Citrus Sinensis ID: 013775

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------

MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLGVPEIPVVQQTTDPKPSFSLFSAIKQASEAKAARQASASVTAEQPKSTEQKISSSAVLSQRIRSLEKQVKGRKKNKKR

cccccccccccccccccccccccEEEccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHHHccc

ccHHHHHHHHHHHHHccccccccEEEEccccccccccEccccccccEEcHHHHHHccccccccccHHHEEEEEEEEEEccccccEEEEEcccccccccccccEEEEEEEEcccHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccc

mayrrsltTRATLIARaynpsfnyiiydhdhkqkspdetlsrtnihsfiqsrsfgnslnnsyglgnffhgqrvsqfslvpsvgSAFCRYMSttvgegadkiELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMqdkamdpmavADGQKRMQNLFKeygvhpltplkglfiqgpvFISFFLAISNMAekvpsfknggafwftdlstpdsfyilpiLTGLSFLITVECNmqeglegnpaavTMKNISRGFavlsipltmtfpKAIFCYWITSNFFSLVYGLVLkvpgvkkmlgvpeipvvqqttdpkpsfsLFSAIKQASEAKAARQAsasvtaeqpksteqkiSSSAVLSQRIRSLEKQVKGRKKNKKR

mayrrslttrATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLinqlkstskltlmrPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLGVPEIPVVQQTTDPKPSFSLFSAIKQASEAKAARQASasvtaeqpksteqkisssavlsqrirslekqvkgrkknkkr

MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRsfgnslnnsyglgnfFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQapavnevaiaaaDSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLGVPEIPVVQQTTDPKPSFSLFSAIKQaseakaarqasasvtaEQPKSTEQKISSSAVLSQRIRSLEkqvkgrkknkkR

*******TTRATLIARAYNPSFNYIIYDH***************IHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKST**********************************QNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLGVPEIPVV**********************************************************************

**************ARAYNPSFNY***********************FIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSA*********************VADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLE***********************QNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLIT*******************NISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLG*****************************************************************************

********TRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLGVPEIPVVQQTTDPKPSFSLFSAIK**********************************QRIRSLE************

*AYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLGVPE*******************************************************Q****L*KQVKG*******

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		436	2.2.26 [Sep-21-2011]
Q42191		429	Mitochondrial inner membr	yes	no	0.972	0.988	0.546	1e-135
Q9SKD3		431	Mitochondrial inner membr	no	no	0.963	0.974	0.490	1e-108
O43092		409	Mitochondrial inner membr	yes	no	0.532	0.567	0.360	4e-36
Q8BGA9		433	Mitochondrial inner membr	yes	no	0.591	0.595	0.313	4e-33
Q15070		435	Mitochondrial inner membr	no	no	0.580	0.581	0.305	4e-33
Q3SYV3		441	Mitochondrial inner membr	yes	no	0.619	0.612	0.286	2e-29
O14300		374	Mitochondrial inner membr	no	no	0.674	0.786	0.319	9e-28
O13375		371	Mitochondrial inner membr	N/A	no	0.708	0.832	0.256	1e-22
Q8N8Q8		333	Mitochondrial inner membr	no	no	0.511	0.669	0.295	5e-21
P39952		402	Mitochondrial inner membr	yes	no	0.582	0.631	0.258	5e-20

>sp\|Q42191\|OXA1_ARATH Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2	Back alignment and function desciption

 Score =  483 bits (1242), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/439 (54%), Positives = 322/439 (73%), Gaps = 15/439 (3%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNSLNN 60
           MA+R++L+ R+ L AR   P ++ I  + DH++ S  +  S+ + HSF+  RS  NS + 
Sbjct: 1   MAFRQTLSIRSRLFARRNQPVYHIIPRESDHERDSFCQETSQRSYHSFLHQRSVNNS-DF 59

Query: 61  SYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAI- 119
           S   G   H        L P+ G AF RYMS+  G G++KI ++SD+A+V T++T+Q + 
Sbjct: 60  SKVSGGSLH------LPLAPTSGFAFYRYMSSAPGVGSEKIGVMSDIAEVITDSTLQDVP 113

Query: 120 ANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLIN 179
           A  A AV+EV +AAADSF P+AALQ  ID +H FTGF WWASI+V T+LIR++TVPLLI 
Sbjct: 114 AQAAAAVSEVTLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIK 173

Query: 180 QLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQ 239
           Q+K T+KL LMRPRLE I+++MQ+K MD + +A+GQK+M+NLFKEYGV P TP+KG+FIQ
Sbjct: 174 QMKDTTKLALMRPRLESIREEMQNKGMDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMFIQ 233

Query: 240 GPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG 299
           GP+FI FFLAI NMAEKVPSF+ GGA WFTDL+TPDS YILP++TGL+FLITVECN QEG
Sbjct: 234 GPLFICFFLAIRNMAEKVPSFQTGGALWFTDLTTPDSLYILPVITGLTFLITVECNAQEG 293

Query: 300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLG 359
           +EGNP A T+K + R FA+L++P+TM+FP+AIFCYWITSN FSL+YGLV+K P VKKML 
Sbjct: 294 MEGNPMAGTVKTVCRVFALLTVPMTMSFPQAIFCYWITSNLFSLMYGLVIKRPQVKKMLR 353

Query: 360 VPEIPVVQQTTDPKPSFSLFSAIKQASEAKAARQASASVTAEQPKSTEQKISSSAV--LS 417
           +P++P        +PSF LFSA+K+    KA  Q       E P     ++SS+++  +S
Sbjct: 354 IPDLPPPPPGQ--QPSFDLFSALKK---MKAMTQDHTQNQIEPPSPVNPRLSSTSLSPVS 408

Query: 418 QRIRSLEKQVKGRKKNKKR 436
           +R+++LE QVKGRKKN  +
Sbjct: 409 KRLKALESQVKGRKKNSSK 427

Required for the insertion of integral membrane proteins into the mitochondrial inner membrane. Essential for activity and assembly of cytochrome c oxidase.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SKD3\|OXA1L_ARATH Mitochondrial inner membrane protein OXA1-like OS=Arabidopsis thaliana GN=OXA1L PE=2 SV=1	Back alignment and function description

>sp\|O43092\|OXA12_SCHPO Mitochondrial inner membrane protein oxa1-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa102 PE=2 SV=2	Back alignment and function description

>sp\|Q8BGA9\|OXA1L_MOUSE Mitochondrial inner membrane protein OXA1L OS=Mus musculus GN=Oxa1l PE=2 SV=1	Back alignment and function description

>sp\|Q15070\|OXA1L_HUMAN Mitochondrial inner membrane protein OXA1L OS=Homo sapiens GN=OXA1L PE=1 SV=3	Back alignment and function description

>sp\|Q3SYV3\|OXA1L_BOVIN Mitochondrial inner membrane protein OXA1L OS=Bos taurus GN=OXA1L PE=2 SV=1	Back alignment and function description

>sp\|O14300\|OXA11_SCHPO Mitochondrial inner membrane protein oxa1-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oxa101 PE=2 SV=1	Back alignment and function description

>sp\|O13375\|OXA1_SACSE Mitochondrial inner membrane protein OXA1 OS=Saccharomyces servazzii GN=OXA1 PE=3 SV=1	Back alignment and function description

>sp\|Q8N8Q8\|COX18_HUMAN Mitochondrial inner membrane protein COX18 OS=Homo sapiens GN=COX18 PE=2 SV=1	Back alignment and function description

>sp\|P39952\|OXA1_YEAST Mitochondrial inner membrane protein OXA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OXA1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		436
224053781		459	inner membrane protein [Populus trichoca	0.990	0.941	0.636	1e-164
356548765		431	PREDICTED: mitochondrial inner membrane	0.979	0.990	0.642	1e-161
356521711		430	PREDICTED: mitochondrial inner membrane	0.981	0.995	0.634	1e-157
356521323		431	PREDICTED: mitochondrial inner membrane	0.979	0.990	0.646	1e-155
449464056		446	PREDICTED: mitochondrial inner membrane	0.977	0.955	0.610	1e-149
255537783		421	cytochrome oxidase biogenesis protein, p	0.951	0.985	0.601	1e-141
297797165		429	hypothetical protein ARALYDRAFT_496379 [	0.972	0.988	0.553	1e-137
359474092		458	PREDICTED: mitochondrial inner membrane	0.983	0.936	0.579	1e-136
297742331		443	unnamed protein product [Vitis vinifera]	0.979	0.963	0.592	1e-136
357504211		446	Mitochondrial inner membrane protein OXA	0.977	0.955	0.584	1e-135

>gi\|224053781\|ref\|XP_002297976.1\| inner membrane protein [Populus trichocarpa] gi\|222845234\|gb\|EEE82781.1\| inner membrane protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 294/462 (63%), Positives = 346/462 (74%), Gaps = 30/462 (6%)

Query: 1   MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRSFGNS--- 57
           MAY RSL+TRA ++ R YN SF+YI++D D K  S +E  S   + +  Q RSFG+S   
Sbjct: 1   MAYVRSLSTRANIVRRRYNASFSYILHDDDRKHNSIEEGPSSKGMSNLFQQRSFGSSRKR 60

Query: 58  LNNSYGLGNFFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQ 117
            +N+  +  FFH +R    SL PS+G +FCR MST +G G++ IELI+DVADV T+TT +
Sbjct: 61  FDNNLAVFGFFHNRRCLDLSLSPSIGVSFCRDMST-IGGGSENIELINDVADVLTDTTFE 119

Query: 118 AIANQAPAVNEVAIAAADSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLL 177
           A++ QAP VNEVAIAAADS+ PVAALQH IDA+H+FTGFNWWASIIVTTLLIR ATVPLL
Sbjct: 120 AVSAQAPVVNEVAIAAADSYFPVAALQHVIDAVHSFTGFNWWASIIVTTLLIRGATVPLL 179

Query: 178 INQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLF 237
           INQLK+T+KLTLMRP LEEI+Q M DKAMDPMA+A+GQK+M+ LFKEYGV PLTPLKGLF
Sbjct: 180 INQLKATTKLTLMRPHLEEIRQQMSDKAMDPMALAEGQKQMKKLFKEYGVSPLTPLKGLF 239

Query: 238 IQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQ 297
           IQGP+F+SFFLAISNM EKVPSFK+GGA+WF DL+TPDS YILPILTGL+F ITVECNMQ
Sbjct: 240 IQGPIFVSFFLAISNMTEKVPSFKSGGAYWFLDLTTPDSLYILPILTGLTFWITVECNMQ 299

Query: 298 EGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGL---------- 347
           EGLEGNP A TMK +SR FAV S+PLTM FP AIFCYW+TSN FSL YGL          
Sbjct: 300 EGLEGNPIAATMKKVSRVFAVASVPLTMGFPNAIFCYWVTSNLFSLFYGLGNLGSFNVQQ 359

Query: 348 -----------VLKVPGVKKMLGVPEIPVVQQTTDPKPSFSLFSAIKQASEAKAARQASA 396
                       LK PGVKK LG+PEIPV   +T P  SF L  A+KQ     AARQ  A
Sbjct: 360 LLDFCYFMNQQTLKAPGVKKFLGLPEIPVAPASTTPPSSFDLLEALKQQV---AARQEPA 416

Query: 397 SVTAEQPKSTE--QKISSSAVLSQRIRSLEKQVKGRKKNKKR 436
           S    +P S     +IS ++VLSQR+RSLEKQVKGRKKN  +
Sbjct: 417 SPLPVEPSSKPGVPRISPASVLSQRLRSLEKQVKGRKKNNNK 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356548765\|ref\|XP_003542770.1\| PREDICTED: mitochondrial inner membrane protein OXA1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356521711\|ref\|XP_003529495.1\| PREDICTED: mitochondrial inner membrane protein OXA1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356521323\|ref\|XP_003529306.1\| PREDICTED: mitochondrial inner membrane protein OXA1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449464056\|ref\|XP_004149745.1\| PREDICTED: mitochondrial inner membrane protein OXA1-like [Cucumis sativus] gi\|449505074\|ref\|XP_004162368.1\| PREDICTED: mitochondrial inner membrane protein OXA1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255537783\|ref\|XP_002509958.1\| cytochrome oxidase biogenesis protein, putative [Ricinus communis] gi\|223549857\|gb\|EEF51345.1\| cytochrome oxidase biogenesis protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297797165\|ref\|XP_002866467.1\| hypothetical protein ARALYDRAFT_496379 [Arabidopsis lyrata subsp. lyrata] gi\|297312302\|gb\|EFH42726.1\| hypothetical protein ARALYDRAFT_496379 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|359474092\|ref\|XP_002270313.2\| PREDICTED: mitochondrial inner membrane protein OXA1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297742331\|emb\|CBI34480.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357504211\|ref\|XP_003622394.1\| Mitochondrial inner membrane protein OXA1 [Medicago truncatula] gi\|355497409\|gb\|AES78612.1\| Mitochondrial inner membrane protein OXA1 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		436
TAIR\|locus:2174068		429	OXA1 "homolog of yeast oxidase	0.944	0.960	0.505	6.8e-111
TAIR\|locus:2039134		431	OXA1L "AT2G46470" [Arabidopsis	0.938	0.948	0.470	2.7e-93
POMBASE\|SPBP4H10.03		409	oxa102 "mitochondrial inner me	0.520	0.555	0.363	4.4e-36
ZFIN\|ZDB-GENE-071004-49		469	oxa1l "oxidase (cytochrome c)	0.557	0.518	0.332	1.5e-35
FB\|FBgn0027615		441	CG6404 [Drosophila melanogaste	0.545	0.539	0.314	6.7e-33
UNIPROTKB\|E7EVY0		408	OXA1L "Mitochondrial inner mem	0.580	0.620	0.293	1.8e-32
UNIPROTKB\|J3KNA0		495	OXA1L "Mitochondrial inner mem	0.580	0.511	0.293	1.8e-32
UNIPROTKB\|Q15070		435	OXA1L "Mitochondrial inner mem	0.580	0.581	0.293	1.8e-32
MGI\|MGI:1916339		433	Oxa1l "oxidase assembly 1-like	0.518	0.521	0.308	7.7e-32
UNIPROTKB\|F1PYA2		435	OXA1L "Uncharacterized protein	0.628	0.629	0.288	2.6e-31

TAIR\|locus:2174068 OXA1 "homolog of yeast oxidase assembly 1 (OXA1)" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 216/427 (50%), Positives = 294/427 (68%)

Query:     1 MAYRRSLTTRATLIARAYNPSFNYIIYDHDHKQKSPDETLSRTNIHSFIQSRXXXXXXXX 60
             MA+R++L+ R+ L AR   P ++ I  + DH++ S  +  S+ + HSF+  R        
Sbjct:     1 MAFRQTLSIRSRLFARRNQPVYHIIPRESDHERDSFCQETSQRSYHSFLHQRSVNNSDFS 60

Query:    61 XXXXXXXFHGQRVSQFSLVPSVGSAFCRYMSTTVGEGADKIELISDVADVFTETTVQAIA 120
                     H        L P+ G AF RYMS+  G G++KI ++SD+A+V T++T+Q + 
Sbjct:    61 KVSGGS-LH------LPLAPTSGFAFYRYMSSAPGVGSEKIGVMSDIAEVITDSTLQDVP 113

Query:   121 NQXXXXXXXXX-XXXDSFLPVAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLIN 179
              Q             DSF P+AALQ  ID +H FTGF WWASI+V T+LIR++TVPLLI 
Sbjct:   114 AQAAAAVSEVTLAAADSFFPIAALQQCIDMVHTFTGFEWWASIVVATILIRSSTVPLLIK 173

Query:   180 QLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQNLFKEYGVHPLTPLKGLFIQ 239
             Q+K T+KL LMRPRLE I+++MQ+K MD + +A+GQK+M+NLFKEYGV P TP+KG+FIQ
Sbjct:   174 QMKDTTKLALMRPRLESIREEMQNKGMDSVTMAEGQKKMKNLFKEYGVTPFTPMKGMFIQ 233

Query:   240 GPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG 299
             GP+FI FFLAI NMAEKVPSF+ GGA WFTDL+TPDS YILP++TGL+FLITVECN QEG
Sbjct:   234 GPLFICFFLAIRNMAEKVPSFQTGGALWFTDLTTPDSLYILPVITGLTFLITVECNAQEG 293

Query:   300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKMLG 359
             +EGNP A T+K + R FA+L++P+TM+FP+AIFCYWITSN FSL+YGLV+K P VKKML 
Sbjct:   294 MEGNPMAGTVKTVCRVFALLTVPMTMSFPQAIFCYWITSNLFSLMYGLVIKRPQVKKMLR 353

Query:   360 VPEIPVVQQTTDPKPSFSLFSAIKQXXXXXXXXXXXXXXXXEQPKSTEQKISSSAV--LS 417
             +P++P        +PSF LFSA+K+                E P     ++SS+++  +S
Sbjct:   354 IPDLP--PPPPGQQPSFDLFSALKKMKAMTQDHTQNQI---EPPSPVNPRLSSTSLSPVS 408

Query:   418 QRIRSLE 424
             +R+++LE
Sbjct:   409 KRLKALE 415

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0006461 "protein complex assembly" evidence=IMP

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IGI

TAIR\|locus:2039134 OXA1L "AT2G46470" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

POMBASE\|SPBP4H10.03 oxa102 "mitochondrial inner membrane translocase Oxa102" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-071004-49 oxa1l "oxidase (cytochrome c) assembly 1-like" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0027615 CG6404 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EVY0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|J3KNA0 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q15070 OXA1L "Mitochondrial inner membrane protein OXA1L" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1916339 Oxa1l "oxidase assembly 1-like" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PYA2 OXA1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42191	OXA1_ARATH	No assigned EC number	0.5466	0.9724	0.9883	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_I000814	inner membrane protein (459 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		436
pfam02096		193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	4e-51
COG0706		314	COG0706, YidC, Preprotein translocase subunit YidC	1e-37
TIGR03592		181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	1e-36
PRK02944		255	PRK02944, PRK02944, OxaA-like protein precursor; V	3e-29
PRK01622		256	PRK01622, PRK01622, OxaA-like protein precursor; V	1e-25
PRK00145		223	PRK00145, PRK00145, putative inner membrane protei	8e-24
PRK01318		521	PRK01318, PRK01318, membrane protein insertase; Pr	4e-16
PRK00247		429	PRK00247, PRK00247, putative inner membrane protei	7e-11
PRK01315		329	PRK01315, PRK01315, putative inner membrane protei	7e-11
PRK01001		795	PRK01001, PRK01001, putative inner membrane protei	3e-07
PRK02201		357	PRK02201, PRK02201, putative inner membrane protei	3e-07
PRK02463		307	PRK02463, PRK02463, OxaA-like protein precursor; P	1e-06
PRK03449		304	PRK03449, PRK03449, putative inner membrane protei	1e-06
PRK02654		375	PRK02654, PRK02654, putative inner membrane protei	2e-04

>gnl\|CDD\|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein	Back alignment and domain information

 Score =  170 bits (433), Expect = 4e-51
 Identities = 68/197 (34%), Positives = 112/197 (56%), Gaps = 8/197 (4%)

Query: 157 NWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQK 216
           NW  +II+ T+L+R   +PL + Q KS +K+  ++P ++EI++  +D   DP  +   Q+
Sbjct: 2   NWGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKD---DPQKL---QQ 55

Query: 217 RMQNLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDS 276
            M  L+KE+GV+PL     + IQ P+FI+ + A+ NMAE + S +  G  W  DLS PD 
Sbjct: 56  EMMKLYKEHGVNPLAGCLPMLIQLPIFIALYRALRNMAE-LRSLETAGFLWIKDLSAPDP 114

Query: 277 -FYILPILTGLSFLITVECNMQEGLEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYW 335
            ++ILPIL GL+  +  + +  +       +  MK +     ++ +   + FP  +  YW
Sbjct: 115 PYFILPILAGLTMFLQQKLSPSQDPPDLQQSAQMKIMMYIMPLIFLFFFLNFPAGLVLYW 174

Query: 336 ITSNFFSLVYGLVLKVP 352
           I SN FSLV  L+++ P
Sbjct: 175 IVSNLFSLVQQLIIRKP 191

Length = 193

>gnl\|CDD\|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated	Back alignment and domain information

>gnl\|CDD\|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated	Back alignment and domain information

>gnl\|CDD\|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>gnl\|CDD\|234942 PRK01318, PRK01318, membrane protein insertase; Provisional	Back alignment and domain information

>gnl\|CDD\|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated	Back alignment and domain information

>gnl\|CDD\|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>gnl\|CDD\|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>gnl\|CDD\|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>gnl\|CDD\|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional	Back alignment and domain information

>gnl\|CDD\|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>gnl\|CDD\|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		436
PRK02944		255	OxaA-like protein precursor; Validated	100.0
PRK00145		223	putative inner membrane protein translocase compon	100.0
PRK01622		256	OxaA-like protein precursor; Validated	100.0
PRK01318		521	membrane protein insertase; Provisional	100.0
PRK02463		307	OxaA-like protein precursor; Provisional	100.0
TIGR03592		181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PF02096		198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
PRK01001		795	putative inner membrane protein translocase compon	100.0
COG0706		314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK02201		357	putative inner membrane protein translocase compon	100.0
KOG1239		372	consensus Inner membrane protein translocase invol	100.0
PRK01315		329	putative inner membrane protein translocase compon	100.0
PRK03449		304	putative inner membrane protein translocase compon	100.0
PRK00247		429	putative inner membrane protein translocase compon	100.0
PRK02654		375	putative inner membrane protein translocase compon	100.0
COG1422		201	Predicted membrane protein [Function unknown]	97.85
PF01956		168	DUF106: Integral membrane protein DUF106; InterPro	91.76

>PRK02944 OxaA-like protein precursor; Validated	Back alignment and domain information

Probab=100.00  E-value=2.8e-52  Score=407.48  Aligned_cols=209  Identities=31%  Similarity=0.553  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 013775          140 VAALQHFIDAMHNFTGFNWWASIIVTTLLIRTATVPLLINQLKSTSKLTLMRPRLEEIKQDMQDKAMDPMAVADGQKRMQ  219 (436)
Q Consensus       140 v~~lq~lLe~iH~~tGLpW~~aIil~Ti~vRl~llPL~i~q~r~~aKm~~l~Pel~~i~~k~~~~~~D~~~~~~~q~em~  219 (436)
                      +.++.++|+++|.++|.|||++|+++|+++|++++|++++|+++++||+++|||+++||+||++  +|++++++.++|++
T Consensus        41 ~~p~~~~l~~i~~~~g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~--~~~~~~~k~~~e~~  118 (255)
T PRK02944         41 VYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSS--KDQATQQKLQQEMM  118 (255)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence            5688999999999999999999999999999999999999999999999999999999999985  37777788899999


Q ss_pred             HHHHHhCCCCccchhhhhhhhHHHHHHHHHHhhhhccCCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHHhhccC
Q 013775          220 NLFKEYGVHPLTPLKGLFIQGPVFISFFLAISNMAEKVPSFKNGGAFWFTDLSTPDSFYILPILTGLSFLITVECNMQEG  299 (436)
Q Consensus       220 ~LyKk~gvnP~~~~l~~LiQiPIfi~lf~aIr~ma~~vpsl~~~G~lWf~DLt~pDp~~ILPil~~l~~l~~~el~~~~~  299 (436)
                      +|||||||||+++|+|+|+|+|||+++|.+||++.+    +.++||+|| ||+.+|||++||++++++++++.+++....
T Consensus       119 ~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~----l~~~~flW~-dLs~~Dp~~iLPil~~~~~~~~~~~~~~~~  193 (255)
T PRK02944        119 QLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE----ISKHSFLWF-DLGQADPYYILPIVAGITTFIQQKLMMAGT  193 (255)
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH----HhhcCCCcc-ccCcchHHHHHHHHHHHHHHHHHHhcccCC
Confidence            999999999999999999999999999999998865    778999999 999999999999999999999988765321


Q ss_pred             CCCChhHHHHHHHHHHhHHHHHhHhcchhhHHHHHHHHhHHHHHHHHHHhcchhHHhhh
Q 013775          300 LEGNPAAVTMKNISRGFAVLSIPLTMTFPKAIFCYWITSNFFSLVYGLVLKVPGVKKML  358 (436)
Q Consensus       300 ~~~~p~~~~mk~~~rvm~v~~vp~~~~~PagL~lYWitSnlfsl~Q~~lLr~p~vRk~l  358 (436)
                      ..   .+..|+.+++++|+++++++.++|+|+.+||++||+|+++|++++++|.||+-.
T Consensus       194 ~~---~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~~~~i~Q~~~l~~~~~~~~~  249 (255)
T PRK02944        194 AG---QNPQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASK  249 (255)
T ss_pred             CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchhh
Confidence            11   234577788999999999999999999999999999999999999999999744

>PRK00145 putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>PRK01622 OxaA-like protein precursor; Validated	Back alignment and domain information

>PRK01318 membrane protein insertase; Provisional	Back alignment and domain information

>PRK02463 OxaA-like protein precursor; Provisional	Back alignment and domain information

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain	Back alignment and domain information

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes	Back alignment and domain information

>PRK01001 putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK02201 putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK01315 putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>PRK03449 putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>PRK00247 putative inner membrane protein translocase component YidC; Validated	Back alignment and domain information

>PRK02654 putative inner membrane protein translocase component YidC; Provisional	Back alignment and domain information

>COG1422 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		436
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 49/366 (13%), Positives = 92/366 (25%), Gaps = 134/366 (36%)

Query: 30  DHKQKSPDETLS-RTNIHSFIQSRSFGNSLNNSYGLGNFFHGQRVSQFSLV------PSV 82
           DH         S +  +   ++S+ + N L                   LV         
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCL-------------------LVLLNVQNAKA 258

Query: 83  GSAF---CRYMSTT--------VGEGADKIELISDVADVFTE------------TTVQAI 119
            +AF   C+ + TT        +         +   +   T                Q +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 120 ANQAPAVNEVAIA--AA---------DSFLPV------AALQHFIDAM---------HNF 153
             +    N   ++  A          D++  V        ++  ++ +            
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 154 TGFN-------------WWASI------IVTTLLIRTATVPLLINQLKSTSKLTLMRPRL 194
           + F              W+  I      +V  L   +     L+ +    S +++    L
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-----LVEKQPKESTISIPSIYL 433

Query: 195 EEIKQDMQDKAMDPMAVADGQKRM---QNLFKEYGVHPLTPLK--GLFIQGPVFISFFLA 249
           E   +   + A+         + +    N+ K +    L P      F      I   L 
Sbjct: 434 ELKVKLENEYAL--------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHLK 482

Query: 250 ISNMAEKVPSFKNGGAFWFTDL------------STPDSFYILPILTGLSF---LITVEC 294
                E++  F+      F D             +   S  IL  L  L F    I    
Sbjct: 483 NIEHPERMTLFRM----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 295 NMQEGL 300
              E L
Sbjct: 539 PKYERL 544

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00