Citrus Sinensis ID: 013763

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------
MSSNREEPLTFASSSPITVSDQLDNNSYHTDPSSHIGSASNSFQNDTFLSESSASINLDVEFGFSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLSAAVGARKPDMKRETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKNSEWLPGTPEKLKGWYVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQMGLSSEEQKKFLELRLQLNGETNMESNNKEVAGKQLNGDNITACRSQVDVMSCCQENGDTCCQNTQSTVFPEKIDNPDADERAMKVSTDKKRSSKKLVSRSSSSKGAFTRKVCAMPTWLESWEREDTYAVLAVACAVVSVAVAYSCYKQLS
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccEEEcccccccHHHHHHHHHHccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEEcccccccccEEEEEccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccc
cccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccHHHccccccccccccccEEEEEccccccccHHHHHcccccHHHHHHHHHHHcccccccccEEEccccccccccccccEEEEcccEEEccccHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccHccccHHHHHHHHHHHHHHccccccEEEEEEEEccccccccEEEEEcccccccccEEEEEEEccccHHHHHHHHHccccccHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccEEEEEEcccccccccEccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mssnreepltfassspitvsdqldnnsyhtdpsshigsasnsfqndtflsessasinldvefgfsrpefrlcqlagtvdfyERHVFVcyknpsvwpprieaaefdrlpRLLSaavgarkpdmkretrlticeghdgtetsngdvlifpdmiryrrlthfdvdTFVEEVLVknsewlpgtpeklkGWYVFVCShasrdrrcgvcgpplvsrfKEEIethgllgkvsvspcshigghkyagNVIIFGsnvngevtghwygyvapddvptllEQHIGKGEIVDWLwrgqmglssEEQKKFLELRLQLngetnmesnnkevagkqlngdnitacRSQVDVMsccqengdtccqntqstvfpekidnpdadeRAMKVStdkkrsskklvsrsssskgaftrkvcamptwleswereDTYAVLAVACAVVSVAVAYSCYKQLS
mssnreepltfassspitvsDQLDNNSYHTDPSSHIGSASNSFQNDTFLSESSASINLDVEFGFSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLSaavgarkpdmkreTRLTiceghdgtetsngdvliFPDMIRYRRLTHFDVDTFVEEVLVknsewlpgtpeklKGWYVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQMGLSSEEQKKFLELRLQLNGETNMESNNKEVAGKQLNGDNITACRSQVDVMSCCQENGDTccqntqstvfpekidnpdaderamkvstdkkrsskklvsrsssskgaftrkvcaMPTWLESWEREDTYAVLAVACAVVSVAVAYSCYKQLS
MSSNREEPLTFASSSPITVSDQLDNNSYHTDPSSHIGSASNSFQNDTFLSESSASINLDVEFGFSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLSAAVGARKPDMKRETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKNSEWLPGTPEKLKGWYVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQMGLSSEEQKKFLELRLQLNGETNMESNNKEVAGKQLNGDNITACRSQVDVMSCCQENGDTCCQNTQSTVFPEKIDNPDADERAMKVSTDkkrsskklvsrsssskGAFTRKVCAMPTWLESWEREDTYavlavacavvsvavaYSCYKQLS
*******************************************************INLDVEFGFSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLSAAVG**********RLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKNSEWLPGTPEKLKGWYVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQMGL************************************NITACRSQVDVMSCCQENGDTCCQN*******************************************FTRKVCAMPTWLESWEREDTYAVLAVACAVVSVAVAYSCYK***
*******************************************************INLDVEFGFSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLS*****************************GDVLIFPDMIRYRRLTHFDVDTFVEEVLVKNSEW*****EKLKGWYVFVCSHASR******CGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQMGLSSEEQKKFLELRLQLNGETNM*******************CRSQVDVM*CCQENGD*CCQN***********************************************VCAMPTWLESWEREDTYAVLAVACAVVSVAVAYSCYKQLS
*************SSPITVSDQLDNNSYHTDPSSHIGSASNSFQNDTFLSESSASINLDVEFGFSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLSAAVGARKPDMKRETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKNSEWLPGTPEKLKGWYVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQMGLSSEEQKKFLELRLQLNGETNMESNNKEVAGKQLNGDNITACRSQVDVMSCCQENGDTCCQNTQSTVFPEKIDNPDADER*************************FTRKVCAMPTWLESWEREDTYAVLAVACAVVSVAVAYSCYKQLS
*************************NSYH********************SESSASINLDVEFGFSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLSAAVGARKPDMKRETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKNSEWLPGTPEKLKGWYVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQMGLSSEEQKKFLELRLQL*****************************************************************MKVST****SSKKLVSRSSSSKGAFTRKVCAMPTWLESWEREDTYAVLAVACAVVSVAVAYSCYKQLS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
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MSSNREEPLTFASSSPITVSDQLDNNSYHTDPSSHIGSASNSFQNDTFLSESSASINLDVEFGFSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLSAAVGARKPDMKRETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKNSEWLPGTPEKLKGWYVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQMGLSSEEQKKFLELRLQLNGETNMESNNKEVAGKQLNGDNITACRSQVDVMSCCQENGDTCCQNTQSTVFPEKIDNPDADERAMKVSTDKKRSSKKLVSRSSSSKGAFTRKVCAMPTWLESWEREDTYAVLAVACAVVSVAVAYSCYKQLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query437 2.2.26 [Sep-21-2011]
C5DDQ4332 Altered inheritance of mi yes no 0.210 0.277 0.417 4e-15
Q6BPT6273 Altered inheritance of mi yes no 0.219 0.351 0.42 5e-15
P38281316 Actin patches distal prot yes no 0.311 0.430 0.324 4e-14
A5DK49282 Altered inheritance of mi N/A no 0.215 0.333 0.397 3e-13
C4Y1G7273 Altered inheritance of mi N/A no 0.212 0.340 0.424 3e-12
C5DZI5326 Altered inheritance of mi no no 0.215 0.288 0.380 4e-12
B5VP80311 Altered inheritance of mi N/A no 0.265 0.372 0.305 6e-12
B3LLK7311 Altered inheritance of mi N/A no 0.265 0.372 0.305 6e-12
Q04689311 Altered inheritance of mi no no 0.265 0.372 0.305 6e-12
C8ZEF8311 Altered inheritance of mi N/A no 0.265 0.372 0.305 6e-12
>sp|C5DDQ4|AIM32_LACTC Altered inheritance of mitochondria protein 32 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=AIM32 PE=3 SV=1 Back     alignment and function desciption
 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 60/103 (58%), Gaps = 11/103 (10%)

Query: 188 VFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKYAGNVIIF--- 244
           V VC H  RD RCG   P L+  F+ ++E       + ++  SHIGGHK+AGNVI +   
Sbjct: 230 VLVCGHHQRDERCGQIAPRLIKEFEAKVEE-----DLDLAIVSHIGGHKFAGNVIFYKFL 284

Query: 245 GSNVNGEVT--GHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRG 285
           G   +G+ T    W+G + P  VPTLLE H+G+ EI+   +RG
Sbjct: 285 GFEADGKATVDSLWFGKILPSAVPTLLE-HLGRNEIITPWFRG 326

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)
>sp|Q6BPT6|AIM32_DEBHA Altered inheritance of mitochondria protein 32 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=AIM32 PE=3 SV=2 Back     alignment and function description
>sp|P38281|APD1_YEAST Actin patches distal protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APD1 PE=1 SV=1 Back     alignment and function description
>sp|A5DK49|AIM32_PICGU Altered inheritance of mitochondria protein 32 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=AIM32 PE=3 SV=2 Back     alignment and function description
>sp|C4Y1G7|AIM32_CLAL4 Altered inheritance of mitochondria protein 32 OS=Clavispora lusitaniae (strain ATCC 42720) GN=AIM32 PE=3 SV=1 Back     alignment and function description
>sp|C5DZI5|AIM32_ZYGRC Altered inheritance of mitochondria protein 32 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=AIM32 PE=3 SV=1 Back     alignment and function description
>sp|B5VP80|AIM32_YEAS6 Altered inheritance of mitochondria protein 32 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AIM32 PE=3 SV=1 Back     alignment and function description
>sp|B3LLK7|AIM32_YEAS1 Altered inheritance of mitochondria protein 32 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=AIM32 PE=3 SV=1 Back     alignment and function description
>sp|Q04689|AIM32_YEAST Altered inheritance of mitochondria protein 32 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIM32 PE=3 SV=1 Back     alignment and function description
>sp|C8ZEF8|AIM32_YEAS8 Altered inheritance of mitochondria protein 32 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=AIM32 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
255563562446 conserved hypothetical protein [Ricinus 0.993 0.973 0.704 1e-170
225461959432 PREDICTED: uncharacterized protein LOC10 0.981 0.993 0.697 1e-166
296089940442 unnamed protein product [Vitis vinifera] 0.977 0.966 0.696 1e-164
224056481438 predicted protein [Populus trichocarpa] 0.981 0.979 0.703 1e-164
147822314464 hypothetical protein VITISV_000012 [Viti 0.981 0.924 0.652 1e-160
449462385437 PREDICTED: uncharacterized protein LOC10 0.972 0.972 0.664 1e-156
357495113430 Sucrase-like protein [Medicago truncatul 0.947 0.962 0.668 1e-150
356553497440 PREDICTED: uncharacterized protein LOC10 0.949 0.943 0.634 1e-150
357455755430 Sucrase-like protein [Medicago truncatul 0.945 0.960 0.669 1e-149
18416788443 Sucrase/ferredoxin-like protein [Arabido 0.977 0.963 0.637 1e-149
>gi|255563562|ref|XP_002522783.1| conserved hypothetical protein [Ricinus communis] gi|223538021|gb|EEF39634.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 315/447 (70%), Positives = 358/447 (80%), Gaps = 13/447 (2%)

Query: 1   MSSNREEPLTFASSSP------ITVSDQLDN---NSYHTDPSS--HIGSASNSFQNDTFL 49
           M+SNRE+ L++ +++P      IT SD LD    ++   DPSS  H+GSASNSFQND   
Sbjct: 1   MASNREDALSYTNNNPSSSSSPITGSDHLDATFLSAAPPDPSSGSHLGSASNSFQNDAGF 60

Query: 50  SESSASINLDVEFGFSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPR 109
              SAS + D+EFGFSRPEFR   LAGTV FY+RHVF+CYKNPSVWPPR+EAAEFDRLPR
Sbjct: 61  LTESASSSSDIEFGFSRPEFRQNPLAGTVQFYQRHVFLCYKNPSVWPPRVEAAEFDRLPR 120

Query: 110 LLSAAVGARKPDMKRETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVL 169
           LLSAAV ARK DMK+ETRLTICEGHDGTETSNGDVLIFPDM RYRRLTHFDVDTFVEEVL
Sbjct: 121 LLSAAVLARKGDMKKETRLTICEGHDGTETSNGDVLIFPDMTRYRRLTHFDVDTFVEEVL 180

Query: 170 VKNSEWLPGTPEKLKGWYVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPC 229
           VK  EWLPGTPE LKG YVFVC H SRDRRCG+CGP +V +FKEEIE HG  GKVSVSPC
Sbjct: 181 VKEGEWLPGTPETLKGSYVFVCCHGSRDRRCGLCGPAVVRKFKEEIELHGFQGKVSVSPC 240

Query: 230 SHIGGHKYAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQMGL 289
           SHIGGHKYAGNVIIFGS++NG +TGHWYGYV PDDVP LL+QHI KGEIVD LWRGQMGL
Sbjct: 241 SHIGGHKYAGNVIIFGSSMNGLITGHWYGYVTPDDVPILLDQHIEKGEIVDQLWRGQMGL 300

Query: 290 SSEEQKKFLELRLQLNGETNMESNNKEVAGKQLNGDNITACRSQVDVMSCCQENGDTCCQ 349
           S EEQ K  ELRLQLNGET++  N KE+   Q +  +  A RS V+ M+CCQ+NG + C 
Sbjct: 301 SEEEQIKSQELRLQLNGETDVTRNIKELTQSQEDEASNAAIRSDVEFMACCQQNGKSSC- 359

Query: 350 NTQSTVFPEKIDNPDADERAMKVSTDKKRSSKKLVSRSSSSKGAFTRKVCAMPTWLESWE 409
             Q  V   K +N DA+ + +KVS +KK+SSK+L+SR +S KG  TR+VCAMPTWLESWE
Sbjct: 360 -CQYPVSKHKEENLDANNKGVKVSPEKKKSSKRLLSRINSGKGMSTRRVCAMPTWLESWE 418

Query: 410 REDTYAVLAVACAVVSVAVAYSCYKQL 436
           REDTYA LAV CAVVSVAVAY+CYKQL
Sbjct: 419 REDTYAALAVVCAVVSVAVAYNCYKQL 445

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461959|ref|XP_002270063.1| PREDICTED: uncharacterized protein LOC100258311 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089940|emb|CBI39759.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224056481|ref|XP_002298877.1| predicted protein [Populus trichocarpa] gi|222846135|gb|EEE83682.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147822314|emb|CAN64060.1| hypothetical protein VITISV_000012 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462385|ref|XP_004148921.1| PREDICTED: uncharacterized protein LOC101211536 [Cucumis sativus] gi|449484974|ref|XP_004157034.1| PREDICTED: uncharacterized protein LOC101223544 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357495113|ref|XP_003617845.1| Sucrase-like protein [Medicago truncatula] gi|355519180|gb|AET00804.1| Sucrase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356553497|ref|XP_003545092.1| PREDICTED: uncharacterized protein LOC100816329 [Glycine max] Back     alignment and taxonomy information
>gi|357455755|ref|XP_003598158.1| Sucrase-like protein [Medicago truncatula] gi|355487206|gb|AES68409.1| Sucrase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|18416788|ref|NP_567751.1| Sucrase/ferredoxin-like protein [Arabidopsis thaliana] gi|21536780|gb|AAM61112.1| sucrase-like protein [Arabidopsis thaliana] gi|332659827|gb|AEE85227.1| Sucrase/ferredoxin-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query437
TAIR|locus:2133842443 AT4G26620 "AT4G26620" [Arabido 0.974 0.961 0.608 1e-139
TAIR|locus:2178383413 AT5G55900 "AT5G55900" [Arabido 0.933 0.987 0.554 1.9e-115
TAIR|locus:2091433379 AT3G27570 "AT3G27570" [Arabido 0.640 0.738 0.484 4.2e-71
TAIR|locus:2168733333 AT5G40510 "AT5G40510" [Arabido 0.629 0.825 0.459 4e-67
DICTYBASE|DDB_G0270420321 DDB_G0270420 "sucraseferredoxi 0.508 0.691 0.327 2.7e-29
CGD|CAL0000907330 orf19.612 [Candida albicans (t 0.279 0.369 0.341 1.1e-13
UNIPROTKB|Q59X65330 CaO19.612 "Putative uncharacte 0.279 0.369 0.341 1.1e-13
SGD|S000004514311 AIM32 "Putative protein of unk 0.233 0.327 0.339 6.1e-11
SGD|S000000355316 APD1 "Protein of unknown funct 0.297 0.411 0.339 8.3e-11
CGD|CAL0003160308 orf19.158 [Candida albicans (t 0.306 0.435 0.290 1.4e-09
TAIR|locus:2133842 AT4G26620 "AT4G26620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1367 (486.3 bits), Expect = 1.0e-139, P = 1.0e-139
 Identities = 271/445 (60%), Positives = 318/445 (71%)

Query:     4 NREEPLTFAS-----SSPITVSDQLDNNSYHTDPSSHIGSASNSFQNDTFLSESSA-SIN 57
             +R++PL+F S     SSP+TVSD LDN  +  +P+S  GS    FQ+++ L      SIN
Sbjct:     6 DRDDPLSFTSNPSTASSPVTVSDYLDN--FLGEPTSRSGS----FQSESLLGGGGGESIN 59

Query:    58 LDVEFGFSRPEFRLCQLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLSAAVGA 117
              D +FGF+RP+FR  QLAGTV FYERHVF+CYK PSVWP RIEAAEFDRLPRLLSAAV A
Sbjct:    60 -DADFGFARPDFRSEQLAGTVQFYERHVFLCYKKPSVWPARIEAAEFDRLPRLLSAAVSA 118

Query:   118 RKPDMKRETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKNSEWLP 177
             RK  MK+ETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDV+TFVEEVLVK+ EWLP
Sbjct:   119 RKGSMKKETRLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVETFVEEVLVKDGEWLP 178

Query:   178 GTPEKLKGWYVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKY 237
             G PE LKG YVFVCSH SRDRRCGVCGP LVSRF+EE+E HGL GKVS+SPCSHIGGHKY
Sbjct:   179 GNPELLKGSYVFVCSHGSRDRRCGVCGPSLVSRFREELEFHGLQGKVSISPCSHIGGHKY 238

Query:   238 AGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQMGLSSEEQKKF 297
             AGNVII+ SN+N EVTGHWYGYV P+DVP LLEQHI KGEIVD LWRG+MGLS E+QKK 
Sbjct:   239 AGNVIIYRSNINREVTGHWYGYVTPEDVPILLEQHINKGEIVDRLWRGEMGLSEEDQKKT 298

Query:   298 LELRLQLNGETN-MESNNKEVAGKQLNGDNITACRSQV-DVMSCCQENGDT--CCQNTQS 353
              E R QLNG  + ++ N K      ++  +++ C+S+  +   CCQ+NG++  CCQ+  +
Sbjct:   299 QEGRFQLNGTVHSVKINGKVSQESSVHNADVSCCQSRAAEPNGCCQQNGNSSSCCQDDTT 358

Query:   354 TVFP--EKIDNPDADERAMKVSTDXXXXXXXXXXXXXXXXGAFTRKVCAMPTWLESWERE 411
              +       DN    E   +  T                 G+ TRKVC +PTWLESWERE
Sbjct:   359 LMLSLGTSEDNQLESENNTEKLTPGRKIAEKTFFRINSDKGSSTRKVCGIPTWLESWERE 418

Query:   412 DTYXXXXXXXXXXXXXXXYSCYKQL 436
             DTY               Y+CYKQL
Sbjct:   419 DTYAALAVVCAAASVAVAYTCYKQL 443
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005829 "cytosol" evidence=IDA
GO:0010048 "vernalization response" evidence=RCA
TAIR|locus:2178383 AT5G55900 "AT5G55900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091433 AT3G27570 "AT3G27570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168733 AT5G40510 "AT5G40510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270420 DDB_G0270420 "sucraseferredoxin-like family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0000907 orf19.612 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59X65 CaO19.612 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
SGD|S000004514 AIM32 "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
SGD|S000000355 APD1 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0003160 orf19.158 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033400001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (432 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
pfam06999218 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like 1e-76
cd0306297 cd03062, TRX_Fd_Sucrase, TRX-like [2Fe-2S] Ferredo 2e-39
cd0298077 cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2F 3e-18
COG4759316 COG4759, COG4759, Uncharacterized protein conserve 2e-05
>gnl|CDD|219260 pfam06999, Suc_Fer-like, Sucrase/ferredoxin-like Back     alignment and domain information 
 Score =  237 bits (606), Expect = 1e-76
 Identities = 85/226 (37%), Positives = 111/226 (49%), Gaps = 21/226 (9%)

Query: 74  LAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLSAAVGARKPDMKRETRLTICEG 133
           L GT   Y+RH+ V    P  WP          + + LSA + ARK  +   T LTI  G
Sbjct: 2   LIGTAKTYDRHLLVETS-PGPWPHEACD--EKDVLQGLSALLAARKKALGVRTPLTIAPG 58

Query: 134 HDG-TETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVK-----------NSEWLPGTPE 181
            +  +  S GDVLI PD I  +    F    FVE++L               + L G  E
Sbjct: 59  REAVSYGSKGDVLILPDFIPIKLFAEFLKQEFVEDLLDLDLPALGPGKLLAFDDLEGGAE 118

Query: 182 KLKGWYVFVCSHASRDRRCGVCGPPLVSRFKEEIETHGLLGKVSVSPCSHIGGHKYAGNV 241
            +    + VC+H  RD+RCG+ GPPL   F+ E+   GL     V  CSHIGGHK+A NV
Sbjct: 119 DIHDRIILVCTHGKRDKRCGITGPPLYKEFRAELADLGLYRDR-VWECSHIGGHKFAPNV 177

Query: 242 IIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQM 287
           IIF        TG WYG V P+ VP ++   IG G+I+  L+RG  
Sbjct: 178 IIF----KKTPTGIWYGRVTPEHVPAIV-DEIGDGKILKELYRGWG 218

This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity. Length = 218
>gnl|CDD|239360 cd03062, TRX_Fd_Sucrase, TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity Back     alignment and domain information
>gnl|CDD|239278 cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE) Back     alignment and domain information
>gnl|CDD|227101 COG4759, COG4759, Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 437
PF06999230 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: I 100.0
COG4759316 Uncharacterized protein conserved in bacteria cont 99.98
cd0306297 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) f 99.93
cd0298077 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferr 99.53
cd0306392 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) 99.5
COG341164 Ferredoxin [Energy production and conversion] 99.33
cd0306480 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) fami 99.26
cd0308380 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) 99.03
cd0308180 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin 98.99
PF01257145 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredo 98.95
PRK07539154 NADH dehydrogenase subunit E; Validated 98.94
TIGR01958148 nuoE_fam NADH-quinone oxidoreductase, E subunit. T 98.82
cd0308272 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxi 98.47
PRK05988156 formate dehydrogenase subunit gamma; Validated 98.29
PRK07571169 bidirectional hydrogenase complex protein HoxE; Re 98.25
PRK12373400 NADH dehydrogenase subunit E; Provisional 98.16
COG1905160 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit 98.03
PF07845116 DUF1636: Protein of unknown function (DUF1636); In 97.38
KOG3196233 consensus NADH:ubiquinone oxidoreductase, NDUFV2/2 97.37
cd0306297 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) f 94.09
COG5469143 Predicted metal-binding protein [Function unknown] 94.07
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-45  Score=351.64  Aligned_cols=209  Identities=39%  Similarity=0.684  Sum_probs=175.1

Q ss_pred             CCCccccccceEEEEEecCCCCCchhhhhhcCCChhHHHHHHHhccCCCCCcceeeeeccCCCCC-------CCCCceEE
Q 013763           73 QLAGTVDFYERHVFVCYKNPSVWPPRIEAAEFDRLPRLLSAAVGARKPDMKRETRLTICEGHDGT-------ETSNGDVL  145 (437)
Q Consensus        73 pL~GTa~~y~rHl~L~~e~p~~Wps~iE~~~~~~Lp~~L~aaIk~~k~~l~~~~~L~I~~g~~g~-------~~s~~~VL  145 (437)
                      ||+|||+.|.+||+|++ ++.+||++++++. +.+++.|.+++++.....+.+..++++++....       ....++||
T Consensus         1 pL~Gta~~~~~hvli~~-~~~~W~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   78 (230)
T PF06999_consen    1 PLIGTAPPYDRHVLIET-GPGDWPSDALDSK-SSLPQALSAALKARKKKLGVRFLLIRRPGRISNSSLPEPSRPKPGDVL   78 (230)
T ss_pred             CcCcccCcCcEEEEEEc-CCCCCCcchhcCC-cchHHHHHHHHHHhhcccCccccceecCCcccccccccccCCCCceEE
Confidence            79999999999999988 7899999988643 478999999998887777666677777665422       34556899


Q ss_pred             EecCcEEEccCCCCCHHHHHHHHhhcCCC--------------CCCCCCCCCCccEEEEccCCCCCCCcccCcHHHHHHH
Q 013763          146 IFPDMIRYRRLTHFDVDTFVEEVLVKNSE--------------WLPGTPEKLKGWYVFVCSHASRDRRCGVCGPPLVSRF  211 (437)
Q Consensus       146 IfPd~~~~~~l~~~dv~~fv~~~L~~d~~--------------~~p~~pe~l~~~~ILVCtHg~RD~rCGi~G~~L~~aL  211 (437)
                      |||+|++++.++.....+|+..++..+..              ..+...+.+..++||||||++||+|||++|++|+++|
T Consensus        79 v~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVCtHg~RD~rCg~~Gp~l~~~l  158 (230)
T PF06999_consen   79 VFPDFKIYRFVTRSNVQEFVEDLLDLDLPAVTALPRQSSAAPDKLPFPREPPDKPLILVCTHGKRDKRCGILGPPLAREL  158 (230)
T ss_pred             EEcccEEeccccchhhHHHHHHhccccccccccccCccccccccCCCCcccCCCCEEEEcCCCCcCCchhcccHHHHHHH
Confidence            99999999988788888888877766543              1112234567899999999999999999999999999


Q ss_pred             HHHHHHcCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCcccEEEeccCCCCHHHHHHHHHhCCeeccceecccC
Q 013763          212 KEEIETHGLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVDWLWRGQM  287 (437)
Q Consensus       212 ~eel~~~GL~~~V~V~~tSHlGGHcfAGnVIv~~P~~~g~~~GvwYGrVtPedV~~IVeehL~~G~iv~~l~RG~~  287 (437)
                      ++++.+++|..++ ||+|||+|||+||||||+|.   ..+++|+|||||+|++|+.||++++.+|+++.++|||+|
T Consensus       159 ~~~~~~~~l~~~~-V~~iSHiGGHkfAgNvIiy~---~~~p~g~wyGrv~p~~v~~iv~~t~~~g~vi~~~~RG~~  230 (230)
T PF06999_consen  159 EKELRERGLSRDR-VWEISHIGGHKFAGNVIIYS---KPKPDGIWYGRVTPEDVEGIVDATILDGKVIPELYRGRM  230 (230)
T ss_pred             HHHhhhcCCccce-EEEecccccceecCeEEEEe---cCCCcEEEEEeeCHHHHHHHHHHHHhCCcCcCccCcCCC
Confidence            9999999997544 99999999999999999992   011289999999999999999998999999999999997

>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity Back     alignment and domain information
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE) Back     alignment and domain information
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH Back     alignment and domain information
>COG3411 Ferredoxin [Energy production and conversion] Back     alignment and domain information
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16 Back     alignment and domain information
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH Back     alignment and domain information
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1 Back     alignment and domain information
>PRK07539 NADH dehydrogenase subunit E; Validated Back     alignment and domain information
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit Back     alignment and domain information
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens Back     alignment and domain information
>PRK05988 formate dehydrogenase subunit gamma; Validated Back     alignment and domain information
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed Back     alignment and domain information
>PRK12373 NADH dehydrogenase subunit E; Provisional Back     alignment and domain information
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion] Back     alignment and domain information
>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins Back     alignment and domain information
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion] Back     alignment and domain information
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity Back     alignment and domain information
>COG5469 Predicted metal-binding protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query437
1m2d_A110 [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2 3e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Length = 110 Back     alignment and structure
 Score = 76.0 bits (187), Expect = 3e-17
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 13/99 (13%)

Query: 188 VFVCSH----ASRDRRCGVCG-PPLVSRFKEEIETHGLL-GKVSVSPCSHIGGHKYAGNV 241
           VFVC            C   G   +   F E+I+T   L     ++P   +        V
Sbjct: 6   VFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVV 65

Query: 242 IIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVD 280
           +++         G WYG V P+DV  ++E+H+  GE V+
Sbjct: 66  VVYPD-------GVWYGQVKPEDVDEIVEKHLKGGEPVE 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
1m2d_A110 [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2 99.7
2auv_A85 Potential NAD-reducing hydrogenase subunit; thiore 99.31
3i9v_2181 NADH-quinone oxidoreductase subunit 2; electron tr 99.14
1m2d_A110 [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2 81.36
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Back     alignment and structure
Probab=99.70  E-value=2.1e-17  Score=140.82  Aligned_cols=96  Identities=29%  Similarity=0.514  Sum_probs=83.3

Q ss_pred             ccEEEEccCCCCCC----CcccCc-HHHHHHHHHHHHHc-CCCCcEEEEeecCCCCcccCccEEEEcCCCCCCcccEEEe
Q 013763          185 GWYVFVCSHASRDR----RCGVCG-PPLVSRFKEEIETH-GLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYG  258 (437)
Q Consensus       185 ~~~ILVCtHg~RD~----rCGi~G-~~L~~aL~eel~~~-GL~~~V~V~~tSHlGGHcfAGnVIv~~P~~~g~~~GvwYG  258 (437)
                      +.+|+||++.+||.    +|...| ..|+++|+++|..+ |+.+.|.|..++|+ |.|..||+|+++|      +|+|||
T Consensus         3 ~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~Cl-G~C~~gP~v~V~P------~~~~y~   75 (110)
T 1m2d_A            3 FKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCM-NASMMGPVVVVYP------DGVWYG   75 (110)
T ss_dssp             CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCC-SCGGGCSCEEEET------TTEEEC
T ss_pred             ceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCC-CccCCCCEEEEEe------CCEEEe
Confidence            47899999998884    899998 79999999999998 87767999999999 5566666666666      689999


Q ss_pred             ccCCCCHHHHHHHHHhCCeeccceecccC
Q 013763          259 YVAPDDVPTLLEQHIGKGEIVDWLWRGQM  287 (437)
Q Consensus       259 rVtPedV~~IVeehL~~G~iv~~l~RG~~  287 (437)
                      +|||++|++||++||.+|+++++|++...
T Consensus        76 ~vt~e~v~~il~~~l~~g~~v~~l~~~~~  104 (110)
T 1m2d_A           76 QVKPEDVDEIVEKHLKGGEPVERLVISKG  104 (110)
T ss_dssp             SCCGGGHHHHHHHTTTTSCCCGGGEEEC-
T ss_pred             cCCHHHHHHHHHHHHHCCcChHHhcccCc
Confidence            99999999999999999999999987653
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans} Back     alignment and structure
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2* Back     alignment and structure
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 437
d1m2da_101 c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin 6e-13
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Length = 101 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

 Score = 62.3 bits (151), Expect = 6e-13
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 13/100 (13%)

Query: 187 YVFVCSH----ASRDRRCGVCG-PPLVSRFKEEIETHGLL-GKVSVSPCSHIGGHKYAGN 240
           +VFVC            C   G   +   F E+I+T   L     ++P   +        
Sbjct: 3   HVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPV 62

Query: 241 VIIFGSNVNGEVTGHWYGYVAPDDVPTLLEQHIGKGEIVD 280
           V+++           WYG V P+DV  ++E+H+  GE V+
Sbjct: 63  VVVYPDG-------VWYGQVKPEDVDEIVEKHLKGGEPVE 95

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query437
d1m2da_101 Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolic 99.82
d2fug21178 NADH-quinone oxidoreductase chain 2, NQO2 {Thermus 98.1
d1m2da_101 Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolic 91.53
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.82  E-value=4.2e-21  Score=160.00  Aligned_cols=93  Identities=30%  Similarity=0.556  Sum_probs=82.4

Q ss_pred             cEEEEccCCC----CCCCcccCc-HHHHHHHHHHHHH-cCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCcccEEEec
Q 013763          186 WYVFVCSHAS----RDRRCGVCG-PPLVSRFKEEIET-HGLLGKVSVSPCSHIGGHKYAGNVIIFGSNVNGEVTGHWYGY  259 (437)
Q Consensus       186 ~~ILVCtHg~----RD~rCGi~G-~~L~~aL~eel~~-~GL~~~V~V~~tSHlGGHcfAGnVIv~~P~~~g~~~GvwYGr  259 (437)
                      .|||||+|.+    ++.+|+..| .+|+++|+++|+. .+++++|.|.+|+|+ |.|..||+|+++|      +|+||++
T Consensus         2 rHi~VC~~~r~~~~~~~~C~~~G~~~v~~~l~~~l~~~~~~~~~v~v~~tgCl-G~C~~gP~v~i~P------~~~~Y~~   74 (101)
T d1m2da_           2 KHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCM-NASMMGPVVVVYP------DGVWYGQ   74 (101)
T ss_dssp             EEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCC-SCGGGCSCEEEET------TTEEECS
T ss_pred             CEEEEeCCCCCCCCCCCcchhcCHHHHHHHHHHHhhhhcCCCCcEEEEEccCC-cccCCCceEEEcC------CccEEec
Confidence            5899999965    456899998 7999999999975 456678999999999 7788888888887      7899999


Q ss_pred             cCCCCHHHHHHHHHhCCeeccceecc
Q 013763          260 VAPDDVPTLLEQHIGKGEIVDWLWRG  285 (437)
Q Consensus       260 VtPedV~~IVeehL~~G~iv~~l~RG  285 (437)
                      |+|++|++||++||.+|++|++|+..
T Consensus        75 v~~e~v~~Iv~~hl~~g~~ve~ll~~  100 (101)
T d1m2da_          75 VKPEDVDEIVEKHLKGGEPVERLVIS  100 (101)
T ss_dssp             CCGGGHHHHHHHTTTTSCCCGGGEEE
T ss_pred             CCHHHHHHHHHHHHHCCcCchHhccc
Confidence            99999999999999999999999864
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure