HLAVEAQAASVLELLLKAGADPTAR  221 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cccccccccccccchhcccccccccccccccccc-cccccccHHHHHHHHHHCCCCCCCC
Confidence               145666777777777777664 355677887 4444566777777777776655433

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.2e-20  Score=166.00  Aligned_cols=203  Identities=17%  Similarity=0.191  Sum_probs=144.4

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------  232 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------  232 (438)
                      ..|++++|++.+++.+..++..               ...|..+||+||||||||++|+++++.+.........      
T Consensus         9 ~~~~dlig~~~~~~~L~~~i~~---------------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~   73 (239)
T d1njfa_           9 QTFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD   73 (239)
T ss_dssp             SSGGGSCSCHHHHHHHHHHHHT---------------TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred             CCHHHccChHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccch
Confidence            3689999999999999887541               1234559999999999999999999998643322211      


Q ss_pred             -----------CEEEeecccccccccccchHHHHHHHHHcc-------CcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706          233 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-------GGILFVDEAYRLIPMQKADDKDYGIEALEEIM  294 (438)
Q Consensus       233 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-------~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll  294 (438)
                                 .+++++.++..      ....++.+++...       ..|+||||+|.|..           ...+.|+
T Consensus        74 ~~~~i~~~~~~~~~~~~~~~~~------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~-----------~~q~~Ll  136 (239)
T d1njfa_          74 NCREIEQGRFVDLIEIDAASRT------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALL  136 (239)
T ss_dssp             HHHHHHHTCCTTEEEEETTCSS------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHH
T ss_pred             HHHHHHcCCCCeEEEecchhcC------CHHHHHHHHHHHHhccccCCCEEEEEECcccCCH-----------HHHHHHH
Confidence                       13333332211      1234556666542       25999999999975           3448899


Q ss_pred             hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706          295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI  372 (438)
Q Consensus       295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  372 (438)
                      ..|++  ....+|++++....  +   .|++++|+ ..+.|++|+.+++.+++...+..+.           ..++++++
T Consensus       137 k~lE~~~~~~~~il~tn~~~~--i---~~~i~SRc-~~i~~~~~~~~~i~~~l~~i~~~e~-----------~~~~~~~l  199 (239)
T d1njfa_         137 KTLEEPPEHVKFLLATTDPQK--L---PVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRAL  199 (239)
T ss_dssp             HHHHSCCTTEEEEEEESCGGG--S---CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHH
T ss_pred             HHHhcCCCCeEEEEEcCCccc--c---ChhHhhhh-cccccccCcHHHhhhHHHHHHhhhc-----------cCCCHHHH
Confidence            99986  45666666554332  2   78899999 8999999999999999998887653           34677888


Q ss_pred             HHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          373 AALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                      ..++...       .|+.|.+.++++.+....             ...|+.+|+.+.+
T Consensus       200 ~~i~~~s-------~Gd~R~ain~l~~~~~~~-------------~~~I~~~~v~~~l  237 (239)
T d1njfa_         200 QLLARAA-------EGSLRDALSLTDQAIASG-------------DGQVSTQAVSAML  237 (239)
T ss_dssp             HHHHHHT-------TTCHHHHHHHHHHHHHHT-------------TTSBCHHHHHHHH
T ss_pred             HHHHHHc-------CCCHHHHHHHHHHHHHhC-------------CCCcCHHHHHHHh
Confidence            8777654       578888888888776442             2457888887765

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.2e-21  Score=173.22  Aligned_cols=208  Identities=20%  Similarity=0.232  Sum_probs=140.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.|+.++..                ...+++||+||||||||++|+++|++++....  ...+++.+
T Consensus        11 ~~~~divg~~~~~~~L~~~i~~----------------~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~--~~~~~e~~   72 (227)
T d1sxjc2          11 ETLDEVYGQNEVITTVRKFVDE----------------GKLPHLLFYGPPGTGKTSTIVALAREIYGKNY--SNMVLELN   72 (227)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHT----------------TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH--HHHEEEEC
T ss_pred             CCHHHccCcHHHHHHHHHHHHc----------------CCCCeEEEECCCCCChhHHHHHHHHHhhcCCC--cceeEEec
Confidence            3689999999999999988541                24568999999999999999999999863211  11345566


Q ss_pred             cccccccccccchHHHHHHHHHc-----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCCh
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSE  311 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a-----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~  311 (438)
                      .++..+.......  ........     ...|+||||+|.+....           .+.|+..|+.  ...+++++++..
T Consensus        73 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~-----------~~~Ll~~le~~~~~~~~~~~~~~~  139 (227)
T d1sxjc2          73 ASDDRGIDVVRNQ--IKDFASTRQIFSKGFKLIILDEADAMTNAA-----------QNALRRVIERYTKNTRFCVLANYA  139 (227)
T ss_dssp             TTSCCSHHHHHTH--HHHHHHBCCSSSCSCEEEEETTGGGSCHHH-----------HHHHHHHHHHTTTTEEEEEEESCG
T ss_pred             ccccCCeeeeecc--hhhccccccccCCCeEEEEEeccccchhhH-----------HHHHHHHhhhcccceeeccccCcH
Confidence            5554332211111  11111111     12599999999997643           3777777764  345555554432


Q ss_pred             hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccccc
Q 013706          312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG  391 (438)
Q Consensus       312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~  391 (438)
                      ..     ..|++++|+ ..+.|++|+.+++..++.+.+.++.           ..++++++..+++..       .|+.|
T Consensus       140 ~~-----i~~~i~sr~-~~i~~~~~~~~~i~~~l~~I~~~e~-----------i~i~~~~l~~i~~~s-------~Gd~R  195 (227)
T d1sxjc2         140 HK-----LTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEK-----------LKLSPNAEKALIELS-------NGDMR  195 (227)
T ss_dssp             GG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCBCHHHHHHHHHHH-------TTCHH
T ss_pred             HH-----hHHHHHHHH-hhhcccccccccccccccccccccc-----------ccCCHHHHHHHHHHc-------CCcHH
Confidence            22     278889998 8899999999999999999988753           346778888888875       46677


Q ss_pred             chHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          392 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       392 ~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                      .+.+.+|.+...+         .......||.+++.+++
T Consensus       196 ~ain~Lq~~~~~~---------~~~~~~~It~~~v~e~~  225 (227)
T d1sxjc2         196 RVLNVLQSCKATL---------DNPDEDEISDDVIYECC  225 (227)
T ss_dssp             HHHHHTTTTTTTT---------CSSSCCCBCHHHHHHHT
T ss_pred             HHHHHHHHHHHhc---------CCCCCCeeCHHHHHHHh
Confidence            7777666443221         22344678999988875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.9e-21  Score=168.25  Aligned_cols=122  Identities=31%  Similarity=0.399  Sum_probs=96.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+.+|+.+++++|++    .|++++..|..|.||||+|+..++.+++++|++.+.+++.+|..|+||||+|
T Consensus       101 ~~g~tpL~~A~~~~~~e~~~~Ll~----~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~A  176 (223)
T d1uoha_         101 QNGCTPLHYAASKNRHEIAVMLLE----GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA  176 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             CCCCchhhHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccc
Confidence            357888888888888888888887    5777888888888888888888888888888888888888888888888888


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW  133 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~  133 (438)
                      +    ..|+.+++++|+++|++++..|.+|+||| ++|. .++.+++++|+.
T Consensus       177 a----~~g~~~~v~~LL~~Gad~~~~d~~g~tpl-~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         177 C----DEERVEEAKLLVSQGASIYIENKEEKTPL-QVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             H----HTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHCC-TTHHHHHHHHHC
T ss_pred             c----ccCcHHHHHHHHHCCCCCCCCCCCCCCHH-HHHH-CCCHHHHhcccC
Confidence            8    67788888888888888888888888888 4454 466667776653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6.8e-21  Score=167.82  Aligned_cols=135  Identities=31%  Similarity=0.385  Sum_probs=115.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCC-----------------------------CCcccccccCCCChHHHHHHHcC
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGN-----------------------------DKVELEAQNMYGETPLHMAAKNG   52 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~-----------------------------~~~~~~~~d~~g~t~L~~A~~~g   52 (438)
                      ..|+||||+||..|+.+++++|++....                             .+++++..|..|+||||+|+..|
T Consensus        35 ~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~  114 (223)
T d1uoha_          35 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN  114 (223)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcC
Confidence            4689999999999988888877662111                             45678889999999999999999


Q ss_pred             CHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHH
Q 013706           53 CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL  132 (438)
Q Consensus        53 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~  132 (438)
                      +.+++++|+++|++++.++..|.||||+|+    ..++..++++|+..+.+++..|.+|+||| +.++..++.+++++|+
T Consensus       115 ~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~----~~~~~~~~~~L~~~~~~i~~~d~~g~TpL-~~Aa~~g~~~~v~~LL  189 (223)
T d1uoha_         115 RHEIAVMLLEGGANPDAKDHYEATAMHRAA----AKGNLKMIHILLYYKASTNIQDTEGNTPL-HLACDEERVEEAKLLV  189 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCSCCCCTTCCCHH-HHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCccchhhh----hcCCcchhhhhccccceeeeccCCCCcee-ccccccCcHHHHHHHH
Confidence            999999999999999999999999999999    78899999999999999999999999999 5555577889999999


Q ss_pred             hccchHHHH
Q 013706          133 WHSEEQRKR  141 (438)
Q Consensus       133 ~~~~~~~~~  141 (438)
                      ..|++...+
T Consensus       190 ~~Gad~~~~  198 (223)
T d1uoha_         190 SQGASIYIE  198 (223)
T ss_dssp             HTTCCSCCC
T ss_pred             HCCCCCCCC
Confidence            888775543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.2e-21  Score=168.71  Aligned_cols=70  Identities=27%  Similarity=0.314  Sum_probs=61.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA   71 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   71 (438)
                      .+|+||||+||.+|+.++|+.|++.....|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~   70 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD   70 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccc
Confidence            4799999999999999999998853223688999999999999999999999999999999998666544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.83  E-value=2.1e-21  Score=176.50  Aligned_cols=80  Identities=21%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCC----CCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPG----NDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL   78 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L   78 (438)
                      .|+||||+||..|+.++|++|+.+..    ..|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|.|||
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            59999999999999999988754210    15889999999999999999999999999999999999998887666666


Q ss_pred             HHHh
Q 013706           79 HLSV   82 (438)
Q Consensus        79 ~~A~   82 (438)
                      ++|+
T Consensus       112 ~~a~  115 (277)
T d2fo1e1         112 HQAA  115 (277)
T ss_dssp             HHHH
T ss_pred             cchh
Confidence            6555

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-21  Score=171.39  Aligned_cols=126  Identities=31%  Similarity=0.461  Sum_probs=98.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCC----------------
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA----------------   65 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----------------   65 (438)
                      ..|+||||+||..|+.+++++|++    .|++++..|..|+||||+++..++.++++.|+..+.                
T Consensus        37 ~~g~TpLh~A~~~~~~~iv~~L~~----~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  112 (221)
T d1iknd_          37 NLQQTPLHLAVITNQPEIAEALLG----AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH  112 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHCCCS----CCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCC
T ss_pred             CCCCcccccccccccccccccccc----ccccccccccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            368899999999899998888888    678888888888888888887777777766665443                


Q ss_pred             -----------------------Ccccc-cCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccC
Q 013706           66 -----------------------FIEAK-ANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG  121 (438)
Q Consensus        66 -----------------------~~~~~-~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~  121 (438)
                                             .++.+ +.+|.||||+|+    ..|+.+++++|+++|+|++.+|..|+||| +.|+.
T Consensus       113 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~----~~g~~~~v~~Ll~~gad~~~~~~~G~tpl-~~A~~  187 (221)
T d1iknd_         113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV----DLQNPDLVSLLLKCGADVNRVTYQGYSPY-QLTWG  187 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHTTTCCSCCCCTTCCCGG-GGCTT
T ss_pred             hhhhHHhhcCChhheeeecccCcccccccccCCCCcccccc----ccccHHHHHHHHhcCCcccccCCCCCCHH-HHHHH
Confidence                                   33332 246888888888    78888999999999999999999999999 55666


Q ss_pred             CCchhHHHHHHhccc
Q 013706          122 PGSAKLRELLLWHSE  136 (438)
Q Consensus       122 ~~~~~~~~lL~~~~~  136 (438)
                      .++.+++++|.....
T Consensus       188 ~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         188 RPSTRIQQQLGQLTL  202 (221)
T ss_dssp             SSCHHHHHHHHTTSC
T ss_pred             CCCHHHHHHHHHcCC
Confidence            778888888876653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=7.4e-21  Score=157.07  Aligned_cols=118  Identities=29%  Similarity=0.418  Sum_probs=97.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHH---------------------------
Q 013706            4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA---------------------------   56 (438)
Q Consensus         4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~---------------------------   56 (438)
                      +.||||.||..|+.++|++||+    .|++++ .|..|+||||+|+..++.++                           
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~----~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMA----NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH----HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHH----cCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            3489999999999999999998    567776 58889999999998777655                           


Q ss_pred             ------HHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHH
Q 013706           57 ------AKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLREL  130 (438)
Q Consensus        57 ------v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~l  130 (438)
                            +++++.+|++++.+|..|+||||+|+    ..|+.+++++|+++|++++..|.+|.||| +.|+..++.+++++
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~----~~g~~~iv~~ll~~gad~~~~d~~g~Tpl-~~A~~~g~~eiv~l  151 (153)
T d1awcb_          77 EGHANIVEVLLKHGADVNAKDMLKMTALHWAT----EHNHQEVVELLIKYGADVHTQSKFCKTAF-DISIDNGNEDLAEI  151 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHH
T ss_pred             cccceeeecccccCCccccccccCchHHHhhh----hcchhheeeeccccccCCcccCCCCCCHH-HHHHHcCCHHHHHh
Confidence                  45555566677778889999999999    78899999999999999999999999999 55556778888887


Q ss_pred             H
Q 013706          131 L  131 (438)
Q Consensus       131 L  131 (438)
                      |
T Consensus       152 L  152 (153)
T d1awcb_         152 L  152 (153)
T ss_dssp             H
T ss_pred             C
Confidence            6

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=6.7e-21  Score=159.79  Aligned_cols=166  Identities=20%  Similarity=0.292  Sum_probs=132.2

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEEE
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE  236 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~~  236 (438)
                      .++-++|.+...+++.+++.                .....|++|.||||+|||++++.+|+.+....   .+....+++
T Consensus        20 ~ld~~igRd~Ei~~l~~iL~----------------r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~   83 (195)
T d1jbka_          20 KLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA   83 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred             CCCCCcCcHHHHHHHHHHHh----------------ccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEE
Confidence            56788999987777776632                33567999999999999999999999886432   245567899


Q ss_pred             eecccccc--cccccchHHHHHHHHHc--c--CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706          237 VQRTDLVG--EFVGHTGPKTRRRIKEA--E--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS  310 (438)
Q Consensus       237 ~~~~~~~~--~~~g~~~~~~~~~~~~a--~--~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~  310 (438)
                      ++.+.++.  +|.|+-+..+..++++.  .  +.||||||++.+....++.++   ..+-+.|...+..+.+.+|++|++
T Consensus        84 ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~---~d~~~~Lkp~L~rg~l~~IgatT~  160 (195)
T d1jbka_          84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALARGELHCVGATTL  160 (195)
T ss_dssp             ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHHTTSCCEEEEECH
T ss_pred             eeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCc---ccHHHHHHHHHhCCCceEEecCCH
Confidence            99998874  47788888888888664  2  359999999999865442211   134488899999999999999999


Q ss_pred             hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHH
Q 013706          311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL  345 (438)
Q Consensus       311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il  345 (438)
                      +.+...+..||+|.+|| .+|.+..|+.++-..|+
T Consensus       161 eey~~~~e~d~aL~rrF-~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         161 DEYRQYIEKDAALERRF-QKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHHHHHTTTCHHHHTTE-EEEECCCCCHHHHHTTC
T ss_pred             HHHHHHHHcCHHHHhcC-CEeecCCCCHHHHHHHh
Confidence            99999999999999999 99999999999887765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=8.3e-20  Score=160.79  Aligned_cols=201  Identities=21%  Similarity=0.224  Sum_probs=138.7

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.++++|..++.                ....+++||+||||||||++|+.+|+++.....  ...+++++
T Consensus        12 ~~~~d~ig~~~~~~~L~~~~~----------------~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~--~~~~~~~n   73 (224)
T d1sxjb2          12 QVLSDIVGNKETIDRLQQIAK----------------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY--ADGVLELN   73 (224)
T ss_dssp             SSGGGCCSCTHHHHHHHHHHH----------------SCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH--HHHEEEEC
T ss_pred             CCHHHhcCCHHHHHHHHHHHH----------------cCCCCeEEEECCCCCCchhhHHHHHHHHhcccc--cccccccc
Confidence            368999999999999998754                234568999999999999999999999864211  11356777


Q ss_pred             cccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec-
Q 013706          239 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-  308 (438)
Q Consensus       239 ~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~-  308 (438)
                      +++..+...-   .....-|...       +..++||||+|.+....+           +.|+..++.  ....+++++ 
T Consensus        74 ~~~~~~~~~i---~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~-----------~~ll~~~e~~~~~~~~i~~~~  139 (224)
T d1sxjb2          74 ASDDRGIDVV---RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ-----------QALRRTMELYSNSTRFAFACN  139 (224)
T ss_dssp             TTSCCSHHHH---HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH-----------HTTHHHHHHTTTTEEEEEEES
T ss_pred             ccccCCceeh---hhHHHHHHHhhccCCCcceEEEEEecccccchhHH-----------HHHhhhccccccceeeeeccC
Confidence            6654332110   0111112222       236999999999987444           677777764  334444443 


Q ss_pred             CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706          309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM  388 (438)
Q Consensus       309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (438)
                      +.+.+      .+++++|+ ..|.|++|+.+++..++...+.++.           ..++++++..++...       .|
T Consensus       140 ~~~~i------~~~l~sr~-~~i~~~~~~~~~i~~~l~~i~~~e~-----------~~i~~~~l~~I~~~s-------~G  194 (224)
T d1sxjb2         140 QSNKI------IEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLED-----------VKYTNDGLEAIIFTA-------EG  194 (224)
T ss_dssp             CGGGS------CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHHHHH-------TT
T ss_pred             chhhh------hhHHHHHH-HHhhhcccchhhhHHHHHHHHHhcc-----------cCCCHHHHHHHHHHc-------CC
Confidence            33332      78899998 7899999999999999999998753           345778888888765       57


Q ss_pred             cccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          389 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       389 n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                      +.|.+.+.++.+....              ..++.+++.+.+
T Consensus       195 d~R~ai~~Lq~~~~~~--------------~~i~~~~i~~~~  222 (224)
T d1sxjb2         195 DMRQAINNLQSTVAGH--------------GLVNADNVFKIV  222 (224)
T ss_dssp             CHHHHHHHHHHHHHHH--------------SSBCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcC--------------CCcCHHHHHHHh
Confidence            7888888888765332              346677766554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.82  E-value=2.8e-20  Score=164.69  Aligned_cols=187  Identities=25%  Similarity=0.295  Sum_probs=132.3

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .|++++|++.+++.+..++..                ...+++||+||||||||++|+++|+++....  ....++++++
T Consensus        22 ~~~diig~~~~~~~l~~~i~~----------------~~~~~lll~Gp~G~GKTtla~~iak~l~~~~--~~~~~~e~n~   83 (231)
T d1iqpa2          22 RLDDIVGQEHIVKRLKHYVKT----------------GSMPHLLFAGPPGVGKTTAALALARELFGEN--WRHNFLELNA   83 (231)
T ss_dssp             STTTCCSCHHHHHHHHHHHHH----------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGG--HHHHEEEEET
T ss_pred             CHHHccCcHHHHHHHHHHHHc----------------CCCCeEEEECCCCCcHHHHHHHHHHHHHhcc--cCCCeeEEec
Confidence            589999999999999988542                2456899999999999999999999885311  1225677777


Q ss_pred             ccccccccccchHHHHHHH-----HHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChh
Q 013706          240 TDLVGEFVGHTGPKTRRRI-----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP  312 (438)
Q Consensus       240 ~~~~~~~~g~~~~~~~~~~-----~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~  312 (438)
                      ++..+.....  .......     ......|+++||+|.+....+           +.|+..++.  ..+++|++++...
T Consensus        84 s~~~~~~~~~--~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~-----------~~ll~~l~~~~~~~~~i~~~n~~~  150 (231)
T d1iqpa2          84 SDERGINVIR--EKVKEFARTKPIGGASFKIIFLDEADALTQDAQ-----------QALRRTMEMFSSNVRFILSCNYSS  150 (231)
T ss_dssp             TCHHHHHTTH--HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH-----------HHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             CcccchhHHH--HHHHHHHhhhhccCCCceEEeehhhhhcchhHH-----------HHHhhhcccCCcceEEEeccCChh
Confidence            6643321110  1111111     122458999999999886433           677777764  4566666655433


Q ss_pred             HHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccc
Q 013706          313 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL  392 (438)
Q Consensus       313 ~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  392 (438)
                      .     .++++++|+ ..+.|++|+.+++..++++.+.++.           ..++++++..+++..       .|++|.
T Consensus       151 ~-----i~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~e~-----------i~i~~~~l~~I~~~~-------~gdiR~  206 (231)
T d1iqpa2         151 K-----IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEG-----------LELTEEGLQAILYIA-------EGDMRR  206 (231)
T ss_dssp             G-----SCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTT-----------CEECHHHHHHHHHHH-------TTCHHH
T ss_pred             h-----chHhHhCcc-ccccccccchhhHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHc-------CCCHHH
Confidence            2     278889998 7899999999999999999998753           345778888888765       467777


Q ss_pred             hHHHHHHHH
Q 013706          393 VDPMLVNAR  401 (438)
Q Consensus       393 l~~~~~~a~  401 (438)
                      +.+.++.+.
T Consensus       207 ai~~Lq~~~  215 (231)
T d1iqpa2         207 AINILQAAA  215 (231)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=4.4e-20  Score=160.54  Aligned_cols=124  Identities=29%  Similarity=0.422  Sum_probs=112.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCC-----------------------------------------------------
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGN-----------------------------------------------------   29 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~-----------------------------------------------------   29 (438)
                      +|.||||+||..|+.+++++|++.+..                                                     
T Consensus        22 ~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (209)
T d1ot8a_          22 TGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA  101 (209)
T ss_dssp             HCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            599999999999999999999984322                                                     


Q ss_pred             ----------CCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHh
Q 013706           30 ----------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE   99 (438)
Q Consensus        30 ----------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~   99 (438)
                                .+++++..+..|+|||++++..+...+++.++.++.+++..|..|.||||+|+    ..|+.+++++|++
T Consensus       102 ~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~----~~g~~~~v~~Ll~  177 (209)
T d1ot8a_         102 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAA----REGSYEASKALLD  177 (209)
T ss_dssp             CTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHH
T ss_pred             chhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhc----cccHHHHHHHHHH
Confidence                      34557778889999999999999999999999999999999999999999999    8899999999999


Q ss_pred             CCCCCcccCCCCCccccccccCCCchhHHHHH
Q 013706          100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELL  131 (438)
Q Consensus       100 ~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL  131 (438)
                      +|++++..|..|+||| +.|+..++.+++++|
T Consensus       178 ~gad~n~~d~~g~Tpl-~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         178 NFANREITDHMDRLPR-DVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHH
T ss_pred             CCCCCCCcCCCCCCHH-HHHHHcCCHHHHhhc
Confidence            9999999999999999 666667888899876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.1e-20  Score=153.94  Aligned_cols=120  Identities=30%  Similarity=0.469  Sum_probs=67.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      .|+||||+|+ .|+.+++++|++    .+.+++..+..|.+|+++++..++.++++.++++|+++|.+|..|.||||+||
T Consensus        35 ~g~t~L~~A~-~~~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~  109 (156)
T d1bd8a_          35 FGKTALQVMM-FGSTAIALELLK----QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV  109 (156)
T ss_dssp             TSCCHHHHSC-TTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             CCCccccccc-cccccccccccc----ccccccccccccccccccccccccccccccccccccccccccCCCCeeecccc
Confidence            4555555554 355555555555    34455555555555555555555555666666655555555555666666665


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW  133 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~  133 (438)
                          ..|+.+++++|+ .|++++.+|.+|+||| +.|+..++.+++++|+.
T Consensus       110 ----~~~~~~i~~~L~-~~~~~~~~d~~G~TpL-~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_         110 ----QEGHTAVVSFLA-AESDLHRRDARGLTPL-ELALQRGAQDLVDILQG  154 (156)
T ss_dssp             ----HHTCHHHHHHHH-TTSCTTCCCTTSCCHH-HHHHHSCCHHHHHHHHT
T ss_pred             ----cccccccccccc-ccccccccCCCCCCHH-HHHHHcCCHHHHHHHHh
Confidence                455555555544 4555555666666666 44444555555555554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.5e-20  Score=154.34  Aligned_cols=121  Identities=36%  Similarity=0.517  Sum_probs=104.4

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706            6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS   85 (438)
Q Consensus         6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   85 (438)
                      +|||+||..|+.++|++|++    .|+++|.+|..|+||||+|+ .|+.+++++|+++|++++.++..|.++++.++   
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~----~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~---   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ----NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAA---   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT----SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---
T ss_pred             HHHHHHHHcCCHHHHHHHHH----CCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccc---
Confidence            79999999999999999999    78999999999999999886 78999999999999999999998999998888   


Q ss_pred             cccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706           86 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE  136 (438)
Q Consensus        86 ~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~  136 (438)
                       ..++...+..|+..+.+++..|..|.+|+ +.++..+..+++++|+..+.
T Consensus        75 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~l-~~a~~~~~~~~~~~Ll~~~~  123 (156)
T d1ihba_          75 -RAGFLDTLQTLLEFQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTA  123 (156)
T ss_dssp             -HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSC
T ss_pred             -ccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence             77788888888888888888888888888 55555666777777765553

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=5.8e-20  Score=151.22  Aligned_cols=120  Identities=21%  Similarity=0.270  Sum_probs=104.7

Q ss_pred             HHHHHHHcCCHHHHHHHhcCCCCCCcccccc------cCCCChHHHHHHHc---CCHHHHHHHHHCCCCcccccCCCCcH
Q 013706            7 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ------NMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGMTP   77 (438)
Q Consensus         7 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~   77 (438)
                      .|+.|+..+++..+..++.    .|.+++..      +..|+||||+|+..   |+.+++++|+++|+++|.+|..|+||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~----~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~Tp   84 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYA----DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHH----TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred             HHHHHHHhCCHHHHHHHHH----cCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccc
Confidence            4567788999999998887    45555543      67899999999974   67899999999999999999999999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      ||+||    ..|+.+++++|+++|++++.+|.+|+||| +.|+..++.+++++|+..+
T Consensus        85 Lh~A~----~~~~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          85 LHYCC----LTDNAECLKLLLRGKASIEIANESGETPL-DIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHH
T ss_pred             ccccc----ccccccccccccccCccccccCCCCCCHH-HHHHHcCCHHHHHHHHHhC
Confidence            99999    88999999999999999999999999999 5666678899999998654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=8.2e-20  Score=164.02  Aligned_cols=203  Identities=15%  Similarity=0.186  Sum_probs=128.5

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCC-CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGL-KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV  237 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~  237 (438)
                      ..|++++|++..+++|++++............+. ..+....+++|||||||||||++|+++|++++.       .+..+
T Consensus        11 ~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~-------~~~~~   83 (253)
T d1sxja2          11 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-------DILEQ   83 (253)
T ss_dssp             SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-------EEEEE
T ss_pred             CCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-------hhhcc
Confidence            3689999999999999998765433322221121 223345678999999999999999999998875       67777


Q ss_pred             ecccccccccccch---------------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--C
Q 013706          238 QRTDLVGEFVGHTG---------------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--G  300 (438)
Q Consensus       238 ~~~~~~~~~~g~~~---------------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~  300 (438)
                      +.++..+.+..+..               .............++++||+|.+....+        .....++.....  .
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~--------~~~~~~~~~~~~~~~  155 (253)
T d1sxja2          84 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKTST  155 (253)
T ss_dssp             CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHCSS
T ss_pred             ccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchh--------hhhHHHhhhhccccc
Confidence            77665433221100               0000000111347999999999987655        233455555443  3


Q ss_pred             CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706          301 KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET  380 (438)
Q Consensus       301 ~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (438)
                      .+++++++.....      .+.+++| ...|+|++|+.+++..+++..+.++       ++    .++++++..++... 
T Consensus       156 ~ii~i~~~~~~~~------~~~l~~~-~~~i~f~~~~~~~i~~~l~~i~~~e-------~i----~i~~~~l~~i~~~s-  216 (253)
T d1sxja2         156 PLILICNERNLPK------MRPFDRV-CLDIQFRRPDANSIKSRLMTIAIRE-------KF----KLDPNVIDRLIQTT-  216 (253)
T ss_dssp             CEEEEESCTTSST------TGGGTTT-SEEEECCCCCHHHHHHHHHHHHHHH-------TC----CCCTTHHHHHHHHT-
T ss_pred             ccccccccccccc------cccccce-eeeeeccccchhHHHHHHHHHHHHh-------CC----CCCHHHHHHHHHhC-
Confidence            3444443333222      2334544 5999999999999999999998765       23    34556788887754 


Q ss_pred             hHhhhccccccchHHHHHHHH
Q 013706          381 TEKQRREMNGGLVDPMLVNAR  401 (438)
Q Consensus       381 ~~~~~~~~n~~~l~~~~~~a~  401 (438)
                            .|+.|.+.+.++.+.
T Consensus       217 ------~GDiR~ai~~L~~~~  231 (253)
T d1sxja2         217 ------RGDIRQVINLLSTIS  231 (253)
T ss_dssp             ------TTCHHHHHHHHTHHH
T ss_pred             ------CCcHHHHHHHHHHHH
Confidence                  455666666665443

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=7.5e-19  Score=161.31  Aligned_cols=221  Identities=19%  Similarity=0.285  Sum_probs=151.3

Q ss_pred             HHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706          157 LENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT  235 (438)
Q Consensus       157 ~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~  235 (438)
                      +.+.+ ..++||+.+++.+...+...       ..+......+...+||+||||||||.+|+.+|+.+...    ..+++
T Consensus        17 l~~~L~~~v~GQ~~ai~~v~~~i~~~-------~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~----~~~~~   85 (315)
T d1qvra3          17 LEEELHKRVVGQDEAIRAVADAIRRA-------RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMI   85 (315)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHHH-------GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS----GGGEE
T ss_pred             HHHHhcCeEeCHHHHHHHHHHHHHHH-------hcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCC----CcceE
Confidence            44444 45789999999888764432       12222222233357899999999999999999998421    22788


Q ss_pred             Eeecccccc-----c-------ccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--
Q 013706          236 EVQRTDLVG-----E-------FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--  300 (438)
Q Consensus       236 ~~~~~~~~~-----~-------~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--  300 (438)
                      .++.+++..     +       |+|+.+ ..+.+.+.+...+|+|+||||++.+           .+++.|++.++++  
T Consensus        86 ~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~-----------~v~~~ll~~l~~g~~  154 (315)
T d1qvra3          86 RIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRL  154 (315)
T ss_dssp             EECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEE
T ss_pred             EEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCH-----------HHHHHHHHHhccCce
Confidence            887765432     2       444432 3466777777889999999999987           5678999998763  


Q ss_pred             -----------CEEEEEecCChhHH--H------------------H-hhhCcCccCCCCcceeCCCCCHHHHHHHHHHH
Q 013706          301 -----------KVVVIFAGYSEPMK--R------------------V-IASNEGFCRRVTKFFHFNDFNSEELAKILHIK  348 (438)
Q Consensus       301 -----------~v~vi~~~~~~~~~--~------------------~-~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~  348 (438)
                                 +.++|++++-..-.  .                  + -.-.|++.+||+.++.|.+++.+++.+|+...
T Consensus       155 ~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~  234 (315)
T d1qvra3         155 TDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ  234 (315)
T ss_dssp             CCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHH
T ss_pred             eCCCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHH
Confidence                       45777777632110  0                  0 01248899999999999999999999999988


Q ss_pred             HhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706          349 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~  405 (438)
                      +.+...+....  .+...++++++..+++..+  +  ...++|.++..+++.+....
T Consensus       235 l~~l~~rl~~~--~i~l~i~~~~~~~L~~~~y--~--~~~GAR~L~r~Ie~~i~~~L  285 (315)
T d1qvra3         235 LSYLRARLAEK--RISLELTEAAKDFLAERGY--D--PVFGARPLRRVIQRELETPL  285 (315)
T ss_dssp             HHHHHHHHHTT--TCEEEECHHHHHHHHHHHC--B--TTTBTSTHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHhc--cccccccHHHHHHHHHhCC--C--CCCCcchHHHHHHHHHHHHH
Confidence            88776544333  3456678899999988643  1  13446999999988776543

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=9.3e-19  Score=161.07  Aligned_cols=221  Identities=17%  Similarity=0.240  Sum_probs=155.0

Q ss_pred             hHHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC
Q 013706          153 KMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT  231 (438)
Q Consensus       153 ~~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~  231 (438)
                      .+..+...++ .++|++.+++.+...+...       ..+......+...+||.||||||||.+|+.||+.++.      
T Consensus        12 ~l~~l~~~L~~~viGQ~~a~~~v~~~v~~~-------~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~------   78 (315)
T d1r6bx3          12 TLKNLGDRLKMLVFGQDKAIEALTEAIKMA-------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI------   78 (315)
T ss_dssp             HHHHHHHHHTTTSCSCHHHHHHHHHHHHHH-------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC------
T ss_pred             HHHHHHHHhCCeecChHHHHHHHHHHHHHH-------HccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccC------
Confidence            3445566665 5889999999998864322       1222222233446899999999999999999998865      


Q ss_pred             CCEEEeecccccc-----ccccc-------ch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706          232 DRVTEVQRTDLVG-----EFVGH-------TG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD  298 (438)
Q Consensus       232 ~~~~~~~~~~~~~-----~~~g~-------~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~  298 (438)
                       +++.++.+++..     +++|.       .. ..+...+.+...+|+++||+|+..+           .+.+.|++.++
T Consensus        79 -~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~-----------~V~~~lLqild  146 (315)
T d1r6bx3          79 -ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMD  146 (315)
T ss_dssp             -EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHH
T ss_pred             -CeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHhCccchhhhcccccccc-----------hHhhhhHHhhc
Confidence             889888876532     23333       21 2345566777889999999999986           56789999987


Q ss_pred             CC-------------CEEEEEecCChhHH-------------------HH-hhhCcCccCCCCcceeCCCCCHHHHHHHH
Q 013706          299 GG-------------KVVVIFAGYSEPMK-------------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKIL  345 (438)
Q Consensus       299 ~~-------------~v~vi~~~~~~~~~-------------------~~-~~~~p~l~~R~~~~i~~~~~~~~e~~~il  345 (438)
                      ++             +.++|++++-....                   .+ -.-.|.|+.|++.++.|.+++.++...|+
T Consensus       147 ~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~  226 (315)
T d1r6bx3         147 NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV  226 (315)
T ss_dssp             HSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred             cceecCCCCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHH
Confidence            52             35677766521100                   00 01258999999999999999999999999


Q ss_pred             HHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706          346 HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL  404 (438)
Q Consensus       346 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~  404 (438)
                      ..++.+...+....  .+...++++++..++...+  +  ....+|.|+.++++-....
T Consensus       227 ~~~l~~~~~~l~~~--~i~l~~~~~a~~~l~~~~y--d--~~~GaR~L~r~Ie~~i~~~  279 (315)
T d1r6bx3         227 DKFIVELQVQLDQK--GVSLEVSQEARNWLAEKGY--D--RAMGARPMARVIQDNLKKP  279 (315)
T ss_dssp             HHHHHHHHHHHHHT--TEEEEECHHHHHHHHHHHC--B--TTTBTTTHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhc--CcchhhHHHHHHHHHHhCC--C--CCCChhhHHHHHHHHHHHH
Confidence            99888776544333  3445678899999988654  1  1234699999998776654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=2e-19  Score=159.86  Aligned_cols=211  Identities=18%  Similarity=0.241  Sum_probs=137.0

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ  238 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~  238 (438)
                      ..|++++|++.+++.++.++.                ....++++|+||||||||++++++++++...... .....+.+
T Consensus         9 ~~~~diig~~~~~~~l~~~i~----------------~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~-~~~~~~~~   71 (237)
T d1sxjd2           9 KNLDEVTAQDHAVTVLKKTLK----------------SANLPHMLFYGPPGTGKTSTILALTKELYGPDLM-KSRILELN   71 (237)
T ss_dssp             SSTTTCCSCCTTHHHHHHHTT----------------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHH-TTSEEEEC
T ss_pred             CCHHHccCcHHHHHHHHHHHH----------------cCCCCeEEEECCCCCChHHHHHHHHHHHcCCccc-ccchhhee
Confidence            368999999999988887732                2345679999999999999999999988432211 12344555


Q ss_pred             ccccccc-ccccchHHHH---------HHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEE
Q 013706          239 RTDLVGE-FVGHTGPKTR---------RRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVV  303 (438)
Q Consensus       239 ~~~~~~~-~~g~~~~~~~---------~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~  303 (438)
                      .+...+. .+....+...         ..++..   ...|+||||+|.+....+           +.++..++.  ....
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~-----------~~l~~~~~~~~~~~~  140 (237)
T d1sxjd2          72 ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQ-----------SALRRTMETYSGVTR  140 (237)
T ss_dssp             SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHH-----------HHHHHHHHHTTTTEE
T ss_pred             ccccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHH-----------HHHhhcccccccccc
Confidence            4433221 1111111110         011111   225999999999976332           455555442  3334


Q ss_pred             EEEecC-ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhH
Q 013706          304 VIFAGY-SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE  382 (438)
Q Consensus       304 vi~~~~-~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (438)
                      +|.+++ .+..      .+++++|| ..|.|++|+.+++.++++..+.++.           ..++++++..++...   
T Consensus       141 ~i~~~~~~~~~------~~~l~sr~-~~i~f~~~~~~~~~~~L~~i~~~e~-----------i~i~~~~l~~ia~~s---  199 (237)
T d1sxjd2         141 FCLICNYVTRI------IDPLASQC-SKFRFKALDASNAIDRLRFISEQEN-----------VKCDDGVLERILDIS---  199 (237)
T ss_dssp             EEEEESCGGGS------CHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHHHHT---
T ss_pred             ccccccccccc------cccccchh-hhhccccccccccchhhhhhhhhhc-----------CcCCHHHHHHHHHHc---
Confidence            444433 3332      67788898 8899999999999999999887652           346788888888765   


Q ss_pred             hhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706          383 KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL  430 (438)
Q Consensus       383 ~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~  430 (438)
                          .|+.|.+.+.++.+...+....        ....||.+++.+++
T Consensus       200 ----~gd~R~ai~~L~~~~~~~~~~~--------~~~~It~~~i~e~~  235 (237)
T d1sxjd2         200 ----AGDLRRGITLLQSASKGAQYLG--------DGKNITSTQVEELA  235 (237)
T ss_dssp             ----SSCHHHHHHHHHHTHHHHHHHC--------SCCCCCHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHHHHhchhcC--------CCCccCHHHHHHhh
Confidence                5778888888887765542211        11358888888765

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.9e-19  Score=148.01  Aligned_cols=93  Identities=28%  Similarity=0.314  Sum_probs=87.3

Q ss_pred             CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHH
Q 013706            3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH   79 (438)
Q Consensus         3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   79 (438)
                      .|+||||+|+..   |+.++|++|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        44 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~----~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~  119 (154)
T d1dcqa1          44 PDETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD  119 (154)
T ss_dssp             TTCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCchHHHHHHhcCCCCHHHHHHHHH----cCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHH
Confidence            589999999974   78999999999    78999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCcHHHHHHHHhCCCC
Q 013706           80 LSVWYSIRSEDYATVKTLLEYNAD  103 (438)
Q Consensus        80 ~A~~~~~~~~~~~~~~~Ll~~ga~  103 (438)
                      +|+    ..|+.+++++|++.++.
T Consensus       120 ~A~----~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         120 IAK----RLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHH----HTTCHHHHHHHHHHHTT
T ss_pred             HHH----HcCCHHHHHHHHHhCCC
Confidence            999    88999999999987554

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.79  E-value=1.2e-19  Score=161.00  Aligned_cols=214  Identities=16%  Similarity=0.156  Sum_probs=148.9

Q ss_pred             hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706          164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  243 (438)
Q Consensus       164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~  243 (438)
                      .+|.+...+.+.+.+..+              +....+|+++||||||||.+|++|+..    +.....+++.+++..+.
T Consensus         2 ~v~~S~~~~~~~~~~~~~--------------a~~~~pvlI~Ge~GtGK~~~A~~ih~~----s~~~~~~~~~~~~~~~~   63 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKI--------------SCAECPVLITGESGVGKEVVARLIHKL----SDRSKEPFVALNVASIP   63 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHH--------------TTCCSCEEEECSTTSSHHHHHHHHHHH----STTTTSCEEEEETTTSC
T ss_pred             eEecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHh----cCCcccccccchhhhhh
Confidence            467777666666655544              346678999999999999999999984    33345688888886543


Q ss_pred             c-----cccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------------
Q 013706          244 G-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------  299 (438)
Q Consensus       244 ~-----~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------  299 (438)
                      .     ..+|...       ......|+.+.+|+|||||||.+.+..|           ..|+..+++            
T Consensus        64 ~~~~~~~lfg~~~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~~~~~~~~~~~  132 (247)
T d1ny5a2          64 RDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQ-----------AKLLRVIESGKFYRLGGRKEI  132 (247)
T ss_dssp             HHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHH-----------HHHHHHHHHSEECCBTCCSBE
T ss_pred             hcccHHHhcCcccCCcCCcccccCCHHHccCCCEEEEeChHhCCHHHH-----------HHHHHHHHhCCEEECCCCCce
Confidence            2     2344321       1224578999999999999999987444           666666643            


Q ss_pred             -CCEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706          300 -GKVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  373 (438)
Q Consensus       300 -~~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~  373 (438)
                       .++.+|++++.+.....-.  .++.|..|+ ...|.+|++.  .+++..|+..++.+...+   ++.. ...++.+++.
T Consensus       133 ~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~---~~~~-~~~ls~~al~  208 (247)
T d1ny5a2         133 EVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRK---YAKE-VEGFTKSAQE  208 (247)
T ss_dssp             ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCC-CCEECHHHHH
T ss_pred             ecCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhh---cCCC-CCCCCHHHHH
Confidence             1457888877655432211  133455565 4568889985  589999999998876532   1222 2458999999


Q ss_pred             HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHH
Q 013706          374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA  428 (438)
Q Consensus       374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~  428 (438)
                      .+..+.|      |||.++|++++++|...+            +-..|+.+|+..
T Consensus       209 ~L~~~~W------PGNl~EL~~~l~~a~~~~------------~~~~I~~~dl~~  245 (247)
T d1ny5a2         209 LLLSYPW------YGNVRELKNVIERAVLFS------------EGKFIDRGELSC  245 (247)
T ss_dssp             HHHHSCC------TTHHHHHHHHHHHHHHHC------------CSSEECHHHHHH
T ss_pred             HHHhCCC------CCHHHHHHHHHHHHHHhC------------CCCeECHHHccc
Confidence            9999999      999999999999998664            123577777753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.8e-19  Score=164.72  Aligned_cols=110  Identities=27%  Similarity=0.346  Sum_probs=88.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCH-------HHHHHHH-------------
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN-------EAAKLLL-------------   61 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~-------~~v~~Ll-------------   61 (438)
                      ..|+||||+||..|+.++|++|++    .|++++.+|..|+||||.||..++.       ++++++.             
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~----~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~  180 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI  180 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCH
Confidence            469999999999999999999999    7899999999999999999986542       2222221             


Q ss_pred             -----------------------------HCCC-------------------------------------CcccccCCCC
Q 013706           62 -----------------------------AHGA-------------------------------------FIEAKANNGM   75 (438)
Q Consensus        62 -----------------------------~~g~-------------------------------------~~~~~~~~g~   75 (438)
                                                   ..+.                                     .+|.+|..|+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~  260 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD  260 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSC
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCC
Confidence                                         1111                                     1577788888


Q ss_pred             cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706           76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS  119 (438)
Q Consensus        76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a  119 (438)
                      ||||+|+    ..|+.+++++|+++|+++++.|..|+|||++++
T Consensus       261 TpLh~A~----~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         261 TCLNIAA----RLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CHHHHHH----HHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            8888888    788888888888888888888888888885543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.77  E-value=5.8e-18  Score=153.43  Aligned_cols=232  Identities=17%  Similarity=0.179  Sum_probs=146.6

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      +.++|.+..++++.+++....   .       ....++.+++|+||||||||++|+.+++.+....   ...++.+++..
T Consensus        16 ~~l~~Re~ei~~l~~~l~~~l---~-------~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~---~~~~~~~~~~~   82 (276)
T d1fnna2          16 KRLPHREQQLQQLDILLGNWL---R-------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYINGFI   82 (276)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHH---H-------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEETTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHH---h-------CCCCCCCceEEECCCCCCHHHHHHHHHHHHhccc---CCcEEEecchh
Confidence            457888877777777654321   1       1124678999999999999999999999985422   12445554432


Q ss_pred             ccc----------------cccccchHHHHHHH----HH-ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhh---c
Q 013706          242 LVG----------------EFVGHTGPKTRRRI----KE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---M  297 (438)
Q Consensus       242 ~~~----------------~~~g~~~~~~~~~~----~~-a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~---~  297 (438)
                      ...                ...+.........+    .. ....++++|++|.+.....        .....++..   .
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~~~~~~~~~~  154 (276)
T d1fnna2          83 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDIL--------STFIRLGQEADKL  154 (276)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHH--------HHHHHHTTCHHHH
T ss_pred             hhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhh--------hhHHHHHhccccc
Confidence            111                11111222222211    22 2347888999998865221        222222222   2


Q ss_pred             cCCCEEEEEecCChhHHHHhhhCcCccCCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHH
Q 013706          298 DGGKVVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI  376 (438)
Q Consensus       298 ~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (438)
                      ....+.+|++++.......  .+|++.+|+ ...|.|++|+.+|+.+|+++++....         ....++++++..+.
T Consensus       155 ~~~~~~~i~~~~~~~~~~~--~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~---------~~~~~~~~~l~~ia  223 (276)
T d1fnna2         155 GAFRIALVIVGHNDAVLNN--LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL---------AEGSYSEDILQMIA  223 (276)
T ss_dssp             SSCCEEEEEEESSTHHHHT--SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB---------CTTSSCHHHHHHHH
T ss_pred             cccceEEeecCCchhhhhh--cchhhhhhhcchhccccchhHHHHHHHHHHHHHHhc---------ccccccHHHHHHHH
Confidence            3456777777666554322  277787776 56799999999999999998887532         12335777777776


Q ss_pred             HHHhhHh--hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706          377 EKETTEK--QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL  434 (438)
Q Consensus       377 ~~~~~~~--~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~  434 (438)
                      .......  ....||.|.+.++++.|...|..         .+...|+.+|+++|++++.
T Consensus       224 ~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~---------~~~~~I~~edv~~A~~~~~  274 (276)
T d1fnna2         224 DITGAQTPLDTNRGDARLAIDILYRSAYAAQQ---------NGRKHIAPEDVRKSSKEVL  274 (276)
T ss_dssp             HHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH---------TTCSSCCHHHHHHHHHHHS
T ss_pred             HHhhhhhhhhhcCCCHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHh
Confidence            6542111  12358889999999998877622         2345799999999999874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.77  E-value=1e-17  Score=156.37  Aligned_cols=237  Identities=16%  Similarity=0.254  Sum_probs=144.3

Q ss_pred             HHHHHHh-hhcChHHHHHHHHHHHH----HhhhHHHHHh----------cCCCCCCCCCCceEEecCCCCCHHHHHHHHH
Q 013706          156 ELENELS-NIVGLHELKIQLRKWAK----GMLLDERRKA----------LGLKVGARRPPHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       156 ~~~~~l~-~i~G~~~~~~~l~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~ll~GppGtGKT~la~~la  220 (438)
                      ++.+.++ .++||+++++.+...+.    ++..+...+.          .+......+++++||.||+|||||.+||+||
T Consensus        10 ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          10 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHhCCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHH
Confidence            3444554 48899999888875442    1111111111          0111123478899999999999999999999


Q ss_pred             HHHHHcCCcCCCCEEEeeccccccc-cccc-chHHHHHHH-------HHccCcEEEEeCcccccCCCCCCC--ch-hHHH
Q 013706          221 RLLYMVGILPTDRVTEVQRTDLVGE-FVGH-TGPKTRRRI-------KEAEGGILFVDEAYRLIPMQKADD--KD-YGIE  288 (438)
Q Consensus       221 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~-~~~~~~~~~-------~~a~~~il~iDEid~l~~~~~~~~--~~-~~~~  288 (438)
                      +.+..       +|+.++.+.+... |+|+ .+..+++++       ..+..+|+|+||+|+..+......  .+ ....
T Consensus        90 ~~~~~-------~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~  162 (364)
T d1um8a_          90 KHLDI-------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEG  162 (364)
T ss_dssp             HHTTC-------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHH
T ss_pred             hhccc-------ceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchH
Confidence            97654       8999999877543 6665 444556654       344569999999999987543211  11 2346


Q ss_pred             HHHHHHhhccCCC---------------EEEEEecC--------ChhHHH------------------------------
Q 013706          289 ALEEIMSVMDGGK---------------VVVIFAGY--------SEPMKR------------------------------  315 (438)
Q Consensus       289 ~~~~ll~~~~~~~---------------v~vi~~~~--------~~~~~~------------------------------  315 (438)
                      +.+.||+.++++.               .+++.+++        ....+.                              
T Consensus       163 V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (364)
T d1um8a_         163 VQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLV  242 (364)
T ss_dssp             HHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGC
T ss_pred             HHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccc
Confidence            7889999998522               12222221        111111                              


Q ss_pred             ----Hh--hhCcCccCCCCcceeCCCCCHHHHHHHHHH----HHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706          316 ----VI--ASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR  385 (438)
Q Consensus       316 ----~~--~~~p~l~~R~~~~i~~~~~~~~e~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (438)
                          ++  .-.|.|..|||.++.|.+++.+++.+|+..    .+++.......+|  +...++++++..++...+  +  
T Consensus       243 ~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~g--i~L~~td~a~~~la~~g~--d--  316 (364)
T d1um8a_         243 QTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDE--VDLIFEEEAIKEIAQLAL--E--  316 (364)
T ss_dssp             CHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTT--CEEEECHHHHHHHHHHHH--H--
T ss_pred             cHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECHHHHHHHHHhcc--C--
Confidence                11  014889999999999999999999999974    2322221111123  445678999999998654  2  


Q ss_pred             ccccccchHHHHHHHHHHhh
Q 013706          386 REMNGGLVDPMLVNARENLD  405 (438)
Q Consensus       386 ~~~n~~~l~~~~~~a~~~~~  405 (438)
                      ....+|.|+.++++......
T Consensus       317 ~~~GAR~L~riie~~l~~~~  336 (364)
T d1um8a_         317 RKTGARGLRAIIEDFCLDIM  336 (364)
T ss_dssp             TTCTGGGHHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHh
Confidence            23457999999998877653

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=7e-19  Score=155.07  Aligned_cols=128  Identities=22%  Similarity=0.235  Sum_probs=92.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-------------
Q 013706            5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-------------   71 (438)
Q Consensus         5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-------------   71 (438)
                      .||||+||..|+.++|+.|++.   .+.+++.+|.+|+||||+|+..|+.+++++|+++|++++..+             
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~---~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHS---KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHH---CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHc---CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccc
Confidence            4788888888888888877763   456777788888888888888888888888888877665322             


Q ss_pred             ----------------------------------------------------------CCCCcHHHHHhhcccccCcHHH
Q 013706           72 ----------------------------------------------------------NNGMTPLHLSVWYSIRSEDYAT   93 (438)
Q Consensus        72 ----------------------------------------------------------~~g~t~L~~A~~~~~~~~~~~~   93 (438)
                                                                                ..|+||||+|+    ..++.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~----~~~~~~~  153 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA----SVGSLKL  153 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HHTCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhh----hcccccc
Confidence                                                                      25677777777    6677788


Q ss_pred             HHHHHhCC-CCCcccCCCCCccccccccCCCchhHHHHHHh-ccchHHH
Q 013706           94 VKTLLEYN-ADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW-HSEEQRK  140 (438)
Q Consensus        94 ~~~Ll~~g-a~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~-~~~~~~~  140 (438)
                      +++|+..+ .+++.+|.+|+||| |.|+..++.+++++|+. .|++...
T Consensus       154 ~~~Ll~~~~~~in~~d~~g~TpL-h~A~~~~~~~~v~~Ll~~~gad~~~  201 (229)
T d1ixva_         154 IELLCGLGKSAVNWQDKQGWTPL-FHALAEGHGDAAVLLVEKYGAEYDL  201 (229)
T ss_dssp             HHHHHTTTCCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred             cccccccccccccccccccCCch-hhhcccccHHHHHHHHHhcCCCCCC
Confidence            88888775 56777888888888 45555667777777764 4655433

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=3.3e-19  Score=163.18  Aligned_cols=131  Identities=25%  Similarity=0.295  Sum_probs=111.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC----------
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN----------   72 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------   72 (438)
                      +|.||||.||..|+.++|++|++    .|+++|..|.+|+||||+|+..|+.+++++|+++|++.+..+.          
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~----~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLE----RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH----HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccc
Confidence            35689999999999999999998    7889999999999999999999999999999999876544333          


Q ss_pred             --------------------------------------------------------------------------------
Q 013706           73 --------------------------------------------------------------------------------   72 (438)
Q Consensus        73 --------------------------------------------------------------------------------   72 (438)
                                                                                                      
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             cccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence                                                                                            


Q ss_pred             ---CCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706           73 ---NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR  142 (438)
Q Consensus        73 ---~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~  142 (438)
                         .|.||||+|+    ..|+.++++.|++.|++++.++.+|+||| |.|+..++.+++++|+.+|++...++
T Consensus       195 ~~~~g~t~L~~a~----~~~~~~~~~~Ll~~g~din~~~~~g~TpL-~~A~~~g~~~iv~lLl~~Gadv~~~d  262 (291)
T d1s70b_         195 HAKSGGTALHVAA----AKGYTEVLKLLIQARYDVNIKDYDGWTPL-HAAAHWGKEEACRILVENLCDMEAVN  262 (291)
T ss_dssp             CTTTCCCHHHHHH----HHTCHHHHHHHHTTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ccCCCCChhhHHH----HcCChhhhcccccceecccccccCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence               4556666666    66889999999999999999999999999 66666788999999999998766543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.76  E-value=3e-20  Score=174.64  Aligned_cols=129  Identities=12%  Similarity=0.055  Sum_probs=109.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHH---HhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc--CCCCcH
Q 013706            3 MAQTPLHVSAGYNKAEIVKS---LLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--NNGMTP   77 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--~~g~t~   77 (438)
                      .|.||||+||.+||.+++++   |++    .|+++|..|..|+||||+||..||.++|++|+++|++++..+  .+|+||
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~----~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLT----SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC------CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHh----CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            67899999999999988776   566    789999999999999999999999999999999999998876  459999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcc---cCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSA---KDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK  140 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~---~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~  140 (438)
                      ||+||    .+|+.+++++|++.|+++..   .+.++.||+ ++|+..++.+++++|+..+++...
T Consensus       165 L~~Aa----~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l-~~A~~~g~~~iv~~Ll~~ga~~~~  225 (346)
T d2ajaa1         165 FRLAA----ENGHLHVLNRLCELAPTEATAMIQAENYYAFR-WAAVGRGHHNVINFLLDCPVMLAY  225 (346)
T ss_dssp             HHHHH----HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHH-HHHSTTCCHHHHHHHTTSHHHHHH
T ss_pred             hHHHH----HHhhHHHHHHHHHcCCcccccccccCCCcchh-hHHhhcCHHHHHHHHHhCCCCcch
Confidence            99999    89999999999999887643   344566666 778888899999999988876543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.76  E-value=9e-18  Score=153.02  Aligned_cols=243  Identities=10%  Similarity=0.042  Sum_probs=146.4

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC--CCEEEeec
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT--DRVTEVQR  239 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~--~~~~~~~~  239 (438)
                      +.+.|.+...+.|.+++....   ..   +. ........++|+||||||||++++++++.+........  ..++.+++
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~---~~---~~-~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~   88 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRL---LS---GA-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA   88 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHH---HT---SS-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred             CCCCCHHHHHHHHHHHHHHHH---Hc---CC-CCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeecc
Confidence            567777766666665432111   11   11 00111224677899999999999999999854322111  23333443


Q ss_pred             ccccc----------------cccccchHHHHHHHHH-----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc-
Q 013706          240 TDLVG----------------EFVGHTGPKTRRRIKE-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-  297 (438)
Q Consensus       240 ~~~~~----------------~~~g~~~~~~~~~~~~-----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~-  297 (438)
                      .....                ...|.....+.+.+.+     ....++++||+|.+....+..  ......+..+...+ 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~--~~~~~~l~~l~~~l~  166 (287)
T d1w5sa2          89 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA--AEDLYTLLRVHEEIP  166 (287)
T ss_dssp             GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC--HHHHHHHHTHHHHSC
T ss_pred             ccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccc--hhHHHHHHHHHHhcc
Confidence            32111                1223343443333322     234788999999997655421  11112222333322 


Q ss_pred             ---cCCCEEEEE-ecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706          298 ---DGGKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA  373 (438)
Q Consensus       298 ---~~~~v~vi~-~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~  373 (438)
                         ......+|+ ++..+..+.+...+|++.+||+..+.|++|+.+|+.+|++..+....         ....++++++.
T Consensus       167 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~---------~~~~~~~~al~  237 (287)
T d1w5sa2         167 SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL---------RDTVWEPRHLE  237 (287)
T ss_dssp             CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB---------CTTSCCHHHHH
T ss_pred             hhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhh---------ccCCCCHHHHH
Confidence               234555554 44455555555668899999999999999999999999998886431         12346778887


Q ss_pred             HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706          374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  432 (438)
Q Consensus       374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~  432 (438)
                      .+++... ......|+.|.+.++++.|.+.|.         .+....|+.+|+++|+++
T Consensus       238 ~ia~~~~-~~~~~~gd~R~ai~~l~~a~~~A~---------~~~~~~It~~~V~~A~~e  286 (287)
T d1w5sa2         238 LISDVYG-EDKGGDGSARRAIVALKMACEMAE---------AMGRDSLSEDLVRKAVSE  286 (287)
T ss_dssp             HHHHHHC-GGGTSCCCHHHHHHHHHHHHHHHH---------HTTCSSCCHHHHHHHHHH
T ss_pred             HHHHHHh-ccccCCCCHHHHHHHHHHHHHHHH---------HcCCCCCCHHHHHHHHhc
Confidence            7776543 222335677888888888887762         223468999999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=8.7e-18  Score=147.94  Aligned_cols=123  Identities=24%  Similarity=0.363  Sum_probs=111.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCC-CCcccccCCCCcHHHHH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLS   81 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A   81 (438)
                      .+.|||+.++..++.+++++|++    .+.+.+..|..|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~l~~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A  179 (229)
T d1ixva_         104 QGVTCLHLAVGKKWFEVSQFLIE----NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA  179 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHH
T ss_pred             ccccccccccccchhhhhhhhhh----hcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhh
Confidence            57899999999999999999998    67888889999999999999999999999999987 68899999999999999


Q ss_pred             hhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706           82 VWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE  137 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~  137 (438)
                      +    ..++.+++++|++ .|++++.+|.+|+|||++ |.   ..+++++|+..|++
T Consensus       180 ~----~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~-A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         180 L----AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV-AL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             H----HTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGG-CS---CHHHHHHHHHHCCC
T ss_pred             c----ccccHHHHHHHHHhcCCCCCCcCCCCCCHHHH-Hh---hHHHHHHHHHcCCC
Confidence            9    8899999999996 599999999999999955 44   24788999887764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.3e-18  Score=164.01  Aligned_cols=123  Identities=29%  Similarity=0.430  Sum_probs=112.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|.||||.|+..++.+++++|++    .|++++..+..+.||||.++..++.++++.+++.|+++|.+|..|.||||+|
T Consensus       262 ~~g~~~l~~a~~~~~~~i~~~Ll~----~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A  337 (408)
T d1n11a_         262 KSGLTPLHLVAQEGHVPVADVLIK----HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA  337 (408)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCChhhhhhhcCcHHHHHHHHH----CCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHH
Confidence            368899999999999999999998    7888999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706           82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW  133 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~  133 (438)
                      +    ..|+.+++++|+++|++++.+|.+|+||| +.|...++.+++++|..
T Consensus       338 ~----~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L-~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         338 A----QQGHTDIVTLLLKNGASPNEVSSDGTTPL-AIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             H----HTTCHHHHHHHHHTTCCSCCCCSSSCCHH-HHHHHTTCHHHHHHHHH
T ss_pred             H----HcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHH
Confidence            9    88999999999999999999999999999 66666788888887753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.1e-17  Score=156.84  Aligned_cols=191  Identities=21%  Similarity=0.262  Sum_probs=128.2

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEE
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT  235 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~  235 (438)
                      ..++-++|.+.-..++.+++.                .....|+||.||||+|||+++..+|..+....   .+....++
T Consensus        19 g~ld~~~gr~~ei~~~~~~L~----------------r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~   82 (387)
T d1qvra2          19 GKLDPVIGRDEEIRRVIQILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV   82 (387)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred             CCCCCCcCcHHHHHHHHHHHh----------------cCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEE
Confidence            357788999987777777632                34667899999999999999999999775422   23446789


Q ss_pred             Eeecccccc--cccccchHHHHHHHHHc---c-CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706          236 EVQRTDLVG--EFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       236 ~~~~~~~~~--~~~g~~~~~~~~~~~~a---~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      .++.+.++.  +|.|+-+..+..++.+.   . +.||||||+|.+....++.   .+..+-+.|.+.+..+.+.+|++||
T Consensus        83 ~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~---g~~d~a~~Lkp~L~rg~~~~I~~tT  159 (387)
T d1qvra2          83 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALARGELRLIGATT  159 (387)
T ss_dssp             EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHTTCCCEEEEEC
T ss_pred             EeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCC---CcccHHHHHHHHHhCCCcceeeecC
Confidence            999998875  57899999998888765   2 2589999999998654321   1235568999999999999999999


Q ss_pred             ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH
Q 013706          310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE  377 (438)
Q Consensus       310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (438)
                      ++.+.. +..||+|.||| ..|.++.|+.++-..|++.........   ++    ..++++++.....
T Consensus       160 ~~ey~~-~e~d~al~rrF-~~v~v~ep~~~~~~~il~~~~~~~e~~---h~----v~~~~~ai~~~v~  218 (387)
T d1qvra2         160 LDEYRE-IEKDPALERRF-QPVYVDEPTVEETISILRGLKEKYEVH---HG----VRISDSAIIAAAT  218 (387)
T ss_dssp             HHHHHH-HTTCTTTCSCC-CCEEECCCCHHHHHHHHHHHHHHHHHH---TT----CEECHHHHHHHHH
T ss_pred             HHHHHH-hcccHHHHHhc-ccccCCCCcHHHHHHHHHHHHHHHHhc---cC----CcccHHHHHHHHH
Confidence            999976 47899999999 999999999999999998776654321   22    3345555555444

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.7e-18  Score=155.41  Aligned_cols=132  Identities=28%  Similarity=0.338  Sum_probs=117.9

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcC----CHHHHHHHHHCCCCcccccCCCCcH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG----CNEAAKLLLAHGAFIEAKANNGMTP   77 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g----~~~~v~~Ll~~g~~~~~~~~~g~t~   77 (438)
                      ..|.||||+||.+|+.+++++|+++   .+++++..+..|.++++.+...+    ...++++|+++|++++.++..|.||
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~  222 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP  222 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhc---cCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCc
Confidence            4689999999999999999999985   68899999999999888776643    3578999999999999999999999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhC-CCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~-ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~  141 (438)
                      ||+|+    ..++.+++++|++. |++++.+|.+|.||| |.|+..++.+++++|+.+|++.+.+
T Consensus       223 L~~a~----~~~~~~~v~~lL~~~g~din~~d~~G~TpL-~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         223 LILAV----EKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHH----HTTCHHHHHHHHHSSSCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             cchhh----hcCcHHHHHHHHHcCCCCCcCCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            99999    88999999999975 999999999999999 6666788999999999999886543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.74  E-value=5.7e-17  Score=154.92  Aligned_cols=261  Identities=16%  Similarity=0.236  Sum_probs=165.2

Q ss_pred             HHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhcCCCC-CCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706          156 ELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKV-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR  233 (438)
Q Consensus       156 ~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~  233 (438)
                      +....+++ ++||+.+|+.+.-.+.   ..++|....... ..-.|+|+||.||||||||.+||.||+.++.       |
T Consensus         7 ~i~~~Ld~yVvGQ~~AKk~lsvav~---nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~V-------P   76 (443)
T d1g41a_           7 EIVSELDQHIIGQADAKRAVAIALR---NRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P   76 (443)
T ss_dssp             HHHHHHHTTCCSCHHHHHHHHHHHH---HHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------C
T ss_pred             HHHHHhcCcccCcHHHHHHHHHHHH---HHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCC-------C
Confidence            34455554 7899999999886533   223333322222 1235789999999999999999999999877       9


Q ss_pred             EEEeeccccccc-cccc-chHHHHHHH-----------------------------------------------------
Q 013706          234 VTEVQRTDLVGE-FVGH-TGPKTRRRI-----------------------------------------------------  258 (438)
Q Consensus       234 ~~~~~~~~~~~~-~~g~-~~~~~~~~~-----------------------------------------------------  258 (438)
                      |+.++++.+... |+|+ .+..+++++                                                     
T Consensus        77 Fv~~daT~fTeaGYvG~DVesii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~~~~~~~~~~~~~~~~  156 (443)
T d1g41a_          77 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQ  156 (443)
T ss_dssp             EEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------
T ss_pred             EEEeecceeeecceeecchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhH
Confidence            999999887643 4444 111111110                                                     


Q ss_pred             --------------------------------------------------------------------------------
Q 013706          259 --------------------------------------------------------------------------------  258 (438)
Q Consensus       259 --------------------------------------------------------------------------------  258 (438)
                                                                                                      
T Consensus       157 ~~~~~L~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~  236 (443)
T d1g41a_         157 AFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINP  236 (443)
T ss_dssp             --------------------------------------------------------------------CCGGGSCSSCCH
T ss_pred             HHHHHHhcCCccccccccccccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccch
Confidence                                                                                            


Q ss_pred             --------HH-ccCcEEEEeCcccccCCCCCCCchhH-HHHHHHHHhhccCC------------CEEEEEecCChhHHHH
Q 013706          259 --------KE-AEGGILFVDEAYRLIPMQKADDKDYG-IEALEEIMSVMDGG------------KVVVIFAGYSEPMKRV  316 (438)
Q Consensus       259 --------~~-a~~~il~iDEid~l~~~~~~~~~~~~-~~~~~~ll~~~~~~------------~v~vi~~~~~~~~~~~  316 (438)
                              .. ..++++|+||+++........+.+.+ ..+...++..+++.            .+.+|+++...... -
T Consensus       237 ~~i~~~ai~~v~~~~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~-~  315 (443)
T d1g41a_         237 EELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR-P  315 (443)
T ss_dssp             HHHHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC-G
T ss_pred             hHHHHHHHHHHhccCccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcc-c
Confidence                    00 12368999999999887665544443 45567778777653            34566665332211 0


Q ss_pred             hhhCcCccCCCCcceeCCCCCHHHHHHHHH----HHHhccccccccccccccccccHHHHHHHHHHHhhHhh-hcccccc
Q 013706          317 IASNEGFCRRVTKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ-RREMNGG  391 (438)
Q Consensus       317 ~~~~p~l~~R~~~~i~~~~~~~~e~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~n~~  391 (438)
                      ...-|.|..||+.++.+.+++.+++.+||.    ..+++....-..+|  +...++++++..+++....... .....+|
T Consensus       316 ~gliPEliGRlPi~v~L~~L~~~dL~rILtEPknsLikQy~~lf~~~g--v~L~ft~~al~~iA~~A~~~n~~~~~~GAR  393 (443)
T d1g41a_         316 SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG--VNIAFTTDAVKKIAEAAFRVNEKTENIGAR  393 (443)
T ss_dssp             GGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTT--CEEEECHHHHHHHHHHHHHHHHHSCCCGGG
T ss_pred             ccchhhhccceEEEEEccCccHHHHHHHHHhhhhhHHHHHHHHHhhcC--cEEEEcHHHHHHHHHHHHHhhhhcccCCch
Confidence            112589999999999999999999999983    23333221111123  4455688999999887652111 1223479


Q ss_pred             chHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706          392 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL  432 (438)
Q Consensus       392 ~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~  432 (438)
                      .|+.++|+....+...+....   .....|+.+-+.+.++.
T Consensus       394 ~Lr~i~E~~l~~~~f~~p~~~---~~~v~Id~~~v~~~l~~  431 (443)
T d1g41a_         394 RLHTVMERLMDKISFSASDMN---GQTVNIDAAYVADALGE  431 (443)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCT---TCEEEECHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccCCCCC---CCEEEECHHHHHhhhhc
Confidence            999999999888755554221   23356777777776654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.2e-18  Score=140.85  Aligned_cols=120  Identities=28%  Similarity=0.388  Sum_probs=109.5

Q ss_pred             cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706            6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS   85 (438)
Q Consensus         6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   85 (438)
                      +.||.||..|+.++|+.|++.   .+.++|..|..|+||||+|+ .|+.++++.|++++++++..+..|.+|+++++   
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~---~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~---   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHR---ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAA---   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---
T ss_pred             HHHHHHHHcCCHHHHHHHHHh---CCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccc---
Confidence            469999999999999999984   57899999999999999987 48899999999999999999999999999999   


Q ss_pred             cccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           86 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        86 ~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                       ..++.++++.++++|++++.+|.+|+||| +.|+..++.+++++|...
T Consensus        77 -~~~~~~~~~~~l~~~~~~n~~~~~~~t~L-~~A~~~~~~~i~~~L~~~  123 (156)
T d1bd8a_          77 -RTGFLDTLKVLVEHGADVNVPDGTGALPI-HLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             -HTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHHTT
T ss_pred             -ccccccccccccccccccccccCCCCeee-cccccccccccccccccc
Confidence             88999999999999999999999999999 556667888899988743

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.9e-18  Score=163.44  Aligned_cols=86  Identities=44%  Similarity=0.548  Sum_probs=77.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhc
Q 013706            5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWY   84 (438)
Q Consensus         5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   84 (438)
                      -||||+||..|+.++|++|++    .|+++|..|..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+  
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~----~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~--   74 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA--   74 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHH--
T ss_pred             CChHHHHHHCcCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH--
Confidence            399999999999999999999    78999999999999999999999999999999999999999999999999998  


Q ss_pred             ccccCcHHHHHHHH
Q 013706           85 SIRSEDYATVKTLL   98 (438)
Q Consensus        85 ~~~~~~~~~~~~Ll   98 (438)
                        ..|+.+++++|+
T Consensus        75 --~~g~~~~~~~Ll   86 (408)
T d1n11a_          75 --RIGHTNMVKLLL   86 (408)
T ss_dssp             --HHTCHHHHHHHH
T ss_pred             --HcCCHHHHHHHH
Confidence              444444444433

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=2.6e-17  Score=150.33  Aligned_cols=87  Identities=29%  Similarity=0.376  Sum_probs=77.5

Q ss_pred             ccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccc
Q 013706           37 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD  116 (438)
Q Consensus        37 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~  116 (438)
                      .+..|.||||+|+..|+.++++.|++.|+++|.++..|+||||+|+    ..|+.+++++|+++|++++.+|.+|+|||+
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~----~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~  270 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA----HWGKEEACRILVENLCDMEAVNKVGQTAFD  270 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            4567889999999999999999999999999999999999999999    889999999999999999999999999995


Q ss_pred             ccccCCCchhHHHHHH
Q 013706          117 HLSNGPGSAKLRELLL  132 (438)
Q Consensus       117 ~~a~~~~~~~~~~lL~  132 (438)
                      + |..    +++.+|.
T Consensus       271 ~-A~e----~~~~~L~  281 (291)
T d1s70b_         271 V-ADE----DILGYLE  281 (291)
T ss_dssp             S-CCS----GGGHHHH
T ss_pred             H-HHH----HHHHHHH
Confidence            5 443    3555554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.6e-17  Score=148.81  Aligned_cols=101  Identities=35%  Similarity=0.447  Sum_probs=48.4

Q ss_pred             CcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccc-ccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCC
Q 013706           31 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA-KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN  109 (438)
Q Consensus        31 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~  109 (438)
                      +.+++.+|..|+||||+|+..++.+++++|++.+++.+. ++..|.||||+|+    ..++.+++++|+++|++++.+|.
T Consensus       148 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~----~~~~~~~v~~Ll~~gadin~~d~  223 (255)
T d1oy3d_         148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV----EAQAASVLELLLKAGADPTARMY  223 (255)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CcccccccccCcccccccccccccccccchhcccccccccccccccccccccc----cccHHHHHHHHHHCCCCCCCCCC
Confidence            444444444555555555555555555555554444433 2334455555554    44445555555555555555555


Q ss_pred             CCCccccccccCCCchhHHHHHHhccc
Q 013706          110 EGKTPLDHLSNGPGSAKLRELLLWHSE  136 (438)
Q Consensus       110 ~g~t~l~~~a~~~~~~~~~~lL~~~~~  136 (438)
                      +|.||| +.|+..++.+++++|+.+|+
T Consensus       224 ~g~t~L-~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         224 GGRTPL-GSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             TSCCHH-HHHHTSSCHHHHHHHHHTTC
T ss_pred             CCCCHH-HHHHHCCCHHHHHHHHHcCC
Confidence            555555 33333444444555544444

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=8.1e-18  Score=150.68  Aligned_cols=196  Identities=17%  Similarity=0.189  Sum_probs=118.1

Q ss_pred             HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----
Q 013706          159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----  233 (438)
Q Consensus       159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~-----  233 (438)
                      ..|++++|++++++.|..+..               ....++++|||||||||||++|+++|+.+..........     
T Consensus         8 ~~~~diig~~~~~~~L~~~~~---------------~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~   72 (252)
T d1sxje2           8 KSLNALSHNEELTNFLKSLSD---------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF   72 (252)
T ss_dssp             CSGGGCCSCHHHHHHHHTTTT---------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred             CCHHHccCcHHHHHHHHHHHH---------------cCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccc
Confidence            368999999999888876522               123456899999999999999999999873222110000     


Q ss_pred             ------EEEeecc------cccccccccchHH-HHHHHH-----------------HccCcEEEEeCcccccCCCCCCCc
Q 013706          234 ------VTEVQRT------DLVGEFVGHTGPK-TRRRIK-----------------EAEGGILFVDEAYRLIPMQKADDK  283 (438)
Q Consensus       234 ------~~~~~~~------~~~~~~~g~~~~~-~~~~~~-----------------~a~~~il~iDEid~l~~~~~~~~~  283 (438)
                            ...+...      .......+..... ....+.                 .....+++|||+|.+....     
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~-----  147 (252)
T d1sxje2          73 VTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA-----  147 (252)
T ss_dssp             ----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHH-----
T ss_pred             cccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEecccccccccc-----
Confidence                  0000000      0000011111111 111111                 1122599999999986533     


Q ss_pred             hhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccc
Q 013706          284 DYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF  361 (438)
Q Consensus       284 ~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~  361 (438)
                            .+.|+..++.  ..+++|++++...  .+   .|++++|| ..|+|++|+.+++.+++...+.++.       +
T Consensus       148 ------~~~l~~~~e~~~~~~~~Il~tn~~~--~i---~~~l~sR~-~~i~~~~~~~~~~~~~l~~i~~~e~-------~  208 (252)
T d1sxje2         148 ------QAALRRTMEKYSKNIRLIMVCDSMS--PI---IAPIKSQC-LLIRCPAPSDSEISTILSDVVTNER-------I  208 (252)
T ss_dssp             ------HHHHHHHHHHSTTTEEEEEEESCSC--SS---CHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-------C
T ss_pred             ------chhhhcccccccccccceeeecccc--ch---hhhhhcch-heeeecccchhhHHHHHHHHHHHcC-------C
Confidence                  3666666664  4555666554322  12   78889998 7999999999999999998887642       3


Q ss_pred             cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706          362 KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN  403 (438)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~  403 (438)
                      .+.   +++++..++...       .|+.|.+.+.++.+...
T Consensus       209 ~~~---~~~~l~~i~~~s-------~Gd~R~ai~~Lq~~~~~  240 (252)
T d1sxje2         209 QLE---TKDILKRIAQAS-------NGNLRVSLLMLESMALN  240 (252)
T ss_dssp             EEC---CSHHHHHHHHHH-------TTCHHHHHHHHTHHHHT
T ss_pred             CCC---cHHHHHHHHHHc-------CCcHHHHHHHHHHHHHc
Confidence            322   346666666654       46667666777765543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2.9e-17  Score=128.77  Aligned_cols=95  Identities=25%  Similarity=0.300  Sum_probs=87.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccC
Q 013706           42 ETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG  121 (438)
Q Consensus        42 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~  121 (438)
                      .|||++|+..|+.++++.|+++|++++.+|..|+||||+|+    ..++.+++++|+++|++++.+|.+|+||| |.|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~----~~~~~~~~~~ll~~g~din~~d~~g~tpL-h~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA----DCGQLEILEFLLLKGADINAPDKHHITPL-LSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHH----HHSTTTHHHHHHHSSCTTTCCSSSCSCHH-HHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccc----cccccccccccccccceeeecccccccch-hhhhh
Confidence            48999999999999999999999999999999999999999    78999999999999999999999999999 56666


Q ss_pred             CCchhHHHHHHhccchHHHH
Q 013706          122 PGSAKLRELLLWHSEEQRKR  141 (438)
Q Consensus       122 ~~~~~~~~lL~~~~~~~~~~  141 (438)
                      .++.+++++|+..|++...+
T Consensus        78 ~~~~~~v~~Ll~~Gad~~~~   97 (118)
T d1myoa_          78 EGHVSCVKLLLSKGADKTVK   97 (118)
T ss_dssp             TTCCHHHHHHHTTCCCSSSS
T ss_pred             cCchhhhhhhhcccccceee
Confidence            78899999999988775443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.4e-17  Score=130.71  Aligned_cols=89  Identities=20%  Similarity=0.272  Sum_probs=82.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCC-hHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE-TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   80 (438)
                      ..|+||||+|+ .|+.+++++|++    .|++++.++..+. ||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        34 ~~g~t~l~~a~-~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~  108 (125)
T d1bi7b_          34 SYGRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL  108 (125)
T ss_dssp             SSSCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH
T ss_pred             ccccccccccc-cccccccccccc----cccccccccccccccccccccccccccccccccccccccccccCCCCCHHHH
Confidence            47899999765 799999999999    7889999998876 69999999999999999999999999999999999999


Q ss_pred             HhhcccccCcHHHHHHHHh
Q 013706           81 SVWYSIRSEDYATVKTLLE   99 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~   99 (438)
                      |+    ..|+.+++++|+.
T Consensus       109 A~----~~g~~~~v~~Lls  123 (125)
T d1bi7b_         109 AE----ELGHRDVARYLRA  123 (125)
T ss_dssp             HH----HHTCHHHHHHHSS
T ss_pred             HH----HcCCHHHHHHHHh
Confidence            99    8899999999874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=5.1e-16  Score=127.42  Aligned_cols=92  Identities=23%  Similarity=0.344  Sum_probs=80.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCC-----------------------------CCcccccccCCCChHHHHHHHcC
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGN-----------------------------DKVELEAQNMYGETPLHMAAKNG   52 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~-----------------------------~~~~~~~~d~~g~t~L~~A~~~g   52 (438)
                      ..|+||||+|+..++.+++..++.....                             .+.+.+.+|..|+||||+|+..|
T Consensus        32 ~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g  111 (153)
T d1awcb_          32 WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN  111 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcc
Confidence            3688888888888888887776653211                             56778889999999999999999


Q ss_pred             CHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHH
Q 013706           53 CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL   97 (438)
Q Consensus        53 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~L   97 (438)
                      +.+++++|+++|++++.+|.+|.||||+|+    .+|+.+++++|
T Consensus       112 ~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~----~~g~~eiv~lL  152 (153)
T d1awcb_         112 HQEVVELLIKYGADVHTQSKFCKTAFDISI----DNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHH
T ss_pred             hhheeeeccccccCCcccCCCCCCHHHHHH----HcCCHHHHHhC
Confidence            999999999999999999999999999999    89999999876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.64  E-value=1.1e-17  Score=151.48  Aligned_cols=119  Identities=21%  Similarity=0.264  Sum_probs=96.6

Q ss_pred             CcHHHHHHH-cCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHH--------HHCCCCcccccCCC
Q 013706            5 QTPLHVSAG-YNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLL--------LAHGAFIEAKANNG   74 (438)
Q Consensus         5 ~tpLh~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~~~~g   74 (438)
                      +||||+|+. .|+..+++.|.+    .+  +|..+ .+|+||||+||..|+.+++++|        ++.|+|+|.+|.+|
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~----~~--~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G   74 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITR----ES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE   74 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCST----TT--TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS
T ss_pred             CChHHHHHHhCCCHHHHHHHHh----cC--CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCC
Confidence            589996665 467677666665    34  44444 4699999999999998887665        67799999999999


Q ss_pred             CcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706           75 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH  134 (438)
Q Consensus        75 ~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~  134 (438)
                      +||||+|+    ..|+.+++++|+++|++++..|.+|.||+ +.+...+...+...+...
T Consensus        75 ~TpLh~A~----~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l-~~a~~~~~~~~~~~l~~~  129 (277)
T d2fo1e1          75 NTPLMLAV----LARRRRLVAYLMKAGADPTIYNKSERSAL-HQAAANRDFGMMVYMLNS  129 (277)
T ss_dssp             CCHHHHHH----HHTCHHHHHHHHHTTCCSCCCCTTCCCHH-HHHHHTTCHHHHHHHTTS
T ss_pred             Ceeecccc----ccccccccccccccccccccccccccccc-cchhhhcchhhhhhhhhc
Confidence            99999999    88999999999999999999999999999 555556676777666543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.2e-16  Score=127.45  Aligned_cols=93  Identities=19%  Similarity=0.240  Sum_probs=86.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCC
Q 013706           43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP  122 (438)
Q Consensus        43 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~  122 (438)
                      ++||.||..|+.++++.|+++|+|+|.+|.+|+||||+|+    ..++.+++++|+++|++++..|.+|+||| |.|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~----~~~~~~~~~~ll~~g~~~~~~d~~g~tpL-h~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV----CAGHTEIVKFLVQFGVNVNAADSDGWTPL-HCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH----HHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccc----ccccccccccccccccccccccccCcccc-cccchh
Confidence            6799999999999999999999999999999999999999    88999999999999999999999999999 566668


Q ss_pred             CchhHHHHHHhccchHHH
Q 013706          123 GSAKLRELLLWHSEEQRK  140 (438)
Q Consensus       123 ~~~~~~~lL~~~~~~~~~  140 (438)
                      ++.+++++|+..|++...
T Consensus        78 g~~~~v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          78 NNVQVCKFLVESGAAVFA   95 (130)
T ss_dssp             TCHHHHHHHHHTTCCTTC
T ss_pred             hHHHHHHHHHHcCCCccc
Confidence            899999999998877553

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.62  E-value=5.6e-16  Score=144.27  Aligned_cols=156  Identities=21%  Similarity=0.256  Sum_probs=99.3

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC---------
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP---------  230 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~---------  230 (438)
                      .|.+|+|++.+|..+.-..  +              .....|+||+||||||||++||+++..|.......         
T Consensus         5 ~f~~I~Gq~~~kral~laa--~--------------~~~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~   68 (333)
T d1g8pa_           5 PFSAIVGQEDMKLALLLTA--V--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV   68 (333)
T ss_dssp             CGGGSCSCHHHHHHHHHHH--H--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred             ChhhccCcHHHHHHHHHHH--h--------------ccCCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCcc
Confidence            4789999999988765321  1              01234899999999999999999998762100000         


Q ss_pred             -----------------CCCEEEeecccccccccccch----------HHHHHHHHHccCcEEEEeCcccccCCCCCCCc
Q 013706          231 -----------------TDRVTEVQRTDLVGEFVGHTG----------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDK  283 (438)
Q Consensus       231 -----------------~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~  283 (438)
                                       ..+++........+..+|...          ......+..|.+||+||||++.+.+       
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~-------  141 (333)
T d1g8pa_          69 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED-------  141 (333)
T ss_dssp             GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-------
T ss_pred             ccccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHH-------
Confidence                             011222221111222233210          0111356778899999999998876       


Q ss_pred             hhHHHHHHHHHhhccCC---------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCC-HHHHHHHHH
Q 013706          284 DYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILH  346 (438)
Q Consensus       284 ~~~~~~~~~ll~~~~~~---------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~-~~e~~~il~  346 (438)
                          ++++.|++.|+++               .+.+++++|+.+- .   ..+++++||+..+.++.|. .+++.+++.
T Consensus       142 ----~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~-~---l~~~llDRf~~~i~v~~~~~~~~~~~~~~  212 (333)
T d1g8pa_         142 ----HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG-D---LRPQLLDRFGLSVEVLSPRDVETRVEVIR  212 (333)
T ss_dssp             ----HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC-C---CCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred             ----HHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCcccc-c---cccchhhhhcceeeccCcchhhHHHHHHH
Confidence                6679999999864               2466666665442 2   3788999999999998775 455555554

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=8.2e-16  Score=132.99  Aligned_cols=88  Identities=32%  Similarity=0.340  Sum_probs=84.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+..++..+++.+++    .+.+++..|..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|
T Consensus       121 ~~~~t~l~~~~~~~~~~~~~~l~~----~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A  196 (209)
T d1ot8a_         121 NSGKTALHWAAAVNNTEAVNILLM----HHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVA  196 (209)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCcchhhcccCcceeeeeecc----ccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            468999999999999999999999    6788999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHH
Q 013706           82 VWYSIRSEDYATVKTL   97 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~L   97 (438)
                      +    ..|+.+++++|
T Consensus       197 ~----~~~~~~iv~lL  208 (209)
T d1ot8a_         197 S----ERLHHDIVRLL  208 (209)
T ss_dssp             H----HTTCHHHHHHH
T ss_pred             H----HcCCHHHHhhc
Confidence            9    89999999976

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=5.1e-15  Score=127.54  Aligned_cols=130  Identities=12%  Similarity=0.101  Sum_probs=86.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC-----------------CEEEeecccccccccccchHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKE  260 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~  260 (438)
                      .|..+||+||||+|||++|+.+|+.+.........                 .+..+....- ...+  .-..++++.+.
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~i--~~~~ir~l~~~   99 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KNTL--GVDAVREVTEK   99 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CSSB--CHHHHHHHHHH
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhc-cccc--ccchhhHHhhh
Confidence            34459999999999999999999988532211111                 1111111100 0000  12345555554


Q ss_pred             c-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcce
Q 013706          261 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF  331 (438)
Q Consensus       261 a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i  331 (438)
                      .       ...|++|||+|.+..           .+.+.|+..|++  ..+.+|++++...  .+   .|++++|+ ..+
T Consensus       100 ~~~~~~~~~~kviIide~d~l~~-----------~a~n~Llk~lEep~~~~~fIl~t~~~~--~l---l~tI~SRc-~~i  162 (207)
T d1a5ta2         100 LNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEPPAETWFFLATREPE--RL---LATLRSRC-RLH  162 (207)
T ss_dssp             TTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSCCTTEEEEEEESCGG--GS---CHHHHTTS-EEE
T ss_pred             hhhccccCccceEEechhhhhhh-----------hhhHHHHHHHHhhcccceeeeeecChh--hh---hhhhccee-EEE
Confidence            3       236999999999987           445999999997  5667676654432  22   78899998 999


Q ss_pred             eCCCCCHHHHHHHHHH
Q 013706          332 HFNDFNSEELAKILHI  347 (438)
Q Consensus       332 ~~~~~~~~e~~~il~~  347 (438)
                      .|++|+.++...+++.
T Consensus       163 ~~~~~~~~~~~~~L~~  178 (207)
T d1a5ta2         163 YLAPPPEQYAVTWLSR  178 (207)
T ss_dssp             ECCCCCHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHH
Confidence            9999999998888753

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-14  Score=130.74  Aligned_cols=99  Identities=21%  Similarity=0.215  Sum_probs=88.4

Q ss_pred             CCCcHHHHHHHc----CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCcH
Q 013706            3 MAQTPLHVSAGY----NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTP   77 (438)
Q Consensus         3 ~g~tpLh~A~~~----g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~   77 (438)
                      .|.++++.+...    +...++++|++    .|++++.+|..|.||||+|+..|+.+++++|++ .|+++|.+|.+|.||
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~i~~~Li~----~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~Tp  256 (285)
T d1wdya_         181 MGRNALIHALLSSDDSDVEAITHLLLD----HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA  256 (285)
T ss_dssp             TSCCHHHHHHHCSCTTTHHHHHHHHHH----TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCH
T ss_pred             CCCcccccccccccchHHHHHHHHHHH----CCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCH
Confidence            466777766543    34579999999    788999999999999999999999999999997 599999999999999


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcccCC
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDN  109 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~  109 (438)
                      ||+|+    ..++.+++++|+++||++|.+|.
T Consensus       257 L~~A~----~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         257 LLLAV----ELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHH----HTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHH----HcCCHHHHHHHHHCCCCCCcccC
Confidence            99999    88999999999999999999874

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.52  E-value=2.7e-16  Score=147.28  Aligned_cols=98  Identities=13%  Similarity=0.028  Sum_probs=85.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc--CCCChHHHHHHHcCCHHHHHHHHHCCCCc---ccccCCCCcH
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--MYGETPLHMAAKNGCNEAAKLLLAHGAFI---EAKANNGMTP   77 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~   77 (438)
                      .|+||||+||.+||.++|++|++    .|++++..+  ..|+||||+||..||.+++++|++.|++.   +..+..+.||
T Consensus       125 ~g~taL~~Aa~~G~~~~v~~Ll~----~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~  200 (346)
T d2ajaa1         125 ENYQAFRLAAENGHLHVLNRLCE----LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF  200 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH----SCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHH----cCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcch
Confidence            47899999999999999999999    688888776  45999999999999999999999999865   3445567788


Q ss_pred             HHHHhhcccccCcHHHHHHHHhCCCCCcccC
Q 013706           78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKD  108 (438)
Q Consensus        78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d  108 (438)
                      +|.|+    .+|+.+++++|++.|++++..+
T Consensus       201 l~~A~----~~g~~~iv~~Ll~~ga~~~~~~  227 (346)
T d2ajaa1         201 RWAAV----GRGHHNVINFLLDCPVMLAYAE  227 (346)
T ss_dssp             HHHHS----TTCCHHHHHHHTTSHHHHHHHH
T ss_pred             hhHHh----hcCHHHHHHHHHhCCCCcchHH
Confidence            88888    8899999999999998876544

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.52  E-value=3.9e-14  Score=131.60  Aligned_cols=167  Identities=14%  Similarity=0.070  Sum_probs=101.0

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccc-cccchHHHHHHHHHccCcEEEEeCccccc
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF-VGHTGPKTRRRIKEAEGGILFVDEAYRLI  275 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~a~~~il~iDEid~l~  275 (438)
                      +..+++|||||||||||++|+++|+.++.       +++++++++..+.+ +|..          ....+.++|+++...
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~-------~~i~in~s~~rs~~~l~~~----------~~~~~~l~d~~~~~~  214 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGG-------KALNVNLPLDRLNFELGVA----------IDQFLVVFEDVKGTG  214 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCC-------EEECCSSCTTTHHHHHGGG----------TTCSCEEETTCCCST
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCC-------CEEEEECcchhhHHHHHhH----------HHHHHHHHHHHHHhh
Confidence            34568999999999999999999999976       88999888765542 3322          234556667766665


Q ss_pred             CCCCCCCchhHHHHHHHHHhhccCCC-----------E-----EEEEecCChhHHHHhhhCcCcc--CCCCcceeCCCCC
Q 013706          276 PMQKADDKDYGIEALEEIMSVMDGGK-----------V-----VVIFAGYSEPMKRVIASNEGFC--RRVTKFFHFNDFN  337 (438)
Q Consensus       276 ~~~~~~~~~~~~~~~~~ll~~~~~~~-----------v-----~vi~~~~~~~~~~~~~~~p~l~--~R~~~~i~~~~~~  337 (438)
                      ..+...+.-....-++.|...++++.           +     .+|+||+.  .      ++++.  .||+..+.+.+|.
T Consensus       215 ~~~~~~~~~~~~DeiD~l~~~~dg~~~~~~~~~~~~~~~~~~~p~i~ttN~--~------~~~~~r~~Rf~~~i~~~~~~  286 (362)
T d1svma_         215 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE--Y------SVPKTLQARFVKQIDFRPKD  286 (362)
T ss_dssp             TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECS--C------CCCHHHHTTEEEEEECCCCH
T ss_pred             hhccCCCCeEEEehHhhcccccCCcchhhhhhhhhchhhhccCCceeeccc--c------cccccccccCceEEeecCCC
Confidence            54443333333333455555554420           1     25555542  1      22222  3999999888777


Q ss_pred             HHHH-HHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccc
Q 013706          338 SEEL-AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL  408 (438)
Q Consensus       338 ~~e~-~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~  408 (438)
                      ...+ .+++...+.+..           .....+.+..++.+..         +++++++++.+...+..|+
T Consensus       287 ~~~~~~~~l~~i~~~~~-----------l~~~~~~L~~li~~~s---------~~D~~~~i~~~~~~~~~~l  338 (362)
T d1svma_         287 YLKHCLERSEFLLEKRI-----------IQSGIALLLMLIWYRP---------VAEFAQSIQSRIVEWKERL  338 (362)
T ss_dssp             HHHHHHHTCTHHHHTTC-----------TTCHHHHHHHHHHHSC---------GGGSCGGGHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcccC-----------CCCCHHHHHHHccCCC---------HHHHHHHHHHHHHHHHHHH
Confidence            6554 455555555432           2345677777777665         3455566665555544443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-14  Score=125.55  Aligned_cols=94  Identities=23%  Similarity=0.261  Sum_probs=85.7

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL   80 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   80 (438)
                      ..|.||||.|+..++.+++++|+.    .+..++..+ .+|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+
T Consensus       109 ~~~~t~l~~a~~~~~~~~~~~l~~----~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~  184 (221)
T d1iknd_         109 YNGHTCLHLASIHGYLGIVELLVS----LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL  184 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGG
T ss_pred             cccchhhhHHhhcCChhheeeecc----cCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHH
Confidence            368899999999999999999998    577777765 569999999999999999999999999999999999999999


Q ss_pred             HhhcccccCcHHHHHHHHhCCCC
Q 013706           81 SVWYSIRSEDYATVKTLLEYNAD  103 (438)
Q Consensus        81 A~~~~~~~~~~~~~~~Ll~~ga~  103 (438)
                      |+    ..++.+++++|++.+.+
T Consensus       185 A~----~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         185 TW----GRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CT----TSSCHHHHHHHHTTSCG
T ss_pred             HH----HCCCHHHHHHHHHcCCc
Confidence            99    88999999999987655

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.45  E-value=7.3e-13  Score=114.07  Aligned_cols=170  Identities=16%  Similarity=0.148  Sum_probs=107.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchH-HHHHHHHHc-cCcEEEEeCcccccCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP-KTRRRIKEA-EGGILFVDEAYRLIPM  277 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~a-~~~il~iDEid~l~~~  277 (438)
                      .+++||||||||||.++.++++++...+.    .++.++..++...+...... .....++.- ...+|+||++|.+..+
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~~  112 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGY----RVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK  112 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTC----CEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccCcc----ceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcCc
Confidence            45899999999999999999999876443    55666666655443221111 111222222 3489999999999753


Q ss_pred             CCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706          278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED  355 (438)
Q Consensus       278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~  355 (438)
                      ..     ......+.+-..++.+..+++.++.+......  ..|.|++|+  ..++.++ |+.+++.+++++++.+.   
T Consensus       113 ~~-----~~~~lf~lin~~~~~~~~iiits~~~p~~l~~--~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~r---  181 (213)
T d1l8qa2         113 ER-----TQIEFFHIFNTLYLLEKQIILASDRHPQKLDG--VSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEF---  181 (213)
T ss_dssp             HH-----HHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT--SCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHT---
T ss_pred             hH-----HHHHHHHHHHHHhhccceEEEecCCcchhccc--cchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHc---
Confidence            21     12223333334445566666655443322111  267788888  5677786 67789999999998764   


Q ss_pred             cccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHH
Q 013706          356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA  400 (438)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a  400 (438)
                          |    ..++++++..++++.        .|.|++..++...
T Consensus       182 ----g----l~l~~~v~~yl~~~~--------~~~R~L~~~l~~l  210 (213)
T d1l8qa2         182 ----N----LELRKEVIDYLLENT--------KNVREIEGKIKLI  210 (213)
T ss_dssp             ----T----CCCCHHHHHHHHHHC--------SSHHHHHHHHHHH
T ss_pred             ----C----CCCCHHHHHHHHHhc--------CcHHHHHHHHHHh
Confidence                2    346778888887752        3467777776543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=3.2e-14  Score=130.33  Aligned_cols=54  Identities=28%  Similarity=0.259  Sum_probs=50.3

Q ss_pred             CCcccccc-cCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706           30 DKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW   83 (438)
Q Consensus        30 ~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   83 (438)
                      .+.++|.. |..|+||||+||..|+.+++++|+++|++++.+|..|+||||.||.
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~  149 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK  149 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHH
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhh
Confidence            46778865 8999999999999999999999999999999999999999999994

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.2e-13  Score=109.37  Aligned_cols=124  Identities=23%  Similarity=0.338  Sum_probs=114.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706            2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS   81 (438)
Q Consensus         2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   81 (438)
                      ..|+||||+|+ .|+.+++++|++    .+++++..+..|.+||+.++..++..+++.|+..+.+++..+..|.+|||+|
T Consensus        32 ~~g~TpL~~A~-~~~~ei~~~Ll~----~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a  106 (156)
T d1ihba_          32 GFGRTALQVMK-LGNPEIARRLLL----RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA  106 (156)
T ss_dssp             TTSCCHHHHCC-SSCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             Ccccccccccc-cccccccccccc----cccccccccccCcccccccccccccccccccccccccccccccccccccccc
Confidence            47999999886 789999999999    7889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCcHHHHHHHHhCCC-CCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706           82 VWYSIRSEDYATVKTLLEYNA-DCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS  135 (438)
Q Consensus        82 ~~~~~~~~~~~~~~~Ll~~ga-~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~  135 (438)
                      +    ..++.+++++|+++++ +++.+|.+|.||| +.|+..++.+++++|+.+|
T Consensus       107 ~----~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL-~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         107 A----KEGHLRVVEFLVKHTASNVGHRNHKGDTAC-DLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             H----HTTCHHHHHHHHHHSCCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTC
T ss_pred             c----ccccccccccccccccccccccCCCCCCHH-HHHHHcCCHHHHHHHHhcC
Confidence            9    8899999999998875 8899999999999 6666678999999998765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.9e-14  Score=120.06  Aligned_cols=118  Identities=29%  Similarity=0.317  Sum_probs=102.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706            3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV   82 (438)
Q Consensus         3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   82 (438)
                      ...+|||.+...........|...   ........+..+.+||+.|+..+...+++.+++.|.+++.+|..|.||||+|+
T Consensus       109 ~~~~~l~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~  185 (228)
T d1k1aa_         109 DGLTALHVAVNTECQETVQLLLER---GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS  185 (228)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             ccccccccccccccchhhhhhhcc---ccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHH
Confidence            567899999999999999999874   22233445668999999999999999999999999999999999999999999


Q ss_pred             hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHH
Q 013706           83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR  128 (438)
Q Consensus        83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~  128 (438)
                          ..|+.+++++|+++|++++.+|.+|+||| +.|...++.+++
T Consensus       186 ----~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL-~~A~~~~~~div  226 (228)
T d1k1aa_         186 ----GRGLLPLVRTLVRSGADSSLKNCHNDTPL-MVARSRRVIDIL  226 (228)
T ss_dssp             ----HHTCHHHHHHHHHTTCCTTCCCTTSCCTT-TTCSSHHHHHHH
T ss_pred             ----HcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHhCCCcccc
Confidence                88999999999999999999999999999 555556665554

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=1.5e-11  Score=104.28  Aligned_cols=129  Identities=12%  Similarity=0.039  Sum_probs=86.3

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEe
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVD  269 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iD  269 (438)
                      ..+.++||+||||+|||++|+.+++.+.... .....++.+.+..   +-+  .-..++++.+.+       ...|++||
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~-~~h~D~~~i~~~~---~~I--~Id~IR~i~~~~~~~~~~~~~KviIId   86 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYVEKFP-PKASDVLEIDPEG---ENI--GIDDIRTIKDFLNYSPELYTRKYVIVH   86 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHHHTSC-CCTTTEEEECCSS---SCB--CHHHHHHHHHHHTSCCSSSSSEEEEET
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHhccc-cCCCCEEEEeCCc---CCC--CHHHHHHHHHHHhhCcccCCCEEEEEe
Confidence            3577999999999999999999999875422 2223466666531   111  223556655553       22599999


Q ss_pred             CcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHH
Q 013706          270 EAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI  347 (438)
Q Consensus       270 Eid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~  347 (438)
                      |+|.|...           +.|+||..|++  +..++|++|+....  +   .|++++|+ ..+.|+.|+.  ...++..
T Consensus        87 ~ad~l~~~-----------aqNaLLK~LEEPp~~t~fiLit~~~~~--l---l~TI~SRC-~~i~~~~p~~--~~~~~~~  147 (198)
T d2gnoa2          87 DCERMTQQ-----------AANAFLKALEEPPEYAVIVLNTRRWHY--L---LPTIKSRV-FRVVVNVPKE--FRDLVKE  147 (198)
T ss_dssp             TGGGBCHH-----------HHHHTHHHHHSCCTTEEEEEEESCGGG--S---CHHHHTTS-EEEECCCCHH--HHHHHHH
T ss_pred             Cccccchh-----------hhhHHHHHHhCCCCCceeeeccCChhh--C---HHHHhcce-EEEeCCCchH--HHHHHHH
Confidence            99999874           44999999996  45555555443322  2   79999998 8899987753  3344444


Q ss_pred             HHh
Q 013706          348 KMN  350 (438)
Q Consensus       348 ~l~  350 (438)
                      .+.
T Consensus       148 ~~~  150 (198)
T d2gnoa2         148 KIG  150 (198)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            433

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.01  E-value=7.7e-09  Score=92.30  Aligned_cols=157  Identities=16%  Similarity=0.195  Sum_probs=89.2

Q ss_pred             HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706          161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT  240 (438)
Q Consensus       161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  240 (438)
                      .++++|.+...+++.+.                    ....++++||+|+|||++++.+++.+..       .+..++..
T Consensus        11 ~~~f~GR~~el~~l~~~--------------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~-------~~~~i~~~   63 (283)
T d2fnaa2          11 RKDFFDREKEIEKLKGL--------------------RAPITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLR   63 (283)
T ss_dssp             GGGSCCCHHHHHHHHHT--------------------CSSEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGG
T ss_pred             hhhCCChHHHHHHHHhc--------------------cCCEEEEEcCCCCcHHHHHHHHHHHCCC-------CeEEEEec
Confidence            46788998766665431                    3467999999999999999999887743       22222221


Q ss_pred             ccccc----------------------------------------------ccccchHHHHH---HHHHc--cCcEEEEe
Q 013706          241 DLVGE----------------------------------------------FVGHTGPKTRR---RIKEA--EGGILFVD  269 (438)
Q Consensus       241 ~~~~~----------------------------------------------~~g~~~~~~~~---~~~~a--~~~il~iD  269 (438)
                      .....                                              ........+..   .+...  ++.++++|
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id  143 (283)
T d2fnaa2          64 KFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLD  143 (283)
T ss_dssp             GGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEE
T ss_pred             cccccccccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccc
Confidence            11000                                              00000111112   22222  34789999


Q ss_pred             CcccccCCCCCCCchhHHHHHHHHHhhcc-CCCEEEEEecCChhH-HHHhhh---CcCccCCCCcceeCCCCCHHHHHHH
Q 013706          270 EAYRLIPMQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGYSEPM-KRVIAS---NEGFCRRVTKFFHFNDFNSEELAKI  344 (438)
Q Consensus       270 Eid~l~~~~~~~~~~~~~~~~~~ll~~~~-~~~v~vi~~~~~~~~-~~~~~~---~p~l~~R~~~~i~~~~~~~~e~~~i  344 (438)
                      |++.+......       .....+...++ ...+..++++..... ..+...   ...+..|+...+.+++++.++..++
T Consensus       144 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~  216 (283)
T d2fnaa2         144 EAQELVKLRGV-------NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF  216 (283)
T ss_dssp             TGGGGGGCTTC-------CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred             hhhhhcccchH-------HHHHHHHHHHHhhhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHH
Confidence            99998764331       12233333332 244555555444333 223211   2234456668899999999999999


Q ss_pred             HHHHHhc
Q 013706          345 LHIKMNN  351 (438)
Q Consensus       345 l~~~l~~  351 (438)
                      +...+..
T Consensus       217 l~~~~~~  223 (283)
T d2fnaa2         217 LRRGFQE  223 (283)
T ss_dssp             HHHHHHH
T ss_pred             HHhhhhh
Confidence            9888765

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.74  E-value=1.7e-09  Score=96.58  Aligned_cols=42  Identities=19%  Similarity=0.262  Sum_probs=36.0

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG  244 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~  244 (438)
                      ...|.++||+||||||||++|++||.+++.       +++.++++++..
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~-------~~~~i~~d~~~~   70 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQG-------NVIVIDNDTFKQ   70 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTT-------CCEEECTHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhc-------ceEEEecHHHHH
Confidence            456889999999999999999999999876       788888877654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.61  E-value=4.2e-08  Score=81.22  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=22.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++++.||||+||||+++.++..+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            5899999999999999999998853

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.06  E-value=3.5e-05  Score=67.91  Aligned_cols=48  Identities=15%  Similarity=0.005  Sum_probs=33.2

Q ss_pred             hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHH
Q 013706          162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      ..+.|.+.-.+.|.+.+....             ......+.++|++|+|||++|+.+.+.
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~~-------------~~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEMC-------------DLDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHT-------------TSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceeCcHHHHHHHHHHHHhcc-------------CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            346788877777766543221             112335679999999999999999875

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.1e-06  Score=71.11  Aligned_cols=26  Identities=31%  Similarity=0.554  Sum_probs=23.9

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++|+|.|||||||||+|+.||+.++.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            57999999999999999999998865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.01  E-value=6.2e-07  Score=74.32  Aligned_cols=38  Identities=16%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  242 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~  242 (438)
                      -++.|+|.|||||||||+|++||+.++.       +++......+
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~~~~-------~~i~~~~~~~   43 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAVFNT-------TSAWEYGREF   43 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHHTTC-------EEECCTTHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHhCC-------CeEeeehHHH
Confidence            3578999999999999999999998764       5555444433

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=98.00  E-value=3.8e-06  Score=68.90  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=23.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..-++|+|||+||||++|.+|.+.++
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHhC
Confidence            34588999999999999999999874

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.96  E-value=1.4e-06  Score=71.02  Aligned_cols=27  Identities=30%  Similarity=0.528  Sum_probs=24.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      -+.++|.||||+||||+|+.||+.++.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~   30 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGL   30 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCC
Confidence            357999999999999999999998864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.89  E-value=2.8e-06  Score=68.96  Aligned_cols=26  Identities=35%  Similarity=0.704  Sum_probs=23.8

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +.++|.|+||+||||+++.+|+.++.
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46888899999999999999999976

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.89  E-value=2.6e-06  Score=68.93  Aligned_cols=26  Identities=35%  Similarity=0.618  Sum_probs=24.0

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++++|.||||+|||++++.+|+.++.
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46899999999999999999999976

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.87  E-value=1.9e-06  Score=71.80  Aligned_cols=28  Identities=18%  Similarity=0.383  Sum_probs=24.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .|..++|.||||+||||+|+.|++.++.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~   29 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQL   29 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCC
Confidence            3678999999999999999999998843

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=5.2e-06  Score=68.32  Aligned_cols=29  Identities=31%  Similarity=0.539  Sum_probs=25.9

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      ++|+|+||||||||++++.++..+...+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~   30 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGV   30 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence            68999999999999999999999976553

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.83  E-value=4e-06  Score=68.38  Aligned_cols=28  Identities=32%  Similarity=0.507  Sum_probs=24.5

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +.+.+|+|.||||+||||+|+.|++.+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            3566799999999999999999999764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.79  E-value=4.7e-06  Score=67.93  Aligned_cols=26  Identities=35%  Similarity=0.441  Sum_probs=23.9

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+++|.||||+||||+|+.+|+.++.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46889999999999999999999976

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.71  E-value=1e-05  Score=66.26  Aligned_cols=29  Identities=28%  Similarity=0.253  Sum_probs=24.8

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      .-|+|.|+||+||||+|++||+.|...++
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~L~~~~~   35 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVTLNQQGG   35 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence            44778999999999999999999976443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.71  E-value=4.3e-06  Score=68.31  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=28.0

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      .-++|.||||+||||+|+.+++.++.       +++.++...
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg~-------~~~~~~~d~   39 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPGV-------PKVHFHSDD   39 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSS-------CEEEECTTH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEecHHH
Confidence            45789999999999999999987654       666666543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=8.8e-06  Score=66.10  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=23.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++-++|.||||+||||+|+.|++.++.
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~~   32 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLHA   32 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            344778999999999999999998864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.67  E-value=1.1e-05  Score=65.73  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=23.7

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .+-|+|.||||+||||+|+.|++.++.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~   29 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            356889999999999999999998754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.66  E-value=8.5e-06  Score=66.23  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=21.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      -++|.||||+||||+|+.|++.+.
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.58  E-value=2e-05  Score=65.30  Aligned_cols=27  Identities=30%  Similarity=0.450  Sum_probs=23.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ...++|.||||+||||+|+.||+.++.
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~g~   29 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNFCV   29 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456889999999999999999998743

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.58  E-value=1.6e-05  Score=66.07  Aligned_cols=27  Identities=30%  Similarity=0.438  Sum_probs=24.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .|.-|++.||||+||||+|+.||+.++
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            456788999999999999999999874

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=0.00011  Score=67.05  Aligned_cols=25  Identities=36%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +-+++.||||||||+++..+...+.
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l~  188 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAALI  188 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHHHHHHH
Confidence            4688999999999988766655553

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.57  E-value=0.0001  Score=63.31  Aligned_cols=104  Identities=11%  Similarity=0.044  Sum_probs=58.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc-------------------------------cc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-------------------------------EF  246 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~  246 (438)
                      +..-++++||||+|||+++..++......+.    +++.++...-..                               ..
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~----~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKE----RAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAG  100 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTC----CEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcc----ccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhh
Confidence            4556899999999999999999887643221    333333221000                               00


Q ss_pred             cccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEec
Q 013706          247 VGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG  308 (438)
Q Consensus       247 ~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~  308 (438)
                      ..+....+...++.....+++||-++.+.....   .......+..|........+.+++++
T Consensus       101 ~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~i~~~  159 (242)
T d1tf7a2         101 LEDHLQIIKSEINDFKPARIAIDSLSALARGVS---NNAFRQFVIGVTGYAKQEEITGLFTN  159 (242)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSC---HHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCceeeeecchhhhcCCC---HHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence            001112233344555668999999998875332   23334455566666655455444443

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=5.8e-05  Score=63.36  Aligned_cols=30  Identities=33%  Similarity=0.720  Sum_probs=25.7

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      |.-|++.|.||+||||+|+.|++.+...+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~   31 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGV   31 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            445889999999999999999999986543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.55  E-value=1.2e-05  Score=67.03  Aligned_cols=39  Identities=21%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE  245 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                      .++-|+|.||||+||||+|+.||+.++         +..++..+++..
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g---------~~~is~g~llr~   45 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYG---------YTHLSTGDLLRA   45 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTC---------CEEEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC---------CeeEeccHHHHH
Confidence            356788999999999999999999763         455666665543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.53  E-value=2.2e-05  Score=64.39  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +|+|.||||+||||+|+.||+.++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~   26 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGI   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            5889999999999999999998854

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.53  E-value=2e-05  Score=64.72  Aligned_cols=25  Identities=36%  Similarity=0.503  Sum_probs=22.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +++|.||||+||||+|+.|++.++.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~   26 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGI   26 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            6889999999999999999998854

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.1e-05  Score=65.36  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      |+-|+|.||||+||||.|+.||+.++
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45689999999999999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.5e-05  Score=64.75  Aligned_cols=29  Identities=31%  Similarity=0.332  Sum_probs=24.3

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      +.-|+|+|+||+||||+|+.||+.+....
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~l~~~~   47 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEYLVCHG   47 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            33466889999999999999999998643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=1.9e-05  Score=65.74  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .+-++|.||||+||||+|+.|++.++
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44578899999999999999999774

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.43  E-value=3.5e-05  Score=63.74  Aligned_cols=37  Identities=27%  Similarity=0.483  Sum_probs=28.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  243 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~  243 (438)
                      ....++|.||||+||||+|+.||+.++         +..++..+++
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g---------~~~is~gdll   41 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFE---------LKHLSSGDLL   41 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBC---------CEEEEHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHC---------CeEEcHHHHH
Confidence            456789999999999999999999764         3445555554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.0011  Score=56.29  Aligned_cols=119  Identities=15%  Similarity=0.123  Sum_probs=67.1

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH--HcCCcCCCCEEEeecc----------cccc---cccccchHHHHHHHHHccC
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY--MVGILPTDRVTEVQRT----------DLVG---EFVGHTGPKTRRRIKEAEG  263 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~--~~~~~~~~~~~~~~~~----------~~~~---~~~g~~~~~~~~~~~~a~~  263 (438)
                      .+.++++||...|||++.|.++-...  ..|...-.....+..-          +-+.   +.+...-..+..+++.+.+
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~  120 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE  120 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCT
T ss_pred             ceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHHHHHHHHHHHHHhccc
Confidence            35689999999999999999987552  2232222222222221          1111   1222233456677777754


Q ss_pred             -cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc-cCCCEEEEEecCChhHHHHhhhCcCc
Q 013706          264 -GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-DGGKVVVIFAGYSEPMKRVIASNEGF  323 (438)
Q Consensus       264 -~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~-~~~~v~vi~~~~~~~~~~~~~~~p~l  323 (438)
                       ++++|||+.+=      .....+..+...++..+ ......+|++|............|.+
T Consensus       121 ~sLvliDE~~~g------T~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~~~~~~~~v  176 (234)
T d1wb9a2         121 YSLVLMDEIGRG------TSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGV  176 (234)
T ss_dssp             TEEEEEESCCCC------SSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTE
T ss_pred             ccEEeecccccC------CChhhhhHHHHHhhhhhhccccceEEEecchHHHhhhhhcccce
Confidence             89999998432      23444555556666655 45556777777655554443334433

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.41  E-value=4e-05  Score=62.94  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .|+|.||||+||||+|+.||+.++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~   26 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGT   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            5889999999999999999998854

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.40  E-value=3.7e-05  Score=60.88  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~  222 (438)
                      -|+|.||||+||||+|+.|...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3778999999999999988653

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00013  Score=58.74  Aligned_cols=29  Identities=41%  Similarity=0.516  Sum_probs=25.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      +-+.|.|+||+|||||++.|++.+...|.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~   31 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGI   31 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence            35789999999999999999999876553

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=4.9e-05  Score=64.47  Aligned_cols=35  Identities=17%  Similarity=0.318  Sum_probs=28.0

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV  243 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~  243 (438)
                      +-|.+.||||+||+|+|+.||+.++         +..++..+++
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g---------l~~iStGdLl   38 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ---------WHLLDSGAIY   38 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT---------CEEEEHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC---------CcEECHHHHH
Confidence            4677889999999999999999885         3556666654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=4.8e-05  Score=62.32  Aligned_cols=25  Identities=32%  Similarity=0.454  Sum_probs=22.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..++|.||||+||||+|+.||+.++
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4588999999999999999999874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=5.2e-05  Score=62.02  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.5

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++|.||||+||||+|+.|++.++.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~   26 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGI   26 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5889999999999999999998753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.29  E-value=0.0012  Score=54.73  Aligned_cols=31  Identities=29%  Similarity=0.398  Sum_probs=20.4

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      ..|.-++|.||+|+||||.+-.||..+...+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g   40 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKG   40 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            3455678899999999998888887776543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.26  E-value=8e-05  Score=60.96  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=24.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      +-|+|.||||+||||+++.|++.+...+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999999999987644

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.26  E-value=0.00023  Score=55.02  Aligned_cols=21  Identities=14%  Similarity=0.107  Sum_probs=16.7

Q ss_pred             CCceEEecCCCCCHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARIL  219 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~l  219 (438)
                      ....++.+|+|+|||+++-.+
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHH
Confidence            346799999999999877443

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.0013  Score=53.97  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=21.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .|+|.||||+|||++++.+++...
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            489999999999999999998764

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.22  E-value=0.00047  Score=53.09  Aligned_cols=26  Identities=19%  Similarity=0.033  Sum_probs=19.3

Q ss_pred             CCCceEEecCCCCCHHHHHH-HHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVAR-ILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~-~la~~l  223 (438)
                      ...+++|++|||+|||..+- ++....
T Consensus         6 ~~~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             cCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence            45789999999999997663 444444

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.0018  Score=53.61  Aligned_cols=31  Identities=29%  Similarity=0.404  Sum_probs=23.9

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      ..|.-++|.||+|+||||.+-.+|..+...+
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g   37 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQG   37 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            3455677999999999988888888775433

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.14  E-value=0.0034  Score=51.83  Aligned_cols=27  Identities=30%  Similarity=0.287  Sum_probs=22.5

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      -++|.||+|+||||.+-.||..+...+
T Consensus        12 vi~lvGp~GvGKTTTiaKLA~~~~~~g   38 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTAAKLALYYKGKG   38 (207)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            367899999999998888888886554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.0019  Score=53.54  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=25.0

Q ss_pred             CCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          195 GARRPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       195 ~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      ....|.-++|.||+|+||||.+-.||..+...+
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~   39 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG   39 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            334555678999999999988888887775444

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.11  E-value=0.00011  Score=62.30  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      |.+.||||+||||+|+.||+.++.
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg~   29 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFGF   29 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            456799999999999999999854

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.10  E-value=0.00014  Score=59.80  Aligned_cols=28  Identities=32%  Similarity=0.388  Sum_probs=24.2

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      -++|.|+||+||||+++.|++.+...+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~~~~   30 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDNQGI   30 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            3678999999999999999999976443

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00014  Score=58.91  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=21.8

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      ..|.-+++.|+||+|||++|+.++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            35566889999999999999988764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.05  E-value=0.0033  Score=51.84  Aligned_cols=30  Identities=30%  Similarity=0.430  Sum_probs=23.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      .+.-++|.||+|+||||.+-.||..+...+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g   34 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG   34 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            456678999999999988888888775443

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.99  E-value=0.0027  Score=53.26  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=60.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHH--HHcCCcCCCCEEEeecccccc-------------cccccchHHHHHHHHHc-cCc
Q 013706          201 HMAFLGNPGTGKTMVARILGRLL--YMVGILPTDRVTEVQRTDLVG-------------EFVGHTGPKTRRRIKEA-EGG  264 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~-------------~~~g~~~~~~~~~~~~a-~~~  264 (438)
                      -++++||...|||++.|.++-..  ...|...-.....+..-+-+-             +.+...-..+..+++.+ .++
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~~~~s  116 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENS  116 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTE
T ss_pred             EEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCccccCCccHHHHhHHHHHHHhccCCCCc
Confidence            47899999999999999997654  222322222222222221111             11222334566777776 458


Q ss_pred             EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH
Q 013706          265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM  313 (438)
Q Consensus       265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~  313 (438)
                      +++|||+.+      +.....+..+...+++.+.+.+..++++|+-..+
T Consensus       117 LvliDE~~~------gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL  159 (224)
T d1ewqa2         117 LVLLDEVGR------GTSSLDGVAIATAVAEALHERRAYTLFATHYFEL  159 (224)
T ss_dssp             EEEEESTTT------TSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHH
T ss_pred             EEeeccccc------CcchhhhcchHHHHHHHHhhcCcceEEeeechhh
Confidence            999999842      2234445555566666665544555666655444

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.96  E-value=0.0005  Score=56.55  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      -|-+.||+|+||||+|+.|++.+...+
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~~   50 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQG   50 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            355899999999999999999988644

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.86  E-value=0.0042  Score=53.07  Aligned_cols=27  Identities=26%  Similarity=0.573  Sum_probs=22.7

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+...+.+.||+|+||||+++.++..+
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhccc
Confidence            455678899999999999999997644

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.84  E-value=0.00071  Score=58.61  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      ..-++|+|||+||||+++.+|.+.++
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34578999999999999999998764

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.84  E-value=0.0039  Score=51.38  Aligned_cols=19  Identities=21%  Similarity=0.315  Sum_probs=16.5

Q ss_pred             CCceEEecCCCCCHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVAR  217 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~  217 (438)
                      ..++++.+|+|+|||++|-
T Consensus        40 ~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHH
Confidence            4679999999999998874

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.80  E-value=0.0011  Score=55.13  Aligned_cols=24  Identities=29%  Similarity=0.180  Sum_probs=19.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+.++..|+|+|||.+|-.++..+
T Consensus        86 ~~~ll~~~tG~GKT~~a~~~~~~~  109 (206)
T d2fz4a1          86 KRGCIVLPTGSGKTHVAMAAINEL  109 (206)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CCcEEEeCCCCCceehHHhHHHHh
Confidence            356788999999999987777655

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.0027  Score=54.66  Aligned_cols=74  Identities=14%  Similarity=0.119  Sum_probs=45.1

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----cccc------------ch---HHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH------------TG---PKTRRRIK  259 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----~~g~------------~~---~~~~~~~~  259 (438)
                      ..-..|+||||+|||+++-.++......+.    ..+.++...-...    -+|-            .+   ..+..+.+
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~----~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~  129 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR  129 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCC----EEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHh
Confidence            345789999999999999999887765443    4455554321110    0010            11   12223334


Q ss_pred             HccCcEEEEeCcccccC
Q 013706          260 EAEGGILFVDEAYRLIP  276 (438)
Q Consensus       260 ~a~~~il~iDEid~l~~  276 (438)
                      +....+++||=+..+.+
T Consensus       130 ~~~~~liViDSi~al~~  146 (263)
T d1u94a1         130 SGAVDVIVVDSVAALTP  146 (263)
T ss_dssp             HTCCSEEEEECGGGCCC
T ss_pred             cCCCCEEEEECcccccc
Confidence            44568999999988875

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.76  E-value=0.0038  Score=53.77  Aligned_cols=108  Identities=14%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----cccc------------chH---HHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH------------TGP---KTRRRI  258 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----~~g~------------~~~---~~~~~~  258 (438)
                      ...-..|+||||||||++|-.++......+    ..++.++...-+..    -+|-            .+.   .+..++
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g----~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~  131 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV  131 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCC----CEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHH
Confidence            344567999999999999999988776544    24555555421111    0110            111   122223


Q ss_pred             HHccCcEEEEeCcccccCCCCCCC----c--hhHHHH----HHHHHhhccCCCEEEEEecC
Q 013706          259 KEAEGGILFVDEAYRLIPMQKADD----K--DYGIEA----LEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       259 ~~a~~~il~iDEid~l~~~~~~~~----~--~~~~~~----~~~ll~~~~~~~v~vi~~~~  309 (438)
                      ++....+|++|=+..+.++..-..    .  ....+.    +..|...+...++.+|+++.
T Consensus       132 ~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQ  192 (268)
T d1xp8a1         132 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ  192 (268)
T ss_dssp             TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred             hcCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEeE
Confidence            333558999999999987543111    1  112233    34444445566777777753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.71  E-value=0.002  Score=54.35  Aligned_cols=53  Identities=6%  Similarity=0.049  Sum_probs=30.9

Q ss_pred             HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEe
Q 013706          253 KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFA  307 (438)
Q Consensus       253 ~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~  307 (438)
                      .+...+++....+++||-+..+.....  ......+.+..++.......+.++..
T Consensus       116 ~l~~~i~~~~~~~viiD~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (242)
T d1tf7a1         116 RINYAIQKYRARRVSIDSVTSVFQQYD--ASSVVRRELFRLVARLKQIGATTVMT  168 (242)
T ss_dssp             HHHHHHHHHTCSEEEEECSTTTSTTTC--CHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHhhccchhhhhHHHHHHHhcc--ChhHHHHHHHHHHHHHHhcCCceEEe
Confidence            344455666778999999988875322  22333445556666655534444443

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.023  Score=46.63  Aligned_cols=46  Identities=20%  Similarity=0.425  Sum_probs=29.7

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      ..|++||+|.+...      ++. ..+..++..+.. .+++++.||-++.+..+
T Consensus       145 ~~lV~DEaD~l~~~------~f~-~~v~~I~~~l~~~~Q~il~SATl~~~v~~~  191 (206)
T d1s2ma1         145 SLFIMDEADKMLSR------DFK-TIIEQILSFLPPTHQSLLFSATFPLTVKEF  191 (206)
T ss_dssp             CEEEEESHHHHSSH------HHH-HHHHHHHTTSCSSCEEEEEESCCCHHHHHH
T ss_pred             eEEEeechhhhhhh------hhH-HHHHHHHHhCCCCCEEEEEEEeCCHHHHHH
Confidence            57999999999852      122 345677777765 34555566666665544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0071  Score=51.14  Aligned_cols=27  Identities=19%  Similarity=0.598  Sum_probs=22.8

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+...+.+.||+|+||||+++.+...+
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            345678899999999999999997644

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00044  Score=56.65  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=22.0

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +.|+|.||||+|||++++.+++...
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            3589999999999999999988653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0053  Score=53.13  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=21.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .-.+|+|+||+|||+++-.+|..+.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4467999999999999999987653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.67  E-value=0.0053  Score=52.41  Aligned_cols=27  Identities=26%  Similarity=0.575  Sum_probs=22.4

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+...+.+.||+|+||||+++.|...+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence            455678899999999999999997643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.61  E-value=0.00053  Score=57.20  Aligned_cols=42  Identities=17%  Similarity=0.132  Sum_probs=29.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL  242 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~  242 (438)
                      .+.-|.|+|.||+|||++|+.|++.+.....   .+.+.+++..+
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~l~~~~~---~~~~~ldgD~i   64 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQLVRDRR---VHAYRLDGDNI   64 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHHHC---CCEEEECHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC---ceEEEEcchHH
Confidence            3456889999999999999999987743211   14555555443

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.58  E-value=0.0045  Score=53.03  Aligned_cols=46  Identities=24%  Similarity=0.316  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          167 LHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       167 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .++.++.+.++...+.             ...+.+-||+|..|+|||.+|-..+.....
T Consensus        85 T~~Q~~ai~ei~~d~~-------------~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~  130 (264)
T d1gm5a3          85 TNAQKRAHQEIRNDMI-------------SEKPMNRLLQGDVGSGKTVVAQLAILDNYE  130 (264)
T ss_dssp             CHHHHHHHHHHHHHHH-------------SSSCCCCEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhh-------------ccCcceeeeeccccccccHHHHHHHHHHHh
Confidence            4445555666555442             346788999999999999998777665533

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.53  E-value=0.022  Score=46.31  Aligned_cols=24  Identities=21%  Similarity=0.348  Sum_probs=19.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+.|+.+|+|+|||.++-.++...
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~~~~~   47 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMIAEYR   47 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHHHHHHHH
Confidence            368999999999998877666544

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.51  E-value=0.0028  Score=54.62  Aligned_cols=107  Identities=19%  Similarity=0.260  Sum_probs=57.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc-cc---cc-----------cch----HHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-EF---VG-----------HTG----PKTRRRI  258 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~---~g-----------~~~----~~~~~~~  258 (438)
                      ...-..|+||||+|||++|-.++......+.    ..+.++...-++ ++   +|           .+.    ..+..++
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~----~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~  134 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAAGG----VAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI  134 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHTTC----EEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcCCC----EEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence            4445779999999999999888776655443    344554433111 00   01           011    1122233


Q ss_pred             HHccCcEEEEeCcccccCCCC----CCC--chhHHHHHHHHHhhc----cCCCEEEEEec
Q 013706          259 KEAEGGILFVDEAYRLIPMQK----ADD--KDYGIEALEEIMSVM----DGGKVVVIFAG  308 (438)
Q Consensus       259 ~~a~~~il~iDEid~l~~~~~----~~~--~~~~~~~~~~ll~~~----~~~~v~vi~~~  308 (438)
                      ++....+|+||=+..+.++..    .+.  -....+.+..+++.+    ...++.+|+++
T Consensus       135 ~~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~N  194 (269)
T d1mo6a1         135 RSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN  194 (269)
T ss_dssp             HTTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             hcCCCCEEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHHhhcCchhhhhh
Confidence            333458999999999986322    111  111223444444443    34567777775

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0063  Score=50.97  Aligned_cols=26  Identities=27%  Similarity=0.551  Sum_probs=21.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ...-+-|.||+|+||||+.+.++..+
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            44567899999999999999998754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.44  E-value=0.0032  Score=50.04  Aligned_cols=27  Identities=19%  Similarity=0.121  Sum_probs=23.8

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      +-+.|+||+||||++..++.+|...|.
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~~~g~   30 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAVREGW   30 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence            458999999999999999999987664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.32  E-value=0.00078  Score=52.90  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=27.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCE
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV  234 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~  234 (438)
                      -++|.|+=|+|||+++|.+++.++......+..|
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF   68 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTY   68 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTT
T ss_pred             EEEEecCCCccHHHHHHHHHhhcccccccCCCce
Confidence            4778999999999999999999876554444444

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.018  Score=47.87  Aligned_cols=60  Identities=15%  Similarity=0.236  Sum_probs=36.2

Q ss_pred             chHHHHHHHHHccC-----cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          250 TGPKTRRRIKEAEG-----GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       250 ~~~~~~~~~~~a~~-----~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      +...+...+.....     ..+++||+|.+....      +. .-+..+++.+.. .++++..||-++.+..+
T Consensus       138 TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~------f~-~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~  203 (218)
T d2g9na1         138 TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG------FK-DQIYDIFQKLNSNTQVVLLSATMPSDVLEV  203 (218)
T ss_dssp             CHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT------CH-HHHHHHHHHSCTTCEEEEEESCCCHHHHHH
T ss_pred             CChhHHHHHhcCCcccccceEEEeeecchhhcCc------hH-HHHHHHHHhCCCCCeEEEEEecCCHHHHHH
Confidence            34455555544321     799999999998532      11 334566666654 55666677766666544

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.24  E-value=0.0015  Score=58.24  Aligned_cols=92  Identities=13%  Similarity=0.181  Sum_probs=51.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec-ccc-------cccccccchHHHHHHHHHc---cCcEEE
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR-TDL-------VGEFVGHTGPKTRRRIKEA---EGGILF  267 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~-------~~~~~g~~~~~~~~~~~~a---~~~il~  267 (438)
                      ..++|+.||+|+|||++.+++...+..     ...++.+.. .++       ...+.+..+-...++++.+   .+-.|+
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~-----~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~ii  240 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPK-----EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRII  240 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCT-----TCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEE
T ss_pred             CCCEEEEeeccccchHHHHHHhhhccc-----ccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCccc
Confidence            468999999999999999999875532     122332211 111       1112222222334444443   568999


Q ss_pred             EeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706          268 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY  309 (438)
Q Consensus       268 iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~  309 (438)
                      +.|+-.-             ++ ..+++.+..+..-++.+..
T Consensus       241 vgEiR~~-------------ea-~~~l~a~~tGh~g~~tT~H  268 (323)
T d1g6oa_         241 LGELRSS-------------EA-YDFYNVLCSGHKGTLTTLH  268 (323)
T ss_dssp             ESCCCST-------------HH-HHHHHHHHTTCSCEEEEEC
T ss_pred             CCccCch-------------hH-HHHHHHHHhcCCcEEEEEC
Confidence            9998310             33 3466777766543444433

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=96.23  E-value=0.014  Score=48.91  Aligned_cols=27  Identities=30%  Similarity=0.165  Sum_probs=22.4

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..+...||+|.+|+|||.++-..+...
T Consensus        74 ~~~~~~LL~GdvGsGKT~V~~~a~~~~  100 (233)
T d2eyqa3          74 PLAMDRLVCGDVGFGKTEVAMRAAFLA  100 (233)
T ss_dssp             SSCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred             cCccCeEEEcCCCCCcHHHHHHHHHHH
Confidence            467789999999999999887776654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.23  E-value=0.0012  Score=53.69  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +-++|.||||+|||++++.+.+..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            357899999999999999998765

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.023  Score=47.32  Aligned_cols=46  Identities=20%  Similarity=0.323  Sum_probs=30.8

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      ..++|||+|.+....      +. .-+..++..+.. .++++..||-++.+..+
T Consensus       161 ~~lVlDEaD~ll~~~------f~-~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l  207 (222)
T d2j0sa1         161 KMLVLDEADEMLNKG------FK-EQIYDVYRYLPPATQVVLISATLPHEILEM  207 (222)
T ss_dssp             CEEEEETHHHHTSTT------TH-HHHHHHHTTSCTTCEEEEEESCCCHHHHTT
T ss_pred             eeeeecchhHhhhcC------cH-HHHHHHHHhCCCCCEEEEEEEeCCHHHHHH
Confidence            589999999998632      11 334666666654 45677777777776544

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.032  Score=45.75  Aligned_cols=46  Identities=15%  Similarity=0.447  Sum_probs=30.4

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      ..|++||+|.|....      + .+.+..++..+.. .++++..||-++.+..+
T Consensus       148 ~~lVlDEaD~ll~~~------f-~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l  194 (206)
T d1veca_         148 QMIVLDEADKLLSQD------F-VQIMEDIILTLPKNRQILLYSATFPLSVQKF  194 (206)
T ss_dssp             CEEEEETHHHHTSTT------T-HHHHHHHHHHSCTTCEEEEEESCCCHHHHHH
T ss_pred             ceEEEeccccccccc------h-HHHHHHHHHhCCCCCEEEEEEecCCHHHHHH
Confidence            689999999998532      1 1345666777754 45666677766665544

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.99  E-value=0.039  Score=50.35  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=62.1

Q ss_pred             HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      .++++.-.+...+.+++++.                 .+..-+|+.||+|+||||+..++-..+....    ..++.+.-
T Consensus       136 ~l~~LG~~~~~~~~l~~l~~-----------------~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~----~~i~tiEd  194 (401)
T d1p9ra_         136 DLHSLGMTAHNHDNFRRLIK-----------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSE----RNILTVED  194 (401)
T ss_dssp             CGGGSCCCHHHHHHHHHHHT-----------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTT----SCEEEEES
T ss_pred             hhhhhcccHHHHHHHHHHHh-----------------hhhceEEEEcCCCCCccHHHHHHhhhhcCCC----ceEEEecc
Confidence            46676666666666666522                 2334478999999999999999988774322    13333322


Q ss_pred             c-ccc-----c-cccccchHHHHHHHH---HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEE
Q 013706          240 T-DLV-----G-EFVGHTGPKTRRRIK---EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF  306 (438)
Q Consensus       240 ~-~~~-----~-~~~g~~~~~~~~~~~---~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~  306 (438)
                      + +..     . ...+.........++   ...+-||+|.|+...             +.....++.-..|+.++-.
T Consensus       195 PiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd~-------------~ta~~a~~aa~tGhlV~tT  258 (401)
T d1p9ra_         195 PIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDL-------------ETAQIAVQASLTGHLVMST  258 (401)
T ss_dssp             SCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSH-------------HHHHHHHHHHHTTCEEEEE
T ss_pred             CcccccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCCh-------------HHHHHHHHHHhcCCeEEEE
Confidence            1 111     0 011112222333333   336789999999533             2334445555556554443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.92  E-value=0.017  Score=48.63  Aligned_cols=26  Identities=31%  Similarity=0.565  Sum_probs=21.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-+-|.||.|+||||+.++|+..+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34456699999999999999998754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0025  Score=51.54  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +.++|.||+|+|||++++.+.+..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999988753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0013  Score=55.99  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=20.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +..-++|+||||||||+++-.++.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            455689999999999999988865

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0019  Score=53.87  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=22.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVG  227 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~  227 (438)
                      -|-+.||+|+||||+|+.|++.++...
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~~   30 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQNE   30 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhchhc
Confidence            355899999999999999999886533

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.73  E-value=0.018  Score=49.68  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=20.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..-++|.|+||+|||+++..++..+
T Consensus        35 G~l~vi~G~~G~GKT~~~~~la~~~   59 (277)
T d1cr2a_          35 GEVIMVTSGSGMGKSTFVRQQALQW   59 (277)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHhh
Confidence            3457899999999999999998654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.72  E-value=0.004  Score=51.66  Aligned_cols=29  Identities=28%  Similarity=0.383  Sum_probs=25.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      +-|.|.|++|+||||+++.|++.+...|+
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~   31 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGI   31 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence            45789999999999999999999987654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0044  Score=51.43  Aligned_cols=28  Identities=25%  Similarity=0.279  Sum_probs=24.3

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      -|.|.|+.|+||||+++.|++.|...|+
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~~L~~~g~   32 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVEALCAAGH   32 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            4667799999999999999999987664

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0023  Score=53.31  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=21.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-++++||||+|||++|-.++...
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44568899999999999999888654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.66  E-value=0.0027  Score=54.20  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ...-++++||||+|||++|-.++...
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34458899999999999999887754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.052  Score=43.84  Aligned_cols=19  Identities=21%  Similarity=0.466  Sum_probs=17.9

Q ss_pred             ceEEecCCCCCHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARIL  219 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~l  219 (438)
                      .++|.|.+|+|||++...+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.004  Score=54.69  Aligned_cols=28  Identities=32%  Similarity=0.444  Sum_probs=23.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .|.-|-+.|++|+||||+|+.|...+..
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~~  106 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLSR  106 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHhh
Confidence            4555669999999999999999998853

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0033  Score=53.64  Aligned_cols=26  Identities=23%  Similarity=0.149  Sum_probs=21.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-++++||||+|||++|-.++...
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34458899999999999999998744

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.43  E-value=0.004  Score=54.79  Aligned_cols=27  Identities=22%  Similarity=0.330  Sum_probs=20.3

Q ss_pred             CCceEEecCCCCCHHH-HHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTM-VARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~-la~~la~~l~~  225 (438)
                      ..++++.||||||||+ ++..++..+..
T Consensus        14 ~~~~lI~g~aGTGKTt~l~~rv~~ll~~   41 (306)
T d1uaaa1          14 TGPCLVLAGAGSGKTRVITNKIAHLIRG   41 (306)
T ss_dssp             SSEEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeCCccHHHHHHHHHHHHHHh
Confidence            3568999999999996 45666666544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.40  E-value=0.004  Score=48.76  Aligned_cols=21  Identities=24%  Similarity=0.314  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|+||+|||+|...+..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999865

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.39  E-value=0.0093  Score=50.36  Aligned_cols=25  Identities=24%  Similarity=0.280  Sum_probs=19.8

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..++++.+|+|+|||+++-..+..+
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~~~   82 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSLFL   82 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHH
Confidence            4689999999999998776655544

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.073  Score=43.52  Aligned_cols=47  Identities=17%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      ..+++||+|.+....      .....+..++..+.. .++++..||-++.+..+
T Consensus       147 ~~lVlDEaD~ll~~~------~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l  194 (207)
T d1t6na_         147 KHFILDECDKMLEQL------DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV  194 (207)
T ss_dssp             CEEEEESHHHHHSSH------HHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHH
T ss_pred             ceeehhhhhhhhhcC------CcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHH
Confidence            689999999998521      112345666767654 45666677776666544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.005  Score=50.85  Aligned_cols=24  Identities=17%  Similarity=0.188  Sum_probs=20.7

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .-++|.||+|+|||+|.+.+.+..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            347899999999999999998754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.29  E-value=0.0061  Score=50.24  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=24.0

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          202 MAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      |.|.|+.|+||||+++.|++.+...|.
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~g~   29 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAAGR   29 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            678999999999999999999977554

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.21  E-value=0.058  Score=44.18  Aligned_cols=44  Identities=16%  Similarity=0.269  Sum_probs=27.1

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK  314 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~  314 (438)
                      ..++|||+|.+.....      . ..+..++..+.. .+++++.||-++.+.
T Consensus       147 ~~lViDEad~l~~~~~------~-~~i~~I~~~~~~~~Q~i~~SAT~~~~v~  191 (208)
T d1hv8a1         147 KYFILDEADEMLNMGF------I-KDVEKILNACNKDKRILLFSATMPREIL  191 (208)
T ss_dssp             CEEEEETHHHHHTTTT------H-HHHHHHHHTSCSSCEEEEECSSCCHHHH
T ss_pred             cEEEEEChHHhhcCCC------h-HHHHHHHHhCCCCCeEEEEEccCCHHHH
Confidence            6999999999875321      1 335667777754 345555555555544

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.12  Score=42.34  Aligned_cols=46  Identities=20%  Similarity=0.369  Sum_probs=28.5

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      ..+++||+|.+....      +. ..+..++..+.. .++++..||-++.+..+
T Consensus       153 ~~lVlDEad~lld~~------f~-~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l  199 (212)
T d1qdea_         153 KMFILDEADEMLSSG------FK-EQIYQIFTLLPPTTQVVLLSATMPNDVLEV  199 (212)
T ss_dssp             CEEEEETHHHHHHTT------CH-HHHHHHHHHSCTTCEEEEEESSCCHHHHHH
T ss_pred             eEEeehhhhhhcccc------hH-HHHHHHHHhCCCCCeEEEEEeeCCHHHHHH
Confidence            789999999998531      11 334556666644 45666666666655544

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.039  Score=42.91  Aligned_cols=21  Identities=24%  Similarity=0.495  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .|+|.|+||+|||+|..++..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999998864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.023  Score=50.28  Aligned_cols=41  Identities=27%  Similarity=0.460  Sum_probs=29.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ...|-+.||||+|||+|...++..+...|.  +..++.+++++
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~--~vavlavDpss   94 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGL--KVAVIAVDPSS   94 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHHTTC--CEEEEEECCC-
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHHhcCC--ceeeecCCCce
Confidence            445779999999999999999988866543  22345555543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=0.016  Score=50.12  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=21.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .|.-|-|.|++|+||||++..|...+.
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~   52 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNHLM   52 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHHHH
Confidence            343455899999999999999988774

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.90  E-value=0.0067  Score=49.33  Aligned_cols=23  Identities=39%  Similarity=0.622  Sum_probs=19.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      |.-+-++|++|+|||++|+.+.+
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            44456899999999999999854

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.87  E-value=0.038  Score=43.57  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||++.+.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.82  E-value=0.014  Score=51.42  Aligned_cols=26  Identities=19%  Similarity=0.370  Sum_probs=19.7

Q ss_pred             CCceEEecCCCCCHHH-HHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTM-VARILGRLLY  224 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~-la~~la~~l~  224 (438)
                      ..++++.|+||||||+ ++..++..+.
T Consensus        24 ~g~~lV~g~aGSGKTt~l~~ri~~ll~   50 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVLTHRIAYLMA   50 (318)
T ss_dssp             SSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHHHHHHH
Confidence            3569999999999995 5555666664

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.80  E-value=0.008  Score=50.76  Aligned_cols=23  Identities=39%  Similarity=0.739  Sum_probs=20.6

Q ss_pred             eEEecCCCCCHHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +++.||+|+||||+.+.+.+.+.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Confidence            67999999999999999987664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.79  E-value=0.0077  Score=49.65  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=19.7

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      ++|+|.|+||+|||+|...+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999988865

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.78  E-value=0.0076  Score=48.03  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=20.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...++||.||||+|||++|-.+.+
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            356899999999999999987765

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.73  E-value=0.0081  Score=46.97  Aligned_cols=21  Identities=33%  Similarity=0.567  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|+||+|||+|...+..
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999998875

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=94.72  E-value=0.011  Score=51.91  Aligned_cols=17  Identities=29%  Similarity=0.354  Sum_probs=14.9

Q ss_pred             CCCceEEecCCCCCHHH
Q 013706          198 RPPHMAFLGNPGTGKTM  214 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~  214 (438)
                      ..+.+++.+|+|+|||+
T Consensus         8 ~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TTCEEEECCCTTSSTTT
T ss_pred             cCCcEEEEECCCCCHHH
Confidence            45679999999999995

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=94.71  E-value=0.11  Score=43.56  Aligned_cols=46  Identities=15%  Similarity=0.376  Sum_probs=27.3

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~~~~~~~  316 (438)
                      ..++|||+|.+....      +... +..+++.+..     .++++..||-+..+..+
T Consensus       174 ~~lViDEaD~ll~~~------f~~~-i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l  224 (238)
T d1wrba1         174 KYIVLDEADRMLDMG------FEPQ-IRKIIEESNMPSGINRQTLMFSATFPKEIQKL  224 (238)
T ss_dssp             CEEEEETHHHHHHTT------CHHH-HHHHHHSSCCCCGGGCEEEEEESSCCHHHHHH
T ss_pred             ceeeeehhhhhhhhc------cHHH-HHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHH
Confidence            689999999998532      1112 2445554432     34566667666665544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.70  E-value=0.0033  Score=51.46  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=23.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      .|.-|.|.|+.|+||||+++.|++.+.
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            445678999999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.69  E-value=0.007  Score=51.22  Aligned_cols=25  Identities=28%  Similarity=0.260  Sum_probs=21.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..-++|+||||+|||+++-.+|..+
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3457899999999999999998755

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.68  E-value=0.0083  Score=47.20  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=19.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      ..++|.|+||+|||+|.+++..
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            3589999999999999998865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.66  E-value=0.0075  Score=47.62  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|+||+|||+|.+.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            589999999999999998854

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.65  E-value=0.082  Score=43.16  Aligned_cols=46  Identities=28%  Similarity=0.339  Sum_probs=29.2

Q ss_pred             cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706          264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV  316 (438)
Q Consensus       264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~  316 (438)
                      ..++|||+|.+....      +. ..+..++..+.. .++++..||-++.+..+
T Consensus       149 ~~lViDEad~ll~~~------f~-~~v~~I~~~~~~~~Q~il~SATl~~~v~~l  195 (209)
T d1q0ua_         149 HILVVDEADLMLDMG------FI-TDVDQIAARMPKDLQMLVFSATIPEKLKPF  195 (209)
T ss_dssp             CEEEECSHHHHHHTT------CH-HHHHHHHHTSCTTCEEEEEESCCCGGGHHH
T ss_pred             eEEEEeecccccccc------cH-HHHHHHHHHCCCCCEEEEEEccCCHHHHHH
Confidence            689999999998632      11 334666666644 45666666666655544

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0089  Score=47.69  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=18.6

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||+|+..+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999998764

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.61  E-value=0.02  Score=49.57  Aligned_cols=25  Identities=12%  Similarity=0.252  Sum_probs=20.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      +.++.-|+|+|||.+|-.++..+..
T Consensus       130 ~~il~~pTGsGKT~i~~~i~~~~~~  154 (282)
T d1rifa_         130 RRILNLPTSAGRSLIQALLARYYLE  154 (282)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CceeEEEcccCccHHHHHHHHHhhh
Confidence            4677779999999999888876643

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.49  E-value=0.0093  Score=50.08  Aligned_cols=23  Identities=22%  Similarity=0.550  Sum_probs=19.6

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l  223 (438)
                      -+.|.||+|+||||+.+.|+..+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35588999999999999998744

>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase domain of protease Lon (La)
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.021  Score=40.24  Aligned_cols=88  Identities=16%  Similarity=0.079  Sum_probs=62.7

Q ss_pred             CCCCHHHHHHHHHHHHhcccccccccccc-ccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCC
Q 013706          334 NDFNSEELAKILHIKMNNQTEDSLLYGFK-LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDC  412 (438)
Q Consensus       334 ~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~  412 (438)
                      +.|+.+|..+|.++||-...  ....|+. -...++++++..++..|+     +...+|.|...++...|+++.++..+.
T Consensus         1 SGYt~~EK~~Iak~yLiPk~--l~~~gl~~~~i~i~~~~l~~iI~~Yt-----rEaGVR~Ler~i~~I~Rk~a~~~~~~~   73 (94)
T d1qzma_           1 SGYTEDEKLNIAKRHLLPKQ--IERNALKKGELTVDDSAIIGIIRYYT-----REAGVRGLEREISKLCRKAVKQLLLDK   73 (94)
T ss_dssp             CCCCHHHHHHHHHHTHHHHH--HHHTTCCTTTEEECHHHHHHHHHHHC-----CCSSSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCCHHHHHHHHHHHhHHHH--HHHhccccccccchHHHHHHHHHHHc-----cHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            36889999999999985432  2234663 346789999999999987     345589999999999999887765332


Q ss_pred             CChhhhhhccHHHHHHHH
Q 013706          413 LDTDELRTITLEDLEAGL  430 (438)
Q Consensus       413 ~~~~~~~~i~~~d~~~a~  430 (438)
                        ......|+.+++.+.|
T Consensus        74 --~~~~~~i~~~~l~~~L   89 (94)
T d1qzma_          74 --SLKHIEINGDNLHDYL   89 (94)
T ss_dssp             --TCCCEEECTTTTHHHH
T ss_pred             --CCCCeeeCHHHHHHHc
Confidence              1123467778776554

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.44  E-value=0.0079  Score=47.96  Aligned_cols=24  Identities=25%  Similarity=0.167  Sum_probs=20.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...++||.||+|+|||++|-.+..
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            356899999999999999987765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.011  Score=48.58  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      +.|+|.|+||+|||+|..+|..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5799999999999999999975

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.35  E-value=0.011  Score=46.55  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|+||+|||+|...+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988765

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.058  Score=43.98  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=17.3

Q ss_pred             CCceEEecCCCCCHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARIL  219 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~l  219 (438)
                      ..++++.-|+|+|||.++...
T Consensus        40 g~~vlv~apTGsGKT~~~~~~   60 (206)
T d1oywa2          40 GRDCLVVMPTGGGKSLCYQIP   60 (206)
T ss_dssp             TCCEEEECSCHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCcchhhhh
Confidence            358999999999999877443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.011  Score=46.63  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||++++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998865

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.27  E-value=0.012  Score=46.41  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|++|+|||+|...+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999998865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.0093  Score=50.40  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=24.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      |+-|.|.|+-|+||||+++.|++.+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            567889999999999999999998754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.24  E-value=0.012  Score=46.67  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=20.4

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...++||.||+|+|||++|-.+.+
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            356899999999999999977665

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.24  E-value=0.011  Score=49.37  Aligned_cols=25  Identities=24%  Similarity=0.590  Sum_probs=21.1

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      .....+-|.||+|+||||+.++++.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCcchhhHhccC
Confidence            3455678999999999999999975

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.23  E-value=0.011  Score=48.36  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=20.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      +..-+.|.||.|+||||+.++++.
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            445677999999999999999975

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.21  E-value=0.0089  Score=47.88  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=20.3

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ....++|.|+||+|||+|..++..
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345699999999999999988854

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.19  E-value=0.017  Score=49.89  Aligned_cols=28  Identities=18%  Similarity=0.460  Sum_probs=21.3

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      -|-+.|++|+|||++++++.+.+...++
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v   33 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGV   33 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            5779999999999999999999876543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.18  E-value=0.012  Score=49.59  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=21.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..--+-|.||+|+||||++++++..+
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34457799999999999999998643

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.012  Score=47.45  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=18.5

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||+|++.+..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999988764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.013  Score=46.22  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||+|...+..
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998865

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.13  E-value=0.013  Score=46.41  Aligned_cols=21  Identities=24%  Similarity=0.340  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||+|...+..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999998875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.0099  Score=50.01  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...-+-|.||+|+||||+.++|+.
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcC
Confidence            345677999999999999999975

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.039  Score=47.45  Aligned_cols=30  Identities=20%  Similarity=0.285  Sum_probs=25.3

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ......+++.||+|||||+++..+++....
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            345677999999999999999999987654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.07  E-value=0.068  Score=47.00  Aligned_cols=41  Identities=29%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD  241 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  241 (438)
                      ..-+=+.||||+|||++...+.+.+...+.  +..++.++++.
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~--~vaViavDpss   91 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSLLTAAGH--KVAVLAVDPSS   91 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTC--CEEEEEECGGG
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHHHhhcCC--ceeeeeccccc
Confidence            334669999999999999999987754442  23456666654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.013  Score=46.46  Aligned_cols=21  Identities=33%  Similarity=0.687  Sum_probs=19.1

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|+||+|||+|.+.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999999875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.015  Score=46.11  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||+|.+.+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999998875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.01  E-value=0.014  Score=46.36  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      -|.+.|+||+|||+|.++|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999964

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.016  Score=46.07  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .|++.|.+|+|||+|.+.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            599999999999999988765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.99  E-value=0.016  Score=47.11  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=20.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      .-+.|.|.|+||+|||+|.++|..
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcC
Confidence            345799999999999999999963

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.95  E-value=0.017  Score=48.48  Aligned_cols=26  Identities=31%  Similarity=0.511  Sum_probs=21.5

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      +..-+-|.||+|+||||+.+.++..+
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcCC
Confidence            44457899999999999999997643

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.015  Score=46.36  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||+|+..+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.016  Score=45.94  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=19.1

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||+|+..+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.86  E-value=0.014  Score=46.40  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...++|.|.||+|||+|...+..
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999998864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.016  Score=45.71  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|.+|+|||+|.+.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            479999999999999998865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.017  Score=45.83  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|.||+|||+|.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998865

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.71  E-value=0.011  Score=49.33  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=21.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      ..--+.|.||+|+||||+.++++..
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            3445779999999999999999863

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.017  Score=45.53  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||+|...+..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.70  E-value=0.019  Score=45.64  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             CCceEEecCCCCCHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la  220 (438)
                      ...+++.|+||+|||+|...+.
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEEECCCCCCHHHHHHHHh
Confidence            3469999999999999998874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.69  E-value=0.017  Score=45.47  Aligned_cols=21  Identities=19%  Similarity=0.449  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||++.+.+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998865

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.018  Score=45.75  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=18.6

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||+|...+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            488999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.61  E-value=0.019  Score=45.09  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||+|...+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.019  Score=45.67  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|+||+|||+++..+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.02  Score=48.62  Aligned_cols=27  Identities=37%  Similarity=0.546  Sum_probs=22.4

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+...+.+.||+|+||||+++.|...+
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            455678899999999999999997533

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.02  Score=45.34  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||++++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.47  E-value=0.021  Score=49.36  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=23.3

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ..+...+.+.||+|+||||+.++|+..+
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            4455668899999999999999998654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=93.47  E-value=0.016  Score=48.99  Aligned_cols=27  Identities=30%  Similarity=0.546  Sum_probs=22.3

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      .+...+.+.||+|+||||+++.++..+
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            344567899999999999999997654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.02  Score=44.94  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|.+|+|||+|.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.02  Score=45.13  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      ..|++.|++|+|||+|...+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999998865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.02  Score=45.32  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=18.3

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||+|...+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999988764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.02  Score=45.24  Aligned_cols=21  Identities=48%  Similarity=0.930  Sum_probs=18.5

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||+|++.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            378999999999999998865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.38  E-value=0.012  Score=49.43  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=22.4

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ....-+.|.||+|+||||+.++|+...
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            345568899999999999999998743

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.32  E-value=0.092  Score=39.83  Aligned_cols=21  Identities=38%  Similarity=0.311  Sum_probs=16.4

Q ss_pred             EEecCCCCCHHH-HHHHHHHHH
Q 013706          203 AFLGNPGTGKTM-VARILGRLL  223 (438)
Q Consensus       203 ll~GppGtGKT~-la~~la~~l  223 (438)
                      +++||=.+|||+ |.+.+.+.-
T Consensus         6 ~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHHHHH
Confidence            578999999998 777765543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.31  E-value=0.023  Score=45.65  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|.||||||+|+..+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998865

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.023  Score=44.77  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|.+|+|||+|.+.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.022  Score=45.36  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||+|...+..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999988865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.24  E-value=0.02  Score=45.80  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .|+|.|+||+|||+|..+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.24  E-value=0.21  Score=39.89  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=19.3

Q ss_pred             ceEEecCCCCCHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~  222 (438)
                      .+++.|.+|+|||++.+.+...
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.23  E-value=0.018  Score=49.09  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=20.6

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ..--+-|.||+|+||||++++|+.
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            445577999999999999999975

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.23  E-value=0.025  Score=46.73  Aligned_cols=27  Identities=30%  Similarity=0.191  Sum_probs=23.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ++-|.|.|+-|+||||+++.|++.+..
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            345789999999999999999998754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.19  E-value=0.024  Score=46.69  Aligned_cols=20  Identities=35%  Similarity=0.591  Sum_probs=17.6

Q ss_pred             eEEecCCCCCHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~  221 (438)
                      |-++|++|+|||++|+.+.+
T Consensus         6 IgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHHH
Confidence            45899999999999998864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.18  E-value=0.025  Score=44.59  Aligned_cols=21  Identities=24%  Similarity=0.503  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|.+|+|||+|.+.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998865

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.025  Score=44.91  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|+||+|||+|...+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.11  E-value=0.015  Score=46.30  Aligned_cols=23  Identities=26%  Similarity=0.277  Sum_probs=19.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...+++.|+||+|||++.+.+..
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35699999999999999998853

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.10  E-value=0.099  Score=43.17  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      ..+||.|++|+|||++.+.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999988853

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.025  Score=44.88  Aligned_cols=21  Identities=29%  Similarity=0.662  Sum_probs=18.5

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|++|+|||+|...+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988753

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.014  Score=46.69  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=21.4

Q ss_pred             CCCCCceEEecCCCCCHHHHHHHHH
Q 013706          196 ARRPPHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       196 ~~~~~~~ll~GppGtGKT~la~~la  220 (438)
                      ......|.|.|+|++|||+|.++|.
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHh
Confidence            4456779999999999999999884

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.026  Score=44.92  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=19.5

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      -.+++.|++|+|||+|.+.+..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3589999999999999998865

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.93  E-value=0.2  Score=41.40  Aligned_cols=45  Identities=11%  Similarity=-0.012  Sum_probs=29.6

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE  245 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~  245 (438)
                      ..+.+|.=++|+|||..|-+++..+...+..  .+++.+-+..+...
T Consensus        31 ~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~--~~~LIv~p~~l~~~   75 (230)
T d1z63a1          31 GFGICLADDMGLGKTLQTIAVFSDAKKENEL--TPSLVICPLSVLKN   75 (230)
T ss_dssp             TCCEEECCCTTSCHHHHHHHHHHHHHHTTCC--SSEEEEECSTTHHH
T ss_pred             CCCEEEEeCCCCChHHHHHHhhhhhhhcccc--cccceecchhhhhH
Confidence            4578888899999999988887766543321  24444555554433

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.90  E-value=0.027  Score=45.72  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||+|...+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            488999999999999998865

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.86  E-value=0.028  Score=44.98  Aligned_cols=21  Identities=19%  Similarity=0.539  Sum_probs=18.7

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|++|+|||+|.+.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.85  E-value=0.029  Score=44.30  Aligned_cols=21  Identities=19%  Similarity=0.395  Sum_probs=18.4

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||+|...+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999988764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.009  Score=50.37  Aligned_cols=25  Identities=28%  Similarity=0.402  Sum_probs=22.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      +-|.|.||-|+||||+++.|++.+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4578999999999999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=92.77  E-value=0.018  Score=46.22  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.3

Q ss_pred             CCCCceEEecCCCCCHHHHHHHHH
Q 013706          197 RRPPHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       197 ~~~~~~ll~GppGtGKT~la~~la  220 (438)
                      .....+++.|+||+|||++.+.+.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            345679999999999999998874

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.65  E-value=0.033  Score=44.01  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      -.+++.|++|+|||++...+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999998875

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.63  E-value=0.026  Score=46.32  Aligned_cols=20  Identities=30%  Similarity=0.604  Sum_probs=17.2

Q ss_pred             eEEecCCCCCHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~  221 (438)
                      |-++|++|+||||+|+.+.+
T Consensus         5 IgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            44899999999999998864

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.074  Score=45.92  Aligned_cols=31  Identities=32%  Similarity=0.417  Sum_probs=26.7

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      .|+-+++.|.-|+||||+|-.+|..+...|.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~   37 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGK   37 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCC
Confidence            4667788999999999999999999977654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.032  Score=45.08  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=18.5

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||+|...+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999888765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.033  Score=44.59  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|.+|+|||+|.+.+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.034  Score=44.66  Aligned_cols=21  Identities=19%  Similarity=0.298  Sum_probs=18.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|.+|+|||+|.+.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            588999999999999988865

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.43  E-value=0.033  Score=44.34  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.1

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .|.|.|+||+|||++.+++..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.29  E-value=0.02  Score=45.44  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=9.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|.||||||+|...+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.23  E-value=0.027  Score=45.01  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=19.3

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      +.|.|.|.||+|||+|..+|..
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3688999999999999999853

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.21  E-value=0.058  Score=45.85  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...+|+|.|.||+|||++..+|..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhC
Confidence            456899999999999999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.025  Score=44.82  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=17.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+++.|++|+|||+|...+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999988755

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=92.04  E-value=0.032  Score=46.95  Aligned_cols=64  Identities=22%  Similarity=0.332  Sum_probs=37.1

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccC
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP  276 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~  276 (438)
                      +..-+-|.||.|+||||+.++|+..+     ..+.--+.++..++...     ...     ..++.+|.|+.+-..+.+
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl~-----~p~~G~I~~~G~~i~~~-----~~~-----~~~r~gi~~~~q~~~l~~   94 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGLV-----RAQKGKIIFNGQDITNK-----PAH-----VINRMGIALVPEGRRIFP   94 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS-----CCSEEEEEETTEECTTC-----CHH-----HHHHTTEEEECSSCCCCT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC-----CCCccEEEecccccccc-----cHH-----HHHHhcccccCcccccCC
Confidence            34457799999999999999996532     11222344444433221     111     122457888876555554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.01  E-value=0.041  Score=45.50  Aligned_cols=21  Identities=19%  Similarity=0.329  Sum_probs=18.7

Q ss_pred             CceEEecCCCCCHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la  220 (438)
                      +-.+|.|++|+|||+|..+|.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHhhc
Confidence            467899999999999999885

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.99  E-value=0.061  Score=49.49  Aligned_cols=37  Identities=35%  Similarity=0.528  Sum_probs=26.7

Q ss_pred             CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706          199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR  239 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  239 (438)
                      ..|+++.|+||+|||.+.+.+...+...+    .+++.+++
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g----~~~iiiD~   86 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGLLRG----DRMVIVDP   86 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTT----CEEEEEEE
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHHHhCC----CCEEEEeC
Confidence            46899999999999998887766554332    25555554

>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=91.86  E-value=0.24  Score=42.78  Aligned_cols=50  Identities=22%  Similarity=0.156  Sum_probs=31.0

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHHHHcCCc---CCCCEEEeeccccccccc
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVTEVQRTDLVGEFV  247 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~  247 (438)
                      ...+.+|.=+.|+|||..|=++...+...+..   ...+++.+-+..+...|.
T Consensus        78 ~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~~qW~  130 (298)
T d1z3ix2          78 NSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWY  130 (298)
T ss_dssp             TCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHH
T ss_pred             cCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccchhhHHHH
Confidence            45689999999999998765554444333322   123456666666655543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.04  Score=43.73  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .|.|.|.||+|||+|..+|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999999964

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.63  E-value=0.036  Score=44.36  Aligned_cols=21  Identities=19%  Similarity=0.548  Sum_probs=18.6

Q ss_pred             CceEEecCCCCCHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la  220 (438)
                      +.|-|.|+|++|||+|..+|.
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSE
T ss_pred             CeEEEECCCCCCHHHHHHHHh
Confidence            358899999999999999884

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.32  E-value=0.057  Score=45.25  Aligned_cols=23  Identities=17%  Similarity=0.160  Sum_probs=19.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l  223 (438)
                      -|-|+|+.|+||||+|+.+++.+
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            36689999999999999998754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.11  E-value=0.045  Score=46.43  Aligned_cols=25  Identities=16%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~  222 (438)
                      +..-+-|.||.|+||||+.++|+..
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCC
Confidence            4445779999999999999999753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=90.87  E-value=0.049  Score=45.45  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=20.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ..--+-|.||.|+||||+.++++.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            444577999999999999999975

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=90.77  E-value=0.062  Score=42.86  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=19.9

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      ...|.|.|+||+|||+|..++..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            35689999999999999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.59  E-value=0.022  Score=44.40  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .+.|.|+||+|||+|..++..
T Consensus         2 kI~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999965

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.35  E-value=0.026  Score=45.80  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=20.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      -.+|+||.|+|||++..+|.-.+.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            357899999999999999987764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.30  E-value=0.13  Score=41.97  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=25.0

Q ss_pred             CceEEecC-CCCCHHHHHHHHHHHHHHcCC
Q 013706          200 PHMAFLGN-PGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       200 ~~~ll~Gp-pGtGKT~la~~la~~l~~~~~  228 (438)
                      +.+++.|- +|+|||+++-.||..+...|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~   31 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGY   31 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCC
Confidence            45788898 699999999999999987765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.08  Score=41.94  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.0

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      .-.+++.|++|+|||+|...+..
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            35689999999999999998865

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.91  E-value=0.43  Score=38.55  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=21.2

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLY  224 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~  224 (438)
                      -++.+.|.++.|||+|+.+|-..++
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            4788999999999999999965543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=89.50  E-value=0.061  Score=47.44  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=22.6

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      ..|.|-|+-|+||||+++.+++.+..
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc
Confidence            35789999999999999999997753

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.41  E-value=0.49  Score=40.06  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=22.2

Q ss_pred             CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la~~l  223 (438)
                      ....+++.|++|||||+++.-+++..
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            45679999999999999998888753

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.37  E-value=0.038  Score=45.85  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=19.5

Q ss_pred             CCceEEecCCCCCHHHHHHHHHH
Q 013706          199 PPHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       199 ~~~~ll~GppGtGKT~la~~la~  221 (438)
                      .+..+|.|++|+|||+|..+|..
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC
T ss_pred             cceEEEECCCCccHHHHHHhhcc
Confidence            45678999999999999999854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.30  E-value=0.21  Score=45.25  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             CCCceEEecCCCCCHHHHHHHHH
Q 013706          198 RPPHMAFLGNPGTGKTMVARILG  220 (438)
Q Consensus       198 ~~~~~ll~GppGtGKT~la~~la  220 (438)
                      .+.+|.+.|.||+|||++..+|-
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            56789999999999999999985

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.29  E-value=0.21  Score=42.56  Aligned_cols=29  Identities=28%  Similarity=0.425  Sum_probs=24.1

Q ss_pred             CceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          200 PHMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      +-++++|.-|+||||+|-.+|..+...|.
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~   49 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRLADMGF   49 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            34678899999999999999998876653

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.32  E-value=0.087  Score=45.65  Aligned_cols=18  Identities=39%  Similarity=0.615  Sum_probs=15.2

Q ss_pred             CceEEecCCCCCHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVAR  217 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~  217 (438)
                      .-.||+|.+|||||||.-
T Consensus        15 ~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CEEEEEECTTSCHHHHTC
T ss_pred             CEEEEEccCCCCcccccc
Confidence            347999999999999763

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.37  E-value=0.11  Score=44.78  Aligned_cols=17  Identities=41%  Similarity=0.655  Sum_probs=14.8

Q ss_pred             CceEEecCCCCCHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVA  216 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la  216 (438)
                      .-.||+|-+|||||||.
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            34699999999999977

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=0.11  Score=42.96  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.0

Q ss_pred             CceEEecCCCCCHHHHHHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la~~la~  221 (438)
                      +-.++.|..|+||||+.+.+.+
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHH
T ss_pred             CEEEEeeCCCCCHHHHHHHHHh
Confidence            4578999999999999888766

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=87.05  E-value=0.099  Score=46.02  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=22.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .|.|.|+-|+||||+++.+++.+..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3778999999999999999997754

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=86.23  E-value=0.12  Score=45.41  Aligned_cols=25  Identities=28%  Similarity=0.272  Sum_probs=19.4

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYM  225 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~  225 (438)
                      .|.|-|+-|+||||+++.+++.+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCC
Confidence            4778999999999999999987754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.89  E-value=0.19  Score=39.91  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=18.3

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      .++|.|..|+|||++.+.+-.
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999987743

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.89  E-value=0.14  Score=44.35  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=18.9

Q ss_pred             ceEEecCCCCCHHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGRL  222 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~  222 (438)
                      --+|+||.|+|||++..||+-.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~   47 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWV   47 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3579999999999999999653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.66  E-value=0.18  Score=45.74  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.2

Q ss_pred             eEEecCCCCCHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l  223 (438)
                      -+|+||.|+|||++..||+-.|
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4799999999999999997544

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.14  E-value=0.18  Score=43.58  Aligned_cols=17  Identities=41%  Similarity=0.657  Sum_probs=15.1

Q ss_pred             CceEEecCCCCCHHHHH
Q 013706          200 PHMAFLGNPGTGKTMVA  216 (438)
Q Consensus       200 ~~~ll~GppGtGKT~la  216 (438)
                      .-.||+|-+|||||||.
T Consensus        15 d~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            34789999999999988

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.73  E-value=0.53  Score=39.66  Aligned_cols=28  Identities=29%  Similarity=0.400  Sum_probs=23.8

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      -|.++|.=||||||+|-.+|..|...|.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~   30 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGK   30 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTC
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCC
Confidence            4667999999999999999999976554

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=83.35  E-value=3.5  Score=30.61  Aligned_cols=22  Identities=18%  Similarity=-0.032  Sum_probs=15.0

Q ss_pred             eEEecCCCCCHHHHHHHHHHHH
Q 013706          202 MAFLGNPGTGKTMVARILGRLL  223 (438)
Q Consensus       202 ~ll~GppGtGKT~la~~la~~l  223 (438)
                      =++.||=.+|||+-.=..++.+
T Consensus        10 ~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1          10 EVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeccccHHHHHHHHHHHHh
Confidence            3578999999997444444433

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=83.00  E-value=0.31  Score=38.42  Aligned_cols=21  Identities=24%  Similarity=0.575  Sum_probs=19.0

Q ss_pred             ceEEecCCCCCHHHHHHHHHH
Q 013706          201 HMAFLGNPGTGKTMVARILGR  221 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~  221 (438)
                      +|-+.|+|++|||+|..+|.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            688999999999999999964

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.91  E-value=0.83  Score=37.18  Aligned_cols=26  Identities=38%  Similarity=0.475  Sum_probs=21.5

Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          203 AFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       203 ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      +..|..|+|||++|-.+|..+...+.
T Consensus         6 v~s~KGGvGKTtia~nlA~~la~~g~   31 (232)
T d1hyqa_           6 VASGKGGTGKTTITANLGVALAQLGH   31 (232)
T ss_dssp             EEESSSCSCHHHHHHHHHHHHHHTTC
T ss_pred             EECCCCCChHHHHHHHHHHHHHhCCC
Confidence            34588999999999999999976553

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.01  E-value=0.85  Score=38.80  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=23.5

Q ss_pred             ceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706          201 HMAFLGNPGTGKTMVARILGRLLYMVGI  228 (438)
Q Consensus       201 ~~ll~GppGtGKT~la~~la~~l~~~~~  228 (438)
                      -|.++|.=||||||+|--+|..|...|.
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~   31 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGK   31 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence            4567999999999999999988876654