Citrus Sinensis ID: 013780

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
Protein Sequence
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQTD
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccccccccHHHHHHccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHcccEEEEEccccHHHHHccccccEEcccccccccccccccccccccHHHHHHHccccccccccccccccEEEEEccccccccccHHHHccHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEEccHHHHHHHHHcccccccccccccccEEccccccHHHHHHHHHHcccccEEEccccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccccccccccccccccHHHHHHHHHHHcccccEEEEcccccEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccEEEEEHHHHHHHHHHcccccEEEEEEEEEccccccccccccccHHHHHHHccccccccccccccccEEEEEEccccccccccEEEEcHHHHHHHHHcccccHHccccccEEEEEcHHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHccccEcccccHHHHHHHccccccHccHHHHHHHHcccccccHHHHHHHHHHccccEEEEEcccccccccEEEEcccccccccccccccEccccEEEEEcccccccccccccEEEEEEcccHcccccccHHHHHHHHHccccccccEEEEEEcccc
Coil and Loop (DISEMBL)
meksgygrdgiyrslrpplvlpsdpsfsmvhflfrnsasyssklalidadsdeslsfsQFKSIVIKVSHsfrhlgitkkdvvlifapnsihfpiCFLGVIAIGAiastanpvyTVSELskqvkdsnpklvitvpelwdkvkdlnlpavllgskdkvsssglisrsskivSFHDLIelsgsvtdipdvsvkqTDAAALLYssgttgvskGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDqlqkgncvvsmGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLvrkfdisslklvgsgaaplgkELMEDcqknipgatifqvgygmtetcapislenplvgvrrsgsagtLVAGVEAQIVsvdtlkplppnqlgeiwvrgpnvtpgiVYINFFVFTLFLWgcehtdsfirgkdqqtd
Flexible Loop (DISEMBL)
meksgygrdgiyrslrpplvlpSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSElskqvkdsnpkLVITVPELWDKVKDLNLPAVllgskdkvsssglisrsskIVSFHDLIELSgsvtdipdvSVKQTDAAALLYSsgttgvskGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDsfirgkdqqtd
Low Complexity Region (SEG)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDkvsssglisrsskivsFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQTD
Disordered region (IsUnstruct)
***********Y******LVLP*DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSK*******LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFI********
Disordered Region (DISOPRED)
******G**GIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKD****
Disordered Region (DISEMBL)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSK**********RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQTD
Disordered Region (DISPRO)
*****YGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQ**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	436	2.2.26 [Sep-21-2011]
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	no	0.928	0.744	0.639	1e-152
Q0DV32	552	4-coumarate--CoA ligase-l	yes	no	0.938	0.740	0.477	1e-100
P41636	537	4-coumarate--CoA ligase O	N/A	no	0.873	0.709	0.359	1e-63
P31685	545	4-coumarate--CoA ligase 2	N/A	no	0.871	0.697	0.375	3e-63
P31684	545	4-coumarate--CoA ligase 1	N/A	no	0.871	0.697	0.375	6e-63
Q84P21	546	4-coumarate--CoA ligase-l	no	no	0.892	0.712	0.358	7e-63
Q42524	561	4-coumarate--CoA ligase 1	no	no	0.905	0.704	0.368	1e-62
P31687	562	4-coumarate--CoA ligase 2	no	no	0.832	0.645	0.398	1e-62
Q84P26	550	4-coumarate--CoA ligase-l	no	no	0.887	0.703	0.364	1e-62
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.871	0.694	0.371	1e-62

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  536 bits (1382), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 262/410 (63%), Positives = 326/410 (79%), Gaps = 5/410 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+D+ +SL+FSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD V        +SKI+SF +++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPP--GSNSKILSFDNVMELSEP 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + Q GYGMTETC  +S+E+P +G
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ-GYGMTETCGIVSVEDPRLG 357

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            R SGSAG L  GVEAQIVSV+T K  PPNQ GEIWVRGPN+  G  Y+N
Sbjct: 358 KRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKG--YLN 405

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/417 (47%), Positives = 269/417 (64%), Gaps = 8/417 (1%)

Query: 4   SGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNS-ASYSSKLALIDADSDESLSFSQFKS 62
           +GYG DG+YRSLRPP  + SDP  S+   L R + A  S+      A    +L+F++ +S
Sbjct: 9   AGYGADGVYRSLRPPAPVASDPGLSLTDLLLRRADACPSAVALADAAAGGRALTFAELRS 68

Query: 63  IVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
            V+  + +     G+   D VL+ APN + +P+CF  V A+GA+ +T NP YT  E++KQ
Sbjct: 69  AVLSTAVALSSRAGVRPGDAVLLLAPNCVLYPVCFFAVTALGAVGTTVNPDYTPREIAKQ 128

Query: 122 VKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181
           V D+  KLVIT+  L  K+  L LP +LL      +++ L   ++  V+ +  +      
Sbjct: 129 VSDARAKLVITISALVPKIAGLRLPVILLDDDANAAAASLPPDAT--VTLYTNLVAGVKE 186

Query: 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV 241
            D     +KQ+D AALLYSSGTTG SKGVILTH+NFIAA+ M+++ Q+   E  +V LC 
Sbjct: 187 ADYRRPPIKQSDTAALLYSSGTTGDSKGVILTHRNFIAAARMVTSDQDERREGPNVFLCF 246

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LPMFH+FGLSVI Y QL +GN +++M +FDI   + A++++RVT  + VPP+I+ALAK+ 
Sbjct: 247 LPMFHIFGLSVITYAQLHRGNAIIAMSRFDINSLMEAVQRHRVTHLFCVPPVIIALAKHG 306

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG- 360
              K+D+SSLK +GSGAAPLGK++ME   K  P + I Q GYGMTETC  ISLE P  G 
Sbjct: 307 KAGKYDLSSLKFIGSGAAPLGKDVMEVVAKKFPDSEIVQ-GYGMTETCGIISLEYPEKGQ 365

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLF 417
            R  GS GTLV+GVEA+IV + TLK LPPNQ+GEI VRGPNV  G  Y N    T F
Sbjct: 366 AREFGSTGTLVSGVEAKIVDIKTLKHLPPNQVGEICVRGPNVMQG--YFNNVQATEF 420

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P41636|4CL_PINTA 4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 229/414 (55%), Gaps = 33/414 (7%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           + +YRS  P + + SD    +  + F   A ++ +  LID  +D +  FS+ + I  KV+
Sbjct: 9   EHLYRSKLPDIEI-SD-HLPLHSYCFERVAEFADRPCLIDGATDRTYCFSEVELISRKVA 66

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LG+ +  VV++  PN I F   F+G    GAI +TANP Y   E++KQ K +  +
Sbjct: 67  AGLAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIVTTANPFYKPGEIAKQAKAAGAR 126

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           +++T+    +K+ DL    VL+ + D     G           H  +      T  P V 
Sbjct: 127 IIVTLAAYVEKLADLQSHDVLVITIDDAPKEG---------CQHISVLTEADETQCPAVK 177

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCV 241
           +   D  AL YSSGTTG+ KGV+LTHK  ++     S  Q++ GE        D V+LCV
Sbjct: 178 IHPDDVVALPYSSGTTGLPKGVMLTHKGLVS-----SVAQQVDGENPNLYFHSDDVILCV 232

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LP+FH++ L+ +L   L+ G   + M KF++   L  I+KY+VTV  +VPPI+L + K+ 
Sbjct: 233 LPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIVPPIVLDITKSP 292

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISL-----EN 356
           +V ++D+SS++++ SGAAPLGKEL +  ++  P A IF  GYGMTE    +++     +N
Sbjct: 293 IVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKA-IFGQGYGMTEAGPVLAMNLAFAKN 351

Query: 357 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           P     +SGS GT+V   + +I+  +T + LP NQ GEI +RGP +  G  YIN
Sbjct: 352 PF--PVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKG--YIN 401

Pinus taeda (taxid: 3352)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31685|4CL2_SOLTU 4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1

 Score =  243 bits (619), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/415 (37%), Positives = 232/415 (55%), Gaps = 35/415 (8%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           D I+RS  P + +P      +  + F N + ++S+  LID  +D   ++++ +    KV+
Sbjct: 12  DLIFRSKLPDIYIPK--HLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVA 69

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LGI +KD ++I  PN   F   F+G   +GAI++ ANP++T +E+ KQ K S+ K
Sbjct: 70  VGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAK 129

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           +VIT      KVKD  +       ++ +    + S     V F +LI+      +IPDV 
Sbjct: 130 IVITQACFAGKVKDYAI-------ENDLKVICVDSAPEGCVHFSELIQ--SDEHEIPDVK 180

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCV 241
           ++  D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V++CV
Sbjct: 181 IQPDDVVALPYSSGTTGLPKGVMLTHKG-----LVTSVAQQVDGENANLYMHSDDVLMCV 235

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LP+FH++ L+ +L   L+ G  ++ M KFDI   L  I K++VT+   VPPI+LA+AK+ 
Sbjct: 236 LPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSP 295

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET------CAPISLE 355
           LV  +D+SS++ V SGAAPLGKEL +  +   P A + Q GYGMTE       C   + E
Sbjct: 296 LVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQ-GYGMTEAGPVLAMCLAFAKE 354

Query: 356 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
              +   +SG+ GT+V   E +IV  DT   LP NQ GEI +RG  +  G  Y+N
Sbjct: 355 PFDI---KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKG--YLN 404

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31684|4CL1_SOLTU 4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1

 Score =  241 bits (616), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 156/415 (37%), Positives = 232/415 (55%), Gaps = 35/415 (8%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           D I+RS  P + +P      +  + F N + ++S+  LID  +D   ++++ +    KV+
Sbjct: 12  DLIFRSKLPDIYIPK--HLPLHSYCFENLSEFNSRPCLIDGANDRIYTYAEVELTSRKVA 69

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LGI +KD ++I  PN   F   F+G   +GAI++ ANP++T +E+ KQ K S+ K
Sbjct: 70  VGLNKLGIQQKDTIMILLPNCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAK 129

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           +VIT      KVKD  +       ++ +    + S     V F +LI+      +IPDV 
Sbjct: 130 IVITQACFAGKVKDYAI-------ENDLKVICVDSVPEGCVHFSELIQ--SDEHEIPDVK 180

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCV 241
           ++  D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V++CV
Sbjct: 181 IQPDDVVALPYSSGTTGLPKGVMLTHKG-----LVTSVAQQVDGENANLYMHSDDVLMCV 235

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LP+FH++ L+ +L   L+ G  ++ M KFDI   L  I K++VT+   VPPI+LA+AK+ 
Sbjct: 236 LPLFHIYSLNSVLLCALRVGAAILIMQKFDIAQFLELIPKHKVTIGPFVPPIVLAIAKSP 295

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET------CAPISLE 355
           LV  +D+SS++ V SGAAPLGKEL +  +   P A + Q GYGMTE       C   + E
Sbjct: 296 LVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQ-GYGMTEAGPVLAMCLAFAKE 354

Query: 356 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
              +   +SG+ GT+V   E +IV  DT   LP NQ GEI +RG  +  G  Y+N
Sbjct: 355 PFDI---KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKG--YLN 404

Solanum tuberosum (taxid: 4113)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  241 bits (616), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 147/410 (35%), Positives = 235/410 (57%), Gaps = 21/410 (5%)

Query: 3   KSGY-GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
           +SG+   +  + S R P+ LP +PS  +  F+  +S ++  ++A IDA + ++L+F++  
Sbjct: 7   RSGFCNSNSTFYSKRTPIPLPPNPSLDVTTFI--SSQAHRGRIAFIDASTGQNLTFTELW 64

Query: 62  SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
             V  V+     +GI K  VVL+ +PNSI FP+  L V+++GAI +T NP+ T +E++KQ
Sbjct: 65  RAVESVADCLSEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEIAKQ 124

Query: 122 VKDSNPKLVITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179
           +KDSNP L  T  +L  K+      LP VL+  +++V S G + R        ++++   
Sbjct: 125 IKDSNPVLAFTTSQLLPKISAAAKKLPIVLM-DEERVDSVGDVRR------LVEMMKKEP 177

Query: 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD--HV 237
           S   + +  V Q D A LLYSSGTTG+SKGVI +H+N IA   M+       G  D    
Sbjct: 178 SGNRVKE-RVDQDDTATLLYSSGTTGMSKGVISSHRNLIA---MVQTIVNRFGSDDGEQR 233

Query: 238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL 297
            +C +PMFH++GL+      L  G+ ++ + KF++   + AI KY+ T   +VPPI++A+
Sbjct: 234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query: 298 --AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLE 355
               + +  K+D+SS+  V  G APL KE+ E   +  P   I Q GYG+TE+    +  
Sbjct: 294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQ-GYGLTESTGIGAST 352

Query: 356 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           + +   RR G+AG L A +E +IV   T + L P Q GE+W++GP++  G
Sbjct: 353 DTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKG 402

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q42524|4CL1_ARATH 4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1

 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 157/426 (36%), Positives = 241/426 (56%), Gaps = 31/426 (7%)

Query: 1   MEK--SGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFS 58
           MEK  +    D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S
Sbjct: 12  MEKQSNNNNSDVIFRSKLPDIYIPN--HLSLHDYIFQNISEFATKPCLINGPTGHVYTYS 69

Query: 59  QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 118
               I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E+
Sbjct: 70  DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 129

Query: 119 SKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 177
           +KQ K SN KL+IT     DK+K L N   V++   D   S   +      + F +L + 
Sbjct: 130 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNES---VPIPEGCLRFTELTQS 186

Query: 178 SGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--- 233
           +   +++ D V +   D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE   
Sbjct: 187 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPN 241

Query: 234 ----LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
                D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +
Sbjct: 242 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPM 301

Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
           VPPI+LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + Q GYGMTE  
Sbjct: 302 VPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ-GYGMTEAG 360

Query: 350 APISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 404
             +++     + P     +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +  
Sbjct: 361 PVLAMSLGFAKEPF--PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMK 418

Query: 405 GIVYIN 410
           G  Y+N
Sbjct: 419 G--YLN 422

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P31687|4CL2_SOYBN 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2

 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 156/391 (39%), Positives = 226/391 (57%), Gaps = 28/391 (7%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
           + F+N + ++ +  LI   + ++ +++    I  K++    +LGI K DVV+I   NS  
Sbjct: 45  YCFQNLSQFAHRPCLIVGPASKTFTYADTHLISSKIAAGLSNLGILKGDVVMILLQNSAD 104

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           F   FL +  IGA+A+TANP YT  E+ KQ   S  KL+IT     DK++  N     LG
Sbjct: 105 FVFSFLAISMIGAVATTANPFYTAPEIFKQFTVSKAKLIITQAMYVDKLR--NHDGAKLG 162

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
              KV +  +       + F  L E + S  D+P+V +   DA A+ +SSGTTG+ KGVI
Sbjct: 163 EDFKVVT--VDDPPENCLHFSVLSEANES--DVPEVEIHPDDAVAMPFSSGTTGLPKGVI 218

Query: 212 LTHKNFIAASLMISAHQELVGE-------LDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
           LTHK     SL  S  Q++ GE        + V+LCVLP+FH+F L+ +L   L+ G+ V
Sbjct: 219 LTHK-----SLTTSVAQQVDGENPNLYLTTEDVLLCVLPLFHIFSLNSVLLCALRAGSAV 273

Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
           + M KF+I   L  I+++RV+V  VVPP++LALAKN +V  FD+SS++LV SGAAPLGKE
Sbjct: 274 LLMQKFEIGTLLELIQRHRVSVAMVVPPLVLALAKNPMVADFDLSSIRLVLSGAAPLGKE 333

Query: 325 LMEDCQKNIPGATIFQVGYGMTETCAPISL-----ENPLVGVRRSGSAGTLVAGVEAQIV 379
           L E  +  +P A + Q GYGMTE    +S+     + P     +SGS GT+V   E ++V
Sbjct: 334 LEEALRNRMPQAVLGQ-GYGMTEAGPVLSMCLGFAKQPF--QTKSGSCGTVVRNAELKVV 390

Query: 380 SVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
             +T + L  NQ GEI +RG  +  G  Y+N
Sbjct: 391 DPETGRSLGYNQPGEICIRGQQIMKG--YLN 419

Glycine max (taxid: 3847)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q84P26|4CLL8_ARATH 4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2

 Score =  241 bits (614), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 146/401 (36%), Positives = 226/401 (56%), Gaps = 14/401 (3%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           +  + S R PL LPS  S  +  F+  +S +Y  K A IDA +D  +SFS     V +V+
Sbjct: 21  NSTFYSKRKPLALPSKESLDITTFI--SSQTYRGKTAFIDAATDHRISFSDLWMAVDRVA 78

Query: 69  HSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 127
               H +GI + DVVL+ +PN+I  PI  L V+++GA+ +TANP+ T SE+ +Q+ DSNP
Sbjct: 79  DCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNTASEILRQIADSNP 138

Query: 128 KLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIV-SFHDLIELSGSVTDIPD 186
           KL  T PEL  K+    +  VL    ++V  +  + R  K+V +  ++++   S   + +
Sbjct: 139 KLAFTTPELAPKIASSGISIVL----ERVEDTLRVPRGLKVVGNLTEMMKKEPSGQAVRN 194

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
             V + D A LLYSSGTTG SKGV  +H N IA      A  E   +     +C +P+FH
Sbjct: 195 -QVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVARYIA--EPFEQPQQTFICTVPLFH 251

Query: 247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL--AKNSLVR 304
            FGL   +   L  G  VV + +FD+   + A+EKYR T   +VPP+++ +    + +++
Sbjct: 252 TFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTMINKADQIMK 311

Query: 305 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRS 364
           K+D+S L+ V  G APL KE+ +   K  P   ++Q GY +TE+    +    +   RR 
Sbjct: 312 KYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQ-GYALTESNGAGASIESVEESRRY 370

Query: 365 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           G+ G L  GVEA+IV  +T + +  NQ GE+W++GP++  G
Sbjct: 371 GAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKG 411

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 154/415 (37%), Positives = 234/415 (56%), Gaps = 35/415 (8%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           D I+RS  P + +P      +  + F N + +SS+  LI+  +D+  ++++ +    KV+
Sbjct: 14  DLIFRSKLPDIYIPK--HLPLHSYCFENISEFSSRPCLINGANDQIYTYAEVELTCRKVA 71

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                LGI +KD ++I  PNS  F   F+G   +GAI++ ANP++T +E+ KQ K S+ K
Sbjct: 72  VGLNKLGIQQKDTIMILLPNSPEFVFAFMGASYLGAISTMANPLFTPAEVVKQAKASSAK 131

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS 188
           ++IT      KVKD         S++ V    + S     + F +L +      +IP+V 
Sbjct: 132 IIITQSCFVGKVKDY-------ASENDVKVICIDSAPEGCLHFSELTQ--SDEHEIPEVK 182

Query: 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCV 241
           ++  D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        + V++CV
Sbjct: 183 IQPDDVVALPYSSGTTGLPKGVMLTHKG-----LVTSVAQQVDGENANLYMHSEDVLMCV 237

Query: 242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
           LP+FH++ L+ IL   L+ G  ++ M KFDI   L  I+KY+V++   VPPI+LA+AK+ 
Sbjct: 238 LPLFHIYSLNSILLCGLRVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVLAIAKSP 297

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET------CAPISLE 355
           +V  +D+SS++ V SGAAPLGKEL +  +   P A + Q GYGMTE       C   + E
Sbjct: 298 IVDSYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQ-GYGMTEAGPVLAMCLAFAKE 356

Query: 356 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
              +   +SG+ GT+V   E +IV  DT   LP NQ GEI +RG  +  G  Y+N
Sbjct: 357 PFDI---KSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKG--YLN 406

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
255565415	542	AMP dependent CoA ligase, putative [Rici	0.924	0.743	0.709	1e-165
224127622	543	4-coumarate-coa ligase [Populus trichoca	0.926	0.744	0.682	1e-158
224077516	543	4-coumarate-coa ligase [Populus trichoca	0.926	0.744	0.678	1e-156
380042366	543	acyl-activating enzyme 3 [Cannabis sativ	0.922	0.740	0.660	1e-155
297809709	544	hypothetical protein ARALYDRAFT_490166 [	0.928	0.744	0.651	1e-153
225436506	544	PREDICTED: 4-coumarate--CoA ligase-like	0.928	0.744	0.641	1e-152
312281669	543	unnamed protein product [Thellungiella h	0.926	0.744	0.636	1e-150
15234634	544	4-coumarate--CoA ligase-like 7 [Arabidop	0.928	0.744	0.639	1e-150
147839714	663	hypothetical protein VITISV_031619 [Viti	0.974	0.641	0.617	1e-150
449459112	543	PREDICTED: 4-coumarate--CoA ligase-like	0.922	0.740	0.655	1e-149

>gi|255565415|ref|XP_002523698.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223537002|gb|EEF38638.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/410 (70%), Positives = 334/410 (81%), Gaps = 7/410 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ SMV FLFRN  SY  K ALIDAD  ++LSFSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPLLVLPKDPNLSMVSFLFRNCNSYPHKPALIDADLSKTLSFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KSIVIKVSH    LGI+K DVVLIFAPNS  FPICFL + +IGAIA+TANP+YT +E+SK
Sbjct: 61  KSIVIKVSHGLLKLGISKNDVVLIFAPNSYQFPICFLAITSIGAIATTANPLYTTTEISK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPKLVITVPELW+KVKD NLPAV LG+K+ +    LI  +S+I SF  L+EL GS
Sbjct: 121 QIKDSNPKLVITVPELWNKVKDFNLPAVFLGAKESL----LIEPNSRIKSFDHLVELGGS 176

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
            ++ P ++VKQTD A LLYSSGTTG+SKGVILTH NFIAAS MI+  QE+ GEL +V LC
Sbjct: 177 NSEFPTINVKQTDIATLLYSSGTTGISKGVILTHGNFIAASQMITMDQEIAGELHNVFLC 236

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ GN VVSMGKFD E+ L+A+EKYR+T  WVVPP+ILALAK 
Sbjct: 237 FLPMFHVFGLAVIAYSQLQTGNAVVSMGKFDFELVLKAVEKYRITHLWVVPPVILALAKQ 296

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
           SLV+K+D+SSL+ VGSGAAPL KELME+C K IP A I Q GYGMTET   +S+ENP +G
Sbjct: 297 SLVKKYDLSSLQHVGSGAAPLSKELMEECAKTIPHAAIAQ-GYGMTETTGIVSVENPRIG 355

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           VR SGSAGTL AG+EAQI+SVDTLKPLPPNQLGEIWVRGPN+  G  Y N
Sbjct: 356 VRHSGSAGTLAAGIEAQIISVDTLKPLPPNQLGEIWVRGPNMMRG--YFN 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127622|ref|XP_002329323.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224127626|ref|XP_002329324.1| acyl:coa ligase [Populus trichocarpa] gi|222870777|gb|EEF07908.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222870778|gb|EEF07909.1| acyl:coa ligase [Populus trichocarpa]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/410 (68%), Positives = 327/410 (79%), Gaps = 6/410 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP D + S+V FLFRNS SY  K ALIDAD   +LSFS+ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPRDSNLSLVSFLFRNSNSYPHKPALIDADLSITLSFSEL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KSIVIK +H   +LGI+K DV+LIFAPNS  FP CFL + +IGA+A+TANP+YT SELSK
Sbjct: 61  KSIVIKFAHGLLNLGISKNDVILIFAPNSYQFPTCFLAITSIGAVATTANPLYTTSELSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPKLVITVPELWDKVK  NLPAV LG K+    S  +   S+I SFH L+EL GS
Sbjct: 121 QIKDSNPKLVITVPELWDKVKGFNLPAVFLGPKE---VSLPLESGSRIRSFHSLVELGGS 177

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
            ++ P   VKQ+D A LLYSSGTTGVSKGVILTH NFIAASLM+S  Q + GE+ +V LC
Sbjct: 178 NSEFPVSDVKQSDIATLLYSSGTTGVSKGVILTHGNFIAASLMVSMDQVMAGEIHNVFLC 237

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ GN VVSMGKF+ EM LR IEKYRVT  WVVPP+ILAL+K 
Sbjct: 238 FLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLRTIEKYRVTHMWVVPPVILALSKQ 297

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
           +LV+K+D+SSL+ +GSGAAPLGK+LM++C KN+P  TI Q G+GMTETC  +SLE+P +G
Sbjct: 298 NLVKKYDLSSLRNIGSGAAPLGKDLMKECAKNLPDTTIIQ-GFGMTETCGIVSLEDPRIG 356

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           VR SGSAG L AG+EAQI+SV+T KPLPPNQLGEIWVRGPN+  G  Y N
Sbjct: 357 VRHSGSAGILNAGIEAQIISVETAKPLPPNQLGEIWVRGPNMMRG--YFN 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077516|ref|XP_002305282.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222848246|gb|EEE85793.1| 4-coumarate-coa ligase [Populus trichocarpa]

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 278/410 (67%), Positives = 325/410 (79%), Gaps = 6/410 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS SY  K ALIDAD   +LSFS+ 
Sbjct: 1   MEKSGYGRDGIYRSLRPKLVLPKDPNLSLVSFLFRNSNSYPHKPALIDADLSITLSFSEL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KSIVIKV+H   +LGI+K DVVLIFAPNS  FPICFL + + GAIA+TANP+YT SELSK
Sbjct: 61  KSIVIKVAHGLLNLGISKNDVVLIFAPNSYQFPICFLAITSTGAIATTANPLYTTSELSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPKL+ITVPELWDKVK  NLPAV LG K +VS    +   S+I SF  L+ L GS
Sbjct: 121 QIKDSNPKLIITVPELWDKVKGFNLPAVFLGPK-RVSLP--LESGSRITSFDSLVGLGGS 177

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
            +  P  +VKQ+D + LLYSSGTTGVSKGVILTH NFIAASLM++  Q + GE+  V LC
Sbjct: 178 NSQFPSSNVKQSDISTLLYSSGTTGVSKGVILTHGNFIAASLMVTMDQAMAGEMHDVFLC 237

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ GN VVSMGKF+ EM L+ IEK+RVT  WVVPP++LALAK 
Sbjct: 238 FLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLKTIEKHRVTDMWVVPPVVLALAKQ 297

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
            +V+K+DISSL+ +GSGAAPLGK+LM++C KN+P   I Q GYGMTETC  +S+E+  +G
Sbjct: 298 DMVKKYDISSLRNIGSGAAPLGKDLMKECAKNLPDTIISQ-GYGMTETCGIVSVEDSRLG 356

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           VR SGSAG L AG+EAQIVSV+TLKPLPPNQLGEIWVRGPN+  G  Y N
Sbjct: 357 VRHSGSAGILAAGIEAQIVSVETLKPLPPNQLGEIWVRGPNMMRG--YFN 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042366|gb|AFD33347.1| acyl-activating enzyme 3 [Cannabis sativa]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/412 (66%), Positives = 337/412 (81%), Gaps = 10/412 (2%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRPPL LP++ + SMV FLFRNS+SY  K ALID+++++ LSFS F
Sbjct: 1   MEKSGYGRDGIYRSLRPPLHLPNNNNLSMVSFLFRNSSSYPQKPALIDSETNQILSFSHF 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS VIKVSH F +LGI K DVVLI+APNSIHFP+CFLG+IA GAIA+T+NP+YTVSELSK
Sbjct: 61  KSTVIKVSHGFLNLGIKKNDVVLIYAPNSIHFPVCFLGIIASGAIATTSNPLYTVSELSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           QVKDSNPKL+ITVP+L +KVK  NLP +L+G   +  SS     S K+++F+DL+ L GS
Sbjct: 121 QVKDSNPKLIITVPQLLEKVKGFNLPTILIGPDSEQESS-----SDKVMTFNDLVNLGGS 175

Query: 181 V-TDIPDV-SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
             ++ P V   KQ+D AALLYSSGTTG+SKGV+LTHKNFIA+SLM++  Q+LVGE+D+V 
Sbjct: 176 SGSEFPIVDDFKQSDTAALLYSSGTTGMSKGVVLTHKNFIASSLMVTMEQDLVGEMDNVF 235

Query: 239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
           LC LPMFHVFGL++I Y QLQ+GN V+SM +FD+E  L+ +EKY+VT  WVVPP+ILAL+
Sbjct: 236 LCFLPMFHVFGLAIITYAQLQRGNTVISMARFDLEKMLKDVEKYKVTHLWVVPPVILALS 295

Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPL 358
           KNS+V+KF++SS+K +GSGAAPLGK+LME+C K +P   + Q GYGMTETC  +S+E+  
Sbjct: 296 KNSMVKKFNLSSIKYIGSGAAPLGKDLMEECSKVVPYGIVAQ-GYGMTETCGIVSMEDIR 354

Query: 359 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            G R SGSAG L +GVEAQIVSVDTLKPLPPNQLGEIWV+GPN+  G  Y N
Sbjct: 355 GGKRNSGSAGMLASGVEAQIVSVDTLKPLPPNQLGEIWVKGPNMMQG--YFN 404

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809709|ref|XP_002872738.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata] gi|297318575|gb|EFH48997.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 267/410 (65%), Positives = 327/410 (79%), Gaps = 5/410 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+DS +SLSFSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDSGDSLSFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F+ LG+ K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFQRLGVRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  NLP VLLGSKD V        +SKI+SF+D++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFNLPVVLLGSKDSVQIPP--GSNSKILSFNDVMELSEP 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+D P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSDYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN +VSM KF++E+ L+ IEKYRVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLTVITYSQLQRGNALVSMAKFELELVLKNIEKYRVTHLWVVPPVFLALSKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + Q GYGMTETC  +S+E+P +G
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ-GYGMTETCGIVSVEDPRLG 357

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            R SGSAG L  GVEAQIVSV+T    PPNQ GEIWVRGPN+  G  Y+N
Sbjct: 358 KRNSGSAGMLAPGVEAQIVSVETGNSQPPNQQGEIWVRGPNMMKG--YLN 405

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436506|ref|XP_002276353.1| PREDICTED: 4-coumarate--CoA ligase-like 7 [Vitis vinifera]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 263/410 (64%), Positives = 328/410 (80%), Gaps = 5/410 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSL PPLVLP DP+ S+V FLFR ++SY  + ALI+A S E+++F+QF
Sbjct: 1   MEKSGYGRDGIYRSLSPPLVLPKDPNLSLVSFLFRKASSYPRRPALIEAHSGETVNFAQF 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS+VIKVSH    LG+ K DVVLIFAPNSI +P+CF GVIAIGAIA+TANP+YTV+E+ K
Sbjct: 61  KSMVIKVSHGLTRLGLKKNDVVLIFAPNSIQYPLCFFGVIAIGAIATTANPLYTVAEIQK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           QVKDSN KLVIT+P+LW+KVK LNLPAV+L S D  +S   I    KI  F DL++++G 
Sbjct: 121 QVKDSNAKLVITIPQLWEKVKALNLPAVILDSAD--TSKDTIQSPLKITYFSDLVKMAGE 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+  P VS+ Q D AALLYSSGTTG SKGVILTH NF+AA+LM++  +EL+GE+ +V LC
Sbjct: 179 VSHFPKVSITQGDTAALLYSSGTTGASKGVILTHGNFVAAALMVTMDEELMGEMHNVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+V++  QLQ G  +VSM KFD+++AL++IEKYRVT  W+VPP++LAL K 
Sbjct: 239 FLPMFHVFGLAVVMCAQLQMGYTIVSMPKFDLDVALKSIEKYRVTHMWLVPPVMLALVKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
             + ++DISSLK +GSGAAPLGKELME+C K++P   + Q GYGMTETC  +S E P +G
Sbjct: 299 GKLDRYDISSLKHIGSGAAPLGKELMEECAKSLPHVAVGQ-GYGMTETCGIVSKEIPKIG 357

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           ++ +GS G LV+GVEAQI+SVDTLKPLPPNQLGEIWVRGPN+  G  Y N
Sbjct: 358 IQHTGSTGPLVSGVEAQIISVDTLKPLPPNQLGEIWVRGPNMMKG--YFN 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281669|dbj|BAJ33700.1| unnamed protein product [Thellungiella halophila]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/410 (63%), Positives = 327/410 (79%), Gaps = 6/410 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRN++SY SK AL+D+DS ++LSFSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNTSSYPSKPALVDSDSGDTLSFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F  LGI + DVVLIFAPNS  FP+CFL V AIG + +TANP+YT SE+SK
Sbjct: 61  KSAVSRLAHGFLRLGIRQNDVVLIFAPNSYQFPLCFLAVSAIGGVFTTANPLYTTSEISK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGS + V   G    +SKI+SF++++ELS  
Sbjct: 121 QIKDSNPKIIISVEQLFDKIKGFDLPIVLLGSGESVQVPG---SNSKILSFNNVMELSEP 177

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+D+P V +KQ+D AALLYSSGTTG+SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 178 VSDLPTVQIKQSDTAALLYSSGTTGISKGVELTHGNFIAASLMVTMDQDLMGEYHAVFLC 237

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN V+SM KF++E  L+ IEKYRVT  WVVPP+ LAL+K 
Sbjct: 238 FLPMFHVFGLTVITYSQLQRGNAVISMAKFELETLLKNIEKYRVTQLWVVPPVFLALSKQ 297

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
           S+V+K+D+SSLK +GSGAAPLGK+LME+C +NI    + Q GYGMTETC  +S+E+P +G
Sbjct: 298 SIVKKYDLSSLKYIGSGAAPLGKDLMEECGRNISNVVLMQ-GYGMTETCGIVSVEDPRLG 356

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            R SGSAG L  GVEAQIVSV++ K  PPNQLGEIWVRGPN+  G  Y+N
Sbjct: 357 KRNSGSAGMLAPGVEAQIVSVESGKSQPPNQLGEIWVRGPNMMKG--YLN 404

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234634|ref|NP_192425.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] gi|75311763|sp|Q9M0X9.1|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like protein [Arabidopsis thaliana] gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|29893227|gb|AAP03022.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332657086|gb|AEE82486.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/410 (63%), Positives = 326/410 (79%), Gaps = 5/410 (1%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+D+ +SL+FSQ 
Sbjct: 1   MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct: 61  KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD V        +SKI+SF +++ELS  
Sbjct: 121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPP--GSNSKILSFDNVMELSEP 178

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct: 179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct: 239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
           S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + Q GYGMTETC  +S+E+P +G
Sbjct: 299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ-GYGMTETCGIVSVEDPRLG 357

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            R SGSAG L  GVEAQIVSV+T K  PPNQ GEIWVRGPN+  G  Y+N
Sbjct: 358 KRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKG--YLN 405

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839714|emb|CAN70560.1| hypothetical protein VITISV_031619 [Vitis vinifera]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/429 (61%), Positives = 328/429 (76%), Gaps = 4/429 (0%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGIYRSL PPLVLP DP+ S+V FLFR ++SY  + ALI+A S E+++F QF
Sbjct: 84  MEKSGYGRDGIYRSLSPPLVLPKDPNLSLVSFLFRKASSYPRRPALIEAHSGETVNFXQF 143

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           KS+VIKVSH    LG+ K DVVLIFAPNSI +P+CF GVIAIGAIA+TANP+YTV+E  K
Sbjct: 144 KSMVIKVSHGLTRLGLKKNDVVLIFAPNSIQYPLCFFGVIAIGAIATTANPLYTVAEXQK 203

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
           QVKDSNPKLVIT+P+LW+KVK LNLPAV+L S D  +S   I    KI  F DL++++G 
Sbjct: 204 QVKDSNPKLVITIPQLWEKVKALNLPAVILDSAD--TSKDTIQSPLKITYFSDLVKMAGE 261

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
           V+  P  S+ Q D AALLYSSGTTG SKGVILTH NF+AA+LM++  +EL+GE+ +V LC
Sbjct: 262 VSHFPKASITQGDTAALLYSSGTTGASKGVILTHGNFVAAALMVTMDEELMGEMHNVFLC 321

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            LPMFHVFGL+V++  QLQ G  +VSM KFD+++AL++IEKYRVT  W+VPP++LAL K 
Sbjct: 322 FLPMFHVFGLAVVMCAQLQMGYTIVSMPKFDLDVALKSIEKYRVTHMWLVPPVMLALVKQ 381

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
             +  +DISSLK +GSGAAPLGKELME+C K++P   + Q GYGMTETC  +S E P +G
Sbjct: 382 GKLDXYDISSLKHIGSGAAPLGKELMEECXKSLPHVAVGQ-GYGMTETCGIVSKEIPKIG 440

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV-YINFFVFTLFLW 419
           ++ +G  G L +GVEAQI+SVDTLKPLPPNQLGEIWVRGPN+    V   N    TL   
Sbjct: 441 IQHTGXTGPLXSGVEAQIISVDTLKPLPPNQLGEIWVRGPNMMKDAVEKQNGSQLTLCRM 500

Query: 420 GCEHTDSFI 428
            C+    FI
Sbjct: 501 QCKRYKDFI 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459112|ref|XP_004147290.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus] gi|449528351|ref|XP_004171168.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/412 (65%), Positives = 325/412 (78%), Gaps = 10/412 (2%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           MEKSGYGRDGI+RSLRPPLV P DP+ SM+ FLFRN  SY ++LA++DA+S  S+S+SQ 
Sbjct: 1   MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNLLSYPNRLAIVDAESSNSVSYSQL 60

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
           K++ I+VS+    LGI K DVVLIFAPNS+ F ICF+GVIAIGAI +T NPVYTVSEL+K
Sbjct: 61  KALAIRVSNGLIQLGIEKNDVVLIFAPNSVQFTICFIGVIAIGAIVTTCNPVYTVSELTK 120

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG- 179
           QV+D+ PKLVI+V ELWDKVK+LN+P VLL   D+   S +   S KI+ F+DL+ ++G 
Sbjct: 121 QVRDAKPKLVISVAELWDKVKNLNIPTVLL---DQQIPSAI--HSPKILCFNDLVNMAGD 175

Query: 180 -SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
            S ++ P V VKQ+D AALLYSSGTTG SKGVILTH NFIA+SLMI+  Q   GE   V 
Sbjct: 176 KSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHGNFIASSLMITMDQTFNGEEHGVF 235

Query: 239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
           L  LPMFHVFGL+ I Y QLQKGN VVSM KF++E AL A+EKY+VT  WVVPP++LALA
Sbjct: 236 LNFLPMFHVFGLACITYAQLQKGNTVVSMPKFNLEKALWAVEKYKVTDLWVVPPVVLALA 295

Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPL 358
           K SLV+K+++SS+K VGSGAAPLG+ELME+C  NIP A + Q GYGMTETC  ++LENP 
Sbjct: 296 KQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQ-GYGMTETCGVVALENPA 354

Query: 359 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           VG R SGSAGTL +GVEA+IVSVDTLKPLPPNQ GEI VRGPN+  G  Y N
Sbjct: 355 VGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMMLG--YFN 404

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.928	0.744	0.626	1.2e-134
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.922	0.716	0.362	5e-60
TAIR|locus:2176662	550	4CL8 [Arabidopsis thaliana (ta	0.880	0.698	0.366	4.5e-59
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.894	0.701	0.360	5.7e-59
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.901	0.695	0.370	1.9e-58
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.892	0.712	0.348	5.1e-58
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.869	0.675	0.370	5.1e-58
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.896	0.710	0.357	5.9e-57
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.894	0.689	0.349	1.4e-55
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.883	0.685	0.352	1.8e-55

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
 Identities = 257/410 (62%), Positives = 319/410 (77%)

Query:     1 MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
             MEKSGYGRDGIYRSLRP LVLP DP+ S+V FLFRNS+SY SKLA+ D+D+ +SL+FSQ 
Sbjct:     1 MEKSGYGRDGIYRSLRPTLVLPKDPNTSLVSFLFRNSSSYPSKLAIADSDTGDSLTFSQL 60

Query:    61 KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
             KS V +++H F  LGI K DVVLIFAPNS  FP+CFL V AIG + +TANP+YTV+E+SK
Sbjct:    61 KSAVARLAHGFHRLGIRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTVNEVSK 120

Query:   121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGS 180
             Q+KDSNPK++I+V +L+DK+K  +LP VLLGSKD                F +++ELS  
Sbjct:   121 QIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILS--FDNVMELSEP 178

Query:   181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240
             V++ P V +KQ+D AALLYSSGTTG SKGV LTH NFIAASLM++  Q+L+GE   V LC
Sbjct:   179 VSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGVFLC 238

Query:   241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
              LPMFHVFGL+VI Y QLQ+GN +VSM +F++E+ L+ IEK+RVT  WVVPP+ LAL+K 
Sbjct:   239 FLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLALSKQ 298

Query:   301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
             S+V+KFD+SSLK +GSGAAPLGK+LME+C +NIP   + Q GYGMTETC  +S+E+P +G
Sbjct:   299 SIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQ-GYGMTETCGIVSVEDPRLG 357

Query:   361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
              R SGSAG L  GVEAQIVSV+T K  PPNQ GEIWVRGPN+  G  Y+N
Sbjct:   358 KRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKG--YLN 405

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 152/419 (36%), Positives = 232/419 (55%)

Query:     1 MEKSGYGR--DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFS 58
             MEK       D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S
Sbjct:    12 MEKQSNNNNSDVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYS 69

Query:    59 QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 118
                 I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E+
Sbjct:    70 DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 129

Query:   119 SKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL 177
             +KQ K SN KL+IT     DK+K L N   V++   D                F +L + 
Sbjct:   130 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR---FTELTQS 186

Query:   178 SGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGEL 234
             +   +++ D V +   D  AL YSSGTTG+ KGV+LTHK  +   A  +   +  L    
Sbjct:   187 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS 246

Query:   235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
             D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +VPPI+
Sbjct:   247 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 306

Query:   295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISL 354
             LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + Q GYGMTE    +++
Sbjct:   307 LAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ-GYGMTEAGPVLAM 365

Query:   355 ENPLVGVR---RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
                        +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +  G  Y+N
Sbjct:   366 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG--YLN 422

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 146/398 (36%), Positives = 221/398 (55%)

Query:    12 YRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSF 71
             + S R PL LPS  S  +  F+  +S +Y  K A IDA +D  +SFS     V +V+   
Sbjct:    24 FYSKRKPLALPSKESLDITTFI--SSQTYRGKTAFIDAATDHRISFSDLWMAVDRVADCL 81

Query:    72 RH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
              H +GI + DVVL+ +PN+I  PI  L V+++GA+ +TANP+ T SE+ +Q+ DSNPKL 
Sbjct:    82 LHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNTASEILRQIADSNPKLA 141

Query:   131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
              T PEL  K+    +  VL   +D                  ++++   S   + +  V 
Sbjct:   142 FTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVGNLT---EMMKKEPSGQAVRN-QVH 197

Query:   191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
             + D A LLYSSGTTG SKGV  +H N IA      A  E   +     +C +P+FH FGL
Sbjct:   198 KDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVARYIA--EPFEQPQQTFICTVPLFHTFGL 255

Query:   251 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS--LVRKFDI 308
                +   L  G  VV + +FD+   + A+EKYR T   +VPP+++ +   +  +++K+D+
Sbjct:   256 LNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPPVLVTMINKADQIMKKYDV 315

Query:   309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC-APISLENPLVGVRRSGSA 367
             S L+ V  G APL KE+ +   K  P   ++Q GY +TE+  A  S+E+ +   RR G+ 
Sbjct:   316 SFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQ-GYALTESNGAGASIES-VEESRRYGAV 373

Query:   368 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
             G L  GVEA+IV  +T + +  NQ GE+W++GP++  G
Sbjct:   374 GLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKG 411

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 147/408 (36%), Positives = 226/408 (55%)

Query:     9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
             D I+RS  P + +P+     +  ++F N + +++K  LI+  + E  +++       K++
Sbjct:    20 DVIFRSRLPDIYIPNH--LPLHDYIFENISEFAAKPCLINGPTGEVYTYADVHVTSRKLA 77

Query:    69 HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                 +LG+ + DVV+I  PNS    + FL    IGAI ++ANP +T +E+SKQ K S  K
Sbjct:    78 AGLHNLGVKQHDVVMILLPNSPEVVLTFLAASFIGAITTSANPFFTPAEISKQAKASAAK 137

Query:   129 LVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTD-IPDV 187
             L++T     DK+K+L    VL+ + D                F +L +      D IP+ 
Sbjct:   138 LIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCLR------FSELTQSEEPRVDSIPE- 190

Query:   188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMF 245
              +   D  AL +SSGTTG+ KGV+LTHK  +   A  +   +  L    D V+LCVLPMF
Sbjct:   191 KISPEDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFNRDDVILCVLPMF 250

Query:   246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 305
             H++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  VVPPI+LA+AK+    K
Sbjct:   251 HIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETEK 310

Query:   306 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVR--- 362
             +D+SS+++V SGAAPLGKEL +      P A + Q GYGMTE    +++           
Sbjct:   311 YDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQ-GYGMTEAGPVLAMSLGFAKEPFPV 369

Query:   363 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
             +SG+ GT+V   E +I+  DT   LP N+ GEI +RG  +  G  Y+N
Sbjct:   370 KSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKG--YLN 415

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 152/410 (37%), Positives = 221/410 (53%)

Query:     3 KSGYGRD-GIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
             KSG+     I+ S R P+ LP +    +  F+   S  +  K   +DA +   LSF +  
Sbjct:    24 KSGFCESTSIFYSKREPMALPPNQFLDVTSFIA--SQPHRGKTVFVDAVTGRRLSFPELW 81

Query:    62 SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
               V +V+     LG+ K +VV+I +PNSI FPI  L V+++GAI +TANP+ T  E+SKQ
Sbjct:    82 LGVERVAGCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPINTSDEISKQ 141

Query:   122 VKDSNPKLVITVPELWDKV---KDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELS 178
             + DS P L  T  +L  K+    + NLP VL+                       +IE  
Sbjct:   142 IGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDYHVPSQSYGDRVKLVGR-LETMIETE 200

Query:   179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
              S + +    V Q D AALLYSSGTTG SKGV+L+H+N IA   ++ A++   G L+   
Sbjct:   201 PSESRVKQ-RVNQDDTAALLYSSGTTGTSKGVMLSHRNLIA---LVQAYRARFG-LEQRT 255

Query:   239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
             +C +PM H+FG        +  G  +V + KFD+   L A+E +R +   +VPPI++A+ 
Sbjct:   256 ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIVVAMV 315

Query:   299 K--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCA-PISLE 355
                N +  K+D+SSL  V +G APL +E+ E   +N P   I Q GYG+TE+ A   S+ 
Sbjct:   316 NGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQ-GYGLTESTAIAASMF 374

Query:   356 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
             N     +R G++G L   VE +IV  DT + L  NQ GE+W+R P V  G
Sbjct:   375 NK-EETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKG 423

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 143/410 (34%), Positives = 228/410 (55%)

Query:     3 KSGY-GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
             +SG+   +  + S R P+ LP +PS  +  F+  +S ++  ++A IDA + ++L+F++  
Sbjct:     7 RSGFCNSNSTFYSKRTPIPLPPNPSLDVTTFI--SSQAHRGRIAFIDASTGQNLTFTELW 64

Query:    62 SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
               V  V+     +GI K  VVL+ +PNSI FP+  L V+++GAI +T NP+ T +E++KQ
Sbjct:    65 RAVESVADCLSEIGIRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEIAKQ 124

Query:   122 VKDSNPKLVITVPELWDKVKDL--NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSG 179
             +KDSNP L  T  +L  K+      LP VL+  +                   ++++   
Sbjct:   125 IKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLV-------EMMKKEP 177

Query:   180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD--HV 237
             S   + +  V Q D A LLYSSGTTG+SKGVI +H+N IA   M+       G  D    
Sbjct:   178 SGNRVKE-RVDQDDTATLLYSSGTTGMSKGVISSHRNLIA---MVQTIVNRFGSDDGEQR 233

Query:   238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL 297
              +C +PMFH++GL+      L  G+ ++ + KF++   + AI KY+ T   +VPPI++A+
Sbjct:   234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query:   298 AKNS--LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLE 355
                +  +  K+D+SS+  V  G APL KE+ E   +  P   I Q GYG+TE+    +  
Sbjct:   294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQ-GYGLTESTGIGAST 352

Query:   356 NPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
             + +   RR G+AG L A +E +IV   T + L P Q GE+W++GP++  G
Sbjct:   353 DTVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKG 402

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 148/399 (37%), Positives = 225/399 (56%)

Query:    11 IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
             I+RS  P + +P+     +  + F   +S S K  LI   + +S ++ +   I  +V+  
Sbjct:    34 IFRSKLPDIDIPNH--LPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASG 91

Query:    71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
                LGI K DV++I   NS  F   F+G   IGA+++TANP YT  EL KQ+K S  KL+
Sbjct:    92 LYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLI 151

Query:   131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
             IT  +  DK+K+L     L+ + +                F  LI    +      V + 
Sbjct:   152 ITHSQYVDKLKNLGENLTLITTDEPTPENCLP--------FSTLITDDETNPFQETVDIG 203

Query:   191 QTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVF 248
               DAAAL +SSGTTG+ KGV+LTHK+ I   A  +   +  L  + + V+LCVLP+FH++
Sbjct:   204 GDDAAALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGDNPNLYLKSNDVILCVLPLFHIY 263

Query:   249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
              L+ +L + L+ G  V+ M KF+I   L  I+++RVT+  +VPP+++ALAKN  V  +D+
Sbjct:   264 SLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIALAKNPTVNSYDL 323

Query:   309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISL-----ENPLVGVRR 363
             SS++ V SGAAPLGKEL +  ++ +P A + Q GYGMTE    +S+     + P+    +
Sbjct:   324 SSVRFVLSGAAPLGKELQDSLRRRLPQAILGQ-GYGMTEAGPVLSMSLGFAKEPIP--TK 380

Query:   364 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 402
             SGS GT+V   E ++V ++T   L  NQ GEI +RG  +
Sbjct:   381 SGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQI 419

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 146/408 (35%), Positives = 228/408 (55%)

Query:     3 KSGYGR-DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
             +SG+ + +  + S R PL LP + S  +  F+  +S  +  K A IDA + + L+FS   
Sbjct:    13 RSGFCKSNSTFYSKRQPLSLPPNLSRDVTTFI--SSQPHRGKTAFIDAATGQCLTFSDLW 70

Query:    62 SIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
               V +V+    H +GI + DVVLI +PNSI  P+  L V+++GA+ +TAN + T  E+SK
Sbjct:    71 RAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANTLNTSGEISK 130

Query:   121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGS 180
             Q+ DSNP LV T  +L  K+  + +  VL    D                  ++++   S
Sbjct:   131 QIADSNPTLVFTTRQLAPKLP-VAISVVLT---DDEVYQELTSAIRVVGILSEMVKKEPS 186

Query:   181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQELVGELDHVVL 239
                + D  V Q D A +LYSSGTTG SKGVI +H+N  A  +  IS + +     D + +
Sbjct:   187 GQRVRD-RVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKR----DDIFI 241

Query:   240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
             C +PMFH +GL       +  G+ VV + +F +   + A+EK+R T   + PP+++A+  
Sbjct:   242 CTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVAMIN 301

Query:   300 NS-LVR-KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENP 357
             ++ L++ K+D+SSLK V  G APL KE+ E   +  P   I Q GY +TE+    +  N 
Sbjct:   302 DADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQ-GYALTESNGGGAFTNS 360

Query:   358 LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
                 RR G+AGTL + VEA+IV  +T + +  NQ GE+W++GP+++ G
Sbjct:   361 AEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKG 408

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 143/409 (34%), Positives = 226/409 (55%)

Query:     8 RDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKV 67
             + GIY S  P L LP DP+   V  LF  S  +    ALID+ +  S+S ++ + +V  +
Sbjct:    28 KTGIYTSKFPSLHLPVDPNLDAVSALF--SHKHHGDTALIDSLTGFSISHTELQIMVQSM 85

Query:    68 SHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 126
             +    H LG+ + DVV +  PNS++FP+ FL +I++GAI +T NP  ++ E+ KQV + +
Sbjct:    86 AAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIKKQVSECS 145

Query:   127 PKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD 186
               L  T  E  +K+  L +  + +                    F+ +++ S     +P 
Sbjct:   146 VGLAFTSTENVEKLSSLGVSVISVSES-----YDFDSIRIENPKFYSIMKESFGF--VPK 198

Query:   187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMI--SAHQ-ELVGELDHVVLCVL 242
               +KQ D AA++YSSGTTG SKGV+LTH+N IA+  L +   A Q E  G   +V L  L
Sbjct:   199 PLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGS-SNVYLAAL 257

Query:   243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
             P+ H++GLS+ +   L  G+ +V M +FD    +  IE++++T + VVPP+++AL K + 
Sbjct:   258 PLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALTKKAK 317

Query:   303 VRKFDI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGV 361
                 ++  SLK V SGAAPL ++ +ED  + +P   + Q GYGMTE+ A  +       +
Sbjct:   318 GVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQ-GYGMTESTAVGTRGFNSEKL 376

Query:   362 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
              R  S G L   ++A++V   +   LPP   GE+W++GP V  G  Y+N
Sbjct:   377 SRYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKG--YLN 423

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 149/423 (35%), Positives = 235/423 (55%)

Query:     4 SGYG-RDGIYRSLRPPLVLPS-DPSFSMVHF----LFRNS--ASYSSKLA----LIDADS 51
             SG+  R GIY SLRP L LP  D   S   F    L ++S  A+    +     L+++ S
Sbjct:    15 SGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTYLVNSSS 74

Query:    52 DESLSFSQFKSIVIKVSHSFRHL--GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA 109
              ++L++ +    V  ++ S R     +  ++V  I +P+S+  P+ +L +++IG + S A
Sbjct:    75 GDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIGVVVSPA 134

Query:   110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXX 169
             NP+ + SE+S QV+ S P +     +   K++  +LP   LG+                 
Sbjct:   135 NPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLP---LGT-----------VLMDST 180

Query:   170 XFHDLIELSGSVTDIP-DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
              F   +  S S +  P  V V Q+D AA+L+SSGTTG  KGV+LTH+N IA++ +  +HQ
Sbjct:   181 EFLSWLNRSDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAV--SHQ 238

Query:   229 ELVGE---LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 285
               + +    D V L  LP+FHVFG  +++   +  G  +V +G+F++E   +A+EKY+VT
Sbjct:   239 RTLQDPVNYDRVGLFSLPLFHVFGFMMMIR-AISLGETLVLLGRFELEAMFKAVEKYKVT 297

Query:   286 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGM 345
                V PP+I+AL K+ L +K+D+ SL+ +G G APLGK++ E  ++  P   I Q GYG+
Sbjct:   298 GMPVSPPLIVALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQ-GYGL 356

Query:   346 TETCAPI-SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 404
             TE+  P  S   P   V+  GS G +   +EA+IV   T + LPP + GE+W+RGP +  
Sbjct:   357 TESSGPAASTFGPEEMVKY-GSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMK 415

Query:   405 GIV 407
             G V
Sbjct:   416 GYV 418

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0X9	4CLL7_ARATH	6, ., 2, ., 1, ., -	0.6390	0.9288	0.7444	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ACLL12	4-coumarate-coa ligase (544 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	PAL	RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa)						•	•		0.966
	PAL5	SubName- Full=Phenylalanine ammonia-lyase; (712 aa)						•	•		0.962
	f5h	SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa)						•	•		0.947
	CCR	SubName- Full=Cinnamoyl CoA reductase; (339 aa)						•	•		0.947
	C4H3	SubName- Full=Trans-cinnamate 4-hydroxylase; (465 aa)						•	•		0.926
	C4H2	SubName- Full=Putative uncharacterized protein; (505 aa)						•	•		0.926
	C4H1	SubName- Full=Trans-cinnamate 4-hydroxylase; (505 aa)						•	•		0.903
	CAM1	RecName- Full=Caffeoyl-CoA O-methyltransferase 1; EC=2.1.1.104; AltName- Full=Trans-caffeoyl-Co [...] (248 aa)						•	•		0.903
	COMT1	SubName- Full=Caffeic acid 3-O-methyltransferase; (365 aa)						•	•		0.902
	gw1.8531.4.1	hypothetical protein (134 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	436
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-153
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-107
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-98
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	5e-88
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	5e-85
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	5e-85
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	8e-79
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	7e-69
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	8e-62
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-60
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	6e-60
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-56
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	7e-56
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-55
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-54
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-54
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-53
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-52
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-48
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	8e-46
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	2e-43
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	8e-43
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-42
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-42
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-40
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-39
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-39
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-38
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-38
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	1e-36
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-35
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	4e-35
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	4e-35
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	9e-35
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	1e-34
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-33
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-33
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	7e-33
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	9e-33
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	7e-32
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	1e-31
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	4e-31
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	7e-31
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-30
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	7e-30
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	8e-30
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	9e-30
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	1e-29
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-29
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-29
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-29
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	6e-29
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	1e-28
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-28
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-28
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-27
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	2e-27
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	7e-27
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	9e-27
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-26
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	4e-25
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-25
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-24
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	2e-24
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-24
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	1e-23
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	4e-23
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	4e-23
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	9e-23
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-22
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	8e-22
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	3e-21
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	6e-21
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	6e-21
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	1e-20
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	1e-20
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-20
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	4e-20
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	1e-19
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-19
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	7e-19
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	1e-18
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-18
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	6e-18
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	9e-18
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-17
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-17
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	2e-17
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	6e-17
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	1e-16
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-16
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	2e-16
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	5e-16
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	7e-16
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	8e-16
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	8e-16
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	2e-15
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-15
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	5e-15
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	6e-15
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-14
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-14
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-14
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	3e-14
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	3e-14
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	5e-14
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	8e-14
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-13
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-13
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-13
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	8e-13
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	2e-12
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	2e-12
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	3e-12
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	4e-12
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-12
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	5e-12
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	5e-12
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	7e-12
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	7e-12
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	8e-12
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-11
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	2e-11
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-10
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	7e-10
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	8e-10
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	8e-10
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	1e-09
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-09
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-09
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-09
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	4e-09
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-09
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	7e-09
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	1e-08
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	1e-08
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-08
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	3e-08
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	3e-08
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	5e-08
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	6e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	7e-08
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	8e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-07
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	1e-07
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	1e-07
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-07
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	2e-07
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	2e-07
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	3e-07
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	3e-07
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	5e-07
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	6e-07
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	9e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-06
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	1e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-06
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	6e-06
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	7e-06
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	7e-06
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	9e-06
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	1e-05
PLN03052	728	PLN03052, PLN03052, acetate--CoA ligase; Provision	1e-05
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-05
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	3e-05
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	1e-04
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	4e-04
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	5e-04
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	6e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	0.002
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	0.003

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  443 bits (1142), Expect = e-153
 Identities = 178/391 (45%), Positives = 241/391 (61%), Gaps = 19/391 (4%)

Query: 21  LPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKD 80
           +P D S      LF  ++ +  + ALIDA +  +L++++ + +V +++      G  K D
Sbjct: 1   IPKDLSLDSASLLF--ASEFGDRPALIDAATGRALTYAELERLVRRLAAGLAARGGRKGD 58

Query: 81  VVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKV 140
           VVL+ +PNS+ FP+ FL V++ GA+ +TANP+YT +E++KQVKDS  KL IT  EL +K+
Sbjct: 59  VVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKL 118

Query: 141 KDLNL-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLY 199
             L L P VLL S D  S+                  L     + P V +KQ D AAL Y
Sbjct: 119 ASLALEPVVLLDSADDGSA-------------AIDDLLFADEPEPPVVVIKQDDVAALPY 165

Query: 200 SSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259
           SSGTTG SKGV+LTH+N IA    + A +    + + V LCVLPMFH++GL+VIL   L+
Sbjct: 166 SSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLR 225

Query: 260 KGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAA 319
            G  VV M +FD+E  L AIEKY+VT   VVPPI+LAL K+ +V K+D+SSLK +GSGAA
Sbjct: 226 LGATVVVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAA 285

Query: 320 PLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 379
           PLGKEL E  +   PG  + Q GYGMTE+    ++        + GS G LV  VEA+IV
Sbjct: 286 PLGKELAEAFRARFPGVELGQ-GYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIV 344

Query: 380 SVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
             +T + LPPNQ GE+WVRGP V  G  Y+N
Sbjct: 345 DPETGESLPPNQPGELWVRGPQVMKG--YLN 373

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  325 bits (836), Expect = e-107
 Identities = 162/371 (43%), Positives = 218/371 (58%), Gaps = 17/371 (4%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           ALIDAD+   L+F+      ++++   R LG+ + DVV + +PNSI FP  FLG +A G 
Sbjct: 1   ALIDADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGG 60

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV----SSSG 160
           I S ANP YT  EL+ Q+K S PKL+   P+  DKVK+    A  LG   ++    S+  
Sbjct: 61  IVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEA---AKELGPVVRIIVLDSAPD 117

Query: 161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA 220
            + R   ++      E     T + D    + D AALLYSSGTTG+ KGV+L+HKN IA 
Sbjct: 118 GVLRIEDLLEPRLGAEDEFRPTPLID---GKDDTAALLYSSGTTGLPKGVMLSHKNIIAN 174

Query: 221 -SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI 279
            S +    +      + VVL  LP +H +GL+  L   L  G  V+ M KFD E  L+ I
Sbjct: 175 LSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLA-SLLCGATVIIMPKFDSETFLKLI 233

Query: 280 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
           EKY+VT  ++VPPI +ALAK+ LV K+D+SSL+++ SGAAPL KEL E+ +K  P  TI 
Sbjct: 234 EKYKVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIK 293

Query: 340 QVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 399
           Q GYGMTET    +L  P  G  + GS G LV  VEA+IV  D  K L PN+ GE+ V+G
Sbjct: 294 Q-GYGMTETGPATTLTPP--GDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKG 350

Query: 400 PNVTPGIVYIN 410
           P +  G  Y+N
Sbjct: 351 PQIMKG--YLN 359

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  304 bits (782), Expect = 1e-98
 Identities = 151/413 (36%), Positives = 232/413 (56%), Gaps = 35/413 (8%)

Query: 11  IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           I+RS  P + +P+     +  + F   + +S +  LID  +    +++  + +  +V+  
Sbjct: 9   IFRSKLPDIYIPNH--LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAG 66

Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
              LGI + DVV++  PN   F + FLG    GA+ +TANP YT +E++KQ K S  KL+
Sbjct: 67  LHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLI 126

Query: 131 ITVPELWDKVKDL-NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSV 189
           IT     DK+K L     V + + D              + F +L +   +  ++P+V +
Sbjct: 127 ITQSCYVDKLKGLAEDDGVTVVTID--------DPPEGCLHFSELTQADEN--ELPEVEI 176

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-------LDHVVLCVL 242
              D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE        D V+LCVL
Sbjct: 177 SPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPNLYFHSDDVILCVL 231

Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
           PMFH++ L+ +L   L+ G  ++ M KF+I   L  I++++VT+   VPPI+LA+AK+ +
Sbjct: 232 PMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV 291

Query: 303 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISL-----ENP 357
           V K+D+SS+++V SGAAPLGKEL +  +  +P A + Q GYGMTE    +++     + P
Sbjct: 292 VEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQ-GYGMTEAGPVLAMCLAFAKEP 350

Query: 358 LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
                +SGS GT+V   E +IV  +T   LP NQ GEI +RGP +  G  Y+N
Sbjct: 351 F--PVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKG--YLN 399

Length = 537

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  278 bits (712), Expect = 5e-88
 Identities = 151/415 (36%), Positives = 234/415 (56%), Gaps = 34/415 (8%)

Query: 10  GIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSH 69
           GIY S  PP+ LPSDP+   V F+F +  +++   ALID+ +  S+S+S+ + +V  ++ 
Sbjct: 23  GIYSSKHPPVPLPSDPNLDAVSFIF-SHHNHNGDTALIDSSTGFSISYSELQPLVKSMAA 81

Query: 70  SFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
              H +G+ + DVVL+  PNS++FP+ FL V+++G I +T NP  ++ E+ K+V D +  
Sbjct: 82  GLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVG 141

Query: 129 LVITVPELWDKVKDLNLPAVLLGSKDKVSSSG-LISRSSKIVSFHDLIELSGSVTDIPDV 187
           L  T PE  +K+  L +P +       V  +    S+  +   F++LI+       +P  
Sbjct: 142 LAFTSPENVEKLSPLGVPVIG------VPENYDFDSKRIEFPKFYELIKEDFDF--VPKP 193

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS---LMISAHQELVGELDHVVLCVLPM 244
            +KQ D AA++YSSGTTG SKGV+LTH+N IA     +   A Q      D+V L  LPM
Sbjct: 194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM 253

Query: 245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL-V 303
           FH++GLS+ +   L  G+ +V M +FD    ++ I++++VT + VVPPI++AL K +  V
Sbjct: 254 FHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV 313

Query: 304 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVR- 362
               + SLK V  GAAPL  + ++D  + +P     Q GYGMTE+ A        VG R 
Sbjct: 314 CGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQ-GYGMTESTA--------VGTRG 364

Query: 363 -------RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
                  +  S G L   ++A++V   T   LPP   GE+W++GP V  G  Y+N
Sbjct: 365 FNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKG--YLN 417

Length = 560

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  267 bits (685), Expect = 5e-85
 Identities = 119/376 (31%), Positives = 184/376 (48%), Gaps = 43/376 (11%)

Query: 30  VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
              L R +  +  + AL        L++++   +  + +   + LG+ K D V +  PN 
Sbjct: 2   ADLLERAARRFPDRPALTF--FGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNC 59

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL 149
             FPI + G++  GA+    NP+YT  EL  Q+ DS  K++I                  
Sbjct: 60  PQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVA---------------- 103

Query: 150 LGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG 209
                              +SF D +     +    ++S    D A L Y+ GTTGV KG
Sbjct: 104 -------------------ISFEDALASGAPLPLPVELS--PDDLAVLQYTGGTTGVPKG 142

Query: 210 VILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK 269
            +LTH+N +A    I+A  + + E +   L  LP+FH+FGL+V +   L+ G   V +  
Sbjct: 143 AMLTHRNLVANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPN 202

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC 329
           F     L+ I++YR T++  VP +  AL  +   +K+D SSL+L  SG APL  E+ E  
Sbjct: 203 FRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAERF 262

Query: 330 QKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP 389
            +   GA + + GYG+TET +P++  NPL G R+ GS G  + G E +IV  +    LPP
Sbjct: 263 -EEKTGAPLVE-GYGLTET-SPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEG-NELPP 318

Query: 390 NQLGEIWVRGPNVTPG 405
            ++GE+ VRGP V  G
Sbjct: 319 GEVGELVVRGPQVMKG 334

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  269 bits (689), Expect = 5e-85
 Identities = 134/390 (34%), Positives = 189/390 (48%), Gaps = 12/390 (3%)

Query: 24  DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
               ++   L R +     + ALI       L++ +      +++ + + LG+   D V 
Sbjct: 8   TAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVA 67

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           I  PNS  F I FL  +  GA+A   NP  T  EL+  + D+  K++IT  E    ++ +
Sbjct: 68  ILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAV 127

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
                       V      +     ++   L    G   D     V   D A LLY+SGT
Sbjct: 128 ----AEALPVVLVVLLVGDADDRLPITLEALAA-EGPGPDADARPVDPDDLAFLLYTSGT 182

Query: 204 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           TG+ KGV+LTH+N +A +  I+A        D VVL  LP+FH+FGL V L   L  G  
Sbjct: 183 TGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGT 242

Query: 264 VV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS-LKLVGSGAAP 320
           +V  S   FD E  L  IEKY+VTV   VP  +  L  N      D+SS L+LV SG AP
Sbjct: 243 LVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAP 302

Query: 321 LGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVS 380
           L  EL+E  ++      I + GYG+TET   +++  P   + + GS G  + GVE +IV 
Sbjct: 303 LPPELLERFEERFGPIAILE-GYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVD 361

Query: 381 VDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            D  + L P ++GEIWVRGPNV  G  Y N
Sbjct: 362 PDGGEVL-PGEVGEIWVRGPNVMKG--YWN 388

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  249 bits (638), Expect = 8e-79
 Identities = 109/352 (30%), Positives = 175/352 (49%), Gaps = 13/352 (3%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           ++ +      +++ + R LG+   D V I  PNS  + +  L V+  GA     +P    
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
             L+  ++DS  K++IT  EL  K+ ++ L  ++L +   V   G        +   D  
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGE------GLDLLDDE 114

Query: 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 235
            L+G+  + P   V   D A ++Y+SGTTG  KGV+LTH+N +A +  ++    L     
Sbjct: 115 LLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTP--G 172

Query: 236 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRVTVWWVVPPI 293
             VL +LP+     +  I    L  G  +V + KF  D    L  IEKY+VTV + VP +
Sbjct: 173 DRVLLLLPLHFDGSVWEIFGP-LLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTL 231

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPIS 353
           +  L K    +K+D+SSL+LV SG  PL  EL+   ++   G  +   GYG TET    +
Sbjct: 232 LRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVN-GYGPTETTVVAT 290

Query: 354 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
              P     + GS G  + GVE +++  +  +P+PP ++GE+ +RGP V  G
Sbjct: 291 ANLPGDPEVKPGSIGRPLPGVEVKVLDEEG-EPVPPGEVGELCIRGPGVARG 341

Length = 412

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  227 bits (581), Expect = 7e-69
 Identities = 132/403 (32%), Positives = 222/403 (55%), Gaps = 23/403 (5%)

Query: 11  IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           I+RS  P + +P     ++  F+ +++  Y+ K+A ++A + +++++ +      + + +
Sbjct: 14  IFRSRYPSVPVPDK--LTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKA 71

Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
            R LG+ K  VV++  PN   + I  LG++A G + S ANP    SE+ KQ + +  KL+
Sbjct: 72  LRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLI 131

Query: 131 ITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS-V 189
           +T    + KVK L LP ++LG            +    V++ +L+E +    D  D   +
Sbjct: 132 VTNDTNYGKVKGLGLPVIVLGE----------EKIEGAVNWKELLEAADRAGDTSDNEEI 181

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHV 247
            QTD  AL +SSGTTG+SKGV+LTH+N +A   S + S   E++G++  V L ++P FH+
Sbjct: 182 LQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQV--VTLGLIPFFHI 239

Query: 248 FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD 307
           +G++ I    L+    VV M +F++   L A+    V+   +VPPIIL L KN +V +FD
Sbjct: 240 YGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFD 299

Query: 308 ISSLKL--VGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTE-TCAPISLENPLV--GVR 362
           +S LKL  + + AAPL  EL+   +   PG  + Q  YG+TE +C  ++  +P    G+ 
Sbjct: 300 LSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQV-QEAYGLTEHSCITLTHGDPEKGHGIA 358

Query: 363 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           +  S G ++  +E + +  DT + LP N  GE+ VR   V  G
Sbjct: 359 KKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQG 401

Length = 546

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  208 bits (532), Expect = 8e-62
 Identities = 115/367 (31%), Positives = 175/367 (47%), Gaps = 28/367 (7%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           ++++    V +++++ R LG+ K D V +F  NS  +   +  V  IGA+    N     
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDL--NLPAV----LLGSKDKVSSSGLISRSSKIV 169
            E++  + D+  ++V+   E    +  +   LP V    + G       +  +       
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGE----- 147

Query: 170 SFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 229
            + +L  L+ +        + + DAAA+LY+SGTTG  KGV+L+H+N    SL + A   
Sbjct: 148 -YEEL--LAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL- 203

Query: 230 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
            +   D V L ++PMFHV    +  Y  L  G   V   +FD E  L  IE  RVT ++ 
Sbjct: 204 KLSRDD-VYLVIVPMFHVHAWGLP-YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFA 261

Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
           VP I   L K       D SSL+LV  G A L   L+ + ++   G  + Q GYGMTET 
Sbjct: 262 VPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKE-KFGIDLVQ-GYGMTETS 319

Query: 350 APISLENP----LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVT 403
             +S+  P         +  SAG  + GVEA+IV  D    LPP+  ++GEI VRGP + 
Sbjct: 320 PVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLM 378

Query: 404 PGIVYIN 410
            G  Y N
Sbjct: 379 QG--YWN 383

Length = 521

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  203 bits (520), Expect = 3e-60
 Identities = 109/386 (28%), Positives = 182/386 (47%), Gaps = 23/386 (5%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
           ++   L R +  +  K A +  D  + L++++  + V + + +   LGI K D V I+AP
Sbjct: 6   TLPELLARAARRFGDKEAYVFGD--QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAP 63

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW--DKVKDLNL 145
           NS H+ I  LG +  GA+    N  YT  E +  +   + K +  +      D      L
Sbjct: 64  NSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRL 123

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
           PA  L       +      + K+ +F D +  +G   +     V   D A +L++SGTTG
Sbjct: 124 PA--LEHVVICETEEDDPHTEKMKTFTDFLA-AGDPAERA-PEVDPDDVADILFTSGTTG 179

Query: 206 VSKGVILTHKNFIAASLMISAHQELVGELDHV----VLCVLPMFHVFGLSVILYDQLQKG 261
             KG +LTH+       ++S   +    L        L   P FHVFG    +   L +G
Sbjct: 180 RPKGAMLTHRQ------LLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRG 233

Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
             ++ +  FD +   R IE  R+TV    P +  +L ++      D+SSL+L  +GAA +
Sbjct: 234 ATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASM 293

Query: 322 GKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRR--SGSAGTLVAGVEAQIV 379
              L+E  +  +    +   GYG++E  + ++  N L   R+  +G+ GT +AGVE +IV
Sbjct: 294 PVALLERFESELGVDIVLT-GYGLSE-ASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIV 351

Query: 380 SVDTLKPLPPNQLGEIWVRGPNVTPG 405
           +    + +P  ++GE+ VRGPNV  G
Sbjct: 352 NELG-EEVPVGEVGELLVRGPNVMKG 376

Length = 513

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  203 bits (519), Expect = 6e-60
 Identities = 93/365 (25%), Positives = 157/365 (43%), Gaps = 21/365 (5%)

Query: 43  KLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99
             A+I   +      L++   +  V +++++ + LG  K D V I+ PNS    I  L  
Sbjct: 26  DTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLAT 85

Query: 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSS 159
             IGAI +  +P  +   ++ ++ D  PK++I     +   K++ L        D V SS
Sbjct: 86  ARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDA----DAVLSS 141

Query: 160 GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA 219
            ++      + + + +E +          +   D   LLY+SGTTG  KG++ +H  ++ 
Sbjct: 142 VVVVP-RLGLWYDEAVEKAS--EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLV 198

Query: 220 ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG---KFDIEMAL 276
              + +     +   D           ++GL   ++  L  G   V       +  E   
Sbjct: 199 EHRLTAKFHGDLLPGD-RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLW 257

Query: 277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336
            A+EKY+VT++   P  +  L K  L   +D+SSL+++GS   PL  E  E     + G 
Sbjct: 258 EALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GV 316

Query: 337 TIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 396
            I    YG TET        P V   ++GS+G  + G   + V  D   P+PP   GE+ 
Sbjct: 317 WILD-IYGQTETGMGFIAGRPPV---KNGSSGLPLPGYAVRRV-DDEGNPVPPGV-GELV 370

Query: 397 VRGPN 401
           VR P 
Sbjct: 371 VRLPW 375

Length = 528

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  189 bits (483), Expect = 2e-56
 Identities = 85/219 (38%), Positives = 117/219 (53%), Gaps = 7/219 (3%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A + Y+SGTTG  KG +LTH+N +     I+    L        L  +P+FHVFGL +
Sbjct: 3   DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL--TEGDRTLVPVPLFHVFGLVL 60

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK 312
            +   L  G  +V M KFD   ALR IE+ R+T    VP + +AL ++    KFD+SSL+
Sbjct: 61  GVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLR 120

Query: 313 LVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGV-RRSGSAGTLV 371
              SG AP+  EL+   ++  P A I   GYGMTET    +  +       R G+ G  +
Sbjct: 121 TGISGGAPVPPELVRRIREEFPMAEI-TTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPL 179

Query: 372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            GVE +IV  D    +PP ++GEI VRG +V  G  Y N
Sbjct: 180 PGVEVKIVDPDG-GEVPPGEVGEICVRGYSVMKG--YYN 215

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  187 bits (478), Expect = 7e-56
 Identities = 93/214 (43%), Positives = 129/214 (60%), Gaps = 7/214 (3%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A +LY+SGTTG  KGV+L+H+N +A +  ++    L  E D V+L VLP+FHV G   
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGL-TEGD-VLLSVLPLFHVVGGGS 58

Query: 253 ILYDQLQKGNCVVSMGKFD-IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
            L   L  G  VV    F      L  IE+YRVTV + VP +  ALAK +  R +D+SSL
Sbjct: 59  GLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSL 118

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV 371
           +L+ SG  PL  EL+E  ++  PGA I + GYG+TET   ++  NP   +++ G+ G  V
Sbjct: 119 RLLISGGEPLSPELLERFEE-RPGAPILE-GYGLTETS-VVTSTNPDSELKKPGTVGRPV 175

Query: 372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            GVE ++V  +  KPLPP ++GE+ VRGP V  G
Sbjct: 176 PGVEVRVVDEEG-KPLPPGEVGELVVRGPWVMKG 208

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  191 bits (487), Expect = 3e-55
 Identities = 118/406 (29%), Positives = 191/406 (47%), Gaps = 41/406 (10%)

Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS-HSFRHLGITKKDVVL 83
           P  S+ H L  ++  Y  K A++      ++S+ +      +++ +  +  G+ K D VL
Sbjct: 8   PETSLFHNLEVSARRYPDKTAIVFYGR--AISYRELLEEAERLAGYLQQECGVRKGDRVL 65

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           ++  NS  F I +  ++   A+    NP+    EL+  V DS  ++ I   EL  KV   
Sbjct: 66  LYMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPA 125

Query: 144 N----LPAVLLGS-KDKVSSSGLISRSSKIVSFHDLIELS-GSVTDI----------PDV 187
                L  V++    D + +   I+  + + +   L  L+ G V             P  
Sbjct: 126 VGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPH 185

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHK----NFIAASLMISAHQELVGELDHVVLCVLP 243
           +    D A L Y+SGTTGV KG + TH+    N + + L  ++  E       VVL VLP
Sbjct: 186 TAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPE------SVVLAVLP 239

Query: 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 303
           +FHV G+   +   +  G  VV M ++D E A R IE+YRVT W  +P +++    +  +
Sbjct: 240 LFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGL 299

Query: 304 RKFDISSLKLVGSGAAPL----GKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLV 359
            + D+SSL+ +G G A +     + L E       G   +  GYG+TET A  +  NP  
Sbjct: 300 AERDLSSLRYIGGGGAAMPEAVAERLKELT-----GLD-YVEGYGLTETMAQ-THSNPP- 351

Query: 360 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
              +    G    GV+A+++  +TL+ LPP ++GEI V GP V  G
Sbjct: 352 DRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKG 397

Length = 546

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  183 bits (468), Expect = 2e-54
 Identities = 87/213 (40%), Positives = 118/213 (55%), Gaps = 6/213 (2%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A +LY+SGTTG  KGV+LTH+N +A    ++A   +      V L   P++H  G   
Sbjct: 2   DPALILYTSGTTGRPKGVMLTHRNLLAN--AVNALAGVDLSPGDVYLLAAPLYHAAGGLF 59

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK 312
           +L   L  G  VV M KFD E  L  IE++RVT  ++VP +   L +     ++D+SSL+
Sbjct: 60  LLP-ALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLR 118

Query: 313 LVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVA 372
           L+  GAAP+  EL         G    Q GYGMTET    +L +P   +R+ GS G  V 
Sbjct: 119 LIIYGAAPMPAELKR-AMIEWFGPVFVQ-GYGMTETGPTTTLLSPEDWLRKLGSVGRPVP 176

Query: 373 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           GVE +IV  D  + LPP ++GEI VRGP V  G
Sbjct: 177 GVEVRIVDEDG-RELPPGEVGEIVVRGPAVMAG 208

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  184 bits (470), Expect = 8e-54
 Identities = 96/354 (27%), Positives = 157/354 (44%), Gaps = 65/354 (18%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
            +++++   +V +++   +  G+ K D V ++  NS  F I +  ++  GA+    NP+ 
Sbjct: 1   VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
             +EL   + DS  +++I   EL D        AV                         
Sbjct: 61  REAELEHILNDSGARVLIVGSELDD-------VAV------------------------- 88

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                     IP             Y+SGTTG+ KG + TH+  +A     +A       
Sbjct: 89  ----------IP-------------YTSGTTGLPKGCMHTHRTVLAT----AAASAAWSG 121

Query: 234 LDH--VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
           L    V+L  LP+FHV G+   +   +  G  +V + ++D E A RAIE+YRVT W  + 
Sbjct: 122 LTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIV 181

Query: 292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAP 351
            +++ L  +     +D+SSLK+VG G A L   + E  +       +++ GYG+TET   
Sbjct: 182 TMVVDLLAHPRFADYDLSSLKVVGGGGAALPPAVAERLKALT--GLLYEEGYGLTETHTC 239

Query: 352 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
                P     +    G  V G +A+++  +T + LPP + GEI VRGP V  G
Sbjct: 240 THFNPPDRP--KPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKG 291

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  187 bits (477), Expect = 1e-53
 Identities = 134/414 (32%), Positives = 218/414 (52%), Gaps = 35/414 (8%)

Query: 18  PLVLPSDPSFSM--VH-FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL 74
           P  +PS  S+ +  +H ++ + ++ Y  K AL     D  ++FS F   V + ++  + L
Sbjct: 12  PEEIPSTISYDIQPLHKYVEQMASRYPEKKALHFLGKD--ITFSVFHDKVKRFANYLQKL 69

Query: 75  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134
           G+ K D V I  PN     I + G +  G I    NP+YT  EL  Q+ DS  K+++ + 
Sbjct: 70  GVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLD 129

Query: 135 ELWDKVKD------------------LNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176
            ++ +V +                  L  P  LL    +   S L+ +    VS  + I 
Sbjct: 130 LVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVK----VSESETIH 185

Query: 177 LSGSVTDIPDVSVK-----QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           L  SV    +  V+     + D A L Y+ GTTG  KGV+LTHKN ++ +LM        
Sbjct: 186 LWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNC 245

Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
            E + VVL VLP FHV+G++ ++   + +G  +V + KFD++M   AI+K++VT++   P
Sbjct: 246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAP 305

Query: 292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAP 351
            I +AL  + L++++DISS++   SG+APL  E+ E  +  + G  + + GYG+TE+ +P
Sbjct: 306 TIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFET-VTGGKLVE-GYGLTES-SP 362

Query: 352 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           ++  N L   R  GS G      EA I+S++T + LPP ++GEI V+GP +  G
Sbjct: 363 VTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKG 416

Length = 563

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  184 bits (467), Expect = 2e-52
 Identities = 124/403 (30%), Positives = 202/403 (50%), Gaps = 51/403 (12%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L + +A Y  + AL     D  +++++ +++    + +    G  K   V ++  N+  
Sbjct: 26  LLSKAAADYGPRPAL--EFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPD 83

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
            PI F G +  GA     +P+     LS ++ DS  +L+IT         DL   A LL 
Sbjct: 84  HPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLIT--------SDL---AALLP 132

Query: 152 SKDKVSSSGLISR---------------------SSKIVSFHDLIELSGSVTDIPDVSVK 190
              K    GL+ R                       +IV++ D ++ + +  + P  +V 
Sbjct: 133 MALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWP--AVT 190

Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD-------HVVLCVLP 243
             D A L Y+ GTTG+ KG +LTH N  +A   +S + ++ G+           V+CVLP
Sbjct: 191 PDDVALLQYTGGTTGLPKGAMLTHGNLTSA---VSIY-DVWGKPSRATRGDVERVICVLP 246

Query: 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 303
           +FH++ L+VIL   L++G+ +    +FD+    R IE+ R TV+  VP + +ALA +  +
Sbjct: 247 LFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSL 306

Query: 304 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRR 363
            K D+SSL  +GSG APL  E+    ++        + G+GMTETC+P    +P  G  +
Sbjct: 307 EKRDLSSLATIGSGGAPLPVEVANFFERKT--GLKLKSGWGMTETCSP-GTGHPPEGPDK 363

Query: 364 SGSAGTLVAGVEAQIVSV-DTLKPLPPNQLGEIWVRGPNVTPG 405
            GS G ++ G+E  +VS+ D  K LPP ++GE+ +RGPNVT G
Sbjct: 364 PGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRG 406

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  173 bits (440), Expect = 3e-48
 Identities = 116/417 (27%), Positives = 184/417 (44%), Gaps = 50/417 (11%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           ++V       A +  + AL     D    + ++++    V + +   R LG+   D V I
Sbjct: 33  TLVDLYDNAVARFGDRPAL-----DFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAI 87

Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
             PN     + F  V+ +GA+    NP+YT  EL    +D   ++ I    +WDKV    
Sbjct: 88  VLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAI----VWDKVAPTV 143

Query: 145 LPAVLLGSKDKVSSSGLIS-----------------RSSK---------IVSFHDLIE-- 176
                    + + S  +I+                 R ++          V +  L++  
Sbjct: 144 ERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAA 203

Query: 177 --LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 234
               GS    P  +    D A +LY+SGTTG  KG  LTH+N  A +    A    +G+ 
Sbjct: 204 IGGDGSDVSHPRPT--PDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG 261

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
              VL  LPMFH +GL++ L   +  G  +V +   DI++ L A++K+  T    VPP+ 
Sbjct: 262 PERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLY 321

Query: 295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISL 354
             +A+ +  R  D+S ++   SGA  L    +E  +K   G  +   GYG+TET +PI +
Sbjct: 322 EKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLV--EGYGLTET-SPIIV 378

Query: 355 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTL-KPLPPNQLGEIWVRGPNVTPGIVYIN 410
            NP+   RR G  G      E +IV  +   + +P  + GE+ VRGP V  G  Y N
Sbjct: 379 GNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKG--YWN 433

Length = 573

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  164 bits (418), Expect = 8e-46
 Identities = 98/380 (25%), Positives = 156/380 (41%), Gaps = 59/380 (15%)

Query: 33  LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
           L  N+A +  + A++D      L++ +  + V +++     LGI   D VL+  PN   F
Sbjct: 21  LAANAARHPDRTAVVDGP--RRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEF 78

Query: 93  PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGS 152
            I +  +  +GAI   A P +   E+    + S  K  I                     
Sbjct: 79  VILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYIIADRF---------------- 122

Query: 153 KDKVSSSGLISRSSKIVSFHDLIELSGSV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
                            S  D   L+  +  ++PDV       A    S GTTG+ K + 
Sbjct: 123 -----------------SGFDYAALARELLEELPDV-------ALFQLSGGTTGLPKLIP 158

Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGL-SVILYDQLQKGNCVVSMG 268
            TH +++ ++   SA       LD   V L VLP  H F L S  L   L  G  VV   
Sbjct: 159 RTHNDYLYSAR-ASAE---ACGLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHH 214

Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
               ++A   IE+ +VT   +VP ++    + +   + D+SSL+++  G APL  EL   
Sbjct: 215 PPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQVGGAPLSPELARR 274

Query: 329 CQKNIPGATIFQVGYGMTE---TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK 385
            ++   G  + QV +GM E       +  + P V +R  G    +    E +IV     +
Sbjct: 275 VEE-RLGCPLQQV-FGMAEGLVNYTRLD-DPPDVIMRTQGRP--ISPADEIRIVDDQG-E 328

Query: 386 PLPPNQLGEIWVRGPNVTPG 405
           P+PP ++GE+  RGP    G
Sbjct: 329 PVPPGEVGELLTRGPYTIRG 348

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  155 bits (394), Expect = 2e-43
 Identities = 92/226 (40%), Positives = 118/226 (52%), Gaps = 23/226 (10%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A +L++SGTTG  KGV LTHKN +A++  I+   +L    D   L V+P+FH+ GL V
Sbjct: 3   DPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKL-TPSDR-CLNVMPLFHIHGLIV 60

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL---AKNSLVRKFDIS 309
            L   L  G  VV   KF        I KYRVT +  VP I   L   AK +  +     
Sbjct: 61  SLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPP--P 118

Query: 310 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQV----GYGMTETCAPISLENPL-VGVRRS 364
            L+ + S +APL   +++  +K       F V     YGMTE  A     NPL   VR+ 
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKR------FGVPVLEAYGMTEA-AHQIASNPLPPLVRKP 171

Query: 365 GSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           GS G   AGVE  I+  D  +PLPP Q GEI +RGPNVT G  Y+N
Sbjct: 172 GSVG-RPAGVEVAILDDD-GRPLPPGQEGEIVIRGPNVTAG--YLN 213

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  156 bits (397), Expect = 8e-43
 Identities = 107/380 (28%), Positives = 169/380 (44%), Gaps = 61/380 (16%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           + A+   +  + ++F +    V+ V+     LG+ K D V +   N +   +    +  +
Sbjct: 18  RTAIEFEE--KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQL 75

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA+A   N   +  EL  Q+ D+  K +IT  +   K+                      
Sbjct: 76  GAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLI--------------------- 114

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQT----DAAALLYSSGTTGVSKGVILTHKNFI 218
                 V F +L+          +  +++     + A ++Y+SGTTG  KGVI T+ N  
Sbjct: 115 --PGISVKFAELMN-----GPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHW 167

Query: 219 AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRA 278
             S + SA    + E D   L  +P+FH+ GLS IL   +  G  VV + KFD E   + 
Sbjct: 168 W-SAVGSALNLGLTEDD-CWLAAVPIFHISGLS-ILMRSVIYGMRVVLVEKFDAEKINKL 224

Query: 279 IEKYRVTVWWVVPPIILALAK-------NSLVRKFDISSLKLVGSGAAPLGKELMEDCQ- 330
           ++   VT+  VV  ++  L +        S  R        L+G G AP  K L+E C+ 
Sbjct: 225 LQTGGVTIISVVSTMLQRLLERLGEGTYPSSFRCM------LLGGGPAP--KPLLEQCKE 276

Query: 331 KNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN 390
           K IP   ++Q  YGMTET + I   +P   + + GSAG  +   E +I        +PP 
Sbjct: 277 KGIP---VYQ-SYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIE--KDGVVVPPF 330

Query: 391 QLGEIWVRGPNVTPGIVYIN 410
           + GEI V+GPNVT G  Y+N
Sbjct: 331 EEGEIVVKGPNVTKG--YLN 348

Length = 483

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  154 bits (393), Expect = 2e-42
 Identities = 98/370 (26%), Positives = 147/370 (39%), Gaps = 95/370 (25%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112
           +++++++    V +++     LG+   D V I A N   + I  L ++A GA+     P 
Sbjct: 4   QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63

Query: 113 YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFH 172
            +  E++  + DS  ++V                                          
Sbjct: 64  SSPEEVAYILNDSGARVVF----------------------------------------- 82

Query: 173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 232
                   V D PD      D A L+Y+SGTTG  KGV+LTH+N +A     +A  E++ 
Sbjct: 83  --------VEDKPD------DLATLIYTSGTTGNPKGVMLTHRNLLA---QAAALLEVIP 125

Query: 233 -ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRVTVWWV 289
                 VL  LP+ HVF   +  Y  L  G  V     F    E  L  + + R TV++ 
Sbjct: 126 LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVN----FAESPETLLEDLREVRPTVFFA 181

Query: 290 VP--------PIILALAKNSLVRK--FD----ISSLKLVGSGAAPLGKELMEDCQKNIPG 335
           VP         I   +A    +++  F        L+   SG APL  E++E       G
Sbjct: 182 VPRVWEKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFF--RALG 239

Query: 336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 395
             I + GYG+TET    ++  P  G  R G+ G  + GVE +I              GEI
Sbjct: 240 IPILE-GYGLTETSGVATVNRP--GDIRIGTVGKPLPGVEVRIAED-----------GEI 285

Query: 396 WVRGPNVTPG 405
            VRGPNV  G
Sbjct: 286 LVRGPNVMKG 295

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  157 bits (399), Expect = 2e-42
 Identities = 100/412 (24%), Positives = 159/412 (38%), Gaps = 81/412 (19%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112
           E++++ +    V  ++     LGI   D V IFA N   + I  L ++A+GA++      
Sbjct: 44  EAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYST 103

Query: 113 YTVSELSKQVKDSNPKLVIT-VPELWDKVKDLNLPAVLLGSKDKVSSS------GLISRS 165
            T  +L+  + +S  K++     EL D V  + L          V            +  
Sbjct: 104 STPEQLAYILNESESKVIFVENQELLDLVLPV-LEDCPKVVDLIVIIDLVREAVEAKALV 162

Query: 166 SKIVSFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 223
            ++     +         +       K  D A ++Y+SGTTG  KGV+LTH+N +A    
Sbjct: 163 LEVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLA---Q 219

Query: 224 ISAHQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEK 281
           ++   E++  +     VL  LP+ H+F  +      L  G  V+   K D    L  +++
Sbjct: 220 VAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLF--KEDPRTLLEDLKE 277

Query: 282 YRVTVWWVVPPI-------IL-ALAKNSLVRK---------------------------- 305
            R TV   VP +       I+  +AK   VR+                            
Sbjct: 278 VRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLL 337

Query: 306 -FDI-----------SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPIS 353
             D              ++   SG APL  EL+   +    G  I + GYG+TET A +S
Sbjct: 338 VADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR--SLGIPILE-GYGLTETSAVVS 394

Query: 354 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           +  P       G+ G  + G+E +I              GEI VRGPNV  G
Sbjct: 395 VNPP--DRFVLGTVGKPLPGIEVKIADD-----------GEILVRGPNVMKG 433

Length = 613

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  150 bits (381), Expect = 3e-40
 Identities = 112/381 (29%), Positives = 185/381 (48%), Gaps = 23/381 (6%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L R++  Y  K AL+  D   S ++++  + V +V+ +   LG+ K D V     NS  
Sbjct: 16  ILRRSARRYPDKTALVFGD--RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDA 73

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           + + +L     GA+    N + T  EL+  +  S  +  +  P L    +       LL 
Sbjct: 74  YALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAA---LALLP 130

Query: 152 SKDKVSSSGLISRSS--KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG 209
               + S  L  R +    + F D  E +GSV + PDV +   D A +LY+SGT  + KG
Sbjct: 131 VDTLILSLVLGGREAPGGWLDFADWAE-AGSVAE-PDVELADDDLAQILYTSGTESLPKG 188

Query: 210 VILTHKNFIA--ASLMISAHQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265
            +LTH+  IA   S +++      G++  D + L  LP++H   L V L   L  G   V
Sbjct: 189 AMLTHRALIAEYVSCIVA------GDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNV 242

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
            +   D E+ LR IE  R+T ++  P + ++L ++      D+SSL+    GA+ +  E+
Sbjct: 243 ILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEV 302

Query: 326 MEDCQKNIPGATIFQVGYGMTETCAPI-SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL 384
           +++ ++ +PG   +   YG TE  AP+ ++  P   +RR GSAG  V  VE ++V  D  
Sbjct: 303 LKELRERLPGLRFYNC-YGQTEI-APLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDG 359

Query: 385 KPLPPNQLGEIWVRGPNVTPG 405
             + P ++GEI  R P +  G
Sbjct: 360 NDVAPGEVGEIVHRSPQLMLG 380

Length = 523

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  149 bits (378), Expect = 3e-39
 Identities = 103/395 (26%), Positives = 166/395 (42%), Gaps = 46/395 (11%)

Query: 46  LIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           L+DAD     E+ ++++  + V + ++    LG+   DVV    PN         G    
Sbjct: 47  LLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG---- 102

Query: 103 GAIASTANPVYTVSE---LSKQVKDSNPKLVITV-----PELWDKVKDL-----NLPAVL 149
           G  A  ANP+  + E   +++ ++ +  K+++T+      ++W KV ++      L  V+
Sbjct: 103 GEAAGIANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVV 162

Query: 150 L--GSKDKVSSSGLISRSS------KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
               ++       L           +I+ F   +             +   D AA  ++ 
Sbjct: 163 EVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTG 222

Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG+ K    TH N +A + +      L       V C LP+FHV  L V     L +G
Sbjct: 223 GTTGMPKLAQHTHGNEVANAWLG--ALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARG 280

Query: 262 NCVV---SMGKFDIEMALR---AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             VV     G     +       +E+YR+     VP +  AL +   V   DISSL+   
Sbjct: 281 AHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP-VDGHDISSLRYAL 339

Query: 316 SGAAPLGKELMEDCQKNIPGATIFQVGYGMTE-TCAPISLENPLVGVRRSGSAGTLVAGV 374
            GAAPL  E+    +    G  I + GYG+TE TC   S  NP  G RR GS G  +   
Sbjct: 340 CGAAPLPVEVFRRFEAAT-GVRIVE-GYGLTEATCV--SSVNPPDGERRIGSVGLRLPYQ 395

Query: 375 EAQIVSVD----TLKPLPPNQLGEIWVRGPNVTPG 405
             ++V +D     L+    +++G + + GPNV  G
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSG 430

Length = 632

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  146 bits (370), Expect = 3e-39
 Identities = 77/216 (35%), Positives = 111/216 (51%), Gaps = 9/216 (4%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A ++Y+SGTTG  KGV+LTH N  A +  +          D ++   LP+ HV GL  
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTAS-DVLLHA-LPLHHVHGLFN 146

Query: 253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDIS 309
            L+  L  G  V  + +FD +         R+TV+  VP I   +L   +          
Sbjct: 147 ALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAAAR 206

Query: 310 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGT 369
           +L+L  SG+A L   ++E  ++   G T+ +  YGMTET   ++L NPL G RR G+ G 
Sbjct: 207 NLRLFVSGSAALPVPVLERWEE-RTGHTLLE-RYGMTETG--MALSNPLDGERRPGTVGL 262

Query: 370 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            + GVE +IV  D  +PL   ++GEI VRGPNV   
Sbjct: 263 PLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSE 298

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  145 bits (368), Expect = 1e-38
 Identities = 94/363 (25%), Positives = 166/363 (45%), Gaps = 30/363 (8%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIA 101
           ++A+I    +E +++ Q    V KV+    + L + K + + I + NS+ + +    +  
Sbjct: 18  RIAIIT--EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAK 75

Query: 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGL 161
           +  IA   N   T +EL  Q+KDS                      VL   K   + +  
Sbjct: 76  VECIAVPLNIRLTENELIFQLKDSGTT-------------------VLFVEKTFQNMALS 116

Query: 162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL--YSSGTTGVSKGVILTHKNFIA 219
           + + S +     +  L        D  V++ ++A+ +  Y+SGTTG  KG +LT +N   
Sbjct: 117 MQKVSYVQRVISITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFW 176

Query: 220 ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAI 279
            +L  +   +L      +VL  LP+FH+ G+ +  +  L  G  ++   KF+   AL  I
Sbjct: 177 NALNNTFAIDLTMHDRSIVL--LPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMI 234

Query: 280 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
           EK++VTV   VP I  AL   S     ++ S++   +G AP  +ELM +         +F
Sbjct: 235 EKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR---GFLF 291

Query: 340 QVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 399
             G+GMTET   + + +     R+ GS G  V   + +++  +    +   ++GE+ +RG
Sbjct: 292 GQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENK-NKVEVGEVGELLIRG 350

Query: 400 PNV 402
           PNV
Sbjct: 351 PNV 353

Length = 496

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  145 bits (369), Expect = 1e-38
 Identities = 103/397 (25%), Positives = 176/397 (44%), Gaps = 39/397 (9%)

Query: 33  LFRNSASYSSKLALIDADSDESL---SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           +  ++A Y     ++    D S+   +++ F   V +++++   LG+   D V   A N+
Sbjct: 1   ILEHAARYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNT 60

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---DKVKDLNLP 146
                 +  V  +GA+  T NP  +  +++  +  +  K++    +     + +    LP
Sbjct: 61  HRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAP-RLP 119

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
            V        +     S    + ++ +L+E      + P++   +  AA L Y+SGTTG 
Sbjct: 120 TVKAVVVYDDADMPETS-LPNVYAYEELLEEESPEYEWPELD--ENTAAGLCYTSGTTGN 176

Query: 207 SKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLPMFHV--FGLSVILYDQLQKGNC 263
            KGV+ +H++ +  +L  +    L + E D  VL V+PMFHV  +GL    Y     G  
Sbjct: 177 PKGVVYSHRSLVLHTLASALPDSLGLSESD-TVLPVVPMFHVNAWGLP---YAATMVGAK 232

Query: 264 VVSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
           +V  G++      L  IE+ +VTV   VP I L L         D+SSL+ V  G + L 
Sbjct: 233 LVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSALP 292

Query: 323 KELMEDCQKNIPGATIFQVGYGMTETCAPIS------------LENPLVGVRRSGSAGTL 370
           + L+E  ++   G  +    +GMTET  P+              E   + +R     G  
Sbjct: 293 RSLIEKLEER--GVEVIH-AWGMTETS-PLGTVSRLKPHLVDLPEEEKLELRA--KQGRP 346

Query: 371 VAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPG 405
           V GVE +IV  +    LP +   +GE+ VRGP VT  
Sbjct: 347 VPGVELRIVDDEG-NELPWDGKTVGELVVRGPWVTGS 382

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  139 bits (353), Expect = 1e-36
 Identities = 105/382 (27%), Positives = 176/382 (46%), Gaps = 25/382 (6%)

Query: 30  VHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           V+FL R+       K+AL   D   SL++ + +  V +  ++ R LGI +++ VL+   +
Sbjct: 7   VYFLDRHLNEGRGDKIALYYDD--GSLTYGELQEEVNRWGNALRELGIERENRVLLILLD 64

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLP 146
           +  FP  F G I IGA+    N + T  +    + DS  ++++   ELW+ +K      P
Sbjct: 65  TPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDP 124

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
            +    +  +   G    +    S+  LI  + +  ++   +    D A  LYSSG+TG 
Sbjct: 125 HL----RHVIVVGGAGPGAL---SYAQLI--ATAAEELEAAATSADDMAFWLYSSGSTGR 175

Query: 207 SKGVILTHKNFIAASLMISAHQELVGEL--DHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
            KGV+  H + +  +    A+ + V  +  D VV     +F  +GL   LY  L  G   
Sbjct: 176 PKGVVHLHHDMLVTA---EAYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATT 232

Query: 265 VSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323
           V M +    +     IE+Y+ TV++ VP +  A+       + D+SSL+L  S    L  
Sbjct: 233 VLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEALPA 292

Query: 324 ELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT 383
           E+    ++   G  I   G G TE    I L N   G  + G++G  V G E ++V  D 
Sbjct: 293 EIGYRWKELF-GLEILD-GIGSTEMLH-IFLSN-RPGAVKYGTSGKPVPGYEVKLVDEDG 348

Query: 384 LKPLPPNQLGEIWVRGPNVTPG 405
            + +   ++GE+WVRG +   G
Sbjct: 349 -EEVADGEIGELWVRGDSSAAG 369

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  134 bits (339), Expect = 1e-35
 Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 7/214 (3%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D AA++Y+SG+TG  KGV+L+H+N  A +  I+ + EL    D  +L VLP    +GLS 
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTE--DDRILAVLPFSFDYGLSQ 60

Query: 253 ILYDQLQKGNCVVSMGKFDI-EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
           +L    + G  +V   +F      L+ + K R+T +  VP     L +   + + D  SL
Sbjct: 61  LLT-AFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSL 119

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV 371
           + + +    L  + +   ++  P A +F   YG+TE      L    +  RR  S G  +
Sbjct: 120 RYLTNAGGALPAKTILQLRRAFPDAKLF-SMYGLTEAFRSTYLPPEELD-RRPDSIGKAI 177

Query: 372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
             VE  +V  D      P ++GE+  RG NV  G
Sbjct: 178 PNVELWVVDEDG-NRCAPGEVGELVHRGANVMKG 210

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  136 bits (345), Expect = 4e-35
 Identities = 107/356 (30%), Positives = 170/356 (47%), Gaps = 31/356 (8%)

Query: 74  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133
           LG+ K D V +  PN + +PI   G++  G I    NP+YT  EL  Q+ DS  K ++ V
Sbjct: 69  LGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIV 128

Query: 134 PE----LWDKVKDLNLPAVLLGSKDKVSSSG---LISRSSKIV-------------SFHD 173
                 L   V    +  V+L       S+    L++   K +             SF  
Sbjct: 129 SNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRS 188

Query: 174 LIELSGSVTDI-PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELV 231
            +     +  + P++     D A L Y+ GTTGV+KG +LTH+N +A       A+  L+
Sbjct: 189 ALHKGRRMQYVKPELV--PEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLL 246

Query: 232 GELDHVVLCVLPMFHVFGLSV--ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
                +V+  LP++H+F L+V  +L+ +L   N +++  + DI   ++ ++KY  T    
Sbjct: 247 HPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPR-DIPGFVKELKKYPFTAITG 305

Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
           V  +  AL  N   ++ D SSLKL   G   + + + E   K + G  + + GYG+TE C
Sbjct: 306 VNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVK-LTGQYLLE-GYGLTE-C 362

Query: 350 APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           +P+   NP      SGS G  V   E ++V  D    +PP + GE+WV+GP V  G
Sbjct: 363 SPLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLG 417

Length = 560

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  134 bits (340), Expect = 4e-35
 Identities = 90/349 (25%), Positives = 139/349 (39%), Gaps = 51/349 (14%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
            L++ +      +++ +   LG+   DVV    PN   F + +L    IGA+ +   P+Y
Sbjct: 1   RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIY 60

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
              EL   ++ +  +++  VP+ +                                    
Sbjct: 61  RERELGFILRQARARVLF-VPDEFRGF--------------------------------- 86

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                     +PD      D A LLY+SGTTG  KGV+ TH   +A          L   
Sbjct: 87  ------DYAAMPD------DVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP- 133

Query: 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
            D VVL   P+ H+ G    L   L  G  VV   ++D   AL  I ++ VT      P 
Sbjct: 134 -DDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPF 192

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPIS 353
           +  L   +     D+ SL++   G AP+ +EL     +   GA + +  YGMTE      
Sbjct: 193 LADLLAAADAAGPDLPSLRVFLCGGAPVPRELARRAAE-ALGAKVVRA-YGMTEVPLVTV 250

Query: 354 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 402
                   +R+ + G  V GVE +IV  D    +PP + GE+ VRGP +
Sbjct: 251 GTPDDPDDKRAATDGRPVPGVEVRIVD-DDGNDVPPGEEGELQVRGPQL 298

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  135 bits (342), Expect = 9e-35
 Identities = 115/411 (27%), Positives = 185/411 (45%), Gaps = 63/411 (15%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L R +A Y  + AL+  D     ++ +F   V  ++     LGI K D V I+APN   
Sbjct: 21  LLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPE 80

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------------VPE 135
           + +       IGAI  T NP Y +SEL   +  S  K +I                  PE
Sbjct: 81  WVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPE 140

Query: 136 LWD----KVKDLNLPA----VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD--IP 185
           L      +++   LP     + LG +          +   +++F +L+ L  +V D  + 
Sbjct: 141 LATCEPGQLQSARLPELRRVIFLGDE----------KHPGMLNFDELLALGRAVDDAELA 190

Query: 186 DV--SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP 243
               ++   D   + Y+SGTTG  KG  LTH+N +     I    +L  E D + + V P
Sbjct: 191 ARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKL-TEEDRLCIPV-P 248

Query: 244 MFHVFG--LSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
           ++H FG  L  +    +  G  +V  G  FD    L A+E+ R T  + VP + +A   +
Sbjct: 249 LYHCFGMVLGNL--ACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDH 306

Query: 301 SLVRKFDISSLK---LVGSGAAPLGKELMEDCQK--NIPGATIFQVGYGMTETCAPISL- 354
               +FD+SSL+   + GS   P   E+M+      ++   TI    YGMTET +P+S  
Sbjct: 307 PDFARFDLSSLRTGIMAGS---PCPIEVMKRVIDKMHMSEVTI---AYGMTET-SPVSTQ 359

Query: 355 ---ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 402
              ++PL   +R  + G  +  +E +IV  +T + +P  + GE+  RG +V
Sbjct: 360 TRTDDPL--EKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSV 408

Length = 559

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  133 bits (336), Expect = 1e-34
 Identities = 72/226 (31%), Positives = 106/226 (46%), Gaps = 29/226 (12%)

Query: 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV-LCVLPM 244
           D+       A ++++SG+TG  K V+ T  N +A++       E +G       L  LP+
Sbjct: 71  DLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASAR---GSAENLGLTPDDNWLLSLPL 127

Query: 245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP----IILALAKN 300
           FHV GL+ I+   L  G  +V   KFD E    A+E + VT   +VP     ++ +L   
Sbjct: 128 FHVSGLA-IVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGAR 186

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDC-QKNIPGATIFQVGYGMTETCAPISLENPLV 359
            L      SSL+ V  G AP+   L+E   Q+ IP        YGMTET + ++   P  
Sbjct: 187 WL------SSLRAVLLGGAPIPPSLLEQARQRGIPLYP----TYGMTETASQVATLKPDD 236

Query: 360 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            + + GS G  + G E +IV           Q GEI VRGP++  G
Sbjct: 237 FLAKLGSVGKPLPGRELRIV---------NPQDGEILVRGPSLFLG 273

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  132 bits (334), Expect = 1e-33
 Identities = 111/429 (25%), Positives = 186/429 (43%), Gaps = 59/429 (13%)

Query: 17  PPLV---LPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH 73
           PP V   + +    S+   L  +   Y+ + A I     +++++ +   +   ++   + 
Sbjct: 10  PPGVPAEIDASQYPSLADLLEESFRQYADRPAFICMG--KAITYGELDELSRALAAWLQS 67

Query: 74  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI-- 131
            G+ K   V I  PN + +P+    V+  G +    NP+YT  EL  Q+KDS  + ++  
Sbjct: 68  RGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVL 127

Query: 132 -----TVPELWDKVKDLNLPAVLLGSK-DKVSSSGLI-----SRSSKIV---------SF 171
                TV ++  K     +  V++ S  D +   G I      R  K+V          F
Sbjct: 128 ENFATTVQQVLAKT---AVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSLPGHVRF 184

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +D +      T  P V +   D A L Y+ GTTGVSKG  L H+N +A  L + A  +  
Sbjct: 185 NDALAEGARQTFKP-VKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPA 243

Query: 232 ----GELDHVV-LCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----------FDIEMAL 276
                  D +  +C LP++H+F L+V           ++ M             DI   +
Sbjct: 244 FEKKPRPDQLNFVCALPLYHIFALTV---------CGLLGMRTGGRNILIPNPRDIPGFI 294

Query: 277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336
           + ++KY+V ++  V  +  AL  N    K D S L +   G   + + + E   + + G 
Sbjct: 295 KELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQRPVAERWLE-MTGC 353

Query: 337 TIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 396
            I + GYG++ET +P++  NP+     SG+ G  +   E  I   D    LP  + GEI 
Sbjct: 354 PITE-GYGLSET-SPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEIC 410

Query: 397 VRGPNVTPG 405
           +RGP V  G
Sbjct: 411 IRGPQVMAG 419

Length = 557

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  131 bits (331), Expect = 1e-33
 Identities = 111/378 (29%), Positives = 178/378 (47%), Gaps = 40/378 (10%)

Query: 49  ADSDE-SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           ADS   SL++ +  +  + +S   + L   + + + I  P+S+   +  L ++  G +  
Sbjct: 1   ADSTGGSLTYRKLLTASLALSRLIKKL-TKEGENIGIMLPSSVAGALANLALLLAGKVPV 59

Query: 108 TANPVYTVSE--LSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGL---I 162
             N  +T  E  L    K +  K VIT     +K+K L    VLL     V    L   I
Sbjct: 60  MLN--FTAGEEGLRSACKQAGIKTVITSRAFLEKLK-LEGLVVLLEGVRIVYLEDLRAKI 116

Query: 163 SRSSKIVSFHDLIELSGSVTD----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI 218
           S++ K+ +F     L+  +      +     K  D A +L++SG+ G+ KGV+L+H+N +
Sbjct: 117 SKADKLKAF-----LAAKLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLL 171

Query: 219 AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF------DI 272
           A    I+A  +L    + V+L  LP+FH FGL+V L   L  G     +         D 
Sbjct: 172 ANIDQIAAVIDLNT--EDVLLGALPLFHAFGLTVTLLLPLLTG-----LRVVYYPNPLDA 224

Query: 273 EMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKN 332
           +     I  Y+ T+    P  +   A+N+     D SSL+LV +GA  L +   E  ++ 
Sbjct: 225 KKIAELIRDYKATILCGTPTFLRGYARNA--HPEDFSSLRLVVAGAEKLPEATRELFEEK 282

Query: 333 IPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 392
             G  I + GYG TE    IS+  P+    + G+ G  + G+E +IVS +T + LP  + 
Sbjct: 283 F-GIRILE-GYGATECSPVISVNTPMG--NKPGTVGRPLPGIEVRIVSPETHEELPIGEG 338

Query: 393 GEIWVRGPNVTPGIVYIN 410
           G + VRGPNV  G  Y+N
Sbjct: 339 GLLLVRGPNVMSG--YLN 354

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  129 bits (327), Expect = 7e-33
 Identities = 103/360 (28%), Positives = 164/360 (45%), Gaps = 20/360 (5%)

Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+       ++    +   ++++    LG+   D V +    S      +L  +  GA+ 
Sbjct: 21  IETPDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVF 80

Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSS 166
              N  YT++EL   + D+ P LV+  P  +  +  +   A   G+   V +       S
Sbjct: 81  LPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKI---AAAAGAP-HVETLDADGTGS 136

Query: 167 KIVSFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 225
                  L+E  + +  D   V     D AA+LY+SGTTG SKG +L+H N ++ +L + 
Sbjct: 137 -------LLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTL- 188

Query: 226 AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 285
                    D V++  LP+FH  GL V     L  G  ++ + KFD +  L  +   R T
Sbjct: 189 -VDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RAT 245

Query: 286 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGM 345
           V   VP     L +   + +   + ++L  SG+APL  E   + Q+   G  I +  YGM
Sbjct: 246 VMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILE-RYGM 303

Query: 346 TETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           TET    S  NP  G RR+G+ G  + GV  ++   +T   LPP ++G I V+GPNV  G
Sbjct: 304 TETNMNTS--NPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKG 361

Length = 504

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  129 bits (327), Expect = 9e-33
 Identities = 105/411 (25%), Positives = 161/411 (39%), Gaps = 85/411 (20%)

Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D D +E+L++++       ++   + LG    D VL+ AP  + F   F G +  GAIA 
Sbjct: 17  DDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAV 75

Query: 108 TANP----VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLIS 163
            A P       ++ L+  + D+  + V+T   +   ++        L             
Sbjct: 76  PAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLL----------- 124

Query: 164 RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM 223
               ++   D +    +  D         D A L Y+SG+TG  KGV++TH N +A    
Sbjct: 125 ----LLIAADDLAALAA-ADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRA 179

Query: 224 ISAHQELVGELDHVVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMA---- 275
           I+    L    D  V   LP++H    + GL   LY     G  VV M      +A    
Sbjct: 180 IARAFGL-DPDDVGVSW-LPLYHDMGLIGGLLQPLYA----GFPVVLMSP----LAFLRR 229

Query: 276 ----LRAIEKYRVTVWWVVPPIILALAKNSLVRK--------FDISSLKLVGSGAAPLGK 323
               L AI +YR TV    P     L     VR+         D+SS ++  +GA P+  
Sbjct: 230 PLRWLEAISRYRATVSG-APNFAYDLC----VRRVRDEQLAGLDLSSWRVAFNGAEPVRA 284

Query: 324 ELMED-CQKNIP-G--ATIFQVGYGMTETCAPIS---LENPLV----------------- 359
           + +E   ++  P G     F   YG+ E    +S        V                 
Sbjct: 285 DTLERFAERFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVA 344

Query: 360 -----GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
                  R   S G  + G E +IV  +T +PLP  ++GEIWVRGP+V  G
Sbjct: 345 AADGAAARELVSCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAG 395

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  127 bits (320), Expect = 7e-32
 Identities = 103/385 (26%), Positives = 168/385 (43%), Gaps = 32/385 (8%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           AL+        ++ Q    V +++     LG+   D V I+APN   + +       IGA
Sbjct: 36  ALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGA 95

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPEL--WDKVKDLN--LPAVLLGSKDKVSSSG 160
           I    NP Y  SEL   +  S  + VI        D    L   LP +  G    ++   
Sbjct: 96  ILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACER 155

Query: 161 L----------ISRSSKIVSFHDLIELSGSVTDIPDVSVKQT----DAAALLYSSGTTGV 206
           L           +     +++H+L     +V+       + +    D   + Y+SGTTG 
Sbjct: 156 LPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGF 215

Query: 207 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCV-LPMFHVFGLSVILYDQLQKGNCVV 265
            KG  L+H N +     ++   E +G  +H  LCV +P++H FG+ +     +  G C+V
Sbjct: 216 PKGATLSHHNILNNGYFVA---ESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLV 272

Query: 266 SMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
              + FD    L+A+E+ R T  + VP + +A   +     FD+SSL+      AP   E
Sbjct: 273 YPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIE 332

Query: 325 LMEDCQKNIPGATIFQVGYGMTETCAPISL----ENPLVGVRRSGSAGTLVAGVEAQIVS 380
           +M      +  A + Q+ YGMTET +P+SL     + L   RR  + G     +E ++V 
Sbjct: 333 VMRRVMDEMHMAEV-QIAYGMTET-SPVSLQTTAADDL--ERRVETVGRTQPHLEVKVVD 388

Query: 381 VDTLKPLPPNQLGEIWVRGPNVTPG 405
            D    +P  ++GE+  RG +V  G
Sbjct: 389 PDG-ATVPRGEIGELCTRGYSVMKG 412

Length = 558

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  126 bits (319), Expect = 1e-31
 Identities = 96/359 (26%), Positives = 163/359 (45%), Gaps = 36/359 (10%)

Query: 73  HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK---- 128
           H  +   D + +  PN + +P+   G +  G I    NP+YT  E+  Q  DS  K    
Sbjct: 69  HTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVC 128

Query: 129 --------------------LVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 168
                               +V  V ++   +K L + AV+   K  V +  L     + 
Sbjct: 129 LANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL----PQA 184

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
           V F+D +   G+   + + + +  D A L Y+ GTTGV+KG +LTH+N +A  L   A  
Sbjct: 185 VKFNDALAK-GAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM 243

Query: 229 E-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN-CVVSMGKFDIEMALRAIEKYRVTV 286
              + E   +++  LP++H++  +      +  GN  ++     D+   ++ + K++ + 
Sbjct: 244 GSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSG 303

Query: 287 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMT 346
           +  +  + +AL  N   RK D S+LKL  SG   L     E   K + G  I + GYGMT
Sbjct: 304 FVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAE-RWKEVTGCAICE-GYGMT 361

Query: 347 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           ET +P+   NP   + + G+ G  V     +++  D    LP  ++GE+ V+GP V  G
Sbjct: 362 ET-SPVVSVNPSQAI-QVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKG 417

Length = 562

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  125 bits (315), Expect = 4e-31
 Identities = 96/368 (26%), Positives = 164/368 (44%), Gaps = 50/368 (13%)

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131
           R  G+   D V +F PN   F I F G++ +GA+    +P++   ELS ++ D+  ++++
Sbjct: 76  RQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLL 135

Query: 132 TVPELWDKVKD----LNLPAVLLGSKDKVSSS-------GLISRSSKIVS-FHDLIE-LS 178
            + +L   V+      +L  V++ S   V  +         +       +   DL+  L 
Sbjct: 136 ALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALR 195

Query: 179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI---AASLMISAHQELVGELD 235
                +P         AAL Y+ GTTG+ KG   T ++ +   AA+  ++    +VG  D
Sbjct: 196 ACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGED 251

Query: 236 HVVLCVLPMFHV----FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
            V L  LP F +    FGL   L+     G  +V + ++D    + A+E+YRVT   ++ 
Sbjct: 252 SVFLSFLPEFWIAGENFGLLFPLFS----GATLVLLARWDAVAFMAAVERYRVTRTVMLV 307

Query: 292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ---KNIPGATIFQVGYGMTET 348
              + L  +    ++D+SSL+ V        K+L  D +   + + G+ + +  +GMTET
Sbjct: 308 DNAVELMDHPRFAEYDLSSLRQVR--VVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTET 365

Query: 349 --CAPIS---------LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV 397
             C   +         L +  V V      G  V G E +I   +T + LP    GEI V
Sbjct: 366 HTCDTFTAGFQDDDFDLLSQPVFV------GLPVPGTEFKICDFETGELLPLGAEGEIVV 419

Query: 398 RGPNVTPG 405
           R P++  G
Sbjct: 420 RTPSLLKG 427

Length = 567

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  121 bits (306), Expect = 7e-31
 Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 16/225 (7%)

Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
             D AA  ++ GTTG  K    +H+N +A + M +    L      V+L  LP+FHV G 
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLG--PGDVLLNGLPLFHVGGA 58

Query: 251 SVILYDQLQKGNCVV---SMGKFDIEMA---LRAIEKYRVTVWWVVPPIILALAKNSLVR 304
            V     L +G  VV     G  +  +     + +E+YRVT+   VP ++ AL +  L  
Sbjct: 59  IVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGD 118

Query: 305 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRS 364
             DISSL+   +GAAPL  E+    +  + G  + + GYGMTE     ++ NP  G RR 
Sbjct: 119 A-DISSLRYALTGAAPLPVEVARRFEA-VTGVPVVE-GYGMTEGTGVSAI-NPRGGPRRP 174

Query: 365 GSAGTLVAGVEAQIVSVD----TLKPLPPNQLGEIWVRGPNVTPG 405
           GS G  +     ++  +D      +   P ++G + +RGPNV PG
Sbjct: 175 GSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPG 219

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score =  122 bits (307), Expect = 3e-30
 Identities = 90/375 (24%), Positives = 156/375 (41%), Gaps = 9/375 (2%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           H L   +A      AL+  D   +L+++     V+ ++   R LG+ + + V I+    +
Sbjct: 4   HLLEDAAARLPDATALVHHD--RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRL 61

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLL 150
                  G    G +    NP+    +++  + D N +L++T  E  D +         L
Sbjct: 62  ETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDL 121

Query: 151 GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
            +   V      S            +L       P   V  +D AA+LY+SG+TG  KGV
Sbjct: 122 RTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGV 181

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF 270
           +L+H+N +A +  ++ + E     D  +L VLP+   +G +  L      G  VV     
Sbjct: 182 VLSHRNLVAGAQSVATYLEN--RPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYL 238

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
                L+A+EK+ +T    VPP+   LA+     +    SL+ + +    + +  +   +
Sbjct: 239 LPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLR 297

Query: 331 KNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN 390
             +P A +F + YG+TE      L    V  RR  S G  +   E  ++  D  +   P 
Sbjct: 298 SFLPNARLFLM-YGLTEAFRSTYLPPEEVD-RRPDSIGKAIPNAEVLVLREDGSECA-PG 354

Query: 391 QLGEIWVRGPNVTPG 405
           + GE+  RG  V  G
Sbjct: 355 EEGELVHRGALVAMG 369

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  120 bits (304), Expect = 7e-30
 Identities = 108/382 (28%), Positives = 171/382 (44%), Gaps = 43/382 (11%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIG 103
           A+I A S E +++ + ++   +++H  R LG+ + DVV I   N+   F + +    + G
Sbjct: 2   AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRS-G 60

Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLIS 163
              +  N   T +E++  V DS  K++I    L D   +L    +  G    +  +G + 
Sbjct: 61  LYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAEL-AAELPAGVPLLLVVAGPVP 119

Query: 164 RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI--LTHKNFIAAS 221
                 S+ + +  +   T I D    +T  A +LYSSGTTG  KG+   L   +   A 
Sbjct: 120 GFR---SYEEALA-AQPDTPIAD----ETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAP 171

Query: 222 LMISA--HQELVGELDHVVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMA 275
            M+ A     + G  D V L   P++H     FG+S      L  G  VV M KFD E A
Sbjct: 172 GMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSA-----LALGGTVVVMEKFDAEEA 226

Query: 276 LRAIEKYRVTVWWVVPPI---ILALAKNSLVR-KFDISSLKLVGSGAAPLG---KELMED 328
           L  IE+YRVT   +VP +   +L L +   VR ++D+SSL++    AAP     K  M D
Sbjct: 227 LALIERYRVTHSQLVPTMFVRMLKLPEE--VRARYDVSSLRVAIHAAAPCPVEVKRAMID 284

Query: 329 CQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 388
                 G  I +  Y  +E    +++      +   GS G  V G E +I+  +    LP
Sbjct: 285 WW----GPIIHEY-YASSEGGG-VTVITSEDWLAHPGSVGKAVLG-EVRILD-EDGNELP 336

Query: 389 PNQLGEIWVRGPNVTPGIVYIN 410
           P ++G ++           Y N
Sbjct: 337 PGEIGTVYFEMD--GYPFEYHN 356

Length = 502

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  119 bits (300), Expect = 8e-30
 Identities = 84/351 (23%), Positives = 142/351 (40%), Gaps = 41/351 (11%)

Query: 72  RHL----GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNP 127
           RHL    G+   D V +    S    +  L V+  GA     +P Y    L+  ++D+  
Sbjct: 14  RHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGA 73

Query: 128 KLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV 187
           +L++T   L  ++  L LP +LL   +  +                           PD 
Sbjct: 74  RLLLTDSALASRLAGLVLPVILLDPLELAALD------------------DAPAPPPPDA 115

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV 247
                D A ++Y+SG+TG  KGV++TH++    +L+    +    + D  VL        
Sbjct: 116 PSGPDDLAYVIYTSGSTGRPKGVVVTHRS--LVNLLAWLARRYGLDPDDRVLQFAS--LS 171

Query: 248 FGLSVI-LYDQLQKGNCVV----SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
           F  SV  ++  L  G  +V       + D  +    I ++ VTV  + P ++  LA    
Sbjct: 172 FDASVEEIFGALLAGATLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLA---A 228

Query: 303 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET---CAPISLENPLV 359
                ++SL+LV  G   L   L++  +   PGA +    YG TET        ++    
Sbjct: 229 ALPPALASLRLVILGGEALTPALVDRWRARGPGARLIN-LYGPTETTVWSTATLVDPDDA 287

Query: 360 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
                   G  +A     ++  D L+P+P   +GE+++ GP V  G  Y+N
Sbjct: 288 PRESPVPIGRPLANTRLYVLD-DDLRPVPVGVVGELYIGGPGVARG--YLN 335

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  120 bits (303), Expect = 9e-30
 Identities = 99/362 (27%), Positives = 162/362 (44%), Gaps = 36/362 (9%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D+ +S+++F   +++ +      GI + DVV +   NS  F         +GA+    N 
Sbjct: 25  DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINY 84

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
                E++  + D+  KL++ V E +D +  L  P +++ +  +  S  L          
Sbjct: 85  RLAADEVAYILGDAGAKLLL-VDEEFDAIVALETPKIVIDAAAQADSRRLAQ-------- 135

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI------AASLMIS 225
                  G +   P  +V  TD   L+Y+SGTT   KGV+ ++ N          +L ++
Sbjct: 136 -------GGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLT 188

Query: 226 AHQEL--VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYR 283
           A + L  VG L HV    LP     G++V     L  G  +    +FD E  L AIE++R
Sbjct: 189 ASERLLVVGPLYHVGAFDLP-----GIAV-----LWVGGTLRIHREFDPEAVLAAIERHR 238

Query: 284 VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY 343
           +T  W+ P ++  +       +FD+ SL     G     +  + D  +    A  +   Y
Sbjct: 239 LTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRAR-YIDAY 297

Query: 344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 403
           G+TETC+  +L      + + GS G  +A VE +I      + LPPN  GEI +RGP VT
Sbjct: 298 GLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVT 356

Query: 404 PG 405
            G
Sbjct: 357 KG 358

Length = 497

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  120 bits (304), Expect = 1e-29
 Identities = 96/406 (23%), Positives = 166/406 (40%), Gaps = 56/406 (13%)

Query: 30  VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           + FL R +  Y  + A++  D     ++ +      +++ +   LGI K DVV + APN+
Sbjct: 7   LSFLERAAKVYPDRTAVVYGDR--RYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNT 64

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL 149
                   GV   GA+    N      +++  +  S  K++    E     ++      L
Sbjct: 65  PAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEA---LAL 121

Query: 150 LGSKDKVSSSGLIS----RSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
           L +K+ + +  ++       S+   + DL+   G    +P     + D  +L Y+SGTTG
Sbjct: 122 LSTKEIIDTEIIVISPAAEDSEEGDYEDLLA-GGDPDPLPIPPDDEWDPISLNYTSGTTG 180

Query: 206 VSKGVILTHKN-FIAASLMISAHQELVGELDH--VVLCVLPMFH------VFGLSVILYD 256
             KGV+ TH+  ++ A   +         +    V L  LPMFH       + ++ +   
Sbjct: 181 NPKGVVYTHRGAYLNALGNVIEW-----GMPDRPVYLWTLPMFHCNGWCFPWAITAV--- 232

Query: 257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS-LKLVG 315
               G   V + K D       IEK++VT     P ++  LA      K  +   ++++ 
Sbjct: 233 ----GGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANAPEADKLPLPRPVRVMT 288

Query: 316 SGAAPLGK--ELMEDCQKNIPGATIFQVGYGMTETCAPIS-------LENPLVGVR---- 362
           +GA P     + ME+      G  +  V YG+TET  PI+        +      R    
Sbjct: 289 AGAPPPPAVIKKMEEL-----GFEVTHV-YGLTETYGPITVCEWKPEWDALPAEERARLK 342

Query: 363 -RSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPG 405
            R G     V   E  +V  +T+K +P +   +GEI +RG  V  G
Sbjct: 343 ARQGVR--YVGLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKG 386

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  118 bits (298), Expect = 2e-29
 Identities = 85/359 (23%), Positives = 143/359 (39%), Gaps = 63/359 (17%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           ++         ++ + +  GI     V +   NSI   +     + +GA  +  N   T 
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
           +E + Q++D + +L++T                          S L  +  +  S   + 
Sbjct: 61  NERTNQLEDLDVQLLLT-------------------------DSLLEEKDFQADSLDRI- 94

Query: 176 ELSGSVTDIPDVSVKQT----DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
                     + S+  +      A L+++SGTTG  K V  T +N   AS + S      
Sbjct: 95  ----EAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRN-HYASAVGSKENLGF 149

Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
            E D+ +L  LP++H+ GLS++    ++     +      +   L  I   RVT   +VP
Sbjct: 150 TEDDNWLL-SLPLYHISGLSILFRWLIEGATLRIVDKFNQL---LEMIANERVTHISLVP 205

Query: 292 PIILALAK----NSLVRKFDISSLKLVGSGAAPLGKELMEDC-QKNIPGATIFQVGYGMT 346
             +  L      N  +RK       L+G  A P    L+E+  Q  +P   I+   YGMT
Sbjct: 206 TQLNRLLDEGGHNENLRKI------LLGGSAIPA--PLIEEAQQYGLP---IYL-SYGMT 253

Query: 347 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           ETC+ ++   P +   R    G  +AG E +I  VD  +       GEI V+G N+  G
Sbjct: 254 ETCSQVTTATPEMLHAR-PDVGRPLAGREIKI-KVDNKE-----GHGEIMVKGANLMKG 305

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  119 bits (300), Expect = 3e-29
 Identities = 108/399 (27%), Positives = 183/399 (45%), Gaps = 42/399 (10%)

Query: 34  FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP 93
           F +  +Y S    I     + L   QF + ++        L + K D V +  PN + +P
Sbjct: 38  FADRPAYHSFGKTITYREADQLV-EQFAAYLLGE------LQLKKGDRVALMMPNCLQYP 90

Query: 94  ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK----DLNLPAVL 149
           I   GV+  G      NP+YT  EL  Q+ DS   +++ +      V+    D  +  V+
Sbjct: 91  IATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVI 150

Query: 150 ---LGSKDKVSSSGLIS-------------RSSKIVSFHDLIELSGSVTDIPDVSVKQTD 193
              LG       + L++             R +  + F + + L G    +P + ++  D
Sbjct: 151 TTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALAL-GRKHSMPTLQIEPDD 209

Query: 194 AAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-----ELDHVVLCVLPMFHVF 248
            A L Y+ GTTGV+KG +LTH+N +A   M  AHQ L G     E   VV+  LP++H+F
Sbjct: 210 IAFLQYTGGTTGVAKGAMLTHRNLVAN--MQQAHQWLAGTGKLEEGCEVVITALPLYHIF 267

Query: 249 GLSV--ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF 306
            L+   +++ ++   N ++S  + D+   ++ ++K R T +  V  +   L       + 
Sbjct: 268 ALTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQI 326

Query: 307 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGS 366
           D SSLK+   G   + + + E   K + G T+ +  YG+TET +P +  NPL     +GS
Sbjct: 327 DFSSLKMTLGGGMAVQRSVAER-WKQVTGLTLVE-AYGLTET-SPAACINPLTLKEYNGS 383

Query: 367 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            G  +   +A I   D    L   ++GE+ ++GP V  G
Sbjct: 384 IGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKG 421

Length = 560

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  120 bits (303), Expect = 3e-29
 Identities = 108/414 (26%), Positives = 176/414 (42%), Gaps = 57/414 (13%)

Query: 28   SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +       +    S+LA+ D+   E LS+ +  +  + ++   +   +  ++ V I  P
Sbjct: 616  PLAEAWIDTAKRNWSRLAVADSTGGE-LSYGKALTGALALARLLKRE-LKDEENVGILLP 673

Query: 88   NSIHFPICFLGVIAIGAIASTANPVYTVSE--LSKQVKDSNPKLVIT----VPELWDKVK 141
             S+   +  L ++  G +    N  YT SE  L   ++ +  K VIT    + +L +K  
Sbjct: 674  PSVAGALANLALLLAGKVPVNLN--YTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGF 731

Query: 142  DLNLP----AVLL-------GSKDKVSSSGLI----SRSSKIVSFHDLIELSGSVTDIPD 186
            DL LP     + L          DK+++        +R  K +                 
Sbjct: 732  DLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARLLKRLYGPT------------- 778

Query: 187  VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
               K  D A +++SSG+ G  KGV+L+H N ++    IS         D V+L  LP FH
Sbjct: 779  --FKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQIS--DVFNLRNDDVILSSLPFFH 834

Query: 247  VFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 305
             FGL+V L+  L +G  VV      D     + + K+R T+    P  +    +N  +  
Sbjct: 835  SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHP 894

Query: 306  FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENP-------- 357
               +SL+LV +GA  L  E+ +  ++   G  I + GYG TET    S+  P        
Sbjct: 895  LMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILE-GYGATETSPVASVNLPDVLAADFK 952

Query: 358  -LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
               G +  GS G  + GV  +IV  +T + LPP + G I + GP V  G  Y+ 
Sbjct: 953  RQTGSKE-GSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKG--YLG 1003

Length = 1146

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  118 bits (298), Expect = 6e-29
 Identities = 100/364 (27%), Positives = 166/364 (45%), Gaps = 36/364 (9%)

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131
           +H  +   D + +  PN + +PI   G +  G I    NP+YT  E+  Q KDS  + ++
Sbjct: 68  QHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALV 127

Query: 132 TVPELWDKVKDLNLPAV----LLGSK-----------------DKVSSSGLISRSSKIVS 170
            +      V+++ LP      L+ +K                 DKV          + V 
Sbjct: 128 YLNMFGKLVQEV-LPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHLPQAVP 186

Query: 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH--- 227
           F   +   G    +  V V   D A L Y+ GTTG++KG +LTH N +A  L + A    
Sbjct: 187 FKQALRQ-GRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQ 245

Query: 228 -----QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN-CVVSMGKFDIEMALRAIEK 281
                Q L+ E   V++  LP++H++  +      +  GN  V+     DI   ++ + K
Sbjct: 246 LGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGK 305

Query: 282 YRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV 341
           +R +    +  + +AL  +   +  D S+LKL  SG   L K   E  ++ + G TI + 
Sbjct: 306 WRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQ-LTGCTIVE- 363

Query: 342 GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN 401
           GYG+TET +P++  NP   + R G+ G  V G   +++  D  + LP  + GE+ ++GP 
Sbjct: 364 GYGLTET-SPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNE-LPLGERGELCIKGPQ 421

Query: 402 VTPG 405
           V  G
Sbjct: 422 VMKG 425

Length = 562

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score =  117 bits (296), Expect = 1e-28
 Identities = 103/387 (26%), Positives = 170/387 (43%), Gaps = 43/387 (11%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           A++    +   +  +F   V+ ++     LG+   DVV I A NS  +    L V   G 
Sbjct: 23  AVVTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGG 82

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVIT---VPELWDKVKDLNLPA----VLLGSKDKVS 157
           I +  N  ++  E    +    P +++T       ++++++  LP+    V L S     
Sbjct: 83  IVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV 142

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
              L S  +      ++++     T   D +    DA  + ++SGTTG  KGV ++H   
Sbjct: 143 FIFLNSFLTT-----EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSAL 197

Query: 218 IAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL 276
           I  SL   A   +VG   D V L   P+ H+ GLS  L   L  G C V + KFD + AL
Sbjct: 198 IVQSL---AKIAIVGYGEDDVYLHTAPLCHIGGLSSAL-AMLMVGACHVLLPKFDAKAAL 253

Query: 277 RAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 333
           +AI+++ VT    VP +   +++L + S+  K   S  K++ +G   L   L+ D +K  
Sbjct: 254 QAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKIL-NGGGSLSSRLLPDAKKLF 312

Query: 334 PGATIFQVGYGMTETCAPIS--------LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK 385
           P A +F   YGMTE C+ ++        LE+P   ++      +       Q   V   K
Sbjct: 313 PNAKLFS-AYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVH---QPQGVCVGK 368

Query: 386 PLP----------PNQLGEIWVRGPNV 402
           P P           +++G I  RGP+V
Sbjct: 369 PAPHVELKIGLDESSRVGRILTRGPHV 395

Length = 563

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  117 bits (294), Expect = 2e-28
 Identities = 97/349 (27%), Positives = 150/349 (42%), Gaps = 45/349 (12%)

Query: 75  GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134
           G+   D VLI   N   F    L    +GAIA   N   T  E++  V D    +V+T  
Sbjct: 63  GVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEA 122

Query: 135 ELW-------DKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG---SVTDI 184
            L        D V  L+   V  GS D             ++ + DL+  +G   +  DI
Sbjct: 123 ALAPVATAVRDIVPLLSTVVVAGGSSD-----------DSVLGYEDLLAEAGPAHAPVDI 171

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244
           P+ S      A ++Y+SGTTG  KG +LTH N    ++            D V    +P+
Sbjct: 172 PNDS-----PALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSD-VGFVGVPL 225

Query: 245 FHVFGL-SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV 303
           FH+ G+ S++    L     +  +G FD    L  +E  +VT  ++VP    A+      
Sbjct: 226 FHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQA 285

Query: 304 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTE----TCAPISLENPLV 359
           R  D+ +L+++  GAAP    L+       P A I    +G TE    TC        L+
Sbjct: 286 RPRDL-ALRVLSWGAAPASDTLLRQMAATFPEAQILAA-FGQTEMSPVTCM-------LL 336

Query: 360 G---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           G   +R+ GS G ++  V A++V  + +  +P  ++GEI  R P +  G
Sbjct: 337 GEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSG 384

Length = 542

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  116 bits (293), Expect = 2e-28
 Identities = 97/386 (25%), Positives = 164/386 (42%), Gaps = 34/386 (8%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           H L      Y  + AL+  D+   L++ Q    + +   +F  LG+   D V + + N  
Sbjct: 16  HLLVSALKRYPDRPALVLGDT--RLTYGQLADRISRYIQAFEALGLGTGDAVALLSLN-- 71

Query: 91  HFPICFLGVIAIGA-----IASTA-NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
                   ++AIGA     +  TA +P+ ++ + +  ++D+    +I      D    + 
Sbjct: 72  ----RPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIV-----DPAPFVE 122

Query: 145 LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ-TDAAALLYSSGT 203
               LL     +     +      V   DL+  +      P V+     D A L Y+ GT
Sbjct: 123 RALALLARVPSLKHVLTLGPVPDGV---DLLAAAAKFGPAPLVAAALPPDIAGLAYTGGT 179

Query: 204 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           TG  KGV+ TH++    + +  A  E   +     L   P+ H  G        L +G  
Sbjct: 180 TGKPKGVMGTHRSIATMAQIQLAEWEWPADPR--FLMCTPLSHAGGAFF--LPTLLRGGT 235

Query: 264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323
           V+ + KFD    LRAIE+ R+T  ++VP +I AL  +  +R  D+SSL+ V  GA+P+  
Sbjct: 236 VIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSP 295

Query: 324 ELMEDCQKNIPGATIFQVGYGMTETCAPISL----ENPLVGVRRSGSAGTLVAGVEAQIV 379
             + +  +   G    Q  YG TE    I+     ++     +R  S G    G+   ++
Sbjct: 296 VRLAEAIERF-GPIFAQY-YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALL 353

Query: 380 SVDTLKPLPPNQLGEIWVRGPNVTPG 405
             +  + +   ++GEI VRGP V  G
Sbjct: 354 D-EDGREVAQGEVGEICVRGPLVMDG 378

Length = 524

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score =  114 bits (288), Expect = 1e-27
 Identities = 110/373 (29%), Positives = 167/373 (44%), Gaps = 41/373 (10%)

Query: 43  KLAL--IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI 100
           K+AL  +DA   E  ++ + K +  K ++  + LG+ K D V IF P         LG +
Sbjct: 60  KVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGAL 119

Query: 101 AIGAIAST------ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA---VLLG 151
             GAI            V        +++DS  K++IT P L ++    +LP+   VLL 
Sbjct: 120 KNGAIVGPLFEAFMEEAVRD------RLEDSEAKVLITTPALLERKPADDLPSLKHVLL- 172

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
             + V            + F+ L+E +    DI      + D A L Y+SG+TG  KGV+
Sbjct: 173 VGEDVEEGP------GTLDFNALMEQASDEFDIEW--TDREDGAILHYTSGSTGKPKGVL 224

Query: 212 LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKGNCVVSMGKF 270
             H   +      +    L    D V  C      V G S  I    L     V+  G+F
Sbjct: 225 HVHNAMLQH--YQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRF 282

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
             E   R +E Y+VTVW+  P  I  L  A + LV+K+D+SSL+ + S   PL  E++  
Sbjct: 283 SPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRW 342

Query: 329 CQK--NIPGATIFQVGYGMTETCAPISLEN-PLVGVRRSGSAGTLVAGVEAQIVSVDTLK 385
             K   +P        + MTET   I + N P + + + GS G  + G+EA IV  D   
Sbjct: 343 GMKVFGLP----IHDNWWMTETGG-IMIANYPAMDI-KPGSMGKPLPGIEAAIVD-DQGN 395

Query: 386 PLPPNQLGEIWVR 398
            LPPN++G + ++
Sbjct: 396 ELPPNRMGNLAIK 408

Length = 570

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  114 bits (287), Expect = 2e-27
 Identities = 97/397 (24%), Positives = 155/397 (39%), Gaps = 85/397 (21%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           +S+ + +   + +    R LG+   D + IFA N   + I      +             
Sbjct: 6   ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQS----------- 54

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
                          ++ VP L+D    L   A+     ++   S +   + K+ SF +L
Sbjct: 55  ---------------LVIVP-LYDT---LGEEAIEY-ILNETEISIVFCDAVKVYSFEEL 94

Query: 175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGE 233
            EL G    +P    K  D A ++Y+SGTTG  KGV+LTH N +A    +     E +G 
Sbjct: 95  EEL-GKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGP 153

Query: 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
            D V +  LP+ H+F   V     L  G   +     D       I++ + TV+  VP +
Sbjct: 154 TD-VYISYLPLAHIFERVVENVC-LYIG-GRIGYYSGDTRGLKGDIKELKPTVFVGVPRV 210

Query: 294 -------ILA-LAKNSLVRK--FDISS--------------------------------- 310
                  ILA +     +++  F+ +                                  
Sbjct: 211 LDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKIKAALGGR 270

Query: 311 LKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTL 370
           ++L+ SG APL  +  E   +   G  + Q GYG+TETCA  +L +P  G   +G  G  
Sbjct: 271 VRLMLSGGAPLSPDTQEFL-RVALGCPVLQ-GYGLTETCAGGTLSDP--GDTTTGHVGPP 326

Query: 371 VAGVEAQIVSVDTL--KPLPPNQLGEIWVRGPNVTPG 405
           +   E ++V V  +          GEI +RGPNV  G
Sbjct: 327 LPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKG 363

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  112 bits (282), Expect = 7e-27
 Identities = 96/382 (25%), Positives = 169/382 (44%), Gaps = 21/382 (5%)

Query: 35  RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI 94
           + + +   K+A++D +   S ++S       ++++     GI   D V    P    F I
Sbjct: 31  QTARAMPDKIAVVD-NHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTI 89

Query: 95  CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKD 154
            +L  + +GA++    P +  +EL   +     K+    P L+ + + ++L   +L  ++
Sbjct: 90  IYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA-PTLFKQTRPVDL---ILPLQN 145

Query: 155 KVSSSGLISRSSKIVSFHDLIELSGSVTDIP----DVSVKQTDAAALLYSSGTTGVSKGV 210
           ++     I    K+      + LS  + D       ++    + AA+L++SGT G+ KGV
Sbjct: 146 QLPQLQQIVGVDKLAPATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGV 205

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF 270
           +LTH N +A+     A   L      V +   P+ H  G    +      G   V +  F
Sbjct: 206 MLTHNNILASERAYCARLNLTW--QDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIF 263

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
             +  L  +E+ R T      P I  L      +  D+S+L+    G   + K++  +CQ
Sbjct: 264 TPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQ 323

Query: 331 KNIPGATIFQVGYGMTETC--APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP 388
           +   G  +  V YG TE+   A ++L++PL   R   + G   AGVE ++V  +  K LP
Sbjct: 324 QR--GIKLLSV-YGSTESSPHAVVNLDDPL--SRFMHTDGYAAAGVEIKVVD-EARKTLP 377

Query: 389 PNQLGEIWVRGPNVTPGIVYIN 410
           P   GE   RGPNV  G  Y++
Sbjct: 378 PGCEGEEASRGPNVFMG--YLD 397

Length = 547

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  111 bits (279), Expect = 9e-27
 Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 16/211 (7%)

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS 251
            D AA+LY+SGTTG  KGV+LTH   + A+ + +    L    D V+L  LP+FH+   +
Sbjct: 81  VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGL--RPDDVLLTPLPLFHINAQA 138

Query: 252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL-VRKFDISS 310
             +Y  L  G  +V + +F        + K+  TV+ ++  +   L K        D   
Sbjct: 139 YSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRD-HP 197

Query: 311 LKLVGSGAAPLGKELMEDCQK--NIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAG 368
           L+ V    APL   +    ++   +        GYGMTET  PI            GS G
Sbjct: 198 LRFVFG--APLPAAIWPAFEERFGVKLVE----GYGMTETGVPI---IAPGDPAPPGSCG 248

Query: 369 TLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 399
               GVE +IV  D  + +PP ++GE+ VR 
Sbjct: 249 RPRPGVEVRIVDEDG-REVPPGEVGELVVRP 278

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  112 bits (281), Expect = 1e-26
 Identities = 102/387 (26%), Positives = 156/387 (40%), Gaps = 33/387 (8%)

Query: 32  FLFRNSASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
            L    AS   K A+             ++ +  ++V +V+     LG+ + DVV    P
Sbjct: 29  DLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLP 88

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDK------VK 141
           N   F + +L    IGA+ +   P++   ELS  +K +  K+++ VP+ +         +
Sbjct: 89  NWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLV-VPKTFRGFDHAAMAR 147

Query: 142 DLN--LPA----VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
            L   LPA    V++G     S   L+   +          L+      PD      D  
Sbjct: 148 RLRPELPALRHVVVVGGDGADSFEALLITPAWEQEPDAPAILARLRPG-PD------DVT 200

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
            L+Y+SGTTG  KGV+ T    +A  +  +    L    D V+L   PM H  G    L 
Sbjct: 201 QLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA--DDVILMASPMAHQTGFMYGLM 258

Query: 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             +  G   V    +D   A   I    VT      P +  L +        +SSL+   
Sbjct: 259 MPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFL 318

Query: 316 SGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAP--ISLENPLVGVRRSGSAGTLVAG 373
              AP+   L+E  +    GA I    +GMTE  A     L++P    R S + G  + G
Sbjct: 319 CAGAPIPGALVERARA-ALGAKIVS-AWGMTENGAVTLTKLDDPD--ERASTTDGCPLPG 374

Query: 374 VEAQIVSVDTLKPLPPNQLGEIWVRGP 400
           VE ++V  D   PLP  Q+G + VRG 
Sbjct: 375 VEVRVVDAD-GAPLPAGQIGRLQVRGC 400

Length = 547

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  107 bits (269), Expect = 4e-25
 Identities = 101/391 (25%), Positives = 153/391 (39%), Gaps = 54/391 (13%)

Query: 33  LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
           L  ++A Y  ++A+ID +    LS+++      +++   R LGI   D VL+  PN   F
Sbjct: 34  LTDHAARYPDRIAVIDGE--RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEF 91

Query: 93  PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT--VPELWDK--------VKD 142
            I F  ++ +G     A P +  SEL          L+I       +D          K 
Sbjct: 92  YITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKH 151

Query: 143 LNLPAVLL-GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
             L  V++ G  +  S           V    L   +G  T  P     +   A    S 
Sbjct: 152 PTLRHVIVAGEAEHPS-----------VLEAALCHPAGLFTPAPPADAGEV--AFFQLSG 198

Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSVI-LYDQL 258
           GTTG  K +  TH ++  +   + A  E+ G  D   V LC LP  H F LS        
Sbjct: 199 GTTGTPKLIPRTHNDYYYS---VRASAEICG-FDQQTVYLCALPAAHNFPLSSPGALGVF 254

Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV       E+    IE++ VTV  +VPP+     + +   + D+SSL+L+  G 
Sbjct: 255 LAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGG 314

Query: 319 APLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGV---- 374
           A L   L       + G  + QV +GM E          LV   R      ++       
Sbjct: 315 ARLSATLARRVPAVL-GCQLQQV-FGMAEG---------LVNYTRLDDPPEIIIHTQGRP 363

Query: 375 -----EAQIVSVDTLKPLPPNQLGEIWVRGP 400
                E ++V  D   P+ P ++GE+  RGP
Sbjct: 364 LSPDDEVRVVDADG-NPVAPGEVGELLTRGP 393

Length = 542

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  107 bits (268), Expect = 5e-25
 Identities = 88/381 (23%), Positives = 155/381 (40%), Gaps = 44/381 (11%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D   SF +      + +     LG+   D V +   N   F       + +GA A   N 
Sbjct: 9   DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNW 68

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDL---NLPAVLLGSKDKVSSSGLISRSSKI 168
            +   E++  ++DS  +++I   +L   +       +  + + +  +++++  IS +   
Sbjct: 69  HFKPEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLT 128

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDA-AALLYSSGTTGVSKGVILTHKNFIAASLMISAH 227
                 I+  G +               +++Y+SGTTG  KGV    +   A +   +A 
Sbjct: 129 PPAGA-IDWEGWLAQQEPYDGPPVPQPQSMIYTSGTTGHPKGV----RRA-APTPEQAAA 182

Query: 228 QELVGELDH------VVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
            E +  L +        L   P++H     +GL        + G  +V   +FD E  L+
Sbjct: 183 AEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAG-----RLGGVLVLQPRFDPEELLQ 237

Query: 278 AIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335
            IE++R+T   +VP + + L K    +  K+D+SSL+ V   AAP        C  ++  
Sbjct: 238 LIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAP--------CPADVKR 289

Query: 336 ATIFQVG------YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP 389
           A I   G      YG TE+ A ++       +   G+ G    G E + V  D  +PLP 
Sbjct: 290 AMIEWWGPVIYEYYGSTESGA-VTFATSEDALSHPGTVGKAAPGAELRFVDEDG-RPLPQ 347

Query: 390 NQLGEIWVRGPNVTPGIVYIN 410
            ++GEI+ R     P   Y N
Sbjct: 348 GEIGEIYSRIA-GNPDFTYHN 367

Length = 509

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  105 bits (265), Expect = 1e-24
 Identities = 97/374 (25%), Positives = 153/374 (40%), Gaps = 33/374 (8%)

Query: 33  LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF 92
           L R +  Y  +  L+        ++++        +H+    G+ + D V +   N I F
Sbjct: 27  LARQAERYPDRPLLVFGG--TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEF 84

Query: 93  PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK-----DLNLPA 147
              FLG   +GAIA   N      +L   +++S  +L++    L   ++     DL LPA
Sbjct: 85  LDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPA 144

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVS 207
           V L   D  +S  + +             L       P  +V+  D AA+LY+SGTTG S
Sbjct: 145 VWL--LDAPASVSVPAG-------WSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPS 195

Query: 208 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267
           KGV   H  F       SA    +G  D V+   LP+FH   L+   +  L  G   V  
Sbjct: 196 KGVCCPHAQFYWWGRN-SAEDLEIGA-DDVLYTTLPLFHTNALNA-FFQALLAGATYVLE 252

Query: 268 GKFDIEMALRAIEKYRVTVWWVV---PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
            +F       A+ ++  TV +++     I+L+       R   +  + L     A L   
Sbjct: 253 PRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRV-RVALGPGVPAALHAA 311

Query: 325 LMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL 384
             E       G  +   GYG TET   I++ +     +R GS G L  G EA++V     
Sbjct: 312 FRERF-----GVDLLD-GYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVDEHD- 361

Query: 385 KPLPPNQLGEIWVR 398
           + LP  + GE+ +R
Sbjct: 362 QELPDGEPGELLLR 375

Length = 542

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  104 bits (262), Expect = 2e-24
 Identities = 88/387 (22%), Positives = 144/387 (37%), Gaps = 88/387 (22%)

Query: 38  ASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL 97
           A +  + AL+     ++L++++ K    +++     LG    D V ++   S       L
Sbjct: 2   AKHPDRPALVVGG--DTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAIL 59

Query: 98  GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS 157
             +  GA        Y                   VP       D + PA          
Sbjct: 60  ACLKAGA-------AY-------------------VP------LDPSQPA---------- 77

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
                 R +KI+   +    +  V D         D A +L++SG+TG  KGV ++H N 
Sbjct: 78  -----ERIAKIL---EAAGPAALVAD-------PDDLAYILFTSGSTGKPKGVQISHANL 122

Query: 218 IA-ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMA 275
            +    M+      + E D V     P F  F LSV  L+  L  G  +  + K  I   
Sbjct: 123 ASFLDWMVEDFD--LTEGD-VFSNQAP-FS-FDLSVFDLFPALASGATLYVIPKEQIADP 177

Query: 276 L---RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKN 332
           L     ++++ +TVW  VP     L  +  +    + SL+        L K+L +  ++ 
Sbjct: 178 LALFEFLKEHGLTVWVSVPSFASLLLLSRELNPESLPSLRTFLFCGEVLPKKLAKALRRR 237

Query: 333 IPGATIFQVGYGMTETC---------APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT 383
            P A I    YG TE                 N  + +      G    G+ A I+  D 
Sbjct: 238 FPNARII-NLYGPTEATVAVTAYEVTPEPLSRNEPLPI------GYPKPGLRALILDED- 289

Query: 384 LKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            +P+PP + GE+ + GP V+PG  Y+N
Sbjct: 290 GRPVPPGEEGELVIAGPQVSPG--YLN 314

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score =  104 bits (262), Expect = 3e-24
 Identities = 94/398 (23%), Positives = 155/398 (38%), Gaps = 72/398 (18%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           ALID   D  LS ++ +++V +++      G+ + D V ++ PN I + + FL    +GA
Sbjct: 28  ALID--EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDK--------- 155
                N  Y   E++  +     + ++    +W   K ++  A+L               
Sbjct: 86  TVIAVNTRYRSHEVAHILGRGRARWLV----VWPGFKGIDFAAILAAVPPDALPPLRAIA 141

Query: 156 -VSSSG------LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLY-SSGTTGVS 207
            V  +             ++ +  D    + +     D      DA ALL+ +SGTT   
Sbjct: 142 VVDDAADATPAPAPGARVQLFALPDPAPPAAAGERAADP-----DAGALLFTTSGTTSGP 196

Query: 208 KGV------ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           K V      +L H   IA +               V+L  LP   VFG S +L   L  G
Sbjct: 197 KLVLHRQATLLRHARAIARAYGYDP--------GAVLLAALPFCGVFGFSTLL-GALAGG 247

Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--------DISSLKL 313
             +V    FD     RA+ ++RVT              + ++R+         D  S +L
Sbjct: 248 APLVCEPVFDAARTARALRRHRVT---------HTFGNDEMLRRILDTAGERADFPSARL 298

Query: 314 VGSGA-APLGKELMED-CQKNIPGATIFQVGYGMTETCAPISLE--NPLVGVRRSGSAGT 369
            G  + AP   EL      + +P   +    YG +E  A ++L+     V VR  G  G 
Sbjct: 299 FGFASFAPALGELAALARARGVPLTGL----YGSSEVQALVALQPATDPVSVRIEG--GG 352

Query: 370 LVAGVEAQIVSVDTLKP--LPPNQLGEIWVRGPNVTPG 405
             A  EA++ + D      LP  + GEI +R P++  G
Sbjct: 353 RPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRG 390

Length = 540

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score =  103 bits (258), Expect = 1e-23
 Identities = 100/399 (25%), Positives = 156/399 (39%), Gaps = 76/399 (19%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI---GAIASTA 109
           + LSF++  +    ++H     GI +    ++    S+ F   F    A+   GA+    
Sbjct: 40  DELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEF---FALTFALFKAGAVPVLV 96

Query: 110 NPVYTVSELSKQVKDSNPKLVITVPE--------LWDKVKDLNLPAVLLGSKDKVSSSGL 161
           +P   +  L + + ++ P   I +P+         W K             +  V+  G 
Sbjct: 97  DPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGK----------PSVRRLVTVGG- 145

Query: 162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS 221
             R     +    +   G+    P   +   D AA+L++SG+TG  KGV+ TH  F A  
Sbjct: 146 --RLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEA-- 201

Query: 222 LMISAHQEL----VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SM-----GKF 270
             I A +E      GE+D   L   P+F +FG ++        G   V   M        
Sbjct: 202 -QIEALREDYGIEPGEID---LPTFPLFALFGPAL--------GMTSVIPDMDPTRPATV 249

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
           D      AIE+Y VT  +  P ++  L +        + SL+ V S  AP+   ++E  +
Sbjct: 250 DPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFR 309

Query: 331 KNIP-GATIFQVGYGMTETCAPIS---LENPLVGVR---RSGSAGTLV----AGVEAQIV 379
             +P  A I    YG TE   PIS       L   R    +G AG  V     GVE +I+
Sbjct: 310 AMLPPDAEIL-TPYGATE-ALPISSIESREILFATRAATDNG-AGICVGRPVDGVEVRII 366

Query: 380 SVDT--------LKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           ++             L   ++GEI V GP VT    Y N
Sbjct: 367 AISDAPIPEWDDALRLATGEIGEIVVAGPMVTRS--YYN 403

Length = 552

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  101 bits (253), Expect = 4e-23
 Identities = 98/392 (25%), Positives = 170/392 (43%), Gaps = 40/392 (10%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           HFL + +  +  ++AL+  D   S ++ +  + V  ++ +    G+ K D +L+ + N  
Sbjct: 11  HFLRQAARRFPDRIALVWGD--RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCN 68

Query: 91  H-FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI---TVPELWDKVKDLNLP 146
             F   F     +GA+    N   T  E++   + S  + +I     PE        +  
Sbjct: 69  QMFESMF-AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPE--------HAA 119

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
           AV   S D ++    I  +   + +  L+        + + +V   D     ++SGTTG 
Sbjct: 120 AVRAASPD-LTHVVAIGGARAGLDYEALVA-RHLGARVANAAVDHDDPCWFFFTSGTTGR 177

Query: 207 SKGVILTHKNFIAASLMISAH-QELVGELDH--VVLCVLPMFHVFGLSVILYDQLQKGNC 263
            K  +LTH      + +I+ H  +L+         L V P+ H  G+  +   Q+ +G  
Sbjct: 178 PKAAVLTHGQM---AFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC--QVARGAA 232

Query: 264 VVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            V +   +FD       +E++RVT  + VP I+  L ++  V ++D SSL+ V    AP+
Sbjct: 233 TVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPM 292

Query: 322 GKELMEDCQKNIP--GATIFQVGYGMTE-----TCAPISLENPLVGVR-RSGSAGTLVAG 373
                 D ++ +   G  + Q  +G+ E     T  P +L +   G   R G+ G    G
Sbjct: 293 ---YRADQKRALAKLGKVLVQY-FGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTG 348

Query: 374 VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           +E QI   D  + LPP + GEI V GP V  G
Sbjct: 349 MEVQIQD-DEGRELPPGETGEICVIGPAVFAG 379

Length = 528

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  100 bits (251), Expect = 4e-23
 Identities = 90/357 (25%), Positives = 149/357 (41%), Gaps = 66/357 (18%)

Query: 49  ADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST 108
             + E  +F Q K    +++++ R LG+ + D V ++ P S    I  L V  +GA++  
Sbjct: 1   DGTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVP 60

Query: 109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 168
            + ++    +  +++DS  +++                                      
Sbjct: 61  LSVLFGPDAVEHRLRDSGARVL-------------------------------------- 82

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
                       VTD  D      D A L+Y+SGTTG  KG +  H+  +     +  + 
Sbjct: 83  ------------VTDGSD------DPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYF 124

Query: 229 ELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTV 286
           EL      V         + GL  +L   L  G  VV+  M +FD E A   + +Y VT 
Sbjct: 125 ELAPRPGDVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTN 184

Query: 287 WWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYG 344
            + +PP  L +     S   ++D+  L+ V SG   LG+EL+E  +  + G T+ +  YG
Sbjct: 185 AF-LPPTALKMMRRVGSERARYDL-RLRAVASGGESLGEELLEWARDEL-GLTVNE-FYG 240

Query: 345 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN 401
            TE    +      +G  R GS G  V G E  +V  D  +P+PP ++GEI V+ P+
Sbjct: 241 QTEANLVVG-NCAALGPARPGSMGKPVPGHEVAVVD-DAGRPVPPGEVGEIAVKRPD 295

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  100 bits (250), Expect = 9e-23
 Identities = 102/380 (26%), Positives = 155/380 (40%), Gaps = 55/380 (14%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           K A+I A + E +++ +      +++H FR LG+ + D V IF  N++ +          
Sbjct: 13  KPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERS 72

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVIT-------VPELWDKVKDLNLPAVLLGSKDK 155
           G   +  N   T +E +  V DS  + +IT          L  +   +    VL G  + 
Sbjct: 73  GLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGE- 131

Query: 156 VSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI--LT 213
                        V + + +      T I D    ++    +LYSSGTTG  KG+   L 
Sbjct: 132 ---------LEGFVGYAEAVA-GLPATPIAD----ESLGTDMLYSSGTTGRPKGIKRPLP 177

Query: 214 HKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDI 272
            +       + +  Q L G   D V L   P++H      ++    + G  V+ M  FD 
Sbjct: 178 EQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVI-RLGGTVIVMEHFDA 236

Query: 273 EMALRAIEKYRVTVWWVVPPI---ILALAKNSLVR-KFDISSLKLVGSGAAPLG---KEL 325
           E  L  IE+Y VT   +VP +   +L L +   VR K+D+SSL++    AAP     KE 
Sbjct: 237 EQYLALIEEYGVTHTQLVPTMFSRMLKLPEE--VRDKYDLSSLEVAIHAAAPCPPQVKEQ 294

Query: 326 MEDCQKNIPGATIFQVGYGMTE---TCAPIS---LENPLVGVRRSGSAGTLVAGVEAQIV 379
           M D      G  I +  Y  TE     A  S   L +P       G+ G  + G    I+
Sbjct: 295 MIDWW----GPIIHEY-YAATEGLGFTACDSEEWLAHP-------GTVGRAMFGD-LHIL 341

Query: 380 SVDTLKPLPPNQLGEIWVRG 399
             D    LPP + G IW  G
Sbjct: 342 D-DDGAELPPGEPGTIWFEG 360

Length = 511

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 98.2 bits (245), Expect = 4e-22
 Identities = 94/386 (24%), Positives = 151/386 (39%), Gaps = 58/386 (15%)

Query: 40  YSSKLALI--DADSD-ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF 96
           Y  K ALI   +       S+ +    + + ++ F  LGI K D V +   N   F  C+
Sbjct: 20  YGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCW 79

Query: 97  LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV 156
            G+  IGAI    N      E +  +++S   L++T  +         +   +       
Sbjct: 80  FGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQF------YPMYRQIQQEDATP 133

Query: 157 SSSGLISRS-----SKIVSFHDLI-ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
                ++R        + SF  L  +   ++   P +S    D A +L++SGTT   KGV
Sbjct: 134 LRHICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTD--DTAEILFTSGTTSRPKGV 191

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV-FGLSVILYDQLQKGNCVVSMGK 269
           ++TH N   A    SA Q  + + D V L V+P FH+    +  +      G   V + K
Sbjct: 192 VITHYNLRFAGYY-SAWQCALRD-DDVYLTVMPAFHIDCQCTAAM-AAFSAGATFVLLEK 248

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALA--------KNSLVRKF----DISSLKLVGSG 317
           +        + KYR T+   +P +I  L         +   +R+     ++S  +     
Sbjct: 249 YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQE----- 303

Query: 318 AAPLGKELMEDCQKNIPGATIFQV----GYGMTETCAPISLENPLVGVRRSGSAGTLVAG 373
                K+  E           F V     YGMTET   I  + P    RR  S G     
Sbjct: 304 -----KDAFE---------ERFGVRLLTSYGMTETIVGIIGDRP-GDKRRWPSIGRPGFC 348

Query: 374 VEAQIVSVDTLKPLPPNQLGEIWVRG 399
            EA+I      +PLP  ++GEI ++G
Sbjct: 349 YEAEIRDDHN-RPLPAGEIGEICIKG 373

Length = 517

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 97.4 bits (243), Expect = 8e-22
 Identities = 105/454 (23%), Positives = 164/454 (36%), Gaps = 107/454 (23%)

Query: 18  PLVLPSDPSFSMVHFLFRNSASYSSK-LALIDAD-SDESLSFSQFKSIVIKVSHSFRHLG 75
           PL LP     ++   L R +     + +  IDAD S+E  S+++      ++    R LG
Sbjct: 1   PLPLPPGAPRTLEEALQRAAEHAPGRGITYIDADGSEEFQSYAELLEEAERILAGLRALG 60

Query: 76  ITKKD-VVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL----- 129
           +   D V+L    N   F   F   +  G +        T  E +  V     KL     
Sbjct: 61  LKPGDSVILQLERNE-DFVTAFWACVLGGFVPVPVAVPPTYDEPNAAVA----KLRNIWE 115

Query: 130 ------VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
                 ++T   L   +  L   A                   + +    + EL  +  D
Sbjct: 116 LLGSPVILTDAALVAALAGLRTRA-----------------GLEALRVLAIEELRSAPPD 158

Query: 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--------LD 235
            P    +  D A LL +SG+TGV K V+LTH+N +A S           +        LD
Sbjct: 159 APLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLD 218

Query: 236 HVVLCVLPMFHVFGLSV-----------ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRV 284
           HV    + M H+  + +           IL D L+                L  I++YRV
Sbjct: 219 HVG--GIVMLHLRDVYLGCQQIHVPTDYILADPLR---------------WLDLIDRYRV 261

Query: 285 TVWWVVPPIILALAKNSL----VRKFDISSLKLVGSGA----APLGKELMEDCQKNIPGA 336
           T+ W  P    AL  ++L     R +D+SSL+ + +      A   +  +E        A
Sbjct: 262 TITW-APNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPA 320

Query: 337 TIFQVGYGMTETCAPISLENPLV------GVRRSGSAGTL-------------------V 371
              +  +GM+ETC+ ++            GV      G L                   +
Sbjct: 321 DAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPI 380

Query: 372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            GV  +IV  +    LP  ++G + VRGP VT G
Sbjct: 381 PGVAIRIVD-EDGALLPEGEVGRLQVRGPTVTSG 413

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 96.2 bits (239), Expect = 3e-21
 Identities = 84/398 (21%), Positives = 152/398 (38%), Gaps = 33/398 (8%)

Query: 12  YRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSF 71
            R +   L  P     ++       +A+    +AL+     + L++++  +   +++   
Sbjct: 212 EREVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGG--QQLTYAELDARANRLARLL 269

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131
             LG+   + V I A  S+   +  L V+  GA     +P+Y    L+  ++DS P L++
Sbjct: 270 ISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLL 329

Query: 132 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQ 191
           T   L   V D+ LP + L                      D        TD    ++  
Sbjct: 330 TQAHLR--VDDVGLPGLAL----------------------DDALSEIPDTDPIPQALLG 365

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF--HVFG 249
              A ++Y+SG+TG  KGV + H+  +A  L  +  +  +   D V+      F   VF 
Sbjct: 366 DALAYIIYTSGSTGQPKGVRIEHRA-LANLLNDAGARFGLDADDRVLALASLSFDASVFE 424

Query: 250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII--LALAKNSLVRKFD 307
           +   L +   +     ++ + D    L  +E   +TV  +VP ++  L LA  +      
Sbjct: 425 IFGALLEG-ARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISP 483

Query: 308 ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSA 367
              L+ + SG   L   L++   +    A      YG TE             +      
Sbjct: 484 CERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPI 543

Query: 368 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           G  VA  +  I+    L+PLP    GE+++ G  +  G
Sbjct: 544 GRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALG 580

Length = 642

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 95.1 bits (237), Expect = 6e-21
 Identities = 111/413 (26%), Positives = 179/413 (43%), Gaps = 53/413 (12%)

Query: 40  YSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC 95
              ++ALI       +  + ++++    V +++   R LG+ K D V+I+ P      I 
Sbjct: 55  RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIA 114

Query: 96  FLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------VP--ELWDKVKDL 143
            L    IGAI S     +   EL+ ++ D+ PKL++T          VP   L DK  +L
Sbjct: 115 MLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALEL 174

Query: 144 NL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYS 200
           +      VL+ ++ +V +     R    + + +L+  +  V     V V+ TD   +LY+
Sbjct: 175 SQHKPHKVLILNRGQVPAPLKPGRD---LDWAELMAKARPV---DCVPVESTDPLYILYT 228

Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260
           SGTTG  KGV+     + A +L  S       +   V      +  V G S I+Y  L  
Sbjct: 229 SGTTGKPKGVVRDTGGY-AVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLH 287

Query: 261 GN-CVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN----SLVRKFDISSL 311
           G   V+  GK     D     R IE+Y V   +  P  I A+ K       ++K+D+SSL
Sbjct: 288 GATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSL 347

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVR----RSGSA 367
           + +      L    +E  +K +    I    +  TET  PI+     VG+     + GS 
Sbjct: 348 RALFLAGERLDSPTLEWIEKTLGVPVIDH--WWQTETGWPIT--ANCVGLELLPIKPGSP 403

Query: 368 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 420
           G  V G + Q++  +T + L P +LG I ++ P + PG          L LWG
Sbjct: 404 GKPVPGYDVQVLD-ETGEELGPGELGNIVIKLP-LPPG--------CLLTLWG 446

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 94.0 bits (234), Expect = 6e-21
 Identities = 82/358 (22%), Positives = 123/358 (34%), Gaps = 77/358 (21%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           +F++ K    + ++  + LG+ + D V +  P         LG I +GA+     P  T 
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFI---PGTT- 57

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
                                             LG KD             I    +  
Sbjct: 58  ---------------------------------QLGPKD-------------IRYRLERA 71

Query: 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD 235
                VT          D A L ++SGTTG+ K V+ TH   +   +  +   +L    D
Sbjct: 72  GARAIVTS-------ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDL--RPD 122

Query: 236 HVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPI 293
            +   +       G    L+     G  V      +FD E  L  +E+Y VT +   P  
Sbjct: 123 DLHWTIADPGWAKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTA 182

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPIS 353
              L +  L   +D S L+ V S   PL  E+++  +    G  I   GYG TET     
Sbjct: 183 YRMLLQQDL-SSYDFSHLRHVVSAGEPLNPEVIDWWRAAT-GLPIRD-GYGQTETGL--- 236

Query: 354 LENPLVGVR-----RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGI 406
               LV        + GS G    G    I+  +    LPP + G+I VR     PG+
Sbjct: 237 ----LVANFPGMEVKPGSMGRPAPGYRVAIIDDEG-NELPPGEEGDIAVRVKPRPPGL 289

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 85/352 (24%), Positives = 142/352 (40%), Gaps = 64/352 (18%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
            S+ + K +  + ++    LG+ K + V    P S    +  LG + +GA+       + 
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
              +  +++    K++IT PEL+++                                   
Sbjct: 61  PEPIRDRLELGEAKVLITTPELYER----------------------------------- 85

Query: 175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 234
                  TD P+      D A L ++SGTTG  KGV+  H+  +A     +A   L    
Sbjct: 86  -------TD-PE------DPALLHFTSGTTGKPKGVLHVHRAVVAHY--ATARYVLDLRP 129

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKG-NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
           D V  C      V G S  +   L  G   VV  G+FD E     +E+ +VTVW+  P  
Sbjct: 130 DDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTA 189

Query: 294 ILALAK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPGATIFQVGYGMTETC 349
           +  L +    L  ++D+SSL+ + S   PL  E++   +K   +P        +  TET 
Sbjct: 190 LRMLMRAGPELAARYDLSSLRHIASVGEPLNPEVVVWGEKVLGMP----IHDTWWQTETG 245

Query: 350 APISLENPLVGVRRSGSAGTLVAGVEAQIVSVD---TLKPLPPNQLGEIWVR 398
           A I + N      + GS G  + G+EA ++  D         P Q+GE+ ++
Sbjct: 246 A-IMIANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALK 296

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 93.8 bits (234), Expect = 1e-20
 Identities = 93/378 (24%), Positives = 145/378 (38%), Gaps = 40/378 (10%)

Query: 36  NSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC 95
            +     + ALID     +L++++       ++     LG+   D V + A N   F + 
Sbjct: 58  AARRAPDRAALID--ERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLA 115

Query: 96  FLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLP--AVLLG 151
                 +GA     N  ++  +L++       K ++   E  D +  L  +L       G
Sbjct: 116 LYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGG 175

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
           + D    SG     S   +  DLI   GS T       K      ++ +SGTTG  KG  
Sbjct: 176 NPDDDEPSG-----STDETLDDLIA--GSSTAPLPKPPKP--GGIVILTSGTTGTPKGAP 226

Query: 212 LTHKNFIAASLMISAHQELVGELDHV-------VLCVLPMFHVFGLSVILYDQLQKGNCV 264
                        S    L G L  V        L   PMFH  G + +    +  G+ V
Sbjct: 227 RPE---------PSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTL-AMALGSTV 276

Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPL 321
           V   +FD E  L  I K++ T   VVP +   IL L    L  K+D SSLK++    + L
Sbjct: 277 VLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA-KYDTSSLKIIFVSGSAL 335

Query: 322 GKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV 381
             EL     +   G  ++ + YG TE  A  ++  P       G+ G    GV  +I+  
Sbjct: 336 SPELATRALEAF-GPVLYNL-YGSTE-VAFATIATPEDLAEAPGTVGRPPKGVTVKILD- 391

Query: 382 DTLKPLPPNQLGEIWVRG 399
           +    +P   +G I+V  
Sbjct: 392 ENGNEVPRGVVGRIFVGN 409

Length = 549

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 92.7 bits (230), Expect = 3e-20
 Identities = 79/354 (22%), Positives = 144/354 (40%), Gaps = 19/354 (5%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
            S+ +    V +++     LG+ + DVV    PN   F   +L    IGA+ +   P++ 
Sbjct: 54  FSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFR 113

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS--SGLISRSSKIVSFH 172
             ELS  +  ++ K+ + VP ++      +  A+    + K+ +    ++       SF 
Sbjct: 114 ERELSFMLNHADSKVFV-VPSVFRG---FDHAAMARELQSKLPALRQVVVIDGDGDDSFD 169

Query: 173 DLIELSGSVTDIPDVSVKQ------TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA 226
            ++            ++         D   L+Y+SGTTG  KGV+ T  N + +++   A
Sbjct: 170 RVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHT-ANTLFSNIHPYA 228

Query: 227 HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 286
            +  +G  D V+L   PM H  G    L   L      V    ++   A   I +  VT 
Sbjct: 229 ERLELGGGD-VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTF 287

Query: 287 WWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMT 346
                P +  L +        + SL       AP+   L+E   + + GA I    +GMT
Sbjct: 288 TMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GALIVS-AWGMT 345

Query: 347 ETCAPISLENPLVGVRRSG-SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 399
           E    +++  P   + ++  + G  + GVE +++  +    L   + G + VRG
Sbjct: 346 E-NGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANG-AKLSQGETGRLLVRG 397

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 91.9 bits (229), Expect = 4e-20
 Identities = 90/378 (23%), Positives = 152/378 (40%), Gaps = 90/378 (23%)

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT--VSELSKQVKDSNPKL 129
           + LG+   D + I + N   + I  L +   G ++    P+Y    +E  + V + +   
Sbjct: 24  QSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSV---PLYPTLTAETIRYVLEHSDAK 80

Query: 130 VITVPEL--WDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS-------FHDLIE---- 176
            + V +L  WD +K   +P             GL +      S       + DL+     
Sbjct: 81  ALFVGKLDDWDAMKAG-VPE------------GLPTIILFPYSTLKDHYKWDDLLAATEP 127

Query: 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH 236
           L G     P+      D A ++Y+SGTTG  KGV+L+   F  A+        L      
Sbjct: 128 LQGRPLPEPE------DLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPN--D 179

Query: 237 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVP- 291
            +L  LP+ H+    ++      +G  + S  +      ++     +++ R TV++ VP 
Sbjct: 180 RLLSYLPLAHIAERVIV------EGGSLYSGAEVFFVESLDTFAADLQRARPTVFFSVPR 233

Query: 292 ------------------------PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
                                   PI+ +L K  +++   +   +L GSGAAP+   L+ 
Sbjct: 234 LWTKFQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALI- 292

Query: 328 DCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPL 387
              + + G  I + GYGMTE  A  +L  P  G RR G+ G  + GVE +I         
Sbjct: 293 AWYRKL-GLPICE-GYGMTENFAYSTLNYP--GDRRIGTVGKPIPGVELKI--------- 339

Query: 388 PPNQLGEIWVRGPNVTPG 405
             ++ GEI +R P +  G
Sbjct: 340 --SEDGEILIRSPGLMSG 355

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 90.7 bits (225), Expect = 1e-19
 Identities = 101/375 (26%), Positives = 164/375 (43%), Gaps = 19/375 (5%)

Query: 30  VHFLFRN-SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
              L RN       K A ID  S  SLS+ + ++ V ++  + R LG+ +++ VL+   +
Sbjct: 7   EDLLDRNVVEGRGGKTAFIDDIS--SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLD 64

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
            + FPI FLG I  G +    N + T  + +  ++DS  ++V    EL   +K       
Sbjct: 65  GVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKA------ 118

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAAL-LYSSGTTGVS 207
            LG    +     +           L EL  + ++    +  Q D  A  LYSSG+TG+ 
Sbjct: 119 ALGKSPHLEH--RVVVGRPEAGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMP 176

Query: 208 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267
           KGV+ TH N    +  + A   L    D VV     +F  +GL   L   +  G   V M
Sbjct: 177 KGVVHTHSNPYWTA-ELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLM 235

Query: 268 GKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
           G+     A+   + +++ T+++ VP +  A+  +  +   D   L+L  S    L  E+ 
Sbjct: 236 GERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVG 295

Query: 327 EDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP 386
           +  Q    G  I   G G TE    I L N L G  R G++G  V G   ++V  D  + 
Sbjct: 296 QRWQARF-GVDIVD-GIGSTEM-LHIFLSN-LPGDVRYGTSGKPVPGYRLRLVG-DGGQD 350

Query: 387 LPPNQLGEIWVRGPN 401
           +   + GE+ + GP+
Sbjct: 351 VAAGEPGELLISGPS 365

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 89.5 bits (222), Expect = 3e-19
 Identities = 86/374 (22%), Positives = 160/374 (42%), Gaps = 50/374 (13%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           +LA +D       ++++  ++V +++   R  G    + + + A NS+           +
Sbjct: 11  RLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARV 70

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GAI    N   + SEL   ++D+ P+L                   LLG  D V++    
Sbjct: 71  GAIYVPLNWRLSASELDALLQDAEPRL-------------------LLGD-DAVAAGRTD 110

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
                +      I  + ++      S+     + +L++SGT+G  KGV+L+ +N    + 
Sbjct: 111 -----VEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAH 165

Query: 223 MISAHQELVGELDH--VVLCVLPMFHVFGLSVILYDQL-QKGNCVVSMGKFDIEMALR-- 277
                  ++G +D     LC  PMFH+ GL   +   L   G+ +VS G F+ +  L   
Sbjct: 166 NFG----VLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG-FEPKRTLGRL 220

Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK----LVGSGAAPLGKELMEDCQKNI 333
                 +T ++ VP +  A         FD ++L+    L   GA    ++++      I
Sbjct: 221 GDPALGITHYFCVPQMAQAFRAQP---GFDAAALRHLTALFTGGAPHAAEDILGWLDDGI 277

Query: 334 PGATIFQVGYGMTE--TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ 391
           P       G+GM+E  T   +S++  ++   ++G+AG     V+ ++V  D     P   
Sbjct: 278 PMVD----GFGMSEAGTVFGMSVDCDVIR-AKAGAAGIPTPTVQTRVVD-DQGNDCPAGV 331

Query: 392 LGEIWVRGPNVTPG 405
            GE+ +RGPN++PG
Sbjct: 332 PGELLLRGPNLSPG 345

Length = 488

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 87.8 bits (218), Expect = 7e-19
 Identities = 89/369 (24%), Positives = 141/369 (38%), Gaps = 76/369 (20%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           K A    +  +SL++ +   +  + ++  R LG++  D VL+  P+S      FL     
Sbjct: 1   KTAFYCGE--QSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFL----- 53

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
             + + A  V             NP L  T  +L   + D     +              
Sbjct: 54  ACLKAGAVAVAL-----------NPLL--TPQDLEHILDDSGAALL-------------- 86

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
                             VT+  D      D A  LY+SGTTG  KGV+  H++      
Sbjct: 87  ------------------VTE-AD------DIAYWLYTSGTTGKPKGVMHRHRD------ 115

Query: 223 MISAHQELVGEL-----DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMAL 276
            ++  +    EL        +     +F  +GL   L   L  G   V + G    E  L
Sbjct: 116 PLTFAEAFARELLGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVL 175

Query: 277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336
             + ++R TV + VP +  AL ++         S++L  S    L   L E       G 
Sbjct: 176 DLLARHRPTVLFGVPALYRALLESGAGSAPLFRSVRLCVSAGEALPAGLAERW-AEATGI 234

Query: 337 TIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 396
            I   G G TE    I + N   G  R G+ G  V G EA++V  ++ + +P   +G++W
Sbjct: 235 EILD-GIGSTEV-LHIFISNR-PGAARPGTTGRPVPGYEARLVD-ESGREVPAGTVGDLW 290

Query: 397 VRGPNVTPG 405
           VRGP++ PG
Sbjct: 291 VRGPSLAPG 299

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 87.9 bits (218), Expect = 1e-18
 Identities = 83/384 (21%), Positives = 137/384 (35%), Gaps = 40/384 (10%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L   +A Y   +A+I  +     S+ +       ++     LGI + D  ++  PN   
Sbjct: 28  ILRDQAARYPDAIAIICGN--RQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAE 85

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           F I F  ++ +G     A   +  SEL+       P L I    +       +       
Sbjct: 86  FYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALYI----IDRAHSLFDYDDFARQ 141

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
            + K+ +   I  + +       + L      +     K  + A    S G+TG  K + 
Sbjct: 142 LQSKLPTLRNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIP 201

Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCV 264
            TH ++   S+  S     +  L      LC LP  H + LS      + Y     G CV
Sbjct: 202 RTHNDYYY-SVRRSVE---ICWLTQQTRYLCALPAAHNYPLSSPGALGVFY----AGGCV 253

Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
           V             IE+++VTV  +VPP +    + +   + D+SSLKL+  G A     
Sbjct: 254 VLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGGAKFSAA 313

Query: 325 LMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL 384
                     G  + QV +GM E          LV   R      ++   + + +S D  
Sbjct: 314 AARRVPAVF-GCQLQQV-FGMAEG---------LVNYTRLDDPAEIIFTTQGRPMSPDDE 362

Query: 385 --------KPLPPNQLGEIWVRGP 400
                    P+ P + G +  RGP
Sbjct: 363 VRVVDDHGNPVAPGETGMLLTRGP 386

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 86.5 bits (214), Expect = 4e-18
 Identities = 90/380 (23%), Positives = 155/380 (40%), Gaps = 39/380 (10%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           AL+      ++S+     +V  ++      G+   D V +   ++  F +  L       
Sbjct: 34  ALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADL 93

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISR 164
           +    +P   ++E   + + +  ++V+      D   D   P         V+  G    
Sbjct: 94  VVVPLDPALPIAEQRVRSQAAGARVVLIDA---DGPHDRAEPTTRWWPL-TVNVGGDSGP 149

Query: 165 SSKIVSFHDLIELSGSVTDIPDVSVKQ---TDAAALLYSSGTTGVSKGVILTHKNFIAAS 221
           S   +S H    L  +    P  S  +    D A ++++ GTTG+ K V  TH N IA+S
Sbjct: 150 SGGTLSVH----LDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHAN-IASS 204

Query: 222 L--MISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SMGKFDIEMALR 277
           +  +I+ ++  +   D  V  V+P++H  GL   L   L  G  V+  + G+F       
Sbjct: 205 VRAIITGYR--LSPRDATV-AVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWD 261

Query: 278 AIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
            I+    T +  VP I   +L  A      +   ++L+ + S +APL  E  +  Q    
Sbjct: 262 DIKAVGATWYTAVPTIHQILLERAATEPSGR-KPAALRFIRSCSAPLTAETAQALQTEF- 319

Query: 335 GATIFQVGYGMTETCAPISL---------ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK 385
            A +    +GMTE    ++          ENP+V     G +     G + +IV  D L 
Sbjct: 320 AAPVVC-AFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRST----GAQIRIVGSDGL- 373

Query: 386 PLPPNQLGEIWVRGPNVTPG 405
           PLP   +GE+W+RG  V  G
Sbjct: 374 PLPAGAVGEVWLRGTTVVRG 393

Length = 534

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 85.2 bits (212), Expect = 6e-18
 Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 16/224 (7%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
           D A ++Y+SG+TG  KGV++ H+     +L+    +         VL        F  SV
Sbjct: 94  DLAYVIYTSGSTGRPKGVMVEHRGL--VNLLAWLQERYGLTAGDRVLQFAS--FSFDASV 149

Query: 253 I-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
             ++  L  G  +V        D E     + ++R+TV  +VP ++ AL     +    +
Sbjct: 150 WEIFPPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLD--ALEPAAL 207

Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSA- 367
            SL+LV  G   L  EL+   ++  PGA +    YG TET   ++           GS  
Sbjct: 208 PSLRLVIVGGEALPAELVRRWRELFPGARLVN-AYGPTETTVDVTYHEVDPDDLDGGSVP 266

Query: 368 -GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            G  +A     ++  + L+P+P    GE+++ G  V  G  Y+N
Sbjct: 267 IGRPIANTRVYVLD-EDLRPVPVGVPGELYIGGAGVARG--YLN 307

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 85.0 bits (211), Expect = 9e-18
 Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 22/225 (9%)

Query: 193 DAAAL-LYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVLCVLPMFHVFGL 250
           DA AL +Y+SGTTG  KGV+L+ +  IAA L  ++   +     D V++  LP+FHV GL
Sbjct: 128 DAPALIVYTSGTTGPPKGVVLS-RRAIAADLDALAEAWQWTA--DDVLVHGLPLFHVHGL 184

Query: 251 SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN-SLVRKFDIS 309
            + +   L+ GN  V  G+   E   +A+ +   T+++ VP +   +A +    R     
Sbjct: 185 VLGVLGPLRIGNRFVHTGRPTPEAYAQALSE-GGTLYFGVPTVWSRIAADPEAARAL--R 241

Query: 310 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQV--GYGMTETCAPISLENPLVGVRRSGSA 367
             +L+ SG+A L   + +     +   T  +    YGMTET   I+L     G RR G  
Sbjct: 242 GARLLVSGSAALPVPVFDR----LAALTGHRPVERYGMTETL--ITLSTRADGERRPGWV 295

Query: 368 GTLVAGVEAQIVSVDTLKPLP--PNQLGEIWVRGPNVTPGIVYIN 410
           G  +AGVE ++V  +   P+P     +GE+ VRGP +  G  Y+N
Sbjct: 296 GLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDG--YLN 337

Length = 471

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 84.6 bits (210), Expect = 1e-17
 Identities = 99/413 (23%), Positives = 160/413 (38%), Gaps = 110/413 (26%)

Query: 46  LIDADSDES-LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI----CFLG-V 99
            I+ D  E  +S+ Q  +  +KV  + + LGI   D V+    ++  F      C LG +
Sbjct: 6   FIEGDKKEKFISYEQLFTRALKVLGALQKLGIKPGDEVVFQIEDNEDFIYVFWACILGGI 65

Query: 100 IAIGAIASTANPV-YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS 158
           I +        P+ Y  ++  K       KL+     +W+    LN P  L+  +D + S
Sbjct: 66  IPV--------PLSYGNTDEHKL------KLL----RVWNI---LNNP-FLITDRDSLLS 103

Query: 159 SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFI 218
                                    +PD      D A + +SSG+TG  KGVILTHKN +
Sbjct: 104 -------------------------LPD------DIAFIQFSSGSTGEPKGVILTHKNLL 132

Query: 219 AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG--NCVVSMGKFDIE--- 273
                I    E+    + V L  +P+ H  GL          G    ++    F I    
Sbjct: 133 TNIEAIIEAAEI--TSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLF-IRRPL 189

Query: 274 MALRAIEKYRVTVWWVVPP-----IILALAKNSLVRKFDISSLKLVGSGAAP----LGKE 324
           + L    ++R T+  +  P      +L   K   +  +D+SS++L+ +GA P    L +E
Sbjct: 190 LWLDKASQHRATI--LSSPNFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEE 247

Query: 325 LMEDCQK-NIPGATIFQVGYGMTETCAPISLENP-----LVGVRRSG------------- 365
            +E      +    ++ V YG+ E    +S   P      V + R+              
Sbjct: 248 FLEKMAPFGLRPNAMYPV-YGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPK 306

Query: 366 --------SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
                     G+ + G E +IV  D  + LP   +G I ++G NVT G  Y N
Sbjct: 307 NSDAISFVEVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSG--YYN 356

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 84.2 bits (209), Expect = 2e-17
 Identities = 76/333 (22%), Positives = 125/333 (37%), Gaps = 46/333 (13%)

Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +AL+  D    L++++ +    +++H     G+   D V I+A N I +    LG     
Sbjct: 20  VALVCGD--RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR 77

Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLPAVLL------GSKDK 155
           A+    N  Y   EL   + DS+   ++   E   +V ++   LP +        GS + 
Sbjct: 78  AVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND 137

Query: 156 VSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
           +            V + D +       D  + S    D   LLY+ GTTG+ KGV+   +
Sbjct: 138 LLPGA--------VDYEDALAAGSPERDFGERS---PDDLYLLYTGGTTGMPKGVMWRQE 186

Query: 216 NFIAASL---------MISAHQELVGELDH----VVLCVLPMFHVFGLSVILYDQLQKGN 262
           +     L          I   +EL                P+ H  G        L  G 
Sbjct: 187 DIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAA-LFSGQ 245

Query: 263 CVV--SMGKFDIEMALRAIEKYRVTVWWVV-----PPIILALAKNSLVRKFDISSLKLVG 315
            VV     +FD +   R IE+ +V V  +V      P++ AL        +D+SSL  + 
Sbjct: 246 TVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEAR---GPYDLSSLFAIA 302

Query: 316 SGAAPLGKELMEDCQKNIPGATIFQVGYGMTET 348
           SG A     + E   + +P   +     G +ET
Sbjct: 303 SGGALFSPSVKEALLELLPNVVLTD-SIGSSET 334

Length = 533

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 83.8 bits (208), Expect = 2e-17
 Identities = 99/398 (24%), Positives = 170/398 (42%), Gaps = 44/398 (11%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+  +   K+A+I    +      +++ +    V + ++  + LG+ K D V I+ P   
Sbjct: 65  RHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIP 124

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV-- 148
              I  L    IGAI S     ++   L+ ++ D+  KLVIT  E     K + L A+  
Sbjct: 125 EAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVD 184

Query: 149 --LLGSKDKVSSSGLISRS-SKI-------VSFHDLIELSGSVTDIPDVSVKQTDAAALL 198
             L      V    ++ R+ + +       V +HDL+    +        +   D   +L
Sbjct: 185 EALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWHDLMA--KASAYCEPEPMDSEDPLFIL 242

Query: 199 YSSGTTGVSKGVILTHKNFIAASLMISAH--QELVGEL--DHVVLCVLPMFHVFGLSVIL 254
           Y+SG+TG  KGV+ T         ++ A    + V ++    +  C   +  + G S I+
Sbjct: 243 YTSGSTGKPKGVLHT-----TGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIV 297

Query: 255 YDQLQKG-NCVVSMGKFDIEMALR---AIEKYRVTVWWVVPPIILALAK--NSLVRKFDI 308
           Y  L  G   V+  G        R    IEK++VT+++  P  I AL +  +  V+K D+
Sbjct: 298 YGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDL 357

Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG--YGMTET-CAPISLENPLVGV--RR 363
           SSL+L+GS   P+  E      K + G     +   +  TET    I+   PL G    +
Sbjct: 358 SSLRLLGSVGEPINPEAWMWYYKVV-GKERCPIVDTWWQTETGGIMIT---PLPGATPTK 413

Query: 364 SGSAGTLVAGVEAQIVSVDTLKPLP-PNQLGEIWVRGP 400
            GSA     G+E  +V  +   P+  P + G + ++ P
Sbjct: 414 PGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQP 450

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 82.2 bits (203), Expect = 6e-17
 Identities = 89/378 (23%), Positives = 162/378 (42%), Gaps = 26/378 (6%)

Query: 30  VHFLFRNSASYS-SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           V  + R +A+ +    AL+D      L++S+ ++ V  V+      G+  +  V + APN
Sbjct: 3   VFEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPN 62

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S+   I  L +  +GA+ +  NP    +E+++ +K       +   +         + A+
Sbjct: 63  SVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVD------AQVMDAI 116

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                   S   +++    +     L E   +   I D   +    A + Y+SGTTG+ K
Sbjct: 117 ----FQSGSGVRVLALGDLV----GLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPK 168

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
           G ++  +   +  L +S    L     +VVL ++P++HV G   +L   L      V + 
Sbjct: 169 GAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVE 228

Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
           +FD   AL+ IE+ RVT  +  P  + ALA  +      + SL+ V    A +   ++E 
Sbjct: 229 EFDPADALKLIEQERVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATMPDAVLER 288

Query: 329 CQKNIPGATIFQVGYGMTETCAPISLENPLVGVR-RSGSAGTLVAGVEAQIVSV--DTLK 385
             +++PG  +    YG TE    + + +P  G   R G         E +IV +     +
Sbjct: 289 VNQHLPGEKVNI--YGTTEAMNSLYMRDPRTGTEMRPGFFS------EVRIVRIGGSPDE 340

Query: 386 PLPPNQLGEIWVRGPNVT 403
            LP  + GE+ V   + T
Sbjct: 341 ALPNGEEGELVVAAADAT 358

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 108/432 (25%), Positives = 167/432 (38%), Gaps = 63/432 (14%)

Query: 9   DG--IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALI----DADSDESLSFSQFKS 62
           DG  + +S  P          S+ H L + +A    +  L            +++ + K 
Sbjct: 33  DGSIVIKSRHPL----GPYPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKR 88

Query: 63  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELS--- 119
            V  ++ +   LG+     V+I + NSI   +  L  +  G  A+  +P Y  S +S   
Sbjct: 89  AVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAY--SLMSHDH 146

Query: 120 ---KQVKDS-NPKLVITVP-ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
              K + D   P++V       + +     L A+ L     V  +G     + I +F DL
Sbjct: 147 AKLKHLFDLVKPRVVFAQSGAPFARA----LAALDLLDVTVVHVTGPGEGIASI-AFADL 201

Query: 175 IELSGSVTDIPDVSVKQT--DAAA-LLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQEL 230
              +   T     ++     D  A  L++SG+TG+ K VI T +   A  ++        
Sbjct: 202 --AATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPRE 259

Query: 231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV-VSMGK---FDIEMALRAIEKYRVTV 286
                 V L  +P  H  G +      L  G  + +  GK      E  +R + +   TV
Sbjct: 260 PDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTV 319

Query: 287 WWVVPPIILALAK-----NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT---- 337
           +  VP     LA+     ++L R F   +L+L+  G A L  +L E  Q      T    
Sbjct: 320 YGNVPAGYAMLAEAMEKDDALRRSF-FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRI 378

Query: 338 IFQVGYGMTETCAPISLENPLVGV----RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG 393
            F  GYG TET AP +      G      R G  G  + GVE        LK  P     
Sbjct: 379 PFYTGYGATET-APTT-----TGTHWDTERVGLIGLPLPGVE--------LKLAPVGDKY 424

Query: 394 EIWVRGPNVTPG 405
           E+ V+GPNVTPG
Sbjct: 425 EVRVKGPNVTPG 436

Length = 624

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 77/301 (25%), Positives = 123/301 (40%), Gaps = 52/301 (17%)

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
            AV++G     ++  L  +  ++++  DL+        I  V   + D A +  +SG+TG
Sbjct: 110 KAVVVGEPFLAAAPVLEEKGIRVLTVADLLA----ADPIDPVETGEDDLALMQLTSGSTG 165

Query: 206 VSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
             K V +TH N  A   ++ ++A  ++      V++  LP+FH  G+   L   +  G  
Sbjct: 166 SPKAVQITHGNLYANAEAMFVAAEFDVE---TDVMVSWLPLFHDMGMVGFLTVPMYFGAE 222

Query: 264 VVSMGKFD------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK-----FDISSLK 312
           +V +   D      +   L  I KYR T+    P    AL    L R+     FD+SSL+
Sbjct: 223 LVKVTPMDFLRDPLLWAEL--ISKYRGTMT-AAPNFAYALLARRLRRQAKPGAFDLSSLR 279

Query: 313 LVGSGAAPLGKELMED-CQKNIP---GATIFQVGYGMTETCAPIS---LENPLV------ 359
              +GA P+    +ED                  YGM E    +S       LV      
Sbjct: 280 FALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDA 339

Query: 360 ---------------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 404
                            RR  + G  + G+E ++V  D  + LPP  +G I +RG +VTP
Sbjct: 340 DLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDED-GQVLPPRGVGVIELRGESVTP 398

Query: 405 G 405
           G
Sbjct: 399 G 399

Length = 545

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 70/337 (20%), Positives = 129/337 (38%), Gaps = 56/337 (16%)

Query: 33  LFRNSASYSSKLALIDADSDES---LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           L R++ +     A+  A  D     +S+++ +S V +++ + R LG+   D V  + PN 
Sbjct: 64  LLRHADN--DPAAIYAAGEDGERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNV 121

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKV 140
               I  L   +IGAI S+ +P + V  +  +     PK++  V             +K+
Sbjct: 122 PEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKI 181

Query: 141 KDL-----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
            ++     +L AV++     +SS    +                    +    +      
Sbjct: 182 AEIVKGLPSLEAVVV--VPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPL 239

Query: 196 ALLYSSGTTGVSK-------GVILTHKNFIAASLMISAHQELVGELDHVVL---CVLPMF 245
            +LYSSGTTG+ K       G +L H            H +L    D +         M+
Sbjct: 240 WILYSSGTTGLPKCIVHGAGGTLLQHLK------EHGLHCDL-RPGDRLFYYTTTGWMMW 292

Query: 246 H------VFGLSVILYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALA 298
           +      + G +++LYD    G+       +     L R   K  +T++      + AL 
Sbjct: 293 NWLVSGLLSGATLVLYD----GS-----PLYPDPDVLWRLAAKLGITIFGTSAKYLDALE 343

Query: 299 KNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNI 333
           K  +   R  D+SSL+ + S  +PL  E  +    ++
Sbjct: 344 KAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHV 380

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 79.9 bits (197), Expect = 5e-16
 Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 17/225 (7%)

Query: 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIA---ASLMISAHQELVGELDHVVLCVLPM 244
                D A +L++SGT  + KGV LTH N +A   A L   + +E     D V++  LP 
Sbjct: 179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKE-----DDVMMSFLPP 233

Query: 245 FHVFGLSVILYDQLQKGNCVV-SMGKFDIEMALRAIEKYRVTVWWVVP---PIILALAKN 300
           FH +G +      L  G  VV +      +  +  I++ +VT     P     IL  AK 
Sbjct: 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK 293

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
               +  + SL+ V  G       L ++  K  P   + Q GYG TE C+P+   N +  
Sbjct: 294 Q---ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQ-GYGTTE-CSPVITINTVNS 348

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            +     G  + G++  IVS +T  P+   + G +  RG ++  G
Sbjct: 349 PKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSG 393

Length = 539

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 79.1 bits (195), Expect = 7e-16
 Identities = 84/355 (23%), Positives = 140/355 (39%), Gaps = 71/355 (20%)

Query: 52  DESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110
           +E+ ++        +++H     LG+   + VL+ + N+     C+L V+  GAI  T  
Sbjct: 58  EETWTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTM 117

Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS 170
           P+    EL+  V                              K +++             
Sbjct: 118 PLLRAKELTTIV-----------------------------DKARIT------------- 135

Query: 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL 230
            H L +   +  D         D A + ++SGTTG+ KG +  H++ +A       H   
Sbjct: 136 -HALCDKRLTAAD---------DVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQ 185

Query: 231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVV 290
               D V +   P+   FGL  ++   L+ G   V + +    + L+AI+++R T+ +  
Sbjct: 186 PTP-DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTA 244

Query: 291 PPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTE--- 347
           P    A+     V+ FDISSL+   S    L  ++ +D      G  I   G G TE   
Sbjct: 245 PTAYRAMLI--KVKAFDISSLRKCVSAGETLPAKVWQD-WYERTGLKIID-GIGATEMLH 300

Query: 348 --TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 400
               A  + EN      + G+ G  V G EA+IV  D    +P  + G + VRGP
Sbjct: 301 IFISA--NEEN-----AKPGATGKPVPGYEARIVD-DQGNEVPRGEAGRLAVRGP 347

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 78.8 bits (195), Expect = 8e-16
 Identities = 76/386 (19%), Positives = 151/386 (39%), Gaps = 64/386 (16%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
             A+ID     +L++ +       ++ + R  G+   D+V +  P      +  LG++  
Sbjct: 3   ATAVID--GAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA     +P       +  +  +  + V+T P L                          
Sbjct: 61  GAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQPE---------------------- 98

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
              +  +        +      P   V   D A ++++SG+TG  KGV++TH+   A + 
Sbjct: 99  --EAPDLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRA--AVNT 154

Query: 223 MISAHQEL-VGELDHVVLCV------LPMFHVFGL-----SVILYDQLQKGNCVVSMGKF 270
           ++  ++   VG  D  VL +      L ++ +FG      +++L D+ ++          
Sbjct: 155 ILDVNRRFGVGPAD-RVLALSALHFDLSVYDIFGALSAGAALVLPDEARRR--------- 204

Query: 271 DIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327
           D +     ++++ VTVW  VP +   +L  A+++      + SL+LV      +  +L  
Sbjct: 205 DPDHWAELVQRHGVTVWNSVPALMDMLLTYAEDAARL---LPSLRLVMLSGDWIPLDLPR 261

Query: 328 DCQKNIPGATIFQVGYGMTETCAPISLENPLVGV---RRSGSAGTLVAGVEAQIVSVDTL 384
             +   PGA +  +G G TE  +  S+  P+  V    RS   G  +   +  ++  +  
Sbjct: 262 RLRALAPGARLVSLG-GATEA-SIWSIYYPIDDVDPDWRSIPYGKPLPNQKFYVLD-EDG 318

Query: 385 KPLPPNQLGEIWVRGPNVTPGIVYIN 410
           +  P    GE+++ G  V  G  Y  
Sbjct: 319 RDCPDWVPGELYIGGVGVALG--YWG 342

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 79.1 bits (196), Expect = 8e-16
 Identities = 97/394 (24%), Positives = 160/394 (40%), Gaps = 44/394 (11%)

Query: 38  ASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP 93
           A   +K+A+I      D   ++++ +    V + ++  + LG+ K D V I+ P     P
Sbjct: 58  AGRGNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELP 117

Query: 94  ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL---L 150
           I  L    IGAI S     ++   L+ ++ D+  KL+IT    +   K + L  ++   L
Sbjct: 118 IAMLACARIGAIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEAL 177

Query: 151 GSKDKVSSSGLISRSSKIVSF--------HDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
                V    ++ R+   V          HDL+    +        +   D   +LY+SG
Sbjct: 178 EKCPSVEKVIVVKRTGGEVPMVEGRDVWWHDLMA--KASPYCEPEPMDAEDPLFILYTSG 235

Query: 203 TTGVSKGVILTHKNFIAASLMISAHQELVGELDH----VVLCVLPMFHVFGLSVILYDQL 258
           +TG  KGV+ T         ++ A        D     V  C   +  + G S I+Y  L
Sbjct: 236 STGKPKGVVHTT-----GGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIVYGPL 290

Query: 259 QKG-NCVVSMGKFDIEMALR---AIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLK 312
             G   V+  G  D     R    +EKY+VT+++  P  I  L +  +   +K D+SSL+
Sbjct: 291 ANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLR 350

Query: 313 LVGSGAAPLGKELMEDCQKNIPGATIFQVG--YGMTET----CAPISLENPLVGVRRSGS 366
           L+GS   P+  E      + I G     +   +  TET      P+    PL    + GS
Sbjct: 351 LLGSVGEPINPEAWMWYYEVI-GKERCPIVDTWWQTETGGHMITPLPGATPL----KPGS 405

Query: 367 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 400
           A     GVE  IV  +    +     G + ++ P
Sbjct: 406 ATRPFPGVEPAIVDEEG-NEVEGGVEGYLVIKRP 438

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 82/369 (22%), Positives = 135/369 (36%), Gaps = 78/369 (21%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
           SL+F +      +++   R  GI K D V++  P           +  +GA+    +P  
Sbjct: 2   SLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGM 61

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
               L + ++++                    P   +G                      
Sbjct: 62  GRKHLGRCLEEAE-------------------PDAFIG---------------------- 80

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                     IP       D AA+L++SG+TG  KGV+ TH+ F AA +        + E
Sbjct: 81  ----------IPKAD----DPAAILFTSGSTGPPKGVVYTHRTF-AAQIDALRSLYGIRE 125

Query: 234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI 293
            D   L   P F +FG ++ +   +   +   +    D     +AI +   +  +  P +
Sbjct: 126 GD-RDLAAFPPFALFGPALGVTTVIPAMD-PTAPAALDPAKLAQAIREIGASCVFGSPAL 183

Query: 294 ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI-PGATIFQVGYGMTETCAP- 351
           +  +A+        + SL+ V S  AP+  +L+     N+ P A I    YG TE   P 
Sbjct: 184 LKNVARYCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTP-YGATE-ALPV 241

Query: 352 --ISLENPLV--GVRRSGSAGTLV----AGVEAQIV--------SVDTLKPLPPNQLGEI 395
             I     L          AG  V     G++ +I+        S D    LPP ++GEI
Sbjct: 242 ASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEI 301

Query: 396 WVRGPNVTP 404
            V GP+VT 
Sbjct: 302 IVSGPHVTR 310

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 78.0 bits (193), Expect = 2e-15
 Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 31/228 (13%)

Query: 38  ASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL 97
           A +  + AL+    D+S+S+++  +   + +H     G+ K DVV +   N   +   +L
Sbjct: 48  ARHPDRPALLF--EDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWL 105

Query: 98  GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---DKVKDLNLPAV---LLG 151
           G+  +GA+ +  N     + L+  +   + K +I   EL    ++ +          + G
Sbjct: 106 GLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAG 165

Query: 152 SKDKVSSSGLISRSSKIVSFHDLIELS-GSVTDIPDVSVKQT--DAAALLYSSGTTGVSK 208
                   G            DL   + G+ T  P      T  D A  +Y+SGTTG+ K
Sbjct: 166 GDTLDDPEGYE----------DLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPK 215

Query: 209 GVILTHKNFIAA----SLMISAHQELVGELDHVVLCVLPMFHVFGLSV 252
             +++H  ++ A      ++          D V+ C LP++H  G +V
Sbjct: 216 AAVMSHMRWLKAMGGFGGLLRLTP------DDVLYCCLPLYHNTGGTV 257

Length = 600

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 76.9 bits (189), Expect = 5e-15
 Identities = 103/437 (23%), Positives = 172/437 (39%), Gaps = 51/437 (11%)

Query: 35  RNSASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+      +LAL+   S+     +L++ Q    V   + + R LG+ + D VLI+ P   
Sbjct: 60  RHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIA 119

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------VP--ELWD 138
                 L    IGAI S     +    L+ ++ D+ PKL+++          +P   L D
Sbjct: 120 EAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLD 179

Query: 139 KVKDLNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
                     P VLL  +     + +     + V +  L         +P   ++  + +
Sbjct: 180 AAIAEAQHPPPHVLLVDR---GLAPMRLIPGRDVDYAAL-RTQHEDAQVPVEWLESNEPS 235

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
            +LY+SGTTG  KGV      + A +L +S           V+     +  V G S I+Y
Sbjct: 236 YILYTSGTTGKPKGVQRDVGGY-AVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVY 294

Query: 256 DQLQKG-NCVVSMG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKN--SLVRKFDIS 309
             L  G   V+  G     D  +    +E+Y V   +  P  I  L K   + +RK D+S
Sbjct: 295 APLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLS 354

Query: 310 SLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVR--RSGSA 367
           SL  +     PL  E       +  G  +    Y  TET  P+    P + ++  + GS 
Sbjct: 355 SLHWLFLAGEPL-DEPTAHWITDGLGKPVID-NYWQTETGWPVLAIMPGLDLKPVKLGSP 412

Query: 368 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV-------------YINFF-- 412
           G  + G   +++   T +P  PN+ G + V  P + PG +             Y + F  
Sbjct: 413 GLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPP-LPPGCLSTVWGDDARFLKTYWSHFKR 471

Query: 413 -VFTLFLWGCEHTDSFI 428
            +++ F WG    D + 
Sbjct: 472 PLYSSFDWGIRDEDGYT 488

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.4 bits (186), Expect = 6e-15
 Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 36/228 (15%)

Query: 197 LLYSSGTTGVSKGVILTHKNFIAASL------------MISAHQELVGELDHVVLCVLPM 244
           +LY+ GTTG+ KGV+   ++     L               A Q   G      L   P+
Sbjct: 8   MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPL 67

Query: 245 FHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVV-----PPIILAL 297
            H  G  + L   L  G  VV +   KFD +   R +EK+RV    +V      P++ AL
Sbjct: 68  MHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPLLEAL 126

Query: 298 AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENP 357
                  ++D+SSL+ + S  A    E+ +   + +P   +     G +ET    S    
Sbjct: 127 EAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVD-ALGASETGGGGS---- 178

Query: 358 LVGVRRSGSA---GTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGP 400
              V R+G A   G    G +  ++  D    +PP   ++G I   G 
Sbjct: 179 --SVSRAGGASATGKFELGPDTVVLDEDG-SEVPPGSGEVGWIARGGR 223

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 75.3 bits (186), Expect = 1e-14
 Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 22/227 (9%)

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
           ++    D A ++Y+SG+TG  KGV++TH+N    + + +    L       VL       
Sbjct: 94  LTSSPDDPAYVIYTSGSTGKPKGVVITHRNI--CNFLRAEGAILGIRPGDRVLQFAS--I 149

Query: 247 VFGLSV--ILYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLV 303
            F +S+  I    L  G  +V   +      L   + + RVTV  + P    +L   +L+
Sbjct: 150 AFDVSILEIFT-TLLAGGTLVIPPEELRLEDLAEFLNRLRVTVAHLTP----SLL--ALL 202

Query: 304 RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRR 363
              D+ SL+ +  G     + L     +      +    YG TE    ++     +   +
Sbjct: 203 DPEDVPSLRTLILGGEACPQAL---VDRWSKPRRLLN-TYGPTEAT--VTATASRLTPGK 256

Query: 364 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
             + G  +      ++  D    +P   +GE+ + GP V  G  Y+N
Sbjct: 257 PVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARG--YLN 301

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 75/292 (25%), Positives = 121/292 (41%), Gaps = 70/292 (23%)

Query: 167 KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA 226
           +IV++  L+   G  +  P    K  D A + Y+SGTTG  KGV+LTH N IA     S 
Sbjct: 197 EIVTYSKLLAQ-GRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL 255

Query: 227 HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF--DIEMALRAIEKYRV 284
             +     D V +  LP+ H++       +Q+   +  V++G +  D    +  +   R 
Sbjct: 256 STKF-YPSD-VHISYLPLAHIYERV----NQIVMLHYGVAVGFYQGDNLKLMDDLAALRP 309

Query: 285 TVWWVVP--------PIILALAKNSLVRK--FDIS------------------------- 309
           T++  VP         I  A+ ++  +++  F+ +                         
Sbjct: 310 TIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNK 369

Query: 310 -------SLKLVGSGAAPLGKELME---DCQKNIPGATIFQVGYGMTETCAPISLENPLV 359
                   ++ + SGA+PL  ++ME    C     G  + + GYGMTET   IS  +   
Sbjct: 370 IKAKLGGRVRFMSSGASPLSPDVMEFLRICF----GGRVLE-GYGMTETSCVISGMDE-- 422

Query: 360 GVRRSGSAGTLVAGVEAQIVSVDTL------KPLPPNQLGEIWVRGPNVTPG 405
           G   SG  G+     E ++V V  +      +P P    GEI VRGP +  G
Sbjct: 423 GDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPR---GEICVRGPIIFKG 471

Length = 651

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 67/258 (25%), Positives = 104/258 (40%), Gaps = 63/258 (24%)

Query: 171 FHDLIELSGSVTDIPDVSVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-- 227
           F  L E            V+     A + Y+SG+TG  KGV L+     AA+L   A   
Sbjct: 90  FATLGEDLYIALRPSANPVELPAGTAKITYTSGSTGQPKGVCLS-----AAALETVAQSL 144

Query: 228 QELVGELDHVV-LCVLPMFHVFGLSVIL------YDQLQKGNCVVSM----------GKF 270
            E +  L+    LC+LP      L+ +L      Y  L  G  V+ +             
Sbjct: 145 AEAIAILEPERHLCLLP------LATLLENIAGVYAPLLMGATVILVPLAELGLSGSSGL 198

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMED 328
           D    + A+ +++     +VP +++AL  A        +  SL+ V  G A +   L++ 
Sbjct: 199 DPAQFVAALSRWQPHSLILVPQLLMALVAAVEQGPLPPE--SLRFVAVGGARVSPSLLQR 256

Query: 329 CQK-NIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPL 387
            +   +P   +++ GYG++E  + +SL  P  G  R GS G                KPL
Sbjct: 257 ARALGLP---VYE-GYGLSECASVVSLNTP--GADRPGSVG----------------KPL 294

Query: 388 PPNQL-----GEIWVRGP 400
           P  Q+     GEI VRG 
Sbjct: 295 PHVQVSIANDGEILVRGS 312

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 74.1 bits (183), Expect = 3e-14
 Identities = 84/397 (21%), Positives = 146/397 (36%), Gaps = 89/397 (22%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +AL+    D SL++++      +++   R  G+   DVV +    S    +  L ++  
Sbjct: 3   AIALVY--GDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA     +P Y    L+  ++DS  ++++T         D +L  +    +  +      
Sbjct: 61  GAAYVPLDPAYPAERLAFMLEDSGARVLLT---------DESLAPLARADQLPLVILEEE 111

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK------- 215
                                 P  +V   D A ++Y+SG+TG  KGV + H+       
Sbjct: 112 LD--------------AEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVR 157

Query: 216 --NFIAASLMISAHQELVGELDHVVLCVLPM------FHVFGLSVILYDQLQKGNCVVSM 267
             N+IA    +              L + P+      F ++G        L  G  +V +
Sbjct: 158 NTNYIA----LDPDD--------RFLQLSPLSFDASTFEIWG-------ALLNGGRLVLI 198

Query: 268 GK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--DISSLK--LVGSGA-- 318
            K    D +   R I +  VTV W+   +      N LV +    ++ L+  LVG     
Sbjct: 199 DKETLLDPDRLARLIAEQGVTVLWLTAALF-----NQLVDEDPEALAGLRQLLVGGDVLS 253

Query: 319 APLGKELMEDCQKNIPGATIFQVGYGMTE-----TCAPISLENPLVGVRRSGSAGTLVAG 373
               + ++  C    PG  +   GYG TE     TC  I     L     S   G  +  
Sbjct: 254 PAHVRRVLAAC----PGLRLIN-GYGPTENTTFSTCHVI---TRLDEAADSIPIGRPIPN 305

Query: 374 VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
               I+  +  +P+P    GE++V G  +  G  Y+N
Sbjct: 306 TTVYILD-EEGQPVPIGVPGELYVGGDGLALG--YLN 339

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 99/371 (26%), Positives = 153/371 (41%), Gaps = 33/371 (8%)

Query: 43  KLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99
           KLALI   D   ++  +F   K    K ++ F+ LGI K D V++       F    L +
Sbjct: 33  KLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLAL 92

Query: 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE--LWDKVKDLNLPAVLLGSKDKVS 157
             IGAIA  A  + T  ++  +++ +  K+++ + E  + + + +    A   GS   + 
Sbjct: 93  HKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDE---AAPECGSPTLLV 149

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
             G       I  F   IE +    + P  + +    D   + ++SGTTG+ K V   H 
Sbjct: 150 LVGDPVPEGWI-DFDKEIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPKMV--EHD 206

Query: 216 NFIAASLMISA---HQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV--SMGKF 270
           +      +++A        G L   V        V+G    LY Q   G  V      KF
Sbjct: 207 HTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGK---LYGQWIAGAAVFVYDYDKF 263

Query: 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330
           D +  L  IEKY VT +   P I   L K  L  K+D+SSL+   +   PL  E+     
Sbjct: 264 DPKNLLEKIEKYGVTTFCAPPTIYRFLIKEDL-SKYDLSSLRYCTTAGEPLNPEVFNTF- 321

Query: 331 KNIPGATIFQVGYGMTETCAPI-SLEN--PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPL 387
           K   G  + + G+G TET   I +     P     + GS G    G +  I+  D  K  
Sbjct: 322 KEKTGIKLME-GFGQTETTLTIATFPWMEP-----KPGSMGKPSPGYDIDIIDPDG-KSC 374

Query: 388 PPNQLGEIWVR 398
              + GEI +R
Sbjct: 375 EVGEEGEIVIR 385

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 73.8 bits (181), Expect = 5e-14
 Identities = 69/299 (23%), Positives = 134/299 (44%), Gaps = 28/299 (9%)

Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           +   D SL++S+    V ++++  + +G+ K D V+I+ P  +  PI  L    IGA+ S
Sbjct: 114 EPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHS 173

Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGL------ 161
                ++   L++++ D  PK+VIT   +    K +NL  ++  + D+ + +G+      
Sbjct: 174 VVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICL 233

Query: 162 -------ISRSS------KIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                  + R        + V + D++      T      V   D   LLY+SG+TG  K
Sbjct: 234 TYENQLAMKREDTKWQEGRDVWWQDVV--PNYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 291

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM- 267
           GV+ T   ++  +     +       D V  C      + G S + Y  +  G  V+   
Sbjct: 292 GVLHTTGGYMVYTATTFKYAFDYKPTD-VYWCTADCGWITGHSYVTYGPMLNGATVLVFE 350

Query: 268 GKFDIEMALRA---IEKYRVTVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAPL 321
           G  +   + R    ++KY+VT+++  P ++ +L ++    V +    SL+++GS   P+
Sbjct: 351 GAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPI 409

Length = 666

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 72.7 bits (179), Expect = 8e-14
 Identities = 82/372 (22%), Positives = 144/372 (38%), Gaps = 79/372 (21%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
           + ++S+    V +++     LG+ K D V I+ P      +  L +  IGAIA      +
Sbjct: 7   TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGF 66

Query: 114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHD 173
               ++ +++D+  K++IT                         + G + R         
Sbjct: 67  GPDAVATRLQDAEAKVLIT-------------------------ADGFLRR--------- 92

Query: 174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE 233
                G   D+ D      D A ++Y+SGTTG  KG + TH  F   +         +  
Sbjct: 93  -----GKRVDLKD------DPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKP 141

Query: 234 LDHVVLCVLPM-----------FHVFGLSVILYDQLQKGNCVVSMGKFDIEMA---LRAI 279
            D  +L +  M             + G +++LY+           G  D        R +
Sbjct: 142 GD-RLLWITDMGWMMGPWLVLGGLLLGATIVLYE-----------GAPDYPDPDRLWRIV 189

Query: 280 EKYRVTVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 337
           E+++VT   + P +I AL  +  + V   D+SSL+++GS   P   E      + + G  
Sbjct: 190 ERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGR 249

Query: 338 IFQVGY-GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW 396
              + Y G TE    I    P+  ++     G    G++A +V  D  +P+   ++GE+ 
Sbjct: 250 APIINYSGGTEISGGILGNVPIRPIKPCSFNG-PSPGMDADVVDEDG-RPVRG-EVGELV 306

Query: 397 VRGPNV--TPGI 406
           VR P    T G 
Sbjct: 307 VRAPWPGMTRGF 318

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 100/427 (23%), Positives = 167/427 (39%), Gaps = 90/427 (21%)

Query: 50  DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA--- 106
           D   +L++ Q+     + + +F  LG+ +   V I   NS  + I  +G I  G IA   
Sbjct: 4   DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGI 63

Query: 107 -STANP-----VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSG 160
            +T +P     V   SE +  V D N K +  +  + D++  L    +      K     
Sbjct: 64  YTTNSPEACQYVAETSEANILVVD-NAKQLQKILAIQDQLPHLKA-IIQYREPLKEKEPN 121

Query: 161 LISRSSKIVSFHDLIELSGSVTD-----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
           L S       + + +EL  S+ D     I + S K      L+Y+SGTTG+ KGV+L+H 
Sbjct: 122 LYS-------WKEFMELGRSIPDEQLDAIIE-SQKPNQCCTLIYTSGTTGMPKGVMLSHD 173

Query: 216 NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV----SMGKFD 271
           N    +     H +L       V+  LP+ H+    + ++  +  G CV        K  
Sbjct: 174 NITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKGT 233

Query: 272 IEMALRAIEKYRVTVWWVVP--------PIILALAKNSLVRK----------FDISSLKL 313
           +   LR   + R T +  VP         +    AK++ +++           + +   +
Sbjct: 234 LVKTLR---EVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLM 290

Query: 314 VGSGAAPLGKEL--------------MEDCQKNIPGAT----------------IFQVGY 343
            G    P+   L              ++ CQK   GA                 I ++ Y
Sbjct: 291 GGESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIPIMEL-Y 349

Query: 344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT 403
           GM+ET  P ++ NP     R  S G  + G E +I + D       + +GEI + G +V 
Sbjct: 350 GMSETSGPHTVSNP--QNYRLLSCGKALPGCETKIHNPDA------DGIGEICIWGRHVF 401

Query: 404 PGIVYIN 410
            G  Y+N
Sbjct: 402 MG--YLN 406

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 71.3 bits (174), Expect = 2e-13
 Identities = 68/323 (21%), Positives = 111/323 (34%), Gaps = 21/323 (6%)

Query: 27  FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA 86
                   R                    ++++      ++    R LG+   D V    
Sbjct: 2   ERAAALFGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLG 56

Query: 87  PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP 146
            N       +  V  +GA+  TANP  +  E++  +  +  K+++  P L      L L 
Sbjct: 57  FNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL------LPLV 110

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
             + G    V          K    +   E      +   V V +  A  + Y++GTTG+
Sbjct: 111 EAIRGELKTVQHFV--VMDEKAPEGYLAYE-EALGEEADPVRVPERAACGMAYTTGTTGL 167

Query: 207 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266
            KGV+ +H+  +  SL  S           VVL V+PMFHV    +     L     V+ 
Sbjct: 168 PKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 227

Query: 267 MGKFDIEMALRAIEKYRVTVWWVVPPII--LALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
             + D    +   +   VT    VP +   LA    S   +       +VG  AAP    
Sbjct: 228 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAP---R 284

Query: 325 LMEDCQKNIPGATIFQVGYGMTE 347
            +    +        + GYG+TE
Sbjct: 285 SLIARFE--RMGVEVRQGYGLTE 305

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 70.8 bits (173), Expect = 7e-13
 Identities = 92/410 (22%), Positives = 154/410 (37%), Gaps = 57/410 (13%)

Query: 16   RPPLVLPSDPSFSMVHFLF-RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL 74
            R P   P  P    VH      +A     +A++    D+ LS+++  S   +++H  R  
Sbjct: 1994 RTPEAYPRGP---GVHQRIAEQAARAPEAIAVVF--GDQHLSYAELDSRANRLAHRLRAR 2048

Query: 75   GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134
            G+  +  V I A  S    +  L V+  G      +P Y    L+  ++DS   L++T  
Sbjct: 2049 GVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQR 2108

Query: 135  ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDA 194
             L +    L LPA            G+       +      E +      P V +   + 
Sbjct: 2109 HLLE---RLPLPA------------GVAR-----LPLDRDAEWADYPDTAPAVQLAGENL 2148

Query: 195  AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI- 253
            A ++Y+SG+TG+ KGV ++H   +A         EL    D    C L  F  F      
Sbjct: 2149 AYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYEL-SPAD----CEL-QFMSFSFDGAH 2202

Query: 254  --LYDQLQKGNCVVSMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDIS 309
               +  L  G  V+      +D E     +E++ VT+    P  +  LA+++       +
Sbjct: 2203 EQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGRPPA 2262

Query: 310  SLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISL-----ENPLVGVRRS 364
                   G A +    +    + +    +F  GYG TE      L     ++P       
Sbjct: 2263 VRVYCFGGEA-VPAASLRLAWEALRPVYLFN-GYGPTEAVVTPLLWKCRPQDP------C 2314

Query: 365  GSA----GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            G+A    G  +    A I+  D L  L P   GE+++ G  +  G  Y+N
Sbjct: 2315 GAAYVPIGRALGNRRAYILDAD-LNLLAPGMAGELYLGGEGLARG--YLN 2361

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 70.4 bits (172), Expect = 8e-13
 Identities = 87/387 (22%), Positives = 153/387 (39%), Gaps = 34/387 (8%)

Query: 25   PSFSMVHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
            P+   VH L    A      +A++    +E L++++      +++H+    G+  + +V 
Sbjct: 4548 PATRCVHQLVAERARMTPDAVAVVF--DEEKLTYAELNRRANRLAHALIARGVGPEVLVG 4605

Query: 84   IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
            I    S    +  L V+  G      +P Y    L+  ++DS   L++T   L  +   L
Sbjct: 4606 IAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQR---L 4662

Query: 144  NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
             +P  L        +S  + R           +  G     P V +   + A ++Y+SG+
Sbjct: 4663 PIPDGL--------ASLALDRDE---------DWEGFPAHDPAVRLHPDNLAYVIYTSGS 4705

Query: 204  TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
            TG  KGV ++H + +          EL  + D V+  +   F        LY  L  G  
Sbjct: 4706 TGRPKGVAVSHGSLVNHLHATGERYELTPD-DRVLQFMSFSFDGSHEG--LYHPLINGAS 4762

Query: 264  VV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            VV      +D E     I ++RVTV    P  +  LA+++  R  +  SL++   G   +
Sbjct: 4763 VVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHA-ERDGEPPSLRVYCFGGEAV 4821

Query: 322  GKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSA---GTLVAGVEAQI 378
             +   +   + +    +F  GYG TET   + L     G     +    GT +      +
Sbjct: 4822 AQASYDLAWRALKPVYLFN-GYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYV 4880

Query: 379  VSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            +    L PLP    GE+++ G  V  G
Sbjct: 4881 LD-GQLNPLPVGVAGELYLGGEGVARG 4906

Length = 5163

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 89/375 (23%), Positives = 153/375 (40%), Gaps = 29/375 (7%)

Query: 48  DADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
                E  +F+   +    ++H+    LGIT    V     N          V  +GA+ 
Sbjct: 32  GGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVF 91

Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLPAV----LLGSKDKVSSSG 160
           +  N      ++   +  +  ++++  P L +++ ++    P V     +G  D  S++ 
Sbjct: 92  NPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAA 151

Query: 161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA 220
            +    K+ S+  L++   +V D P++   +T AAA+ YS+GTTG  KGV+ +H++    
Sbjct: 152 HMPEGIKVYSYEALLDGRSTVYDWPEL--DETTAAAICYSTGTTGAPKGVVYSHRSLYLQ 209

Query: 221 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIE 280
           SL +     L        LC +P++HV    V L   +     V            + I 
Sbjct: 210 SLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIA 269

Query: 281 KYRVTVWWVVPPIILAL----AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA 336
                V   VP + + L     KN   R     SL+ +  G + +   L++  ++   G 
Sbjct: 270 TAMPRVAHGVPTLWIQLMVHYLKNPPERM----SLQEIYVGGSAVPPILIKAWEERY-GV 324

Query: 337 TIFQVGYGMTETCAPISLENPLVGVRRSGSA--------GTLVAGVEAQIVSVDTLKPLP 388
            +  V +GMTET    ++  P  GV  SG A        G   A +E +IV+   +    
Sbjct: 325 DVVHV-WGMTETSPVGTVARPPSGV--SGEARWAYRVSQGRFPASLEYRIVNDGQVMEST 381

Query: 389 PNQLGEIWVRGPNVT 403
               GEI VRG  VT
Sbjct: 382 DRNEGEIQVRGNWVT 396

Length = 576

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 16/242 (6%)

Query: 52  DESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110
            E++++++      +V+ +   H G+   D V +   N   F   +LG+  +G   +  N
Sbjct: 1   GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLN 60

Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK--- 167
                  L    +    ++++  PEL + V+++ LPA+    +        +S +S    
Sbjct: 61  TNIRSGSLLHCFRCCGARVLVADPELLEAVEEI-LPAL----RAMGVRVFYLSHTSPPEG 115

Query: 168 IVSFHDLI--ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 225
           ++S    +       V       V     A  +Y+SGTTG+ K   ++H   +  S M  
Sbjct: 116 VISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGM-- 173

Query: 226 AHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRV 284
               L G   D VV   LP++H  G  + +   +  G  +V   KF          KY V
Sbjct: 174 --LSLCGVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNV 231

Query: 285 TV 286
           TV
Sbjct: 232 TV 233

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 89/384 (23%), Positives = 145/384 (37%), Gaps = 63/384 (16%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY- 113
           +++++    V  ++ +   LG++ +  ++I + NSI   +  L  +  G   +  +P Y 
Sbjct: 26  VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85

Query: 114 TVSE----LSKQVKDSNPKLVIT--VPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK 167
            +S+    L        P  V           +  L L  V +     V+  G     + 
Sbjct: 86  LLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPV-----VAVRGAPGGPA- 139

Query: 168 IVSFHDLIELSGSVTDIPDVS-----VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
            ++F  L+    +      V      V     A  L++SG+TG+ K VI TH+   A   
Sbjct: 140 -IAFAALLATPPT----AAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQA 194

Query: 223 MISAHQELVGELDH---VVLCVLPMFHVFGLSVILYDQLQKGNCVV------SMGKFDIE 273
           MI    +    L     V++  LP  H FG +      L  G  +         G F+  
Sbjct: 195 MI---AQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNGGTLYIDDGKPVPGLFEET 251

Query: 274 MA-LRAIEKYRVTVWWVVPPIILALAK-----NSLVRKFDISSLKLVGSGAAPLGKELME 327
           +  LR +     TV++ VP     L        +L R+F    L+L+    A L +++ +
Sbjct: 252 LRNLREVSP---TVYFNVPKGFEMLVDALERDAALRRRF-FKRLRLLFYAGAALPQDVWD 307

Query: 328 DCQK---NIPGATI-FQVGYGMTETCAPISL-ENPLVGVRRSGSAGTLVAGVEAQIVSV- 381
             Q       G  I    G G TET    +    P     RSG  G    G E ++V   
Sbjct: 308 RLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTD---RSGVIGLPAPGTELKLVPNG 364

Query: 382 DTLKPLPPNQLGEIWVRGPNVTPG 405
             L         E+ V+GPNVTPG
Sbjct: 365 GKL---------EVRVKGPNVTPG 379

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 88/385 (22%), Positives = 151/385 (39%), Gaps = 40/385 (10%)

Query: 30  VHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           VH L    A  +  + AL     ++ LS+++      +++H     G+    +V I    
Sbjct: 514 VHQLIEAQARQHPERPAL--VFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVER 571

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           SI   +  L V+  G      +P Y    L+  + DS  +L++T   L   +  L +PA 
Sbjct: 572 SIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHL---LAQLPVPAG 628

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
           L                  +        L G     P+V++   + A ++Y+SG+TG  K
Sbjct: 629 L----------------RSLCLDEPADLLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPK 672

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
           GV ++H   +A  + + A +  +   D +++     F +      L+  L  G  +  + 
Sbjct: 673 GVAISHGA-LANYVCVIAERLQLAADDSMLMVSTFAFDLGVT--ELFGALASGATLHLLP 729

Query: 269 K---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
                D E     +    VTV  +VP  + AL + S V         LV  G A L  +L
Sbjct: 730 PDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVAL-PRPQRALVCGGEA-LQVDL 787

Query: 326 MEDCQKNIPGATIFQVGYGMTETCA-----PISLENPLVGVRRSGSAGTLVAGVEAQIVS 380
           +   +   PGA +    YG TET        +S E    G    G     +A +   I+ 
Sbjct: 788 LARVRALGPGARLINH-YGPTETTVGVSTYELSDEERDFGNVPIGQP---LANLGLYILD 843

Query: 381 VDTLKPLPPNQLGEIWVRGPNVTPG 405
              L P+P   +GE+++ G  +  G
Sbjct: 844 HY-LNPVPVGVVGELYIGGAGLARG 867

Length = 3956

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 88/385 (22%), Positives = 147/385 (38%), Gaps = 87/385 (22%)

Query: 30  VHFLFRNSASYS-SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           +H L    A  +   +A++  D  ESL++++      +++   R  G+  +  V +    
Sbjct: 1   LHELVEAQAERTPDAIAVVCGD--ESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRR 58

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S    +  L V+  GA     +P Y    L+  ++D+  +LV+T         D +  A 
Sbjct: 59  SPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLT---------DPDDLAY 109

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                                    +I  SGS                       TG  K
Sbjct: 110 -------------------------VIYTSGS-----------------------TGRPK 121

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSM 267
           GV + H+N  AA+L+  A      E    VL    +   F LSV  ++  L  G  VV  
Sbjct: 122 GVAIEHRN--AAALLQWAAAVFSAEELAGVLAATSI--CFDLSVFEIFVPLSTGGRVVLA 177

Query: 268 GKFDIEMALRAIE-KYRVTVWWVVPPIILALAK-NSLVRKFDISSLKLVGSGAAPLGKEL 325
              D  +AL  +  K  VT+   VP     L + ++L      SS++ V     PL +EL
Sbjct: 178 ---DNALALPDLPAKAEVTLINTVPSAARELLRHDALP-----SSVRTVNLAGEPLPQEL 229

Query: 326 MEDCQKNIPGATIFQVGYGMTE-----TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVS 380
           ++          ++ + YG +E     T A +       G  R+ S G  +AG +A ++ 
Sbjct: 230 VQRLYALPQVERVYNL-YGPSEDTTYSTYAEVEP-----GASRTPSIGRPLAGTQAYVLD 283

Query: 381 VDTLKPLPPNQLGEIWVRGPNVTPG 405
              L+P+P    GE+++ G  V  G
Sbjct: 284 -AHLQPVPVGVPGELYIGGAGVARG 307

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 98/391 (25%), Positives = 157/391 (40%), Gaps = 61/391 (15%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L++ Q    V + S    +L I+K D VLI+  N++   I  L    IGA        Y+
Sbjct: 93  LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152

Query: 115 VSELSKQVKDSNPKLVITVPE--LWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVS 170
           V  L  +++   PKL+IT     L D++     NL   +  S  K S+   + R+  I S
Sbjct: 153 VKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRND-ITS 211

Query: 171 FHDLIELSGSVTDIPD----------------------VSVKQTDAAALLYSSGTTGVSK 208
             DL ++  ++  IP+                      V V+ +    +LY+SGTTG SK
Sbjct: 212 ESDLKKI-ETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSK 270

Query: 209 GVILTHKNFIAA-----SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
            V+ ++   +         +I      V      +  V   FH F     LY  L  GN 
Sbjct: 271 AVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVS--FHGF-----LYGSLSLGNT 323

Query: 264 VVSMGKFDI------EMAL-RAIEKYRVTVWWVVPPIILALAKNS-----LVRKFDISSL 311
            V M +  I      E  L   IEK++VT    +P  I  L K       +  K+D+S+L
Sbjct: 324 FV-MFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNL 382

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET--CAPISLENPLVGVRRSGSAGT 369
           K +  G   + + + E  +  +   +    GYG TE          +  +    +G    
Sbjct: 383 KEIWCGGEVIEESIPEYIENKLKIKSS--RGYGQTEIGITYLYCYGHINIPYNATGVPSI 440

Query: 370 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 400
               ++  I+S D  K L  N++GE+  + P
Sbjct: 441 F---IKPSILSEDG-KELNVNEIGEVAFKLP 467

Length = 647

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 67.5 bits (166), Expect = 5e-12
 Identities = 74/338 (21%), Positives = 126/338 (37%), Gaps = 83/338 (24%)

Query: 33  LFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           L R+      + A+I    D     LS+++ +  V  ++ + R LG+   D V  + PN 
Sbjct: 92  LLRHRRD--DRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNI 149

Query: 90  IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKV 140
               +  L   ++GAI S+ +P + V  +  +     PK++I V              KV
Sbjct: 150 PETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKV 209

Query: 141 KDLN--LP----AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDA 194
            +L   LP     V++     +  +   +     + + D +               + + 
Sbjct: 210 AELRAALPSLEHVVVV---PYLGPAAAAAALPGALLWEDFLA---------PAEAAELEF 257

Query: 195 AAL--------LYSSGTTGVSK-------GVILTHKNFIAASLMISAHQEL-----VGEL 234
             +        LYSSGTTG+ K       G++L H             +EL     +G  
Sbjct: 258 EPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEH------------LKELGLHCDLGPG 305

Query: 235 DHV---VLCVLPM--FHVFGL----SVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT 285
           D       C   M  + V GL    +++LYD    G    S    D  +      +  VT
Sbjct: 306 DRFFWYTTCGWMMWNWLVSGLLVGATLVLYD----G----SPFYPDPNVLWDLAAEEGVT 357

Query: 286 VWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPL 321
           V+      + A  K  LV     D+S+L+ +GS  +PL
Sbjct: 358 VFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPL 395

Length = 655

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 92/369 (24%), Positives = 157/369 (42%), Gaps = 37/369 (10%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTV 115
           +++Q     +KVS +    GI   D V   A N+      + G++ IGAI  T NP    
Sbjct: 41  TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100

Query: 116 SELSKQVKDSNPKLVIT----VPELWDKVKDLNLPAV----LLGSKDKVSSSGLISRSSK 167
            +++  +  +  ++VIT    VP L +K+ D  LP+V    +L     +  + L      
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPIL-EKIAD-KLPSVERYVVLTDAAHMPQTTL----KN 154

Query: 168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH 227
            V++ + I    +  D    +  +  AA + Y+SGTTG  KGV+ +H++ +  +LM +  
Sbjct: 155 AVAYEEWIA--EADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNG 212

Query: 228 QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW 287
             L       +L V+P+FH     +           V+   K D       ++  +VT  
Sbjct: 213 DALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFT 272

Query: 288 WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTE 347
             VP + L L +        +  LK+V  G + + + +++  +    G  +    +GMTE
Sbjct: 273 AGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFEDM--GVEVRH-AWGMTE 329

Query: 348 TCAPI----SLENPLVGVRRSGSA--------GTLVAGVEAQIVSVDTLKPLP--PNQLG 393
             +P+    +L+ P   +   G A        G    GVE +I   D  K LP      G
Sbjct: 330 M-SPLGTLAALKPPFSKL--PGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFG 385

Query: 394 EIWVRGPNV 402
            + VRGP V
Sbjct: 386 RLKVRGPAV 394

Length = 542

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 66.8 bits (164), Expect = 7e-12
 Identities = 75/237 (31%), Positives = 108/237 (45%), Gaps = 50/237 (21%)

Query: 195 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL 254
           A  L++SG+TG+ K VI TH+   A   M++     + E   V++  LP  H FG +  L
Sbjct: 212 AKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNL 271

Query: 255 YDQLQKGNCVVSM---------GKFDIEM--ALRAIEKYRVTVWWVVPP----IILALAK 299
              L  G    ++         G FD E    LR I     TV++ VP     ++ AL +
Sbjct: 272 GIVLYNGG---TLYIDDGKPTPGGFD-ETLRNLREISP---TVYFNVPKGWEMLVPALER 324

Query: 300 N-SLVRKFDISSLKLVGSGAAPLGKEL--------MEDCQKNIPGATIFQVGYGMTETCA 350
           + +L R+F  S LKL+    A L +++           C + I   T    G GMTET A
Sbjct: 325 DAALRRRF-FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMT----GLGMTET-A 378

Query: 351 P--ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           P       PL    R+G+ G    G E ++V V         +L E+ V+GPNVTPG
Sbjct: 379 PSATFTTGPLS---RAGNIGLPAPGCEVKLVPVG-------GKL-EVRVKGPNVTPG 424

Length = 614

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 66.5 bits (163), Expect = 8e-12
 Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 62/235 (26%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D  LS+++F +   + +H+ R LG+ K DVV +   N   + + +L +  +GA+A+  N 
Sbjct: 1   DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
                 L+  +  S+ + VI  P                                     
Sbjct: 61  TQRGEVLAHCINVSDARAVIVDPAF----------------------------------- 85

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
              I  SG                       TTG+ K  I++H+ ++ A  +       +
Sbjct: 86  --YIYTSG-----------------------TTGLPKAAIMSHRRWLRAGAVFGGL--GL 118

Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 286
            + D V+   LP++H   L+V     L  G  +    KF        + +Y  T 
Sbjct: 119 LKPDDVLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATA 173

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 105/423 (24%), Positives = 164/423 (38%), Gaps = 85/423 (20%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+ A    +LALI    + D + + +F Q    V +++   R LG+ + D VLI+ P   
Sbjct: 61  RHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIA 120

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT----------VP--ELWD 138
                 L    IGAI S     +    L+ ++ D+ P L+++          VP   L D
Sbjct: 121 EAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLD 180

Query: 139 KVKDL---NLPAVLLGSKDKVSSSGLIS---RSSKIVSFHDLIELSGSVTDIPDVSVKQT 192
           +   L       VLL  +      GL      + + V +  L         +P   ++  
Sbjct: 181 EAIALAQHKPRHVLLVDR------GLAPMARVAGRDVDYATLRAQHLG-ARVPVEWLESN 233

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF---- 248
           + + +LY+SGTTG  KGV                 Q   G   + V     M  +F    
Sbjct: 234 EPSYILYTSGTTGKPKGV-----------------QRDTG--GYAVALATSMDTIFGGKA 274

Query: 249 --------------GLSVILYDQLQKGNC-VVSMG---KFDIEMALRAIEKYRVTVWWVV 290
                         G S I+Y  L  G   ++  G   + D  +  R +EKY+V   +  
Sbjct: 275 GETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSA 334

Query: 291 PPIILALAKN--SLVRKFDISSLKLVGSGAAPL----GKELMEDCQKNIPGATIFQVGYG 344
           P  I  L K   +L+RK D+SSL+ +     PL       + E     +         Y 
Sbjct: 335 PTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVID------NYW 388

Query: 345 MTETCAPISLENPLVGVR--RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 402
            TET  PI      V  R  R GS G  + G   ++++  T +P  PN+ G + + GP +
Sbjct: 389 QTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGP-L 447

Query: 403 TPG 405
            PG
Sbjct: 448 PPG 450

Length = 629

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 65.5 bits (161), Expect = 2e-11
 Identities = 102/407 (25%), Positives = 173/407 (42%), Gaps = 78/407 (19%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+  +   K+A+I    D      +++ +    V + +++ + LG+ K D V I+ P   
Sbjct: 75  RHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIP 134

Query: 91  HFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP 146
              +  L    IGA+ S    V    ++   L+ ++ D+  KLVIT  E     K + L 
Sbjct: 135 EAAVAMLACARIGAVHS----VVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLK 190

Query: 147 AVL---LGSKDKVSSSGLISRSSKIVS--------FHDLIELSGSVTDIPDVSVKQTDAA 195
           A +   L +   V    ++ R+   V         +H+L+   G+  +     +   D  
Sbjct: 191 ANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHELVA--GASDECEPEPMDAEDPL 248

Query: 196 ALLYSSGTTGVSKGVI------LTHKNFIAASLMISAHQELVGEL--DHVVLCVLPMFHV 247
            +LY+SG+TG  KGV+      L +    AA  M     + V +     V  C   +  V
Sbjct: 249 FILYTSGSTGKPKGVLHTTGGYLVY----AAMTM-----KYVFDYKDGDVYWCTADVGWV 299

Query: 248 FGLSVILYDQLQKGNCVV---------SMGKF-DIEMALRAIEKYRVTVWWVVPPIILAL 297
            G S I+Y  L  G   +           G+F ++      I+K++VT+++  P  I AL
Sbjct: 300 TGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEV------IDKHKVTIFYTAPTAIRAL 353

Query: 298 AK--NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA------TIFQVGYGMTET- 348
            K  +   +K+D+SSL+L+GS   P+  E  E   K + G       T +Q     TET 
Sbjct: 354 MKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQ-----TETG 408

Query: 349 CAPISLENPLVGVR--RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG 393
              I+   PL G    + GSA   + G++  +V  +   PL   + G
Sbjct: 409 GIMIT---PLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGG 451

Length = 637

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 61.6 bits (149), Expect = 3e-10
 Identities = 107/455 (23%), Positives = 182/455 (40%), Gaps = 75/455 (16%)

Query: 30  VHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89
           + FL R S  Y ++ ++I   +    ++ Q      +++ S   L ITK DVV + APN+
Sbjct: 17  ITFLKRASECYPNRTSIIYGKT--RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNT 74

Query: 90  -----IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD-- 142
                +HF      V   GA+ +  N     + ++  ++ + PK++          ++  
Sbjct: 75  PAMYEMHF-----AVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVL 129

Query: 143 ---------LNLPAVLLGSKD---KVSS-----SGLISRSSKIVSFHDLIELSGSVTDIP 185
                    LNLP + +   D   + SS       LI R     S      L   +  I 
Sbjct: 130 HLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPS------LVARMFRIQ 183

Query: 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 245
           D    + D  +L Y+SGTT   KGV+++H+    ++L      E+      V L  LPMF
Sbjct: 184 D----EHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEM--GTCPVYLWTLPMF 237

Query: 246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK 305
           H  G +   +    +G   V M         + IE + VT    VP +   L K + +  
Sbjct: 238 HCNGWT-FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL 296

Query: 306 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV--GYGMTETCAPISL--------- 354
              S    V +G +P    L++  Q+       FQV   YG+TE   P+           
Sbjct: 297 SPRSGPVHVLTGGSPPPAALVKKVQR-----LGFQVMHAYGLTEATGPVLFCEWQDEWNR 351

Query: 355 --ENPLVGVR-RSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPGIVYI 409
             EN  + ++ R G +   +A V+ +  + +T + +P +   +GEI ++G ++  G +  
Sbjct: 352 LPENQQMELKARQGVSILGLADVDVK--NKETQESVPRDGKTMGEIVIKGSSIMKGYLKN 409

Query: 410 NFFVFTLFL--W------GCEHTDSFIRGKDQQTD 436
                  F   W      G  H D  +  KD+  D
Sbjct: 410 PKATSEAFKHGWLNTGDVGVIHPDGHVEIKDRSKD 444

Length = 579

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 83/384 (21%), Positives = 136/384 (35%), Gaps = 76/384 (19%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           LS+++ +    +V++    LG+   D V    P +    +  L    +GAI     P++T
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYV---PLFT 57

Query: 115 ---VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
                 +  ++  S  K+V+T      K+ D                             
Sbjct: 58  AFGPKAIEYRLGHSGAKVVVTNAANRGKLDD----------------------------- 88

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
                                D  A +Y+SGTTG+ KGV +   N +AA     A+    
Sbjct: 89  ---------------------DLFAQMYTSGTTGLPKGVPVPL-NALAA---FYAYMRYA 123

Query: 232 GEL---DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVW 287
            +L   D       P +  +GL   +   L  G   V + G F  E     +E+  VT +
Sbjct: 124 IDLRDDDVFWNIADPGW-AYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNF 182

Query: 288 WVVPPIILAL-AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMT 346
              P     L A  +         L++  S   PL  E++   Q N+ G TI    YG T
Sbjct: 183 AGSPTAYRMLMAAGADAAARIKLKLRVASSAGEPLNPEVVRWFQANL-GVTIHD-HYGQT 240

Query: 347 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGI 406
           ET  P+   + L    R+GS G  + G    ++  D  +PL   + G++ +   +     
Sbjct: 241 ETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLD-DDGQPLADGEPGQLAIDVASSPL-- 297

Query: 407 VYINFFVFTLFLWGCEHTDSFIRG 430
                  F+ +    E T   I G
Sbjct: 298 -----LWFSGYWDDPEKTAELIAG 316

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 71/275 (25%), Positives = 117/275 (42%), Gaps = 85/275 (30%)

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV------LCVLP 243
           ++TD   ++Y+SGTTG  KGVILT++  IA  L       L+   D V          LP
Sbjct: 218 QKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLST---DHLLKVTDRVATEEDSYFSYLP 274

Query: 244 MFHVFGLSVILYDQLQKGNCV---VSMG--KFDIEMALRAIEKYRVTVWWVVPP------ 292
           + HV       YDQ+ +  C+    S+G  + DI   +  ++  + T++  VP       
Sbjct: 275 LAHV-------YDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIY 327

Query: 293 --IILALAKNSLVRK--FDIS-----------------------------------SLKL 313
             I+  ++   ++RK  FD +                                    ++L
Sbjct: 328 TGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRL 387

Query: 314 VGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCA----PISLENPLVGVRRSGSAGT 369
           + SGAAPL + + E+  +    + + Q GYG+TE+C      I+    +V     G+ G 
Sbjct: 388 LLSGAAPLPRHV-EEFLRVTSCSVLSQ-GYGLTESCGGCFTSIANVFSMV-----GTVGV 440

Query: 370 LVAGVEAQIVSV-----DTLKPLPPNQLGEIWVRG 399
            +  +EA++ SV     D L  +P    GEI +RG
Sbjct: 441 PMTTIEARLESVPEMGYDALSDVPR---GEICLRG 472

Length = 660

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 60.2 bits (146), Expect = 8e-10
 Identities = 62/249 (24%), Positives = 105/249 (42%), Gaps = 21/249 (8%)

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
           V  K  +  A+ ++SGTTG  K    +H +      +   +   +   D ++  +     
Sbjct: 169 VKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSD-IMWNMSDTGW 227

Query: 247 VFGLSVILYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR 304
           +      L+    +G CV    + +FD ++ L+ + KY +T +   P +   L +  L  
Sbjct: 228 IKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDLTS 287

Query: 305 KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET---CAPISLENPLVGV 361
            +   SL+   +G  PL  E++E   K   G  +++ GYG TET   CA     N     
Sbjct: 288 -YKFKSLRHCVTGGEPLNPEVLEQ-WKAQTGLDLYE-GYGQTETGLICA-----NFKGMK 339

Query: 362 RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC 421
            + GS G      + QI+  D    LPP   G+I +R     P      F +F+ ++   
Sbjct: 340 IKPGSMGKASPPYDVQIID-DNGNVLPPGTEGDIGIRVKPTRP------FCLFSCYVDNP 392

Query: 422 EHTDSFIRG 430
           E T + IRG
Sbjct: 393 EKTAATIRG 401

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 103/450 (22%), Positives = 168/450 (37%), Gaps = 106/450 (23%)

Query: 25  PSFSMVHFLFRNSASYSSKLA--LID--ADSD---ESLSFSQFKSIVIKVSHSFRHLGIT 77
           P+ ++V  + R +     KLA   +D   + D     L++SQF +    V    +   +T
Sbjct: 19  PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ--VT 76

Query: 78  KK-DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE------LSKQVKDSNPKLV 130
           K  D V I AP ++ + I F G +  G IA    P++  +E      L   + D  P  +
Sbjct: 77  KPGDRVAILAPQNLDYLIAFFGALYAGRIAV---PLFDPAEPGHVGRLHAVLDDCTPSAI 133

Query: 131 ITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD-- 186
           +T  +  + V+      PA                   ++++          V  +PD  
Sbjct: 134 LTTTDSAEGVRKFFRARPA---------------KERPRVIA----------VDAVPDEV 168

Query: 187 ------VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGELDHVVL 239
                     +   A L Y+SG+T +  GV +TH N     L +I A   L G+     +
Sbjct: 169 GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDA---LEGQEGDRGV 225

Query: 240 CVLPMFHVFGLSVILYDQLQKGNCVVSM---------GKFDIEMALRAIEKYRVTVWWVV 290
             LP FH  GL  +L   L  G+ +  M         G++  E+A           +   
Sbjct: 226 SWLPFFHDMGLITVLLPALL-GHYITFMSPAAFVRRPGRWIRELA--RKPGGTGGTFSAA 282

Query: 291 PPIILALAKNSLVRK-----FDISSLKLVGSGAAPLGKELMEDCQK-----NIPGATIFQ 340
           P      A    + K      D+S++K + +G+ P+    M    +      +P   I +
Sbjct: 283 PNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAI-K 341

Query: 341 VGYGMTE-----TCAPISLENPLVGVRRSG--------------------SAGTLVAGVE 375
             YGM E     +  P+  E  ++ V R                      SAG +     
Sbjct: 342 PSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEW 401

Query: 376 AQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           A IV  +T   LP  Q+GEIW+ G N+  G
Sbjct: 402 AVIVDPETASELPDGQIGEIWLHGNNIGTG 431

Length = 631

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 99/410 (24%), Positives = 159/410 (38%), Gaps = 79/410 (19%)

Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS-- 89
           FL R +  Y  + A+I  D     ++++  +   +++ +    GI + D V +  PN   
Sbjct: 23  FLERAAEVYPDRPAVIHGD--RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPA 80

Query: 90  ---IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP 146
               HF     GV   GA+ +T N     + ++  ++    K++I   E  +  ++    
Sbjct: 81  MVEAHF-----GVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVARE---- 131

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS--VTDI----------PDVSVKQT-- 192
                      +  L+     +V   D  E  G   +  +          PD +      
Sbjct: 132 -----------ALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDPDFAWTLPAD 180

Query: 193 --DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVF 248
             DA AL Y+SGTTG  KGV+  H+    A L   ++  L   +    V L  LPMFH  
Sbjct: 181 EWDAIALNYTSGTTGNPKGVVYHHR---GAYLNALSNI-LAWGMPKHPVYLWTLPMFHCN 236

Query: 249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILAL---AKNSLVRK 305
           G         + G   V + K D ++    I ++ VT  +   PI+L+    A       
Sbjct: 237 GWCFPWTVAARAGT-NVCLRKVDPKLIFDLIREHGVT-HYCGAPIVLSALINAPAEWRAG 294

Query: 306 FDISSLKLVGSGAAPLGK--ELMEDCQKNIPGATIFQVGYGMTETCAPISL--------E 355
            D     +V  GAAP       ME+      G  +  V YG+TET  P ++         
Sbjct: 295 IDHPVHAMVA-GAAPPAAVIAKMEEI-----GFDLTHV-YGLTETYGPATVCAWQPEWDA 347

Query: 356 NPL----VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRG 399
            PL        R G    L  GV   ++  DT++P+P +   +GEI  RG
Sbjct: 348 LPLDERAQLKARQGVRYPLQEGV--TVLDPDTMQPVPADGETIGEIMFRG 395

Length = 545

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 87/388 (22%), Positives = 154/388 (39%), Gaps = 38/388 (9%)

Query: 25   PSFSMVHFLF-RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
            PS  +VH L     A      AL+  D  + LS+++      +++H    +G+    +V 
Sbjct: 3092 PSERLVHQLIEAQVARTPEAPALVFGD--QQLSYAELNRRANRLAHRLIAIGVGPDVLVG 3149

Query: 84   IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
            +    S+   +  L V+  G      +P Y    L+  ++DS  KL++T   L ++    
Sbjct: 3150 VAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQ---- 3205

Query: 144  NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
             LPA                     ++  D ++L+G   + P   V   + A ++Y+SG+
Sbjct: 3206 -LPAP---------------AGDTALTL-DRLDLNGYSENNPSTRVMGENLAYVIYTSGS 3248

Query: 204  TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGN 262
            TG  KGV + H    A +  +    E   ELD     +L M   F  +       L  G 
Sbjct: 3249 TGKPKGVGVRHG---ALANHLCWIAEAY-ELDANDRVLLFMSFSFDGAQERFLWTLICGG 3304

Query: 263  CVVSMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAP 320
            C+V      +D E   +AI  +R+++    P  +   A+++     D +SL +   G   
Sbjct: 3305 CLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGA--DCASLDIYVFGGEA 3362

Query: 321  LGKELMEDCQKNIPGATIFQVGYGMTETC-APISLENPLVGVRRSGSA--GTLVAGVEAQ 377
            +     E  ++ +    +   GYG TE        +     V  +  A  G  VAG    
Sbjct: 3363 VPPAAFEQVKRKLKPRGLTN-GYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIY 3421

Query: 378  IVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            ++    L P+P    GE+++ G  +  G
Sbjct: 3422 VLD-GQLNPVPVGVAGELYIGGVGLARG 3448

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 59.2 bits (143), Expect = 3e-09
 Identities = 80/387 (20%), Positives = 151/387 (39%), Gaps = 36/387 (9%)

Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           P    VH LF      + + A   A  +E+L +++      +++H+    G+    +V +
Sbjct: 508 PLQRGVHRLFEEQVERTPE-APALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGV 566

Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK-DL 143
               SI   +  L ++  G      +P Y    L+  ++DS  +L+++   L  K+    
Sbjct: 567 AMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAA 626

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
            +  + L   D+ ++                  L G   + P   +   + A ++Y+SG+
Sbjct: 627 GVQVLDL---DRPAA-----------------WLEGYSEENPGTELNPENLAYVIYTSGS 666

Query: 204 TGVSKGVILTHKNFIA-ASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILYDQLQKG 261
           TG  KG    H+        M  A+   VG+    VL   P    F +SV   +  L  G
Sbjct: 667 TGKPKGAGNRHRALSNRLCWMQQAYGLGVGD---TVLQKTPF--SFDVSVWEFFWPLMSG 721

Query: 262 NCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             +V        D    +  I +  V     VP ++ A  ++  V     +SL+ +    
Sbjct: 722 ARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSG 779

Query: 319 APLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQI 378
             L  +  E     +P A ++ + YG TE    ++    +     S   G  +A +   I
Sbjct: 780 EALPADAQEQVFAKLPQAGLYNL-YGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYI 838

Query: 379 VSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           +  + L+P+P   LGE+++ G  +  G
Sbjct: 839 LDAN-LEPVPVGVLGELYLAGRGLARG 864

Length = 5163

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 58.3 bits (142), Expect = 3e-09
 Identities = 83/384 (21%), Positives = 139/384 (36%), Gaps = 110/384 (28%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +AL D D   +LS+++      +++   R LG+   D V +    S       L ++  
Sbjct: 3   AIALRDDD--RTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           GA     +P Y    L   ++D+                    PA+LL            
Sbjct: 61  GAAYVPLDPSYPAERLQYMLEDAE-------------------PALLL------------ 89

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
                              TD PD      D A ++Y+SG+TG  KGV ++H+     + 
Sbjct: 90  -------------------TD-PD------DLAYVIYTSGSTGKPKGVEVSHRAL--VNF 121

Query: 223 MISAHQEL-VGELDHVV----LCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK---FDIE 273
           ++S  +   +G  D ++    +        F +SV+ L   L  G  VV        D E
Sbjct: 122 LLSMARRPGLGASDRLLAVTTIS-------FDISVLELLLPLLSGATVVIASAETVRDPE 174

Query: 274 MALRAIEKYRVTVWWVVPP---IILA--LAKNSLVRKFDISSLKLVGSGAAP--LGKELM 326
              R I   R+T+    P    ++LA        +         L G  A P  L + L+
Sbjct: 175 RLARLIADERITIMQATPATWRMLLAAGWRGRESLT-------ALCGGEALPRDLAERLL 227

Query: 327 EDCQK--NIPG---ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV 381
               +  N+ G    TI+     +T    P+++  P+        A T V  ++      
Sbjct: 228 STGAELWNMYGPTETTIWSTCARVTAADGPVTIGRPI--------ANTQVYVLDED---- 275

Query: 382 DTLKPLPPNQLGEIWVRGPNVTPG 405
             L+P+PP   GE+++ G  V  G
Sbjct: 276 --LQPVPPGVPGELYIGGDGVARG 297

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 44/235 (18%)

Query: 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
           V  +  DAA +L++SG+ G  KGV+ +HK+ +A    I    +     +   +  LP+FH
Sbjct: 360 VKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTP--NDRFMSALPLFH 417

Query: 247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--- 303
            FGL+V L+  L  G  V     F     L     YR     +VP   L   +N  V   
Sbjct: 418 SFGLTVGLFTPLLTGAEV-----FLYPSPLH----YR-----IVPE--LVYDRNCTVLFG 461

Query: 304 ------------RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAP 351
                         +D + L+ V +GA  L +   +  Q    G  I + GYG+TE CAP
Sbjct: 462 TSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILE-GYGVTE-CAP 518

Query: 352 -ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            +S+  P+    + G+ G ++ G++A+++SV  ++     Q G + ++GPN+  G
Sbjct: 519 VVSINVPMAA--KPGTVGRILPGMDARLLSVPGIE-----QGGRLQLKGPNIMNG 566

Length = 718

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 58.3 bits (141), Expect = 6e-09
 Identities = 96/425 (22%), Positives = 166/425 (39%), Gaps = 71/425 (16%)

Query: 28  SMVHFLFRNSASYSSKLAL--IDADSDES--LSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
           ++V  L R +A    +LAL  +  D  E   LS+         ++ + +         VL
Sbjct: 10  TLVQALQRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASFGDRAVL 69

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSE-----LSKQVKDSNPKLVITVPELWD 138
           +F P+   +   F G +  G IA  A P  +        L   + D+ P+L++TV +L D
Sbjct: 70  LF-PSGPDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRD 128

Query: 139 KVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL 198
            +  +                   + + +++    L           + +++  D A L 
Sbjct: 129 SLLQME--------------ELAAANAPELLCVDTL--DPALAEAWQEPALQPDDIAFLQ 172

Query: 199 YSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL 258
           Y+SG+T + KGV ++H N +A   +I     +    D V++  LP++H  GL   L   +
Sbjct: 173 YTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMGLIGGLLQPI 232

Query: 259 QKG-NCVVSMGKFDIEMALR---AIEKYRVTVWWVVPPIILALA----KNSLVRKFDISS 310
             G  CV+    + +E  LR   AI +Y  T+    P     L       S + + D+S 
Sbjct: 233 FSGVPCVLMSPAYFLERPLRWLEAISEYGGTISG-GPDFAYRLCSERVSESALERLDLSR 291

Query: 311 LKLVGSGAAPLGKELMEDCQKNIPG----ATIFQVGYGMTETCAPISLENPLVGVRR--- 363
            ++  SG+ P+ ++ +E   +           F   YG+ E    +S      G RR   
Sbjct: 292 WRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFASYGLAEATLFVS------GGRRGQG 345

Query: 364 -------------------SGSA----GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 400
                              +GS     G    G    IV   +L+ L  N++GEIW  GP
Sbjct: 346 IPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGP 405

Query: 401 NVTPG 405
           ++  G
Sbjct: 406 SIAHG 410

Length = 4334

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 34/219 (15%)

Query: 47  IDADSD-----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101
           ID + D     E+L++SQ     + V+   R  G T  D  +I AP  + + + FLG + 
Sbjct: 23  IDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHGSTG-DRAVILAPQGLEYIVAFLGALQ 81

Query: 102 IGAIA---STANPVYTVSE--LSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV 156
            G IA   S   P     +  +S  ++D++P +V+T   + D V +             V
Sbjct: 82  AGLIAVPLSV--PQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEY------------V 127

Query: 157 SSSGLISRSSKIVSFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK 215
           +       +  ++   DL++L S   +D     +     A L Y+SG+T    GV+++H+
Sbjct: 128 APQPG-QSAPPVIEV-DLLDLDSPRGSDARPRDL--PSTAYLQYTSGSTRTPAGVMVSHR 183

Query: 216 NFIA--ASLMIS--AHQELVGELDHVVLCVLPMFHVFGL 250
           N IA    LM         V   D  V+  LP +H  GL
Sbjct: 184 NVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGL 222

Length = 578

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 57/237 (24%), Positives = 86/237 (36%), Gaps = 43/237 (18%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           D   +F +      KV++ F+  G    DVV +F  N + F   +LG+  IG   +  N 
Sbjct: 1   DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60

Query: 112 VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF 171
              +  L   +  S  K +I            NL   LL      + S     S   V+F
Sbjct: 61  NLRLESLLHCITVSKAKALIF-----------NLLDPLL------TQSSTEPPSQDDVNF 103

Query: 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN--FIAASLMISAHQE 229
            D +                      +Y+SGTTG+ K  ++ H     IAA     A+  
Sbjct: 104 RDKL--------------------FYIYTSGTTGLPKAAVIVHSRYYRIAA----GAYYA 139

Query: 230 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTV 286
                + VV   LP++H  G  + +   L  G+ VV   KF          KY  T+
Sbjct: 140 FGMRPEDVVYDCLPLYHSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTI 196

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 74/284 (26%), Positives = 124/284 (43%), Gaps = 25/284 (8%)

Query: 45  ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104
           A+I A++ E +S+ Q       ++      G+   DVV + + NS    +     +  G 
Sbjct: 15  AVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGL 74

Query: 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISR 164
             +  N   T  E    V DS  ++++    L      +     L     ++S  G I  
Sbjct: 75  YITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPL-----RLSFGGEID- 128

Query: 165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI--LTHKNFIAAS- 221
                SF   +  +G     P ++ +Q   A +LYSSGTTG  KG+   L  ++  A   
Sbjct: 129 --GFGSFEAALAGAG-----PRLT-EQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGD 180

Query: 222 --LMISAHQELVGELDHVVLCVLPMFHVFGLS-VILYDQLQKGNCVVSMGKFDIEMALRA 278
             + I+     + E D +     P++H   L    +   L  G  VV   +FD +  L  
Sbjct: 181 PIVAIARAFYDISESD-IYYSSAPIYHAAPLRWCSMVHAL--GGTVVLAKRFDAQATLGH 237

Query: 279 IEKYRVTVWWVVPPIILALAK-NSLVR-KFDISSLKLVGSGAAP 320
           +E+YR+TV  +VP + + L K ++ VR ++D+SSL+ V   AAP
Sbjct: 238 VERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAP 281

Length = 501

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 29/216 (13%)

Query: 53  ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS----IHFPICF---LGVIAI--- 102
           E +++ Q    V   +     LG  K++ V IFA       I    CF   + V+ I   
Sbjct: 105 EWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYAS 164

Query: 103 ---GAIASTANP--VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS 157
               A+  + N   V TV   SKQ+K    KL I +    + VK +    + +  +   S
Sbjct: 165 LGEEALCHSLNETEVTTVICDSKQLK----KL-IDISSQLETVKRV----IYMDDEGVDS 215

Query: 158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
            S L   S+  VS    +E  G    +        D A ++Y+SG+TG+ KGV++TH N 
Sbjct: 216 DSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNI 275

Query: 218 IAASLMISAHQELVGELDH--VVLCVLPMFHVFGLS 251
           +A    ++    +V +L    V L  LP+ H+  L+
Sbjct: 276 VAT---VAGVMTVVPKLGKNDVYLAYLPLAHILELA 308

Length = 696

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 80/343 (23%), Positives = 131/343 (38%), Gaps = 39/343 (11%)

Query: 65  IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 124
            ++    R+ G++  D VL+  P+S       L  +A G +A  ANP     + +   ++
Sbjct: 41  ARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARN 100

Query: 125 SNPKLVITVPELWDKVKDLNL--PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182
           + P LV+T   L D+ +   +   A L+    +V+                   + G   
Sbjct: 101 TEPALVVTSDALRDRFQPSRVAEAAELMSEAARVAPG-------------GYEPMGG--- 144

Query: 183 DIPDVSVKQTDAAAL-LYSSGTTGVSKGVILTHKN-FIAASLMISAHQELVGELDHVVLC 240
                     DA A   Y+SGTTG  K  I  H +       M      L  E     LC
Sbjct: 145 ----------DALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPE--DTGLC 192

Query: 241 VLPMFHVFGLSVILYDQLQKG-NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
              M+  +GL   ++  L  G + V++      E A     ++  +V + VP     +  
Sbjct: 193 SARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVID 252

Query: 300 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLV 359
           +     F   SL+ V S    L   L E   +   G  I   G G TE     +  +  V
Sbjct: 253 SCSPDSF--RSLRCVVSAGEALELGLAERLMEFFGGIPILD-GIGSTEVGQ--TFVSNRV 307

Query: 360 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNV 402
              R G+ G ++   E ++V+ D     P  + G++WVRGP +
Sbjct: 308 DEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVE-GDLWVRGPAI 349

Length = 705

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 69/309 (22%), Positives = 116/309 (37%), Gaps = 61/309 (19%)

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           G +    N     + L+  ++ ++ +L++T  E    +  L+LP V +          L 
Sbjct: 76  GYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRV----------LD 125

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN--FIAA 220
             +    ++ +L+  +G++T   +V     D   L+++SGTTG  K V  +H    F   
Sbjct: 126 VDTP---AYAELVAAAGALTPHREVDAM--DPFMLIFTSGTTGAPKAVRCSHGRLAFAGR 180

Query: 221 SLMISAHQELVGELDHVVLCVLPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMAL 276
           +L       L    D V    +P+FH    + G +      +  G  V    KF     L
Sbjct: 181 ALT--ERFGLTR--DDVCYVSMPLFHSNAVMAGWAPA----VASGAAVALPAKFSASGFL 232

Query: 277 RAIEKYRVTVW-WVVPPI--ILAL------AKNSLVRKFDISSLKLVGSGAAPLGKELME 327
             + +Y  T + +V  P+  ILA       A N L   F        G+ A+P      E
Sbjct: 233 DDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAF--------GNEASPRDIA--E 282

Query: 328 DCQKNIPGATIFQVGYGMTETCAPISLEN--PLVGVRRSGSAGTLVAGVEAQIVSVDTLK 385
             ++   G  +   GYG +E    +  E   P       GS G    GV   I + +TL 
Sbjct: 283 FSRRF--GCQVED-GYGSSEGAVIVVREPGTP------PGSIGRGAPGVA--IYNPETLT 331

Query: 386 PLPPNQLGE 394
                +   
Sbjct: 332 ECAVARFDA 340

Length = 540

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 79/346 (22%), Positives = 128/346 (36%), Gaps = 66/346 (19%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
            S++Q      +V++  R  G+ + D VL+  PN        L  I +GA+   A  + T
Sbjct: 1   YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60

Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDL 174
            ++L                   D+       A+                          
Sbjct: 61  PADLR------------------DRFSRGKPKAI-------------------------- 76

Query: 175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL 234
                 V D      +  D   L ++SGTTG+ K V+ TH ++    L       L    
Sbjct: 77  ------VAD----ETRADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGD 126

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPP 292
            H+ +   P +     S   +     G  V  +   +FD    L A+EK+ VT  +  PP
Sbjct: 127 IHLNISS-PGWAKHAWSS-FFAPWNAGATVFGINYPRFDARRYLGALEKFGVTT-FCAPP 183

Query: 293 IILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPI 352
            +  +     + ++D+   + V +G  PL  E++E  +K   G TI + GYG TET A I
Sbjct: 184 TVWRMFIQQDLAQYDVRLREAVSAG-EPLNPEVIERVKKAW-GLTI-RDGYGQTETTAMI 240

Query: 353 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR 398
              N      + GS G  + G   ++V +D      P   GEI + 
Sbjct: 241 G--NSPGQKVKPGSMGRPLPGY--RVVLLDDEGKEIPVTEGEIALD 282

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 54.4 bits (131), Expect = 6e-08
 Identities = 90/399 (22%), Positives = 160/399 (40%), Gaps = 57/399 (14%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
            ++  +   + +Y   +A       + L++ Q K    +++   +   + KK  ++++  
Sbjct: 1   KLIEAIQAFAETYPQTIAY--RYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGH 58

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD-SNPKLVITVPELWDKVKDLNLP 146
              H  + FLG I  G  A         SE  + + + + P+LVI   EL      ++  
Sbjct: 59  MEPHMLVAFLGSIKSGH-AYIPVDTSIPSERIEMIIEAAGPELVIHTAEL-----SIDAV 112

Query: 147 AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGV 206
                         +I+     +S  +  E SG      D +VK  D   ++Y+SG+TG 
Sbjct: 113 GT-----------QIIT-----LSALEQAETSGGPVSF-DHAVKGDDNYYIIYTSGSTGN 155

Query: 207 SKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVV 265
            KGV ++H N ++ +  + A   L        L   P    F LSV+ LY  L  G  + 
Sbjct: 156 PKGVQISHDNLVSFTNWMLADFPLSEGK--QFLNQAP--FSFDLSVMDLYPCLASGGTLH 211

Query: 266 SMGKF---DIEMALRAIEKYRVTVWWVVPPII-LALAKNSLVRK-------FDISSLKLV 314
            + K    + ++    + K  + VW   P  + + L   +  ++       F     +L 
Sbjct: 212 CLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELP 271

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTE-TCAPISLE--NPLVGVRRSGSAGTLV 371
              A    K L+E      P ATI+   YG TE T A  S++    ++        G   
Sbjct: 272 VKTA----KALLE----RFPKATIYNT-YGPTEATVAVTSVKITQEILDQYPRLPIGFAK 322

Query: 372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
             +   I+  +  +PLP  + GEI + GP+V+ G  Y+N
Sbjct: 323 PDMNLFIMDEEG-EPLPEGEKGEIVIVGPSVSKG--YLN 358

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
            D A +L++SG+ G  KGV+L+H+N +A    ++A  +   E    V   LP+FH FGL
Sbjct: 793 DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPE--DKVFNALPVFHSFGL 849

Length = 1140

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 53.7 bits (130), Expect = 8e-08
 Identities = 88/387 (22%), Positives = 143/387 (36%), Gaps = 89/387 (22%)

Query: 25  PSFSMVHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
             FS   + +R+ A      +AL    +DE L++ Q  + + +++  F   G+ +   V 
Sbjct: 2   MIFSD--WPWRHWAQVRPQAIALRL--NDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVA 57

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           +   NS    + +L ++  GA     NP      L + +        +    L  +    
Sbjct: 58  LRGKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALV---LEGENTFS 114

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
            L ++ L   +   +          V++                       A +  +SG+
Sbjct: 115 ALTSLHLQLVEGAHA----------VAWQP------------------QRLATMTLTSGS 146

Query: 204 TGVSKGVILTHKNFIAA-----SLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL 258
           TG+ K  + T +  +A+     SLM    Q      D  +L  LP+FHV G   I++  L
Sbjct: 147 TGLPKAAVHTAQAHLASAEGVLSLMPFTAQ------DSWLLS-LPLFHVSGQG-IVWRWL 198

Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  +V   K  +E AL        T   +VP  +  L  N         SLK V  G 
Sbjct: 199 YAGATLVVRDKQPLEQALAG-----CTHASLVPTQLWRLLDNRSEP----LSLKAVLLGG 249

Query: 319 APLGKELMEDCQKNIPGATIFQVGYGMTET----CAPISLENPLVGVRRSGSA--GTLVA 372
           A +  EL E  ++   G   +  GYG+TE     CA           R  G A  G+ + 
Sbjct: 250 AAIPVELTEQAEQQ--GIRCW-CGYGLTEMASTVCA----------KRADGLAGVGSPLP 296

Query: 373 GVEAQIVSVDTLKPLPPNQLGEIWVRG 399
           G E ++V             GEIW+RG
Sbjct: 297 GREVKLVD------------GEIWLRG 311

Length = 458

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 76/382 (19%), Positives = 138/382 (36%), Gaps = 34/382 (8%)

Query: 25   PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
            P    VH LF      +   A+  A  ++ LS+++      +++H     G+    +V +
Sbjct: 3054 PLERGVHRLFEEQVERTPD-AVALAFGEQRLSYAELNRRANRLAHRLIERGVGPDVLVGV 3112

Query: 85   FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
                S+   +  L ++  G      +P Y    L+  ++DS  +L+++   L        
Sbjct: 3113 AVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL-------- 3164

Query: 145  LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT 204
                 L     V     + R  +  +  +           P +     + A ++Y+SG+T
Sbjct: 3165 ----RLPLAQGVQVL-DLDRGDENYAEAN-----------PAIRTMPENLAYVIYTSGST 3208

Query: 205  GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
            G  KGV + H         +     L G  D V+      F VF     L+  L  G  V
Sbjct: 3209 GKPKGVGIRHSALSNHLCWMQQAYGL-GVGDRVLQFTTFSFDVFVEE--LFWPLMSGARV 3265

Query: 265  VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN-SLVRKFDISSLKLVGSGAAPLGK 323
            V  G  D       +E        V+      L            +SLK +  G   L  
Sbjct: 3266 VLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPA 3325

Query: 324  ELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT 383
            +L    Q+   G  ++ + YG TE    ++    +   + +   G  +A     I+   +
Sbjct: 3326 DLQ---QQVFAGLPLYNL-YGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILD-GS 3380

Query: 384  LKPLPPNQLGEIWVRGPNVTPG 405
            L+P+P   LGE+++ G  +  G
Sbjct: 3381 LEPVPVGALGELYLGGEGLARG 3402

Length = 5163

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 15/164 (9%)

Query: 200 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           SSGTTG       T K     A  L  S +   V + D V           GL   L+  
Sbjct: 98  SSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLG--LHYG 155

Query: 258 LQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLKLV 314
            ++ G  V+ +   + E  L  ++ ++ TV    P  +L LA+ +     D    SLK  
Sbjct: 156 AERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKG 215

Query: 315 GSGAAPLGKELMEDCQKNIP---GATIFQVGYGMTETCAPISLE 355
             GA P  +E+    +K I    G   F + YG+TE   P + E
Sbjct: 216 IFGAEPWSEEM----RKVIENRFGCKAFDI-YGLTEGFGPGAGE 254

Length = 438

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 35/254 (13%)

Query: 49  ADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST 108
           AD+    S+ + +  V+ +++  R  G+   D V +  P S+   +    ++  GA    
Sbjct: 478 ADARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLP 537

Query: 109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKI 168
            +  Y    L   ++D+ P L+IT  +   +  D+     L  +           + S+ 
Sbjct: 538 LDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYNAPLAPQGAAPLQLSQ- 596

Query: 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ 228
                           P         A ++++SG+TG  KGV++     +   L +  H 
Sbjct: 597 ----------------PH------HTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY 634

Query: 229 ELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFD-----IEMALRAIEKY 282
            L    D VVL   P    F +SV   +     G  +V M + +     + M  +   +Y
Sbjct: 635 PLTA--DDVVLQKTPC--SFDVSVWEFFWPFIAGAKLV-MAEPEAHRDPLAMQ-QFFAEY 688

Query: 283 RVTVWWVVPPIILA 296
            VT    VP ++ A
Sbjct: 689 GVTTTHFVPSMLAA 702

Length = 1296

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 74/371 (19%), Positives = 147/371 (39%), Gaps = 41/371 (11%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           K+A+ +  +D  L++  +   V KV++       +K   + I   N I F   F G    
Sbjct: 17  KIAIKE--NDRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFAGAAMA 73

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLI 162
           G      +  +   EL +++  SN  +++T     + + D     + +   D+     +I
Sbjct: 74  GWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEI---DEWK--RMI 128

Query: 163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
            +     +          + ++      Q     + ++SG+TG  K  +   ++++  S 
Sbjct: 129 EKYLPTYAP---------IENV------QNAPFYMGFTSGSTGKPKAFLRAQQSWLH-SF 172

Query: 223 MISAHQELVGELDHVVLCVLPMFHVFGLSVILY---DQLQKGNCVVSMGKFDIEMALRAI 279
             + H   +   D V L    + H    S+ LY     L  G  V  M KF     L  +
Sbjct: 173 DCNVHDFHMKREDSV-LIAGTLVH----SLFLYGAISTLYVGQTVHLMRKFIPNQVLDKL 227

Query: 280 EKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339
           E   ++V + VP ++ +L K     +   + +K++ SGA     E  E  +   P A ++
Sbjct: 228 ETENISVMYTVPTMLESLYK---ENRVIENKMKIISSGAK-WEAEAKEKIKNIFPYAKLY 283

Query: 340 QVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 399
           +  YG +E  + ++        RR  S G     V+ +I +    + +   ++G ++V+ 
Sbjct: 284 EF-YGASEL-SFVTALVDEESERRPNSVGRPFHNVQVRICNEAG-EEVQKGEIGTVYVKS 340

Query: 400 PNVTPGIVYIN 410
           P    G  YI 
Sbjct: 341 PQFFMG--YII 349

Length = 487

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 11/205 (5%)

Query: 197 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD 256
           +L +SGTTG  KG             + +         +   + V PMFH +G S ++  
Sbjct: 201 ILLTSGTTGTPKGA--RRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVL- 257

Query: 257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKNSLVRKFDISSLKL 313
                  +V+  +FD E  L  I+++R T   VVP +   I+ L       ++   SL+ 
Sbjct: 258 AASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR-NRYSGRSLRF 316

Query: 314 VGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAG 373
             +  + +  +++        G  I+   Y  TE    I+   P        +AG    G
Sbjct: 317 AAASGSRMRPDVVIAFMDQF-GDVIYN-NYNATEA-GMIATATPADLRAAPDTAGRPAEG 373

Query: 374 VEAQIVSVDTLKPLPPNQLGEIWVR 398
            E +I+  D  + +P  ++G I+VR
Sbjct: 374 TEIRILDQD-FREVPTGEVGTIFVR 397

Length = 537

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 93/428 (21%), Positives = 177/428 (41%), Gaps = 105/428 (24%)

Query: 56  SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF----------------LGV 99
           ++ +   IVIK+ +S R +G+  +    I+  NS  + I                  LG 
Sbjct: 81  TYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGA 140

Query: 100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDKVSS 158
            A+  I S +       E  K       +L  T P   + +K + +   V    K++  +
Sbjct: 141 GAVEFIISHSEVSIVFVEEKKI-----SELFKTCPNSTEYMKTVVSFGGVSREQKEEAET 195

Query: 159 SGLISRSSKIVSFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
            GL+     I ++ + ++L  G   D+P    K++D   ++Y+SGTTG  KGV++++++ 
Sbjct: 196 FGLV-----IYAWDEFLKLGEGKQYDLP--IKKKSDICTIMYTSGTTGDPKGVMISNESI 248

Query: 218 IAAS-----LMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG---- 268
           +        L+ SA+  L   +  V L  LP+ H+F   +          C +  G    
Sbjct: 249 VTLIAGVIRLLKSANAAL--TVKDVYLSYLPLAHIFDRVI--------EECFIQHGAAIG 298

Query: 269 --KFDIEMALRAIEKYRVTVWWVVPPII--------LALAKNSLVRK--FDIS------- 309
             + D+++ +  + + + T++  VP ++          L+    ++K  FD +       
Sbjct: 299 FWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGN 358

Query: 310 ----------------------------SLKLVGSGAAPLGKELMEDCQKNIPGATIFQV 341
                                       +++++ SGAAPL   + E   + +    + Q 
Sbjct: 359 MKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQ- 416

Query: 342 GYGMTETCAP--ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK--PLPPNQLGEIWV 397
           GYG+TE+CA   +SL + L  +   G+ G  V  V+ ++ SV  ++   L     GEI +
Sbjct: 417 GYGLTESCAGTFVSLPDELDML---GTVGPPVPNVDIRLESVPEMEYDALASTPRGEICI 473

Query: 398 RGPNVTPG 405
           RG  +  G
Sbjct: 474 RGKTLFSG 481

Length = 666

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 87/384 (22%), Positives = 153/384 (39%), Gaps = 59/384 (15%)

Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA-- 101
           +AL   D   +L + +  + V  ++   R   +++   VL+ + N    P  +L V+A  
Sbjct: 31  IALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNG---PETYLSVLACA 87

Query: 102 -IGAIASTAN---PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVS 157
            +GAIA  A+   P+  +    +          IT P            A L+    K++
Sbjct: 88  KLGAIAVMADGNLPIAAIERFCQ----------ITDPA-----------AALVAPGSKMA 126

Query: 158 SSGLISRSSKIVSFH-DLIELSGSVTDIPDVSVKQT-------DAAALLYSSGTTGVSKG 209
           SS +      I     D+  ++       D +           D  A++++SGTTG  K 
Sbjct: 127 SSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKA 186

Query: 210 VILTHKNFIAASLMISAHQELVGELDHVV----LCVLPMFHVFGLSVILYDQLQKGNCVV 265
           V+L ++ F A   ++    E +  +  VV       LP  H+ GL  IL   +  G CV 
Sbjct: 187 VLLANRTFFAVPDILQK--EGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVT 244

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
             G  +    L  +    V    +VP ++  L          + SL+LVG G +   + +
Sbjct: 245 --GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGS---RAI 299

Query: 326 MEDCQ-KNIPGATIFQVGYGMTET-CAPISL--ENPLVGVRRSGSAGTLVAGVEAQIVSV 381
             D +     G    QV YG++ET C  + L  ++  +    +G+ G    GV+  + + 
Sbjct: 300 AADVRFIEATGVRTAQV-YGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAAT 358

Query: 382 DTLKPLPPN-----QLGEIWVRGP 400
           D + P  P        G +W++ P
Sbjct: 359 DGIGPTAPGAGPSASFGTLWIKSP 382

Length = 540

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 88/393 (22%), Positives = 152/393 (38%), Gaps = 91/393 (23%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
            E L++ Q K     ++     L +  K  +++F   S      FLG +  G  A     
Sbjct: 25  GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG-HAYIPVD 83

Query: 112 VYTVSELSKQVKD-SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS 170
           V + +E  + + + + P L+I   EL      L +  +                   +++
Sbjct: 84  VSSPAERIEMIIEVAKPSLIIATEEL-----PLEILGI------------------PVIT 120

Query: 171 FHDLIELSGSVTDI-PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA-ASLMISAHQ 228
             +L ++  +      D +VK  D   ++++SGTTG  KGV ++H N ++  + M+    
Sbjct: 121 LDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFA 180

Query: 229 ELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALR------AIEK 281
             + E           +  F LSV+ LY  L  G  +V++ K   +M          + +
Sbjct: 181 --LPE--GPQFLNQAPYS-FDLSVMDLYPTLASGGTLVALPK---DMTANFKQLFETLPQ 232

Query: 282 YRVTVWWVVPPII-LALAKNSLVRKFD---ISSLK--------LVGSGAAPLGKELMEDC 329
             + VW   P    + L    L   F+   + +L         L    A    K+L+E  
Sbjct: 233 LPINVWVSTPSFADMCL----LDPSFNEEHLPNLTHFLFCGEELPHKTA----KKLLE-- 282

Query: 330 QKNIPGATIFQVGYGMTE-TCAPISLE---------NPL-VGVRRSGSAGTLVAGVEAQI 378
               P ATI+   YG TE T A  S+E           L +G  +  S           +
Sbjct: 283 --RFPSATIYNT-YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDS----------PL 329

Query: 379 VSVD-TLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           + +D     LP  + GEI + GP+V+ G  Y+N
Sbjct: 330 LIIDEEGTKLPDGEQGEIVISGPSVSKG--YLN 360

Length = 503

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 45/211 (21%), Positives = 95/211 (45%), Gaps = 18/211 (8%)

Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY- 113
           +++++    ++        LG+TK   V I+      +     G+ +   +A+T   VY 
Sbjct: 122 ITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAAT---VYA 178

Query: 114 TVSE--LSKQVKDSNPKLVI----TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK 167
            + E  L+  ++++  K ++     VP L   +K   +P   +   D + +S + +   +
Sbjct: 179 NLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS-VDTEGCR 237

Query: 168 IVSFHDLIELSGSVTD--IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS 225
           +V++ D++    S       ++     D A ++Y+SGTTG  KGV+ TH + + A ++  
Sbjct: 238 LVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGS-LTAGILAL 296

Query: 226 AHQ--ELVGEL--DHVVLCVLPMFHVFGLSV 252
             +  +L+G    D      LP+ H+    V
Sbjct: 297 EDRLNDLIGPPEEDETYCSYLPLAHIMEFGV 327

Length = 700

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 56/217 (25%), Positives = 82/217 (37%), Gaps = 30/217 (13%)

Query: 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV 241
            + P       D   L+++SGT+G  K V  TH+   +A +M++    L    D V    
Sbjct: 142 AEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGP--DDVCYVS 199

Query: 242 LPMFH----VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVW-WVVPPIILA 296
           +P+FH    + G +V     L  G  +    KF     L  + +Y  T   +V  P+   
Sbjct: 200 MPLFHSNAVMAGWAV----ALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYV 255

Query: 297 LAKNSLVRKFDISSLKLV-GSGAAPLGKELME---DCQKNIPGATIFQVGYGMTETCAPI 352
           LA        D + L++V G+  AP           C            G+G TE    I
Sbjct: 256 LATPERPDDAD-NPLRIVYGNEGAPGDIARFARRFGCV--------VVDGFGSTEGGVAI 306

Query: 353 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP 389
           +   P       G+ G L  GV   IV  DT    PP
Sbjct: 307 TRT-P---DTPPGALGPLPPGV--AIVDPDTGTECPP 337

Length = 529

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.9 bits (122), Expect = 9e-07
 Identities = 93/367 (25%), Positives = 150/367 (40%), Gaps = 57/367 (15%)

Query: 66  KVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTANPVYTVSELSKQVKD 124
           +++ +   LG+   D V   A N   H    + GV   GA+  T NP     +++  V  
Sbjct: 51  QLAQALAALGVEPGDRVGTLAWNGYRHLEAYY-GVSGSGAVCHTINPRLFPEQIAYIVNH 109

Query: 125 SNPKLV---ITVPELWDKVKDLNLPAV----LLGSKDKVSSSGLISRSSKIVSFHDLIEL 177
           +  + V   +T   L D +     P V     +     + +      S+ ++ +  L+  
Sbjct: 110 AEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHLPAG-----STPLLCYETLVGA 163

Query: 178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN-----FIAA---SLMISAHQE 229
                D P     Q  A++L Y+SGTTG  KG + +H++     + AA   ++ +SA   
Sbjct: 164 QDGDYDWPRFDENQ--ASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARD- 220

Query: 230 LVGELDHVVLCVLPMFHV--FGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTV 286
                   VL V+PMFHV  +GL    Y     G  +V  G   D +     IE  RVT 
Sbjct: 221 -------AVLPVVPMFHVNAWGLP---YSAPLTGAKLVLPGPDLDGKSLYELIEAERVTF 270

Query: 287 WWVVPPIILALAKNSLVRKFDISSLK--LVGSGAAPLGKELMEDCQKNIPGATIFQVGYG 344
              VP + L L  +        S+L+  ++G  A P     M    ++  G  +    +G
Sbjct: 271 SAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACP---PAMIRTFEDEYGVEVIH-AWG 326

Query: 345 MTE------TCAPIS--LENPLVGVRRS-GSAGTLVAGVEAQIVSVDTLKPLPPN--QLG 393
           MTE       C       + PL   R+     G ++ GV+ +IV  D  + LP +    G
Sbjct: 327 MTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDG-RELPWDGKAFG 385

Query: 394 EIWVRGP 400
           ++ VRGP
Sbjct: 386 DLQVRGP 392

Length = 539

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 89/403 (22%), Positives = 162/403 (40%), Gaps = 56/403 (13%)

Query: 25   PSFSMVHFLF-RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
            P   +VH L    +A+    +AL+  +  + L++ +      +++H    LG+  + +V 
Sbjct: 1571 PLARLVHQLIEDQAAATPEAVALVFGE--QELTYGELNRRANRLAHRLIALGVGPEVLVG 1628

Query: 84   IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
            I    S+   +  L ++  G      +P Y    L+  ++DS  +L++T   L  ++   
Sbjct: 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP 1688

Query: 144  N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
            + L +++L  +D                      L G     P V++   + A ++Y+SG
Sbjct: 1689 DGLRSLVLDQEDD--------------------WLEGYSDSNPAVNLAPQNLAYVIYTSG 1728

Query: 203  TTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSV----ILYDQ 257
            +TG  KG    H   +     + A QE        VVL     F  F   V    + +  
Sbjct: 1729 STGRPKGAGNRHGALVN---RLCATQEAYQLSAADVVL----QFTSFAFDVSVWELFWPL 1781

Query: 258  LQKGNCVVSM--GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
            +     V++      D E  ++ IE+ +VT    VP ++  L +     +  +S  ++V 
Sbjct: 1782 INGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVC 1841

Query: 316  SGAAPLGKELMEDCQKNIPGATIFQVGYGMTET--------CAPISLENPLVGVRRSGSA 367
             G A L  E +    + +P   +F   YG TET        C    LE      R S   
Sbjct: 1842 GGEA-LEVEALRPWLERLPDTGLFN-LYGPTETAVDVTHWTCRRKDLEG-----RDSVPI 1894

Query: 368  GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            G  +A +   I+   +L P+P    GE+++ G  +  G  Y+N
Sbjct: 1895 GQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARG--YLN 1934

Length = 3956

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 72/358 (20%), Positives = 136/358 (37%), Gaps = 60/358 (16%)

Query: 45  ALIDADSDES---LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA 101
           AL+  D       +++++ +  V  ++ + R LG+   D V  + PN     +  L   +
Sbjct: 102 ALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATAS 161

Query: 102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVKDL--NLPAV-- 148
           +GAI S+ +P +    +  + +   PKL+ TV             DKV ++   LP +  
Sbjct: 162 VGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRA 221

Query: 149 -----LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV--SVKQTDAAALLYSS 201
                 LG ++          + KI    DL + + +      V   +       +L+SS
Sbjct: 222 VVHIPYLGPRETE--------APKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSS 273

Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELV-------GE-LDHVVLCVLPMFH------V 247
           GTTG+ K ++ +     A   ++   +E         G+ L +       M++       
Sbjct: 274 GTTGLPKCIVHS-----AGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWNWLVSGLA 328

Query: 248 FGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRK 305
            G +++LYD         S G     +     E+   T++      ++A  K  +   R 
Sbjct: 329 TGATLVLYDG--------SPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPART 380

Query: 306 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRR 363
            D+S+L+ V S  +PL  +        I          G T+ C+  +  NP + V  
Sbjct: 381 HDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHI 438

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 88/416 (21%), Positives = 140/416 (33%), Gaps = 81/416 (19%)

Query: 40  YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV 99
           Y  +  L +A     L +   ++     +     LG+   D V + A     F   F   
Sbjct: 40  YDRRGQLEEA-----LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFAC 94

Query: 100 IAIGAI-ASTANPV-------YTVSELSKQVKDSNPKLVITVPELWDKVKD--LNLPAVL 149
              G +      P+       Y +++L   +  + P  +IT  EL   V +     P + 
Sbjct: 95  QYAGLVPVPLPLPMGFGGRESY-IAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLH 153

Query: 150 LGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKG 209
           + S                        L  +   +P  +    D A L YSSG+T   +G
Sbjct: 154 VLSHA------------------WFKALPEADVALPRPT--PDDIAYLQYSSGSTRFPRG 193

Query: 210 VILTHKNFIAASLMISAHQELVGELDHVVLCV--LPMFHVFGLSVILYDQLQKGNCVVSM 267
           VI+TH+  +A    IS     V   D    CV  LP +H  GL   L   +     V  +
Sbjct: 194 VIITHRALMANLRAISHDGLKVRPGDR---CVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250

Query: 268 GKFDIEMA----LRAIEKYRVTVWWVVPPIILAL----AKNSLVRKFDISSLKLVGSGAA 319
              D        L  I + R T+    PP    L      +  + + D+S  ++ G GA 
Sbjct: 251 PTRDFARRPLQWLDLISRNRGTI-SYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGAD 309

Query: 320 PLGKELMEDCQKNIPGA----TIFQVGYGMTETCAPISLENPLVGVR----------RSG 365
            +  +++    +    A      F   YG+ E    +S      G+             G
Sbjct: 310 MIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQG 369

Query: 366 SA----------------GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            A                G  + G E +I +     PLP   +G I VRGP++  G
Sbjct: 370 KAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAG-MPLPERVVGHICVRGPSLMSG 424

Length = 579

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 73/324 (22%), Positives = 127/324 (39%), Gaps = 34/324 (10%)

Query: 29   MVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
            +   L   +     ++AL+      SL +++  +   +++H  R  G+     V I A  
Sbjct: 1133 LPELLNEQARQTPERIALVWDG--GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAER 1190

Query: 89   SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
            S    +  L ++  G      +P Y    L+  + DS  +L++T   L ++     LP  
Sbjct: 1191 SPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLER-----LPQA 1245

Query: 149  LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                 + VS+  L           D + L    +  P + +   + A ++Y+SG+TG  K
Sbjct: 1246 -----EGVSAIAL-----------DSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPK 1289

Query: 209  GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSM 267
            GV  TH         + A   L      V++   P+   F +SV   +  L  G  +V  
Sbjct: 1290 GVGNTHAALAERLQWMQATYALDD--SDVLMQKAPI--SFDVSVWECFWPLITGCRLVLA 1345

Query: 268  G---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
            G     D +     +++Y VT    VPP++       L      +SL+ + SG   L  E
Sbjct: 1346 GPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAA--ACTSLRRLFSGGEALPAE 1403

Query: 325  LMEDCQKNIPGATIFQVGYGMTET 348
            L     + +P   +    YG TET
Sbjct: 1404 LRNRVLQRLPQVQLHN-RYGPTET 1426

Length = 4334

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 47.6 bits (114), Expect = 7e-06
 Identities = 25/76 (32%), Positives = 40/76 (52%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
           SL+F +    V +++     LG+ + D V + A NSI F + FL ++ +GA+    NP  
Sbjct: 1   SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60

Query: 114 TVSELSKQVKDSNPKL 129
              EL +Q+ D  P L
Sbjct: 61  PQEELQQQLADLQPDL 76

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 48.4 bits (116), Expect = 7e-06
 Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 11/101 (10%)

Query: 306 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSG 365
           +D  SL+ V +GA  + KE          G  I + GYG+TET   I+L  P+    ++G
Sbjct: 904 YDFRSLRYVFAGAEKV-KEETRQTWMEKFGIRILE-GYGVTETAPVIALNTPMHN--KAG 959

Query: 366 SAGTLVAGVEAQIVSVDTLKPLPP-NQLGEIWVRGPNVTPG 405
           + G L+ G+E +      L+P+P  ++ G ++VRGPNV  G
Sbjct: 960 TVGRLLPGIEYR------LEPVPGIDEGGRLFVRGPNVMLG 994

Length = 1140

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 67/263 (25%), Positives = 102/263 (38%), Gaps = 61/263 (23%)

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE---LDHVVLCVLPMFH 246
           K  D   ++Y+SGT+G  KGV+LTH+        +    E   +    D V L  LP+ H
Sbjct: 218 KPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAH 277

Query: 247 VF-----------GLSV--------ILYDQLQ--KGNCVVSMGK-FD-----IEMALRAI 279
           +            G SV         L D L   K   +  + + F+     I+ AL+ +
Sbjct: 278 ILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQEL 337

Query: 280 EK---------YRVTVWWV--------VPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
                      Y+  + W+          P+   LA   +  K     L+L+ SG APL 
Sbjct: 338 NPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLG-GRLRLLISGGAPLS 396

Query: 323 KELMEDCQKNIPGATIFQVGYGMTETCAPISLENP----LVGVRRSGSAGTLVAGVEAQI 378
            E+ E  +  +        GYG+TET  P +L  P    ++     G+ G      E ++
Sbjct: 397 TEIEEFLR--VTSCAFVVQGYGLTETLGPTTLGFPDEMCML-----GTVGAPAVYNELRL 449

Query: 379 VSVDTL--KPLPPNQLGEIWVRG 399
             V  +   PL     GEI VRG
Sbjct: 450 EEVPEMGYDPLGEPPRGEICVRG 472

Length = 660

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 61/269 (22%)

Query: 19  LVLPSDPSFSMVHFLFRNSASYSSKLA--LIDADSDES-----LSFSQFKSIVIKVSHSF 71
           + LP  P  +++  + RN A+    +A   +D     +     L+++Q    +  V    
Sbjct: 28  IALP--PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARL 85

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT------VSELSKQVKDS 125
           + +     D V I AP  I +   F   I  G IA    P++          L   ++D+
Sbjct: 86  QQV-AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAV---PLFAPELPGHAERLDTALRDA 141

Query: 126 NPKLVITVPELWDKVKDL--NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
            P +V+T     + V+    NLP +               R  +++          ++  
Sbjct: 142 EPTVVLTTTAAAEAVEGFLRNLPRL---------------RRPRVI----------AIDA 176

Query: 184 IPD--------VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL-MISAHQELVGEL 234
           IPD        V +   D + L Y+SG+T    GV +TH+      + MI +    +  L
Sbjct: 177 IPDSAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILS----IDLL 232

Query: 235 DHVVLCV--LPMFHVFGLSVILYDQLQKG 261
           D     V  LP++H  GLS+I +  +  G
Sbjct: 233 DRNTHGVSWLPLYHDMGLSMIGFPAVYGG 261

Length = 612

>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 20/192 (10%)

Query: 54  SLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY 113
            ++ S+ +S V +V+++   LG  K D + I  P ++H  I +L +I  G +  +    +
Sbjct: 208 RMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSF 267

Query: 114 TVSELSKQVKDSNPKLVIT----------VPELWDKVKDLNLP-AVLLGSKDKVSSSGLI 162
             SE++ ++K S  K + T          +P L+ +V +   P A++L +  K     L 
Sbjct: 268 APSEIATRLKISKAKAIFTQDVIVRGGKSIP-LYSRVVEAKAPKAIVLPADGKSVRVKL- 325

Query: 163 SRSSKIVSFHDLIELSGSVTDIPD--VSVKQTDAAA--LLYSSGTTGVSKGVILTHKNFI 218
                 +S+ D +  +  +   PD   +V+Q   A   +L+SSGTTG  K +  T    +
Sbjct: 326 --REGDMSWDDFLARANGL-RRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPL 382

Query: 219 AASLMISAHQEL 230
            A+    AH ++
Sbjct: 383 RAAADAWAHLDI 394

Length = 728

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 75/332 (22%), Positives = 119/332 (35%), Gaps = 57/332 (17%)

Query: 41  SSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI 100
           S  +A+I  +     S+ +       ++ S R  GI   D  L+   N   F I F  ++
Sbjct: 37  SDAIAVICGE--RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALL 94

Query: 101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSG 160
            +G     A   +  SEL+       P L+I          D      L    D +++  
Sbjct: 95  KLGVAPVNALFSHQRSELNAYASQIEPALLIA---------DRQHA--LFSDDDFLNTLV 143

Query: 161 LISRSSKIVSFH---------DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
               S ++V            D I       D         + A    S G+TG  K + 
Sbjct: 144 AEHSSLRVVLLLNDDGEHSLDDAINHPA--EDFTATPSPADEVAFFQLSGGSTGTPKLIP 201

Query: 212 LTHKNF---IAASLMI---SAHQELVGELDHVVLCVLPMFHVFGLSV-----ILYDQLQK 260
            TH ++   +  S+ I   +             LC LP  H + +S      +       
Sbjct: 202 RTHNDYYYSVRRSVEICGFTPQTRY--------LCALPAAHNYPMSSPGALGVFL----A 249

Query: 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPP-IILALAKNSLV-RKFDISSLKLVGSGA 318
           G  VV        +    IEK++V V  +VPP + L L   +    +  ++SLKL+  G 
Sbjct: 250 GGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGG 309

Query: 319 APLGKELMEDCQKNIP---GATIFQVGYGMTE 347
           A L + L     + IP   G  + QV +GM E
Sbjct: 310 ARLSETL----ARRIPAELGCQLQQV-FGMAE 336

Length = 536

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 53  ESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP 111
           ++ ++S+   +V++ +H       +   D V I   NS  F   +L + +IGA+ +  N 
Sbjct: 4   KTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINY 63

Query: 112 VYTVSELSKQVKDSNPKLVITVPE 135
             +   L   +K S  K VI  P+
Sbjct: 64  NLSGDPLIHCLKISGAKFVIVDPD 87

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 74/275 (26%), Positives = 114/275 (41%), Gaps = 47/275 (17%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGL 250
            + AL Y+SGTT   KGV+L H+    A LM +    L+  ++   V L  LPMFH  G 
Sbjct: 196 QSIALGYTSGTTASPKGVVLHHR---GAYLM-ALSNALIWGMNEGAVYLWTLPMFHCNGW 251

Query: 251 SVILYDQLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
               +       C  +  + +   +    AI  Y VT  +   P++L    N+   +  +
Sbjct: 252 C---FTWTLAALCGTNICLRQVTAKAIYSAIANYGVT-HFCAAPVVLNTIVNAPKSETIL 307

Query: 309 SSLKLVG---SGAAPLGKELMEDCQKNIPGATIFQVG--YGMTETCAPISL--------- 354
              ++V    +GAAP    L    +K       F+V   YG++ET  P ++         
Sbjct: 308 PLPRVVHVMTAGAAPPPSVLFAMSEKG------FRVTHTYGLSETYGPSTVCAWKPEWDS 361

Query: 355 ENPLVGVRRSGSAGTLVAGVEA-QIVSVDTLKPLPPN--QLGEIWVRGPNVTPGIVYIN- 410
             P    R +   G    G+E   +V   T+KP+P +   +GEI +RG  V  G  Y+  
Sbjct: 362 LPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKG--YLKN 419

Query: 411 ------FFVFTLFLWG---CEHTDSFIRGKDQQTD 436
                  F    F  G    +H D +I  KD+  D
Sbjct: 420 PKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKD 454

Length = 567

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 83/406 (20%), Positives = 147/406 (36%), Gaps = 58/406 (14%)

Query: 15  LRPPLVLPSDPS--FSMVHFLFRNSASYSSKLALIDA---------DSDESLSFSQFKSI 63
           +R  L+ P  P     ++    R   +  + LA+  A         D D +LS+ + +  
Sbjct: 10  VRSGLLNPPSPRAVLRLLREASRGGTNPYTLLAVTAARWPGRTAIIDDDGALSYRELQRA 69

Query: 64  VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK 123
              ++      G+     V +   N   F      V  +GA     +  +    L+  ++
Sbjct: 70  TESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALR 129

Query: 124 DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
             +   V+   E  +++   +  AV +       +     R +        +   G +  
Sbjct: 130 AHHISTVVADNEFAERIAGAD-DAVAVIDPATAGAEESGGRPA--------VAAPGRI-- 178

Query: 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP 243
                        +L +SGTTG  KGV    +   A  + ++            +   +P
Sbjct: 179 -------------VLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMP 225

Query: 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPI---ILALAKN 300
           MFH  GL +++   +  G  V++   FD E AL     +R   +  VP +   IL L   
Sbjct: 226 MFHGLGLGMLML-TIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPR 284

Query: 301 SLVRKFDISSLKLVGSGA----APLGKELME---DCQKNIPGATIFQVGYGMTETCAPIS 353
              R   +  L++V S        LG+  M+   D   N  G+T  +VG G   T  P  
Sbjct: 285 VRARN-PLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGST--EVGIGALAT--PAD 339

Query: 354 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 399
           L +         + G  VAG   +I+  +  +P+ P   G I+V G
Sbjct: 340 LRDA------PETVGKPVAGCPVRILDRNN-RPVGPRVTGRIFVGG 378

Length = 516

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 22/109 (20%)

Query: 301 SLVRKFDISSLKLVGSGAAPLG---KELMEDCQKNIPGATIFQVGYGMTET--CAPISLE 355
           S  R      ++ + SG  PL    +E +     N+    + Q G+G+TET  C  I   
Sbjct: 420 SAPRAVLGGRVRAMLSGGGPLSAATQEFV-----NVVFGMVIQ-GWGLTETVCCGGIQ-- 471

Query: 356 NPLVGVRRSGSAGTLVAGVEAQIVSVD----TLKPLPPNQLGEIWVRGP 400
               G     + G L+ GVE +++  +    T  P P    GEI +RGP
Sbjct: 472 --RTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPR---GEILLRGP 515

Length = 700

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +A++  D  +SL++ +      +++H  R  G+   D+V I    S    +  L V+  
Sbjct: 3   AVAVVFGD--QSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKA 60

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135
           GA     +P Y    L+  ++DS  KL++T P+
Sbjct: 61  GAAYVPLDPAYPAERLAYMLEDSGAKLLLTDPD 93

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 50/165 (30%), Positives = 71/165 (43%), Gaps = 20/165 (12%)

Query: 193 DAAALLYSSGTTGVSKGVILTHKNFIAASLMISA---HQELVGELDHVVLCVLPMFHVFG 249
           D A ++ +SGTTG  KG +LT     AA+L  SA   H  L G      L  LP  H+ G
Sbjct: 36  DVALVVATSGTTGTPKGAMLT-----AAALTASADATHDRLGGPGQW--LLALPAHHIAG 88

Query: 250 LSVILYDQLQKGNCV---VSMGKFDIEMALRAIEKYRV-TVWWVVPPIILALAKNSLVRK 305
           L V++   +     V   VS G FD     RA+ +      +  + P+ LA A +     
Sbjct: 89  LQVLVRSVIAGSEPVELDVSAG-FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAAT 147

Query: 306 FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG-YGMTETC 349
             ++ L  V  G  P    +++        A I  V  YGM+ET 
Sbjct: 148 AALAELDAVLVGGGPAPAPVLDAAAA----AGINVVRTYGMSETS 188

Length = 358

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 87/398 (21%), Positives = 162/398 (40%), Gaps = 64/398 (16%)

Query: 30   VHFLFRNSASYSSK-LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
            +H LF   A+ + +  AL  A   ++LS+++  +   +++ + R  G+  +  V +    
Sbjct: 2190 LHGLFAAQAARTPQAPALTFAG--QTLSYAELDARANRLARALRERGVGPQVRVGLALER 2247

Query: 89   SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
            S+   +  L ++  G      +P Y +  L   ++DS   L+++   L++ + +  LPA 
Sbjct: 2248 SLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGE--LPA- 2304

Query: 149  LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
                   V+   L   ++ + ++ D          +P +S+ Q   A L+Y+SG+TG  K
Sbjct: 2305 ------GVARWCLEDDAAALAAYSD--------APLPFLSLPQ-HQAYLIYTSGSTGKPK 2349

Query: 209  GVILTHKNF-------IAASLMISAHQELVGELDHVVLCVLPMFHVFGL-----SVILYD 256
            GV+++H          I    M +   EL               H + +     S  L  
Sbjct: 2350 GVVVSHGEIAMHCQAVIERFGMRADDCEL---------------HFYSINFDAASERLLV 2394

Query: 257  QLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
             L  G  VV  + G++  E   + I + +V++    P     LA+  L  + +   +++ 
Sbjct: 2395 PLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQ-WLAGQGEQLPVRMC 2453

Query: 315  GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC-------APISLENPLVGVRRSGSA 367
             +G   L  E ++  ++       F   YG TET        AP  LE     V      
Sbjct: 2454 ITGGEALTGEHLQRIRQAFAPQLFFN-AYGPTETVVMPLACLAPEQLEEGAASV----PI 2508

Query: 368  GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            G +V    A I+  D L  +P    GE++V G  +  G
Sbjct: 2509 GRVVGARVAYILDAD-LALVPQGATGELYVGGAGLAQG 2545

Length = 4334

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 40/101 (39%), Positives = 50/101 (49%), Gaps = 23/101 (22%)

Query: 316 SGAAPLGKELMEDCQK--NIP-GATIFQVGYGMTETCAPISL---ENPLVGVRRSG---- 365
           SG APL      D Q+  NI  GA I Q GYG+TETCA  +    ++  VG  R G    
Sbjct: 427 SGGAPLSG----DTQRFINICLGAPIGQ-GYGLTETCAGATFSEWDDTSVG--RVGPPLP 479

Query: 366 -SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
                LV+  E   +  D  KP+P    GEI + GP+VT G
Sbjct: 480 CCYVKLVSWEEGGYLISD--KPMPR---GEIVIGGPSVTLG 515

Length = 696

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 22/136 (16%)

Query: 116 SELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175
           ++LS +++D +   +    E  +K+KDL         K+K    G+      I+ F D+ 
Sbjct: 244 NDLSNELEDISLGPLEYDKEKLEKIKDL---------KEKAKKLGI-----SIILFDDMT 289

Query: 176 ELSGSVTDIPDVSVKQTDA---AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG 232
           +         +  ++  D     +++Y+SGT+G  KGV+L++KN     + +  H     
Sbjct: 290 K-----NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKK 344

Query: 233 ELDHVVLCVLPMFHVF 248
                 L  LP+ H++
Sbjct: 345 YNPKTHLSYLPISHIY 360

Length = 746

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	436
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.96
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.95
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.93
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.89
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.87
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.75
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.71
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.67
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.26
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.94
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	96.59
PLN02247	606	indole-3-acetic acid-amido synthetase	96.53
PLN02620	612	indole-3-acetic acid-amido synthetase	96.28
PLN02249	597	indole-3-acetic acid-amido synthetase	95.99
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	95.64
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	90.42
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	90.35
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	84.13
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	82.33
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	81.62

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-61  Score=435.15  Aligned_cols=393  Identities=25%  Similarity=0.337  Sum_probs=344.1

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      +.|+++.|+..+++.||+.|.+....+.++||+||.+.++++|..|.+.|+++||+|++..||+.+|+.++|||.++|.+
T Consensus        49 ~~Tigq~l~~~t~~v~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v  128 (596)
T KOG1177|consen   49 SETIGQLLETTTERVPDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLV  128 (596)
T ss_pred             cccHHHHHHHHhhccCcceEEEEeeccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceE
Confidence            47899999999999999999998888889999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccch-----HHHHhhcC------------------CCcEEeccCCcccccccc
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPEL-----WDKVKDLN------------------LPAVLLGSKDKVSSSGLI  162 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~~------------------~~~~~~~~~~~~~~~~~~  162 (436)
                      .+++||.+...++++.|++.+++++|..+.+     .+.++++.                  ...+++..++        
T Consensus       129 ~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed--------  200 (596)
T KOG1177|consen  129 LVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED--------  200 (596)
T ss_pred             EeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC--------
Confidence            9999999999999999999999999988532     33333332                  1233333321        


Q ss_pred             ccCcccchhhHHhhhcCCCCC----CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEE
Q 013780          163 SRSSKIVSFHDLIELSGSVTD----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV  238 (436)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~  238 (436)
                      .+..+...+++.+.....+..    .......+++.+.|.|||||||.||++.+||-|+++++........+...  +++
T Consensus       201 ~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~--~~i  278 (596)
T KOG1177|consen  201 HPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEK--HRI  278 (596)
T ss_pred             CcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcc--eEE
Confidence            456677788888876654211    11234568999999999999999999999999999999998888888664  899


Q ss_pred             EechhHHHHHHHHHHHHhhccCCcEEEEc-CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEec
Q 013780          239 LCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSG  317 (436)
Q Consensus       239 ~~~~p~~~~~g~~~~~~~~l~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~g  317 (436)
                      ++..|++|.+|.....+++|..|++++++ +.|++...++.|++++||.++++|+++..|++.+.....+++++|.++.|
T Consensus       279 ~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vig  358 (596)
T KOG1177|consen  279 CIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIG  358 (596)
T ss_pred             EecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeC
Confidence            99999999999888999999999999997 67999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCC-CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEE
Q 013780          318 AAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW  396 (436)
Q Consensus       318 g~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~  396 (436)
                      |+++++++++.+.+...=..+.. .||+||++..++.....+ ...+..++|+.+++.|..|+| ..|..++.|.+||||
T Consensus       359 Ga~~s~eLlk~iv~~~~m~~i~v-~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~  436 (596)
T KOG1177|consen  359 GAPVSPELLKLIVNQMNMKDIAV-AYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELL  436 (596)
T ss_pred             CCCCCHHHHHHHHHhhCceeeEE-EeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCCCceEE
Confidence            99999999999999765233455 999999998777654443 256788999999999999999 699999999999999


Q ss_pred             EecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          397 VRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       397 v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +||+++|.|  ||++++.|.++.+   .+.|++|||.|.
T Consensus       437 iRGY~tMl~--Ywg~~~kT~eti~---~drW~~TGDi~~  470 (596)
T KOG1177|consen  437 IRGYSTMLG--YWGEEEKTKETIG---NDRWYDTGDIAV  470 (596)
T ss_pred             EEechhhee--ecCCcccchhhcc---cccceecCceEE
Confidence            999999999  9999999999885   788999999863

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=5.1e-60  Score=455.62  Aligned_cols=388  Identities=38%  Similarity=0.604  Sum_probs=322.6

Q ss_pred             HHhhhcccCCCc-eEEEeCCC-CccccHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEe
Q 013780           32 FLFRNSASYSSK-LALIDADS-DESLSFSQFKSIVIKVSHSFRHLG--ITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (436)
Q Consensus        32 ~l~~~~~~~p~~-~a~~~~~~-~~~~Ty~el~~~~~~la~~L~~~g--v~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v  107 (436)
                      .+.+.+..++++ +.+++... |..+||.|+++++.++|..|.++|  +++||+|++++||++++.++++||+.+|+++.
T Consensus        21 ~l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~  100 (537)
T KOG1176|consen   21 FLGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLN  100 (537)
T ss_pred             cccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcccc
Confidence            334444444444 66666543 699999999999999999999776  89999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccCCccccccccccCcccchhhHHhhhcCCCCC
Q 013780          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (436)
Q Consensus       108 ~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (436)
                      ++||.+...++.+.++.++++++|++....+.+....    .+.+++.....  .............+..+.....  +.
T Consensus       101 ~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~  176 (537)
T KOG1176|consen  101 PLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEG--VISISDLVEDLDAFEDLMPEGL--PD  176 (537)
T ss_pred             ccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccC--ccccccccccccchhhccccCC--Cc
Confidence            9999999999999999999999999999888775554    22232222100  0000011111111344333332  22


Q ss_pred             CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcE
Q 013780          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (436)
Q Consensus       184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  263 (436)
                      . ......+++++++|||||||.||||++||+++..+.......+.....  ++.++.+|++|.+|+...+.+.+..|++
T Consensus       177 ~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~--~v~l~~lPl~H~~Gl~~~~~~~~~~~~~  253 (537)
T KOG1176|consen  177 G-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSD--DVYLCTLPLFHIYGLITLLLSLLAGGTT  253 (537)
T ss_pred             c-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCC--ceEEEechHHHHhHHHHHHHHHHhCCce
Confidence            2 455677999999999999999999999999999987765555555443  9999999999999998777778888888


Q ss_pred             EEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       264 v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      ++..+.|++..+++.+++|++|++.++|.++..|++.+.....+++++|.+.+||+++++++.+++++++|...+.+ .|
T Consensus       254 ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q-~Y  332 (537)
T KOG1176|consen  254 IICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQ-GY  332 (537)
T ss_pred             EEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEE-ee
Confidence            88889999999999999999999999999999999998777789999999999999999999999999999899999 99


Q ss_pred             cccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccc
Q 013780          344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEH  423 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~  423 (436)
                      |+||+++.++.+...+. .+++++|+++++++.+|.+ ++|+.+++++.||||++|+++|.|  ||+||++|++.|.   
T Consensus       333 GmTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkG--Y~~NpeaT~~~~~---  405 (537)
T KOG1176|consen  333 GMTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKG--YLKNPEATKEAFD---  405 (537)
T ss_pred             ccccccCceeecCCCcc-CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchh--hcCChHHHHhhcc---
Confidence            99999988887776643 6899999999988888888 799999999999999999999999  9999999999883   


Q ss_pred             cCCeeecCCCC
Q 013780          424 TDSFIRGKDQQ  434 (436)
Q Consensus       424 ~~~~~~tgD~~  434 (436)
                      .+|||+|||+|
T Consensus       406 ~~GW~~TGDiG  416 (537)
T KOG1176|consen  406 DDGWFHTGDLG  416 (537)
T ss_pred             cCCccccCceE
Confidence            33999999986

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.3e-59  Score=463.19  Aligned_cols=390  Identities=35%  Similarity=0.503  Sum_probs=327.3

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      ..++.+.|.+.++.+|+++|+++.+.+.++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++
T Consensus        10 ~~~~~~~l~~~a~~~~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav   89 (534)
T COG0318          10 ELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAV   89 (534)
T ss_pred             cccHHHHHHHHHHhCCCceEEEEcCCCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEE
Confidence            37899999999999999999999843334999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC---CCcEEeccCCccccccccccCccc--chhhHHhhhcCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKI--VSFHDLIELSGS  180 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  180 (436)
                      ++|+||.+...++.++++.+++++++++....+.+....   .....+....         .....  ..+++.......
T Consensus        90 ~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  160 (534)
T COG0318          90 AVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVG---------DADDRLPITLEALAAEGPG  160 (534)
T ss_pred             EeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecc---------cccccccccHHHHhhccCC
Confidence            999999999999999999999999999987444333332   1111111110         01111  245555333321


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh--ccCCCCcEEEechhHHHHHHHHHHHHhhc
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE--LVGELDHVVLCVLPMFHVFGLSVILYDQL  258 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~g~~~~~~~~l  258 (436)
                       .........++++++++|||||||.||+|++||+|+..+...+.....  +...  |++++++|++|.+|+...++.++
T Consensus       161 -~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~--d~~l~~lPl~H~~Gl~~~~~~~~  237 (534)
T COG0318         161 -PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPD--DVVLSWLPLFHIFGLIVGLLAPL  237 (534)
T ss_pred             -cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCC--ceEEEecChHHHHHHHHHHHHHH
Confidence             112222267999999999999999999999999999999887777766  4333  88999999999999997788889


Q ss_pred             cCCcEEEEcC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCc-ceEEEecCCCCcHHHHHHHHhhCCC
Q 013780          259 QKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS-LKLVGSGAAPLGKELMEDCQKNIPG  335 (436)
Q Consensus       259 ~~G~~v~~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~-lr~i~~gg~~l~~~~~~~~~~~~~~  335 (436)
                      ..|+++++.+  .|++..++..+.++++|+++++|+++..|+.+......++++ ||.+++||+++++++++++++.|+.
T Consensus       238 ~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~  317 (534)
T COG0318         238 LGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGP  317 (534)
T ss_pred             HcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCC
Confidence            9999999997  699999999999999999999999999999998877766776 9999999999999999999999986


Q ss_pred             CeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhh
Q 013780          336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFT  415 (436)
Q Consensus       336 ~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~  415 (436)
                      ..+++ .||+||++++++.........+.+++|+|+|+++++|+|+++++++| |++|||+++||+++.|  ||++|+.|
T Consensus       318 ~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~G--Y~~~pe~t  393 (534)
T COG0318         318 IAILE-GYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKG--YWNRPEAT  393 (534)
T ss_pred             CceEE-eecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhh--hcCChHHH
Confidence            78999 99999999877776655201467888999999999999986776666 9999999999999999  99999999


Q ss_pred             hhhccccccCCeeecCCCC
Q 013780          416 LFLWGCEHTDSFIRGKDQQ  434 (436)
Q Consensus       416 ~~~~~~~~~~~~~~tgD~~  434 (436)
                      .+.|.   .+|||+|||+|
T Consensus       394 ~~~f~---~~gW~~TGDlg  409 (534)
T COG0318         394 AEAFD---EDGWLRTGDLG  409 (534)
T ss_pred             HHhhc---cCCeeeecceE
Confidence            99872   25999999997

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-58  Score=469.97  Aligned_cols=417  Identities=18%  Similarity=0.269  Sum_probs=320.8

Q ss_pred             CCCcceeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEEeCCCC---ccccHHHHHHHHHHHHHHHHh---cCCCCC
Q 013780            6 YGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRH---LGITKK   79 (436)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~---~~~Ty~el~~~~~~la~~L~~---~gv~~g   79 (436)
                      ..++.++|.....-..+-..-.|+.++|.+.++++|+++|+++...+   +.+||+||.+++.++|+.|.+   +|+++|
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g  119 (746)
T PTZ00342         40 ENESSVYCMKDHKKKSSLYVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEK  119 (746)
T ss_pred             CCCCCceecCchhhcccccccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcC
Confidence            34455776443222222222378999999999999999999874333   689999999999999999997   499998


Q ss_pred             -----------CEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----
Q 013780           80 -----------DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----  144 (436)
Q Consensus        80 -----------d~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----  144 (436)
                                 |+|+|+++|+++|+++.+||+++|+++||+++.++.+++.+++++++++++|++.+..+.+....    
T Consensus       120 ~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~  199 (746)
T PTZ00342        120 KYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELP  199 (746)
T ss_pred             ccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCC
Confidence                       99999999999999999999999999999999999999999999999999999877766654332    


Q ss_pred             -CCcEEeccCCcccc-----------------cccc-----------------------------------------ccC
Q 013780          145 -LPAVLLGSKDKVSS-----------------SGLI-----------------------------------------SRS  165 (436)
Q Consensus       145 -~~~~~~~~~~~~~~-----------------~~~~-----------------------------------------~~~  165 (436)
                       .+.+++..+.....                 ....                                         ...
T Consensus       200 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  279 (746)
T PTZ00342        200 HLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLG  279 (746)
T ss_pred             CceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCC
Confidence             22333322210000                 0000                                         000


Q ss_pred             cccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHH
Q 013780          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (436)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~  245 (436)
                      .....|++......  .........+++++.|+|||||||.||||++||+|+.+++.............++++++.+|++
T Consensus       280 ~~~~~~~~~~~~~~--~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~  357 (746)
T PTZ00342        280 ISIILFDDMTKNKT--TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPIS  357 (746)
T ss_pred             CEEEEHHHHHhhcc--cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHH
Confidence            00112222222211  1122334567899999999999999999999999999887655432211122348999999999


Q ss_pred             HHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhc--------cccCc------------
Q 013780          246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN--------SLVRK------------  305 (436)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~--------~~~~~------------  305 (436)
                      |++++. ..+.++..|+++++.+. ++..+++.|++++||+++++|.++..|.+.        ...+.            
T Consensus       358 Hi~~~~-~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~  435 (746)
T PTZ00342        358 HIYERV-IAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKS  435 (746)
T ss_pred             HHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            999996 56778999999998865 899999999999999999999999988652        10000            


Q ss_pred             ----------------------cCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccC
Q 013780          306 ----------------------FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRR  363 (436)
Q Consensus       306 ----------------------~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~  363 (436)
                                            ...++||.+++||+++++++.++|++.++ +++++ +||+||+++.++...+.  +.+
T Consensus       436 ~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~-gYGlTEt~~~~~~~~~~--~~~  511 (746)
T PTZ00342        436 NNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQ-GYGLTETTGPIFVQHAD--DNN  511 (746)
T ss_pred             hhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEE-eeccCcccceeeeccCC--CCC
Confidence                                  01268999999999999999999999887 99999 99999998776665544  567


Q ss_pred             cCcccccc-CCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          364 SGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       364 ~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ++++|+|+ |+++++|+|.+++...+.+..|||+++||++|.|  ||++|+.|++.|.   .+|||+|||+|+
T Consensus       512 ~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~G--Y~~~pe~T~~~f~---~dGW~~TGDig~  579 (746)
T PTZ00342        512 TESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSG--YFLEKEQTKNAFT---EDGYFKTGDIVQ  579 (746)
T ss_pred             cccccCcCCCcEEEEEecccccccCCCCCceEEEEecCccccc--ccCChhhhhhhcC---cCCcccCCcEEE
Confidence            89999998 9999999986555555556789999999999999  9999999999883   588999999873

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1e-57  Score=464.74  Aligned_cols=417  Identities=20%  Similarity=0.276  Sum_probs=316.2

Q ss_pred             CCCcceeecCCCCCcCC--CCCCCchHHHHhhhcccCCCceEEEeCC-----CC--ccccHHHHHHHHHHHHHHHHhcCC
Q 013780            6 YGRDGIYRSLRPPLVLP--SDPSFSMVHFLFRNSASYSSKLALIDAD-----SD--ESLSFSQFKSIVIKVSHSFRHLGI   76 (436)
Q Consensus         6 ~~~~~~~~~~~~~~~~~--~~~~~ti~~~l~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~gv   76 (436)
                      ..+..+++++.....++  .....|+.++|.+.++++|+++|+.+.+     .+  .++||+||.++++++|+.|.++|+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv  101 (666)
T PLN02614         22 PSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGV  101 (666)
T ss_pred             CCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCC
Confidence            55566666654333332  2222599999999999999999998421     12  358999999999999999999999


Q ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC------CCcEEe
Q 013780           77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN------LPAVLL  150 (436)
Q Consensus        77 ~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~  150 (436)
                      ++||+|+|+++|+++|++++|||+++|+++||+++.++.+++.+++++++++++|++......+....      .+.++.
T Consensus       102 ~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~  181 (666)
T PLN02614        102 KDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVS  181 (666)
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEE
Confidence            99999999999999999999999999999999999999999999999999999999877655443221      122222


Q ss_pred             ccCCcccccc--ccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhh
Q 013780          151 GSKDKVSSSG--LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ  228 (436)
Q Consensus       151 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~  228 (436)
                      ..+ ......  .......+.++++++..... .........++++++|+|||||||.||||++||+++..++.......
T Consensus       182 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~  259 (666)
T PLN02614        182 FGG-VSREQKEEAETFGLVIYAWDEFLKLGEG-KQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLL  259 (666)
T ss_pred             eCC-CChHHhhhhhhcCcEEEEHHHHHhhccc-CCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhc
Confidence            211 000000  00001113456666544321 11112234678999999999999999999999999998766543332


Q ss_pred             h---ccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--
Q 013780          229 E---LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--  303 (436)
Q Consensus       229 ~---~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--  303 (436)
                      .   ..-..+|++++.+|++|.++.. ..+.++..|+++++.+ +++..+++.+++++||+++++|+++..|.+....  
T Consensus       260 ~~~~~~~~~~d~~l~~lPl~H~~~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  337 (666)
T PLN02614        260 KSANAALTVKDVYLSYLPLAHIFDRV-IEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKL  337 (666)
T ss_pred             cccccCCCCCcEEEEeccHHHHHHHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHH
Confidence            1   0112339999999999999986 4566788999998875 5899999999999999999999999887642100  


Q ss_pred             -------------------------------Cc-----------cCC-CcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780          304 -------------------------------RK-----------FDI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (436)
Q Consensus       304 -------------------------------~~-----------~~l-~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~  340 (436)
                                                     ..           ..+ ++||.+++||+++++++ ++|.+.++++++++
T Consensus       338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~  416 (666)
T PLN02614        338 SDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQ  416 (666)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEe
Confidence                                           00           011 68999999999999875 56677776689999


Q ss_pred             ccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeC-C-CCccCCCCCceEEEEecCCcccCccccCChhhhhhh
Q 013780          341 VGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV-D-TLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFL  418 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~-~-~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~  418 (436)
                       +||+||+++.++...+.. ..+.+++|+|+|+++++|+|. + .+.++++|+.|||+|+||+++.|  ||++|+.|.+.
T Consensus       417 -~YG~TE~~~~~~~~~~~~-~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~G--Y~~~pe~T~~~  492 (666)
T PLN02614        417 -GYGLTESCAGTFVSLPDE-LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSG--YYKREDLTKEV  492 (666)
T ss_pred             -eCchHhhhhheeeecccc-CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCccccc--ccCCHHHhhhh
Confidence             999999976555443331 245789999999999999983 2 34788999999999999999999  99999999998


Q ss_pred             ccccccCCeeecCCCCC
Q 013780          419 WGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       419 ~~~~~~~~~~~tgD~~~  435 (436)
                      |    .+|||+|||+|+
T Consensus       493 f----~dGw~~TGDlg~  505 (666)
T PLN02614        493 L----IDGWLHTGDVGE  505 (666)
T ss_pred             h----ccCCcccceEEE
Confidence            8    478999999874

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2.1e-57  Score=440.75  Aligned_cols=380  Identities=29%  Similarity=0.358  Sum_probs=304.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~  104 (436)
                      .++...+.++++.+|+..++.+...+  +.+||+|+..++.++|++|...|+.+||+|+|++.|+++|+++.+||+.+|+
T Consensus        16 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~   95 (613)
T COG1022          16 HTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGA   95 (613)
T ss_pred             ccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCC
Confidence            67999999999999999999877544  8999999999999999999999997799999999999999999999999999


Q ss_pred             eEeecCCCCCHHHHHHHHHhcCCcEEEEccch-HHHHhhcCCC---cEEec--c---CCcccc--ccccc-cCcccchhh
Q 013780          105 IASTANPVYTVSELSKQVKDSNPKLVITVPEL-WDKVKDLNLP---AVLLG--S---KDKVSS--SGLIS-RSSKIVSFH  172 (436)
Q Consensus       105 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~-~~~~~~~~~~---~~~~~--~---~~~~~~--~~~~~-~~~~~~~~~  172 (436)
                      +.||+.+..+.+++.++|+.++++++|++... .+.+......   ...+.  .   +.....  ..+.. ...+...+ 
T Consensus        96 v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (613)
T COG1022          96 VSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF-  174 (613)
T ss_pred             eEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh-
Confidence            99999999999999999999999999999843 3333322210   00000  0   000000  00000 00011111 


Q ss_pred             HHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh-ccCCCCcEEEechhHHHHHHHH
Q 013780          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPMFHVFGLS  251 (436)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~  251 (436)
                       ......  .........++|+|.|+|||||||.||||++||+|+++++..+..... .  .+.|++++.+|+.|++...
T Consensus       175 -~~~~~~--~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~--~~~d~~LsfLPlaHi~Er~  249 (613)
T COG1022         175 -LIDSAG--LEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPI--GPGDRVLSFLPLAHIFERA  249 (613)
T ss_pred             -hhcccc--cccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCC--CCCcEEEEeCcHHHHHHHH
Confidence             011111  112224567999999999999999999999999999999998877775 3  2339999999999999997


Q ss_pred             HHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhc--------ccc--------------------
Q 013780          252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN--------SLV--------------------  303 (436)
Q Consensus       252 ~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~--------~~~--------------------  303 (436)
                      +.....++.|.++....  ++..++..+.+++||+++++|.+|+.+-+.        ...                    
T Consensus       250 ~~~~~~~~~g~~~~~~~--~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~  327 (613)
T COG1022         250 FEGGLALYGGVTVLFKE--DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRAL  327 (613)
T ss_pred             HHHHHHhhcceEEEecC--CHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence            54566666666666554  899999999999999999999999877432        000                    


Q ss_pred             --------------------CccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccC
Q 013780          304 --------------------RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRR  363 (436)
Q Consensus       304 --------------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~  363 (436)
                                          +...-.++|++++||+++++++...++..  ++++.+ +||+||++++++..++.  ..+
T Consensus       328 ~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~e-GYGlTEts~~~~v~~~~--~~~  402 (613)
T COG1022         328 LGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILE-GYGLTETSAVVSVNPPD--RFV  402 (613)
T ss_pred             cccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEE-EecccccccceEEcccc--Ccc
Confidence                                00011489999999999999999999988  699999 99999999999998887  789


Q ss_pred             cCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          364 SGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       364 ~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .+++|+|+|++++||+|.           |||+||||+||+|  ||++|+.|.++|+   .||||+|||+|+
T Consensus       403 ~gtvG~p~p~~evKI~d~-----------GEilVRG~~Vm~G--Yyk~pe~Taeaf~---~DGWf~TGDlg~  458 (613)
T COG1022         403 LGTVGKPLPGIEVKIADD-----------GEILVRGPNVMKG--YYKNPEATAEAFT---EDGWFRTGDLGE  458 (613)
T ss_pred             cCCcCCcCCCceEEEccC-----------ceEEEecchhcch--hcCChHHHhhhcc---ccCCcccCceeE
Confidence            999999999999999994           9999999999999  9999999999994   599999999974

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=6.3e-56  Score=445.87  Aligned_cols=413  Identities=36%  Similarity=0.588  Sum_probs=333.5

Q ss_pred             cceeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcC
Q 013780            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAP   87 (436)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~gd~V~l~~~   87 (436)
                      +++++++.+...+|..++.++.+.+... +.+|+++|+++...+..+||+||.++++++|+.|.+ .|+++||+|+++++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~  100 (560)
T PLN02574         22 TGIYSSKHPPVPLPSDPNLDAVSFIFSH-HNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLP  100 (560)
T ss_pred             CeeecCCCCCCCCCCCCCCCHHHHHhcC-cccCCCCEEEECCCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECC
Confidence            4666666555556666667777777766 789999999987656689999999999999999998 99999999999999


Q ss_pred             CCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcc
Q 013780           88 NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK  167 (436)
Q Consensus        88 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (436)
                      |++++++++|||+++|+++++++|..+.+++.++++.+++++++++......+.......+.+... .. ..   .....
T Consensus       101 n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~---~~~~~  175 (560)
T PLN02574        101 NSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPEN-YD-FD---SKRIE  175 (560)
T ss_pred             CcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCcc-cc-cc---cCccC
Confidence            999999999999999999999999999999999999999999999987766665543332222110 00 00   01112


Q ss_pred             cchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh--c-cCCCCcEEEechhH
Q 013780          168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE--L-VGELDHVVLCVLPM  244 (436)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~-~~~~~~~~~~~~p~  244 (436)
                      ...+.++.....  .........++++++++|||||||.||+|++||+++..++..+.....  . ....+++++..+|+
T Consensus       176 ~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  253 (560)
T PLN02574        176 FPKFYELIKEDF--DFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM  253 (560)
T ss_pred             cccHHHHhhcCC--cccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecch
Confidence            234555544432  222233446789999999999999999999999999887665432111  1 11123888999999


Q ss_pred             HHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc-CccCCCcceEEEecCCCCcH
Q 013780          245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV-RKFDISSLKLVGSGAAPLGK  323 (436)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~-~~~~l~~lr~i~~gg~~l~~  323 (436)
                      +|.+|+...++.++..|+++++.+++++..+++.++++++|++.++|+++..|.+.... ...++++||.+++||+++++
T Consensus       254 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~  333 (560)
T PLN02574        254 FHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSG  333 (560)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCH
Confidence            99999987788888999999999999999999999999999999999999999887543 34568899999999999999


Q ss_pred             HHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcc
Q 013780          324 ELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT  403 (436)
Q Consensus       324 ~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~  403 (436)
                      ++.+++.+.++++.+++ .||+||++++.+.........+.+++|+|+++++++|+|+++++++++|+.|||+++|++++
T Consensus       334 ~~~~~~~~~~~~~~v~~-~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~  412 (560)
T PLN02574        334 KFIQDFVQTLPHVDFIQ-GYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVM  412 (560)
T ss_pred             HHHHHHHHHCCCCcEEe-cccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchh
Confidence            99999999997799999 99999998665433222223567899999999999999988999999999999999999999


Q ss_pred             cCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          404 PGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       404 ~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .|  ||++|+.+.+.|   ..+|||+|||+|+
T Consensus       413 ~G--Y~~~~~~t~~~~---~~~g~~~TGDlg~  439 (560)
T PLN02574        413 KG--YLNNPKATQSTI---DKDGWLRTGDIAY  439 (560)
T ss_pred             hh--hcCChhHhhhhc---cCCCCcccceEEE
Confidence            99  999999998876   2578999999863

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=4.8e-56  Score=425.75  Aligned_cols=377  Identities=25%  Similarity=0.355  Sum_probs=311.4

Q ss_pred             CchHHH-Hhhhcc-cCCCceEEEeCCCC---ccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013780           27 FSMVHF-LFRNSA-SYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVI  100 (436)
Q Consensus        27 ~ti~~~-l~~~~~-~~p~~~a~~~~~~~---~~~Ty~el~~~~~~la~~L~~-~gv~~gd~V~l~~~n~~~~~~~~lA~~  100 (436)
                      +|+... +.++.. ..+++.|+++..+.   +.+||+||.+.+.++|+.|++ .|+ +||||+|++|+.+++++++|||+
T Consensus         8 lN~~~n~~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~   86 (528)
T COG0365           8 LNLALNALDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA   86 (528)
T ss_pred             eechhhhhhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence            556444 455544 34789999877432   789999999999999999986 678 99999999999999999999999


Q ss_pred             HhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCc--------EEeccCCccccccccccCcccchhh
Q 013780          101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA--------VLLGSKDKVSSSGLISRSSKIVSFH  172 (436)
Q Consensus       101 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  172 (436)
                      ++|++.+|+.+.++++.+.+.+++++++++|+++...+..+....+.        +++...            .. ..|.
T Consensus        87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r------------~~-~~~~  153 (528)
T COG0365          87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPR------------LG-LWYD  153 (528)
T ss_pred             HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecc------------cc-ccHH
Confidence            99999999999999999999999999999999987766554433111        111111            11 5677


Q ss_pred             HHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH
Q 013780          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (436)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~  252 (436)
                      +......  ..........+|+++++|||||||+||+|+++|+.++............ ...+|++++..++.|++|.++
T Consensus       154 ~~~~~~~--~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~-~~~~Dv~w~~ad~GW~~g~~~  230 (528)
T COG0365         154 EAVEKAS--EKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGD-LLPGDRFWNSSDPGWIYGLWY  230 (528)
T ss_pred             HHhhccC--CCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhC-CCCCCEEEeCCCchhhhCchH
Confidence            7776655  3444455889999999999999999999999999887776544332222 224499999999999999998


Q ss_pred             HHHhhccCCcEEEEcC--CC-CHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHH
Q 013780          253 ILYDQLQKGNCVVSMG--KF-DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC  329 (436)
Q Consensus       253 ~~~~~l~~G~~v~~~~--~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~  329 (436)
                      .++.+|..|+++++.+  ++ ++..+++.++++++|.++++|+.++.|.+....+..++++||.+.+.|||+++++++++
T Consensus       231 ~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~  310 (528)
T COG0365         231 SVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWF  310 (528)
T ss_pred             HHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHH
Confidence            8999999999998884  23 49999999999999999999999999999887667899999999999999999999999


Q ss_pred             HhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecC--CcccCcc
Q 013780          330 QKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP--NVTPGIV  407 (436)
Q Consensus       330 ~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~--~~~~g~~  407 (436)
                      .+.++ ++|.+ .||+||++++.....+   ..++++.|+|+||+++.|+|.+ |+++++|+ |+|+++.+  .++.+  
T Consensus       311 ~~~~g-~~i~d-~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~--  381 (528)
T COG0365         311 YSALG-VWILD-IYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALT--  381 (528)
T ss_pred             HHHhC-CCEec-cccccccCccccCCCC---CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhh--
Confidence            99998 99999 9999999965555443   3455555999999999999965 99999999 99999997  88999  


Q ss_pred             ccCChhhhhhhccccccCCeeecCCC
Q 013780          408 YINFFVFTLFLWGCEHTDSFIRGKDQ  433 (436)
Q Consensus       408 Y~~~~~~~~~~~~~~~~~~~~~tgD~  433 (436)
                      ||++|+.+.+.+    -+.||.|||.
T Consensus       382 ~w~d~er~~~~y----~~~~y~tGD~  403 (528)
T COG0365         382 YWNDPERYKEAY----FGRWYRTGDW  403 (528)
T ss_pred             hhCCHHHHHHHH----hhceeecCce
Confidence            999999999877    1226666664

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.9e-56  Score=453.51  Aligned_cols=395  Identities=20%  Similarity=0.259  Sum_probs=305.3

Q ss_pred             CchHHHHhhhcccCCCceEEEeC-----CCC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013780           27 FSMVHFLFRNSASYSSKLALIDA-----DSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~-----~~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~   99 (436)
                      .|+.++|.+.++++|+++|+...     ..+  +++||+||.++++++|+.|.++|+++||+|+|+++|+++|++++|||
T Consensus        43 ~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~  122 (660)
T PLN02861         43 DSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (660)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            68999999999999999999642     112  47999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC------CCcEEeccCCcccccc--ccccCcccchh
Q 013780          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN------LPAVLLGSKDKVSSSG--LISRSSKIVSF  171 (436)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~  171 (436)
                      +++|+++||+++.++.+++.+++++++++++|+++...+.+....      .+.++...+ ......  .........++
T Consensus       123 ~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~-~~~~~~~~~~~~~~~~~~~  201 (660)
T PLN02861        123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGD-VSSEQKEEAEELGVSCFSW  201 (660)
T ss_pred             HHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECC-CChhhhhhhhcCCcEEEEH
Confidence            999999999999999999999999999999999877655443321      222332211 100000  00001123456


Q ss_pred             hHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhcc---CCCCcEEEechhHHHHH
Q 013780          172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV---GELDHVVLCVLPMFHVF  248 (436)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~  248 (436)
                      .++.....  .........++++++|+|||||||.||||++||+++..++..........   ...+|++++.+|++|.+
T Consensus       202 ~~~~~~~~--~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~  279 (660)
T PLN02861        202 EEFSLMGS--LDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVY  279 (660)
T ss_pred             HHHHHhCc--ccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHH
Confidence            66654432  11122334678999999999999999999999999998876554433211   12349999999999999


Q ss_pred             HHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcc---------------------------
Q 013780          249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS---------------------------  301 (436)
Q Consensus       249 g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~---------------------------  301 (436)
                      ++. ..+.++..|+++++.. +++..+++.|++++||+++++|+++..|.+..                           
T Consensus       280 ~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~  357 (660)
T PLN02861        280 DQV-IETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLR  357 (660)
T ss_pred             HHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHh
Confidence            986 4556899999998874 58999999999999999999999999886410                           


Q ss_pred             ----------ccCcc-------CC-CcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccC
Q 013780          302 ----------LVRKF-------DI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRR  363 (436)
Q Consensus       302 ----------~~~~~-------~l-~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~  363 (436)
                                .....       .+ .++|.+++||+++++++. +|.+.++...+++ +||+||+++.++...... ..+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~-~YG~TE~~~~~~~~~~~~-~~~  434 (660)
T PLN02861        358 KGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQ-GYGLTESCGGCFTSIANV-FSM  434 (660)
T ss_pred             cCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeE-ecchhhhhhceeeccccc-CCC
Confidence                      00000       11 579999999999999975 4666666457899 999999987655443321 335


Q ss_pred             cCccccccCCcEEEEEeC-CCC-ccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          364 SGSAGTLVAGVEAQIVSV-DTL-KPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       364 ~~~~G~p~~~~~v~i~d~-~~~-~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .+++|+|+|+++++|+|. ++| ..+++++.|||+++|++++.|  ||++|+.|.+.|    .+|||+|||+|+
T Consensus       435 ~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~G--Y~~~pe~T~~~f----~dGw~~TGDlg~  502 (660)
T PLN02861        435 VGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSG--YHKRQDLTEEVL----IDGWFHTGDIGE  502 (660)
T ss_pred             CCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCccccc--ccCCHHHHHhhh----hccCcccCceEE
Confidence            789999999999999983 344 344566789999999999999  999999999998    478999999874

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=6.4e-56  Score=424.14  Aligned_cols=400  Identities=24%  Similarity=0.284  Sum_probs=326.5

Q ss_pred             CCCCchHHHHhhhcccCCCceEEEeCC----CC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHH
Q 013780           24 DPSFSMVHFLFRNSASYSSKLALIDAD----SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL   97 (436)
Q Consensus        24 ~~~~ti~~~l~~~~~~~p~~~a~~~~~----~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~l   97 (436)
                      .+..|+.+.|.+.+..+|+.+++-...    .+  +++||.|.++++.+++..|+++|+++++.|+|+..|++||+++.+
T Consensus        72 ~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~  151 (691)
T KOG1256|consen   72 DGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEM  151 (691)
T ss_pred             CCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHH
Confidence            344999999999999999999996553    12  799999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEc-cchHHHHhhcC-------CCcEEeccCCccccc--cccccCcc
Q 013780           98 GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV-PELWDKVKDLN-------LPAVLLGSKDKVSSS--GLISRSSK  167 (436)
Q Consensus        98 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~  167 (436)
                      ||...|++.||+-...+++.+.++++.+.+.++|++ ++..+.+.+..       ++.++.... .....  ........
T Consensus       152 a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~-~~~~~~~~~~~~gv~  230 (691)
T KOG1256|consen  152 ACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDE-PSDELKEKAENNGVE  230 (691)
T ss_pred             HHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecC-CchhhhhhhhcCCeE
Confidence            999999999999999999999999999999999999 45555554422       333443322 11111  11122234


Q ss_pred             cchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhcc----CCCCcEEEechh
Q 013780          168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV----GELDHVVLCVLP  243 (436)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~p  243 (436)
                      +.+|+++.+.+......++....+++.+.|+|||||||.||||++||+|+...+..........    ...+|++++++|
T Consensus       231 v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLP  310 (691)
T KOG1256|consen  231 VYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLP  310 (691)
T ss_pred             EEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCc
Confidence            8899999998864222222577899999999999999999999999999999655322222221    112399999999


Q ss_pred             HHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhc-----------------------
Q 013780          244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN-----------------------  300 (436)
Q Consensus       244 ~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~-----------------------  300 (436)
                      +.|++..++ -...+..|+++.+..+ |+..+...|++.+||.+.++|.+|.++.+.                       
T Consensus       311 LAHi~er~~-~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k  388 (691)
T KOG1256|consen  311 LAHIFERVV-ELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYK  388 (691)
T ss_pred             HHHHHHHHH-HHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            999999974 4455589999999974 899999999999999999999999877442                       


Q ss_pred             c---ccCccC-------------------CCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCC
Q 013780          301 S---LVRKFD-------------------ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPL  358 (436)
Q Consensus       301 ~---~~~~~~-------------------l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~  358 (436)
                      .   ...+..                   -..+|.+++|++|+++++.+.++..++ ++|.+ +||+||+++.++...+.
T Consensus       389 ~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g-~~v~e-GYGlTEts~g~~~~~~~  466 (691)
T KOG1256|consen  389 LEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG-CRVLE-GYGLTETSAGTTLTLPG  466 (691)
T ss_pred             HHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC-ceeee-cccccccCCceEeccCC
Confidence            0   000100                   148999999999999999999999997 99999 99999999666665555


Q ss_pred             CCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          359 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       359 ~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                        +...+++|.|+|++++|++|..+..--+.|..|||||||++++.|  ||++|+.|.+.++   .+||++|||.|+
T Consensus       467 --d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~G--YyK~p~~T~e~id---eDGWLhTGDiG~  536 (691)
T KOG1256|consen  467 --DNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMG--YYKDPEKTAEAID---EDGWLHTGDIGE  536 (691)
T ss_pred             --CCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhcee--ccCChHHHhhhhc---ccccccccccee
Confidence              448999999999999999998776666777789999999999999  9999999999984   899999999985

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=9.4e-56  Score=451.37  Aligned_cols=395  Identities=21%  Similarity=0.255  Sum_probs=312.8

Q ss_pred             CchHHHHhhhcccCCCceEEEe---CCC--C--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013780           27 FSMVHFLFRNSASYSSKLALID---ADS--D--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~---~~~--~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~   99 (436)
                      .|+.++|.+.++++|+++|+..   .+.  +  ..+||+||.++++++|+.|.++|+++||+|+|+++|+++|+++++||
T Consensus        44 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~  123 (651)
T PLN02736         44 GTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC  123 (651)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            7899999999999999999943   211  1  46999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCcccccc-ccccCcccchhhH
Q 013780          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSG-LISRSSKIVSFHD  173 (436)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  173 (436)
                      +++|++++|+++.++.+++.+++++++++++|++.+..+.+....     .+.+++..+....... ..........+++
T Consensus       124 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~  203 (651)
T PLN02736        124 SAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSK  203 (651)
T ss_pred             HHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHH
Confidence            999999999999999999999999999999999987766554321     1222222110000000 0001112456666


Q ss_pred             HhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHH
Q 013780          174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI  253 (436)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~  253 (436)
                      +.+.... .........++++++|+|||||||.||||++||+++..++........+.  ++|++++.+|++|.+++. .
T Consensus       204 ~~~~~~~-~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~--~~d~~l~~lPl~h~~~~~-~  279 (651)
T PLN02736        204 LLAQGRS-SPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFY--PSDVHISYLPLAHIYERV-N  279 (651)
T ss_pred             HHHhccc-CCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCC--CCCEEEEeCCHHHHHHHH-H
Confidence            6654321 11122334678999999999999999999999999998877766555443  349999999999999996 6


Q ss_pred             HHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc----------------------------C-
Q 013780          254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV----------------------------R-  304 (436)
Q Consensus       254 ~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~----------------------------~-  304 (436)
                      ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+....                            . 
T Consensus       280 ~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (651)
T PLN02736        280 QIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNP  358 (651)
T ss_pred             HHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            7788999999988764 789999999999999999999999887653100                            0 


Q ss_pred             c------------cCC-CcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCcccccc
Q 013780          305 K------------FDI-SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV  371 (436)
Q Consensus       305 ~------------~~l-~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~  371 (436)
                      .            ..+ ++||.+++||+++++++.+++++.++ +++++ .||+||+++.++.....  ..+.+++|+|+
T Consensus       359 ~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~-~YG~TE~~~~~~~~~~~--~~~~~~vG~p~  434 (651)
T PLN02736        359 SPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLE-GYGMTETSCVISGMDEG--DNLSGHVGSPN  434 (651)
T ss_pred             CchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEE-EechHHhchheeccCCC--CCCCCccCCcc
Confidence            0            011 48999999999999999999999887 89999 99999998776655443  45778999999


Q ss_pred             CCcEEEEEeCCCCcc---CCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          372 AGVEAQIVSVDTLKP---LPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       372 ~~~~v~i~d~~~~~~---~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |+++++|+|.+++..   ..+++.|||+++||+++.|  ||++|+.|.+.|   ..+|||+|||+|+
T Consensus       435 pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~G--Y~~~~~~t~~~~---~~dgw~~TGDlg~  496 (651)
T PLN02736        435 PACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKG--YYKDEVQTREVI---DEDGWLHTGDIGL  496 (651)
T ss_pred             CceEEEEEEccccCcccCCCCCCCceEEecCCccccc--cccCHHHHHhhh---ccCCCeeccceEE
Confidence            999999999544322   2334579999999999999  999999999887   3578999999874

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=2.2e-54  Score=433.05  Aligned_cols=408  Identities=36%  Similarity=0.583  Sum_probs=335.1

Q ss_pred             CCcceeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 013780            7 GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA   86 (436)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~   86 (436)
                      ....++++..+....+..  +|+.+.+.++++++|+++|+++.++++.+||.||.++++++|+.|.+.|+++||+|++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~   82 (537)
T PLN02246          5 SEEFIFRSKLPDIYIPNH--LPLHDYCFERLSEFSDRPCLIDGATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLL   82 (537)
T ss_pred             cceeEecCCCCCCCCCCC--CcHHHHHHHHHHhCCCCeEEEecCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence            344677766555555554  899999999999999999999875568999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC--CCcEEeccCCcccccccccc
Q 013780           87 PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISR  164 (436)
Q Consensus        87 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  164 (436)
                      +|+++++++++||+++|++++|++|.++.+++..+++.++++++|++....+.+....  ....++..+.         .
T Consensus        83 ~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~---------~  153 (537)
T PLN02246         83 PNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDD---------P  153 (537)
T ss_pred             CCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCC---------C
Confidence            9999999999999999999999999999999999999999999999987766554432  1112222221         1


Q ss_pred             CcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHh----hhhccCCCCcEEEe
Q 013780          165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA----HQELVGELDHVVLC  240 (436)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~~~~~~~~  240 (436)
                      ......+.++.....  ...+.....++++++++|||||||.||+|+++|+++.........    .+.+  ..++++++
T Consensus       154 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~--~~~d~~l~  229 (537)
T PLN02246        154 PEGCLHFSELTQADE--NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF--HSDDVILC  229 (537)
T ss_pred             CCCceeHHHHhcCCC--CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCC--CCCcEEEE
Confidence            112233444443322  222233456789999999999999999999999999877554322    1222  23399999


Q ss_pred             chhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCC
Q 013780          241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAP  320 (436)
Q Consensus       241 ~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~  320 (436)
                      .+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+........++++|.+++||++
T Consensus       230 ~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~  309 (537)
T PLN02246        230 VLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAP  309 (537)
T ss_pred             eechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCc
Confidence            99999999987678889999999999999999999999999999999999999999988776666678899999999999


Q ss_pred             CcHHHHHHHHhhCCCCeeeeccccccccCCcccccCC---CCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEE
Q 013780          321 LGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENP---LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWV  397 (436)
Q Consensus       321 l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~---~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v  397 (436)
                      +++++.+.+++.+++..+++ .||+||++.+++....   .....+++++|+|+++++++|+|++++++++.|+.|||++
T Consensus       310 l~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v  388 (537)
T PLN02246        310 LGKELEDAFRAKLPNAVLGQ-GYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICI  388 (537)
T ss_pred             CCHHHHHHHHHHcCCCeEec-cccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEE
Confidence            99999999999998788999 9999999876543211   1113456789999999999999987899999999999999


Q ss_pred             ecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          398 RGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       398 ~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +|+.++.|  |+++|+.+.+.+   ..++||+|||+|+
T Consensus       389 ~g~~~~~G--Y~~~~~~~~~~~---~~~~~~~TGD~~~  421 (537)
T PLN02246        389 RGPQIMKG--YLNDPEATANTI---DKDGWLHTGDIGY  421 (537)
T ss_pred             ECCchhcc--ccCCchhhhhcc---cCCCCeeecceEE
Confidence            99999999  999999988766   3578999999764

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=5.3e-55  Score=436.47  Aligned_cols=387  Identities=21%  Similarity=0.255  Sum_probs=312.4

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.+.|.+.++++|++.++.+.. ...+||+||.++++++|+.|.+   .+||+|+|+++|++++++++|||+++|+++
T Consensus        19 ~~~~~~~~~~~~~~p~~~a~~~~~-~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~G~v~   94 (539)
T PRK06334         19 KTVLESFLKLCSEMTTATVCWDEQ-LGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLSGKIP   94 (539)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeCC-CCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhcCCee
Confidence            679999999999999999998763 3689999999999999999987   389999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC-----CcEEeccCCccccccccccCcccchhhHHhhhc---
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS---  178 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  178 (436)
                      +|+++.++.+++.++++.++++++++++.....+.....     ...++..+..         . ....+.+.....   
T Consensus        95 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~-~~~~~~~~~~~~~~~  164 (539)
T PRK06334         95 VMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEV---------R-KELSFWEKCRIGIYM  164 (539)
T ss_pred             EecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehh---------h-hhccHHHhhhhhhhh
Confidence            999999999999999999999999999877665543321     1111111100         0 000011110000   


Q ss_pred             -CCC----CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHH
Q 013780          179 -GSV----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI  253 (436)
Q Consensus       179 -~~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~  253 (436)
                       ...    .........++++++|+|||||||.||+|++||+++..+...........  .+|++++.+|++|.+++...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~h~~g~~~~  242 (539)
T PRK06334        165 SIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPK--EDDVMMSFLPPFHAYGFNSC  242 (539)
T ss_pred             cCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCC--CCceEEEecchHhhhhhHHH
Confidence             000    00112345678999999999999999999999999988766554444332  33999999999999999767


Q ss_pred             HHhhccCCcEEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhh
Q 013780          254 LYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKN  332 (436)
Q Consensus       254 ~~~~l~~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~  332 (436)
                      ++.++..|+++++.. ++++..+++.|+++++|++.++|+++..|++........+++||.+++||+++++++.+++++.
T Consensus       243 ~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~  322 (539)
T PRK06334        243 TLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKT  322 (539)
T ss_pred             HHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHH
Confidence            889999999998874 5799999999999999999999999999988766556678999999999999999999999999


Q ss_pred             CCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCCh
Q 013780          333 IPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFF  412 (436)
Q Consensus       333 ~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~  412 (436)
                      ++++.+++ .||+||++++++...... .....++|+|+++++++|+|++++.++++|+.|||+++|++++.|  ||++|
T Consensus       323 ~~~~~i~~-~YG~TE~~~~~~~~~~~~-~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~G--Y~~~~  398 (539)
T PRK06334        323 FPHIQLRQ-GYGTTECSPVITINTVNS-PKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSG--YLGED  398 (539)
T ss_pred             CCCCeEEe-cccccccCceEEeccCCC-CCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCccccc--ccCCc
Confidence            97799999 999999987666543332 344678999999999999997789999999999999999999999  99999


Q ss_pred             hhhhhhccccccCCeeecCCCCC
Q 013780          413 VFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       413 ~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +.+...  ..+.++||+|||+|+
T Consensus       399 ~~~~~~--~~~~~~w~~TGD~g~  419 (539)
T PRK06334        399 FGQGFV--ELGGETWYVTGDLGY  419 (539)
T ss_pred             ccccce--eeCCceeEECCCEEE
Confidence            865422  223467999999864

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=9.9e-56  Score=429.49  Aligned_cols=381  Identities=35%  Similarity=0.519  Sum_probs=303.8

Q ss_pred             HhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCC
Q 013780           33 LFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV  112 (436)
Q Consensus        33 l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~  112 (436)
                      |.++++++|+++|+++ +.++.+||+||+++++++|..|+++|+++|++|+|+++|+++++++++||+++|++++|++|.
T Consensus         1 f~~~a~~~pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~   79 (417)
T PF00501_consen    1 FERQAQRYPDRIALID-DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPS   79 (417)
T ss_dssp             HHHHHHHSTTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETT
T ss_pred             ChhHHhhCCCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccccc
Confidence            5789999999999999 448999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCcEEEE----ccchHHHHhhcC----CCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCC
Q 013780          113 YTVSELSKQVKDSNPKLVIT----VPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI  184 (436)
Q Consensus       113 ~~~~~~~~~l~~~~~~~vi~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (436)
                      ++.+++.++++.++++++|+    +......+....    ....++..+.           ......+.+.....  ...
T Consensus        80 ~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~~~  146 (417)
T PF00501_consen   80 LSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDR-----------DDLPKKEALKSASL--SDE  146 (417)
T ss_dssp             SSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESH-----------SSCTTCHHHHHHHH--CHC
T ss_pred             cccccccccccccceeEEEEeccccccccccchhhhcccccccccccccc-----------cccccccccccccc--ccc
Confidence            99999999999999999997    222222222221    1222222110           00011111111110  000


Q ss_pred             CCCC-CCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcE
Q 013780          185 PDVS-VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (436)
Q Consensus       185 ~~~~-~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  263 (436)
                      .... ..++++++++|||||||.||+|.++|+++++.+..+. .......+ |++++.+|++|.+|++..++.++..|++
T Consensus       147 ~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~-~~~~~~~~-d~~l~~~p~~~~~g~~~~~~~~l~~G~~  224 (417)
T PF00501_consen  147 PQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA-LPEYFGLG-DRILSFLPLSHIFGLISALLAALFSGAT  224 (417)
T ss_dssp             SHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH-HHHTTTTT-TEEEESS-TTSHHHHHHHHHHHHHCTSE
T ss_pred             cccCCCCccceeEeeccccccccccccccccccccccccccc-cccccccC-ceEEeecccccccccccccccccccccc
Confidence            0000 0568999999999999999999999999999977754 11111111 5999999999999997799999999999


Q ss_pred             EEEcCCCC---HHHHHHHHHHhcceEEEecHHHHHHHHhccccC----ccCCCcceEEEecCCCCcHHHHHHHHhhCCCC
Q 013780          264 VVSMGKFD---IEMALRAIEKYRVTVWWVVPPIILALAKNSLVR----KFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (436)
Q Consensus       264 v~~~~~~~---~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~----~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~  336 (436)
                      +++.+...   +..+++.++++++|+++++|+++..|++.....    ..++++||.+++||+++++++.+++++.++..
T Consensus       225 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~  304 (417)
T PF00501_consen  225 LVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNA  304 (417)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTS
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccc
Confidence            99998654   477899999999999999999999998843222    35788999999999999999999999999855


Q ss_pred             eeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhh
Q 013780          337 TIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTL  416 (436)
Q Consensus       337 ~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~  416 (436)
                      ++++ .||+||++.+++.........+.+++|+|+|+++++|+|+++++++++|+.|||+++|+.++.|  |+++|+.+.
T Consensus       305 ~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~g--y~~~~~~~~  381 (417)
T PF00501_consen  305 PIIN-LYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSG--YYNDPELTA  381 (417)
T ss_dssp             EEEE-EEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSE--ETTBHHHHH
T ss_pred             ccee-cccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCCcccee--eeccccccc
Confidence            9999 9999999998875532221457889999999999999998779999999999999999999999  999999999


Q ss_pred             hhccccccCCeeecCCCCC
Q 013780          417 FLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       417 ~~~~~~~~~~~~~tgD~~~  435 (436)
                      +.|.   ++|||+|||+|+
T Consensus       382 ~~~~---~~~~~~TGD~g~  397 (417)
T PF00501_consen  382 EAFI---DDGWYRTGDLGR  397 (417)
T ss_dssp             HHEE---TTSEEEEEEEEE
T ss_pred             cccc---cccceecceEEE
Confidence            9883   357999999874

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=7.4e-54  Score=429.97  Aligned_cols=411  Identities=31%  Similarity=0.506  Sum_probs=332.3

Q ss_pred             CCcceeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 013780            7 GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA   86 (436)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~   86 (436)
                      ++..+++++.+....+.  .+|+.+.|.+.++++|+++|+++...++.+||.||.+++.++|+.|.+.|+++||+|++++
T Consensus        10 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~   87 (546)
T PLN02330         10 DNEHIFRSRYPSVPVPD--KLTLPDFVLQDAELYADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVL   87 (546)
T ss_pred             ccceeeccCCCCCCCCC--CCcHHHHHhhhhhcCCCccEEEecCCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence            44567777766644333  4899999999999999999999765568999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCc
Q 013780           87 PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSS  166 (436)
Q Consensus        87 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (436)
                      +|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+.......+++...          ...
T Consensus        88 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~----------~~~  157 (546)
T PLN02330         88 PNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEE----------KIE  157 (546)
T ss_pred             CCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCC----------CCC
Confidence            9999999999999999999999999999999999999999999999998877776654443332211          111


Q ss_pred             ccchhhHHhhhcCCC-CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHH
Q 013780          167 KIVSFHDLIELSGSV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (436)
Q Consensus       167 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~  245 (436)
                      ....+.+++...... .........++++++++|||||||.||+|.++|+++..+...............+..+..+|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~  237 (546)
T PLN02330        158 GAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFF  237 (546)
T ss_pred             CcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChH
Confidence            223455555433211 1112233457889999999999999999999999998764321111111111126889999999


Q ss_pred             HHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCC--cceEEEecCCCCcH
Q 013780          246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDIS--SLKLVGSGAAPLGK  323 (436)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~--~lr~i~~gg~~l~~  323 (436)
                      |.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......++.  ++|.+++||+++++
T Consensus       238 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~  317 (546)
T PLN02330        238 HIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAP  317 (546)
T ss_pred             HHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCH
Confidence            9999887788999999999999999999999999999999999999999999886554444444  57999999999999


Q ss_pred             HHHHHHHhhCCCCeeeeccccccccCCcccccC-CCC--CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecC
Q 013780          324 ELMEDCQKNIPGATIFQVGYGMTETCAPISLEN-PLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP  400 (436)
Q Consensus       324 ~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~-~~~--~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~  400 (436)
                      ++.+++++.|+++++++ .||+||++++..... +..  ...+.+++|+|+|+++++|+|+++++++++|+.|||+++|+
T Consensus       318 ~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~  396 (546)
T PLN02330        318 ELLTAFEAKFPGVQVQE-AYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQ  396 (546)
T ss_pred             HHHHHHHHHcCCCeEEe-cccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecc
Confidence            99999999997799999 999999876543321 111  12455789999999999999987899999999999999999


Q ss_pred             CcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          401 NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       401 ~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .++.|  |+++++.+.+.+   +.++||+|||+|+
T Consensus       397 ~~~~g--y~~~~~~~~~~~---~~~g~~~TGD~~~  426 (546)
T PLN02330        397 CVMQG--YYNNKEETDRTI---DEDGWLHTGDIGY  426 (546)
T ss_pred             hhhhh--hccCccchhhhc---cCCCceecccEEE
Confidence            99999  999999988765   3578999999864

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=3.1e-54  Score=441.33  Aligned_cols=398  Identities=22%  Similarity=0.266  Sum_probs=302.9

Q ss_pred             CchHHHHhhhcccCCCceEEEeC----------CCC-----------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDA----------DSD-----------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF   85 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~----------~~~-----------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~   85 (436)
                      .|+.++|.+.++++|+++|+.+.          .++           ..+||+|+.++++++|+.|.++|+++||+|+|+
T Consensus        58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~  137 (696)
T PLN02387         58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF  137 (696)
T ss_pred             CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence            78999999999999999999432          012           238999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCcccccc
Q 013780           86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSG  160 (436)
Q Consensus        86 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  160 (436)
                      ++|+++|+++++||+++|+++||+++.++.+++.++++.++++++|++.+..+.+....     .+.++...+.......
T Consensus       138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~  217 (696)
T PLN02387        138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDS  217 (696)
T ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhh
Confidence            99999999999999999999999999999999999999999999999987766654432     2223322221100000


Q ss_pred             --ccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhh-hccCCCCcE
Q 013780          161 --LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ-ELVGELDHV  237 (436)
Q Consensus       161 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~  237 (436)
                        .......+.+|+++...+.. .........++++++|+|||||||.||||++||+++..++....... .+  ..+|+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~--~~~d~  294 (696)
T PLN02387        218 SLSGSSNWTVSSFSEVEKLGKE-NPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKL--GKNDV  294 (696)
T ss_pred             hhhccCCcEEEEHHHHHHhhcc-CCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCC--CCCCE
Confidence              00011123456666654432 11122334679999999999999999999999999998876654332 12  23399


Q ss_pred             EEechhHHHHHHHHHHHHhhccCCcEEEEcCCCC--------HHHHHHHHHHhcceEEEecHHHHHHHHhccccC-----
Q 013780          238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD--------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVR-----  304 (436)
Q Consensus       238 ~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~--------~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~-----  304 (436)
                      +++.+|++|.+++. ..+.++..|+++.+..+..        +..++..+++++||++.++|.++..+.+.....     
T Consensus       295 ~l~~lPl~Hi~~~~-~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~  373 (696)
T PLN02387        295 YLAYLPLAHILELA-AESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKG  373 (696)
T ss_pred             EEEECcHHHHHHHH-HHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhccc
Confidence            99999999999986 4444566777776543321        234567899999999999999999886531100     


Q ss_pred             ------------------------------------------ccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780          305 ------------------------------------------KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG  342 (436)
Q Consensus       305 ------------------------------------------~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~  342 (436)
                                                                ....+++|.+++||+++++++.+.++..++ +++++ +
T Consensus       374 ~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g-~~v~~-~  451 (696)
T PLN02387        374 GLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLG-APIGQ-G  451 (696)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcC-CCeeE-e
Confidence                                                      000158999999999999999988888886 99999 9


Q ss_pred             ccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCC-ccC--CCCCceEEEEecCCcccCccccCChhhhhhhc
Q 013780          343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL-KPL--PPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW  419 (436)
Q Consensus       343 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~-~~~--~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~  419 (436)
                      ||+||+++.++.....  +...+++|+|+|+++++|+|.+++ ..+  .++..|||+++|++++.|  ||++|+.|.+.|
T Consensus       452 YG~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~G--Y~~~pe~T~~~f  527 (696)
T PLN02387        452 YGLTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLG--YFKNQEKTDEVY  527 (696)
T ss_pred             echhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccch--hcCCHHHHhhhh
Confidence            9999998776655443  456789999999999999995343 322  244579999999999999  999999999987


Q ss_pred             cccccC--CeeecCCCCC
Q 013780          420 GCEHTD--SFIRGKDQQT  435 (436)
Q Consensus       420 ~~~~~~--~~~~tgD~~~  435 (436)
                      .. +.+  +||+|||+|+
T Consensus       528 ~~-d~~G~~W~~TGDig~  544 (696)
T PLN02387        528 KV-DERGMRWFYTGDIGQ  544 (696)
T ss_pred             cc-ccCCCceeecCceEE
Confidence            21 123  4999999874

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=6.6e-54  Score=435.16  Aligned_cols=398  Identities=22%  Similarity=0.297  Sum_probs=309.6

Q ss_pred             eeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEEeCC-C--CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 013780           11 IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDAD-S--DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP   87 (436)
Q Consensus        11 ~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~-~--~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~   87 (436)
                      .+++.++....+    .|+.+.|.++++++|+++|+++.+ .  .+.+||+||.++++++|+.|.+.|+++||+|+++++
T Consensus        27 ~~~~~~~~~~~~----~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~  102 (614)
T PRK08180         27 YLRSAEPLGDYP----RRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSG  102 (614)
T ss_pred             EEecCCCCCCcC----ccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecC
Confidence            344454444443    679999999999999999998752 1  268999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHhCCeEeecCCCCC-----HHHHHHHHHhcCCcEEEEccc--hHHHHhhcCC-CcEEeccCCccccc
Q 013780           88 NSIHFPICFLGVIAIGAIASTANPVYT-----VSELSKQVKDSNPKLVITVPE--LWDKVKDLNL-PAVLLGSKDKVSSS  159 (436)
Q Consensus        88 n~~~~~~~~lA~~~~G~~~v~l~~~~~-----~~~~~~~l~~~~~~~vi~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~  159 (436)
                      |++++++++|||+++|++++|++|.++     .+++.++++.++++++|+++.  ....+..... ...++..+..    
T Consensus       103 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~----  178 (614)
T PRK08180        103 NSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGA----  178 (614)
T ss_pred             CCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCC----
Confidence            999999999999999999999999988     799999999999999999864  2222222111 1111111100    


Q ss_pred             cccccCcccchhhHHhhhcCCCC-CCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEE
Q 013780          160 GLISRSSKIVSFHDLIELSGSVT-DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV  238 (436)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~  238 (436)
                         ........+.++........ ........++++++|+|||||||.||+|++||+++..++......+.......+++
T Consensus       179 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~  255 (614)
T PRK08180        179 ---VPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVL  255 (614)
T ss_pred             ---CCCcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEE
Confidence               00111234555544321100 11112345789999999999999999999999999988776555544432234899


Q ss_pred             EechhHHHHHHHHHHHHhhccCCcEEEEcC-CCCH---HHHHHHHHHhcceEEEecHHHHHHHHhcccc----CccCCCc
Q 013780          239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDI---EMALRAIEKYRVTVWWVVPPIILALAKNSLV----RKFDISS  310 (436)
Q Consensus       239 ~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~-~~~~---~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~----~~~~l~~  310 (436)
                      ++.+|++|.+++...++.++..|+++++.+ .+++   ..+++.++++++|+++++|+++..|.+....    ....+++
T Consensus       256 l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~  335 (614)
T PRK08180        256 VDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSR  335 (614)
T ss_pred             EEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccc
Confidence            999999999998777889999999999875 3443   5678899999999999999999988764322    2345789


Q ss_pred             ceEEEecCCCCcHHHHHHHHhh----CC-CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCc
Q 013780          311 LKLVGSGAAPLGKELMEDCQKN----IP-GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK  385 (436)
Q Consensus       311 lr~i~~gg~~l~~~~~~~~~~~----~~-~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~  385 (436)
                      ||.+++||+++++++.+++++.    ++ ++++++ .||+||++++++.....  ..+++++|+|+|+++++|+|+    
T Consensus       336 lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~-~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d~----  408 (614)
T PRK08180        336 LKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMT-GLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVPV----  408 (614)
T ss_pred             eeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeee-eecccccCCceEecccc--cCCCCcccCccCCcEEEEecC----
Confidence            9999999999999999999875    33 367899 99999998766654433  456789999999999999984    


Q ss_pred             cCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          386 PLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       386 ~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                          |..|||+++|++++.|  ||++|+.+.+.|   +.+|||+|||+|+
T Consensus       409 ----~~~GEi~vrg~~v~~G--Y~~~p~~t~~~~---~~dgw~~TGDlg~  449 (614)
T PRK08180        409 ----GGKLEVRVKGPNVTPG--YWRAPELTAEAF---DEEGYYRSGDAVR  449 (614)
T ss_pred             ----CCCcEEEEecCccchh--hcCChhHhHhhc---ccCCceeccceEE
Confidence                3459999999999999  999999999877   3578999999875

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.6e-54  Score=431.28  Aligned_cols=381  Identities=21%  Similarity=0.253  Sum_probs=315.6

Q ss_pred             chHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEe
Q 013780           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (436)
Q Consensus        28 ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v  107 (436)
                      ++.++|.+.++++|+++|+++.  +..+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++
T Consensus        50 ~~~~~~~~~a~~~pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v  127 (549)
T PRK07788         50 PFAGLVAHAARRAPDRAALIDE--RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARII  127 (549)
T ss_pred             hHHHHHHHHHHHCCCceEEEEC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEE
Confidence            7999999999999999999987  68999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC---CcEEeccCCccccccccccCcccchhhHHhhhcCCCCCC
Q 013780          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI  184 (436)
Q Consensus       108 ~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (436)
                      |+++.++.+++.++++.++++++|+++.....+.....   ....+.......    .....++..++++.....  .  
T Consensus       128 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~--  199 (549)
T PRK07788        128 LLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDD----EPSGSTDETLDDLIAGSS--T--  199 (549)
T ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCcc----ccCCcCcccHHHHhcCCC--C--
Confidence            99999999999999999999999999877666544321   111111100000    011134556777665432  1  


Q ss_pred             CCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEE
Q 013780          185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV  264 (436)
Q Consensus       185 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v  264 (436)
                      .......++.++++|||||||.||+|+++|.++............+..  .+++++..|++|.+|+. .++.++..|+++
T Consensus       200 ~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~  276 (549)
T PRK07788        200 APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRA--GETTLLPAPMFHATGWA-HLTLAMALGSTV  276 (549)
T ss_pred             CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCc--CCeEEEccchHHHHHHH-HHHHHHHhCCEE
Confidence            111234567899999999999999999999999887666555444433  38999999999999996 567789999999


Q ss_pred             EEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780          265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG  342 (436)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~  342 (436)
                      ++...+++..+++.++++++|++.++|+++..|.+....  ...++++||.+++||+++++++.+++++.++ ..+++ .
T Consensus       277 v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~~-~  354 (549)
T PRK07788        277 VLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG-PVLYN-L  354 (549)
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhC-cccee-c
Confidence            999889999999999999999999999999999887654  4556889999999999999999999999997 88999 9


Q ss_pred             ccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780          343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  422 (436)
Q Consensus       343 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~  422 (436)
                      ||+||++..+.... ......++++|+|+++++++|+|+ ++++++.|+.|||+++|+.++.|  |+++++.  ..    
T Consensus       355 YG~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~g~~~~~g--Y~~~~~~--~~----  424 (549)
T PRK07788        355 YGSTEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILDE-NGNEVPRGVVGRIFVGNGFPFEG--YTDGRDK--QI----  424 (549)
T ss_pred             cCcchhchhhccCh-hhhhhcCCCcccCCCCcEEEEECC-CcCCCCCCCeEEEEEeCCCcccc--ccCCCcc--cc----
Confidence            99999876554332 211346789999999999999995 89999999999999999999999  9998875  22    


Q ss_pred             ccCCeeecCCCC
Q 013780          423 HTDSFIRGKDQQ  434 (436)
Q Consensus       423 ~~~~~~~tgD~~  434 (436)
                       .+|||+|||+|
T Consensus       425 -~~g~~~TGDl~  435 (549)
T PRK07788        425 -IDGLLSSGDVG  435 (549)
T ss_pred             -cCCceecCceE
Confidence             36799999976

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.4e-53  Score=425.75  Aligned_cols=398  Identities=29%  Similarity=0.436  Sum_probs=329.1

Q ss_pred             CCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 013780           25 PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (436)
Q Consensus        25 ~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~gd~V~l~~~n~~~~~~~~lA~~~~G  103 (436)
                      ++.|+.+.|.+.++++|+++|+++.  ++.+||+||.+++.++|+.|.+. |+++|++|+++++|+++++++++||+++|
T Consensus         8 ~~~tl~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G   85 (546)
T PRK08314          8 PETSLFHNLEVSARRYPDKTAIVFY--GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRAN   85 (546)
T ss_pred             CCCCHHHHHHHHHHHcCCCcceeec--CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcC
Confidence            3478999999999999999999987  68999999999999999999998 99999999999999999999999999999


Q ss_pred             CeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEecc-CCccccc-cc-------------ccc
Q 013780          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGS-KDKVSSS-GL-------------ISR  164 (436)
Q Consensus       104 ~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~-~~-------------~~~  164 (436)
                      ++++|++|..+.+++.++++.+++++++++......+....    .+.+++.. ....... ..             .-.
T Consensus        86 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (546)
T PRK08314         86 AVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALA  165 (546)
T ss_pred             cEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCccccccccccccccc
Confidence            99999999999999999999999999999987766554431    12222211 0000000 00             000


Q ss_pred             CcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhH
Q 013780          165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM  244 (436)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~  244 (436)
                      ..++..+++......   ........++++++|+|||||||.||+|.++|++++.++........+.  ..|++++.+|+
T Consensus       166 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~--~~d~~l~~~p~  240 (546)
T PRK08314        166 PGGVVAWKEALAAGL---APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNST--PESVVLAVLPL  240 (546)
T ss_pred             ccccccHHHHhcccC---CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCC--CCceEEEEcCc
Confidence            112334444443221   1123345678999999999999999999999999998877655554443  33999999999


Q ss_pred             HHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHH
Q 013780          245 FHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE  324 (436)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~  324 (436)
                      +|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......+++++|.+++||++++++
T Consensus       241 ~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~  320 (546)
T PRK08314        241 FHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEA  320 (546)
T ss_pred             hHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHH
Confidence            99999987889999999999999999999999999999999999999999999887665666788999999999999999


Q ss_pred             HHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCccc
Q 013780          325 LMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP  404 (436)
Q Consensus       325 ~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~  404 (436)
                      +.+++.+.++ .++++ .||+||++.........  ..+..++|.|+++++++|+|+++++.++.|+.|||+++|++++.
T Consensus       321 ~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~  396 (546)
T PRK08314        321 VAERLKELTG-LDYVE-GYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFK  396 (546)
T ss_pred             HHHHHHHHcC-CcEEe-cccccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhc
Confidence            9999999997 89999 99999998776655443  34568999999999999999888999999999999999999999


Q ss_pred             CccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          405 GIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       405 g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |  |+++++.+.+.|-.+...+||+|||+|+
T Consensus       397 g--Y~~~~~~t~~~f~~~~~~~~~~TGDl~~  425 (546)
T PRK08314        397 G--YWNRPEATAEAFIEIDGKRFFRTGDLGR  425 (546)
T ss_pred             c--ccCChhHhhhhhhhcCCCceEecCCEEE
Confidence            9  9999999988774333446999999863

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.6e-53  Score=434.72  Aligned_cols=408  Identities=21%  Similarity=0.265  Sum_probs=312.4

Q ss_pred             CCcCCCCCCCchHHHH-hhhcc-cCCCceEEEeCC----CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCc
Q 013780           18 PLVLPSDPSFSMVHFL-FRNSA-SYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH   91 (436)
Q Consensus        18 ~~~~~~~~~~ti~~~l-~~~~~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~   91 (436)
                      ..|+++. ..|+...+ .++++ .+|+++|+++..    ..+.+||+||.+++.++|+.|++.|+++||+|+|+++|+++
T Consensus        79 ~~wf~g~-~~N~~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e  157 (666)
T PLN02654         79 IEWFKGG-KTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLME  157 (666)
T ss_pred             ccccCCC-EeeHHHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence            4566653 47775544 45554 589999998742    13689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHh-------------hcC---CC-cEEeccCC
Q 013780           92 FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK-------------DLN---LP-AVLLGSKD  154 (436)
Q Consensus        92 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~-------------~~~---~~-~~~~~~~~  154 (436)
                      +++++|||+++|++++|+++.++.+++.+++++++++++|+++......+             ...   .. ..++....
T Consensus       158 ~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (666)
T PLN02654        158 LPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYEN  237 (666)
T ss_pred             HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecc
Confidence            99999999999999999999999999999999999999999876432111             000   00 01111010


Q ss_pred             cccc--ccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhh-hhhHHhhhhcc
Q 013780          155 KVSS--SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMISAHQELV  231 (436)
Q Consensus       155 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~  231 (436)
                      ....  ............++++....+  .........++++++|+|||||||.||||+++|++++.. .........+ 
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~-  314 (666)
T PLN02654        238 QLAMKREDTKWQEGRDVWWQDVVPNYP--TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDY-  314 (666)
T ss_pred             cccccccccccccCCcccHHHHhhcCC--CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCC-
Confidence            0000  000000001122444432221  111223356799999999999999999999999998643 2333333333 


Q ss_pred             CCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCc
Q 013780          232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRK  305 (436)
Q Consensus       232 ~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~  305 (436)
                       ..+|++++..|++|++|....++.+|..|+++++.++    +++..+++.|+++++|+++++|+++..|.+...  ...
T Consensus       315 -~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~  393 (666)
T PLN02654        315 -KPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTR  393 (666)
T ss_pred             -CCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcccccc
Confidence             2339999999999999988778999999999999853    479999999999999999999999999988653  234


Q ss_pred             cCCCcceEEEecCCCCcHHHHHHHHhhCCC--CeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCC
Q 013780          306 FDISSLKLVGSGAAPLGKELMEDCQKNIPG--ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT  383 (436)
Q Consensus       306 ~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~--~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~  383 (436)
                      .++++||.++++|+++++++.+++.+.++.  +++.+ .||+||+++......+.....+++++|+|++|++++|+| ++
T Consensus       394 ~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~-~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~  471 (666)
T PLN02654        394 HSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD-TWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EK  471 (666)
T ss_pred             CChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceec-cccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CC
Confidence            578899999999999999999999999974  67889 999999987666544432245788999999999999999 48


Q ss_pred             CccCCCCCceEEEEec--CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          384 LKPLPPNQLGEIWVRG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       384 ~~~~~~g~~Gel~v~g--~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |++++.++.|||++++  |+++.|  ||++++.+...+- -.-+|||+|||+|+
T Consensus       472 g~~~~~~~~Gel~v~~~~p~~~~g--y~~~~~~~~~~~~-~~~~g~~~TGD~~~  522 (666)
T PLN02654        472 GKEIEGECSGYLCVKKSWPGAFRT--LYGDHERYETTYF-KPFAGYYFSGDGCS  522 (666)
T ss_pred             CCCCCCCCceEEEEcCCCchhhhh--hcCChHHHHHhhh-hcCCCEEEeCceEE
Confidence            8999988999999999  789999  9999998877541 11267999999873

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.3e-53  Score=431.99  Aligned_cols=396  Identities=27%  Similarity=0.362  Sum_probs=311.6

Q ss_pred             CchHHHHhhhcccCCCceEEEeCC------CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013780           27 FSMVHFLFRNSASYSSKLALIDAD------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI  100 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~------~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~  100 (436)
                      .|+.++|.+.++++|+++|+++..      ..+++||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus        25 ~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~  104 (632)
T PRK07529         25 ASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGE  104 (632)
T ss_pred             CCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            679999999999999999998631      24799999999999999999999999999999999999999999999999


Q ss_pred             HhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccch-----HHHHhh----cC-CCcEEeccCCcccccc--c------c
Q 013780          101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL-----WDKVKD----LN-LPAVLLGSKDKVSSSG--L------I  162 (436)
Q Consensus       101 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~----~~-~~~~~~~~~~~~~~~~--~------~  162 (436)
                      ++| +++|+++.++.+++.++++.++++++|++...     .+.+..    .. .+.++...........  .      .
T Consensus       105 ~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  183 (632)
T PRK07529        105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRR  183 (632)
T ss_pred             HhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccccccccccc
Confidence            999 56999999999999999999999999997543     222211    11 1222221111000000  0      0


Q ss_pred             ccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEech
Q 013780          163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL  242 (436)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  242 (436)
                      ....++..+.+.+...............++++++++|||||||.||+|.+||+++..++........+.  .++++++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~  261 (632)
T PRK07529        184 KAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLG--PGDTVFCGL  261 (632)
T ss_pred             ccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCC--CCCEEEEec
Confidence            012234456665554432112222334678999999999999999999999999998876655544442  339999999


Q ss_pred             hHHHHHHHHHHHHhhccCCcEEEEcCCC---C---HHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEe
Q 013780          243 PMFHVFGLSVILYDQLQKGNCVVSMGKF---D---IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS  316 (436)
Q Consensus       243 p~~~~~g~~~~~~~~l~~G~~v~~~~~~---~---~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~  316 (436)
                      |++|.+++...++.++..|+++++.++.   +   ...+++.++++++|++.++|+++..|.+.... ..++++||.+++
T Consensus       262 pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~~~~~slr~v~~  340 (632)
T PRK07529        262 PLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-GHDISSLRYALC  340 (632)
T ss_pred             CchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-CCCccceEEEEE
Confidence            9999999987899999999999998532   1   36788999999999999999999999887543 346889999999


Q ss_pred             cCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeC-CCC---ccCCCCCc
Q 013780          317 GAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSV-DTL---KPLPPNQL  392 (436)
Q Consensus       317 gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~-~~~---~~~~~g~~  392 (436)
                      ||+++++++.+++++.++ +++++ .||+||+++++...... ...+.+++|+|+|+++++|+.. +++   +++++|+.
T Consensus       341 gg~~l~~~l~~~~~~~~g-~~l~~-~YG~TE~~~~~~~~~~~-~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~  417 (632)
T PRK07529        341 GAAPLPVEVFRRFEAATG-VRIVE-GYGLTEATCVSSVNPPD-GERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEV  417 (632)
T ss_pred             cCCCCCHHHHHHHHHHhC-CcEee-eecccccCcccccCCcc-ccccCCCcccccCCceEEEEEcCCCCcccccCCCCCc
Confidence            999999999999999996 99999 99999998776655433 2447889999999999999632 356   78999999


Q ss_pred             eEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          393 GEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       393 Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |||+++|++++.|  |+++++. ...|   ..++||+|||+|+
T Consensus       418 Gel~v~gp~v~~G--Y~~~~~~-~~~~---~~~gw~~TGDlg~  454 (632)
T PRK07529        418 GVLCIAGPNVFSG--YLEAAHN-KGLW---LEDGWLNTGDLGR  454 (632)
T ss_pred             eEEEEECCCcccc--ccCCccc-cccc---cCCCceEcCcEEE
Confidence            9999999999999  9986643 3333   2578999999874

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.5e-53  Score=428.94  Aligned_cols=392  Identities=25%  Similarity=0.294  Sum_probs=307.4

Q ss_pred             CCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 013780           23 SDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (436)
Q Consensus        23 ~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~  102 (436)
                      +.-+.|+.++|.+.++++|+++|+++.  ++.+||+||.++++++|+.|.++|+++||+|+|+++|+++++++++||+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~   80 (563)
T PLN02860          3 NHSQAHICQCLTRLATLRGNAVVTISG--NRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACA   80 (563)
T ss_pred             chhhhHHHHHHHHHHHhcCCceEEecC--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhc
Confidence            344588999999999999999999876  689999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhc-----C-CCcEEeccCCccccccccccCcccchhhHHhh
Q 013780          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL-----N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus       103 G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      |++++|+++.++.+++.+++++++++++++++.........     . .+..+...+ .... . ......+...+++..
T Consensus        81 Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~-~-~~~~~~~~~~~~~~~  157 (563)
T PLN02860         81 GGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLES-PSSS-V-FIFLNSFLTTEMLKQ  157 (563)
T ss_pred             cEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecC-cccc-c-ccchhhccccchhcc
Confidence            99999999999999999999999999999987542222111     1 111121111 0000 0 000001111111111


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHh
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~  256 (436)
                      .... .........++++++++|||||||.||+|+++|+++..+.........+..  .|+++..+|++|.+++. .++.
T Consensus       158 ~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~--~d~~l~~~pl~h~~g~~-~~~~  233 (563)
T PLN02860        158 RALG-TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGE--DDVYLHTAPLCHIGGLS-SALA  233 (563)
T ss_pred             Cccc-cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCC--CCEEEEecCchhhccHH-HHHH
Confidence            1000 011112335789999999999999999999999999877665444444433  39999999999999986 6889


Q ss_pred             hccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcceEEEecCCCCcHHHHHHHHhhCC
Q 013780          257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIP  334 (436)
Q Consensus       257 ~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~  334 (436)
                      ++..|+++++.+++++..+++.++++++|++.++|+++..|.+....  ....+++||.+++||+++++++.++|++.|+
T Consensus       234 ~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~  313 (563)
T PLN02860        234 MLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFP  313 (563)
T ss_pred             HHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999876432  2346789999999999999999999999997


Q ss_pred             CCeeeeccccccccCCcccccCCCCC---------------------ccCcCccccccCCcEEEEEeCCCCccCCCCCce
Q 013780          335 GATIFQVGYGMTETCAPISLENPLVG---------------------VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG  393 (436)
Q Consensus       335 ~~~i~~~~YG~tE~~~~~~~~~~~~~---------------------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~G  393 (436)
                      +.++++ .||+||+++.++.......                     .....++|+|+|+++++|++++      +|+.|
T Consensus       314 ~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~G  386 (563)
T PLN02860        314 NAKLFS-AYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVG  386 (563)
T ss_pred             CCceec-CCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCcee
Confidence            799999 9999999765543221100                     1112378999999999999853      68899


Q ss_pred             EEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          394 EIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       394 el~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ||+++|+.++.|  ||++|+.+.+.+   ..+|||+|||+|+
T Consensus       387 el~v~g~~~~~G--Y~~~~~~t~~~~---~~~g~~~TGDl~~  423 (563)
T PLN02860        387 RILTRGPHVMLG--YWGQNSETASVL---SNDGWLDTGDIGW  423 (563)
T ss_pred             EEEEecCccccc--ccCCccccchhc---cCCCeEEccceEE
Confidence            999999999999  999999988766   3578999999864

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=9.2e-53  Score=428.04  Aligned_cols=416  Identities=20%  Similarity=0.218  Sum_probs=311.2

Q ss_pred             CcceeecCCCCCcCCC--CCCCchHHHHhhhcccCCCceEEEeCC---C--C--ccccHHHHHHHHHHHHHHHHhcCCCC
Q 013780            8 RDGIYRSLRPPLVLPS--DPSFSMVHFLFRNSASYSSKLALIDAD---S--D--ESLSFSQFKSIVIKVSHSFRHLGITK   78 (436)
Q Consensus         8 ~~~~~~~~~~~~~~~~--~~~~ti~~~l~~~~~~~p~~~a~~~~~---~--~--~~~Ty~el~~~~~~la~~L~~~gv~~   78 (436)
                      +..++|........+.  ....|+.++|.+.++++|+++|+....   .  +  .++||+|+.++++++|+.|.+.|+++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~  100 (660)
T PLN02430         21 VGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEP  100 (660)
T ss_pred             CCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCC
Confidence            5666776433222211  123789999999999999999996431   1  1  35799999999999999999999999


Q ss_pred             CCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchH-HHHhhc-----CCCcEEecc
Q 013780           79 KDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW-DKVKDL-----NLPAVLLGS  152 (436)
Q Consensus        79 gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~-~~~~~~-----~~~~~~~~~  152 (436)
                      ||+|+|+++|+++|+++++||+++|+++||+++.++.+++.++++.++++++|+++... +.+...     ..+.++...
T Consensus       101 gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~  180 (660)
T PLN02430        101 GSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT  180 (660)
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999987543 222221     122222221


Q ss_pred             CCcccc-ccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhc-
Q 013780          153 KDKVSS-SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-  230 (436)
Q Consensus       153 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~-  230 (436)
                      +..... ...........++++++..+.... .......++++++|+|||||||.||||++||+++..++......... 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~  259 (660)
T PLN02430        181 SVTEEESDKASQIGVKTYSWIDFLHMGKENP-SETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQF  259 (660)
T ss_pred             CCChHHhhhhhcCCcEEEEHHHHHHhhccCC-CCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhcccc
Confidence            100000 000000112345666665443211 11223457899999999999999999999999998876654332211 


Q ss_pred             --cCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc-----
Q 013780          231 --VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV-----  303 (436)
Q Consensus       231 --~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~-----  303 (436)
                        ....+|++++.+|++|.++... .+.++..|+++.+... ++..+++.|++++||++.++|.+++.+.+....     
T Consensus       260 ~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~  337 (660)
T PLN02430        260 EDKMTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQEL  337 (660)
T ss_pred             ccCCCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhcc
Confidence              1123399999999999999874 4567889999987753 788999999999999999999999887642100     


Q ss_pred             --------------------------Ccc--------------CCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          304 --------------------------RKF--------------DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       304 --------------------------~~~--------------~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                                                ...              ..++||.+++||+++++++.+.++ .+++..+++ +|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~-~Y  415 (660)
T PLN02430        338 NPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQ-GY  415 (660)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeee-ec
Confidence                                      000              015899999999999999876655 444478999 99


Q ss_pred             cccccCCcccccCCCCCccCcCccccccCCcEEEEEe-CCCC-ccCCCCCceEEEEecCCcccCccccCChhhhhhhccc
Q 013780          344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVS-VDTL-KPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC  421 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~  421 (436)
                      |+||+++.++...+.. ...++++|+|.++++++++| ++.+ .+++.+..|||+|+|++++.|  ||++|+.|.+.|  
T Consensus       416 G~TE~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~G--Y~~~~e~t~~~~--  490 (660)
T PLN02430        416 GLTETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSG--YYKNPELTEEVM--  490 (660)
T ss_pred             chhhhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCcccc--ccCChHHhhhhh--
Confidence            9999987766554432 34578999999999999987 3333 455666789999999999999  999999999988  


Q ss_pred             cccCCeeecCCCCC
Q 013780          422 EHTDSFIRGKDQQT  435 (436)
Q Consensus       422 ~~~~~~~~tgD~~~  435 (436)
                        .+|||+|||+|+
T Consensus       491 --~dGw~~TGDig~  502 (660)
T PLN02430        491 --KDGWFHTGDIGE  502 (660)
T ss_pred             --hccceeccceEE
Confidence              588999999874

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.9e-53  Score=434.27  Aligned_cols=393  Identities=19%  Similarity=0.256  Sum_probs=303.9

Q ss_pred             CchHHHHhhhcccCCCceEEEeCC-------------------------CCccccHHHHHHHHHHHHHHHHhcCCCCCCE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDAD-------------------------SDESLSFSQFKSIVIKVSHSFRHLGITKKDV   81 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~-------------------------~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~   81 (436)
                      .|+.++|.++++++|+++|+.+..                         ..+++||+||.++++++|+.|.++|+++||+
T Consensus        69 ~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~  148 (700)
T PTZ00216         69 PNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSN  148 (700)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence            689999999999999999998741                         2478999999999999999999999999999


Q ss_pred             EEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCcc
Q 013780           82 VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKV  156 (436)
Q Consensus        82 V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~  156 (436)
                      |+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++......+....     ....++..+...
T Consensus       149 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~~~  228 (700)
T PTZ00216        149 VAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLP  228 (700)
T ss_pred             EEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECCCc
Confidence            999999999999999999999999999999999999999999999999999876654442211     111222222110


Q ss_pred             ccccccccCcccchhhHHhhhcCC--CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhc--cC
Q 013780          157 SSSGLISRSSKIVSFHDLIELSGS--VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL--VG  232 (436)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~  232 (436)
                      .  ..........++++++..+..  ..........++++++|+|||||||.||||++||+|+.+++.........  ..
T Consensus       229 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~  306 (700)
T PTZ00216        229 A--SVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGP  306 (700)
T ss_pred             c--ccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCC
Confidence            0  000112234567777655421  01112234468899999999999999999999999999887665433211  11


Q ss_pred             -CCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHH-------HHHHhcceEEEecHHHHHHHHhcccc-
Q 013780          233 -ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR-------AIEKYRVTVWWVVPPIILALAKNSLV-  303 (436)
Q Consensus       233 -~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~-------~l~~~~~t~l~~~p~~~~~l~~~~~~-  303 (436)
                       ..++++++.+|++|.+++. .....+..|+++.+.   ++..+.+       .++++++|++.++|.+++.+.+.... 
T Consensus       307 ~~~~d~~ls~lPl~H~~~~~-~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~  382 (700)
T PTZ00216        307 PEEDETYCSYLPLAHIMEFG-VTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAK  382 (700)
T ss_pred             CCCCCEEEEEChHHHHHHHH-HHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHH
Confidence             2348999999999999986 455567888888774   4555554       68899999999999999887642110 


Q ss_pred             ------------------------Cc----------------cCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          304 ------------------------RK----------------FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       304 ------------------------~~----------------~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                                              .+                ...+++|.+++||+++++++.++++..++  ++++ +|
T Consensus       383 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~-~Y  459 (700)
T PTZ00216        383 LPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQ-GW  459 (700)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh--hHhh-cc
Confidence                                    00                00158999999999999999988877764  8999 99


Q ss_pred             cccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCC-ccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780          344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL-KPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  422 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~-~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~  422 (436)
                      |+||+++.++.....  +...+++|+|+++++++|+|.++. ...+++..|||+|+|++++.|  ||++|+.|.+.|.  
T Consensus       460 G~TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~G--Y~~~pe~T~~~f~--  533 (700)
T PTZ00216        460 GLTETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKG--YYKQEELTREVLD--  533 (700)
T ss_pred             CcccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccch--hcCChhHhhhhcc--
Confidence            999998766655443  456789999999999999996432 234566789999999999999  9999999999883  


Q ss_pred             ccCCeeecCCCCC
Q 013780          423 HTDSFIRGKDQQT  435 (436)
Q Consensus       423 ~~~~~~~tgD~~~  435 (436)
                       .+|||+|||+|+
T Consensus       534 -~dGw~~TGDig~  545 (700)
T PTZ00216        534 -EDGWFHTGDVGS  545 (700)
T ss_pred             -ccCCeeccceEE
Confidence             578999999984

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.7e-52  Score=420.17  Aligned_cols=385  Identities=25%  Similarity=0.306  Sum_probs=316.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCC----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~  102 (436)
                      .|+.+.|.+.++.+|+++|+++.+.+    +.+||.||.++++++|++|.+.|+++|++|+++++|++++++++|||+++
T Consensus        24 ~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~  103 (547)
T PRK13295         24 RTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRI  103 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence            67999999999999999999976322    78999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeecCCCCCHHHHHHHHHhcCCcEEEEccch-----HHHHhhc----C-CCcEEeccCCccccccccccCcccchhh
Q 013780          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPEL-----WDKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFH  172 (436)
Q Consensus       103 G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (436)
                      |++++|++|.++.+++.++++.++++++++++..     .+.+...    . .+.++....            .+..++.
T Consensus       104 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~  171 (547)
T PRK13295        104 GAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGG------------DGADSFE  171 (547)
T ss_pred             CcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecC------------CCccCHH
Confidence            9999999999999999999999999999998753     1112111    1 112221111            0112333


Q ss_pred             HHhhhcC-----C-CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHH
Q 013780          173 DLIELSG-----S-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (436)
Q Consensus       173 ~~~~~~~-----~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  246 (436)
                      ++.....     . ..........++++++++|||||||.||+|+++|+++..++........+..  ++++++..|++|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~l~~~p~~h  249 (547)
T PRK13295        172 ALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA--DDVILMASPMAH  249 (547)
T ss_pred             HHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCC--CCeEEEecCchh
Confidence            3332110     0 0011122346789999999999999999999999999888776555554433  399999999999


Q ss_pred             HHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHH
Q 013780          247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM  326 (436)
Q Consensus       247 ~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~  326 (436)
                      .+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+........+++||.+++||+++++++.
T Consensus       250 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~  329 (547)
T PRK13295        250 QTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALV  329 (547)
T ss_pred             hhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHH
Confidence            99988788999999999999998999999999999999999999999999998776666778999999999999999999


Q ss_pred             HHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCc
Q 013780          327 EDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGI  406 (436)
Q Consensus       327 ~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~  406 (436)
                      +++++.++ +++++ .||+||++.+.+............++|+|+++++++|+|+ ++.+++.|+.|||+++|+.++.| 
T Consensus       330 ~~~~~~~~-~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~g-  405 (547)
T PRK13295        330 ERARAALG-AKIVS-AWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDA-DGAPLPAGQIGRLQVRGCSNFGG-  405 (547)
T ss_pred             HHHHHHhC-CCeEE-eccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECC-CCCCCCCCCCCeEEEEcCccccc-
Confidence            99999995 99999 9999999876554432211234568999999999999995 78999999999999999999999 


Q ss_pred             cccCChhhhhhhccccccCCeeecCCCCC
Q 013780          407 VYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       407 ~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                       |+++|+.+...     .+|||+|||+|+
T Consensus       406 -Y~~~~~~t~~~-----~~g~~~TGD~~~  428 (547)
T PRK13295        406 -YLKRPQLNGTD-----ADGWFDTGDLAR  428 (547)
T ss_pred             -ccCCccccccC-----CCCCeecceEEE
Confidence             99999988765     367999999864

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.6e-53  Score=428.87  Aligned_cols=407  Identities=22%  Similarity=0.215  Sum_probs=305.2

Q ss_pred             CCCcCCCCCCCchHHHH-hhhccc--CCCceEEEeCCC----CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Q 013780           17 PPLVLPSDPSFSMVHFL-FRNSAS--YSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS   89 (436)
Q Consensus        17 ~~~~~~~~~~~ti~~~l-~~~~~~--~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~   89 (436)
                      ...|+++. ..|+...+ .++++.  +|+++|+++...    .+.+||+||.+++.++|+.|+++|+++||+|+++++|+
T Consensus        49 ~~~wf~~~-~~n~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~  127 (647)
T PTZ00237         49 YPDWFKGG-ELNTCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANT  127 (647)
T ss_pred             chhhCCCC-eeeHHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence            34677753 36665555 455543  799999987421    26899999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccc---------hHHHHhhc---C---CCcEEeccCC
Q 013780           90 IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE---------LWDKVKDL---N---LPAVLLGSKD  154 (436)
Q Consensus        90 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~---------~~~~~~~~---~---~~~~~~~~~~  154 (436)
                      +++++++|||+++|++++|+++.++.+++.+++++++++++|+++.         ..+.+.+.   .   ...++.....
T Consensus       128 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~  207 (647)
T PTZ00237        128 LEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRN  207 (647)
T ss_pred             HHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcC
Confidence            9999999999999999999999999999999999999999999752         11222111   1   1122221110


Q ss_pred             c--ccccc----ccccCcccchhhHHhhhcCC---CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHH-HhhhhhH
Q 013780          155 K--VSSSG----LISRSSKIVSFHDLIELSGS---VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF-IAASLMI  224 (436)
Q Consensus       155 ~--~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~  224 (436)
                      .  .....    .....+....+++++.....   ..........++++++|+|||||||.||+|+++|.++ .......
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~  287 (647)
T PTZ00237        208 DITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYW  287 (647)
T ss_pred             CcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHH
Confidence            0  00000    00001122345555542110   0111223456789999999999999999999999984 3322221


Q ss_pred             HhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCC--CC----HHHHHHHHHHhcceEEEecHHHHHHHH
Q 013780          225 SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK--FD----IEMALRAIEKYRVTVWWVVPPIILALA  298 (436)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~--~~----~~~~~~~l~~~~~t~l~~~p~~~~~l~  298 (436)
                      ......  ..++++++..|++|+.+.. .++.+|..|+++++.+.  +.    +..+++.++++++|+++++|++++.|.
T Consensus       288 ~~~~~~--~~~d~~~~~~~~~w~~~~~-~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~  364 (647)
T PTZ00237        288 RSIIEK--DIPTVVFSHSSIGWVSFHG-FLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLI  364 (647)
T ss_pred             HHhcCC--CCCcEEEEcCCCceEeeHH-HHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHH
Confidence            122222  2238999999999987654 68899999999998753  22    688999999999999999999999998


Q ss_pred             hccc-----cCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCC
Q 013780          299 KNSL-----VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAG  373 (436)
Q Consensus       299 ~~~~-----~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~  373 (436)
                      +...     ....++++||.+++||+++++++.+++++.++ +++++ .||+||+++.++..... .....+++|+|+|+
T Consensus       365 ~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g-~~i~~-~yG~TE~~~~~~~~~~~-~~~~~~s~G~p~~g  441 (647)
T PTZ00237        365 KTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLK-IKSSR-GYGQTEIGITYLYCYGH-INIPYNATGVPSIF  441 (647)
T ss_pred             hhCccccccccccCcchheEEEecCccCCHHHHHHHHHhcC-CCEEe-eechHHhChhhhccCCC-CCCCCCCCccCcCC
Confidence            7532     13457899999999999999999999999997 99999 99999998665543332 13345899999999


Q ss_pred             cEEEEEeCCCCccCCCCCceEEEEecC---CcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          374 VEAQIVSVDTLKPLPPNQLGEIWVRGP---NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       374 ~~v~i~d~~~~~~~~~g~~Gel~v~g~---~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ++++|+|+ +|++++.|+.|||++++|   +++.|  ||++++.+.+.|.  ..+|||+|||+|+
T Consensus       442 ~~~~i~d~-~g~~~~~ge~GEl~v~~p~~p~~~~g--y~~~~~~~~~~f~--~~~g~~~TGDlg~  501 (647)
T PTZ00237        442 IKPSILSE-DGKELNVNEIGEVAFKLPMPPSFATT--FYKNDEKFKQLFS--KFPGYYNSGDLGF  501 (647)
T ss_pred             ceEEEECC-CCCCCCCCCceEEEEeccCCchhhCc--eeCCHHHHHHHHh--CCCCEEECCcEEE
Confidence            99999995 899999999999999986   78999  9999999887652  1257999999873

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-52  Score=421.78  Aligned_cols=388  Identities=27%  Similarity=0.383  Sum_probs=317.6

Q ss_pred             CchH-HHHhhhcc-cCCCceEEEeCC--CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 013780           27 FSMV-HFLFRNSA-SYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (436)
Q Consensus        27 ~ti~-~~l~~~~~-~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~  102 (436)
                      +|+. +.+.++++ .+|+++|+++.+  ..+.+||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~  121 (570)
T PRK04319         42 VNIAYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKN  121 (570)
T ss_pred             eeHHHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence            5666 46677766 579999998753  2378999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC---CCcEEeccCCccccccccccCcccchhhHHhhhcC
Q 013780          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (436)
Q Consensus       103 G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (436)
                      |++++|+++.++.+++.++++.++++++++++..........   .+.+++..+..       ....+...+.+++....
T Consensus       122 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  194 (570)
T PRK04319        122 GAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDV-------EEGPGTLDFNALMEQAS  194 (570)
T ss_pred             CcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCc-------CCCcCccCHHHHHhhcC
Confidence            999999999999999999999999999999987654432211   12222221110       11123345666554433


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhcc
Q 013780          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (436)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~  259 (436)
                        .........++++++++|||||||.||+|+++|+++..+.........+..  .+++++..|++|.+|+...++.++.
T Consensus       195 --~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~g~~~~~~~~l~  270 (570)
T PRK04319        195 --DEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHE--DDVYWCTADPGWVTGTSYGIFAPWL  270 (570)
T ss_pred             --CcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCC--CceEEecCChHHhhCchHHHHHHHh
Confidence              222334456789999999999999999999999999887665544444433  3899999999999998778999999


Q ss_pred             CCcEEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCccCCCcceEEEecCCCCcHHHHHHHHhhCCCC
Q 013780          260 KGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (436)
Q Consensus       260 ~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~  336 (436)
                      .|+++++.. .+++..+++.++++++|+++++|+++..|.+...  ....++++||.+++||+++++++.+++++.++ .
T Consensus       271 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~  349 (570)
T PRK04319        271 NGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFG-L  349 (570)
T ss_pred             cCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHhC-C
Confidence            999998874 6899999999999999999999999999987643  23456889999999999999999999999997 8


Q ss_pred             eeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEec--CCcccCccccCChhh
Q 013780          337 TIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG--PNVTPGIVYINFFVF  414 (436)
Q Consensus       337 ~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g--~~~~~g~~Y~~~~~~  414 (436)
                      ++++ .||+||+++.+....... ...++++|+|+|+++++|+|+ ++.++++|+.|||+++|  +.++.|  ||++++.
T Consensus       350 ~i~~-~YG~tE~~~~~~~~~~~~-~~~~~~~G~p~~g~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~~~G--Y~~~~~~  424 (570)
T PRK04319        350 PIHD-NWWMTETGGIMIANYPAM-DIKPGSMGKPLPGIEAAIVDD-QGNELPPNRMGNLAIKKGWPSMMRG--IWNNPEK  424 (570)
T ss_pred             CeEe-ceeecccCCEEEecCCCC-CCCCCcCcCCCCCCEEEEECC-CCCCCCCCCceEEEEcCCCChHHhH--hcCCHHH
Confidence            9999 999999987655443321 456789999999999999995 78889999999999997  899999  9999999


Q ss_pred             hhhhccccccCCeeecCCCCC
Q 013780          415 TLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       415 ~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +.+.|    .+|||+|||+++
T Consensus       425 ~~~~~----~~gw~~TGDl~~  441 (570)
T PRK04319        425 YESYF----AGDWYVSGDSAY  441 (570)
T ss_pred             hhhhh----cCCceEeCcEEE
Confidence            99887    478999999864

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-52  Score=416.97  Aligned_cols=392  Identities=26%  Similarity=0.383  Sum_probs=330.8

Q ss_pred             CCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 013780           25 PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (436)
Q Consensus        25 ~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~  104 (436)
                      ...|+.++|.++++++|+++|+.+.  +..+||.||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus         9 ~~~~l~~~l~~~a~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~   86 (523)
T PRK08316          9 RRQTIGDILRRSARRYPDKTALVFG--DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGA   86 (523)
T ss_pred             cCCCHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence            3478999999999999999999987  69999999999999999999999999999999999999999999999999999


Q ss_pred             eEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC----CcEEeccCCccccccccccCcccchhhHHhhhcCC
Q 013780          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (436)
Q Consensus       105 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (436)
                      +++|+++.++.+++..+++.++++++++++.....+.....    ........     .........+..+.++..... 
T Consensus        87 ~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-  160 (523)
T PRK08316         87 VHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLV-----LGGREAPGGWLDFADWAEAGS-  160 (523)
T ss_pred             EEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeec-----ccccccccchhhHHHHHhcCC-
Confidence            99999999999999999999999999999887666543211    11111000     000011223445555544333 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  260 (436)
                       ..........+++++++|||||||.||+|.++|+++..+.........+...  +++++.+|++|.+++...++.++..
T Consensus       161 -~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~p~~h~~g~~~~~~~~~~~  237 (523)
T PRK08316        161 -VAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSAD--DIPLHALPLYHCAQLDVFLGPYLYV  237 (523)
T ss_pred             -CccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCC--ceEEEccCCchhhhHHHHHHHHHhc
Confidence             2223445677899999999999999999999999998887665555554333  9999999999999987667788999


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (436)
Q Consensus       261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~  340 (436)
                      |+++++.+..++..+++.++++++|++.++|+++..|.+.......+++++|.+++||++++.++.+.+++.+++.++++
T Consensus       238 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  317 (523)
T PRK08316        238 GATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYN  317 (523)
T ss_pred             CceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceee
Confidence            99999998889999999999999999999999999999887766678899999999999999999999999997799999


Q ss_pred             ccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780          341 VGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  420 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~  420 (436)
                       .||+||++.+.............+++|+|+++++++|+|+ ++.+++.|+.|||+++|+.++.|  |+++++.+.+.| 
T Consensus       318 -~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~~Gei~v~~~~~~~~--y~~~~~~~~~~~-  392 (523)
T PRK08316        318 -CYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDD-DGNDVAPGEVGEIVHRSPQLMLG--YWDDPEKTAEAF-  392 (523)
T ss_pred             -eecccccCccccccCccccccccCCcccCCCCcEEEEEcC-CCCCCCCCCcceEEEECCchhhh--hcCCHHHHHHHh-
Confidence             9999999887666544332456789999999999999994 78999999999999999999999  999999999888 


Q ss_pred             ccccCCeeecCCCCC
Q 013780          421 CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ~~~~~~~~~tgD~~~  435 (436)
                         .++||+|||+|.
T Consensus       393 ---~~~~~~TGDl~~  404 (523)
T PRK08316        393 ---RGGWFHSGDLGV  404 (523)
T ss_pred             ---hCCCeeccceEE
Confidence               588999999863

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-52  Score=427.09  Aligned_cols=386  Identities=23%  Similarity=0.303  Sum_probs=300.0

Q ss_pred             CCCchHHHHhhhcccCCCceEEEeCCC--C--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013780           25 PSFSMVHFLFRNSASYSSKLALIDADS--D--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI  100 (436)
Q Consensus        25 ~~~ti~~~l~~~~~~~p~~~a~~~~~~--~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~  100 (436)
                      ...|+.+.|.++++++|+++|+++.+.  +  +.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+
T Consensus        47 ~~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~  126 (624)
T PRK12582         47 YPRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAM  126 (624)
T ss_pred             cccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHH
Confidence            347899999999999999999987532  2  689999999999999999999999999999999999999999999999


Q ss_pred             HhCCeEeecCCCCCH-----HHHHHHHHhcCCcEEEEccch-HH-HHhhc---CCCcEEeccCCccccccccccCcccch
Q 013780          101 AIGAIASTANPVYTV-----SELSKQVKDSNPKLVITVPEL-WD-KVKDL---NLPAVLLGSKDKVSSSGLISRSSKIVS  170 (436)
Q Consensus       101 ~~G~~~v~l~~~~~~-----~~~~~~l~~~~~~~vi~~~~~-~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (436)
                      ++|++++|++|.++.     +++.++++.++++++|+++.. .. .+...   ..+.+.+...         ........
T Consensus       127 ~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~---------~~~~~~~~  197 (624)
T PRK12582        127 QAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGP---------GEGIASIA  197 (624)
T ss_pred             HcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCC---------Cccccccc
Confidence            999999999999874     899999999999999998642 11 11111   1122211111         01112234


Q ss_pred             hhHHhhhcCCCC-CCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCC-CCcEEEechhHHHHH
Q 013780          171 FHDLIELSGSVT-DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-LDHVVLCVLPMFHVF  248 (436)
Q Consensus       171 ~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~  248 (436)
                      +.++........ ........++++++|+|||||||.||+|++||+++..+............. ..+++++++|++|.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~  277 (624)
T PRK12582        198 FADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTM  277 (624)
T ss_pred             HHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHH
Confidence            555443322100 011123457899999999999999999999999998876554333222221 137999999999999


Q ss_pred             HHHHHHHhhccCCcEEEEcC-CCCH---HHHHHHHHHhcceEEEecHHHHHHHHhcccc----CccCCCcceEEEecCCC
Q 013780          249 GLSVILYDQLQKGNCVVSMG-KFDI---EMALRAIEKYRVTVWWVVPPIILALAKNSLV----RKFDISSLKLVGSGAAP  320 (436)
Q Consensus       249 g~~~~~~~~l~~G~~v~~~~-~~~~---~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~----~~~~l~~lr~i~~gg~~  320 (436)
                      |+...++.++..|+++++.+ .+.+   ..+++.++++++|+++++|.++..|.+....    ....+++||.+++||++
T Consensus       278 g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~  357 (624)
T PRK12582        278 GGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGAT  357 (624)
T ss_pred             hHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCC
Confidence            98767788999999999875 3333   4567778999999999999999988764322    22347899999999999


Q ss_pred             CcHHHHHHHHhhC----C-CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEE
Q 013780          321 LGKELMEDCQKNI----P-GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI  395 (436)
Q Consensus       321 l~~~~~~~~~~~~----~-~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel  395 (436)
                      +++++.+++++.+    + ++++++ .||+||+++++......  ..+.+++|+|+||++++|++        .|+.|||
T Consensus       358 l~~~~~~~~~~~~~~~~g~~~~l~~-~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~~--------~G~~GEl  426 (624)
T PRK12582        358 LSDDLYERMQALAVRTTGHRIPFYT-GYGATETAPTTTGTHWD--TERVGLIGLPLPGVELKLAP--------VGDKYEV  426 (624)
T ss_pred             CCHHHHHHHHHHHHhhcCCCceEEe-ccccccccceeecccCC--CCCCCCCCcCCCCcEEEEcc--------CCCceEE
Confidence            9999999999863    3 368899 99999998766533332  45678999999999999974        3778999


Q ss_pred             EEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          396 WVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       396 ~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +++|++++.|  ||++|+.+.+.|   ..+|||+|||+|+
T Consensus       427 ~vrg~~v~~G--Y~~~p~~t~~~f---~~dgw~~TGDlg~  461 (624)
T PRK12582        427 RVKGPNVTPG--YHKDPELTAAAF---DEEGFYRLGDAAR  461 (624)
T ss_pred             EEECCccccc--ccCCccchhhhc---CccCCccccceEE
Confidence            9999999999  999999998877   2578999999874

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-52  Score=414.55  Aligned_cols=391  Identities=27%  Similarity=0.410  Sum_probs=327.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.+.|.+.++.+|+++|+++.  +..+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         5 ~~i~~~l~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~   82 (513)
T PRK07656          5 MTLPELLARAARRFGDKEAYVFG--DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVV   82 (513)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEeC--CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            77999999999999999999997  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchhhHHhhhcCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (436)
                      +++++..+.+++..++++++++++++++..........     .+.+++.......     .......++.++.....  
T Consensus        83 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--  155 (513)
T PRK07656         83 VPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDD-----PHTEKMKTFTDFLAAGD--  155 (513)
T ss_pred             EecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccc-----cCccccccHHHHHhcCC--
Confidence            99999999999999999999999999987655443321     2222222221100     00112235555554433  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCC
Q 013780          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (436)
Q Consensus       182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  261 (436)
                      ..........+++++++|||||||.||+|.++|.++...+........+..  .+++++.+|++|.+++...++.++..|
T Consensus       156 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~G  233 (513)
T PRK07656        156 PAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTE--GDRYLAANPFFHVFGYKAGVNAPLMRG  233 (513)
T ss_pred             CCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCC--CCeEEEccchHHHHHHHHHHHHHHHcC
Confidence            222334457789999999999999999999999999887766555544433  399999999999999987899999999


Q ss_pred             cEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeec
Q 013780          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV  341 (436)
Q Consensus       262 ~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~  341 (436)
                      +++++.+.+++..+++.++++++|++.++|+++..|.+........++++|.+++||+++++++.+++++.++...+++ 
T Consensus       234 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-  312 (513)
T PRK07656        234 ATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLT-  312 (513)
T ss_pred             ceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEe-
Confidence            9999998889999999999999999999999999999987776678899999999999999999999999998338999 


Q ss_pred             cccccccCCcccccCCCCC-ccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780          342 GYGMTETCAPISLENPLVG-VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  420 (436)
Q Consensus       342 ~YG~tE~~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~  420 (436)
                      .||+||+++++........ ...++++|.|+++++++|+|+ ++.+++.|+.|||+++|+.++.|  |+++++.+...+ 
T Consensus       313 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~-  388 (513)
T PRK07656        313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNE-LGEEVPVGEVGELLVRGPNVMKG--YYDDPEATAAAI-  388 (513)
T ss_pred             EEccccCCCceeecCccccccccCCCccccCCCcEEEEECC-CCCCCCCCCceEEEEEcchhhhh--hcCCHHHHhhhh-
Confidence            9999999887766544321 123689999999999999995 89999999999999999999999  999999888776 


Q ss_pred             ccccCCeeecCCCCC
Q 013780          421 CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ~~~~~~~~~tgD~~~  435 (436)
                        ..++||+|||+|+
T Consensus       389 --~~~~~~~tGDl~~  401 (513)
T PRK07656        389 --DADGWLHTGDLGR  401 (513)
T ss_pred             --ccCCceeccceEE
Confidence              3478999999873

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=6e-52  Score=422.39  Aligned_cols=404  Identities=23%  Similarity=0.281  Sum_probs=312.8

Q ss_pred             CcCCCCCCCchHH-HHhhhcccCCCceEEEeCCC----CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHH
Q 013780           19 LVLPSDPSFSMVH-FLFRNSASYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP   93 (436)
Q Consensus        19 ~~~~~~~~~ti~~-~l~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~   93 (436)
                      .|+++. ..|+.. .|.++++.+|+++|+++...    .+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++
T Consensus        49 ~wf~~~-~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~  127 (625)
T TIGR02188        49 KWFVGG-ELNVSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAA  127 (625)
T ss_pred             eeCCCC-EEEHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence            455542 255555 45567788999999987532    268999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHH---------HH----hhcC--CCcEEeccCCcccc
Q 013780           94 ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KV----KDLN--LPAVLLGSKDKVSS  158 (436)
Q Consensus        94 ~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~----~~~~--~~~~~~~~~~~~~~  158 (436)
                      +++|||+++|++++++++.++.+++.+++++++++++|+++....         .+    ....  .+.+++..... ..
T Consensus       128 ~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  206 (625)
T TIGR02188       128 IAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTG-NP  206 (625)
T ss_pred             HHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCC-CC
Confidence            999999999999999999999999999999999999999875321         11    1111  12122211100 00


Q ss_pred             ccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhH-HhhhhccCCCCcE
Q 013780          159 SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI-SAHQELVGELDHV  237 (436)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~~  237 (436)
                      ..  ........++++.....  .........++++++|+|||||||.||+|+++|+++..+.... .....+  ...|+
T Consensus       207 ~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~--~~~d~  280 (625)
T TIGR02188       207 VP--WVEGRDVWWHDLMAKAS--AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDI--KDGDI  280 (625)
T ss_pred             cC--ccccccccHHHHHhhcC--CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCC--CCCcE
Confidence            00  00011223555544332  2223344567899999999999999999999999987554322 122222  23399


Q ss_pred             EEechhHHHHHHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcc
Q 013780          238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSL  311 (436)
Q Consensus       238 ~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l  311 (436)
                      +++..|++|+.+....++.+|..|+++++.+.    +++..+++.++++++|+++++|++++.|.+....  ...++++|
T Consensus       281 ~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~l  360 (625)
T TIGR02188       281 FWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSL  360 (625)
T ss_pred             EEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccce
Confidence            99999999999887678999999999998742    4799999999999999999999999999886532  33568899


Q ss_pred             eEEEecCCCCcHHHHHHHHhhCC--CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCC-
Q 013780          312 KLVGSGAAPLGKELMEDCQKNIP--GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP-  388 (436)
Q Consensus       312 r~i~~gg~~l~~~~~~~~~~~~~--~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~-  388 (436)
                      |.+++||+++++++.+++.+.++  ++++++ .||+||+++.++...+.....+++++|+|+++++++|+| ++|++++ 
T Consensus       361 r~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~-~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~  438 (625)
T TIGR02188       361 RLLGSVGEPINPEAWMWYYKVVGKERCPIVD-TWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEG  438 (625)
T ss_pred             eEEEEecCCCCHHHHHHHHHHcCCCCCceEe-cccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCC
Confidence            99999999999999999999986  378999 999999988765543332245788999999999999999 6899999 


Q ss_pred             CCCceEEEEec--CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          389 PNQLGEIWVRG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       389 ~g~~Gel~v~g--~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +|+.|||+++|  |+++.|  ||++++.+.+.+. -..+|||+|||+|+
T Consensus       439 ~g~~GeL~v~~p~p~~~~g--y~~~~~~~~~~~~-~~~~g~~~TGDl~~  484 (625)
T TIGR02188       439 PGEGGYLVIKQPWPGMLRT--IYGDHERFVDTYF-SPFPGYYFTGDGAR  484 (625)
T ss_pred             CCCeEEEEEccCCCccccc--ccCChHHHHHHHh-ccCCCEEECCceEE
Confidence            89999999999  689999  9999988776541 11357999999874

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=4e-52  Score=423.26  Aligned_cols=406  Identities=22%  Similarity=0.273  Sum_probs=311.3

Q ss_pred             CCcCCCCCCCchH-HHHhhhcccCCCceEEEeCC----CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH
Q 013780           18 PLVLPSDPSFSMV-HFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF   92 (436)
Q Consensus        18 ~~~~~~~~~~ti~-~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~   92 (436)
                      ..|+++. ..|+. +.|.++++++|+++|+++..    ..+.+||+||.+++.++|+.|.++|+++||+|+++++|++++
T Consensus        43 ~~wf~~~-~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~  121 (628)
T TIGR02316        43 ARWFAGG-RTNLCHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEA  121 (628)
T ss_pred             CccCCCC-EeeHHHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH
Confidence            3555553 36665 56677888899999998731    237899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchH---------HHHh----hc--CCCcEEeccCCccc
Q 013780           93 PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVK----DL--NLPAVLLGSKDKVS  157 (436)
Q Consensus        93 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~----~~--~~~~~~~~~~~~~~  157 (436)
                      ++++|||+++|++++|+++.++.+++.+++++++++++|+++...         ..+.    ..  ....+++.......
T Consensus       122 v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~  201 (628)
T TIGR02316       122 VFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAP  201 (628)
T ss_pred             HHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence            999999999999999999999999999999999999999986431         1111    11  11222222111000


Q ss_pred             cccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhh-hhHHhhhhccCCCCc
Q 013780          158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS-LMISAHQELVGELDH  236 (436)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~-~~~~~~~~~~~~~~~  236 (436)
                         ..........+.++...... .........++++++|+|||||||.||||+++|.++..+. ........+  ..+|
T Consensus       202 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d  275 (628)
T TIGR02316       202 ---MRLIPGRDVDYAALRTQHED-AQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGI--RAGQ  275 (628)
T ss_pred             ---cCcccCccccHHHHhhcccc-CCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCC--CCCc
Confidence               00001112345554433211 1112223467899999999999999999999999986432 222223333  2339


Q ss_pred             EEEechhHHHHHHHHHHHHhhccCCcEEEEcC----CCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCc
Q 013780          237 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG----KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISS  310 (436)
Q Consensus       237 ~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~----~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~  310 (436)
                      ++++..|+.|+.++...++.+|..|+++++.+    .+++..+++.++++++|+++++|++++.|.+....  ...++++
T Consensus       276 ~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~  355 (628)
T TIGR02316       276 VMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSS  355 (628)
T ss_pred             EEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccc
Confidence            99999999999998767899999999999975    34789999999999999999999999998876432  3457899


Q ss_pred             ceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCC--CccCcCccccccCCcEEEEEeCCCCccCC
Q 013780          311 LKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLP  388 (436)
Q Consensus       311 lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~--~~~~~~~~G~p~~~~~v~i~d~~~~~~~~  388 (436)
                      ||.+++||+++++++.+++++.++ ..+++ .||+||++..++......  ...+.+++|+|+|+++++|+|+++|++++
T Consensus       356 lr~~~~gGe~l~~~~~~~~~~~~~-~~~~~-~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~  433 (628)
T TIGR02316       356 LHWLFLAGEPLDEPTAHWITDGLG-KPVID-NYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCG  433 (628)
T ss_pred             eeEEEEecCCCCHHHHHHHHHHhC-CCEEe-cccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCC
Confidence            999999999999999999999987 88999 999999985444332211  13456899999999999999976899999


Q ss_pred             CCCceEEEEecC---CcccCccccCChhhhhhhc-cccccCCeeecCCCCC
Q 013780          389 PNQLGEIWVRGP---NVTPGIVYINFFVFTLFLW-GCEHTDSFIRGKDQQT  435 (436)
Q Consensus       389 ~g~~Gel~v~g~---~~~~g~~Y~~~~~~~~~~~-~~~~~~~~~~tgD~~~  435 (436)
                      .|+.|||+++||   .++.|  ||++++.+.+.+ ..+ .++||+|||+|+
T Consensus       434 ~g~~Gel~v~gp~~~g~~~~--~~~~~~~~~~~~~~~~-~~~~~~TGD~g~  481 (628)
T TIGR02316       434 PNEKGVLTVVPPLPPGCLST--VWGDDARFLKTYWSHF-KRPLYSSFDWGI  481 (628)
T ss_pred             CCCcEEEEEecCCCcccccc--ccCChHHHHHhhhhcC-CCCEEECCceEE
Confidence            999999999998   46789  999998877654 212 367999999874

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4.3e-52  Score=418.06  Aligned_cols=385  Identities=23%  Similarity=0.319  Sum_probs=303.1

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCC--------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHH
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSD--------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG   98 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~--------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA   98 (436)
                      +|+.+.|.+.++++|+++|+++.+.+        ..+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la   85 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFA   85 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHH
Confidence            78999999999999999999886432        2899999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEcc--chHHHHhhcC---CCcEEeccCCccccccccccCcccchhhH
Q 013780           99 VIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP--ELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHD  173 (436)
Q Consensus        99 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (436)
                      |+++|++++|++|.++.+++.+++++++++++|+++  ...+.+....   ....+....         ........+.+
T Consensus        86 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~~~~~~~~~~~  156 (552)
T PRK09274         86 LFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGG---------RLLWGGTTLAT  156 (552)
T ss_pred             HHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheecccc---------ccccCCccHHH
Confidence            999999999999999999999999999999999975  2222222111   111111111         00111123444


Q ss_pred             HhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHH
Q 013780          174 LIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI  253 (436)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~  253 (436)
                      +...... .........++++++++|||||||.||+|+++|+++..++........+..  .++.++.+|++|.+++   
T Consensus       157 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~pl~~~~~~---  230 (552)
T PRK09274        157 LLRDGAA-APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEP--GEIDLPTFPLFALFGP---  230 (552)
T ss_pred             hcccCcc-ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCC--CceeeeccCHHHhhhh---
Confidence            3322111 122233456789999999999999999999999999988776655554433  3899999999886554   


Q ss_pred             HHhhccCCcEEEEcC-------CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHH
Q 013780          254 LYDQLQKGNCVVSMG-------KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM  326 (436)
Q Consensus       254 ~~~~l~~G~~v~~~~-------~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~  326 (436)
                           ..|+++++.+       .+++..+++.|+++++|+++++|+++..|.+.......++++||.+++||+++++++.
T Consensus       231 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~  305 (552)
T PRK09274        231 -----ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVI  305 (552)
T ss_pred             -----hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHH
Confidence                 3477777653       4689999999999999999999999999998766566688999999999999999999


Q ss_pred             HHHHhhCC-CCeeeeccccccccCCcccccCCC------C--CccCcCccccccCCcEEEEEeCC--------CCccCCC
Q 013780          327 EDCQKNIP-GATIFQVGYGMTETCAPISLENPL------V--GVRRSGSAGTLVAGVEAQIVSVD--------TLKPLPP  389 (436)
Q Consensus       327 ~~~~~~~~-~~~i~~~~YG~tE~~~~~~~~~~~------~--~~~~~~~~G~p~~~~~v~i~d~~--------~~~~~~~  389 (436)
                      +++++.|+ ++++++ .||+||++++++.....      .  ......++|+|+|+++++|+|++        ++++++.
T Consensus       306 ~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~  384 (552)
T PRK09274        306 ERFRAMLPPDAEILT-PYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLAT  384 (552)
T ss_pred             HHHHHHcCCCceEEc-cccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCC
Confidence            99999997 379999 99999998765543211      0  01223479999999999999952        4678999


Q ss_pred             CCceEEEEecCCcccCccccCChhhhhhhccccccCC--eeecCCCCC
Q 013780          390 NQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS--FIRGKDQQT  435 (436)
Q Consensus       390 g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~--~~~tgD~~~  435 (436)
                      |+.|||+++|++++.|  ||++|+.+...|- .+.++  ||+|||+|+
T Consensus       385 g~~Gel~v~g~~~~~G--Y~~~~~~t~~~~~-~~~~g~~w~~TGDlg~  429 (552)
T PRK09274        385 GEIGEIVVAGPMVTRS--YYNRPEATRLAKI-PDGQGDVWHRMGDLGY  429 (552)
T ss_pred             CCeeEEEEecCccccc--ccCChHHhhhhhc-ccCCCCcEEEcCCEEE
Confidence            9999999999999999  9999999887651 12344  999999874

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.3e-52  Score=417.68  Aligned_cols=399  Identities=28%  Similarity=0.370  Sum_probs=323.4

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      ++|+.+.|.++++++|+++|+++.  ++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  108 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF--GATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAV  108 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcE
Confidence            368999999999999999999986  689999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccCCcccc------------------ccccc
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSS------------------SGLIS  163 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~------------------~~~~~  163 (436)
                      ++|++|.++.+++.+++++++++++|+++.....+....    .+.++.........                  .....
T Consensus       109 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (573)
T PRK05605        109 VVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALTG  188 (573)
T ss_pred             EeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999887655443321    11221111000000                  00000


Q ss_pred             cCcccchhhHHhhhcCCCC--CCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEec
Q 013780          164 RSSKIVSFHDLIELSGSVT--DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCV  241 (436)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~  241 (436)
                      ...+...|.++........  .........+++++++|||||||.||+|.++|+++..++.............++++++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~  268 (573)
T PRK05605        189 PAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAA  268 (573)
T ss_pred             CCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEe
Confidence            1123334555544322100  01223356789999999999999999999999999877654322221112224899999


Q ss_pred             hhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCC
Q 013780          242 LPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL  321 (436)
Q Consensus       242 ~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l  321 (436)
                      +|++|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|++++.|.+........+++||.+++||+++
T Consensus       269 ~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l  348 (573)
T PRK05605        269 LPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMAL  348 (573)
T ss_pred             cChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcC
Confidence            99999999877788889999999999888999999999999999999999999999988776777889999999999999


Q ss_pred             cHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCC-CccCCCCCceEEEEecC
Q 013780          322 GKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT-LKPLPPNQLGEIWVRGP  400 (436)
Q Consensus       322 ~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~-~~~~~~g~~Gel~v~g~  400 (436)
                      ++++.+.+.+.++ ..+++ .||+||+++++....... ..+++++|+|+++++++|+|+++ +.+++.|+.|||+++|+
T Consensus       349 ~~~~~~~~~~~~~-~~i~~-~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~  425 (573)
T PRK05605        349 PVSTVELWEKLTG-GLLVE-GYGLTETSPIIVGNPMSD-DRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGP  425 (573)
T ss_pred             CHHHHHHHHHHhC-CCeec-ccccchhchhhhcCCccc-CCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecC
Confidence            9999999999886 89999 999999987766554332 44578999999999999999766 68999999999999999


Q ss_pred             CcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          401 NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       401 ~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .++.|  |+++++.+.+.|    .+|||+|||+|.
T Consensus       426 ~~~~g--y~~~~~~~~~~~----~~g~~~TGD~~~  454 (573)
T PRK05605        426 QVFKG--YWNRPEETAKSF----LDGWFRTGDVVV  454 (573)
T ss_pred             chhhh--hcCChhHhhhcc----cCCCcccCCEEE
Confidence            99999  999999998877    356999999763

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.5e-52  Score=410.10  Aligned_cols=370  Identities=20%  Similarity=0.246  Sum_probs=307.0

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      |++.+.|.++++++|+++|+++.  +..+||.||.++++++|+.|.+.|. +|++|+|+++|++++++++|||+++|+++
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~~~   77 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN--DRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGWTC   77 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC--CcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence            57899999999999999999987  7899999999999999999999884 89999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|+++.++.+++.++++.+++++++++......+.......  +..+                .+........  .....
T Consensus        78 v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~----------------~~~~~~~~~~--~~~~~  137 (487)
T PRK07638         78 VPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRV--IEID----------------EWKRMIEKYL--PTYAP  137 (487)
T ss_pred             EecCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceE--EEeh----------------hhhhhhhhcc--ccccc
Confidence            99999999999999999999999999986554443221111  1111                1111111111  11112


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      .....+++++|+|||||||.||+|+++|+++..++........+..  .|+++...|++|..++. .++.++..|+++++
T Consensus       138 ~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~d~~~~~~~l~~~~~l~-~~~~~l~~g~~~~~  214 (487)
T PRK07638        138 IENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKR--EDSVLIAGTLVHSLFLY-GAISTLYVGQTVHL  214 (487)
T ss_pred             cccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCC--CCEEEEeecchHHHHHH-HHHHHHccCcEEEE
Confidence            2234567899999999999999999999999888776555444433  39999999999988764 78889999999999


Q ss_pred             cCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccccc
Q 013780          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMT  346 (436)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~t  346 (436)
                      .+.+++..+++.++++++|++.++|+++..|.+...    ...+.+.++++|+++++++.+++++.+++.++++ .||+|
T Consensus       215 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~-~YG~t  289 (487)
T PRK07638        215 MRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYE-FYGAS  289 (487)
T ss_pred             cCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEE-EecCC
Confidence            999999999999999999999999999999988732    2345566778889999999999999998899999 99999


Q ss_pred             ccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCC
Q 013780          347 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS  426 (436)
Q Consensus       347 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~  426 (436)
                      |++.++...... ...+..++|+|+++++++|+| ++|.++++|+.|||+++|+.++.|  ||++++.+.+.+    .++
T Consensus       290 E~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~----~~g  361 (487)
T PRK07638        290 ELSFVTALVDEE-SERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMG--YIIGGVLARELN----ADG  361 (487)
T ss_pred             ccCceEEecccc-cCCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceee--ecCCHHHHhhhc----cCC
Confidence            998766554322 245678999999999999999 489999999999999999999999  999998877755    578


Q ss_pred             eeecCCCCC
Q 013780          427 FIRGKDQQT  435 (436)
Q Consensus       427 ~~~tgD~~~  435 (436)
                      ||+|||++.
T Consensus       362 ~~~TGDl~~  370 (487)
T PRK07638        362 WMTVRDVGY  370 (487)
T ss_pred             cEecCccEe
Confidence            999999873

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-51  Score=415.36  Aligned_cols=396  Identities=22%  Similarity=0.383  Sum_probs=315.8

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      .|+.+.|.+.++++|+++|+++.  ++.+||+||.+++.++|+.|.+ .|+++||+|+++++|++++++++|||+++|++
T Consensus        24 ~~~~~~l~~~a~~~p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~  101 (562)
T PRK05677         24 PNIQAVLKQSCQRFADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLI  101 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            58999999999999999999976  6899999999999999999987 69999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhc----CCCcEEeccCCc-ccccc---------------ccccC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDK-VSSSG---------------LISRS  165 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~---------------~~~~~  165 (436)
                      ++|++|.++.+++.++++.++++++|++....+.+...    ..+.+++..... .....               .....
T Consensus       102 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
T PRK05677        102 VVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAYHL  181 (562)
T ss_pred             EeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccccccCC
Confidence            99999999999999999999999999987655433322    122222211000 00000               00001


Q ss_pred             cccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCC-CCcEEEechhH
Q 013780          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-LDHVVLCVLPM  244 (436)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~p~  244 (436)
                      +....+.+.+..... .........++++++++|||||||.||+|+++|+++..++............ ..+.+++.+|+
T Consensus       182 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl  260 (562)
T PRK05677        182 PQAVKFNDALAKGAG-QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPL  260 (562)
T ss_pred             cccccHHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcH
Confidence            122233433332221 1122334567899999999999999999999999998776544333322111 22789999999


Q ss_pred             HHHHHHHHHHHhhccCCcEEEEc-CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcH
Q 013780          245 FHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (436)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~  323 (436)
                      +|.+++...++..+..|++.++. .++++..+++.++++++|+++++|+++..+..........++++|.+++||+++++
T Consensus       261 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~  340 (562)
T PRK05677        261 YHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQL  340 (562)
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCH
Confidence            99999876777788888876665 46789999999999999999999999999988765555567899999999999999


Q ss_pred             HHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcc
Q 013780          324 ELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT  403 (436)
Q Consensus       324 ~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~  403 (436)
                      ++.++|++.++ +++++ .||+||+++++......  ..+++++|+|+++++++|+|+ ++..++.|+.|||+++|+.++
T Consensus       341 ~~~~~~~~~~~-~~v~~-~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~  415 (562)
T PRK05677        341 ATAERWKEVTG-CAICE-GYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVIDD-DGNELPLGEVGELCVKGPQVM  415 (562)
T ss_pred             HHHHHHHHHcC-CCeec-cCCccccCcceeecCcc--CCCCCccCccCCCCEEEEECC-CCCCCCCCCCeEEEEecCccc
Confidence            99999999986 99999 99999998766654433  456789999999999999995 789999999999999999999


Q ss_pred             cCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          404 PGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       404 ~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .|  |+++|+.+.+.|   ..++||+|||+|+
T Consensus       416 ~g--Y~~~~~~t~~~~---~~~g~~~TGDlg~  442 (562)
T PRK05677        416 KG--YWQRPEATDEIL---DSDGWLKTGDIAL  442 (562)
T ss_pred             hh--hcCCchhhhhcc---CCCCcccccceEE
Confidence            99  999999998876   3578999999863

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.6e-53  Score=373.61  Aligned_cols=383  Identities=23%  Similarity=0.317  Sum_probs=325.8

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.+.|.++++++|+++|+++.  ++.|||+||.++++++|..|++.||++||+|.+.+||..+|++++||++++|+.+
T Consensus        28 ~~l~d~L~~~A~~~pdriAv~d~--~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~P  105 (542)
T COG1021          28 RTLTDILTDHAARYPDRIAVIDG--ERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAP  105 (542)
T ss_pred             CcHHHHHHHHHhhcCCceEEecC--cccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcch
Confidence            68999999999999999999998  7889999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccch--------HHHHhhc-C-CCcEEeccCCccccccccccCcccchhhHHhh
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPEL--------WDKVKDL-N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~--------~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      |..=|.....|+.+....++++.+|.+..+        .+.+... . .+.+++..+.          .. .......+.
T Consensus       106 VlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~----------~~-~~~~~~~~~  174 (542)
T COG1021         106 VLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEA----------EH-PSVLEAALC  174 (542)
T ss_pred             hhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCC----------CC-cchhhhhhh
Confidence            999999999999999999999999988532        2222222 2 3444444221          11 111222222


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHH-HH
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LY  255 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~-~~  255 (436)
                      .... ...+....+++++++.+.+.||||.||.++.||..+..+..+..+.+.+...  .++++.+|..|-+.+.+- .+
T Consensus       175 ~~a~-~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~--tvyL~~LP~AHNfplssPG~L  251 (542)
T COG1021         175 HPAG-LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQ--TVYLCALPAAHNFPLSSPGAL  251 (542)
T ss_pred             Cccc-cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCcc--ceEEEecccccCCCCCCcchh
Confidence            2111 2223455678889999999999999999999999999999988888888555  999999999998877643 88


Q ss_pred             hhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCC
Q 013780          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (436)
Q Consensus       256 ~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~  335 (436)
                      ..+++|+++++.+..+|...+.+|+++++|+...+|.+...++........+++|||.+-+||+.+++++.+++...++ 
T Consensus       252 Gv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lg-  330 (542)
T COG1021         252 GVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLG-  330 (542)
T ss_pred             heeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhC-
Confidence            9999999999999999999999999999999999999999999999989999999999999999999999999999998 


Q ss_pred             CeeeeccccccccCCcccccCCCC-CccCcCcccccc-CCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChh
Q 013780          336 ATIFQVGYGMTETCAPISLENPLV-GVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFV  413 (436)
Q Consensus       336 ~~i~~~~YG~tE~~~~~~~~~~~~-~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~  413 (436)
                      +.+-+ ++||.|.-  +.++..++ .+....+.|+|+ |.-|++|+| ++|+++++||+|+|..+||....|  ||+.|+
T Consensus       331 C~LQQ-VFGMAEGL--vnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirG--Yyrap~  404 (542)
T COG1021         331 CQLQQ-VFGMAEGL--VNYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRG--YYRAPE  404 (542)
T ss_pred             chHHH-Hhhhhhhh--hcccccCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeee--eccCch
Confidence            99999 99999943  33333322 244567899999 788999999 699999999999999999999999  999999


Q ss_pred             hhhhhccccccCCeeecCCCCC
Q 013780          414 FTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       414 ~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      -+.+.|.   .+|+|+|||+.+
T Consensus       405 HNa~aF~---a~GFYrsGD~V~  423 (542)
T COG1021         405 HNARAFD---ADGFYRSGDLVR  423 (542)
T ss_pred             hhhhccC---cCCceecCceeE
Confidence            9999984   789999999753

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-51  Score=419.34  Aligned_cols=404  Identities=22%  Similarity=0.302  Sum_probs=312.5

Q ss_pred             CcCCCCCCCchHH-HHhhhcccCCCceEEEeCCC----CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHH
Q 013780           19 LVLPSDPSFSMVH-FLFRNSASYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP   93 (436)
Q Consensus        19 ~~~~~~~~~ti~~-~l~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~   93 (436)
                      .++++ +..|+.. .|.++++++|+++|+++...    ...+||+||.+++.++|+.|++.|+++||+|+++++|+++++
T Consensus        59 ~w~~~-~~~n~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~  137 (637)
T PRK00174         59 KWFED-GELNVSYNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAA  137 (637)
T ss_pred             ccCCC-CEeEHHHHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence            44443 2355544 56677888999999986532    358999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHH---------HHh----hcC-CCcEEeccCCccccc
Q 013780           94 ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVK----DLN-LPAVLLGSKDKVSSS  159 (436)
Q Consensus        94 ~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~----~~~-~~~~~~~~~~~~~~~  159 (436)
                      +++|||+++|+++++++|.++.+++.+++++++++++|+++....         .+.    ... .+.+++..... ...
T Consensus       138 ~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  216 (637)
T PRK00174        138 VAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTG-GDV  216 (637)
T ss_pred             HHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCC-CCc
Confidence            999999999999999999999999999999999999999865321         111    111 12222221100 000


Q ss_pred             cccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHH-hhhhccCCCCcEE
Q 013780          160 GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVV  238 (436)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~~~  238 (436)
                      .  ........++++.....  .........++++++|+|||||||.||+|+++|++++.++.... ....+  ...|++
T Consensus       217 ~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~--~~~d~~  290 (637)
T PRK00174        217 D--WVEGRDLWWHELVAGAS--DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDY--KDGDVY  290 (637)
T ss_pred             C--cCCCCcccHHHHHhhcC--CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCC--CCCcEE
Confidence            0  00111233555554322  22233445678999999999999999999999999876543221 22223  223999


Q ss_pred             EechhHHHHHHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcce
Q 013780          239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLK  312 (436)
Q Consensus       239 ~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr  312 (436)
                      ++..|++|+.+....++.+|..|+++++.+.    +++..+++.++++++|++.++|++++.|.+....  ...++++||
T Consensus       291 ~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr  370 (637)
T PRK00174        291 WCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLR  370 (637)
T ss_pred             EEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCcccee
Confidence            9999999999987678999999999998742    4799999999999999999999999999886542  335678999


Q ss_pred             EEEecCCCCcHHHHHHHHhhCCC--CeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCC
Q 013780          313 LVGSGAAPLGKELMEDCQKNIPG--ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN  390 (436)
Q Consensus       313 ~i~~gg~~l~~~~~~~~~~~~~~--~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g  390 (436)
                      .+++||+++++++.+++.+.++.  +++++ .||+||+++.++...+.....+++++|+|++|++++|+| ++|++++.|
T Consensus       371 ~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g  448 (637)
T PRK00174        371 LLGSVGEPINPEAWEWYYKVVGGERCPIVD-TWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGG  448 (637)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhCCCCCceEe-cccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCC
Confidence            99999999999999999998863  78999 999999988665443322244678999999999999999 589999999


Q ss_pred             CceEEEEec--CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          391 QLGEIWVRG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       391 ~~Gel~v~g--~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +.|||+++|  |+++.|  ||++++.+.+.+ +-..+|||+|||+|+
T Consensus       449 ~~Gel~v~g~~p~~~~g--y~~~~~~~~~~~-~~~~~g~~~TGDl~~  492 (637)
T PRK00174        449 EGGNLVIKDPWPGMMRT--IYGDHERFVKTY-FSTFKGMYFTGDGAR  492 (637)
T ss_pred             CcEEEEEcCCCCccccc--ccCCHHHHHHhh-hcCCCCEEECCceEE
Confidence            999999999  689999  999999877654 112367999999864

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.9e-52  Score=411.58  Aligned_cols=374  Identities=25%  Similarity=0.351  Sum_probs=314.5

Q ss_pred             chHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        28 ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .+.+.|.++++.+|+++|+++.  ++.+||.||.++++++|+.|.+ .|+++|++|+++++|+++++++++||+++|+++
T Consensus         3 ~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   80 (496)
T PRK06839          3 GIAYWIEKRAYLHPDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIA   80 (496)
T ss_pred             cHHHHHHHHHHHCCCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            4889999999999999999986  7999999999999999999975 799999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCC---cEEeccCCccccccccccCcccchhhHHhhhcCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP---AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (436)
                      +|+++..+.+++..+++.++++++++++.....+......   ..++..                .++.+......  . 
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~--~-  141 (496)
T PRK06839         81 VPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISI----------------TSLKEIEDRKI--D-  141 (496)
T ss_pred             EecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEe----------------cchHhhhccCC--C-
Confidence            9999999999999999999999999998776555443211   011110                11222222111  1 


Q ss_pred             CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcE
Q 013780          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (436)
Q Consensus       184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  263 (436)
                       ......++++++++|||||||.||+|.++|.++..++.........  ..++++++.+|++|.+|+....+.++..|++
T Consensus       142 -~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~  218 (496)
T PRK06839        142 -NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDL--TMHDRSIVLLPLFHIGGIGLFAFPTLFAGGV  218 (496)
T ss_pred             -CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCC--CCCCeEEEeeCCcchhhHHHHHHHHHhcCcE
Confidence             1223456889999999999999999999999987765544333333  2338999999999999998777899999999


Q ss_pred             EEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       264 v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      +++++.+++..+++.++++++|++.++|++++.+.+.......+++++|.+++||+++++++.+.+++.  ++++.+ .|
T Consensus       219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~-~Y  295 (496)
T PRK06839        219 IIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQ-GF  295 (496)
T ss_pred             EEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEe-ec
Confidence            999999999999999999999999999999999998876666778999999999999999999999987  499999 99


Q ss_pred             cccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccc
Q 013780          344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEH  423 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~  423 (436)
                      |+||++..++...........+++|+|+++++++|+|+ ++..++.|+.|||+++|+.++.|  |+++|+.+...+    
T Consensus       296 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~----  368 (496)
T PRK06839        296 GMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDE-NKNKVEVGEVGELLIRGPNVMKE--YWNRPDATEETI----  368 (496)
T ss_pred             cCCCCCcceEecccccccccCCCCcccCCCceEEEECC-CcCCCCCCCceEEEEECCCcchh--hcCChHHHHHHH----
Confidence            99999876554433322456789999999999999996 66779999999999999999999  999999998877    


Q ss_pred             cCCeeecCCCCC
Q 013780          424 TDSFIRGKDQQT  435 (436)
Q Consensus       424 ~~~~~~tgD~~~  435 (436)
                      .++||+|||+++
T Consensus       369 ~~g~~~TGDl~~  380 (496)
T PRK06839        369 QDGWLCTGDLAR  380 (496)
T ss_pred             cCCCeeecceEE
Confidence            578999999763

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-51  Score=412.72  Aligned_cols=385  Identities=25%  Similarity=0.354  Sum_probs=321.6

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      +|+.+.|.+.++++|+++|+.+.  ++.+||.||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|+++
T Consensus        17 ~n~~~~~~~~a~~~~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   94 (542)
T PRK07786         17 QNWVNQLARHALMQPDAPALRFL--GNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIA   94 (542)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            88999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchhhHHhhhcCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (436)
                      +|+++..+.+++..+++.++++++++++.....+....     .+.++...+         .......++.+++....  
T Consensus        95 vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--  163 (542)
T PRK07786         95 VPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGG---------SSDDSVLGYEDLLAEAG--  163 (542)
T ss_pred             EEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecC---------CCcccccCHHHHhhccC--
Confidence            99999999999999999999999999987665544332     122222111         11223345666554433  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCC
Q 013780          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (436)
Q Consensus       182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  261 (436)
                      ..........+++++++|||||||.||+|.++|+++..++........+ ....+++++..|++|.+|+. .++.++..|
T Consensus       164 ~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~~-~~~~~l~~G  241 (542)
T PRK07786        164 PAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGA-DINSDVGFVGVPLFHIAGIG-SMLPGLLLG  241 (542)
T ss_pred             CCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCC-CCCCceEEEecchHHHHHHH-HHHHHHHcc
Confidence            2223334556789999999999999999999999998877665444433 12348999999999999985 788999999


Q ss_pred             cEEEEcC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeee
Q 013780          262 NCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (436)
Q Consensus       262 ~~v~~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~  339 (436)
                      +++++.+  .+++..+++.++++++|+++++|+++..|.......... .++|.+++||+++++++++++++.|++.+++
T Consensus       242 ~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~  320 (542)
T PRK07786        242 APTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQIL  320 (542)
T ss_pred             CEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEE
Confidence            9999864  679999999999999999999999999998876544333 3799999999999999999999999889999


Q ss_pred             eccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhc
Q 013780          340 QVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW  419 (436)
Q Consensus       340 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~  419 (436)
                      + .||+||++++.+............++|+|++++.++|+| +++..++.|+.|||+++|+.++.|  |+++++.+...|
T Consensus       321 ~-~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~g--y~~~~~~~~~~f  396 (542)
T PRK07786        321 A-AFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSG--YWNNPEATAEAF  396 (542)
T ss_pred             e-eecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhh--hcCCHHHHHHHh
Confidence            9 999999987655443332235668999999999999999 488999999999999999999999  999999999888


Q ss_pred             cccccCCeeecCCCCC
Q 013780          420 GCEHTDSFIRGKDQQT  435 (436)
Q Consensus       420 ~~~~~~~~~~tgD~~~  435 (436)
                          .++||+|||+++
T Consensus       397 ----~~~~~~TGDl~~  408 (542)
T PRK07786        397 ----AGGWFHSGDLVR  408 (542)
T ss_pred             ----hCCcccccceEE
Confidence                478999999763

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.7e-51  Score=405.94  Aligned_cols=368  Identities=28%  Similarity=0.360  Sum_probs=310.4

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      +|+.++|.+++.++|+++|+++.  ++.+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   79 (483)
T PRK03640          2 ETMPNWLKQRAFLTPDRTAIEFE--EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVA   79 (483)
T ss_pred             CcHHHHHHHHHHhCCCceEEEeC--CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEE
Confidence            68999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +++++..+.+++..++++++++.+++++.....+.....                       ..++++...... .....
T Consensus        80 v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~-~~~~~  135 (483)
T PRK03640         80 VLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGIS-----------------------VKFAELMNGPKE-EAEIQ  135 (483)
T ss_pred             EecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhcc-----------------------ccHHHHhhcccc-cCCCC
Confidence            999999999999999999999999998765544322110                       012222222111 11222


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++++|||||||.||+|.++|.++...+........+.  ..+++++.+|++|++++. .++.++..|+++++
T Consensus       136 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~  212 (483)
T PRK03640        136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLT--EDDCWLAAVPIFHISGLS-ILMRSVIYGMRVVL  212 (483)
T ss_pred             CCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCC--cCcEEEEecCHHHHHHHH-HHHHHHhcCCEEEe
Confidence            345678999999999999999999999999988765554444443  339999999999999986 67888999999999


Q ss_pred             cCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccccc
Q 013780          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMT  346 (436)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~t  346 (436)
                      .+.+++..+++.++++++|++.++|+++..|.+..... ....+||.+++||+++++++++.+++.  ++++++ .||+|
T Consensus       213 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~-~YG~t  288 (483)
T PRK03640        213 VEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQ-SYGMT  288 (483)
T ss_pred             cCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeee-eeccC
Confidence            99999999999999999999999999999998764433 234689999999999999999999875  599999 99999


Q ss_pred             ccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCC
Q 013780          347 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS  426 (436)
Q Consensus       347 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~  426 (436)
                      |++..++.........+.+++|+|+++++++|.|+  +.+++.|+.|||+++|+.++.|  |+++++.+.+.|    .++
T Consensus       289 E~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~g--y~~~~~~~~~~~----~~~  360 (483)
T PRK03640        289 ETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKG--YLNREDATRETF----QDG  360 (483)
T ss_pred             cccccccccCcccccccCCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhh--hcCCHHHHHHHH----hcC
Confidence            98765554444333456789999999999999984  3789999999999999999999  999999999888    578


Q ss_pred             eeecCCCCC
Q 013780          427 FIRGKDQQT  435 (436)
Q Consensus       427 ~~~tgD~~~  435 (436)
                      ||+|||+++
T Consensus       361 ~~~tGDl~~  369 (483)
T PRK03640        361 WFKTGDIGY  369 (483)
T ss_pred             CeeccceEE
Confidence            999999763

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-51  Score=406.86  Aligned_cols=381  Identities=25%  Similarity=0.326  Sum_probs=316.4

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      +|+.+.|.++++++|+++|+++.  ++.+||.||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   79 (497)
T PRK06145          2 FNLSASIAFHARRTPDRAALVYR--DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVF   79 (497)
T ss_pred             ccHHHHHHHHHHHCCCceEEEEC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEE
Confidence            57899999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|+++..+.+++.++++.+++++++++++........ .....+...          ..   ..+..+.....  .....
T Consensus        80 v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~----------~~---~~~~~~~~~~~--~~~~~  143 (497)
T PRK06145         80 LPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALE-TPKIVIDAA----------AQ---ADSRRLAQGGL--EIPPQ  143 (497)
T ss_pred             EecccccCHHHHHHHHHhcCCcEEEEccchhhhhhcc-cceEEecCc----------cc---chhHHHhccCC--CCCCC
Confidence            9999999999999999999999999987665432211 111111100          00   00111111100  11112


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++++|||||||.||+|+++|.++...+........+.  .+++++...|++|.+++....+.++..|+++++
T Consensus       144 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~  221 (497)
T PRK06145        144 AAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLT--ASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRI  221 (497)
T ss_pred             CCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCC--CCcEEEEecCchhHhHHHHHHHHHHhccCEEEE
Confidence            334678999999999999999999999999987655443333332  338999999999999997667888999999999


Q ss_pred             cCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccccc
Q 013780          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMT  346 (436)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~t  346 (436)
                      .+.+++..+++.++++++|++.++|+++..+++.......+++++|.+++||+++++++.+++.+.|++.++++ .||+|
T Consensus       222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~-~YG~t  300 (497)
T PRK06145        222 HREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYID-AYGLT  300 (497)
T ss_pred             CCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEE-eecCc
Confidence            99999999999999999999999999999998876655667889999999999999999999999998899999 99999


Q ss_pred             ccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCC
Q 013780          347 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS  426 (436)
Q Consensus       347 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~  426 (436)
                      |+++..+.........+.+++|+|+++++++++|+ ++..++.|+.|||+++|++++.|  |+++++.+.+.|    .++
T Consensus       301 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~~~~Gel~v~g~~~~~G--y~~~~~~~~~~~----~~~  373 (497)
T PRK06145        301 ETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADG-AGRWLPPNMKGEICMRGPKVTKG--YWKDPEKTAEAF----YGD  373 (497)
T ss_pred             ccCCcceeccCccccccCCCcccCCCCceEEEECC-CCCCCCCCCceEEEEECcchhhh--hcCChHHHHHHH----hCC
Confidence            99876554433222345678999999999999995 78999999999999999999999  999999999888    478


Q ss_pred             eeecCCCCC
Q 013780          427 FIRGKDQQT  435 (436)
Q Consensus       427 ~~~tgD~~~  435 (436)
                      ||+|||+++
T Consensus       374 ~~~TGDl~~  382 (497)
T PRK06145        374 WFRSGDVGY  382 (497)
T ss_pred             CeeccceEE
Confidence            999999863

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=6e-51  Score=409.28  Aligned_cols=387  Identities=24%  Similarity=0.332  Sum_probs=316.0

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.++|.+.++++|+++|+++. +++.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        23 ~~l~~~~~~~~~~~pd~~a~~~~-~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~  101 (547)
T PRK06087         23 ASLADYWQQTARAMPDKIAVVDN-HGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVS  101 (547)
T ss_pred             CCHHHHHHHHHHHCCCceEEEcC-CCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence            67999999999999999999875 35799999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccch-----HHHHhh----cC-CCcEEeccCCccccccccccCcccchhhHHhh
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPEL-----WDKVKD----LN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~-----~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      +|++|.++.+++.++++.++++++++++..     ...+..    .. .+.++.... .       ........+.++..
T Consensus       102 v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~  173 (547)
T PRK06087        102 VPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDK-L-------APATSSLSLSQIIA  173 (547)
T ss_pred             eccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCC-c-------CCCcCccCHHHHhc
Confidence            999999999999999999999999997532     122211    11 112222211 0       01111224444443


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHh
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~  256 (436)
                      ...  ..........+++++|+|||||||.||+|+++|+++......+.....+.  ..+++++.+|++|.+++...++.
T Consensus       174 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~g~~~~~~~  249 (547)
T PRK06087        174 DYE--PLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLT--WQDVFMMPAPLGHATGFLHGVTA  249 (547)
T ss_pred             cCC--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCC--CCCeEEEecchHHHHHHHHHHHH
Confidence            322  11122334678999999999999999999999999988776655544443  33999999999999998878899


Q ss_pred             hccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCC
Q 013780          257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (436)
Q Consensus       257 ~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~  336 (436)
                      ++..|+++++.+.+++..+++.++++++|+++++|..+..+++.......+++++|.+++||+++++++.+.+.+.  ++
T Consensus       250 ~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~  327 (547)
T PRK06087        250 PFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GI  327 (547)
T ss_pred             HHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CC
Confidence            9999999999999999999999999999999998888877777655555678899999999999999999998875  59


Q ss_pred             eeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhh
Q 013780          337 TIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTL  416 (436)
Q Consensus       337 ~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~  416 (436)
                      ++++ .||+||++++..............++|+|+++++++++| +++.+++.|+.|||+++|+.++.|  |+++++.+.
T Consensus       328 ~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~g--y~~~~~~~~  403 (547)
T PRK06087        328 KLLS-VYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMG--YLDEPELTA  403 (547)
T ss_pred             cEEE-EecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEeccccccc--ccCCHHHHH
Confidence            9999 999999987766543322123456889999999999999 588999999999999999999999  999999988


Q ss_pred             hhccccccCCeeecCCCCC
Q 013780          417 FLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       417 ~~~~~~~~~~~~~tgD~~~  435 (436)
                      ..+   ..++||+|||+++
T Consensus       404 ~~~---~~~g~~~TGDl~~  419 (547)
T PRK06087        404 RAL---DEEGWYYSGDLCR  419 (547)
T ss_pred             HHh---CCCCCcCcCceEE
Confidence            776   3578999999763

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=4.4e-51  Score=411.58  Aligned_cols=392  Identities=26%  Similarity=0.367  Sum_probs=321.5

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .||.+.|.+.++++|+++|+++.+.+..+||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        16 ~~l~~~l~~~~~~~~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~   95 (559)
T PRK08315         16 QTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAIL   95 (559)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEE
Confidence            68999999999999999999987667899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchH-----HHHhhcCCC-----------------cEEeccCCcccccccccc
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDLNLP-----------------AVLLGSKDKVSSSGLISR  164 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~  164 (436)
                      +|++|..+.+++..+++.++++++++++...     +.+......                 ..++..+.        ..
T Consensus        96 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  167 (559)
T PRK08315         96 VTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD--------EK  167 (559)
T ss_pred             EecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc--------cC
Confidence            9999999999999999999999999986432     112111100                 00111010        01


Q ss_pred             CcccchhhHHhhhcCCC----CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEe
Q 013780          165 SSKIVSFHDLIELSGSV----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC  240 (436)
Q Consensus       165 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~  240 (436)
                      ..+...+.++.......    ..........+++++++|||||||.||+|.++|+++..++........+...  ++++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~--d~~~~  245 (559)
T PRK08315        168 HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEE--DRLCI  245 (559)
T ss_pred             CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCC--ceEEE
Confidence            12223444443322100    0111223457889999999999999999999999998887776655555333  89999


Q ss_pred             chhHHHHHHHHHHHHhhccCCcEEEEc-CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCC
Q 013780          241 VLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAA  319 (436)
Q Consensus       241 ~~p~~~~~g~~~~~~~~l~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~  319 (436)
                      .+|++|.+++...++.++..|+++++. ..+++..+++.++++++|+++++|+++..+..........+++||.+++||+
T Consensus       246 ~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~  325 (559)
T PRK08315        246 PVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGS  325 (559)
T ss_pred             ecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCC
Confidence            999999999987889999999999854 5789999999999999999999999999988876666667899999999999


Q ss_pred             CCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCC-CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEe
Q 013780          320 PLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR  398 (436)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~  398 (436)
                      +++.++.+++.+.++..++++ .||+||++.+++...... ...+..++|+|+++++++|+|++++++++.|+.|||+++
T Consensus       326 ~~~~~~~~~~~~~~~~~~l~~-~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~  404 (559)
T PRK08315        326 PCPIEVMKRVIDKMHMSEVTI-AYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTR  404 (559)
T ss_pred             CCCHHHHHHHHHHcCCcceeE-EEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEE
Confidence            999999999999998667999 999999987655443221 134578999999999999999877999999999999999


Q ss_pred             cCCcccCccccCChhhhhhhccccccCCeeecCCCC
Q 013780          399 GPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQ  434 (436)
Q Consensus       399 g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~  434 (436)
                      |++++.|  ||++|+.+...+   ..++||+|||+|
T Consensus       405 g~~~~~g--y~~~~~~~~~~~---~~~~~~~TGD~~  435 (559)
T PRK08315        405 GYSVMKG--YWNDPEKTAEAI---DADGWMHTGDLA  435 (559)
T ss_pred             Cchhhhh--hcCChhHHhhcC---CCCCCEEccceE
Confidence            9999999  999999988766   257899999976

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-51  Score=409.01  Aligned_cols=377  Identities=20%  Similarity=0.234  Sum_probs=307.3

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.++|.++++++|+++|+++.  +..+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  120 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE--LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADI  120 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEE
Confidence            68999999999999999999986  6799999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccCCccccccccccCcccchhhHHhhhcCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (436)
                      +|+++.++.+++.++++.++++++|++......+....    ....++....          ......++++.....  .
T Consensus       121 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~  188 (537)
T PRK13382        121 LLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTD----------EDHDLTVEVLIAAHA--G  188 (537)
T ss_pred             EecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecC----------CcccccHHHHhhccC--c
Confidence            99999999999999999999999999987655443321    0111111110          001123333333221  1


Q ss_pred             CCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCc
Q 013780          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (436)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  262 (436)
                      .  .....+++.++++|||||||.||+|+++|.++..+.........+..  .++++...|++|.+++. .++.++..|+
T Consensus       189 ~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~g~~-~~~~~l~~g~  263 (537)
T PRK13382        189 Q--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRA--EEPTVIVAPMFHAWGFS-QLVLAASLAC  263 (537)
T ss_pred             C--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCC--CCeEEEecChHhhhHHH-HHHHHHhcCc
Confidence            1  11224678899999999999999999999988877665544443333  38899999999999985 7888899999


Q ss_pred             EEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (436)
Q Consensus       263 ~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~  340 (436)
                      ++++...+++..+++.|+++++|++.++|+++..|.+....  ...+++++|.+++||+++++++.++|.+.++ ..+++
T Consensus       264 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~  342 (537)
T PRK13382        264 TIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIYN  342 (537)
T ss_pred             EEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC-CcEEe
Confidence            99999999999999999999999999999999999876532  2335678999999999999999999999998 78999


Q ss_pred             ccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780          341 VGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  420 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~  420 (436)
                       .||+||++.+++..... ....++++|+|+++++++|+|+ ++++++.|+.|||+++|+.++.|  |+  ++.+...  
T Consensus       343 -~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~g--Y~--~~~~~~~--  413 (537)
T PRK13382        343 -NYNATEAGMIATATPAD-LRAAPDTAGRPAEGTEIRILDQ-DFREVPTGEVGTIFVRNDTQFDG--YT--SGSTKDF--  413 (537)
T ss_pred             -cccccccCcceecChhH-hccCCCCccccCcCcEEEEECC-CCCCCCCCCeeEEEEEcCCcccC--cc--ccchhhc--
Confidence             99999998766543322 1346789999999999999995 88999999999999999999999  98  4554432  


Q ss_pred             ccccCCeeecCCCCC
Q 013780          421 CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ~~~~~~~~~tgD~~~  435 (436)
                         .++||+|||+++
T Consensus       414 ---~~g~~~TGDl~~  425 (537)
T PRK13382        414 ---HDGFMASGDVGY  425 (537)
T ss_pred             ---cCCCEeeCceEE
Confidence               267999999763

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=7.1e-51  Score=406.81  Aligned_cols=383  Identities=21%  Similarity=0.267  Sum_probs=312.6

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.+.|.++++++|+++|+++.  ++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        23 ~~l~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~  100 (527)
T TIGR02275        23 KPLTDILRDQAARYPDAIAIICG--NRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAP  100 (527)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEE
Confidence            67999999999999999999986  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchH--------HHHhhcC--CCcEEeccCCccccccccccCcccchhhHHhh
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      +++++..+.+++.++++.++++++++++...        +.+....  ....++..+.           .....+.....
T Consensus       101 v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  169 (527)
T TIGR02275       101 VLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQT-----------RVEAELFLWLE  169 (527)
T ss_pred             eccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCC-----------CCcchhhHHhh
Confidence            9999999999999999999999999986531        1111111  1111111110           00001111111


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH-HHH
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~  255 (436)
                      ...  .........++++++++|||||||.||+|+++|.++..+.........+..  ++++++.+|++|.+++.. .++
T Consensus       170 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~d~~l~~~P~~h~~~~~~~~~~  245 (527)
T TIGR02275       170 SPA--EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQ--QTRYLCALPAAHNYPLSSPGAL  245 (527)
T ss_pred             CcC--ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCc--CCEEEECCChHhhhhhhHHHHH
Confidence            111  112223456789999999999999999999999999888776555544433  399999999999999864 478


Q ss_pred             hhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCC
Q 013780          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (436)
Q Consensus       256 ~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~  335 (436)
                      .++..|+++++.+++++..+++.++++++|++.++|+++..+.+.......+++++|.+++||+++++++.+++.+.++ 
T Consensus       246 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-  324 (527)
T TIGR02275       246 GVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFG-  324 (527)
T ss_pred             HHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhC-
Confidence            8899999999998889999999999999999999999999998877666677889999999999999999999999997 


Q ss_pred             CeeeeccccccccCCcccccCCCCCccCcCcccccc-CCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhh
Q 013780          336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVF  414 (436)
Q Consensus       336 ~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~  414 (436)
                      .++++ .||+||++..... .........+++|+|+ ++.+++|+| ++++++++|+.|||+++|+.++.|  ||++++.
T Consensus       325 ~~~~~-~YG~tE~~~~~~~-~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~g--Y~~~~~~  399 (527)
T TIGR02275       325 CQLQQ-VFGMAEGLVNYTR-LDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRG--YYKAPEH  399 (527)
T ss_pred             CeEEe-eeccCccCccccC-CCCccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchh--hcCChhH
Confidence            99999 9999996543322 1111134567899999 588999999 488999999999999999999999  9999999


Q ss_pred             hhhhccccccCCeeecCCCCC
Q 013780          415 TLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       415 ~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +...+   +.++||+|||+|+
T Consensus       400 ~~~~~---~~dg~~~TGDl~~  417 (527)
T TIGR02275       400 NAAAF---DAEGFYYTGDLVR  417 (527)
T ss_pred             hHhhc---CcCCCEEcCceEE
Confidence            88876   3578999999763

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-51  Score=424.74  Aligned_cols=367  Identities=22%  Similarity=0.302  Sum_probs=301.3

Q ss_pred             CchHHHHhhhccc--CCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 013780           27 FSMVHFLFRNSAS--YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (436)
Q Consensus        27 ~ti~~~l~~~~~~--~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~  104 (436)
                      .|+.++|.++++.  +|+++|+++.   ..+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++||+++|+
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~   80 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA---DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGV   80 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec---CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence            4689999988876  7999999864   4799999999999999999999999999999999999999999999999999


Q ss_pred             eEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCC
Q 013780          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI  184 (436)
Q Consensus       105 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (436)
                      +++|++|.++.+++.+++++++++++|++....+.+....    ++                   ...+++.........
T Consensus        81 ~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~~  137 (705)
T PRK06060         81 MAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSR----VA-------------------EAAELMSEAARVAPG  137 (705)
T ss_pred             EEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccc----cc-------------------hhhhhhhhccccCCC
Confidence            9999999999999999999999999999876544332110    00                   011111110000011


Q ss_pred             CCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHH-hhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcE
Q 013780          185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (436)
Q Consensus       185 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  263 (436)
                      ......++++++++|||||||.||+|+++|+++..+...+. ..+.+.  ..+++++..|++|.+++...++.++..|++
T Consensus       138 ~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~--~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~  215 (705)
T PRK06060        138 GYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLT--PEDTGLCSARMYFAYGLGNSVWFPLATGGS  215 (705)
T ss_pred             CCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCC--CcceeEEeccchhhcchhHHHHHHHhcCCE
Confidence            11233568899999999999999999999999988765443 223332  238999999999999886678889999999


Q ss_pred             EEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780          264 VVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG  342 (436)
Q Consensus       264 v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~  342 (436)
                      +++.+ .+++..++..++++++|+++++|+++..+.+...  ...+++||.+++||+++++++.+++.+.|++.++++ .
T Consensus       216 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~-~  292 (705)
T PRK06060        216 AVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILD-G  292 (705)
T ss_pred             EEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEe-e
Confidence            99986 5788999999999999999999999999987543  235789999999999999999999999998799999 9


Q ss_pred             ccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780          343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  422 (436)
Q Consensus       343 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~  422 (436)
                      ||+||++..+......  ..+.+++|+|+++++++|+|+ +++++++|+.|||+++|++++.|  ||++|+.+.      
T Consensus       293 YG~tE~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d~-~g~~~~~g~~GEl~i~g~~v~~G--Y~~~~~~~~------  361 (705)
T PRK06060        293 IGSTEVGQTFVSNRVD--EWRLGTLGRVLPPYEIRVVAP-DGTTAGPGVEGDLWVRGPAIAKG--YWNRPDSPV------  361 (705)
T ss_pred             eeccccCceEEeccCC--CCCcCcccccCCCcEEEEECC-CCCCCCCCCceEEEEccchhhhh--hhCCCcccc------
Confidence            9999997655433222  345778999999999999995 78999999999999999999999  999998643      


Q ss_pred             ccCCeeecCCCCC
Q 013780          423 HTDSFIRGKDQQT  435 (436)
Q Consensus       423 ~~~~~~~tgD~~~  435 (436)
                      ..++||+|||+|+
T Consensus       362 ~~~~~~~TGDl~~  374 (705)
T PRK06060        362 ANEGWLDTRDRVC  374 (705)
T ss_pred             cCCCcEECCeeEE
Confidence            2478999999874

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=5.8e-51  Score=443.11  Aligned_cols=395  Identities=25%  Similarity=0.345  Sum_probs=321.1

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.+.+.+.++++|+++|+++. .++.+||+||.++++++|+.|.+ ++++||+|+++++|+++++++++||+++|+++
T Consensus       615 ~~l~~~~~~~a~~~p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~  692 (1146)
T PRK08633        615 PPLAEAWIDTAKRNWSRLAVADS-TGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGKVP  692 (1146)
T ss_pred             CCHHHHHHHHHHhcCCCcEEEcC-CCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCCEE
Confidence            78999999999999999999875 35799999999999999999987 58999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhc------CCCcEEeccCCccccccccccCcccchhhHHhhhcCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (436)
                      +|++|..+.+++.+++++++++++++++...+.+...      .....++..++..      ........+.+.......
T Consensus       693 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  766 (1146)
T PRK08633        693 VNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK------AKISKVDKLTALLAARLL  766 (1146)
T ss_pred             EEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc------cccchhHHHHHHHHhccC
Confidence            9999999999999999999999999998777666431      1111111111100      000011112222111100


Q ss_pred             CC----CCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHh
Q 013780          181 VT----DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (436)
Q Consensus       181 ~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~  256 (436)
                      ..    ........++++++++|||||||.||+|.+||+++..++...........  +|++++.+|++|.+++...++.
T Consensus       767 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~d~~l~~~p~~h~~g~~~~~~~  844 (1146)
T PRK08633        767 PARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRN--DDVILSSLPFFHSFGLTVTLWL  844 (1146)
T ss_pred             CHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCC--CCEEEEcCcHHHHHhHHHHHHH
Confidence            00    00013456789999999999999999999999999988776655554433  3999999999999999866889


Q ss_pred             hccCCcEEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCC
Q 013780          257 QLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (436)
Q Consensus       257 ~l~~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~  335 (436)
                      ++..|+++++.+ ++++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++||+++++++.+++++.++ 
T Consensus       845 ~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g-  923 (1146)
T PRK08633        845 PLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFG-  923 (1146)
T ss_pred             HHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhC-
Confidence            999999998875 579999999999999999999999999998876666667899999999999999999999999997 


Q ss_pred             CeeeeccccccccCCcccccCCCC--------CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCcc
Q 013780          336 ATIFQVGYGMTETCAPISLENPLV--------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV  407 (436)
Q Consensus       336 ~~i~~~~YG~tE~~~~~~~~~~~~--------~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~  407 (436)
                      .++++ .||+||++++++...++.        ...+++++|+|+|+++++|+|+++++++++|+.|||+++|++++.|  
T Consensus       924 ~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g-- 1000 (1146)
T PRK08633        924 IRILE-GYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKG-- 1000 (1146)
T ss_pred             CCeec-ccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCcccc--
Confidence            99999 999999987766543221        1235789999999999999998889999999999999999999999  


Q ss_pred             ccCChhhhhhhccccccCCeeecCCCCC
Q 013780          408 YINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       408 Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |+++|+.+.+.+.-.+.++||+|||+|+
T Consensus      1001 Y~~~~~~t~~~~~~~~~~~~~~TGD~~~ 1028 (1146)
T PRK08633       1001 YLGDPEKTAEVIKDIDGIGWYVTGDKGH 1028 (1146)
T ss_pred             ccCCccchHHHhhcCCCCCeEECCCEEE
Confidence            9999999998873222348999999864

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.3e-50  Score=403.20  Aligned_cols=382  Identities=26%  Similarity=0.351  Sum_probs=317.8

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      +.+|.+.|.+++ .+|+++|+.+. ++..+||.||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~-~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~   79 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETP-DGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAV   79 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeC-CCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            367999999999 99999999874 3689999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCC---cEEeccCCccccccccccCcccchhhHHhhhcCCCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP---AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (436)
                      ++|+++.++.+++..+++.++++++++++...+.+......   ..++..+.           .....+.+......  .
T Consensus        80 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~--~  146 (504)
T PRK07514         80 FLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDA-----------DGTGSLLEAAAAAP--D  146 (504)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecC-----------CCcccHHHhhhhcC--c
Confidence            99999999999999999999999999998776655443211   10111110           00011222221111  2


Q ss_pred             CCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCc
Q 013780          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (436)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  262 (436)
                      ........++++++|+|||||||.||+|.++|+++...+........+..  .+++++.+|++|..++...++.++..|+
T Consensus       147 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~g~~~~~~~~l~~G~  224 (504)
T PRK07514        147 DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTP--DDVLIHALPIFHTHGLFVATNVALLAGA  224 (504)
T ss_pred             ccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCC--ccEEEEecchHHHHHHHHHHHHHHhcCc
Confidence            22234456789999999999999999999999999988776655554433  3899999999999999877889999999


Q ss_pred             EEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG  342 (436)
Q Consensus       263 ~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~  342 (436)
                      ++++.+.+++..+++.+  .++|++.++|+++..+.+........++++|.+++||+++++++.++|++.++ .++++ .
T Consensus       225 ~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~-~  300 (504)
T PRK07514        225 SMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTG-HAILE-R  300 (504)
T ss_pred             EEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhC-Cccee-e
Confidence            99999989999999999  47999999999999998876666667889999999999999999999999987 89999 9


Q ss_pred             ccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780          343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  422 (436)
Q Consensus       343 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~  422 (436)
                      ||+||++.........  .....++|.|+++++++|+|++++++++.|+.|||+++|+.++.|  |+++++.+.+.|   
T Consensus       301 YG~tE~~~~~~~~~~~--~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~g--y~~~~~~~~~~~---  373 (504)
T PRK07514        301 YGMTETNMNTSNPYDG--ERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKG--YWRMPEKTAEEF---  373 (504)
T ss_pred             cccccccccccCCccc--cccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCcccc--ccCCchhhhhhc---
Confidence            9999987654432211  445678999999999999998899999999999999999999999  999999988777   


Q ss_pred             ccCCeeecCCCCC
Q 013780          423 HTDSFIRGKDQQT  435 (436)
Q Consensus       423 ~~~~~~~tgD~~~  435 (436)
                      ..++||+|||+++
T Consensus       374 ~~~~~~~TGDl~~  386 (504)
T PRK07514        374 RADGFFITGDLGK  386 (504)
T ss_pred             ccCCCeeecceEE
Confidence            2478999999863

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-50  Score=408.49  Aligned_cols=392  Identities=24%  Similarity=0.341  Sum_probs=319.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.+.|.+.++++|+++|+++.+.++.+||.||.+++.++|+.|.+.|+++|++|+|+++|+++++++++||+++|+++
T Consensus        18 ~~l~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~   97 (558)
T PRK12583         18 QTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAIL   97 (558)
T ss_pred             CcHHHHHHHHHHHCCCCeEEEecCCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEE
Confidence            67999999999999999999987667899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchH-----HHHhhcCCC-----------------cEEeccCCcccccccccc
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDLNLP-----------------AVLLGSKDKVSSSGLISR  164 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~  164 (436)
                      +++++.++.+++.++++.++++++|+++...     ..+......                 ..++..+.        ..
T Consensus        98 v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  169 (558)
T PRK12583         98 VNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAP--------AP  169 (558)
T ss_pred             EecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecC--------CC
Confidence            9999999999999999999999999976431     111111000                 00110010        01


Q ss_pred             CcccchhhHHhhhcCCC----CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEe
Q 013780          165 SSKIVSFHDLIELSGSV----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC  240 (436)
Q Consensus       165 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~  240 (436)
                      ......+++........    .........++++++++|||||||.||+|.++|.++..++........+..  ++++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~d~~~~  247 (558)
T PRK12583        170 PPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTE--HDRLCV  247 (558)
T ss_pred             CccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCC--CCeEEE
Confidence            11223344333222110    011123345788999999999999999999999999888776655554433  389999


Q ss_pred             chhHHHHHHHHHHHHhhccCCcEEEEc-CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCC
Q 013780          241 VLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAA  319 (436)
Q Consensus       241 ~~p~~~~~g~~~~~~~~l~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~  319 (436)
                      ..|++|.+|....++.++..|++++++ ..+++..+++.++++++|+++++|+++..+.........+++++|.+++||+
T Consensus       248 ~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~  327 (558)
T PRK12583        248 PVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGA  327 (558)
T ss_pred             ecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCC
Confidence            999999999988899999999999976 4679999999999999999999999999888776656667899999999999


Q ss_pred             CCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCC-CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEe
Q 013780          320 PLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR  398 (436)
Q Consensus       320 ~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~  398 (436)
                      ++++++.+++.+.++...+++ .||+||+++++....... ...+..++|+|++++.++|+|+ ++.+++.|+.|||+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~-~~~~~~~g~~Gel~v~  405 (558)
T PRK12583        328 PCPIEVMRRVMDEMHMAEVQI-AYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDP-DGATVPRGEIGELCTR  405 (558)
T ss_pred             CCCHHHHHHHHHHcCCcceec-cccccccccceeccCcccccccccCCCCccCCCCeEEEECC-CCCCCCCCCeeEEEEE
Confidence            999999999999998678999 999999988766543221 1345789999999999999997 4899999999999999


Q ss_pred             cCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          399 GPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       399 g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |+.++.|  |+++++.+.+.+   ..++||+|||+|+
T Consensus       406 g~~~~~g--y~~~~~~~~~~~---~~~~~~~TGDl~~  437 (558)
T PRK12583        406 GYSVMKG--YWNNPEATAESI---DEDGWMHTGDLAT  437 (558)
T ss_pred             eCccchh--hcCChHHHHhhc---CCCCCeeccceEE
Confidence            9999999  999999988765   2478999999863

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-50  Score=403.71  Aligned_cols=389  Identities=30%  Similarity=0.421  Sum_probs=328.4

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      +.++.++|.+.++.+|+++|+.+.  +..+||+||++++.++|+.|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus         5 ~~~l~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~   82 (521)
T PRK06187          5 PLTIGRILRHGARKHPDKEAVYFD--GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV   82 (521)
T ss_pred             cCCHHHHHHHHHHHCCCceEEEeC--CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            378999999999999999999988  667999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchhhHHhhhcCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (436)
                      ++++++.++.+++..+++.+++++++++....+.+....     .+.+++..+....     ........+.+++.... 
T Consensus        83 ~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-  156 (521)
T PRK06187         83 LHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA-----PLAPEVGEYEELLAAAS-  156 (521)
T ss_pred             EEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc-----ccccccccHHHHhhcCC-
Confidence            999999999999999999999999999988766655432     1223322221100     12234455666655443 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  260 (436)
                       ..........+++++++|||||||.||+|.++|.++............+..  .+++++.+|++|.+++. ..+.++..
T Consensus       157 -~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~-~~~~~l~~  232 (521)
T PRK06187        157 -DTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSR--DDVYLVIVPMFHVHAWG-LPYLALMA  232 (521)
T ss_pred             -ccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCC--CCEEEEeCCchHHhhHH-HHHHHHHh
Confidence             233344556788999999999999999999999999887766555444433  39999999999999986 44559999


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (436)
Q Consensus       261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~  340 (436)
                      |+++++.+.+++..+++.++++++|+++++|+++..|.+.......+++++|.+++||+++++++.+++.+.++ +++++
T Consensus       233 G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~-~~v~~  311 (521)
T PRK06187        233 GAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFG-IDLVQ  311 (521)
T ss_pred             CCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhC-cchhe
Confidence            99999998889999999999999999999999999999988776778899999999999999999999999995 99999


Q ss_pred             ccccccccCCcccccCCCCC----ccCcCccccccCCcEEEEEeCCCCccCCC--CCceEEEEecCCcccCccccCChhh
Q 013780          341 VGYGMTETCAPISLENPLVG----VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPGIVYINFFVF  414 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~--g~~Gel~v~g~~~~~g~~Y~~~~~~  414 (436)
                       .||+||+++++........    .....++|+|+++++++|+|+ ++.+++.  |+.|||+++|+.++.|  |+++++.
T Consensus       312 -~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~~~g~~Gel~v~~~~~~~~--y~~~~~~  387 (521)
T PRK06187        312 -GYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDD-DGDELPPDGGEVGEIIVRGPWLMQG--YWNRPEA  387 (521)
T ss_pred             -eeccCccCcccccCCcccccccccccCCccccccCCeEEEEECC-CCCCCCCCCCCeeEEEEECcchhhh--hcCCHHH
Confidence             9999999877666543321    126789999999999999995 7888888  9999999999999999  9999999


Q ss_pred             hhhhccccccCCeeecCCCCC
Q 013780          415 TLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       415 ~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +.+.|    .++||+|||+++
T Consensus       388 ~~~~~----~~~~~~tGD~~~  404 (521)
T PRK06187        388 TAETI----DGGWLHTGDVGY  404 (521)
T ss_pred             HHHHh----hCCceeccceEE
Confidence            99888    467999999764

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.4e-51  Score=417.12  Aligned_cols=383  Identities=23%  Similarity=0.305  Sum_probs=299.7

Q ss_pred             CCCchHHHHhhhcccCCCceEEEeCC-----C--CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHH
Q 013780           25 PSFSMVHFLFRNSASYSSKLALIDAD-----S--DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL   97 (436)
Q Consensus        25 ~~~ti~~~l~~~~~~~p~~~a~~~~~-----~--~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~l   97 (436)
                      ++.|+.+.|.+.++.+|+++|+++.+     .  ...+||+||.++++++|+.|.+. +++||+|+|+++|++++++++|
T Consensus        19 ~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~l   97 (631)
T PRK07769         19 PNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFF   97 (631)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHH
Confidence            33789999999999999999998642     1  25799999999999999999886 8999999999999999999999


Q ss_pred             HHHHhCCeEeec-CCCCC--HHHHHHHHHhcCCcEEEEccchHHHHhhcCC------CcEEeccCCccccccccccCccc
Q 013780           98 GVIAIGAIASTA-NPVYT--VSELSKQVKDSNPKLVITVPELWDKVKDLNL------PAVLLGSKDKVSSSGLISRSSKI  168 (436)
Q Consensus        98 A~~~~G~~~v~l-~~~~~--~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  168 (436)
                      ||+++|++++|+ ++..+  .+++.++++.++++++|+++...+.+.....      ...++..+.              
T Consensus        98 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  163 (631)
T PRK07769         98 GALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDA--------------  163 (631)
T ss_pred             HHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccc--------------
Confidence            999999999999 55554  6789999999999999999876554433210      001111110              


Q ss_pred             chhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHH
Q 013780          169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVF  248 (436)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  248 (436)
                        +.+..   .  .........++++++|+|||||||.||+|++||+++..++........+.  .++++++.+|++|.+
T Consensus       164 --~~~~~---~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~Pl~h~~  234 (631)
T PRK07769        164 --VPDEV---G--ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQ--EGDRGVSWLPFFHDM  234 (631)
T ss_pred             --ccccc---c--cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCC--CcceEEEeCCCcCch
Confidence              00000   0  01111234578999999999999999999999999998776655544443  338999999999999


Q ss_pred             HHHHHHHhhccCCcEEEEcCC--C--CHHHHHHHHHHhcc---eEEEecHHHHHHHHhc---ccc--CccCCCcceEEEe
Q 013780          249 GLSVILYDQLQKGNCVVSMGK--F--DIEMALRAIEKYRV---TVWWVVPPIILALAKN---SLV--RKFDISSLKLVGS  316 (436)
Q Consensus       249 g~~~~~~~~l~~G~~v~~~~~--~--~~~~~~~~l~~~~~---t~l~~~p~~~~~l~~~---~~~--~~~~l~~lr~i~~  316 (436)
                      |+. .++.++..|+++++.++  +  ++..+++.++++++   +.+.++|.++..+...   ...  ...++++||.+++
T Consensus       235 gl~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~  313 (631)
T PRK07769        235 GLI-TVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLN  313 (631)
T ss_pred             hhH-HHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEe
Confidence            997 45666778988888753  4  89999999999886   7899999988776653   111  1357889999999


Q ss_pred             cCCCCcHHHHHHHHhhCC-----CCeeeeccccccccCCcccccCCCCC-------------------------ccCcCc
Q 013780          317 GAAPLGKELMEDCQKNIP-----GATIFQVGYGMTETCAPISLENPLVG-------------------------VRRSGS  366 (436)
Q Consensus       317 gg~~l~~~~~~~~~~~~~-----~~~i~~~~YG~tE~~~~~~~~~~~~~-------------------------~~~~~~  366 (436)
                      ||+++++++.++|.+.|+     ...+++ .||+||++.+++..+....                         .....+
T Consensus       314 gg~~l~~~~~~~~~~~~~~~g~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s  392 (631)
T PRK07769        314 GSEPVSPASMRKFNEAFAPYGLPPTAIKP-SYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVS  392 (631)
T ss_pred             ccCCCCHHHHHHHHHHHhhcCCChhhccc-ccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEe
Confidence            999999999999999873     235888 9999998776554332210                         011357


Q ss_pred             cccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccc--------------cccCCeeecCC
Q 013780          367 AGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC--------------EHTDSFIRGKD  432 (436)
Q Consensus       367 ~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~--------------~~~~~~~~tgD  432 (436)
                      +|+|+++.+++|+|++++++++.|+.|||+++|++++.|  ||++++.+.+.|.-              -..++||+|||
T Consensus       393 ~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~G--Y~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGD  470 (631)
T PRK07769        393 AGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTG--YWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGD  470 (631)
T ss_pred             CCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCcccc--ccCChhHHHHHHhhhcccccccccccCcccCCCeeeccc
Confidence            999999999999998789999999999999999999999  99999999988721              12358999999


Q ss_pred             CCC
Q 013780          433 QQT  435 (436)
Q Consensus       433 ~~~  435 (436)
                      +|+
T Consensus       471 lg~  473 (631)
T PRK07769        471 YGV  473 (631)
T ss_pred             ccc
Confidence            985

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=2.4e-50  Score=403.93  Aligned_cols=385  Identities=22%  Similarity=0.272  Sum_probs=312.5

Q ss_pred             CchHHHHhhhcccCCCceEEEeCC----CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 013780           27 FSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~  102 (436)
                      .|+.+.+.+.++.+|+++|++..+    .+..+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++
T Consensus        22 ~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~  101 (538)
T TIGR03208        22 RTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI  101 (538)
T ss_pred             CcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            679999999999999999998521    2368999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchH-----HHHhhc----C-CCcEEeccCCccccccccccCcccchhh
Q 013780          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFH  172 (436)
Q Consensus       103 G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (436)
                      |+++++++|.++.+++.++++.++++++++++...     ......    . .+.+++...            .+...++
T Consensus       102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~  169 (538)
T TIGR03208       102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDG------------DGDDSFD  169 (538)
T ss_pred             CEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecC------------CCCcCHH
Confidence            99999999999999999999999999999987542     111111    1 112222111            0111233


Q ss_pred             HHhhhcCCC--CC----CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHH
Q 013780          173 DLIELSGSV--TD----IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH  246 (436)
Q Consensus       173 ~~~~~~~~~--~~----~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  246 (436)
                      .++......  ..    .......++++++++|||||||.||+|+++|+++...+........+..  ++++++.+|++|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~--~d~~l~~~pl~h  247 (538)
T TIGR03208       170 RVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGG--GDVILMASPMAH  247 (538)
T ss_pred             HHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCC--CCeEEEeCCchh
Confidence            332211100  00    1122356789999999999999999999999999888776655554433  399999999999


Q ss_pred             HHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHH
Q 013780          247 VFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM  326 (436)
Q Consensus       247 ~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~  326 (436)
                      .+++...++.++..|+++++.+.+++..+++.++++++|++.++|.++..+..........++++|.+++||+++++++.
T Consensus       248 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~  327 (538)
T TIGR03208       248 QTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILV  327 (538)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHH
Confidence            99987788999999999999988999999999999999999999999999887654445578899999999999999999


Q ss_pred             HHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCc
Q 013780          327 EDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGI  406 (436)
Q Consensus       327 ~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~  406 (436)
                      +++.+.++ +++++ .||+||++++.+............++|+|+++++++|+|+ ++.+++.|+.|||+++|+.++.| 
T Consensus       328 ~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~-~~~~~~~g~~Gel~v~g~~~~~g-  403 (538)
T TIGR03208       328 ERAWELLG-ALIVS-AWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDA-NGAKLSQGETGRLLVRGCSNFGG-  403 (538)
T ss_pred             HHHHHHcC-CeEEe-eeccCcCCCccccCcccchhhccCcccccCCCCEEEEECC-CCCCCcCCCCcEEEEecCccccc-
Confidence            99999987 89999 9999999876654433211223568999999999999994 78999999999999999999999 


Q ss_pred             cccCChhhhhhhccccccCCeeecCCCCC
Q 013780          407 VYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       407 ~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                       |+++|+.+..     ..++||+|||+|+
T Consensus       404 -y~~~~~~~~~-----~~~~~~~TGD~~~  426 (538)
T TIGR03208       404 -YLKRPHLNST-----DAEGWFDTGDLAF  426 (538)
T ss_pred             -ccCCcccccc-----cCCCceeccceEE
Confidence             9999987653     2578999999873

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.6e-50  Score=403.72  Aligned_cols=397  Identities=24%  Similarity=0.389  Sum_probs=314.2

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      .|+.+.|.++++++|+++|++..  ++.+||.||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++|++
T Consensus        24 ~~~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v  101 (562)
T PRK12492         24 KSVVEVFERSCKKFADRPAFSNL--GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLI  101 (562)
T ss_pred             CcHHHHHHHHHHhCCCCeeEecC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeE
Confidence            57999999999999999999876  68999999999999999999885 9999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC----CcEEecc-CCccccc-c--------------ccccC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----PAVLLGS-KDKVSSS-G--------------LISRS  165 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~-~--------------~~~~~  165 (436)
                      ++++++.++.+++.++++.++++++++++...+.+.....    ...+... ....... .              .....
T Consensus       102 ~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (562)
T PRK12492        102 VVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPAYHL  181 (562)
T ss_pred             EeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccccCC
Confidence            9999999999999999999999999998755443322110    1111000 0000000 0              00000


Q ss_pred             cccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhcc--------CCCCcE
Q 013780          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV--------GELDHV  237 (436)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~--------~~~~~~  237 (436)
                      .....+++....... ..........+++++|+|||||||.||+|+++|+++..+.......+...        ...+++
T Consensus       182 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (562)
T PRK12492        182 PQAVPFKQALRQGRG-LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEV  260 (562)
T ss_pred             cccccHHHHHhccCC-CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeE
Confidence            112234444332211 11222345678899999999999999999999999987766554443211        111267


Q ss_pred             EEechhHHHHHHHHHHHHhhccCCcEEEEc-CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEe
Q 013780          238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS  316 (436)
Q Consensus       238 ~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~  316 (436)
                      +++.+|++|.+++...++..+..|.++++. .++++..+++.++++++|++.++|+++..|.+.......+++++|.+++
T Consensus       261 ~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~  340 (562)
T PRK12492        261 MIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNS  340 (562)
T ss_pred             EEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEe
Confidence            889999999999876777888888877665 4678999999999999999999999999999887666667899999999


Q ss_pred             cCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEE
Q 013780          317 GAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW  396 (436)
Q Consensus       317 gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~  396 (436)
                      ||+++++++.++|.+.++ +++++ .||+||++++++...... ..+.+++|+|+++++++|+|+ ++.++++|+.|||+
T Consensus       341 gG~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~ivd~-~~~~~~~g~~Gel~  416 (562)
T PRK12492        341 GGTALVKATAERWEQLTG-CTIVE-GYGLTETSPVASTNPYGE-LARLGTVGIPVPGTALKVIDD-DGNELPLGERGELC  416 (562)
T ss_pred             ccccCCHHHHHHHHHHhC-Cceee-ccCccccCceeeecCCcc-cccCCccceecCCCEEEEECC-CCCCCCCCCceEEE
Confidence            999999999999999887 99999 999999987665443321 345688999999999999995 88999999999999


Q ss_pred             EecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          397 VRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       397 v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ++|+.++.|  ||++|+.+.+.|.   .++||+|||+|+
T Consensus       417 v~g~~~~~g--Y~~~~~~t~~~~~---~~g~~~TGD~g~  450 (562)
T PRK12492        417 IKGPQVMKG--YWQQPEATAEALD---AEGWFKTGDIAV  450 (562)
T ss_pred             EeCCccccc--cccCchhhhhccc---CCCceecCcEEE
Confidence            999999999  9999999988763   468999999863

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-50  Score=410.19  Aligned_cols=406  Identities=22%  Similarity=0.268  Sum_probs=308.5

Q ss_pred             CCcCCCCCCCch-HHHHhhhcccCCCceEEEeCC----CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH
Q 013780           18 PLVLPSDPSFSM-VHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF   92 (436)
Q Consensus        18 ~~~~~~~~~~ti-~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~   92 (436)
                      ..|+++. ..|+ .+.|.++++.+|+++|+++..    ..+.+||+||.+++.++|+.|++.|+++||+|+++++|++++
T Consensus        44 ~~wf~~~-~~n~~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~  122 (629)
T PRK10524         44 ARWFVGG-RTNLCHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEA  122 (629)
T ss_pred             CccCCCc-EeeHHHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            3566653 3666 445667788899999998632    236899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchH---------HHHh---h-c--CCCcEEeccCCccc
Q 013780           93 PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVK---D-L--NLPAVLLGSKDKVS  157 (436)
Q Consensus        93 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~---~-~--~~~~~~~~~~~~~~  157 (436)
                      ++++|||+++|+++++++|.++.+++.+++++++++++|+++...         +.+.   . .  ....+++.......
T Consensus       123 ~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~  202 (629)
T PRK10524        123 AFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAP  202 (629)
T ss_pred             HHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence            999999999999999999999999999999999999999976421         1111   1 1  11222222111000


Q ss_pred             cccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhh-HHhhhhccCCCCc
Q 013780          158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM-ISAHQELVGELDH  236 (436)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~  236 (436)
                         ..........+.++...... .........++++++|+|||||||.||+|+++|.++...... ......+  ..++
T Consensus       203 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~--~~~d  276 (629)
T PRK10524        203 ---MARVAGRDVDYATLRAQHLG-ARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGG--KAGE  276 (629)
T ss_pred             ---cCcccCCcccHHHHHhcCCC-CCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCC--CCCC
Confidence               00001112234444333211 111122345789999999999999999999999987544322 2222222  2339


Q ss_pred             EEEechhHHHHHHHHHHHHhhccCCcEEEEcC----CCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCc
Q 013780          237 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG----KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISS  310 (436)
Q Consensus       237 ~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~----~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~  310 (436)
                      ++++..|+.|..+....++.++..|+++++.+    ..++..+++.++++++|+++++|++++.|.+....  ...++++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~  356 (629)
T PRK10524        277 TFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSS  356 (629)
T ss_pred             EEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhh
Confidence            99999999999888767899999999998875    34789999999999999999999999998876432  3456889


Q ss_pred             ceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCC--CCCccCcCccccccCCcEEEEEeCCCCccCC
Q 013780          311 LKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENP--LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP  388 (436)
Q Consensus       311 lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~--~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~  388 (436)
                      ||.+++||+++++++.+++.+.++ .++++ .||+||++..+.....  .....+++++|+|+++++++|+|+++|++++
T Consensus       357 lr~i~~~Ge~l~~~~~~~~~~~~~-~~v~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~  434 (629)
T PRK10524        357 LRALFLAGEPLDEPTASWISEALG-VPVID-NYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCG  434 (629)
T ss_pred             eeEEEEeCCCCCHHHHHHHHHhcC-CCeEe-ccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCC
Confidence            999999999999999999999997 89999 9999999854332222  1113457899999999999999965899999


Q ss_pred             CCCceEEEEecC---CcccCccccCChhhhhhhc-cccccCCeeecCCCCC
Q 013780          389 PNQLGEIWVRGP---NVTPGIVYINFFVFTLFLW-GCEHTDSFIRGKDQQT  435 (436)
Q Consensus       389 ~g~~Gel~v~g~---~~~~g~~Y~~~~~~~~~~~-~~~~~~~~~~tgD~~~  435 (436)
                      .|+.|||+++||   .++.|  ||++++.+.+.+ ..+ .++||+|||+|+
T Consensus       435 ~g~~Gel~i~gp~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~TGDl~~  482 (629)
T PRK10524        435 PNEKGVLVIEGPLPPGCMQT--VWGDDDRFVKTYWSLF-GRQVYSTFDWGI  482 (629)
T ss_pred             CCCcEEEEEcCCCChhhcCC--ccCChHHHHHhhhccC-CCcEEEcCCcEE
Confidence            999999999998   57889  999998776644 112 467999999873

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-50  Score=403.09  Aligned_cols=390  Identities=20%  Similarity=0.290  Sum_probs=306.8

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.+.|.++++++|+++|+++.+.+..+||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|+++
T Consensus        16 ~~l~~~l~~~a~~~p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~   95 (534)
T PRK05852         16 PRIADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVV   95 (534)
T ss_pred             ccHHHHHHHHHHhCCCCcEEEecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcEE
Confidence            77999999999999999999986555789999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC---CcEEeccCCccccccccccCcccchhhHHhhhcCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (436)
                      ++++|.++.+++.++++.++++++|++............   ...+......       .................. ..
T Consensus        96 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~  167 (534)
T PRK05852         96 VPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDS-------GPSGGTLSVHLDAATEPT-PA  167 (534)
T ss_pred             eecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccc-------cccccccccccccccCCC-cc
Confidence            999999999999999999999999988643321111100   0111110000       000000000000000000 00


Q ss_pred             CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcE
Q 013780          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (436)
Q Consensus       184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  263 (436)
                      ........++.++++|||||||.||+|.++|+++..++........+..  +|++++..|++|.+++...++.++..|++
T Consensus       168 ~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~p~~~~~g~~~~~~~~l~~g~~  245 (534)
T PRK05852        168 TSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSP--RDATVAVMPLYHGHGLIAALLATLASGGA  245 (534)
T ss_pred             ccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCC--cceEEEecCcchhHHHHHHHHHHHhcCCe
Confidence            1111223467899999999999999999999999988777665554433  39999999999999998789999999999


Q ss_pred             EEEcC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccC--ccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeee
Q 013780          264 VVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR--KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF  339 (436)
Q Consensus       264 v~~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~--~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~  339 (436)
                      ++++.  .+++..+++.++++++|+++++|+++..|.+.....  ...++++|.+.++|+++++++++.+.+.|+ .+++
T Consensus       246 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~-~~v~  324 (534)
T PRK05852        246 VLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFA-APVV  324 (534)
T ss_pred             EEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhC-CChh
Confidence            99864  578999999999999999999999999998865432  345789999999999999999999999997 9999


Q ss_pred             eccccccccCCcccccCCCC---CccCcCccccc--cCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhh
Q 013780          340 QVGYGMTETCAPISLENPLV---GVRRSGSAGTL--VAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVF  414 (436)
Q Consensus       340 ~~~YG~tE~~~~~~~~~~~~---~~~~~~~~G~p--~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~  414 (436)
                      + .||+||++..++......   ......++|.+  .++++++|+|+ +++++++|+.|||+++|+.++.|  ||++++.
T Consensus       325 ~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~-~g~~~~~g~~Gel~v~g~~v~~g--Y~~~~~~  400 (534)
T PRK05852        325 C-AFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGS-DGLPLPAGAVGEVWLRGTTVVRG--YLGDPTI  400 (534)
T ss_pred             h-ccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECC-CCCCCCCCCceEEEEecCcccch--hcCCccc
Confidence            9 999999987665433210   01112234444  69999999995 78999999999999999999999  9999999


Q ss_pred             hhhhccccccCCeeecCCCCC
Q 013780          415 TLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       415 ~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +.+.|    .++||+|||+|+
T Consensus       401 t~~~~----~~g~~~TGD~~~  417 (534)
T PRK05852        401 TAANF----TDGWLRTGDLGS  417 (534)
T ss_pred             chhhh----cCCCcccCceEE
Confidence            99888    477999999763

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-50  Score=406.20  Aligned_cols=385  Identities=18%  Similarity=0.271  Sum_probs=299.1

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.+.|.+.++++|+++|+++.+.+..+||+||.+++.++|+.|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus        14 ~~~~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~   93 (540)
T PRK05857         14 STVLDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIA   93 (540)
T ss_pred             cchHHHHHHHHhhCCCcEEEeecCCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEE
Confidence            57999999999999999999876545789999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC---CCcEEeccCCccccccccccCcccchhhHHhhhcCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (436)
                      +|+++.++.+++.++++.++++++|+++..........   ....++..+..        ....  .+.+.....   ..
T Consensus        94 v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~---~~  160 (540)
T PRK05857         94 VMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIA--------AVTR--ESEHSLDAA---SL  160 (540)
T ss_pred             EecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecc--------cccc--ccccccccc---cc
Confidence            99999999999999999999999999876532211111   01111111100        0000  000000000   00


Q ss_pred             CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhh-hh-ccCCCCcEEEechhHHHHHHHHHHHHhhccCC
Q 013780          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-QE-LVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (436)
Q Consensus       184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  261 (436)
                      .......++++++++|||||||.||+|.++|.++.++....... .. ......+++++.+|++|..+++ ..+.+++.|
T Consensus       161 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l~~G  239 (540)
T PRK05857        161 AGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCLMHG  239 (540)
T ss_pred             ccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH-HHHHHhhcc
Confidence            11223467899999999999999999999999998765432211 00 1112238899999999999986 677889999


Q ss_pred             cEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeec
Q 013780          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV  341 (436)
Q Consensus       262 ~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~  341 (436)
                      +++++. +.++..+++.++++++|+++++|+++..|.+.......+++++|.+++||++++....+ +.+.++ +++++ 
T Consensus       240 ~~~v~~-~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~g-~~i~~-  315 (540)
T PRK05857        240 GLCVTG-GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEATG-VRTAQ-  315 (540)
T ss_pred             eeEEec-CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHhC-Ceeec-
Confidence            988764 56889999999999999999999999999887766667889999999999999988775 555666 99999 


Q ss_pred             cccccccCCcccccCCCCC---ccCcCccccccCCcEEEEEeCCCCccC-----CCCCceEEEEecCCcccCccccCChh
Q 013780          342 GYGMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPL-----PPNQLGEIWVRGPNVTPGIVYINFFV  413 (436)
Q Consensus       342 ~YG~tE~~~~~~~~~~~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~-----~~g~~Gel~v~g~~~~~g~~Y~~~~~  413 (436)
                      .||+||++......+....   ..+++++|+|++|++++|+|++...++     +.|+.|||+++|+.++.|  ||++++
T Consensus       316 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~G--Y~~~~~  393 (540)
T PRK05857        316 VYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLG--YWNNPE  393 (540)
T ss_pred             ccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhh--hhCCcc
Confidence            9999999864443322211   235689999999999999996433333     457899999999999999  999999


Q ss_pred             hhhhhccccccCCeeecCCCCC
Q 013780          414 FTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       414 ~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .+.+.|    .+|||+|||+|+
T Consensus       394 ~t~~~~----~~g~~~TGDlg~  411 (540)
T PRK05857        394 RTAEVL----IDGWVNTGDLLE  411 (540)
T ss_pred             chhhhc----CCCceeccceEE
Confidence            998887    478999999874

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=9.2e-50  Score=399.47  Aligned_cols=382  Identities=24%  Similarity=0.355  Sum_probs=314.1

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      +.|+.+.|.+.++.+|+++|+++.  ++.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus        20 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~   97 (542)
T PRK06155         20 ERTLPAMLARQAERYPDRPLLVFG--GTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI   97 (542)
T ss_pred             ccCHHHHHHHHHHHCCCCeEEEeC--CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCE
Confidence            378999999999999999999987  689999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC-----CcEEeccCCccccccccccCcccchhhHHhhhcCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (436)
                      ++|+++.++.+++..+++.+++++++++......+.....     +.++....... .    .....+.. ..+....  
T Consensus        98 ~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~-~~~~~~~--  169 (542)
T PRK06155         98 AVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPAS-V----SVPAGWST-APLPPLD--  169 (542)
T ss_pred             EEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccc-c----ccccccch-hhhcccC--
Confidence            9999999999999999999999999999877666544321     12222111100 0    00000000 0011000  


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  260 (436)
                       .........++++++|+|||||||.||+|+++|.++............+.  ..+++++.+|++|..++. .++.++..
T Consensus       170 -~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~--~~~~~l~~~pl~~~~~~~-~~~~~l~~  245 (542)
T PRK06155        170 -APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIG--ADDVLYTTLPLFHTNALN-AFFQALLA  245 (542)
T ss_pred             -CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCC--CCCEEEEecCHHHHHHHH-HHHHHHHc
Confidence             11112334678999999999999999999999999987765544444443  339999999999999986 67899999


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (436)
Q Consensus       261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~  340 (436)
                      |+++++.+++++..+++.|+++++|+++++|+++..|.+.........+++|.++.||  +++++.+.+++.++ +++++
T Consensus       246 G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~-~~v~~  322 (542)
T PRK06155        246 GATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERFG-VDLLD  322 (542)
T ss_pred             CceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHcC-CCEEe
Confidence            9999999999999999999999999999999999999888766666778899888666  57899999999997 89999


Q ss_pred             ccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecC---CcccCccccCChhhhhh
Q 013780          341 VGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP---NVTPGIVYINFFVFTLF  417 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~---~~~~g~~Y~~~~~~~~~  417 (436)
                       .||+||++.++.....   ..+++++|.|.++++++|+|+ ++++++.|+.|||+++|+   .++.|  |+++++.+.+
T Consensus       323 -~YG~tE~~~~~~~~~~---~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gei~v~~~~~~~~~~G--Y~~~~~~~~~  395 (542)
T PRK06155        323 -GYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVDE-HDQELPDGEPGELLLRADEPFAFATG--YFGMPEKTVE  395 (542)
T ss_pred             -eecccccCccccCCCC---CCCCCCcCccCCCceEEEECC-CCCCCCCCCceEEEEecCCccccchh--hcCCHHHHHH
Confidence             9999999877654322   456789999999999999995 799999999999999998   69999  9999999988


Q ss_pred             hccccccCCeeecCCCCC
Q 013780          418 LWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       418 ~~~~~~~~~~~~tgD~~~  435 (436)
                      .|    .++||+|||+|+
T Consensus       396 ~~----~~~~~~TGD~~~  409 (542)
T PRK06155        396 AW----RNLWFHTGDRVV  409 (542)
T ss_pred             hh----cCCcEeccceEE
Confidence            87    478999999764

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=8.4e-50  Score=398.47  Aligned_cols=390  Identities=24%  Similarity=0.333  Sum_probs=316.9

Q ss_pred             chHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEe
Q 013780           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (436)
Q Consensus        28 ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v  107 (436)
                      ++.+.|.+.++++|+++|+.+.  ++.+||+||.+++.++|+.|.+.|+.+|++|+++++|+++++++++||+++|++++
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v   78 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH--DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFV   78 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEE
Confidence            3678899999999999999987  68999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC-----CcEEeccCCccccccccccCcccchhhHHhhhcCCCC
Q 013780          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (436)
Q Consensus       108 ~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (436)
                      |+++..+.+++..+++.+++++++++....+.+.....     ..++...+...    ..........++++.....   
T Consensus        79 ~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---  151 (515)
T TIGR03098        79 PINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAH----ASEGGGESPSWPKLLALGD---  151 (515)
T ss_pred             eCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCccc----ccCCccccccHHHhhcccc---
Confidence            99999999999999999999999998876654433221     11222111100    0001112234554443322   


Q ss_pred             CCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCc
Q 013780          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (436)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  262 (436)
                      .........+++++++|||||||.||+|.+||+++..++........+..  .+++++.+|++|.+++. .++.++..|+
T Consensus       152 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~-~~~~~l~~G~  228 (515)
T TIGR03098       152 ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRP--DDRLLAVLPLSFDYGFN-QLTTAFYVGA  228 (515)
T ss_pred             ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCc--ccEEEEECchhhHhHHH-HHHHHHHcCC
Confidence            11223345678999999999999999999999999988776655544433  39999999999999986 7889999999


Q ss_pred             EEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG  342 (436)
Q Consensus       263 ~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~  342 (436)
                      ++++.+.+++..+++.++++++|++.++|+++..|.+.... ...++++|.+++||+++++++.+.+++.+++..+++ .
T Consensus       229 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~-~  306 (515)
T TIGR03098       229 TVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFL-M  306 (515)
T ss_pred             EEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEee-e
Confidence            99999889999999999999999999999999999875332 236789999999999999999999999997789999 9


Q ss_pred             ccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc--
Q 013780          343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--  420 (436)
Q Consensus       343 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~--  420 (436)
                      ||+||++....... .....+++++|+|+++++++|+| +++++++.|+.|||+++|+.++.|  ||++++.+...+.  
T Consensus       307 YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~g--y~~~~~~~~~~~~~~  382 (515)
T TIGR03098       307 YGLTEAFRSTYLPP-EEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMG--YWNDPEKTAERFRPL  382 (515)
T ss_pred             eccccccceEeccc-ccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhcc--ccCCchhhhhhhhcc
Confidence            99999876544432 22245678999999999999999 489999999999999999999999  9999998877651  


Q ss_pred             ------ccccCCeeecCCCCC
Q 013780          421 ------CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ------~~~~~~~~~tgD~~~  435 (436)
                            +-..++|++|||+|+
T Consensus       383 ~~~~~~~~~~~~~~~TGD~~~  403 (515)
T TIGR03098       383 PPRPGELHLPELAVWSGDTVR  403 (515)
T ss_pred             CCccccccccccceeccceEE
Confidence                  111235899999863

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.1e-50  Score=411.65  Aligned_cols=383  Identities=22%  Similarity=0.323  Sum_probs=293.7

Q ss_pred             CCCchHHHHhhhcccCCCceEEEeCCC-----C--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHH
Q 013780           25 PSFSMVHFLFRNSASYSSKLALIDADS-----D--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL   97 (436)
Q Consensus        25 ~~~ti~~~l~~~~~~~p~~~a~~~~~~-----~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~l   97 (436)
                      +.+|+.+++.++++++|+++|+++.+.     +  ..+||+||.++++++|+.|.+. +++||+|+++++|+++++++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~l  110 (612)
T PRK12476         32 PGTTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFF  110 (612)
T ss_pred             ccCcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHH
Confidence            348999999999999999999986421     2  4899999999999999999886 8999999999999999999999


Q ss_pred             HHHHhCCeEeec-CCCCC--HHHHHHHHHhcCCcEEEEccchHHHHhhcC-------CCcEEeccCCccccccccccCcc
Q 013780           98 GVIAIGAIASTA-NPVYT--VSELSKQVKDSNPKLVITVPELWDKVKDLN-------LPAVLLGSKDKVSSSGLISRSSK  167 (436)
Q Consensus        98 A~~~~G~~~v~l-~~~~~--~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  167 (436)
                      ||+++|++++|+ ++.++  .+++.++++.++++++|+++...+.+....       ...++. .+.             
T Consensus       111 A~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~-------------  176 (612)
T PRK12476        111 AAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIA-IDA-------------  176 (612)
T ss_pred             HHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEE-ecc-------------
Confidence            999999999999 57766  789999999999999999887665443221       011111 110             


Q ss_pred             cchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHH
Q 013780          168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV  247 (436)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  247 (436)
                            +.....  .........++++++|+|||||||.||||+++|+++..++......... ...++++++.+|++|.
T Consensus       177 ------~~~~~~--~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~~~l~~~Pl~h~  247 (612)
T PRK12476        177 ------IPDSAG--ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDL-LDRNTHGVSWLPLYHD  247 (612)
T ss_pred             ------cccccc--ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhcc-CCCCceEEEeCCcccc
Confidence                  000000  1111223456899999999999999999999999998776654444331 1233899999999999


Q ss_pred             HHHHHHHHhhccCCcEEEEcC-CC--CHHHHHHHHH--HhcceEEEecHHHHHHHHhccc----cCccCCCcceEEEecC
Q 013780          248 FGLSVILYDQLQKGNCVVSMG-KF--DIEMALRAIE--KYRVTVWWVVPPIILALAKNSL----VRKFDISSLKLVGSGA  318 (436)
Q Consensus       248 ~g~~~~~~~~l~~G~~v~~~~-~~--~~~~~~~~l~--~~~~t~l~~~p~~~~~l~~~~~----~~~~~l~~lr~i~~gg  318 (436)
                      +|+...++.++..|.++++.+ .+  ++..+++.++  +++++.+.++|+++..+.....    ....+++++| +++||
T Consensus       248 ~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg  326 (612)
T PRK12476        248 MGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGS  326 (612)
T ss_pred             cchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecc
Confidence            999744445555444444443 23  8899999995  5899999999998887766421    1344688999 99999


Q ss_pred             CCCcHHHHHHHHhhCC-----CCeeeeccccccccCCcccccCCCCC-------------------------ccCcCccc
Q 013780          319 APLGKELMEDCQKNIP-----GATIFQVGYGMTETCAPISLENPLVG-------------------------VRRSGSAG  368 (436)
Q Consensus       319 ~~l~~~~~~~~~~~~~-----~~~i~~~~YG~tE~~~~~~~~~~~~~-------------------------~~~~~~~G  368 (436)
                      +++++++.++|++.|+     ...+++ .||+||++..++...+...                         ..+.+++|
T Consensus       327 ~~~~~~~~~~~~~~~~~~g~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G  405 (612)
T PRK12476        327 EPVSIDAVTTFNKAFAPYGLPRTAFKP-SYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCG  405 (612)
T ss_pred             cCCCHHHHHHHHHHHHhcCCCcccccc-ccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCC
Confidence            9999999999999873     234788 9999998765543322100                         01235889


Q ss_pred             cccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccc-----c----------ccCCeeecCCC
Q 013780          369 TLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC-----E----------HTDSFIRGKDQ  433 (436)
Q Consensus       369 ~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~-----~----------~~~~~~~tgD~  433 (436)
                      +|+++++++|+|++++++++.|+.|||+++|++++.|  ||++|+.|.+.|.-     .          ..++||+|||+
T Consensus       406 ~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDl  483 (612)
T PRK12476        406 QVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRG--YWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDL  483 (612)
T ss_pred             CcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCccccc--ccCChHHHHHHHhhhhccccccccccccccCCCCeeecccc
Confidence            9999999999997559999999999999999999999  99999999988721     1          12369999999


Q ss_pred             CC
Q 013780          434 QT  435 (436)
Q Consensus       434 ~~  435 (436)
                      |.
T Consensus       484 g~  485 (612)
T PRK12476        484 GV  485 (612)
T ss_pred             ce
Confidence            85

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.2e-49  Score=400.49  Aligned_cols=402  Identities=25%  Similarity=0.377  Sum_probs=318.1

Q ss_pred             CCCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013780           22 PSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (436)
Q Consensus        22 ~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~  101 (436)
                      +.+...++.+.|.+.++++|+++|+++.  +..+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||++
T Consensus        18 ~~~~~~~i~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~   95 (557)
T PRK07059         18 DASQYPSLADLLEESFRQYADRPAFICM--GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLR   95 (557)
T ss_pred             CCCCCCCHHHHHHHHHHHcCCCceEEEc--CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            3344478999999999999999999987  68999999999999999999999999999999999999999999999999


Q ss_pred             hCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccCCccccc---------------ccc
Q 013780          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSS---------------GLI  162 (436)
Q Consensus       102 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------------~~~  162 (436)
                      +|++++|++|.++.+++.++++.++++++++++.....+....    .+.++..........               ...
T Consensus        96 ~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (557)
T PRK07059         96 AGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPA  175 (557)
T ss_pred             cCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999876654443321    112211110000000               000


Q ss_pred             ccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhc----cC-CCCcE
Q 013780          163 SRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL----VG-ELDHV  237 (436)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~----~~-~~~~~  237 (436)
                      ...++...+.+.+..... .........++++++|+|||||||.||+|+++|.++..++.........    .. .....
T Consensus       176 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  254 (557)
T PRK07059        176 WSLPGHVRFNDALAEGAR-QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLN  254 (557)
T ss_pred             cCCCCcccHHHHhhccCC-CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcE
Confidence            011222344444433221 2222344567899999999999999999999999998765433222111    11 11257


Q ss_pred             EEechhHHHHHHHHHHHHhhccCCcEEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEe
Q 013780          238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS  316 (436)
Q Consensus       238 ~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~  316 (436)
                      +++.+|++|.+++....+.++..|++.++.+ +.++..+++.++++++|.+.++|.++..+.+.......+++++|.++.
T Consensus       255 ~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~  334 (557)
T PRK07059        255 FVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANG  334 (557)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEe
Confidence            8889999999988767778888888766664 568999999999999999999999999999887666667889999999


Q ss_pred             cCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEE
Q 013780          317 GAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW  396 (436)
Q Consensus       317 gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~  396 (436)
                      ||+++++.+.++|.+.++ +++++ .||+||++.++...... ....++++|+|+++++++|+| +++++++.|+.|||+
T Consensus       335 gg~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Gel~  410 (557)
T PRK07059        335 GGMAVQRPVAERWLEMTG-CPITE-GYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEIC  410 (557)
T ss_pred             ccccCCHHHHHHHHHHhC-CCeee-ccccccccchhhcCCCC-CCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceEEE
Confidence            999999999999999987 99999 99999998776544322 234578999999999999999 578999999999999


Q ss_pred             EecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          397 VRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       397 v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ++|+.++.|  |+++++.+.+.+   ..+|||+|||+++
T Consensus       411 v~g~~~~~g--Y~~~~~~~~~~~---~~~g~~~TGDl~~  444 (557)
T PRK07059        411 IRGPQVMAG--YWNRPDETAKVM---TADGFFRTGDVGV  444 (557)
T ss_pred             EeCCccchh--hhcCHHHHhhhc---ccCCceecCcEEE
Confidence            999999999  999999988766   2578999999763

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.7e-50  Score=395.54  Aligned_cols=366  Identities=21%  Similarity=0.343  Sum_probs=300.5

Q ss_pred             hhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCC
Q 013780           34 FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY  113 (436)
Q Consensus        34 ~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~  113 (436)
                      ..+++.+|+++|+.+...+..+||.|+.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|+++.+
T Consensus         2 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~   81 (488)
T PRK09088          2 AFHARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL   81 (488)
T ss_pred             chhhhhCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccC
Confidence            35667899999998754478999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCCCCCCCC
Q 013780          114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTD  193 (436)
Q Consensus       114 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (436)
                      +.+++.+++++++++++|+++......      ..                   ...++++.................++
T Consensus        82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (488)
T PRK09088         82 SASELDALLQDAEPRLLLGDDAVAAGR------TD-------------------VEDLAAFIASADALEPADTPSIPPER  136 (488)
T ss_pred             CHHHHHHHHHhCCCCEEEEcchhhccc------cc-------------------ccchhhhhhhccccccccCCCCCCCC
Confidence            999999999999999999986543210      00                   00111111111100111122345678


Q ss_pred             eEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHH
Q 013780          194 AAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIE  273 (436)
Q Consensus       194 ~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~  273 (436)
                      +++++|||||||.||+|.++|+++...+..+.......  ..+++++.+|++|.+++...++.++..|+++++.+.+++.
T Consensus       137 ~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~--~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~  214 (488)
T PRK09088        137 VSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVD--AHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPK  214 (488)
T ss_pred             ceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCC--CCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHH
Confidence            99999999999999999999999988766554443332  3399999999999999987788999999999999888999


Q ss_pred             HHHHHHH--HhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCc
Q 013780          274 MALRAIE--KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAP  351 (436)
Q Consensus       274 ~~~~~l~--~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~  351 (436)
                      .++..+.  ++++|+++++|.++..+.+........+++||.+++||++++.+..+.+.+.  ++++++ .||+||++++
T Consensus       215 ~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~-~YG~TE~~~~  291 (488)
T PRK09088        215 RTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVD-GFGMSEAGTV  291 (488)
T ss_pred             HHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceee-eecccccccc
Confidence            9999886  4899999999999999988765555567899999999999999999888865  499999 9999999875


Q ss_pred             ccccC-CCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeec
Q 013780          352 ISLEN-PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRG  430 (436)
Q Consensus       352 ~~~~~-~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~t  430 (436)
                      ..... ......+++++|.|+|+++++|+| +++.+++.|+.|||+++|++++.|  |+++++.+.+.+   ..++||+|
T Consensus       292 ~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~g--Y~~~~~~~~~~~---~~~g~~~T  365 (488)
T PRK09088        292 FGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPG--YWRRPQATARAF---TGDGWFRT  365 (488)
T ss_pred             cccCCCcccccccCCccccCCCCcEEEEEC-CCCCCCcCCCceEEEEECCccchh--hcCChhhhhhhh---cCCCCeee
Confidence            43321 111134668999999999999999 478999999999999999999999  999999988766   25789999


Q ss_pred             CCCCC
Q 013780          431 KDQQT  435 (436)
Q Consensus       431 gD~~~  435 (436)
                      ||+|+
T Consensus       366 GDl~~  370 (488)
T PRK09088        366 GDIAR  370 (488)
T ss_pred             cceEE
Confidence            99874

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-49  Score=398.23  Aligned_cols=399  Identities=24%  Similarity=0.335  Sum_probs=313.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.+.|.++++.+|+++|+.+.  ++.+||.||.+++.++|+.|.++|+++|++|+++++|+++++++++||+++|+++
T Consensus        33 ~~l~~~l~~~a~~~p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~  110 (567)
T PRK06178         33 RPLTEYLRAWARERPQRPAIIFY--GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVH  110 (567)
T ss_pred             ccHHHHHHHHHHHCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHHHHHhCeEE
Confidence            78999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEecc-CCccccc---cccccC--c--ccchhhHH
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGS-KDKVSSS---GLISRS--S--KIVSFHDL  174 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~---~~~~~~--~--~~~~~~~~  174 (436)
                      +|++|..+.+++.++++.++++++++++...+.+....    .+.+++.. .+.....   ......  .  ....+.++
T Consensus       111 v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (567)
T PRK06178        111 VPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDL  190 (567)
T ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccccccccccH
Confidence            99999999999999999999999999988776655432    12222111 1000000   000000  0  00111122


Q ss_pred             hhhcCC-CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHH
Q 013780          175 IELSGS-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI  253 (436)
Q Consensus       175 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~  253 (436)
                      ...... ..........++++++++|||||||.||+|++||.++..+........ ......+++++.+|++|++|+...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~~~~~g~~~~  269 (567)
T PRK06178        191 LPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA-VVGGEDSVFLSFLPEFWIAGENFG  269 (567)
T ss_pred             HHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh-ccCCCCcEEEEecchHHHHHHHHH
Confidence            221110 011122335678999999999999999999999999987654433222 222334899999999999999777


Q ss_pred             HHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEec--CCCCcHHHHHHHHh
Q 013780          254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSG--AAPLGKELMEDCQK  331 (436)
Q Consensus       254 ~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~g--g~~l~~~~~~~~~~  331 (436)
                      ++.++..|+++++.+++++..++..++++++|++.++|..+..+.+.......++++++.+..+  ++++++++.++|++
T Consensus       270 ~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  349 (567)
T PRK06178        270 LLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRA  349 (567)
T ss_pred             HHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHH
Confidence            8889999999999999999999999999999999999999999887765555667888886544  58999999999999


Q ss_pred             hCCCCeeeeccccccccCCcccccCCCC-----CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCc
Q 013780          332 NIPGATIFQVGYGMTETCAPISLENPLV-----GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGI  406 (436)
Q Consensus       332 ~~~~~~i~~~~YG~tE~~~~~~~~~~~~-----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~  406 (436)
                      .++ ..++.+.||+||+++.+.......     ...+++++|+|+||++++|+|++++++++.|++|||+++|++++.| 
T Consensus       350 ~~g-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~g-  427 (567)
T PRK06178        350 LTG-SVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKG-  427 (567)
T ss_pred             HhC-CcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCccccc-
Confidence            998 555543799999876544332110     0235678999999999999998789999999999999999999999 


Q ss_pred             cccCChhhhhhhccccccCCeeecCCCCC
Q 013780          407 VYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       407 ~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                       ||++++.+...+    .+|||+|||+++
T Consensus       428 -Y~~~~~~~~~~~----~dg~~~TGDl~~  451 (567)
T PRK06178        428 -YWNKPEATAEAL----RDGWLHTGDIGK  451 (567)
T ss_pred             -ccCChhhhhhcc----cCCceeecceEE
Confidence             999999998877    467999999763

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-49  Score=398.05  Aligned_cols=385  Identities=23%  Similarity=0.327  Sum_probs=310.3

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      +|+.++|.+.++++|+++|+++.  +..+||.||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         7 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~   84 (528)
T PRK07470          7 MNLAHFLRQAARRFPDRIALVWG--DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVW   84 (528)
T ss_pred             CCHHHHHHHHHHHCCCceEEEEC--CccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEE
Confidence            88999999999999999999986  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccCCccccccccccCcccchhhHHhhhcCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT  182 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (436)
                      +++++.++.+++.++++.++++.+++++...+.+....    ....++..+.          ......+.++...... .
T Consensus        85 v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~  153 (528)
T PRK07470         85 VPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGG----------ARAGLDYEALVARHLG-A  153 (528)
T ss_pred             EecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCC----------CcccccHHHHHhcCCC-C
Confidence            99999999999999999999999999987655443321    1111111110          0012244444433211 1


Q ss_pred             CCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCc
Q 013780          183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (436)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  262 (436)
                      ........++++++|+|||||||.||+|.++|+++...+..............++++..+|++|.+++. .++ .+..|+
T Consensus       154 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~-~~~~g~  231 (528)
T PRK07470        154 RVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIH-QLC-QVARGA  231 (528)
T ss_pred             CCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHH-HHH-HHhcCc
Confidence            122334567899999999999999999999999987654332222211112238999999999999985 444 456666


Q ss_pred             EEEEcC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780          263 CVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (436)
Q Consensus       263 ~v~~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~  340 (436)
                      +.++.+  .+++..+++.++++++|++.++|+++..+.+.......+++++|.+++||++++++..+++.+.++ ..+++
T Consensus       232 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~~  310 (528)
T PRK07470        232 ATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLG-KVLVQ  310 (528)
T ss_pred             eEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhC-cHHHH
Confidence            665553  578999999999999999999999999999887666667899999999999999999999999987 88999


Q ss_pred             ccccccccCCcccccCCCC------CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhh
Q 013780          341 VGYGMTETCAPISLENPLV------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVF  414 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~------~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~  414 (436)
                       .||+||+++.+.......      .....+++|+|+++++++++|+ ++++++.|+.|||+++|+.++.|  |+++++.
T Consensus       311 -~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~g--y~~~~~~  386 (528)
T PRK07470        311 -YFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDD-EGRELPPGETGEICVIGPAVFAG--YYNNPEA  386 (528)
T ss_pred             -hCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECC-CCCCCCCCCceEEEEeCCccchh--hcCCHHH
Confidence             999999987665432210      1235678999999999999995 88999999999999999999999  9999999


Q ss_pred             hhhhccccccCCeeecCCCCC
Q 013780          415 TLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       415 ~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +...|    .++||+|||+++
T Consensus       387 ~~~~~----~~~~~~TGDl~~  403 (528)
T PRK07470        387 NAKAF----RDGWFRTGDLGH  403 (528)
T ss_pred             HHhhh----cCCcEecceeEE
Confidence            98877    478999999863

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=2e-49  Score=395.74  Aligned_cols=388  Identities=24%  Similarity=0.303  Sum_probs=314.0

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCC---CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADS---DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~---~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G  103 (436)
                      .|+.++|.+.++++|+++|+++.+.   .+.+||.||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|
T Consensus         7 ~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G   86 (517)
T PRK08008          7 QHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG   86 (517)
T ss_pred             ccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            6799999999999999999987642   2789999999999999999999999999999999999999999999999999


Q ss_pred             CeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC------CCcEEeccCCccccccccccCcccchhhHHhhh
Q 013780          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL  177 (436)
Q Consensus       104 ~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (436)
                      +++++++|..+.+++.++++.++++.+++++.....+.+..      .+.+.+.....       ........+.+....
T Consensus        87 ~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  159 (517)
T PRK08008         87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVAL-------PADDGVSSFTQLKAQ  159 (517)
T ss_pred             eEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCC-------cccccccCHHHHhcc
Confidence            99999999999999999999999999999987766554431      12222221110       111233444444333


Q ss_pred             cCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhh
Q 013780          178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ  257 (436)
Q Consensus       178 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~  257 (436)
                      ... .........++++++++|||||||.||+|++||.++............+  ...+++++.+|++|..+....++.+
T Consensus       160 ~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~  236 (517)
T PRK08008        160 QPA-TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCAL--RDDDVYLTVMPAFHIDCQCTAAMAA  236 (517)
T ss_pred             CCc-cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCC--CCCCeEEEecCcHHHHHHHHHHHHH
Confidence            221 1112233456899999999999999999999999998654322111112  2338999999999998887788999


Q ss_pred             ccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCe
Q 013780          258 LQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT  337 (436)
Q Consensus       258 l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~  337 (436)
                      +..|+++++.+++++..+++.++++++|++.++|.+++.+...........+++|.+.+++ +++++....|.+.++ .+
T Consensus       237 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~  314 (517)
T PRK08008        237 FSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERFG-VR  314 (517)
T ss_pred             HhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHhC-Ce
Confidence            9999999999999999999999999999999999999998876554444456788887764 789999999999987 99


Q ss_pred             eeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEec---CCcccCccccCChhh
Q 013780          338 IFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG---PNVTPGIVYINFFVF  414 (436)
Q Consensus       338 i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g---~~~~~g~~Y~~~~~~  414 (436)
                      +++ .||+||+++.+....... .....++|.|+++++++|+| +++++++.|+.|||+++|   ++++.|  ||++++.
T Consensus       315 ~~~-~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~g--y~~~~~~  389 (517)
T PRK08008        315 LLT-SYGMTETIVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKE--YYLDPKA  389 (517)
T ss_pred             EEe-eccccccccccccCCccc-cccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhh--HhCChHH
Confidence            999 999999986555443322 45567899999999999999 589999999999999998   589999  9999999


Q ss_pred             hhhhccccccCCeeecCCCC
Q 013780          415 TLFLWGCEHTDSFIRGKDQQ  434 (436)
Q Consensus       415 ~~~~~~~~~~~~~~~tgD~~  434 (436)
                      +.+.|   ..++|++|||+|
T Consensus       390 ~~~~~---~~~g~~~TGDl~  406 (517)
T PRK08008        390 TAKVL---EADGWLHTGDTG  406 (517)
T ss_pred             Hhhcc---cCCCCeeccceE
Confidence            98877   357899999975

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1e-50  Score=371.91  Aligned_cols=420  Identities=22%  Similarity=0.305  Sum_probs=333.7

Q ss_pred             CCcceeecCC---CCCcCCCCCCCchHHHHhhhcccCCCceEEEeCC----------CC-----------ccccHHHHHH
Q 013780            7 GRDGIYRSLR---PPLVLPSDPSFSMVHFLFRNSASYSSKLALIDAD----------SD-----------ESLSFSQFKS   62 (436)
Q Consensus         7 ~~~~~~~~~~---~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~   62 (436)
                      .++..+|..+   +....+..+-.|+.+++.+..+++.++.++-+.+          +|           .++||.|+..
T Consensus        18 ~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~   97 (678)
T KOG1180|consen   18 HETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYE   97 (678)
T ss_pred             CCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHH
Confidence            4555666553   2333344445899999999999999999983220          11           5799999999


Q ss_pred             HHHHHHHHHHhcCCCCCCE-EEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHh
Q 013780           63 IVIKVSHSFRHLGITKKDV-VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (436)
Q Consensus        63 ~~~~la~~L~~~gv~~gd~-V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (436)
                      ++..+|+.|.+.|++++++ |+|+++.+.+|+++++||++.+..+|.+-..+..+.+.+-|+.++++.+||+...+..+.
T Consensus        98 ~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~  177 (678)
T KOG1180|consen   98 RVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLK  177 (678)
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHH
Confidence            9999999999999997776 999999999999999999999999999999999999999999999999999998887665


Q ss_pred             hcC-----CCcEEeccC-Ccccc--c--cccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCccee
Q 013780          142 DLN-----LPAVLLGSK-DKVSS--S--GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI  211 (436)
Q Consensus       142 ~~~-----~~~~~~~~~-~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~  211 (436)
                      ...     .+.++.... +....  +  ....++..+.+|+++.+.+.... .++....++|+|+|+|||||||.||||+
T Consensus       178 ~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~-~~~~~P~p~Dia~IMYTSGSTG~PKGVm  256 (678)
T KOG1180|consen  178 APLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE-IPPHPPKPSDIACIMYTSGSTGLPKGVM  256 (678)
T ss_pred             HHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC-CCCCCCCCCceEEEEEcCCCCCCCceEE
Confidence            442     333443331 11111  1  11234567889999999887533 3344448899999999999999999999


Q ss_pred             hhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHH--------HHHHHHHHhc
Q 013780          212 LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIE--------MALRAIEKYR  283 (436)
Q Consensus       212 ~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~--------~~~~~l~~~~  283 (436)
                      ++|+|+++........... -.+.|+++.++|+.|++.+. +=+.+++.|+.+-..++.+-.        .---.+..++
T Consensus       257 l~H~NiVA~~~G~~~~v~~-lg~~D~yi~yLPLAHIlEl~-aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lk  334 (678)
T KOG1180|consen  257 LTHSNIVAGVTGVGENVPE-LGPKDRYIAYLPLAHILELT-AELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELK  334 (678)
T ss_pred             EecccHHhhhhhhcccCcc-cCCCceEEEechHHHHHHHH-HHHHHHhhCCEeecCCcceecccchhhccCCcCcccccc
Confidence            9999999998887666642 23349999999999999996 778999999999877543211        1123467789


Q ss_pred             ceEEEecHHHHHHHHhcc--------------------------c--c--------------CccCCCcceEEEecCCCC
Q 013780          284 VTVWWVVPPIILALAKNS--------------------------L--V--------------RKFDISSLKLVGSGAAPL  321 (436)
Q Consensus       284 ~t~l~~~p~~~~~l~~~~--------------------------~--~--------------~~~~l~~lr~i~~gg~~l  321 (436)
                      ||.+.++|.++.++.+.-                          .  .              +..---.||.+++||+|+
T Consensus       335 PTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapL  414 (678)
T KOG1180|consen  335 PTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPL  414 (678)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCC
Confidence            999999999988775430                          0  0              000114899999999999


Q ss_pred             cHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCC--ceEEEEec
Q 013780          322 GKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ--LGEIWVRG  399 (436)
Q Consensus       322 ~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~--~Gel~v~g  399 (436)
                      +++..+.+..-+. +++.+ +||.||+++..+...+.  +...+.+|.|++.++++++|.+++--.+.+.  .|||+|+|
T Consensus       415 S~dtQrF~nic~C-~Pv~q-GYGLTEtca~~tv~e~~--d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G  490 (678)
T KOG1180|consen  415 SPDTQRFMNICFC-CPVLQ-GYGLTETCAAATVLEPE--DFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGG  490 (678)
T ss_pred             CHHHHHHHHHhcc-ccccc-cccccchhcccEecChh--hcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecC
Confidence            9999999999886 89999 99999999988887776  6778899999999999999987776655554  79999999


Q ss_pred             CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          400 PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       400 ~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +++..|  ||++|+.|++.|...+...||+|||.|+
T Consensus       491 ~~vt~g--Y~kn~ekT~e~ft~~~G~~WF~TGDIGe  524 (678)
T KOG1180|consen  491 PNVTMG--YYKNEEKTKEDFTVEDGQRWFRTGDIGE  524 (678)
T ss_pred             CccChh--hhCChhhhhhhceecCCcEEEeccccce
Confidence            999999  9999999999996533334999999986

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.6e-50  Score=471.54  Aligned_cols=377  Identities=21%  Similarity=0.266  Sum_probs=318.4

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.++|.++++++|+++|+++.  +..+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+++
T Consensus      3095 ~~~~~l~~~~a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aGa~~ 3172 (3956)
T PRK12467       3095 RLVHQLIEAQVARTPEAPALVFG--DQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAY 3172 (3956)
T ss_pred             ccHHHHHHHHHHhCCCcceEeeC--CcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhCcEe
Confidence            68999999999999999999997  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|++|.++.+++.+++++++++++|++....+.+........+. .+                   ....... ....+.
T Consensus      3173 vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~-~~~~~~ 3231 (3956)
T PRK12467       3173 VPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALT-LD-------------------RLDLNGY-SENNPS 3231 (3956)
T ss_pred             ecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceee-ec-------------------chhhccc-CCCCCc
Confidence            99999999999999999999999999987655443221111111 11                   0000000 012223


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++|+|||||||.||||+++|+++.+.+........+...  ++++...|++|..+.. .++.+|..|+++++
T Consensus      3232 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~--d~~l~~~~~~fd~~~~-~~~~~L~~G~~l~i 3308 (3956)
T PRK12467       3232 TRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDAN--DRVLLFMSFSFDGAQE-RFLWTLICGGCLVV 3308 (3956)
T ss_pred             ccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcC--CEEEEecCccHhHHHH-HHHHHHhCCCEEEE
Confidence            44578899999999999999999999999999988877666655443  9999999999998875 88999999999999


Q ss_pred             cCC--CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccc
Q 013780          267 MGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYG  344 (436)
Q Consensus       267 ~~~--~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG  344 (436)
                      .+.  +++..+++.|.++++|++.++|++++.|.+...  ..++++||.+++||+++++++.++|++.+++.++++ .||
T Consensus      3309 ~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n-~YG 3385 (3956)
T PRK12467       3309 RDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTN-GYG 3385 (3956)
T ss_pred             CCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEe-Ccc
Confidence            975  689999999999999999999999999987542  336789999999999999999999999998799999 999


Q ss_pred             ccccCCcccccCCCCC---ccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhc--
Q 013780          345 MTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW--  419 (436)
Q Consensus       345 ~tE~~~~~~~~~~~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~--  419 (436)
                      +||++..++.......   .....++|+|++|++++|+| ++++++|.|++|||+|+|+.++.|  |+++|+.|.++|  
T Consensus      3386 ~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~G--Y~~~~~~T~~~F~~ 3462 (3956)
T PRK12467       3386 PTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARG--YHQRPSLTAERFVA 3462 (3956)
T ss_pred             cchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhh--ccCCcccchhhccC
Confidence            9999876654332211   12346899999999999999 589999999999999999999999  999999999998  


Q ss_pred             -cc-cccCCeeecCCCCC
Q 013780          420 -GC-EHTDSFIRGKDQQT  435 (436)
Q Consensus       420 -~~-~~~~~~~~tgD~~~  435 (436)
                       .| ...++||+|||+|+
T Consensus      3463 ~p~~~~g~r~yrTGDl~~ 3480 (3956)
T PRK12467       3463 DPFSGSGGRLYRTGDLAR 3480 (3956)
T ss_pred             CCCCCCCceeeccchhhe
Confidence             22 23457999999985

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=5.6e-50  Score=398.45  Aligned_cols=377  Identities=20%  Similarity=0.265  Sum_probs=310.1

Q ss_pred             chHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEe
Q 013780           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (436)
Q Consensus        28 ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v  107 (436)
                      ++.+.|.+.++.+|+++|+.+.  +..+||+||.+++.++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v   78 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYI   78 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            5789999999999999999887  78999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCC
Q 013780          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV  187 (436)
Q Consensus       108 ~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (436)
                      ++++.++.+++.++++..+++.++++..........  ..+.+  +                ..........  ......
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~--~~~~~--~----------------~~~~~~~~~~--~~~~~~  136 (502)
T TIGR01734        79 PVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGT--QIITL--S----------------ALEQAETSGG--PVSFDH  136 (502)
T ss_pred             CCCCcChHHHHHHHHHhcCCCEEEecccccccccCC--ceEEc--h----------------HhhhhhhhcC--Cccccc
Confidence            999999999999999999999999987653322111  11110  0                1111111111  111122


Q ss_pred             CCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEc
Q 013780          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM  267 (436)
Q Consensus       188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~  267 (436)
                      ...+++.++++|||||||.||+|.++|+++..+...........  .++++++..|++|..++. .++.++..|+++++.
T Consensus       137 ~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~  213 (502)
T TIGR01734       137 AVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLS--EGKQFLNQAPFSFDLSVM-DLYPCLASGGTLHCL  213 (502)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCC--CCceEEeecCceechhHH-HHHHHHHCCCEEEEc
Confidence            34578899999999999999999999999998877655554333  338999999999999885 788999999999988


Q ss_pred             CC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccc
Q 013780          268 GK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYG  344 (436)
Q Consensus       268 ~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG  344 (436)
                      ++   .++..+++.+.+++++.+.++|+++..+..........+++++.++++|+++++++.+++.+.++++.+++ .||
T Consensus       214 ~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-~yG  292 (502)
T TIGR01734       214 DKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYN-TYG  292 (502)
T ss_pred             CHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEe-Ccc
Confidence            64   58899999999999999999999998877665545567889999999999999999999999998899999 999


Q ss_pred             ccccCCcccccCCCC---CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccc
Q 013780          345 MTETCAPISLENPLV---GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC  421 (436)
Q Consensus       345 ~tE~~~~~~~~~~~~---~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~  421 (436)
                      +||+++.++......   ......++|.|.++++++|+|+ ++..+++|+.|||+++|+.++.|  |+++++.+.+.|-.
T Consensus       293 ~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~g~~~~~g--y~~~~~~~~~~~~~  369 (502)
T TIGR01734       293 PTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDE-EGEPLPEGEKGEIVIVGPSVSKG--YLNNPEKTAEAFFS  369 (502)
T ss_pred             CCcceEEEEEEEccccccccCCccccccccCCCEEEEECC-CCCCCCCCCeeEEEEcccccccc--ccCCcccchHhhee
Confidence            999876444322111   1334568999999999999995 78999999999999999999999  99999998887632


Q ss_pred             cccCCeeecCCCCC
Q 013780          422 EHTDSFIRGKDQQT  435 (436)
Q Consensus       422 ~~~~~~~~tgD~~~  435 (436)
                      ....+||+|||+|+
T Consensus       370 ~~~~~~~~TGDlg~  383 (502)
T TIGR01734       370 HEGQPAYRTGDAGT  383 (502)
T ss_pred             CCCcEEEECCCEEE
Confidence            23446999999874

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-49  Score=396.24  Aligned_cols=382  Identities=24%  Similarity=0.316  Sum_probs=314.1

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.++|.++++++|+++|+++.  +..+||.||.+++.++++.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~   89 (524)
T PRK06188         12 ATYGHLLVSALKRYPDRPALVLG--DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR   89 (524)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccc-hHHHHhhcC---CC-cEEeccCCccccccccccCcccchhhHHhhhcCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPE-LWDKVKDLN---LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~-~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (436)
                      ++++|..+.+++..+++.++++.+++++. .........   .. ..++....          ......+.+......  
T Consensus        90 v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--  157 (524)
T PRK06188         90 TALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGP----------VPDGVDLLAAAAKFG--  157 (524)
T ss_pred             EecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCC----------ccchhhHHHhhhccC--
Confidence            99999999999999999999999999876 333322211   10 11111110          000011111111111  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCC
Q 013780          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG  261 (436)
Q Consensus       182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  261 (436)
                      .........++++++++|||||||.||+|.++|.++..++........+...  +++++.+|++|..++.  ++.++..|
T Consensus       158 ~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~--~~~l~~~pl~~~~g~~--~~~~l~~G  233 (524)
T PRK06188        158 PAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPAD--PRFLMCTPLSHAGGAF--FLPTLLRG  233 (524)
T ss_pred             cccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcC--cEEEEecCchhhhhHH--HHHHHHcC
Confidence            1111122345669999999999999999999999999987766665555433  9999999999998874  57889999


Q ss_pred             cEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeec
Q 013780          262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV  341 (436)
Q Consensus       262 ~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~  341 (436)
                      +++++.+.+++..+++.++++++|+++++|+++..+++.......+++++|.+++||++++++..+.+.+.++ ..+++ 
T Consensus       234 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~-  311 (524)
T PRK06188        234 GTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFG-PIFAQ-  311 (524)
T ss_pred             CEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhC-chhhh-
Confidence            9999999999999999999999999999999999999887766678899999999999999999999999987 77889 


Q ss_pred             cccccccCCcccccCCCC----CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhh
Q 013780          342 GYGMTETCAPISLENPLV----GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLF  417 (436)
Q Consensus       342 ~YG~tE~~~~~~~~~~~~----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~  417 (436)
                      .||+||++..+.......    ...+..++|+|+++++++|+|+ ++++++.|+.|||+++|+.++.|  |+++++.+..
T Consensus       312 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~-~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~  388 (524)
T PRK06188        312 YYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDE-DGREVAQGEVGEICVRGPLVMDG--YWNRPEETAE  388 (524)
T ss_pred             eeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcC-CCCCCCCCCeeEEEEECcchhhh--hcCChHHhhh
Confidence            999999976655443321    1345678999999999999995 79999999999999999999999  9999999988


Q ss_pred             hccccccCCeeecCCCCC
Q 013780          418 LWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       418 ~~~~~~~~~~~~tgD~~~  435 (436)
                      .+    .++||+|||+++
T Consensus       389 ~~----~~g~~~TGDl~~  402 (524)
T PRK06188        389 AF----RDGWLHTGDVAR  402 (524)
T ss_pred             hh----cCCceeecceEE
Confidence            87    578999999763

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-49  Score=399.25  Aligned_cols=395  Identities=30%  Similarity=0.461  Sum_probs=310.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      +++.++|.+.++++|+++|+++.  ++.+||+||..++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        24 ~~~~~~~~~~a~~~p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~  101 (563)
T PRK06710         24 QPLHKYVEQMASRYPEKKALHFL--GKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIV  101 (563)
T ss_pred             ccHHHHHHHHHHHCCCceEEEec--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEE
Confidence            57999999999999999999986  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccCCcccccccc-------c----------cC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLI-------S----------RS  165 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------~----------~~  165 (436)
                      +|++|..+.+++..+++.++++++++++.....+....    ...+++.........+..       .          ..
T Consensus       102 vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (563)
T PRK06710        102 VQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSES  181 (563)
T ss_pred             eccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhccccccccccccc
Confidence            99999999999999999999999999876544332221    111111100000000000       0          00


Q ss_pred             cccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHH
Q 013780          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF  245 (436)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~  245 (436)
                      .....+..+.....  ..........+++++++|||||||.||+|.++|+++..++.............++++++.+|++
T Consensus       182 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~  259 (563)
T PRK06710        182 ETIHLWNSVEKEVN--TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFF  259 (563)
T ss_pred             chhhhhhhhhhccc--cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchH
Confidence            00001111111100  1111112235789999999999999999999999997654322221111112237889999999


Q ss_pred             HHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHH
Q 013780          246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL  325 (436)
Q Consensus       246 ~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~  325 (436)
                      |.+++...++.++..|+++++.+++++..+++.|+++++|++.++|+++..+.+........++++|.+++||+++++++
T Consensus       260 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~  339 (563)
T PRK06710        260 HVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEV  339 (563)
T ss_pred             HHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHH
Confidence            99998766778899999999998899999999999999999999999999998876555567789999999999999999


Q ss_pred             HHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccC
Q 013780          326 MEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG  405 (436)
Q Consensus       326 ~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g  405 (436)
                      .+++++.++ .++++ .||+||++......... ....++++|+|++++.++++|++++.+++.|+.|||+++|+.++.|
T Consensus       340 ~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~g  416 (563)
T PRK06710        340 QEKFETVTG-GKLVE-GYGLTESSPVTHSNFLW-EKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKG  416 (563)
T ss_pred             HHHHHHhhC-CCEec-ccccccCccccccCccc-ccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchh
Confidence            999999886 89999 99999998755433221 1345678999999999999998889999999999999999999999


Q ss_pred             ccccCChhhhhhhccccccCCeeecCCCC
Q 013780          406 IVYINFFVFTLFLWGCEHTDSFIRGKDQQ  434 (436)
Q Consensus       406 ~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~  434 (436)
                        |+++++.+...+    .++||+|||++
T Consensus       417 --Y~~~~~~~~~~~----~~g~~~TGD~~  439 (563)
T PRK06710        417 --YWNKPEETAAVL----QDGWLHTGDVG  439 (563)
T ss_pred             --hhCChHHHhhhc----ccCcccccceE
Confidence              999999998877    47899999976

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=2.4e-49  Score=396.23  Aligned_cols=379  Identities=22%  Similarity=0.279  Sum_probs=308.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.++|.++++  |+++|+++.  ++.+||.||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus        25 ~~~~~~~~~~a~--p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~  100 (536)
T PRK10946         25 LPLTDILTRHAA--SDAIAVICG--ERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAP  100 (536)
T ss_pred             ccHHHHHHHhhC--CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEE
Confidence            679999988887  999999987  7899999999999999999999999999999999999999999999999999998


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccch--------HHHHhhcC--CCcEEeccCCccccccccccCcccchhhHHhh
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPEL--------WDKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      +++.+.....++..+++.++++++++++..        .+.+....  ...+++. .           ..+...+.+...
T Consensus       101 v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~  168 (536)
T PRK10946        101 VNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLL-N-----------DDGEHSLDDAIN  168 (536)
T ss_pred             ecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEe-c-----------CCCCccHHHHhh
Confidence            877777778889999999999999998642        22232221  1111111 1           011223344443


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH-HHH
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~  255 (436)
                      ...  .........++++++++|||||||.||+|++||+++..++........+..  ++++++.+|++|.+++.. .++
T Consensus       169 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~--~~~~l~~~p~~h~~~~~~~~~~  244 (536)
T PRK10946        169 HPA--EDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTP--QTRYLCALPAAHNYPMSSPGAL  244 (536)
T ss_pred             Ccc--cccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCC--CceEEEecCccccccchhhhHH
Confidence            322  222233446789999999999999999999999999998877655555533  399999999999988753 468


Q ss_pred             hhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhc--cccCccCCCcceEEEecCCCCcHHHHHHHHhhC
Q 013780          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN--SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (436)
Q Consensus       256 ~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~--~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~  333 (436)
                      .++..|+++++.+++++..+++.++++++|++.++|.++..+++.  .......++++|.+++||+++++++.+++.+.+
T Consensus       245 ~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~  324 (536)
T PRK10946        245 GVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL  324 (536)
T ss_pred             HHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc
Confidence            889999999999888999999999999999999999999999876  222334678999999999999999999999999


Q ss_pred             CCCeeeeccccccccCCcccccCCCCCccCcCcccccc-CCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCCh
Q 013780          334 PGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFF  412 (436)
Q Consensus       334 ~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~  412 (436)
                      + +++++ .||+||++..... ..........++|+|+ |+++++|+| +++++++.|+.|||+++|+.++.|  ||+++
T Consensus       325 g-~~~~~-~YG~tE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~G--Y~~~~  398 (536)
T PRK10946        325 G-CQLQQ-VFGMAEGLVNYTR-LDDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRG--YYKSP  398 (536)
T ss_pred             C-CeEEE-eecccccceeeec-CCCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchh--hcCCc
Confidence            7 99999 9999996543322 1221134568899999 899999999 589999999999999999999999  99999


Q ss_pred             hhhhhhccccccCCeeecCCCC
Q 013780          413 VFTLFLWGCEHTDSFIRGKDQQ  434 (436)
Q Consensus       413 ~~~~~~~~~~~~~~~~~tgD~~  434 (436)
                      +.+.+.|   ..++||+|||+|
T Consensus       399 ~~t~~~~---~~d~~~~TGDl~  417 (536)
T PRK10946        399 QHNASAF---DANGFYCSGDLV  417 (536)
T ss_pred             ccchhhc---ccCCceecCceE
Confidence            9988776   357899999987

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=4.2e-49  Score=392.49  Aligned_cols=378  Identities=25%  Similarity=0.368  Sum_probs=309.5

Q ss_pred             HHHHhhh-cccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEee
Q 013780           30 VHFLFRN-SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST  108 (436)
Q Consensus        30 ~~~l~~~-~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~  108 (436)
                      .++|.++ ++.+|+++|+++.  +..+||.||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|++++|
T Consensus         7 ~~~~~~~~~~~~p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~v~   84 (508)
T TIGR02262         7 EDLLDRNVVEGRGGKTAFIDD--ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVA   84 (508)
T ss_pred             HHHHHHHHhcccCCceEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEee
Confidence            3445555 5779999999986  789999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchhhHHhhhcCCCCC
Q 013780          109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (436)
Q Consensus       109 l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (436)
                      +++..+.+++.++++.++++++++++.....+.+..     .+.++....          .......+.++.....  ..
T Consensus        85 l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--~~  152 (508)
T TIGR02262        85 LNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGR----------PEAGEVQLAELLATES--EQ  152 (508)
T ss_pred             ccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCC----------CCcccccHHHHhhcCC--Cc
Confidence            999999999999999999999999987766554321     111221111          0111223344333222  22


Q ss_pred             CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhH-HhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCc
Q 013780          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI-SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (436)
Q Consensus       184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  262 (436)
                      ..+....++++++++|||||||.||+|.++|+++...+... .....+  ..+++++...|++|.+++...++.++..|+
T Consensus       153 ~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~  230 (508)
T TIGR02262       153 FKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGI--REDDVVFSAAKLFFAYGLGNALTFPMSVGA  230 (508)
T ss_pred             cCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCC--CCCCEEEEcCchHHHHHHHHHHHHHHHcCc
Confidence            23344567899999999999999999999999998776542 222223  233899999999999999767888899999


Q ss_pred             EEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeec
Q 013780          263 CVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV  341 (436)
Q Consensus       263 ~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~  341 (436)
                      ++++.+ .+++..+++.|+++++|+++++|.++..+.+.........+++|.+++||+++++++.+.|++.++ +++++ 
T Consensus       231 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~v~~-  308 (508)
T TIGR02262       231 TTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFG-VDIVD-  308 (508)
T ss_pred             eEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhC-Cchhh-
Confidence            998875 468999999999999999999999998887765444445679999999999999999999999997 89999 


Q ss_pred             cccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccc
Q 013780          342 GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC  421 (436)
Q Consensus       342 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~  421 (436)
                      .||+||++++.......  ....+++|+|+++++++|+| +++.++++|++|||+++|+.++.|  |+++++.+...|  
T Consensus       309 ~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~g--Y~~~~~~~~~~~--  381 (508)
T TIGR02262       309 GIGSTEMLHIFLSNLPG--DVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATM--YWNNRAKTRDTF--  381 (508)
T ss_pred             CccccccCceeecCCcc--CCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccc--cCCCHHHhHhhh--
Confidence            99999998765544332  34567899999999999999 689999999999999999999999  999999999887  


Q ss_pred             cccCCeeecCCCC
Q 013780          422 EHTDSFIRGKDQQ  434 (436)
Q Consensus       422 ~~~~~~~~tgD~~  434 (436)
                        .++|++|||++
T Consensus       382 --~~~~~~TGD~~  392 (508)
T TIGR02262       382 --QGEWTRSGDKY  392 (508)
T ss_pred             --hcCceeccceE
Confidence              57899999976

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.4e-49  Score=403.91  Aligned_cols=401  Identities=20%  Similarity=0.230  Sum_probs=303.5

Q ss_pred             CcCCCCCCCchHHHHhhhcccCCCceEEEeCCC-C--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHH
Q 013780           19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDADS-D--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC   95 (436)
Q Consensus        19 ~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~-~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~   95 (436)
                      .|+++ +..|+.+.+.++  .+|+++|+++.+. +  +.+||+||.+++.++|+.|++.|+++||+|+|+++|+++++++
T Consensus        79 ~wf~~-~~~n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~  155 (655)
T PRK03584         79 RWFPG-ARLNYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVA  155 (655)
T ss_pred             eeCCC-CEeeHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence            45554 347888888764  6899999987532 2  6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchH---------HHHhh----cC-CCcEEeccCCccccccc
Q 013780           96 FLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVKD----LN-LPAVLLGSKDKVSSSGL  161 (436)
Q Consensus        96 ~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~----~~-~~~~~~~~~~~~~~~~~  161 (436)
                      +|||+++|++++++++.++.+++.++++.++++++|+++...         +.+..    .. .+.+++......  ...
T Consensus       156 ~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~  233 (655)
T PRK03584        156 MLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGP--AAA  233 (655)
T ss_pred             HHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCC--ccc
Confidence            999999999999999999999999999999999999986532         11111    11 112222111000  000


Q ss_pred             cccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhh-hhhHHhhhhccCCCCcEEEe
Q 013780          162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMISAHQELVGELDHVVLC  240 (436)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~  240 (436)
                      .........++++...... ..........+++++|+|||||||.||||+++|++++.+ .........+  ..+|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~~  310 (655)
T PRK03584        234 AAALPGALLWEDFLAPAEA-AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDL--GPGDRFFW  310 (655)
T ss_pred             ccccCCcccHHHHhhcccc-CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCC--CCCCEEEE
Confidence            0111223456665542211 122233456789999999999999999999999987644 3322233333  23399999


Q ss_pred             chhHHHHHHHHHHHHhhccCCcEEEEcC----CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCccCCCcceEE
Q 013780          241 VLPMFHVFGLSVILYDQLQKGNCVVSMG----KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLV  314 (436)
Q Consensus       241 ~~p~~~~~g~~~~~~~~l~~G~~v~~~~----~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~lr~i  314 (436)
                      ..++.|+.+.  .++.+|..|+++++.+    .+++..+++.++++++|++.++|+++..+.+...  ....++++||.+
T Consensus       311 ~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i  388 (655)
T PRK03584        311 YTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTI  388 (655)
T ss_pred             cCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEE
Confidence            9999887543  4678999999999874    2479999999999999999999999999877532  234578999999


Q ss_pred             EecCCCCcHHHHHHHHhhCC-CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCce
Q 013780          315 GSGAAPLGKELMEDCQKNIP-GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG  393 (436)
Q Consensus       315 ~~gg~~l~~~~~~~~~~~~~-~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~G  393 (436)
                      ++||+++++++.+++.+.++ ++.+.+ .||+||+++......+.. ..+++++|.|.+|++++|+|+ +|+++ .|+.|
T Consensus       389 ~~~Ge~l~~~~~~~~~~~~~~~~~~~~-~yG~TE~~~~~~~~~~~~-~~~~g~~g~p~~g~~~~ivd~-~g~~~-~g~~G  464 (655)
T PRK03584        389 GSTGSPLPPEGFDWVYEHVKADVWLAS-ISGGTDICSCFVGGNPLL-PVYRGEIQCRGLGMAVEAWDE-DGRPV-VGEVG  464 (655)
T ss_pred             EEecCCCCHHHHHHHHHHhCCCceEEe-ccChHhhhcccccCCCCC-CcCCCccCCCcCCceeEEECC-CCCCC-CCCce
Confidence            99999999999999999984 588899 999999865444332221 456789999999999999994 78888 79999


Q ss_pred             EEEEecC--CcccCccccCChhhhhhhcccccc-CCeeecCCCCC
Q 013780          394 EIWVRGP--NVTPGIVYINFFVFTLFLWGCEHT-DSFIRGKDQQT  435 (436)
Q Consensus       394 el~v~g~--~~~~g~~Y~~~~~~~~~~~~~~~~-~~~~~tgD~~~  435 (436)
                      ||+++|+  +++.|  ||++++.++....++.. ++||+|||+|+
T Consensus       465 eL~v~gp~p~~~~g--y~~~~~~~~~~~~~~~~~~g~~~TGDl~~  507 (655)
T PRK03584        465 ELVCTKPFPSMPLG--FWNDPDGSRYRDAYFDTFPGVWRHGDWIE  507 (655)
T ss_pred             EEEEccCCCCCcce--eeCCCccchHHHhhhccCCCEeecCCeEE
Confidence            9999996  78999  99999865432233322 56889999874

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.8e-49  Score=398.63  Aligned_cols=391  Identities=21%  Similarity=0.299  Sum_probs=298.2

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      +.|+.++|.+.++.+|+++|+++.  +..+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus        13 ~~~~~~~l~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~   90 (579)
T PLN03102         13 PLTPITFLKRASECYPNRTSIIYG--KTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAV   90 (579)
T ss_pred             cccHHHHHHHHHHhCCCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcE
Confidence            367999999999999999999987  689999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC---------CcEEeccCCccccccccccCcccchhhHHhh
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL---------PAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      ++|++|.++.+++.++++.++++++|+++...+.+.....         ...++..+......   .......++.++..
T Consensus        91 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  167 (579)
T PLN03102         91 LNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK---RPSSEELDYECLIQ  167 (579)
T ss_pred             EeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc---CCcccccCHHHHHh
Confidence            9999999999999999999999999998876654443210         11111111100000   00111234444443


Q ss_pred             hcCCCCCCC---CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHH
Q 013780          177 LSGSVTDIP---DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI  253 (436)
Q Consensus       177 ~~~~~~~~~---~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~  253 (436)
                      .........   .....++++++|+|||||||.||+|+++|.++............+  ...+++++.+|++|..++. .
T Consensus       168 ~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~--~~~~~~l~~~pl~h~~g~~-~  244 (579)
T PLN03102        168 RGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEM--GTCPVYLWTLPMFHCNGWT-F  244 (579)
T ss_pred             ccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCC--CCCCeEEecCChhhhcchh-H
Confidence            322111100   112356899999999999999999999999976544332222222  2237889999999999986 5


Q ss_pred             HHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhC
Q 013780          254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI  333 (436)
Q Consensus       254 ~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~  333 (436)
                      .+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.+++++ +
T Consensus       245 ~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~  323 (579)
T PLN03102        245 TWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L  323 (579)
T ss_pred             HHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c
Confidence            667888899998888889999999999999999999999999998875444444567888999999999999999876 5


Q ss_pred             CCCeeeeccccccccCCcccccCCCC------C------ccCcCccccccCCcEEEEEeCCCCccCCC--CCceEEEEec
Q 013780          334 PGATIFQVGYGMTETCAPISLENPLV------G------VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRG  399 (436)
Q Consensus       334 ~~~~i~~~~YG~tE~~~~~~~~~~~~------~------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~--g~~Gel~v~g  399 (436)
                      + .++++ .||+||+++.++......      .      ....+..+.+++  .++++|.+++++++.  ++.|||+++|
T Consensus       324 g-~~i~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g  399 (579)
T PLN03102        324 G-FQVMH-AYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKG  399 (579)
T ss_pred             C-CeEEe-ecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEEC
Confidence            5 89999 999999986544321110      0      012233344444  456667667777775  3689999999


Q ss_pred             CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          400 PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       400 ~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +.++.|  ||++|+.+.+.|    .+|||+|||+|+
T Consensus       400 ~~~~~G--Y~~~~~~t~~~f----~~gw~~TGDlg~  429 (579)
T PLN03102        400 SSIMKG--YLKNPKATSEAF----KHGWLNTGDVGV  429 (579)
T ss_pred             cchhhh--hcCChhhhHhhh----ccCceecCceEE
Confidence            999999  999999999988    578999999874

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=7.5e-49  Score=401.66  Aligned_cols=404  Identities=19%  Similarity=0.211  Sum_probs=302.4

Q ss_pred             CcCCCCCCCchHHHHh-hhcccCCCceEEEeCCCC------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCc
Q 013780           19 LVLPSDPSFSMVHFLF-RNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH   91 (436)
Q Consensus        19 ~~~~~~~~~ti~~~l~-~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~   91 (436)
                      .|+++. ..|+.+.+. +.++++|+++|+++.+.+      +.+||+||.+++.++|+.|+++|+++||+|+++++|+++
T Consensus       167 ~wf~g~-~ln~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e  245 (728)
T PLN03052        167 QWLPGA-VLNVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVH  245 (728)
T ss_pred             EECCCC-EeEHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence            455543 378877655 444678999999976432      479999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHH---------HHhhcC-CCcEEeccCCccccccc
Q 013780           92 FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDLN-LPAVLLGSKDKVSSSGL  161 (436)
Q Consensus        92 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~  161 (436)
                      +++++|||+++|++++|++|.++.+++.+++++++++++|+++....         .+.... ...+++.........  
T Consensus       246 ~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~--  323 (728)
T PLN03052        246 AVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRV--  323 (728)
T ss_pred             HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCcccc--
Confidence            99999999999999999999999999999999999999999875421         221111 122222111100000  


Q ss_pred             cccCcccchhhHHhhhcCCC---CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEE
Q 013780          162 ISRSSKIVSFHDLIELSGSV---TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV  238 (436)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~  238 (436)
                       ........|++++......   ..........+++++|+|||||||.||||+++|.+++...........+  ..+|++
T Consensus       324 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l--~~~d~~  400 (728)
T PLN03052        324 -KLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDI--RKGDIV  400 (728)
T ss_pred             -ccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCC--CCCcEE
Confidence             0011234566665432110   1112222356899999999999999999999999987665443333333  233999


Q ss_pred             EechhHHHHHHHHHHHHhhccCCcEEEEcCC-CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEec
Q 013780          239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSG  317 (436)
Q Consensus       239 ~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~-~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~g  317 (436)
                      ++..|+.|+++.+ .++.+|..|+++++.+. .++..+++.++++++|++.++|+++..|.+.......++++||.+++|
T Consensus       401 ~~~~~l~w~~g~~-~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~  479 (728)
T PLN03052        401 CWPTNLGWMMGPW-LVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST  479 (728)
T ss_pred             EECCCcHHHhHHH-HHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEec
Confidence            9999999999985 67899999999999863 456789999999999999999999999988765566788999999999


Q ss_pred             CCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCC--ceEE
Q 013780          318 AAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ--LGEI  395 (436)
Q Consensus       318 g~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~--~Gel  395 (436)
                      |++++++...++.+.++..++++ .||+||+++.+....+.. ..+++++|.|.+|++++|+| ++|++++.|+  .|||
T Consensus       480 Ge~l~~~~~~~~~~~~~~~~i~~-~yG~TE~~~~~~~~~~~~-~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL  556 (728)
T PLN03052        480 GEASSVDDYLWLMSRAGYKPIIE-YCGGTELGGGFVTGSLLQ-PQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGEL  556 (728)
T ss_pred             CCCCCHHHHHHHHHhcCCCCeEe-eccChhhCcccccCCCCC-CCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEE
Confidence            99999999999888876567888 999999986544332221 34678899999999999999 5899999885  5999


Q ss_pred             EEecCC--cccCccccCChhhhhhhcc---ccccCCeeecCCCCC
Q 013780          396 WVRGPN--VTPGIVYINFFVFTLFLWG---CEHTDSFIRGKDQQT  435 (436)
Q Consensus       396 ~v~g~~--~~~g~~Y~~~~~~~~~~~~---~~~~~~~~~tgD~~~  435 (436)
                      +++++.  ...+  |++++. ....|.   .+....|++|||+++
T Consensus       557 ~v~~~~~~~~~~--~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~  598 (728)
T PLN03052        557 ALFPLMFGASST--LLNADH-YKVYFKGMPVFNGKILRRHGDIFE  598 (728)
T ss_pred             EEeCCCCCCCcc--ccCchh-hhhhhhcCCCCCCCEEEecCceEE
Confidence            998653  3346  676542 222221   011234899999864

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.5e-49  Score=409.81  Aligned_cols=383  Identities=22%  Similarity=0.307  Sum_probs=296.7

Q ss_pred             CCCchHHHHhhhcccCCC-ceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 013780           25 PSFSMVHFLFRNSASYSS-KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (436)
Q Consensus        25 ~~~ti~~~l~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G  103 (436)
                      +..|+.+.|.+.++++|+ ++|+.+. ..+.+||+||.++++++|+.|.+. +++||+|+|+++|++++++++|||+++|
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~G  279 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLRR  279 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHcC
Confidence            347899999999999998 6787653 247899999999999999999887 5999999999999999999999999999


Q ss_pred             CeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhh--cC---CC-cEEeccCCccccccccccCcccchhhHH--h
Q 013780          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD--LN---LP-AVLLGSKDKVSSSGLISRSSKIVSFHDL--I  175 (436)
Q Consensus       104 ~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~--~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  175 (436)
                      ++++|+++.++.+++.+++++++++++|++.+..+....  ..   .. ..+...+ .          .....+.+.  .
T Consensus       280 ~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~----------~~~~~~~~~~~~  348 (718)
T PRK08043        280 RIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLED-L----------KDDVTTADKLWI  348 (718)
T ss_pred             CcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhh-h----------hhhcchhHHHHH
Confidence            999999999999999999999999999998776543111  10   00 1111111 0          000001100  0


Q ss_pred             hhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHH
Q 013780          176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY  255 (436)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~  255 (436)
                      ...............++++++++|||||||.||+|++||+++..++........+..  +|++++.+|++|.+++...++
T Consensus       349 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~Pl~h~~g~~~~~~  426 (718)
T PRK08043        349 FAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTP--NDRFMSALPLFHSFGLTVGLF  426 (718)
T ss_pred             HHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCc--cCeEEEcCcchhhhhhHHHHH
Confidence            000000111112346789999999999999999999999999988766555444433  399999999999999977788


Q ss_pred             hhccCCcEEEEcCC-CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCC
Q 013780          256 DQLQKGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP  334 (436)
Q Consensus       256 ~~l~~G~~v~~~~~-~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~  334 (436)
                      .++..|+++++.+. +++..+++.++++++|+++++|+++..+.+..  ...++++||.+++||+++++++.+.|++.++
T Consensus       427 ~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g  504 (718)
T PRK08043        427 TPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKFG  504 (718)
T ss_pred             HHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHcC
Confidence            99999999998864 67788899999999999999999998876642  2346789999999999999999999999997


Q ss_pred             CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccC--Ch
Q 013780          335 GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN--FF  412 (436)
Q Consensus       335 ~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~--~~  412 (436)
                       +++++ .||+||++++++...+.  ..+++++|+|+|+++++|+|. ++.    ++.|||+++|++++.|  ||+  ++
T Consensus       505 -~~l~~-~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~~~i~d~-~~~----~~~Gel~v~g~~v~~G--Y~~~e~~  573 (718)
T PRK08043        505 -LRILE-GYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLSV-PGI----EQGGRLQLKGPNIMNG--YLRVEKP  573 (718)
T ss_pred             -CCeec-ccCcccccceEEecCCc--ccCCCCCCCcCCCCeeEEecC-CCC----CCceEEEEecCCcccc--ccCCCCc
Confidence             89999 99999998776654433  456789999999999999985 432    4669999999999999  998  44


Q ss_pred             hhhhhhc----cccccCCeeecCCCCC
Q 013780          413 VFTLFLW----GCEHTDSFIRGKDQQT  435 (436)
Q Consensus       413 ~~~~~~~----~~~~~~~~~~tgD~~~  435 (436)
                      +.+...+    ..+..+|||+|||+|+
T Consensus       574 ~~~~~~~~~~~~~~~~~gw~~TGDlg~  600 (718)
T PRK08043        574 GVLEVPTAENARGEMERGWYDTGDIVR  600 (718)
T ss_pred             ccccccccccccccccCCeEecCCEEE
Confidence            4221110    0112468999999874

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.9e-49  Score=393.88  Aligned_cols=391  Identities=21%  Similarity=0.281  Sum_probs=308.0

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      .+++.++|.+.++.+|+++|+++.  ++.+||.||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         9 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~   86 (540)
T PRK06164          9 ADTLASLLDAHARARPDAVALIDE--DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGAT   86 (540)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEecC--CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcE
Confidence            378999999999999999999965  689999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchH-----HHHhhcC------CCcEEeccCCccccccccccCcccchhhHH
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELW-----DKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDL  174 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (436)
                      ++|+++..+.+++.++++.++++++|+++...     +.+....      .+.++...+... ..    .......+...
T Consensus        87 ~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~  161 (540)
T PRK06164         87 VIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAAD-AT----PAPAPGARVQL  161 (540)
T ss_pred             EEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcc-cC----CCCCccccccc
Confidence            99999999999999999999999999986542     2222111      111211111000 00    00000000000


Q ss_pred             hhhcCCC--CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH
Q 013780          175 IELSGSV--TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (436)
Q Consensus       175 ~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~  252 (436)
                      .......  ..........+++++++|||||||.||+|+++|+++..+.......+.+.  .++++++.+|++|.+|+. 
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~l~~~p~~~~~g~~-  238 (540)
T PRK06164        162 FALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYD--PGAVLLAALPFCGVFGFS-  238 (540)
T ss_pred             ccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCC--CCCEEEEcCCchhHHHHH-
Confidence            1000000  00011233568899999999999999999999999998877766666554  339999999999999996 


Q ss_pred             HHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecC-CCCcHHHHHHHHh
Q 013780          253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA-APLGKELMEDCQK  331 (436)
Q Consensus       253 ~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg-~~l~~~~~~~~~~  331 (436)
                      .++.++..|+++++.+.+++..+++.|+++++|+++++|+++..|.+.. .....++++|.+.++| .+...++.+++.+
T Consensus       239 ~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  317 (540)
T PRK06164        239 TLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARA  317 (540)
T ss_pred             HHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhh
Confidence            7899999999999999999999999999999999999999999998873 3445788999887765 5666777777776


Q ss_pred             hCCCCeeeeccccccccCCcccccCCCCC-ccCcCcccccc-CCcEEEEEeCCCCccCCCCCceEEEEecCCcccCcccc
Q 013780          332 NIPGATIFQVGYGMTETCAPISLENPLVG-VRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYI  409 (436)
Q Consensus       332 ~~~~~~i~~~~YG~tE~~~~~~~~~~~~~-~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~  409 (436)
                      .  ++++++ .||+||++.+++....... ..+..+.|.|+ ++++++|+|++++.+++.|+.|||+++|++++.|  ||
T Consensus       318 ~--~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~g--Y~  392 (540)
T PRK06164        318 R--GVPLTG-LYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRG--YL  392 (540)
T ss_pred             c--CCceec-ceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEeccccccc--cc
Confidence            5  499999 9999999876655433211 23345678876 8999999998899999999999999999999999  99


Q ss_pred             CChhhhhhhccccccCCeeecCCCCC
Q 013780          410 NFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ++|+.+.+.|   ..++||+|||+|+
T Consensus       393 ~~~~~t~~~~---~~~~~~~TGDl~~  415 (540)
T PRK06164        393 DNPDATARAL---TDDGYFRTGDLGY  415 (540)
T ss_pred             CCchhhhhcc---cCCCceecCCeEE
Confidence            9999998877   3578999999864

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.3e-48  Score=391.62  Aligned_cols=395  Identities=30%  Similarity=0.463  Sum_probs=312.5

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      -|+.++|.+.++++|+++|+++.  ++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        21 ~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~   98 (541)
T TIGR03205        21 GTLPDLLSKAAADYGPRPALEFR--DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARV   98 (541)
T ss_pred             CCHHHHHHHHHHHcCCCceEEEC--CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEE
Confidence            47999999999999999999886  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccch--HHHHhhc----CCCcEEeccCCcccccc----ccccCcccchhhHHhh
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPEL--WDKVKDL----NLPAVLLGSKDKVSSSG----LISRSSKIVSFHDLIE  176 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  176 (436)
                      ++++|..+.+++.++++.++++++++++..  ...+...    ....+++..........    ..........+.+++.
T Consensus        99 v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (541)
T TIGR03205        99 VHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK  178 (541)
T ss_pred             EecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence            999999999999999999999999998631  1111111    11122222111000000    0001122344555554


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhc----cCCCCcEEEechhHHHHHHHHH
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL----VGELDHVVLCVLPMFHVFGLSV  252 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~g~~~  252 (436)
                      ...  .........++++++++|||||||.||+|+++|+++....... .....    .....+++++..|++|.+++..
T Consensus       179 ~~~--~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~  255 (541)
T TIGR03205       179 GAA--APAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLPLFHIYALTV  255 (541)
T ss_pred             cCC--CCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEeccHHHHHHHHH
Confidence            322  1222234567899999999999999999999999987643321 11111    1112278999999999999887


Q ss_pred             HHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhh
Q 013780          253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKN  332 (436)
Q Consensus       253 ~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~  332 (436)
                      .++.++..|+++++...+++..+++.|+++++|++.++|+++..|.+........++++|.+++||+++++++.+++.+.
T Consensus       256 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~  335 (541)
T TIGR03205       256 ILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERK  335 (541)
T ss_pred             HHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHHHHH
Confidence            78899999999999988899999999999999999999999999987654445567899999999999999999999998


Q ss_pred             CCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEe-CCCCccCCCCCceEEEEecCCcccCccccCC
Q 013780          333 IPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVS-VDTLKPLPPNQLGEIWVRGPNVTPGIVYINF  411 (436)
Q Consensus       333 ~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d-~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~  411 (436)
                      ++ .++++ .||+||++..++...... ...++++|.|+++++++|.+ .+++++++.|+.|||+++|+.++.|  |+++
T Consensus       336 ~~-~~~~~-~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~g--y~~~  410 (541)
T TIGR03205       336 TG-LKLKS-GWGMTETCSPGTGHPPEG-PDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRG--YWNR  410 (541)
T ss_pred             hC-CCeec-ccccccCCcccccCCCCC-CCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCcccc--ccCC
Confidence            86 99999 999999987666543321 34567899999999998864 2578899999999999999999999  9999


Q ss_pred             hhhhhhhccccccCCeeecCCCCC
Q 013780          412 FVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |+.+.+.|    .++||+|||+++
T Consensus       411 ~~~~~~~~----~~~~~~TGD~~~  430 (541)
T TIGR03205       411 PEESAEAF----VGDRFLTGDIGY  430 (541)
T ss_pred             hhhhHhhh----ccCCcccCceEE
Confidence            99998887    467889998753

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-48  Score=391.37  Aligned_cols=372  Identities=17%  Similarity=0.192  Sum_probs=296.4

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      .|+.++|.+++  .|+++|+++.  +..+||.||.++++++|+.|.+.|+ .+||+|+++++|+++++++++||+++|++
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~   78 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG--DRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYV   78 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCE
Confidence            56888888764  6999999986  6899999999999999999999999 79999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC-CcEEeccCCccccccccccCcccchhhHHhhhcCCCCCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI  184 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (436)
                      ++|++|.++.+++.++++.++++++|+++...+.+..... ...++..+.              ..+.+++....  ...
T Consensus        79 ~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~--------------~~~~~~~~~~~--~~~  142 (540)
T PRK13388         79 LVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDT--------------PAYAELVAAAG--ALT  142 (540)
T ss_pred             EEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccc--------------hhhhhhhcccc--CcC
Confidence            9999999999999999999999999999877665544321 111111110              11223322111  111


Q ss_pred             CCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEE
Q 013780          185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV  264 (436)
Q Consensus       185 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v  264 (436)
                      +.....++++++++|||||||.||+|.++|+++............+..  +|+++..+|++|..++...++.++..|+++
T Consensus       143 ~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~  220 (540)
T PRK13388        143 PHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTR--DDVCYVSMPLFHSNAVMAGWAPAVASGAAV  220 (540)
T ss_pred             CCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCC--CCEEEEeeCchhhcchHHHHHHHHHcCcEE
Confidence            122356789999999999999999999999999887766555554433  399999999999999876677789999999


Q ss_pred             EEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccc
Q 013780          265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYG  344 (436)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG  344 (436)
                      ++.+.+++..+++.++++++|++..+|..+..+.+..........+++.+ + |++++++..+.+.+.++ .++++ .||
T Consensus       221 v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~~-~~l~~-~YG  296 (540)
T PRK13388        221 ALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRFG-CQVED-GYG  296 (540)
T ss_pred             EECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHhC-Cceec-ccc
Confidence            99988999999999999999999999999999887654333334567744 3 56778888999999986 99999 999


Q ss_pred             ccccCCcccccCCCCCccCcCccccccCCcEEE-----------EEeCCCCccC-CCCCceEEEEe-cCCcccCccccCC
Q 013780          345 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQ-----------IVSVDTLKPL-PPNQLGEIWVR-GPNVTPGIVYINF  411 (436)
Q Consensus       345 ~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~-----------i~d~~~~~~~-~~g~~Gel~v~-g~~~~~g~~Y~~~  411 (436)
                      +||++.++....    ....+++|+|++++++.           ++| ++|+.+ +.++.|||+++ |+.++.|  |+++
T Consensus       297 ~tE~~~~~~~~~----~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~g--Y~~~  369 (540)
T PRK13388        297 SSEGAVIVVREP----GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEG--YYNN  369 (540)
T ss_pred             cccccceeecCC----CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCccccc--ccCC
Confidence            999987655321    24568999999997652           344 345554 34678999998 9999999  9999


Q ss_pred             hhhhhhhccccccCCeeecCCCCC
Q 013780          412 FVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |+.+.+.|    .+|||+|||+|+
T Consensus       370 ~~~t~~~~----~~g~~~TGD~~~  389 (540)
T PRK13388        370 PEATAERM----RHGMYWSGDLAY  389 (540)
T ss_pred             hHHHHHHh----hcCceeccceEE
Confidence            99999887    467999999764

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.1e-49  Score=397.58  Aligned_cols=372  Identities=16%  Similarity=0.223  Sum_probs=284.7

Q ss_pred             Cc-hHHHHhhhcccCCCceEEEeCCCC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 013780           27 FS-MVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (436)
Q Consensus        27 ~t-i~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G  103 (436)
                      || +.+.|.+.++++|+++|+++.+++  +++||+||.++++++|+.|.++  ++||+|+|+++|++++++++|||+++|
T Consensus         1 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G   78 (525)
T PRK05851          1 MNELAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAG   78 (525)
T ss_pred             CchHHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcC
Confidence            45 888999999999999999988544  7899999999999999999987  799999999999999999999999999


Q ss_pred             CeEeecCCC-------CCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhh
Q 013780          104 AIASTANPV-------YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus       104 ~~~v~l~~~-------~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      +++++++..       ...+++.++++.++++++|+++.....+...... +.+  .                .+.....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~--~----------------~~~~~~~  139 (525)
T PRK05851         79 AAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-VTV--H----------------DLATAAH  139 (525)
T ss_pred             CCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-ccc--c----------------ccccccc
Confidence            986544311       1234556778999999999988765554432111 000  0                0000000


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHh
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~  256 (436)
                      ..   .........++++++|+|||||||.||+|+++|+++..++........+. ..+|++++.+|++|.+++. .++.
T Consensus       140 ~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h~~g~~-~~~~  214 (525)
T PRK05851        140 TN---RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLD-AATDVGCSWLPLYHDMGLA-FLLT  214 (525)
T ss_pred             cc---ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCC-CCCCeEEEcCCCccCccHH-HHHH
Confidence            00   00011123578999999999999999999999999998887766555543 1339999999999999996 6789


Q ss_pred             hccCCcEEEEcCC--C--CHHHHHHHHHHhcceEEEecHHHHHHHHhccc-cCccCCCcceEEEecCCCCcHHHHHHHHh
Q 013780          257 QLQKGNCVVSMGK--F--DIEMALRAIEKYRVTVWWVVPPIILALAKNSL-VRKFDISSLKLVGSGAAPLGKELMEDCQK  331 (436)
Q Consensus       257 ~l~~G~~v~~~~~--~--~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~-~~~~~l~~lr~i~~gg~~l~~~~~~~~~~  331 (436)
                      ++..|+++++.+.  +  ++..+++.++++++|++..+|.++..+.+... ....++++||.+++||+++++++.++|.+
T Consensus       215 ~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~  294 (525)
T PRK05851        215 AALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFAT  294 (525)
T ss_pred             HHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHH
Confidence            9999999999862  4  57889999999999988665555555544322 23446789999999999999999999987


Q ss_pred             h---CC--CCeeeeccccccccCCcccccCCCC-------------CccCcCccccccCCcEEEEEeCCCCccCCCCCce
Q 013780          332 N---IP--GATIFQVGYGMTETCAPISLENPLV-------------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG  393 (436)
Q Consensus       332 ~---~~--~~~i~~~~YG~tE~~~~~~~~~~~~-------------~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~G  393 (436)
                      .   ++  ...+++ .||+||++..++...+..             ...+.+++|+|+++++++|+|++.+.+++.|+.|
T Consensus       295 ~~~~~g~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~G  373 (525)
T PRK05851        295 AMAPFGFDAGAAAP-SYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIG  373 (525)
T ss_pred             HHhhcCCChhhccc-ccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeE
Confidence            5   33  235888 999999976655432210             0124568999999999999997555678999999


Q ss_pred             EEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          394 EIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       394 el~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ||+++|++++.|  ||++|+.+        .++||+|||+|+
T Consensus       374 El~v~g~~~~~G--Y~~~~~~~--------~~~~~~TGDl~~  405 (525)
T PRK05851        374 EIEIRGASMMSG--YLGQAPID--------PDDWFPTGDLGY  405 (525)
T ss_pred             EEEEecCchhhc--cccCCccC--------CCCceeccceEE
Confidence            999999999999  99988642        367999999864

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=3.7e-49  Score=433.15  Aligned_cols=376  Identities=20%  Similarity=0.280  Sum_probs=312.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.++|.++++++|+++|+++.  +..+||+||.++++++|+.|.+.|+++|++|+|+++++++++++++||+++|+++
T Consensus       458 ~~l~~~~~~~~~~~p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~G~~~  535 (1296)
T PRK10252        458 TTLSALVAQQAAKTPDAPALADA--RYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAW  535 (1296)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|++|.++.+++.++++.+++++++++......+..... .....                   +.......   .....
T Consensus       536 vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~-------------------~~~~~~~~---~~~~~  592 (1296)
T PRK10252        536 LPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPD-LTSLC-------------------YNAPLAPQ---GAAPL  592 (1296)
T ss_pred             EecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCC-ceeee-------------------cccccccc---cCCCC
Confidence            999999999999999999999999999876554433210 00100                   10000000   11111


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++|+|||||||.||||+++|+++.+..........+...  +++++..|++|..++. .++.+|..|+++++
T Consensus       593 ~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~--d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~  669 (1296)
T PRK10252        593 QLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTAD--DVVLQKTPCSFDVSVW-EFFWPFIAGAKLVM  669 (1296)
T ss_pred             CCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCC--CEEEEeCCcchhhhHH-HHHHHHhCCCEEEE
Confidence            22357899999999999999999999999999887776666555433  9999999999998885 78899999999999


Q ss_pred             cC---CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCc--cCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeec
Q 013780          267 MG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV  341 (436)
Q Consensus       267 ~~---~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~  341 (436)
                      .+   ..++..+++.++++++|++.++|+++..+.+......  ..++++|.+++||+++++++.+.|++.++ .++++ 
T Consensus       670 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~l~n-  747 (1296)
T PRK10252        670 AEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTG-APLHN-  747 (1296)
T ss_pred             CChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCC-CEEEe-
Confidence            85   3589999999999999999999999999887643322  34689999999999999999999999886 89999 


Q ss_pred             cccccccCCcccccCCCCC-----ccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhh
Q 013780          342 GYGMTETCAPISLENPLVG-----VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTL  416 (436)
Q Consensus       342 ~YG~tE~~~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~  416 (436)
                      .||+||++..++.......     .....++|+|+++++++|+| +.+++++.|+.|||+|+|+.++.|  |+++|+.|.
T Consensus       748 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~G--Y~~~~~~t~  824 (1296)
T PRK10252        748 LYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQG--YLGRPDLTA  824 (1296)
T ss_pred             CCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchh--hCCCcccch
Confidence            9999999876554332211     23456899999999999999 589999999999999999999999  999999999


Q ss_pred             hhcc---ccccCCeeecCCCCC
Q 013780          417 FLWG---CEHTDSFIRGKDQQT  435 (436)
Q Consensus       417 ~~~~---~~~~~~~~~tgD~~~  435 (436)
                      +.|.   +...++||+|||+|+
T Consensus       825 ~~f~~~~~~~~~~~y~TGDl~~  846 (1296)
T PRK10252        825 SRFIADPFAPGERMYRTGDVAR  846 (1296)
T ss_pred             hhcccCCCCCCCEEEecCceEE
Confidence            9882   223456999999874

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.6e-49  Score=390.77  Aligned_cols=367  Identities=19%  Similarity=0.246  Sum_probs=297.3

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.+.|.++++.+|+++|+++.  +..+||.||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus        35 ~~~~~~~~~~a~~~p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~  112 (516)
T PRK13383         35 TNPYTLLAVTAARWPGRTAIIDD--DGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADV  112 (516)
T ss_pred             CcHHHHHHHHHHHCCCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEE
Confidence            78999999999999999999976  5799999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|+++.++.+++.+++++++++.+++++...+.+.........+...                ... .  . .  .  ..
T Consensus       113 vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~----------------~~~-~--~-~--~--~~  168 (516)
T PRK13383        113 VPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPA----------------TAG-A--E-E--S--GG  168 (516)
T ss_pred             EEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccc----------------hhh-h--h-c--C--CC
Confidence            99999999999999999999999999987776655443222211100                000 0  0 0  0  00


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhh--hhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS--LMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV  264 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v  264 (436)
                      .....++.++++|||||||.||+|+++|.......  ........+  ..++++++.+|++|.+++. .++.++..|+++
T Consensus       169 ~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~  245 (516)
T PRK13383        169 RPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRL--RTGSRISVAMPMFHGLGLG-MLMLTIALGGTV  245 (516)
T ss_pred             CCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhcc--CCCCeEEEecCCcchhhHH-HHHHHHhcCCEE
Confidence            01123466799999999999999999997432221  111112222  2238999999999999996 677889999999


Q ss_pred             EEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780          265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG  342 (436)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~  342 (436)
                      ++...+++..+++.++++++|.+.++|.++..|.+....  ....++++|.+++||+++++++.++|.+.++ ..+++ .
T Consensus       246 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~-~  323 (516)
T PRK13383        246 LTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYG-DILYN-G  323 (516)
T ss_pred             EECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcC-chhhh-c
Confidence            999889999999999999999999999999999875432  1235789999999999999999999999997 88999 9


Q ss_pred             ccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780          343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  422 (436)
Q Consensus       343 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~  422 (436)
                      ||+||++..+...... .....+++|+|+|+++++|+|+ +++++++|+.|||+++|+.++.|  |++++..   .+   
T Consensus       324 YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~g~~~~~~--Y~~~~~~---~~---  393 (516)
T PRK13383        324 YGSTEVGIGALATPAD-LRDAPETVGKPVAGCPVRILDR-NNRPVGPRVTGRIFVGGELAGTR--YTDGGGK---AV---  393 (516)
T ss_pred             ccccccccceeccccc-cccCCCcccCCCCCcEEEEECC-CCCCCCCCCceEEEEecCccccc--ccCCchh---he---
Confidence            9999998655443322 1445789999999999999995 88999999999999999999999  9987642   12   


Q ss_pred             ccCCeeecCCCCC
Q 013780          423 HTDSFIRGKDQQT  435 (436)
Q Consensus       423 ~~~~~~~tgD~~~  435 (436)
                       .+||++|||+|+
T Consensus       394 -~~g~~~TGDl~~  405 (516)
T PRK13383        394 -VDGMTSTGDMGY  405 (516)
T ss_pred             -ecCceecceeEE
Confidence             367999999763

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-48  Score=386.85  Aligned_cols=372  Identities=19%  Similarity=0.215  Sum_probs=303.1

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      .++.++|.+.+.  ++++++++.  ++.+||.||.++++++|++|.++ |++++++|+++++|+++++++++||+++|++
T Consensus         5 ~~~~~~l~~~a~--~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~   80 (529)
T PRK07867          5 PTVAELLLPLAE--DDDRGLYFE--DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIV   80 (529)
T ss_pred             ccHHHHHHHhcc--cCCceEEEC--CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            578999988875  789999886  68999999999999999999986 8999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (436)
                      ++|+++.++.+++.+++++++++++|+++.....+........++..+.              ..+.+++..... ....
T Consensus        81 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~-~~~~  145 (529)
T PRK07867         81 PVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDS--------------PAWADELAAHRD-AEPP  145 (529)
T ss_pred             EEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEecc--------------ccHHHHhcccCC-CCCC
Confidence            9999999999999999999999999999877765544321112211110              123333322111 1122


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (436)
Q Consensus       186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~  265 (436)
                      .....++++++++|||||||.||+|+++|+++..+.......+.+..  .|++++.+|++|.+++...++.++..|++++
T Consensus       146 ~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~--~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  223 (529)
T PRK07867        146 FRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGP--DDVCYVSMPLFHSNAVMAGWAVALAAGASIA  223 (529)
T ss_pred             cccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCc--ccEEEEecchhHHHHHHHHHHHHHhcCceEE
Confidence            33456789999999999999999999999999887776655555433  3999999999999999877888999999999


Q ss_pred             EcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccc
Q 013780          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGM  345 (436)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~  345 (436)
                      +.+++++..+++.++++++|++.++|+.+..++..........+++|. ++||+.+++.. .++.+.++ .++++ .||+
T Consensus       224 ~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g-~~l~~-~YG~  299 (529)
T PRK07867        224 LRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRFG-CVVVD-GFGS  299 (529)
T ss_pred             ecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHhC-CcEEE-eecc
Confidence            998899999999999999999999999999888765433334467885 46888887764 67777886 89999 9999


Q ss_pred             cccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCC------------ceEEEE-ecCCcccCccccCCh
Q 013780          346 TETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQ------------LGEIWV-RGPNVTPGIVYINFF  412 (436)
Q Consensus       346 tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~------------~Gel~v-~g~~~~~g~~Y~~~~  412 (436)
                      ||+++.+...+    ....+++|.|+++  ++++|++++..++.|+            .|||++ +|++++.|  |+++|
T Consensus       300 TE~~~~~~~~~----~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~g--y~~~~  371 (529)
T PRK07867        300 TEGGVAITRTP----DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEG--YYNDP  371 (529)
T ss_pred             cccccccccCC----CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCccccc--ccCCh
Confidence            99976554322    2356789999999  7788877888899988            999999 99999999  99999


Q ss_pred             hhhhhhccccccCCeeecCCCCC
Q 013780          413 VFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       413 ~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +.+.+.+    .++||+|||+++
T Consensus       372 ~~~~~~~----~~g~~~TGD~~~  390 (529)
T PRK07867        372 EADAERM----RGGVYWSGDLAY  390 (529)
T ss_pred             Hhhhhhh----cCCeEeeccEEE
Confidence            9998877    578999999763

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=3e-48  Score=390.80  Aligned_cols=397  Identities=23%  Similarity=0.376  Sum_probs=313.0

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      .++.+.|.+.++++|+++|+++.  ++.+||.||.+++.++|+.|. +.|+++||+|+++++|+++++++++||+++|++
T Consensus        25 ~~~~~~l~~~~~~~~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~  102 (560)
T PRK08751         25 RTVAEVFATSVAKFADRPAYHSF--GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLT  102 (560)
T ss_pred             CcHHHHHHHHHHhCCCCceEEEC--CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeE
Confidence            47899999999999999999986  789999999999999999996 689999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccC-Cccc--cc-------------cccccC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSK-DKVS--SS-------------GLISRS  165 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~-~~~~--~~-------------~~~~~~  165 (436)
                      +++++|.++.+++.++++.++++++++++.....+....    ...++.... ....  ..             ......
T Consensus       103 ~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (560)
T PRK08751        103 VVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRI  182 (560)
T ss_pred             EeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhccccccCC
Confidence            999999999999999999999999999987665544321    111221110 0000  00             000001


Q ss_pred             cccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC---CCCcEEEech
Q 013780          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG---ELDHVVLCVL  242 (436)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~  242 (436)
                      .....+.+....... .........++++++++|||||||.||+|.++|.++..++...........   ..++++++.+
T Consensus       183 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (560)
T PRK08751        183 NGAIRFREALALGRK-HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITAL  261 (560)
T ss_pred             CccccHHHHHhccCC-CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEec
Confidence            111223333322211 112233456789999999999999999999999999877665433332211   1126788889


Q ss_pred             hHHHHHHHHHHHHhhccCCcEEEEc-CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCC
Q 013780          243 PMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL  321 (436)
Q Consensus       243 p~~~~~g~~~~~~~~l~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l  321 (436)
                      |++|.+++....+.++..|+++++. .++++..+++.++++++|++.++|.++..+.+.......++++||.+++||+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~  341 (560)
T PRK08751        262 PLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAV  341 (560)
T ss_pred             ChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCC
Confidence            9999999865566777777776655 567899999999999999999999999999987665666788999999999999


Q ss_pred             cHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCC
Q 013780          322 GKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN  401 (436)
Q Consensus       322 ~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~  401 (436)
                      ++++.+.|++.++ +++++ .||+||+++.++..... .....+++|.|+++++++++| +++..++.|+.|||+++|+.
T Consensus       342 ~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~  417 (560)
T PRK08751        342 QRSVAERWKQVTG-LTLVE-AYGLTETSPAACINPLT-LKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQ  417 (560)
T ss_pred             CHHHHHHHHHHhC-CeEEE-eeccccCCCceeccccc-ccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCc
Confidence            9999999999886 89999 99999998766544322 134567899999999999999 58899999999999999999


Q ss_pred             cccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          402 VTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       402 ~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ++.|  |+++|+.+.+.|   +.++||+|||+|+
T Consensus       418 ~~~g--y~~~~~~~~~~~---~~~g~~~TGD~~~  446 (560)
T PRK08751        418 VMKG--YWKRPEETAKVM---DADGWLHTGDIAR  446 (560)
T ss_pred             cchh--hcCChhhhhhcc---ccCCCccccceEE
Confidence            9999  999999988766   3568999999863

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-48  Score=392.24  Aligned_cols=400  Identities=21%  Similarity=0.284  Sum_probs=310.5

Q ss_pred             CchHHHHhhhcccCCCceEEEeCC-CCccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 013780           27 FSMVHFLFRNSASYSSKLALIDAD-SDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~-~~~~~Ty~el~~~~~~la~~L~~-~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~  104 (436)
                      +|+.++|.+.+..+|+++|+++.+ .++.+||.||.+++.++|+.|.+ .|+++||+|+++++|+++++++++||+++|+
T Consensus        10 ~~~~~~l~~~a~~~~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~   89 (576)
T PRK05620         10 LSLTRILEYGSTVHGDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGA   89 (576)
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCC
Confidence            889999999999999999998653 24799999999999999999986 7999999999999999999999999999999


Q ss_pred             eEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCcccccc-ccccCcccchhhHHhhhc
Q 013780          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSG-LISRSSKIVSFHDLIELS  178 (436)
Q Consensus       105 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  178 (436)
                      ++++++|..+.+++.++++.++++++|+++...+.+....     .+.+++.......... .......+.++.++....
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  169 (576)
T PRK05620         90 VFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGR  169 (576)
T ss_pred             EEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcC
Confidence            9999999999999999999999999999987665543321     1222222111000000 000112344577776543


Q ss_pred             CCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhc
Q 013780          179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL  258 (436)
Q Consensus       179 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l  258 (436)
                      .  .........++++++++|||||||.||+|.++|+++..+.........+.-..++++++.+|++|.+++. ..+.++
T Consensus       170 ~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~-~~~~~l  246 (576)
T PRK05620        170 S--TVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWG-VPLAAF  246 (576)
T ss_pred             C--CcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhH-HHHHHH
Confidence            3  2222344567899999999999999999999999987654432222112222349999999999999986 678889


Q ss_pred             cCCcEEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCe
Q 013780          259 QKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT  337 (436)
Q Consensus       259 ~~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~  337 (436)
                      ..|+++++.+ .+++..+++.++++++|++.++|+++..++...........+||.+++||+++++++.++|.+.++ ++
T Consensus       247 ~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~-~~  325 (576)
T PRK05620        247 MSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYG-VD  325 (576)
T ss_pred             hcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhC-Cc
Confidence            9999999885 579999999999999999999999999887654333334568999999999999999999999987 89


Q ss_pred             eeeccccccccCCcccccCCCCC------ccCcCccccccCCcEEEEEeCCCCccCC--CCCceEEEEecCCcccCcccc
Q 013780          338 IFQVGYGMTETCAPISLENPLVG------VRRSGSAGTLVAGVEAQIVSVDTLKPLP--PNQLGEIWVRGPNVTPGIVYI  409 (436)
Q Consensus       338 i~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~G~p~~~~~v~i~d~~~~~~~~--~g~~Gel~v~g~~~~~g~~Y~  409 (436)
                      +++ .||+||++..+....+...      .....++|++.++++++|+|+  +..++  .++.|||+++|+.++.|  ||
T Consensus       326 ~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~g--Y~  400 (576)
T PRK05620        326 VVH-VWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND--GQVMESTDRNEGEIQVRGNWVTAS--YY  400 (576)
T ss_pred             eee-eccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC--CccccCCCCCceEEEEEcCccccc--cc
Confidence            999 9999999876554332210      012347899999999999994  66554  47889999999999999  99


Q ss_pred             CChhhh----hhhc---------cccccCCeeecCCCCC
Q 013780          410 NFFVFT----LFLW---------GCEHTDSFIRGKDQQT  435 (436)
Q Consensus       410 ~~~~~~----~~~~---------~~~~~~~~~~tgD~~~  435 (436)
                      ++++.+    ...|         ..+..++||+|||+++
T Consensus       401 ~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~  439 (576)
T PRK05620        401 HSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGS  439 (576)
T ss_pred             CCccccccccccccccccchhhhcccccCCcEecCceEE
Confidence            999887    2222         1133568999999864

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.1e-49  Score=468.22  Aligned_cols=379  Identities=18%  Similarity=0.235  Sum_probs=317.0

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.++|.++++++|+++|+++.  +..+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+++
T Consensus       511 ~~~~~~~~~~a~~~p~~~A~~~~--~~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la~~~aG~~~  588 (5163)
T PRK12316        511 RGVHRLFEEQVERTPEAPALAFG--EETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY  588 (5163)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEeC--CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEE
Confidence            67999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|++|.++.+++.++++++++++++++......+..... ..++..+.                .........  .....
T Consensus       589 vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~----------------~~~~~~~~~--~~~~~  649 (5163)
T PRK12316        589 VPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAG-VQVLDLDR----------------PAAWLEGYS--EENPG  649 (5163)
T ss_pred             eccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccC-ceEEEecC----------------cchhhccCC--CCCCC
Confidence            999999999999999999999999998766544322211 11111110                000011111  11223


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++|+|||||||.||||+++|+++.+.+........+...  +++++.+|++|..+++ .++.+|..|+++++
T Consensus       650 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~fd~~~~-~~~~~L~~G~~l~i  726 (5163)
T PRK12316        650 TELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVG--DTVLQKTPFSFDVSVW-EFFWPLMSGARLVV  726 (5163)
T ss_pred             CCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCC--CEEEeeCCeehHHHHH-HHHHHHhCCCEEEE
Confidence            34567899999999999999999999999999988776666655433  9999999999999986 78999999999999


Q ss_pred             cC---CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          267 MG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       267 ~~---~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      .+   .+++..+++.++++++|++.++|+++..|.+...  ...+++||.+++||+++++++.++|.+.+++.++++ .|
T Consensus       727 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~Y  803 (5163)
T PRK12316        727 AAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYN-LY  803 (5163)
T ss_pred             CCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEe-Cc
Confidence            85   3689999999999999999999999999987543  235789999999999999999999999888899999 99


Q ss_pred             cccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc---
Q 013780          344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG---  420 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~---  420 (436)
                      |+||++..++............++|+|++|++++|+|+ +++++|.|+.|||+|+|+.++.|  |+++|+.|.+.|-   
T Consensus       804 G~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~p~G~~GEl~i~G~~v~~G--Yl~~~~~t~~~f~~~~  880 (5163)
T PRK12316        804 GPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDA-NLEPVPVGVLGELYLAGRGLARG--YHGRPGLTAERFVPSP  880 (5163)
T ss_pred             CcChheeeeeEEecccccCCCCCCccccCCCEEEEECC-CCCCCCCCCceEEEecccccChh--hCCChhhhhhhCCCCC
Confidence            99999854443322222445678999999999999995 89999999999999999999999  9999999999882   


Q ss_pred             ccccCCeeecCCCCC
Q 013780          421 CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ~~~~~~~~~tgD~~~  435 (436)
                      +...++||+|||+|+
T Consensus       881 ~~~~~~~y~TGDl~~  895 (5163)
T PRK12316        881 FVAGERMYRTGDLAR  895 (5163)
T ss_pred             CCCCCeeEecCccEE
Confidence            223457999999974

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=5.6e-49  Score=433.36  Aligned_cols=392  Identities=19%  Similarity=0.212  Sum_probs=306.4

Q ss_pred             CchHHHHhhhcccCCCceEEEeCC-------CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013780           27 FSMVHFLFRNSASYSSKLALIDAD-------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~   99 (436)
                      .++.++|.++++++|+++|+++..       .++.+||+||.++++++|++|.+.|+++|++|+|+++|++++++++|||
T Consensus       236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~  315 (1389)
T TIGR03443       236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV  315 (1389)
T ss_pred             CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence            579999999999999999998632       2478999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccch---HHHHhhcC---------CCcEEeccCCccccccccccCcc
Q 013780          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL---WDKVKDLN---------LPAVLLGSKDKVSSSGLISRSSK  167 (436)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~---~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  167 (436)
                      +++|++++|++|.++.+++.++++.++++++++....   ...+....         .+.+.+..+..        ...+
T Consensus       316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~  387 (1389)
T TIGR03443       316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGS--------LVGG  387 (1389)
T ss_pred             HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccc--------cccc
Confidence            9999999999999999999999999999999987542   11111100         00111100000        0000


Q ss_pred             cchh--hHHhhhcCC-CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhH
Q 013780          168 IVSF--HDLIELSGS-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM  244 (436)
Q Consensus       168 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~  244 (436)
                      ....  .+....... ..........++++++|+|||||||.||||+++|+++.+++........+..  .++++...|+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~~~~~~~  465 (1389)
T TIGR03443       388 SLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSE--NDKFTMLSGI  465 (1389)
T ss_pred             ccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCC--CCEEEEecCc
Confidence            0000  000000000 0011122345789999999999999999999999999988776655555533  3899999999


Q ss_pred             HHHHHHHHHHHhhccCCcEEEEcCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCC
Q 013780          245 FHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL  321 (436)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~v~~~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l  321 (436)
                      +|..++. .++.+|..|+++++++.   .++..+++.++++++|+++++|++++.|....   ...+++||.+++||+++
T Consensus       466 ~~d~~~~-~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l  541 (1389)
T TIGR03443       466 AHDPIQR-DMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDIL  541 (1389)
T ss_pred             eecchHH-HHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccC
Confidence            9988875 78999999999999854   36889999999999999999999999887543   23578999999999999


Q ss_pred             cHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCC---------ccCcCccccccCCcEEEEEeCC-CCccCCCCC
Q 013780          322 GKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG---------VRRSGSAGTLVAGVEAQIVSVD-TLKPLPPNQ  391 (436)
Q Consensus       322 ~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~p~~~~~v~i~d~~-~~~~~~~g~  391 (436)
                      ++...+++.+.+++.++++ .||+||++..++.......         .....++|+|+++++++|+|++ .+++++.|+
T Consensus       542 ~~~~~~~~~~~~~~~~l~n-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~  620 (1389)
T TIGR03443       542 TKRDCLRLQTLAENVCIVN-MYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGE  620 (1389)
T ss_pred             CHHHHHHHHHhCCCCEEEE-CccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCC
Confidence            9999999999888899999 9999999876554321100         1134678999999999999963 357899999


Q ss_pred             ceEEEEecCCcccCccccCChhhhhhhc--ccc-----------------------ccCCeeecCCCCC
Q 013780          392 LGEIWVRGPNVTPGIVYINFFVFTLFLW--GCE-----------------------HTDSFIRGKDQQT  435 (436)
Q Consensus       392 ~Gel~v~g~~~~~g~~Y~~~~~~~~~~~--~~~-----------------------~~~~~~~tgD~~~  435 (436)
                      +|||+|+|++++.|  |+++|+.|.+.|  .+|                       ..++||+|||+|+
T Consensus       621 ~GEL~i~G~~v~~G--Y~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~  687 (1389)
T TIGR03443       621 VGEIYVRAGGLAEG--YLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGR  687 (1389)
T ss_pred             ceEEEecccccchh--cCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCcee
Confidence            99999999999999  999999999988  222                       2368999999984

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=2.5e-48  Score=386.83  Aligned_cols=378  Identities=19%  Similarity=0.227  Sum_probs=310.0

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      +|+.+.|.+.++.+|+++++.+.  +..+||.||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~   79 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL--GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAY   79 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC--CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            57899999999999999999986  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +++++.++.+++.++++..+++++++++.....    ......+..                ..+.+......  .....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~~~--~~~~~  137 (503)
T PRK04813         80 IPVDVSSPAERIEMIIEVAKPSLIIATEELPLE----ILGIPVITL----------------DELKDIFATGN--PYDFD  137 (503)
T ss_pred             ecCCCCChHHHHHHHHHhcCCCEEEeccccccc----ccCCcEEeh----------------HHhhhhhhccc--ccccc
Confidence            999999999999999999999999998765110    000011100                01111111011  11112


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++++|||||||.||+|.++|+++..+.........+..  .+++++..|++|..++. .++.++..|+++++
T Consensus       138 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~v~  214 (503)
T PRK04813        138 HAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPE--GPQFLNQAPYSFDLSVM-DLYPTLASGGTLVA  214 (503)
T ss_pred             ccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCc--CceeeecCCcchhHhHH-HHHHHHhcCCEEEE
Confidence            3346788999999999999999999999999987776555544433  38999999999998875 77889999999998


Q ss_pred             cCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       267 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      .++   .++..+++.++++++|++.++|+++..+..........++++|.++++|+++++.+.+++.+.+++..+++ .|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~-~y  293 (503)
T PRK04813        215 LPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYN-TY  293 (503)
T ss_pred             cChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEe-Cc
Confidence            864   58899999999999999999999998876655545567889999999999999999999999997799999 99


Q ss_pred             cccccCCcccccCCCC---CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780          344 GMTETCAPISLENPLV---GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  420 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~---~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~  420 (436)
                      |+||++..++......   ......++|+|.++++++|+| +++..++.|+.|||+++|+.++.|  ||++++.+...|-
T Consensus       294 G~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~~  370 (503)
T PRK04813        294 GPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKG--YLNNPEKTAEAFF  370 (503)
T ss_pred             ccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccc--cCCChhHhHHhhc
Confidence            9999976554322111   134556899999999999999 589999999999999999999999  9999999988764


Q ss_pred             ccccCCeeecCCCCC
Q 013780          421 CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ~~~~~~~~~tgD~~~  435 (436)
                      ..+..+||+|||+|+
T Consensus       371 ~~~g~~~~~tGD~~~  385 (503)
T PRK04813        371 TFDGQPAYHTGDAGY  385 (503)
T ss_pred             cCCCceeEECCceEE
Confidence            334456999999764

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.6e-48  Score=389.08  Aligned_cols=389  Identities=20%  Similarity=0.242  Sum_probs=304.9

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~  104 (436)
                      .++.++|.+.++.+|++.++.+...+  +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~   89 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA   89 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            57899999999999999988764223  6899999999999999999999999999999999999999999999999999


Q ss_pred             eEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchhhHHhhhcC
Q 013780          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (436)
Q Consensus       105 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (436)
                      ++++++|..+.+++..+++.+++++++++....+.+.+..     .+.++...+...  ..  .....+.+++++.....
T Consensus        90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~  165 (539)
T PRK07008         90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAH--LP--AGSTPLLCYETLVGAQD  165 (539)
T ss_pred             EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCc--cc--cCCcccccHHHHhcccC
Confidence            9999999999999999999999999999987665544321     111122111110  00  01122455666554332


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhcc
Q 013780          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (436)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~  259 (436)
                        .........++++++++|||||||.||+|++||.++..+.........+....++++++..|++|.+++. ..+.++.
T Consensus       166 --~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~  242 (539)
T PRK07008        166 --GDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWG-LPYSAPL  242 (539)
T ss_pred             --CCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHH-HHHHHHh
Confidence              2222334567889999999999999999999999987543322111112112338999999999988774 5677889


Q ss_pred             CCcEEEEc-CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCee
Q 013780          260 KGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (436)
Q Consensus       260 ~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i  338 (436)
                      .|+++++. +.+++..+++.++++++|++.++|+++..+.+.......+++++|.++++|+++++++.+++++.++ +++
T Consensus       243 ~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~l  321 (539)
T PRK07008        243 TGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYG-VEV  321 (539)
T ss_pred             cCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhC-Cce
Confidence            99999987 4679999999999999999999999999999877666667899999999999999999999999997 999


Q ss_pred             eeccccccccCCcccccCCCC---------CccCcCccccccCCcEEEEEeCCCCccCCCC--CceEEEEecCCcccCcc
Q 013780          339 FQVGYGMTETCAPISLENPLV---------GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPGIV  407 (436)
Q Consensus       339 ~~~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~~g~~  407 (436)
                      ++ .||+||++..++......         ......++|+|+|+++++|+|+ ++.+++.+  +.|||+++|+.++.|  
T Consensus       322 ~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~-~~~~~~~~~~~~Gei~v~g~~~~~g--  397 (539)
T PRK07008        322 IH-AWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGD-DGRELPWDGKAFGDLQVRGPWVIDR--  397 (539)
T ss_pred             ec-ccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECC-CCCccCCCCCcceEEEEeCCccchh--
Confidence            99 999999987554332110         0112468999999999999995 78888754  579999999999999  


Q ss_pred             ccCChhhhhhhccccccCCeeecCCCC
Q 013780          408 YINFFVFTLFLWGCEHTDSFIRGKDQQ  434 (436)
Q Consensus       408 Y~~~~~~~~~~~~~~~~~~~~~tgD~~  434 (436)
                      |+++++.   .+    .++||+|||+|
T Consensus       398 y~~~~~~---~~----~~g~~~TGD~~  417 (539)
T PRK07008        398 YFRGDAS---PL----VDGWFPTGDVA  417 (539)
T ss_pred             hcCChhh---hh----cCCCcccCceE
Confidence            9998842   22    25688888875

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=3.2e-48  Score=395.19  Aligned_cols=402  Identities=19%  Similarity=0.208  Sum_probs=296.5

Q ss_pred             CCcCCCCCCCchHHHHhhhcccCCCceEEEeCCC-C--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH
Q 013780           18 PLVLPSDPSFSMVHFLFRNSASYSSKLALIDADS-D--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI   94 (436)
Q Consensus        18 ~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~-~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~   94 (436)
                      ..|+++ +..|+.+.+.++   .++++|+++.+. +  +.+||+||.+++.++|+.|+++|+++||+|+++++|++++++
T Consensus        79 ~~wf~~-~~~n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~  154 (652)
T TIGR01217        79 AQWFPG-ARLNYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVV  154 (652)
T ss_pred             CEECCC-CeeeHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence            356654 348888888764   468888877532 2  589999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchH---------HHHhhc----C-CCcEEeccCCcccccc
Q 013780           95 CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW---------DKVKDL----N-LPAVLLGSKDKVSSSG  160 (436)
Q Consensus        95 ~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~----~-~~~~~~~~~~~~~~~~  160 (436)
                      ++|||+++|++++|+++.++.+++.+++++++++++|+++...         +.+.+.    . .+.+++...... ...
T Consensus       155 ~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  233 (652)
T TIGR01217       155 AMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGP-RET  233 (652)
T ss_pred             HHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCC-ccc
Confidence            9999999999999999999999999999999999999987531         222211    1 122222111000 000


Q ss_pred             ccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhh-hhhHHhhhhccCCCCcEEE
Q 013780          161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA-SLMISAHQELVGELDHVVL  239 (436)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~  239 (436)
                      ......+...+++++..... ..........+++++|+|||||||.||||+++|++++.+ .........+  ..+|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~  310 (652)
T TIGR01217       234 EAPKIDGALDLEDFTAAAQA-AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDL--GPGDRLF  310 (652)
T ss_pred             ccccccCcccHHHHHhcccC-CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCC--CCCcEEE
Confidence            00001123456666543211 111223345689999999999999999999999987543 2222222333  2339999


Q ss_pred             echhHHHHHHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhcc--ccCccCCCcceE
Q 013780          240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNS--LVRKFDISSLKL  313 (436)
Q Consensus       240 ~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~--~~~~~~l~~lr~  313 (436)
                      +..|+.|+.+.  .++.+|..|+++++.+.    .++..+++.++++++|++..+|.++..+.+..  .....++++||.
T Consensus       311 ~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~  388 (652)
T TIGR01217       311 YYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQC  388 (652)
T ss_pred             EeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeE
Confidence            99999998643  45689999999999842    27889999999999999988888887776542  123457899999


Q ss_pred             EEecCCCCcHHHHHHHHhhCC-CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCc
Q 013780          314 VGSGAAPLGKELMEDCQKNIP-GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL  392 (436)
Q Consensus       314 i~~gg~~l~~~~~~~~~~~~~-~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~  392 (436)
                      +++||+++++++.+++.+.++ +..+.+ .||+||+++......+. .....+++|.|.+|++++|+|+ +|+++ +|+.
T Consensus       389 i~~gGe~l~~~~~~~~~~~~~~~~~~~~-~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~v~ivd~-~g~~~-~g~~  464 (652)
T TIGR01217       389 VASTGSPLPPDGFRWVYDEIKADVWLAS-ISGGTDICSCFAGANPT-LPVHIGEIQAPGLGTAVQSWDP-EGKPV-TGEV  464 (652)
T ss_pred             EEeecCCCCHHHHHHHHHHhCCCceEEe-ccCHHHHhccccCCCCC-CCCcCCccCCCcCCCceEEECC-CCCCC-CCCc
Confidence            999999999999999999885 345667 89999975443332222 1345688999999999999995 78888 5999


Q ss_pred             eEEEEecC--CcccCccccCChhhhhhhcccccc-CCeeecCCCCC
Q 013780          393 GEIWVRGP--NVTPGIVYINFFVFTLFLWGCEHT-DSFIRGKDQQT  435 (436)
Q Consensus       393 Gel~v~g~--~~~~g~~Y~~~~~~~~~~~~~~~~-~~~~~tgD~~~  435 (436)
                      |||+++|+  .++.|  ||++++.+.....++.+ +||++|||+|+
T Consensus       465 GEl~v~gp~p~~~~g--y~~~~~~t~~~~~~~~~~~g~~~tGDlg~  508 (652)
T TIGR01217       465 GELVCTNPMPSMPIR--FWNDPDGSKYRDAYFDTYPGVWRHGDWIT  508 (652)
T ss_pred             cEEEEecCCCccccc--eeCCCccchhHHhhhcCCCCEEEcCCcEE
Confidence            99999996  58999  99999866522222322 57889999874

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=9.3e-49  Score=458.50  Aligned_cols=379  Identities=22%  Similarity=0.287  Sum_probs=315.4

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.++|.++++++|+++|+++.  +..+||+||.++++++|+.|.+.|+++|++|+|++++++++++++|||+++|+++
T Consensus      1574 ~~~~~~~~~~a~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG~~~ 1651 (3956)
T PRK12467       1574 RLVHQLIEDQAAATPEAVALVFG--EQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAY 1651 (3956)
T ss_pred             ccHHHHHHHHHHhCCCCeEEEeC--CcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccCcee
Confidence            67999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-CCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (436)
                      +|++|.++.+++.++++++++++++++......+.... .+.+.+. .                 ..+......  ....
T Consensus      1652 vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~~~--~~~~ 1711 (3956)
T PRK12467       1652 VPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLD-Q-----------------EDDWLEGYS--DSNP 1711 (3956)
T ss_pred             eecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEec-c-----------------ccchhccCC--CCCC
Confidence            99999999999999999999999999877655443221 1111111 0                 000111111  1122


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (436)
Q Consensus       186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~  265 (436)
                      .....++++++|+|||||||.||||+++|+++.+.+........+..  .++++...|++|..+++ .++.+|..|++++
T Consensus      1712 ~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~fd~~~~-~~~~~L~~G~~lv 1788 (3956)
T PRK12467       1712 AVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSA--ADVVLQFTSFAFDVSVW-ELFWPLINGARLV 1788 (3956)
T ss_pred             CCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCc--ccEEEEecCccHHHHHH-HHHHHHhCCCEEE
Confidence            33456789999999999999999999999999988776655555433  39999999999999986 7899999999999


Q ss_pred             EcCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780          266 SMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG  342 (436)
Q Consensus       266 ~~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~  342 (436)
                      +.++   .++..+++.|+++++|++.++|+++..|.+... ....+++||.+++||+++++++.+.|.+.+++.++++ .
T Consensus      1789 i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n-~ 1866 (3956)
T PRK12467       1789 IAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFN-L 1866 (3956)
T ss_pred             EcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEe-C
Confidence            9853   479999999999999999999999999987532 2345789999999999999999999999998788999 9


Q ss_pred             ccccccCCcccccCCC---CCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhc
Q 013780          343 YGMTETCAPISLENPL---VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW  419 (436)
Q Consensus       343 YG~tE~~~~~~~~~~~---~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~  419 (436)
                      ||+||++..++.....   .......++|+|+++++++|+| ++++++|.|.+|||+|+|+.++.|  |+++|+.|.+.|
T Consensus      1867 YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~G--Yl~~p~~t~~~f 1943 (3956)
T PRK12467       1867 YGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARG--YLNRPALTAERF 1943 (3956)
T ss_pred             ccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccccc--ccCChhhhhhhC
Confidence            9999998766543221   1123357899999999999999 589999999999999999999999  999999999988


Q ss_pred             c--ccc--cCCeeecCCCCC
Q 013780          420 G--CEH--TDSFIRGKDQQT  435 (436)
Q Consensus       420 ~--~~~--~~~~~~tgD~~~  435 (436)
                      .  .+.  .++||+|||+|+
T Consensus      1944 ~~~p~~~~~~r~yrTGDl~~ 1963 (3956)
T PRK12467       1944 VADPFGTVGSRLYRTGDLAR 1963 (3956)
T ss_pred             cCCCCCCCCccceeccceEE
Confidence            2  121  346999999874

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.7e-48  Score=391.03  Aligned_cols=391  Identities=18%  Similarity=0.227  Sum_probs=303.9

Q ss_pred             CCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 013780           25 PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (436)
Q Consensus        25 ~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~  104 (436)
                      ...|+.+.|.++++++|+++|+++.  ++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus        35 ~~~tl~~~l~~~a~~~p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~  112 (600)
T PRK08279         35 SKRSLGDVFEEAAARHPDRPALLFE--DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGA  112 (600)
T ss_pred             CcccHHHHHHHHHHhCCCCcEEEeC--CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence            3488999999999999999999987  78999999999999999999999999999999999999999999999999999


Q ss_pred             eEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccCCccccccccccCcccchhhHHhhhcCC
Q 013780          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (436)
Q Consensus       105 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (436)
                      +++++++.++.+++.++++.++++++|++++..+.+....    ....++..+....     .....+..+.+.....+.
T Consensus       113 ~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  187 (600)
T PRK08279        113 VVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTL-----DDPEGYEDLAAAAAGAPT  187 (600)
T ss_pred             EEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccc-----cccccHHHHhhhcccCCc
Confidence            9999999999999999999999999999987766554432    1111121111000     001122222222211111


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  260 (436)
                      ...........+++++|+|||||||.||+|++||.++..++........+..  ++++++.+|++|.+++...++.++..
T Consensus       188 ~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~--~d~~l~~~pl~h~~g~~~~~~~~l~~  265 (600)
T PRK08279        188 TNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTP--DDVLYCCLPLYHNTGGTVAWSSVLAA  265 (600)
T ss_pred             cCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCC--CcEEEEecCchhhhhHHHHHHHHHhc
Confidence            0111223346789999999999999999999999999998887666654433  39999999999999998778888999


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (436)
Q Consensus       261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~  340 (436)
                      |+++++.+.+++..+++.++++++|++.++|+++..+.+..........++|.+  +|+.+++++.++|.+.|+...+++
T Consensus       266 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~  343 (600)
T PRK08279        266 GATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILE  343 (600)
T ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeee
Confidence            999999999999999999999999999999999999888655444455677764  477899999999999998567899


Q ss_pred             ccccccccCCcccccCCCCCccCcCccccccC----CcEEE---------EEeCC-CCccCCCCCceEEE--EecCCccc
Q 013780          341 VGYGMTETCAPISLENPLVGVRRSGSAGTLVA----GVEAQ---------IVSVD-TLKPLPPNQLGEIW--VRGPNVTP  404 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~----~~~v~---------i~d~~-~~~~~~~g~~Gel~--v~g~~~~~  404 (436)
                       .||+||++......     ...++++|.+.+    +..+.         +.+.+ ....+++|+.|||+  ++|+.++.
T Consensus       344 -~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~  417 (600)
T PRK08279        344 -FYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFD  417 (600)
T ss_pred             -eecccccceeeccc-----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccc
Confidence             99999987543321     345567887665    33332         33321 11357889999998  78999999


Q ss_pred             CccccCChhhhhhhcc---ccccCCeeecCCCCC
Q 013780          405 GIVYINFFVFTLFLWG---CEHTDSFIRGKDQQT  435 (436)
Q Consensus       405 g~~Y~~~~~~~~~~~~---~~~~~~~~~tgD~~~  435 (436)
                      |  | ++++.+.+.|-   +...++||+|||+|+
T Consensus       418 G--Y-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~  448 (600)
T PRK08279        418 G--Y-TDPEASEKKILRDVFKKGDAWFNTGDLMR  448 (600)
T ss_pred             c--c-CCchhhHHHHhhcccCCCCceEeecceEE
Confidence            9  9 88888887661   123468999999974

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.7e-48  Score=462.91  Aligned_cols=379  Identities=20%  Similarity=0.239  Sum_probs=314.5

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.+.|.++++++|+++|+++.  +..+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+++
T Consensus      2003 ~~~~~~~~~~a~~~p~~~A~~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aGa~~ 2080 (5163)
T PRK12316       2003 PGVHQRIAEQAARAPEAIAVVFG--DQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAY 2080 (5163)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEcC--CCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhceEE
Confidence            58999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      ||++|.++.+++.+++++++++++++++.....+..... ...+..+                .... .....  ...+.
T Consensus      2081 vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~-~~~~~~~----------------~~~~-~~~~~--~~~~~ 2140 (5163)
T PRK12316       2081 VPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAG-VARLPLD----------------RDAE-WADYP--DTAPA 2140 (5163)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccc-cceEecc----------------chhh-hhccC--ccCCC
Confidence            999999999999999999999999999876554322111 1111111                0000 00001  11123


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++|+|||||||.||||+++|+++.+.+........+...  ++++...|++|..++. .++.+|..|+++++
T Consensus      2141 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~--d~~l~~~~~~fd~~~~-~~~~~L~~G~~~~~ 2217 (5163)
T PRK12316       2141 VQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPA--DCELQFMSFSFDGAHE-QWFHPLLNGARVLI 2217 (5163)
T ss_pred             CCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCc--ceEEEecCchHHHHHH-HHHHHHhCCCEEEe
Confidence            34578999999999999999999999999999988876666655433  9999999999988875 89999999999988


Q ss_pred             cC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccc
Q 013780          267 MG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYG  344 (436)
Q Consensus       267 ~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG  344 (436)
                      .+  .+++..+++.++++++|++.++|+++..|.+...... ..++||.+++||+++++++.++|.+.+++..+++ .||
T Consensus      2218 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~YG 2295 (5163)
T PRK12316       2218 RDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFN-GYG 2295 (5163)
T ss_pred             CCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEE-Ccc
Confidence            75  3689999999999999999999999999987654333 3458999999999999999999999988899999 999


Q ss_pred             ccccCCcccccCCCCCc---cCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc-
Q 013780          345 MTETCAPISLENPLVGV---RRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG-  420 (436)
Q Consensus       345 ~tE~~~~~~~~~~~~~~---~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~-  420 (436)
                      +||++..++........   ....++|+|+++++++|+|+ +++++|.|++|||+|+|+.++.|  |+++|+.|.+.|- 
T Consensus      2296 ~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~vp~g~~GEl~i~G~~v~~G--Y~~~p~~T~~~f~~ 2372 (5163)
T PRK12316       2296 PTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDA-DLNLLAPGMAGELYLGGEGLARG--YLNRPGLTAERFVP 2372 (5163)
T ss_pred             chhheeeeeeeecccccccCCCcCCcccccCCCEEEEECC-CCCCCCCCCeeEEEecchhhccc--ccCChhhhhhhccC
Confidence            99998765543322111   12358999999999999995 88999999999999999999999  9999999999982 


Q ss_pred             -ccc--cCCeeecCCCCC
Q 013780          421 -CEH--TDSFIRGKDQQT  435 (436)
Q Consensus       421 -~~~--~~~~~~tgD~~~  435 (436)
                       -+.  .++||+|||+|+
T Consensus      2373 ~~~~~~~~~~yrTGDl~~ 2390 (5163)
T PRK12316       2373 DPFSASGERLYRTGDLAR 2390 (5163)
T ss_pred             CCCCCCCCeeEecccEEE
Confidence             121  357999999984

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-47  Score=385.34  Aligned_cols=396  Identities=28%  Similarity=0.417  Sum_probs=311.9

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      .++.++|.+.++++|+++|+++.  +..+||.||.++++++|+.|. +.|+++|++|+++++|++++++++|||+++|++
T Consensus        23 ~~l~~~l~~~a~~~p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~  100 (560)
T PRK08974         23 QSLVDMFEQAVARYADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMI  100 (560)
T ss_pred             ccHHHHHHHHHHhCCCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence            57999999999999999999986  789999999999999999998 489999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccCCcc-cc-cc-c-------------cccC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKV-SS-SG-L-------------ISRS  165 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~-~~-~~-~-------------~~~~  165 (436)
                      ++|++|.++.+++.++++.++++++++++...+.+....    ...++....... .. .. .             ....
T Consensus       101 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (560)
T PRK08974        101 VVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYHL  180 (560)
T ss_pred             EeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccccC
Confidence            999999999999999999999999999876544433221    111111110000 00 00 0             0000


Q ss_pred             cccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh-ccCCCCcEEEechhH
Q 013780          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPM  244 (436)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~p~  244 (436)
                      +....+.+....... ..........+++++++|||||||.||+|.++|.++..+......... .....++.++..+|+
T Consensus       181 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~  259 (560)
T PRK08974        181 PDAISFRSALHKGRR-MQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPL  259 (560)
T ss_pred             CCcccHHHHhhccCC-CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcH
Confidence            011122222221111 111223346789999999999999999999999999876544322221 112223788899999


Q ss_pred             HHHHHHHHHHHhhccCCcEEEEc-CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcH
Q 013780          245 FHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (436)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~  323 (436)
                      +|.+++....+.++..|+++++. +..++..+++.++++++|++.++|+++..|.+........++++|.+++||+++++
T Consensus       260 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~  339 (560)
T PRK08974        260 YHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQ  339 (560)
T ss_pred             HHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCH
Confidence            99999876677788889887766 45688999999999999999999999999988766566678899999999999999


Q ss_pred             HHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcc
Q 013780          324 ELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT  403 (436)
Q Consensus       324 ~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~  403 (436)
                      .+.++|++.++ .++++ .||+||++..+....... ..+.+++|.|+|+++++|+|+ ++.+++.|+.|||+++|+.++
T Consensus       340 ~~~~~~~~~~g-~~~~~-~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~g~~~~  415 (560)
T PRK08974        340 AVAERWVKLTG-QYLLE-GYGLTECSPLVSVNPYDL-DYYSGSIGLPVPSTEIKLVDD-DGNEVPPGEPGELWVKGPQVM  415 (560)
T ss_pred             HHHHHHHHHhC-CcEEe-eecccccCceeeccCCCC-cccCCccccCcCCCEEEEECC-CCCCCCCCCceEEEEecCCcc
Confidence            99999999886 89999 999999987666543321 345789999999999999995 789999999999999999999


Q ss_pred             cCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          404 PGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       404 ~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .|  |+++++.+...|    .++||+|||+++
T Consensus       416 ~g--y~~~~~~~~~~~----~~g~~~TGDl~~  441 (560)
T PRK08974        416 LG--YWQRPEATDEVI----KDGWLATGDIAV  441 (560)
T ss_pred             hh--hcCChhhhhhhh----hcCCcccCCEEE
Confidence            99  999999988877    578999999764

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.2e-47  Score=386.35  Aligned_cols=395  Identities=19%  Similarity=0.277  Sum_probs=301.8

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      ++|+...+.+.+..+|+++|+++.  +..+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus        19 ~~~~~~~~~~~~~~~p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v   96 (567)
T PLN02479         19 ALTPLWFLERAAVVHPTRKSVVHG--SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAV   96 (567)
T ss_pred             ccCHHHHHHHHHhhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcE
Confidence            477899999999999999999986  678999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhc------------CCCcEEeccCCcc-ccccccccCcccchhh
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL------------NLPAVLLGSKDKV-SSSGLISRSSKIVSFH  172 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  172 (436)
                      ++++++..+.+++.++++.++++++++++...+.....            ..+.++...+... ..........+...+.
T Consensus        97 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (567)
T PLN02479         97 VNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEYE  176 (567)
T ss_pred             EEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccHH
Confidence            99999999999999999999999999998765433221            1112222211100 0000000112334556


Q ss_pred             HHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH
Q 013780          173 DLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (436)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~  252 (436)
                      +++..... ..........++.++++|||||||.||+|++||+++...+......+.+.  .++++++.+|++|.+++..
T Consensus       177 ~~~~~~~~-~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~h~~~~~~  253 (567)
T PLN02479        177 KFLETGDP-EFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMN--EGAVYLWTLPMFHCNGWCF  253 (567)
T ss_pred             HHHhcccc-ccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCC--CCCEEEEecchhhhhhHHH
Confidence            65544321 11111122334677799999999999999999999876655443333332  3389999999999999865


Q ss_pred             HHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCc-cCCCcceEEEecCCCCcHHHHHHHHh
Q 013780          253 ILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK-FDISSLKLVGSGAAPLGKELMEDCQK  331 (436)
Q Consensus       253 ~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~-~~l~~lr~i~~gg~~l~~~~~~~~~~  331 (436)
                      .+...+..|.++++ ..+++..+++.++++++|++.++|+++..|.+...... ..++++|.++++|+++++.+.++|.+
T Consensus       254 ~~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~  332 (567)
T PLN02479        254 TWTLAALCGTNICL-RQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFAMSE  332 (567)
T ss_pred             HHHHHhhcCceEec-cCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHHHHh
Confidence            55556666666654 56899999999999999999999999999987654333 25789999999999999999999987


Q ss_pred             hCCCCeeeeccccccccCCcccccC--C-------CCCccCcCccccccCCcE-EEEEeCCCCccCCCC--CceEEEEec
Q 013780          332 NIPGATIFQVGYGMTETCAPISLEN--P-------LVGVRRSGSAGTLVAGVE-AQIVSVDTLKPLPPN--QLGEIWVRG  399 (436)
Q Consensus       332 ~~~~~~i~~~~YG~tE~~~~~~~~~--~-------~~~~~~~~~~G~p~~~~~-v~i~d~~~~~~~~~g--~~Gel~v~g  399 (436)
                      .  +.++++ .||+||+++.+....  +       ........++|.+.++++ ++|+|++++.+++.+  +.|||+++|
T Consensus       333 ~--~~~~~~-~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g  409 (567)
T PLN02479        333 K--GFRVTH-TYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRG  409 (567)
T ss_pred             c--CCceec-ccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEec
Confidence            6  489999 999999865433211  0       000111245788888875 899997688888764  679999999


Q ss_pred             CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          400 PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       400 ~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ++++.|  ||++|+.+.+.|    .++||+|||+|+
T Consensus       410 ~~~~~G--Y~~~~~~t~~~~----~~g~~~TGDl~~  439 (567)
T PLN02479        410 NMVMKG--YLKNPKANEEAF----ANGWFHSGDLGV  439 (567)
T ss_pred             cchhhh--hhcCcccccchh----cCCceecceeEE
Confidence            999999  999999999988    478999999863

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-47  Score=383.04  Aligned_cols=393  Identities=21%  Similarity=0.275  Sum_probs=305.1

Q ss_pred             CCCCCCchHHHHhhhcccCCCceEEEeCCCC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013780           22 PSDPSFSMVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (436)
Q Consensus        22 ~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~   99 (436)
                      +.+.++|+.++|.++++++|++++++...++  +++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||
T Consensus         5 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~   84 (542)
T PRK06018          5 MQDWPLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI   84 (542)
T ss_pred             hhcCCCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence            3344589999999999999999999853223  78999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchhhHH
Q 013780          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDL  174 (436)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (436)
                      +++|+++++++|..+.+++..+++.+++++++++....+.+.+..     .+.++...+...  .. .........+.++
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~  161 (542)
T PRK06018         85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH--MP-QTTLKNAVAYEEW  161 (542)
T ss_pred             HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccc--cc-ccCccccccHHHH
Confidence            999999999999999999999999999999999987665554321     122222211100  00 0111123345555


Q ss_pred             hhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhh--HHhhhhccCCCCcEEEechhHHHHHHHHH
Q 013780          175 IELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM--ISAHQELVGELDHVVLCVLPMFHVFGLSV  252 (436)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~g~~~  252 (436)
                      +....  .........++++++++|||||||.||+|++||++.+.....  ......+  ..+++++...|++|.+++. 
T Consensus       162 ~~~~~--~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~p~~h~~~~~-  236 (542)
T PRK06018        162 IAEAD--GDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGT--SAADTMLPVVPLFHANSWG-  236 (542)
T ss_pred             hccCC--cccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCC--CCCCEEEEecCHHHHhhhH-
Confidence            54432  222233456678999999999999999999999975322111  1122222  2338999999999999886 


Q ss_pred             HHHhhccCCcEEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHh
Q 013780          253 ILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK  331 (436)
Q Consensus       253 ~~~~~l~~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~  331 (436)
                      ..+.++..|+++++.. .+++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.++|++
T Consensus       237 ~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~  316 (542)
T PRK06018        237 IAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED  316 (542)
T ss_pred             HHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH
Confidence            5567889999998874 678999999999999999999999999998877666667889999999999999999999999


Q ss_pred             hCCCCeeeeccccccccCCcccccCCCC--C-------ccCcCccccccCCcEEEEEeCCCCccCCCC--CceEEEEecC
Q 013780          332 NIPGATIFQVGYGMTETCAPISLENPLV--G-------VRRSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGP  400 (436)
Q Consensus       332 ~~~~~~i~~~~YG~tE~~~~~~~~~~~~--~-------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g--~~Gel~v~g~  400 (436)
                       ++ .++++ .||+||++.+.+......  .       .....++|+|.++++++|+|+ +++.++.+  ..|||+++|+
T Consensus       317 -~~-~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~-~~~~~~~~~~~~Gel~i~g~  392 (542)
T PRK06018        317 -MG-VEVRH-AWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD-AGKELPWDGKTFGRLKVRGP  392 (542)
T ss_pred             -hC-CCeEe-eecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECC-CCCCCCCCCCceeEEEEecC
Confidence             75 99999 999999987655321110  0       112357899999999999995 78887753  6799999999


Q ss_pred             CcccCccccCChhhhhhhccccccCCeeecCCCC
Q 013780          401 NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQ  434 (436)
Q Consensus       401 ~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~  434 (436)
                      +++.|  ||++..   .   .++.++||+|||++
T Consensus       393 ~~~~g--y~~~~~---~---~~~~~~~~~TGDl~  418 (542)
T PRK06018        393 AVAAA--YYRVDG---E---ILDDDGFFDTGDVA  418 (542)
T ss_pred             Ccchh--hhcCcc---c---EecCCcEEEcCCEE
Confidence            99999  998322   2   22357899999976

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-47  Score=380.44  Aligned_cols=376  Identities=22%  Similarity=0.273  Sum_probs=290.8

Q ss_pred             hhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCC
Q 013780           34 FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY  113 (436)
Q Consensus        34 ~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~  113 (436)
                      -.+++++|+++|+++.+++..+||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++++++.+
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~   83 (501)
T PRK13390          4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHL   83 (501)
T ss_pred             chhhhhCCCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCC
Confidence            35667899999999865578999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCc-EEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCCCCCCC
Q 013780          114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA-VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQT  192 (436)
Q Consensus       114 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (436)
                      +.+++.++++.++++++++++............. ..+...         ........+++......      +......
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~------~~~~~~~  148 (501)
T PRK13390         84 TAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFG---------GEIDGFGSFEAALAGAG------PRLTEQP  148 (501)
T ss_pred             CHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEec---------CcccccccHHHHhcccC------CCCCCCc
Confidence            9999999999999999999875543322221110 111100         00111122332222111      0111223


Q ss_pred             CeEEEEcCCCCCCCCcceeh--hhhHHHhhhhhH----HhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          193 DAAALLYSSGTTGVSKGVIL--THKNFIAASLMI----SAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       193 ~~a~i~~TSGtTG~pK~v~~--t~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      +.++|+|||||||.||+|++  +|.++.......    .....+  ...+++++.+|++|..++. .....+..|+++++
T Consensus       149 ~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~h~~~~~-~~~~~~~~g~~~~~  225 (501)
T PRK13390        149 CGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDI--SESDIYYSSAPIYHAAPLR-WCSMVHALGGTVVL  225 (501)
T ss_pred             ccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCC--CCCCeEEecccchhhhHHH-HHHHHHhcCceEEE
Confidence            57999999999999999995  555554332111    112222  2339999999999999885 33445678999999


Q ss_pred             cCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccc
Q 013780          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYG  344 (436)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG  344 (436)
                      .+.+++..+++.++++++|++.++|+++..+.+....  ...+++++|.+++||+++++++.+.+++.++ .++++ .||
T Consensus       226 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~-~YG  303 (501)
T PRK13390        226 AKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLG-PIVYE-YYS  303 (501)
T ss_pred             cCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcC-Cceee-eec
Confidence            9889999999999999999999999999998875432  3346789999999999999999999999887 88999 999


Q ss_pred             ccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccccc
Q 013780          345 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHT  424 (436)
Q Consensus       345 ~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~  424 (436)
                      +||+++++....... ....+++|+|+++ +++|+| ++++++++|+.|||+++|+.++.|  |+++|+.+.+.+.. ..
T Consensus       304 ~tE~~~~~~~~~~~~-~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~t~~~~~~-~~  377 (501)
T PRK13390        304 STEAHGMTFIDSPDW-LAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFR--YLNDPEKTAAAQHP-AH  377 (501)
T ss_pred             ccccCceEEecchhh-ccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCcccc--ccCChhhhHHhhcc-CC
Confidence            999987554433221 3456799999999 799999 589999999999999999999999  99999999887621 12


Q ss_pred             CCeeecCCCCC
Q 013780          425 DSFIRGKDQQT  435 (436)
Q Consensus       425 ~~~~~tgD~~~  435 (436)
                      ++|++|||+|+
T Consensus       378 ~~w~~tGDl~~  388 (501)
T PRK13390        378 PFWTTVGDLGS  388 (501)
T ss_pred             CceEEcCceEE
Confidence            57999999764

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-47  Score=378.15  Aligned_cols=348  Identities=25%  Similarity=0.301  Sum_probs=288.4

Q ss_pred             cccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHH
Q 013780           37 SASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVS  116 (436)
Q Consensus        37 ~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~  116 (436)
                      ++..++++|+++.  ++.+||.||.++++++|..|.     ++|+|+++++|+++++++++||+++|++++++++..+.+
T Consensus        10 ~~~~~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~   82 (471)
T PRK07787         10 AAAADIADAVRIG--GRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVA   82 (471)
T ss_pred             hcccCCceEEEeC--CcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChH
Confidence            4567889999986  799999999999999999985     579999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEE
Q 013780          117 ELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  196 (436)
Q Consensus       117 ~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (436)
                      ++.++++.+++++++++++...  .  ......+...              ..            .........++++++
T Consensus        83 ~l~~~l~~~~~~~il~~~~~~~--~--~~~~~~~~~~--------------~~------------~~~~~~~~~~~~~a~  132 (471)
T PRK07787         83 ERRHILADSGAQAWLGPAPDDP--A--GLPHVPVRLH--------------AR------------SWHRYPEPDPDAPAL  132 (471)
T ss_pred             HHHHHHHhcCCCEEEecCCccc--c--cccceeeecc--------------cc------------ccccCCCCCCCceEE
Confidence            9999999999999999763110  0  0000000000              00            000111235689999


Q ss_pred             EEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHH
Q 013780          197 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMAL  276 (436)
Q Consensus       197 i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~  276 (436)
                      ++|||||||.||+|+++|+++..+.......+.+..  .+++++.+|++|.+|++..++.++..|+++++.+.+++..++
T Consensus       133 i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~  210 (471)
T PRK07787        133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTA--DDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYA  210 (471)
T ss_pred             EEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCc--cceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHH
Confidence            999999999999999999999988776655555433  389999999999999988899999999999999889999999


Q ss_pred             HHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccC
Q 013780          277 RAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLEN  356 (436)
Q Consensus       277 ~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~  356 (436)
                      +.++ +++|++.++|+++..|.+.... ...++++|.+++||+++++++.++|++.++ .++++ .||+||++..+....
T Consensus       211 ~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~~~~~~  286 (471)
T PRK07787        211 QALS-EGGTLYFGVPTVWSRIAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALTG-HRPVE-RYGMTETLITLSTRA  286 (471)
T ss_pred             HHHh-hCceEEEcchHHHHHHHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHcC-CCeec-ccCccccCcceecCC
Confidence            9999 9999999999999999875433 236789999999999999999999999887 89999 999999976544332


Q ss_pred             CCCCccCcCccccccCCcEEEEEeCCCCccCC-CCC-ceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCC
Q 013780          357 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP-PNQ-LGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQ  434 (436)
Q Consensus       357 ~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~-~g~-~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~  434 (436)
                      ..  ..+++++|+|+++++++|+|+ ++.+++ .|+ .|||+++|+.++.|  |+++++.+.+.|.   .++||+|||+|
T Consensus       287 ~~--~~~~~~vG~~~~g~~~~i~d~-~~~~~~~~~~~~Gei~v~g~~~~~g--y~~~~~~t~~~~~---~~~~~~TGDlg  358 (471)
T PRK07787        287 DG--ERRPGWVGLPLAGVETRLVDE-DGGPVPHDGETVGELQVRGPTLFDG--YLNRPDATAAAFT---ADGWFRTGDVA  358 (471)
T ss_pred             CC--cccCCcccccCCCcEEEEECC-CCCCCCCCCCCceEEEEECcccchh--hcCChhhchhccc---CCCceecCceE
Confidence            22  456788999999999999995 678887 354 89999999999999  9999999988772   46899999976


Q ss_pred             C
Q 013780          435 T  435 (436)
Q Consensus       435 ~  435 (436)
                      .
T Consensus       359 ~  359 (471)
T PRK07787        359 V  359 (471)
T ss_pred             E
Confidence            3

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-47  Score=388.03  Aligned_cols=382  Identities=21%  Similarity=0.288  Sum_probs=290.0

Q ss_pred             CchHHHHhhhcccCCCceEEEeCC-------CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013780           27 FSMVHFLFRNSASYSSKLALIDAD-------SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~   99 (436)
                      |++.+.|.+++..+|+++|+++.+       ..+.+||.||.+++.++|+.|.++| .+||+|+|+++|++++++++|||
T Consensus         1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~   79 (578)
T PRK05850          1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA   79 (578)
T ss_pred             CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence            578899999999999999998642       1268999999999999999999999 68999999999999999999999


Q ss_pred             HHhCCeEeecCC---CCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCC------cEEeccCCccccccccccCcccch
Q 013780          100 IAIGAIASTANP---VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLP------AVLLGSKDKVSSSGLISRSSKIVS  170 (436)
Q Consensus       100 ~~~G~~~v~l~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  170 (436)
                      +++|++++|+++   ..+.+++.++++.++++++++++...+.+......      ..++..+                .
T Consensus        80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~  143 (578)
T PRK05850         80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVD----------------L  143 (578)
T ss_pred             HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeec----------------c
Confidence            999999999997   44688999999999999999998776655432100      0011000                0


Q ss_pred             hhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhcc----CCCCcEEEechhHHH
Q 013780          171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV----GELDHVVLCVLPMFH  246 (436)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~  246 (436)
                      + +...  .  ..........+++++++|||||||.||+|.++|+++..++..........    ....+++++.+|++|
T Consensus       144 ~-~~~~--~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h  218 (578)
T PRK05850        144 L-DLDS--P--RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH  218 (578)
T ss_pred             c-cccc--C--CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence            0 0000  0  11112234568999999999999999999999999988765543332111    122389999999999


Q ss_pred             HHHHHHHHHhhccCCcEEEEcCCC----CHHHHHHHHHHhcceEEEecHHHHH-HHHhcc---ccCccCCCcceEEEecC
Q 013780          247 VFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIIL-ALAKNS---LVRKFDISSLKLVGSGA  318 (436)
Q Consensus       247 ~~g~~~~~~~~l~~G~~v~~~~~~----~~~~~~~~l~~~~~t~l~~~p~~~~-~l~~~~---~~~~~~l~~lr~i~~gg  318 (436)
                      ..|+...++.++..|+++++.++.    ++..+++.+++++++.+ .+|..+. .+....   .....+++++|.+++||
T Consensus       219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg  297 (578)
T PRK05850        219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGS  297 (578)
T ss_pred             CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECc
Confidence            999987799999999999998643    78999999999999865 5565543 333321   11234678999999999


Q ss_pred             CCCcHHHHHHHHhhCC-----CCeeeeccccccccCCcccccCCCCCc-----------------------cCcCccccc
Q 013780          319 APLGKELMEDCQKNIP-----GATIFQVGYGMTETCAPISLENPLVGV-----------------------RRSGSAGTL  370 (436)
Q Consensus       319 ~~l~~~~~~~~~~~~~-----~~~i~~~~YG~tE~~~~~~~~~~~~~~-----------------------~~~~~~G~p  370 (436)
                      +++++++.++|.+.|+     +..+++ .||+||++..+.........                       .....+|.|
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p  376 (578)
T PRK05850        298 ERVHPATLKRFADRFAPFNLRETAIRP-SYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSP  376 (578)
T ss_pred             CCCCHHHHHHHHHHHHhcCcCcccccC-ccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCC
Confidence            9999999999999874     246888 99999987554432211000                       001134555


Q ss_pred             cCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccc--------cccCCeeecCCCCC
Q 013780          371 VAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC--------EHTDSFIRGKDQQT  435 (436)
Q Consensus       371 ~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~--------~~~~~~~~tgD~~~  435 (436)
                      . +.+++|+|++++.++++|+.|||+++|+.++.|  ||++|+.+.+.|.-        -..++||+|||+|.
T Consensus       377 ~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~g--Y~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~  446 (578)
T PRK05850        377 R-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAG--YWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGF  446 (578)
T ss_pred             C-CCEEEEEcCCCCcCCCCCCEEEEEEecCccccc--ccCChhhhHHHhhcccccccccCCCCCeeeccceee
Confidence            3 579999998788999999999999999999999  99999999988721        01257999999875

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-46  Score=374.76  Aligned_cols=375  Identities=23%  Similarity=0.275  Sum_probs=295.7

Q ss_pred             hhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCC
Q 013780           34 FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY  113 (436)
Q Consensus        34 ~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~  113 (436)
                      ...++++|+++|+++..+++.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++++++.+
T Consensus         4 ~~~a~~~p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~   83 (511)
T PRK13391          4 GIHAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHL   83 (511)
T ss_pred             hhhHhhCCCceEEEecCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccccc
Confidence            35678899999999865678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCcEEEEccchHHHHhhcCC-----CcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCCC
Q 013780          114 TVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVS  188 (436)
Q Consensus       114 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (436)
                      +.+++.++++.++++.+++++...+.+.....     ...+....+        ........+.+.....+     ....
T Consensus        84 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~  150 (511)
T PRK13391         84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGD--------GELEGFVGYAEAVAGLP-----ATPI  150 (511)
T ss_pred             CHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCC--------CCCcccccHHHHhcCCC-----CCCC
Confidence            99999999999999999999876655433321     111111110        01112222333322111     1111


Q ss_pred             CCCCCeEEEEcCCCCCCCCcceeh--hhhHHHhhhh---hHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcE
Q 013780          189 VKQTDAAALLYSSGTTGVSKGVIL--THKNFIAASL---MISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (436)
Q Consensus       189 ~~~~~~a~i~~TSGtTG~pK~v~~--t~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  263 (436)
                      ....+.++++|||||||.||+|.+  +|.++.....   .....+.+  ...+++++.+|++|.+++. ..+.++..|++
T Consensus       151 ~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~h~~~~~-~~~~~~~~g~~  227 (511)
T PRK13391        151 ADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGF--RSDMVYLSPAPLYHSAPQR-AVMLVIRLGGT  227 (511)
T ss_pred             CCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCC--CCCCeEEEcCCHHHHHHHH-HHHHHHHcCce
Confidence            234467899999999999999995  4665533221   11122222  2338999999999999885 66788999999


Q ss_pred             EEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeec
Q 013780          264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV  341 (436)
Q Consensus       264 v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~  341 (436)
                      +++.+.+++..+++.++++++|++.++|+++..+.+....  ...+++++|.+++||+++++++.+++++.++ ..+++ 
T Consensus       228 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g-~~v~~-  305 (511)
T PRK13391        228 VIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWG-PIIHE-  305 (511)
T ss_pred             EEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcC-Cceee-
Confidence            9999889999999999999999999999999988765432  2345789999999999999999999999887 88999 


Q ss_pred             cccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccc
Q 013780          342 GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC  421 (436)
Q Consensus       342 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~  421 (436)
                      .||+||+++++...... ....++++|+|+++ +++|+| +++++++.|+.|||+++|+ ++.|  ||++++.+...+. 
T Consensus       306 ~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~g--y~~~~~~~~~~~~-  378 (511)
T PRK13391        306 YYAATEGLGFTACDSEE-WLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFE--YLNDPAKTAEARH-  378 (511)
T ss_pred             eeccccccceEEecCcc-ccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceE--EcCChhHhHHhhc-
Confidence            99999998765543322 14567899999999 699999 5899999999999999999 8899  9999999888762 


Q ss_pred             cccCCeeecCCCC
Q 013780          422 EHTDSFIRGKDQQ  434 (436)
Q Consensus       422 ~~~~~~~~tgD~~  434 (436)
                       ..++|++|||+|
T Consensus       379 -~~~~w~~TGD~g  390 (511)
T PRK13391        379 -PDGTWSTVGDIG  390 (511)
T ss_pred             -cCCCEEecCCEE
Confidence             125899999976

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.1e-47  Score=450.79  Aligned_cols=377  Identities=20%  Similarity=0.288  Sum_probs=314.4

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.+.|.++++++|+++|+++.  +..+||+||.++++++|+.|.+.|+++|++|+|++++++++++++||++++|+++
T Consensus      1131 ~~l~~~~~~~a~~~p~~~Al~~~--~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lailkaG~~~ 1208 (4334)
T PRK05691       1131 AWLPELLNEQARQTPERIALVWD--GGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAY 1208 (4334)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            67999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|++|.++.+++.+++++++++++|++......+..... ...+..+..              ...    ...  ...+.
T Consensus      1209 vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~--------------~~~----~~~--~~~~~ 1267 (4334)
T PRK05691       1209 VPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEG-VSAIALDSL--------------HLD----SWP--SQAPG 1267 (4334)
T ss_pred             EecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccC-ceEEeeccc--------------ccc----ccC--CCCCC
Confidence            999999999999999999999999999876554433211 111111100              000    000  11122


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++++|||||||.||||+++|+++.+.+........+..  .+++++..|++|..++. .++.+|..|+++++
T Consensus      1268 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~fd~s~~-~~~~~L~~G~~l~i 1344 (4334)
T PRK05691       1268 LHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDD--SDVLMQKAPISFDVSVW-ECFWPLITGCRLVL 1344 (4334)
T ss_pred             CCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCC--CCEEEEeCCccHHHHHH-HHHHHHhCCCEEEE
Confidence            3346789999999999999999999999999988776555555533  39999999999988885 78999999999999


Q ss_pred             cC---CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          267 MG---KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       267 ~~---~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      .+   ..++..+++.++++++|++.++|+++..|.+...  ...+++||.+++||+++++++.++|.+.++++++++ .|
T Consensus      1345 ~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~Y 1421 (4334)
T PRK05691       1345 AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHN-RY 1421 (4334)
T ss_pred             cCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEe-CC
Confidence            85   3689999999999999999999999999987543  235789999999999999999999999998899999 99


Q ss_pred             cccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccc--
Q 013780          344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC--  421 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~--  421 (436)
                      |+||++..++............++|+|+++++++|+| +++++++.|++|||+|+|+.++.|  |+++|+.|.+.|..  
T Consensus      1422 G~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~G--Yl~~p~~t~~~f~~~p 1498 (4334)
T PRK05691       1422 GPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARG--YLGRPALTAERFVPDP 1498 (4334)
T ss_pred             CcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchh--hcCCccccHhhCCCCC
Confidence            9999987665432222244567899999999999999 489999999999999999999999  99999999998821  


Q ss_pred             c--ccCCeeecCCCCC
Q 013780          422 E--HTDSFIRGKDQQT  435 (436)
Q Consensus       422 ~--~~~~~~~tgD~~~  435 (436)
                      +  ..++||+|||+|+
T Consensus      1499 ~~~~~~r~yrTGDl~~ 1514 (4334)
T PRK05691       1499 LGEDGARLYRTGDRAR 1514 (4334)
T ss_pred             CCCCCceEEEccceEE
Confidence            1  1236999999874

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.9e-47  Score=451.10  Aligned_cols=383  Identities=16%  Similarity=0.214  Sum_probs=314.2

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.++|.++++++|+++|+++.  +..+||+||.++++++|+.|.++|+++|++|+|++++++++++++||++++|+++
T Consensus      3720 ~~~~~~~~~~~~~~p~~~Av~~~--~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~ 3797 (4334)
T PRK05691       3720 QSYVRLFEAQVAAHPQRIAASCL--DQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGY 3797 (4334)
T ss_pred             cCHHHHHHHHHHhCCCceEEEcC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEE
Confidence            68999999999999999999988  7889999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      ||++|.++.+++.++++++++++++++.................             ..+.+..+++...... ......
T Consensus      3798 vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~ 3863 (4334)
T PRK05691       3798 LPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCA-------------NRPRLLVWEEVQAGEV-ASHNPG 3863 (4334)
T ss_pred             eCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccc-------------cccceeeecccccccc-cccCCC
Confidence            99999999999999999999999999986544322221000000             0000000111100000 011122


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++|+|+|||||||.||||+++|+++.+.+........+...  ++++...++++..+.+ .++.+|..|+++++
T Consensus      3864 ~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~fd~s~~-~~~~~l~~G~~l~i 3940 (4334)
T PRK05691       3864 IYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEA--DVIAQTASQSFDISVW-QFLAAPLFGARVEI 3940 (4334)
T ss_pred             CCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCcc--ceEEEecCCchhHHHH-HHHHHHhCCCEEEE
Confidence            34567899999999999999999999999999988776666555433  9999999999999886 78999999999999


Q ss_pred             cCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       267 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      .+.   .++..+++.++++++|++.++|+++..+++..   ...+++||.+++||+++++++.++|.+.++++++++ .|
T Consensus      3941 ~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~Y 4016 (4334)
T PRK05691       3941 VPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVN-AY 4016 (4334)
T ss_pred             cCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEe-Cc
Confidence            853   57899999999999999999999999887643   235789999999999999999999999988899999 99


Q ss_pred             cccccCCcccccCCCCC--ccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc-
Q 013780          344 GMTETCAPISLENPLVG--VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG-  420 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~-  420 (436)
                      |.||++..++.......  .....++|+|++++++.|+| +.++++|.|.+|||+|+|+.++.|  |+++|+.|.++|- 
T Consensus      4017 G~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~G--Y~~~~~~t~~~f~~ 4093 (4334)
T PRK05691       4017 GPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRG--YVGDPLRTALAFVP 4093 (4334)
T ss_pred             cCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEeccccccc--ccCCcccchhhccc
Confidence            99999876654322211  22345799999999999999 589999999999999999999999  9999999999982 


Q ss_pred             -cc--ccCCeeecCCCCC
Q 013780          421 -CE--HTDSFIRGKDQQT  435 (436)
Q Consensus       421 -~~--~~~~~~~tgD~~~  435 (436)
                       .+  ..++||+|||+++
T Consensus      4094 ~p~~~~~~~~yrTGDl~~ 4111 (4334)
T PRK05691       4094 HPFGAPGERLYRTGDLAR 4111 (4334)
T ss_pred             CCCCCCCceeeccCccee
Confidence             12  2357999999985

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=9.2e-47  Score=365.54  Aligned_cols=352  Identities=23%  Similarity=0.323  Sum_probs=288.8

Q ss_pred             cHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEcc
Q 013780           56 SFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP  134 (436)
Q Consensus        56 Ty~el~~~~~~la~~L~~-~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~  134 (436)
                      ||.||.+.+.++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++++++.++.+++.++++.++++++++++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhh
Q 013780          135 ELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH  214 (436)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~  214 (436)
                      .....+.............                 .......... ..........+++++++|||||||.||+|.+||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~  142 (408)
T TIGR01733        81 ALASRLAGLVLPIILVDPL-----------------ELAALDDAPA-PPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTH  142 (408)
T ss_pred             chhhhccccCCceEEechh-----------------hhhhcccccc-cccccCCCCCCCcEEEEEcCCCCCCCCEEEecc
Confidence            8766655443222222110                 0000000000 111111145788999999999999999999999


Q ss_pred             hHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCC---HHHHHHHHHHhcceEEEecH
Q 013780          215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD---IEMALRAIEKYRVTVWWVVP  291 (436)
Q Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~---~~~~~~~l~~~~~t~l~~~p  291 (436)
                      +++..++..+.....+.  ..+++++..|++|.+++. .++.++..|+++++.+...   +..+.+.++++++|.+.++|
T Consensus       143 ~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~-~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p  219 (408)
T TIGR01733       143 RSLVNLLAWLARRYGLD--PDDRVLQFASLSFDASVE-EIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTP  219 (408)
T ss_pred             HHHHHHHHHHHHhcCCC--CCceEEEecCCccchhHH-HHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCH
Confidence            99999888776655443  339999999999999885 7899999999999986543   68899999999999999999


Q ss_pred             HHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCC-Ccc--CcCccc
Q 013780          292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLV-GVR--RSGSAG  368 (436)
Q Consensus       292 ~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~-~~~--~~~~~G  368 (436)
                      .+++.|.+...   ..+++||.+++||+++++++.+++++.++++.+++ .||+||+++++....... ...  ++.++|
T Consensus       220 ~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~-~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G  295 (408)
T TIGR01733       220 SLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLIN-LYGPTETTVWSTATLVDADDAPRESPVPIG  295 (408)
T ss_pred             HHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEe-cccCCceEEEEEEEEcCccccCCccccccC
Confidence            99999988765   46789999999999999999999999998799999 999999988775322111 111  378899


Q ss_pred             cccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhc--cccc-cCC--eeecCCCCC
Q 013780          369 TLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW--GCEH-TDS--FIRGKDQQT  435 (436)
Q Consensus       369 ~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~--~~~~-~~~--~~~tgD~~~  435 (436)
                      .|+++++++|+|+ +++.+++|+.|||+++|++++.|  |+++++.+.+.|  ..+. .++  ||+|||++.
T Consensus       296 ~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~  364 (408)
T TIGR01733       296 RPLANTRLYVLDD-DLRPVPVGVVGELYIGGPGVARG--YLNRPELTAERFVPDPFAGGDGARLYRTGDLVR  364 (408)
T ss_pred             cccCCceEEEECC-CCCCCCCCCceEEEecCcccccc--ccCChhhhhcceeeCCCCCCCCceEEECCceEE
Confidence            9999999999997 59999999999999999999999  999999998887  2122 233  999999874

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.5e-46  Score=371.64  Aligned_cols=389  Identities=20%  Similarity=0.238  Sum_probs=303.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      +|+.++|.+.++++|+++|+++.  ++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         3 ~~l~~~~~~~a~~~p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~   80 (533)
T PRK07798          3 WNIADLFEAVADAVPDRVALVCG--DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP   80 (533)
T ss_pred             ccHHHHHHHHHHhCCCceEEEEC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEE
Confidence            68999999999999999999986  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC-----CcEEeccCCccccccccccCcccchhhHHhhhcCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (436)
                      +++++.++.+++.++++.+++++++++....+.+.+...     +.++...+...     .....+..++++++....  
T Consensus        81 v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--  153 (533)
T PRK07798         81 VNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSG-----NDLLPGAVDYEDALAAGS--  153 (533)
T ss_pred             EecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcc-----cccCCccccHHHHHhccC--
Confidence            999999999999999999999999999877666554421     11222211110     011112445666655433  


Q ss_pred             CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhh------hcc-------CCCCcEEEechhHHHHH
Q 013780          182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ------ELV-------GELDHVVLCVLPMFHVF  248 (436)
Q Consensus       182 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~------~~~-------~~~~~~~~~~~p~~~~~  248 (436)
                      ....... ...+.++++|||||||.||+|+++|.++...........      ...       ...+++++..+|++|..
T Consensus       154 ~~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~  232 (533)
T PRK07798        154 PERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGA  232 (533)
T ss_pred             CcCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhh
Confidence            1111112 233457899999999999999999999876544322111      000       01238899999999999


Q ss_pred             HHHHHHHhhccCCcEEEEcC--CCCHHHHHHHHHHhcceEEEecHHHHHH-HHhccc-cCccCCCcceEEEecCCCCcHH
Q 013780          249 GLSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILA-LAKNSL-VRKFDISSLKLVGSGAAPLGKE  324 (436)
Q Consensus       249 g~~~~~~~~l~~G~~v~~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~-l~~~~~-~~~~~l~~lr~i~~gg~~l~~~  324 (436)
                      +++ .++.++..|+++++.+  .+++..+++.++++++|++.++|..+.. +.+... ....+++++|.+++||++++++
T Consensus       233 ~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~  311 (533)
T PRK07798        233 GQW-AAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPS  311 (533)
T ss_pred             hHH-HHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHH
Confidence            997 7889999999999998  8899999999999999999999876532 333322 2345678999999999999999


Q ss_pred             HHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccc--cccCCcEEEEEeCCCCccCCCCCc--eEEEEecC
Q 013780          325 LMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAG--TLVAGVEAQIVSVDTLKPLPPNQL--GEIWVRGP  400 (436)
Q Consensus       325 ~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G--~p~~~~~v~i~d~~~~~~~~~g~~--Gel~v~g~  400 (436)
                      +.+++++.+++..+++ .||+||++.+.......    .....|  .+.++..++|+|+ ++.++++|+.  |+++ +++
T Consensus       312 ~~~~~~~~~~~~~~~~-~YG~tE~~~~~~~~~~~----~~~~~g~~~~~~~~~~~i~~~-~~~~~~~g~~~~g~l~-~~~  384 (533)
T PRK07798        312 VKEALLELLPNVVLTD-SIGSSETGFGGSGTVAK----GAVHTGGPRFTIGPRTVVLDE-DGNPVEPGSGEIGWIA-RRG  384 (533)
T ss_pred             HHHHHHHHcCCCeEEe-eecccccccccccCCCC----CCccCCCCccCCCceEEEECC-CCCCCCCCCCCeeEEE-eec
Confidence            9999999997799999 99999986554433211    122334  7889999999995 7889999887  6665 566


Q ss_pred             CcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          401 NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       401 ~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .++.|  ||++++.+.+.|...+.++|++|||+++
T Consensus       385 ~~~~g--y~~~~~~t~~~f~~~~~~~~~~TGD~~~  417 (533)
T PRK07798        385 HIPLG--YYKDPEKTAETFPTIDGVRYAIPGDRAR  417 (533)
T ss_pred             Ccccc--ccCChhhhHHhhccCCCCceEEcCcEEE
Confidence            89999  9999999998885445567999999763

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-45  Score=371.25  Aligned_cols=389  Identities=21%  Similarity=0.284  Sum_probs=299.9

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      +++.+.|.+.++.+|+++|+.+.  +..+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~   95 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG--DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVL   95 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEE
Confidence            78999999999999999999886  6889999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CC-cEEeccCCccccccccccCcccchhhHHhhhcCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LP-AVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV  181 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (436)
                      +|+++.++.+++.++++.++++.+++++...+.+....    .. ..++......  .. .....+..++..+.....  
T Consensus        96 vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~--  170 (545)
T PRK08162         96 NTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPE--YP-GGRFIGALDYEAFLASGD--  170 (545)
T ss_pred             eccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccc--cc-cCCCcccccHHHHhccCC--
Confidence            99999999999999999999999999988766554321    11 2222211100  00 001112234555544322  


Q ss_pred             CCCC-CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780          182 TDIP-DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (436)
Q Consensus       182 ~~~~-~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  260 (436)
                      .... .......+.++++|||||||.||+|+++|+++..++......+.+.  .++++++.+|++|.+++...++..+. 
T Consensus       171 ~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~--~~~~~l~~~pl~h~~~~~~~~~~~~~-  247 (545)
T PRK08162        171 PDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMP--KHPVYLWTLPMFHCNGWCFPWTVAAR-  247 (545)
T ss_pred             ccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCC--CCCeeEeccCcHhhhhHHHHHHHHHH-
Confidence            1111 1122456789999999999999999999998877655443434332  33899999999999998644454554 


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (436)
Q Consensus       261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~  340 (436)
                      |++.++..++++..+++.|+++++|++.++|+++..|++........+.+++.++++|+++++++.+.+++.  +.++++
T Consensus       248 ~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~  325 (545)
T PRK08162        248 AGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTH  325 (545)
T ss_pred             ccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceee
Confidence            555555567899999999999999999999999999998765444455667778899999999999999875  499999


Q ss_pred             ccccccccCCcccccCCCC---------CccCcCccccccCC-cEEEEEeCCCCccCCC-C-CceEEEEecCCcccCccc
Q 013780          341 VGYGMTETCAPISLENPLV---------GVRRSGSAGTLVAG-VEAQIVSVDTLKPLPP-N-QLGEIWVRGPNVTPGIVY  408 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~---------~~~~~~~~G~p~~~-~~v~i~d~~~~~~~~~-g-~~Gel~v~g~~~~~g~~Y  408 (436)
                       .||+||+++.+.......         ......++|.+.+. ..++|+|++++.+++. | +.|||+++|+.++.|  |
T Consensus       326 -~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~g--Y  402 (545)
T PRK08162        326 -VYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKG--Y  402 (545)
T ss_pred             -cccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhh--h
Confidence             999999865444321110         01123556776653 4688999778888876 3 469999999999999  9


Q ss_pred             cCChhhhhhhccccccCCeeecCCCC
Q 013780          409 INFFVFTLFLWGCEHTDSFIRGKDQQ  434 (436)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~tgD~~  434 (436)
                      +++++.+...|    .++||+|||+|
T Consensus       403 ~~~~~~~~~~~----~~g~~~TGDl~  424 (545)
T PRK08162        403 LKNPKATEEAF----AGGWFHTGDLA  424 (545)
T ss_pred             cCChhhhHHHh----hCCCcccCceE
Confidence            99999999988    57899999986

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-46  Score=379.90  Aligned_cols=386  Identities=21%  Similarity=0.250  Sum_probs=296.8

Q ss_pred             cCCCCCCCchHHHHhhhcccCCCceEEEeCCC-CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHH
Q 013780           20 VLPSDPSFSMVHFLFRNSASYSSKLALIDADS-DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG   98 (436)
Q Consensus        20 ~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~-~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA   98 (436)
                      .++..  .|+.+.|...++++|+..++....+ .+.+||.||+.++.++|+.|.++|+++||+|+++++|+++++++++|
T Consensus        16 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA   93 (579)
T PRK09192         16 RYADF--PTLVEALDYAALGEAGMNFYDRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFA   93 (579)
T ss_pred             cccch--hhHHHHHHHhhccCCceEEEecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHH
Confidence            44555  7899999999999987766533211 16799999999999999999999999999999999999999999999


Q ss_pred             HHHhCCeEeecCCCCC-------HHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchh
Q 013780           99 VIAIGAIASTANPVYT-------VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF  171 (436)
Q Consensus        99 ~~~~G~~~v~l~~~~~-------~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (436)
                      |+++|++++++++..+       .+++.++++.++++++++++...+.+........                ......+
T Consensus        94 ~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~----------------~~~~~~~  157 (579)
T PRK09192         94 CQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP----------------LLHVLSH  157 (579)
T ss_pred             HHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc----------------ccceeeh
Confidence            9999999999987543       5899999999999999999876655544310000                0001122


Q ss_pred             hHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHh-hhhccCCCCcEEEechhHHHHHHH
Q 013780          172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA-HQELVGELDHVVLCVLPMFHVFGL  250 (436)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~g~  250 (436)
                      .++.....  .........++++++++|||||||.||+|.++|+++..+...... ...+.  .++++++.+|++|.+++
T Consensus       158 ~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~--~~d~~l~~~p~~h~~g~  233 (579)
T PRK09192        158 AWFKALPE--ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVR--PGDRCVSWLPFYHDMGL  233 (579)
T ss_pred             hhhcccCC--CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCC--CCCeEEEeCCCCCcchh
Confidence            22222211  111222346789999999999999999999999999987765544 33333  33999999999999999


Q ss_pred             HHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhccc---cCccCCCcceEEEecCCCCcH
Q 013780          251 SVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL---VRKFDISSLKLVGSGAAPLGK  323 (436)
Q Consensus       251 ~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~---~~~~~l~~lr~i~~gg~~l~~  323 (436)
                      ...++.++..|+++++.+.    .++..+++.+.++++++++..|..+..+.....   ....+++++|.+++||+++++
T Consensus       234 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~  313 (579)
T PRK09192        234 VGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRP  313 (579)
T ss_pred             HHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCH
Confidence            8778888999999977752    268899999999999988776665555543321   233568899999999999999


Q ss_pred             HHHHHHHhhCCC-----CeeeeccccccccCCcccccCCCCC--------------------------ccCcCccccccC
Q 013780          324 ELMEDCQKNIPG-----ATIFQVGYGMTETCAPISLENPLVG--------------------------VRRSGSAGTLVA  372 (436)
Q Consensus       324 ~~~~~~~~~~~~-----~~i~~~~YG~tE~~~~~~~~~~~~~--------------------------~~~~~~~G~p~~  372 (436)
                      ++.+++.+.++.     ..+++ .||+||+++.++.......                          .....++|+|+|
T Consensus       314 ~~~~~~~~~~~~~g~~~~~~~~-~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p  392 (579)
T PRK09192        314 DVLHQFAEAFAPAGFDDKAFMP-SYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALP  392 (579)
T ss_pred             HHHHHHHHHHHhcCCChhhccc-ccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCC
Confidence            999999998742     34788 9999999766554332110                          011357899999


Q ss_pred             CcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          373 GVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       373 ~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +++++|+|+ ++..++.|+.|||+++|+.++.|  ||++ +.+.+.+   ..++||+|||+|.
T Consensus       393 ~~~v~i~d~-~~~~~~~g~~Gel~i~g~~~~~g--Y~~~-~~~~~~~---~~dgw~~TGDlg~  448 (579)
T PRK09192        393 GHEIEIRNE-AGMPLPERVVGHICVRGPSLMSG--YFRD-EESQDVL---AADGWLDTGDLGY  448 (579)
T ss_pred             CcEEEEECC-CCCCCCCCCEEEEEecCCchhhh--hcCC-ccccccc---cCCceeeccceee
Confidence            999999994 78999999999999999999999  9999 5555444   3678999999874

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=7e-46  Score=402.07  Aligned_cols=381  Identities=22%  Similarity=0.335  Sum_probs=297.5

Q ss_pred             CchHHHHhhhcccCC-CceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           27 FSMVHFLFRNSASYS-SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p-~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      .++.+.|.+.++++| ++.++.+. +++.+||+||.++++++|+.|.+ |+++||+|+++++|+++++++++||+++|++
T Consensus       631 ~~~~~~l~~~~~~~~~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v  708 (1140)
T PRK06814        631 RTLFEALIEAAKIHGFKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV  708 (1140)
T ss_pred             CCHHHHHHHHHHHcCCCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCCCE
Confidence            678888988888886 56666653 36899999999999999999976 9999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHh------hcCCCcEEeccCCccccccccccCcccchhhHHhhhcC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK------DLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (436)
                      ++++||..+.+++.+++++++++++++++...+...      .......++..++..      ........+.+......
T Consensus       709 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~  782 (1140)
T PRK06814        709 PAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVR------AQIGLADKIKGLLAGRF  782 (1140)
T ss_pred             EEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhh------ccCChHHHHHHHhhccC
Confidence            999999999999999999999999999876544321      111111122111100      00000111111111111


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhcc
Q 013780          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (436)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~  259 (436)
                        +........++++++++|||||||.||+|.++|+++..+.........+..  +|++++.+|++|.+++...++.++.
T Consensus       783 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~--~d~~l~~~pl~h~~g~~~~~~~~l~  858 (1140)
T PRK06814        783 --PLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSP--EDKVFNALPVFHSFGLTGGLVLPLL  858 (1140)
T ss_pred             --CccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCC--cCEEEEecchHHHHHHHHHHHHHHH
Confidence              111111346789999999999999999999999999888776655555433  3999999999999999767889999


Q ss_pred             CCcEEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCee
Q 013780          260 KGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (436)
Q Consensus       260 ~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i  338 (436)
                      .|+++++.+ +.+...+.+.++++++|++.++|+++..+.+..  ...+++++|.+++||+++++++.+.+.+.++ .++
T Consensus       859 ~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~-~~~  935 (1140)
T PRK06814        859 SGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKFG-IRI  935 (1140)
T ss_pred             cCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHhC-CcE
Confidence            999999885 457788899999999999999999999887763  3356789999999999999999999999996 899


Q ss_pred             eeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhh
Q 013780          339 FQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFL  418 (436)
Q Consensus       339 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~  418 (436)
                      ++ .||+||++..+....+.  ..+.+++|+|+|++++++.+. .+    .++.|||+++|++++.|  |+++++.....
T Consensus       936 ~~-~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~g~~~~~~~~-~~----~~~~Gel~v~g~~~~~g--Y~~~~~~~~~~ 1005 (1140)
T PRK06814        936 LE-GYGVTETAPVIALNTPM--HNKAGTVGRLLPGIEYRLEPV-PG----IDEGGRLFVRGPNVMLG--YLRAENPGVLE 1005 (1140)
T ss_pred             Ee-ccccccccceEEecCCC--CCCCCcCCccCCCCeEEEeec-CC----CCCceEEEEeCCCcchh--hcCCCCCCccc
Confidence            99 99999998776654433  456789999999999999874 32    36789999999999999  99876533211


Q ss_pred             ccccccCCeeecCCCCC
Q 013780          419 WGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       419 ~~~~~~~~~~~tgD~~~  435 (436)
                      .   ..+|||+|||+|+
T Consensus      1006 ~---~~~g~~~TGDl~~ 1019 (1140)
T PRK06814       1006 P---PADGWYDTGDIVT 1019 (1140)
T ss_pred             c---CCCCeEecCCEEE
Confidence            1   1478999999864

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-45  Score=340.20  Aligned_cols=393  Identities=20%  Similarity=0.211  Sum_probs=311.8

Q ss_pred             CCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHh
Q 013780           23 SDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI  102 (436)
Q Consensus        23 ~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~  102 (436)
                      .+++.|+.+.+.++++++|+|+|+++.+.+..+||+|+..++.++|+.|...|++.||.|++.|+|.++|+.++|+++++
T Consensus        73 rr~~~ti~~~F~~~vrr~p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKl  152 (649)
T KOG1179|consen   73 RRERRTIAELFLSQVRRQPDKPAIIYEGPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKL  152 (649)
T ss_pred             hccCCcHHHHHHHHHHhCCCccEEEEeCCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhh
Confidence            44568999999999999999999999976789999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC----CcEEeccCCccccccccccCcccchhhHHhhhc
Q 013780          103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS  178 (436)
Q Consensus       103 G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (436)
                      |++...||++...+-+.|.++.++++++|++.+..+.+.+...    .-+-....+.      ....++..++...++..
T Consensus       153 Gv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~------~~~~~g~~~L~~~l~~~  226 (649)
T KOG1179|consen  153 GVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGP------TSVPDGIESLLAKLSAA  226 (649)
T ss_pred             CceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCC------CCCCchHHHHHHhhccc
Confidence            9999999999999999999999999999999998877766621    1111111100      02233334444444443


Q ss_pred             CCCCC--CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHh
Q 013780          179 GSVTD--IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD  256 (436)
Q Consensus       179 ~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~  256 (436)
                      ...+.  .........++++.+|||||||.||+.++||..+...+..+.....+...  |+++..+|++|.+|.+..+..
T Consensus       227 ~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~--DvvY~~lPLYHsaa~ilGi~~  304 (649)
T KOG1179|consen  227 PKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTAD--DVVYTTLPLYHSAAGILGIGG  304 (649)
T ss_pred             ccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCcc--ceEEEcchhHHHHHHHHHHHH
Confidence            32111  22345567789999999999999999999999998877765566555444  999999999999999999999


Q ss_pred             hccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCC
Q 013780          257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGA  336 (436)
Q Consensus       257 ~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~  336 (436)
                      ++..|+|+++-.+|+...+|+.+.+++||++.-.-.+.+.|...+......-+++|..+--|  +.++.++.|.++|+..
T Consensus       305 ~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GNG--LR~diW~~Fv~RFg~~  382 (649)
T KOG1179|consen  305 CLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGNG--LRPDIWQQFVKRFGII  382 (649)
T ss_pred             HHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecCC--CCchHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999988887788999886554  8899999999999988


Q ss_pred             eeeeccccccccCCcccccCCCCCccCcCcccc------ccCCcEEEEEeCCCCcc----------CCCCCceEEEEec-
Q 013780          337 TIFQVGYGMTETCAPISLENPLVGVRRSGSAGT------LVAGVEAQIVSVDTLKP----------LPPNQLGEIWVRG-  399 (436)
Q Consensus       337 ~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~------p~~~~~v~i~d~~~~~~----------~~~g~~Gel~v~g-  399 (436)
                      +|.+ .||+||........     +...+.+|+      -+--+++-=+|++++++          |++||+|.++-+= 
T Consensus       383 ~IgE-~YgaTEgn~~~~N~-----d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~  456 (649)
T KOG1179|consen  383 KIGE-FYGATEGNSNLVNY-----DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIV  456 (649)
T ss_pred             eEEE-EeccccCcceeeee-----cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEec
Confidence            8999 99999976544433     233344443      11223333345566654          7899999764332 


Q ss_pred             -CCc---ccCccccCChhhhhhhc---cccccCCeeecCCC
Q 013780          400 -PNV---TPGIVYINFFVFTLFLW---GCEHTDSFIRGKDQ  433 (436)
Q Consensus       400 -~~~---~~g~~Y~~~~~~~~~~~---~~~~~~~~~~tgD~  433 (436)
                       -..   +.|  |.++.+.+++..   .+-+.|-||.|||+
T Consensus       457 ~k~P~~~F~G--Y~g~~~~t~kKl~rDVFkkGD~~f~tGDl  495 (649)
T KOG1179|consen  457 QKNPLRSFLG--YAGPKKATEKKLLRDVFKKGDVYFNTGDL  495 (649)
T ss_pred             cCCchhhhcc--ccCchhhhhhhhHHhhhccCcEEEeeCcE
Confidence             233   889  999888887766   33333557888885

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.9e-46  Score=372.46  Aligned_cols=377  Identities=22%  Similarity=0.283  Sum_probs=296.6

Q ss_pred             chHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEe
Q 013780           28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (436)
Q Consensus        28 ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v  107 (436)
                      ++.+.|...++.+|+.+++.+.+.+..+||.||+++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~   82 (545)
T PRK07768          3 RFTEKMYANARTSPRGMVTGEPDAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLT   82 (545)
T ss_pred             hHHHHHHHHhhCCCcceEEecCCCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcccc
Confidence            48888999999999999998887778999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCHHH-------HHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCC
Q 013780          108 TANPVYTVSE-------LSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (436)
Q Consensus       108 ~l~~~~~~~~-------~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (436)
                      ++++..+.++       ..++++.++++.+++++.....+......                  ......++++..... 
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~-  143 (545)
T PRK07768         83 MLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEK------------------GIRVLTVADLLAADP-  143 (545)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhccc------------------CCceeehhhhcccCC-
Confidence            9998877543       45567888999999987654433322110                  011223444433221 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  260 (436)
                       .  ......++++++++|||||||.||+|+++|+++..++........+.. ..|++++.+|++|.+++...++.++..
T Consensus       144 -~--~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~-~~d~~~~~~p~~~~~g~~~~~~~~l~~  219 (545)
T PRK07768        144 -I--DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDV-ETDVMVSWLPLFHDMGMVGFLTVPMYF  219 (545)
T ss_pred             -C--CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCC-CCceeEEeCCCccchHHHHHHHHHHHC
Confidence             1  223446789999999999999999999999999887766555544321 127999999999999998677888999


Q ss_pred             CcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhcc----ccCccCCCcceEEEecCCCCcHHHHHHHHhh
Q 013780          261 GNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNS----LVRKFDISSLKLVGSGAAPLGKELMEDCQKN  332 (436)
Q Consensus       261 G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~----~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~  332 (436)
                      |+++++.++    .++..+++.+++++++++.++|.++..+.+..    .....++++||.++++|+++++++.+++.+.
T Consensus       220 g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~  299 (545)
T PRK07768        220 GAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDA  299 (545)
T ss_pred             CceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHH
Confidence            999988754    26788899999999999988888776665432    1123567899999999999999999999874


Q ss_pred             ---CC--CCeeeeccccccccCCcccccCCCC------------------------CccCcCccccccCCcEEEEEeCCC
Q 013780          333 ---IP--GATIFQVGYGMTETCAPISLENPLV------------------------GVRRSGSAGTLVAGVEAQIVSVDT  383 (436)
Q Consensus       333 ---~~--~~~i~~~~YG~tE~~~~~~~~~~~~------------------------~~~~~~~~G~p~~~~~v~i~d~~~  383 (436)
                         ++  ...+++ .||+||++..+.......                        ...++.++|+|+++++++|+| ++
T Consensus       300 ~~~~g~~~~~~~~-~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~  377 (545)
T PRK07768        300 GARFGLRPEAILP-AYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-ED  377 (545)
T ss_pred             HHhcCCCcccccc-cccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CC
Confidence               44  235888 999999987554332210                        012456899999999999999 58


Q ss_pred             CccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          384 LKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       384 ~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ++++++|+.|||+++|+.++.|  |++++.......    .++||+|||+++
T Consensus       378 ~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~----~~g~~~TGDl~~  423 (545)
T PRK07768        378 GQVLPPRGVGVIELRGESVTPG--YLTMDGFIPAQD----ADGWLDTGDLGY  423 (545)
T ss_pred             CCCCCCCCEEEEEEccCccccc--ccCCCCCccccc----CCCeeeccceEE
Confidence            8999999999999999999999  998655443332    568999999763

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.7e-45  Score=366.68  Aligned_cols=371  Identities=23%  Similarity=0.286  Sum_probs=288.6

Q ss_pred             EEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHh
Q 013780           45 ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD  124 (436)
Q Consensus        45 a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~  124 (436)
                      |++..  ++.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++++++|.++.+++.++++.
T Consensus         4 ~~~~~--~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~   81 (509)
T PRK12406          4 TIISG--DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILED   81 (509)
T ss_pred             EEEEC--CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhc
Confidence            55555  6899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEccchHHHHhhcCCC-cEEeccCCccc-c------ccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEE
Q 013780          125 SNPKLVITVPELWDKVKDLNLP-AVLLGSKDKVS-S------SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA  196 (436)
Q Consensus       125 ~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (436)
                      +++++++++....+.+...... ..++....... .      ............+++......     .......+++++
T Consensus        82 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~  156 (509)
T PRK12406         82 SGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE-----PYDGPPVPQPQS  156 (509)
T ss_pred             cCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccC-----ccCCCCCCCceE
Confidence            9999999988766655332211 11111110000 0      000011122334444432211     112335679999


Q ss_pred             EEcCCCCCCCCcceehhhhHH---HhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHH
Q 013780          197 LLYSSGTTGVSKGVILTHKNF---IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIE  273 (436)
Q Consensus       197 i~~TSGtTG~pK~v~~t~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~  273 (436)
                      ++|||||||.||+|.++|...   ............+  ..++++++..|++|..+.. ..+.++..|+++++.+.+++.
T Consensus       157 i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~  233 (509)
T PRK12406        157 MIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGL--KPGIRALLTGPLYHSAPNA-YGLRAGRLGGVLVLQPRFDPE  233 (509)
T ss_pred             EEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCC--CCCceEEEEeCCcccchHH-HHHHHHhhheEEEEccCCCHH
Confidence            999999999999999866543   3322222223333  2338999999999988875 455678889999998888999


Q ss_pred             HHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCc
Q 013780          274 MALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAP  351 (436)
Q Consensus       274 ~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~  351 (436)
                      .+++.++++++|++.++|+++..|++....  ...+++++|.+++||+++++++.+++.+.++ ..+++ .||+||++.+
T Consensus       234 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~-~~~~~-~YG~tE~~~~  311 (509)
T PRK12406        234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG-PVIYE-YYGSTESGAV  311 (509)
T ss_pred             HHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcC-CcEEe-eccccccCce
Confidence            999999999999999999999999875432  3346789999999999999999999999987 88999 9999999876


Q ss_pred             ccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCccc-CccccCChhhhhhhccccccCCeeec
Q 013780          352 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP-GIVYINFFVFTLFLWGCEHTDSFIRG  430 (436)
Q Consensus       352 ~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~-g~~Y~~~~~~~~~~~~~~~~~~~~~t  430 (436)
                      ++....+ ...+++++|+|+++++++|+|+ ++++++.|+.|||+++|+.++. |  |+++++.+...+    .++|++|
T Consensus       312 ~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~~~--y~~~~~~~~~~~----~~~~~~T  383 (509)
T PRK12406        312 TFATSED-ALSHPGTVGKAAPGAELRFVDE-DGRPLPQGEIGEIYSRIAGNPDFT--YHNKPEKRAEID----RGGFITS  383 (509)
T ss_pred             EecCccc-ccccCCCcCccCCCcEEEEECC-CCCCCCCCCceEEEEECCcccccc--ccCCchhccccc----CCCCeEE
Confidence            6544322 2456789999999999999995 7899999999999999998775 8  999998887765    5789999


Q ss_pred             CCCCC
Q 013780          431 KDQQT  435 (436)
Q Consensus       431 gD~~~  435 (436)
                      ||++.
T Consensus       384 GD~~~  388 (509)
T PRK12406        384 GDVGY  388 (509)
T ss_pred             ccEEE
Confidence            99763

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3e-45  Score=364.33  Aligned_cols=365  Identities=26%  Similarity=0.320  Sum_probs=290.7

Q ss_pred             EEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHh
Q 013780           45 ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKD  124 (436)
Q Consensus        45 a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~  124 (436)
                      |++-...+..+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++.++++.
T Consensus         2 ~~~~~~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~   81 (502)
T PRK08276          2 AVIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDD   81 (502)
T ss_pred             ceEecCCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhc
Confidence            34434447999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcEEEEccchHHHHhhcC------CCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEE
Q 013780          125 SNPKLVITVPELWDKVKDLN------LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALL  198 (436)
Q Consensus       125 ~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~  198 (436)
                      ++++++++++.....+....      .+.+.+...          .......+++......     .......++.++++
T Consensus        82 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~  146 (502)
T PRK08276         82 SGAKVLIVSAALADTAAELAAELPAGVPLLLVVAG----------PVPGFRSYEEALAAQP-----DTPIADETAGADML  146 (502)
T ss_pred             CCCCEEEEccchhhHHHHHhhhccccccEEEEeCC----------CCCccccHHHHHhcCC-----CCCCCCCCcceEEE
Confidence            99999999987666554321      122222111          1122233444433221     11123456789999


Q ss_pred             cCCCCCCCCcceehhhhHHHhhhh--hHHhh--hhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHH
Q 013780          199 YSSGTTGVSKGVILTHKNFIAASL--MISAH--QELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM  274 (436)
Q Consensus       199 ~TSGtTG~pK~v~~t~~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~  274 (436)
                      |||||||.||+|.++|.++.....  .....  .......++++++..|++|.+++. ..+.++..|+++++.+.+++..
T Consensus       147 ~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~  225 (502)
T PRK08276        147 YSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLR-FGMSALALGGTVVVMEKFDAEE  225 (502)
T ss_pred             ECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHH-HHHHHHhccceEEEcCCCCHHH
Confidence            999999999999999877654321  11011  111112348999999999999986 5567899999999998899999


Q ss_pred             HHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcc
Q 013780          275 ALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPI  352 (436)
Q Consensus       275 ~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~  352 (436)
                      +++.++++++|++.++|+++..+.+....  ...+++++|.+++||++++.++.+++.+.++ ..+++ .||+||+++++
T Consensus       226 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~-~~~~~-~yG~tE~~~~~  303 (502)
T PRK08276        226 ALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG-PIIHE-YYASSEGGGVT  303 (502)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC-cHhhh-hccccccccee
Confidence            99999999999999999999999876543  3346889999999999999999999999987 88899 99999998866


Q ss_pred             cccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCC
Q 013780          353 SLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKD  432 (436)
Q Consensus       353 ~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD  432 (436)
                      +..... .....+++|+|+ +++++|+|+ ++.+++.|+.|||+++|+.++.|  |+++++.+...+   ..++|++|||
T Consensus       304 ~~~~~~-~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~g--y~~~~~~~~~~~---~~~~~~~TGD  375 (502)
T PRK08276        304 VITSED-WLAHPGSVGKAV-LGEVRILDE-DGNELPPGEIGTVYFEMDGYPFE--YHNDPEKTAAAR---NPHGWVTVGD  375 (502)
T ss_pred             EecCcc-ccccCCCcceec-ccEEEEECC-CCCCCcCCCceEEEEECCCccch--hcCCHHHHHHHh---cCCCceeecc
Confidence            554332 135567899999 889999994 78999999999999999999999  999999988877   2458999999


Q ss_pred             CCC
Q 013780          433 QQT  435 (436)
Q Consensus       433 ~~~  435 (436)
                      +++
T Consensus       376 ~~~  378 (502)
T PRK08276        376 VGY  378 (502)
T ss_pred             eEE
Confidence            873

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-45  Score=385.42  Aligned_cols=387  Identities=14%  Similarity=0.166  Sum_probs=286.5

Q ss_pred             CCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 013780           24 DPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (436)
Q Consensus        24 ~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G  103 (436)
                      ..++|+.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|.++|+++||+|+|+++|+++++++++||+++|
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aG  521 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD--GRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLG  521 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC--CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence            45589999999999999999999986  6899999999999999999999999999999999999999999999999999


Q ss_pred             CeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCC
Q 013780          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD  183 (436)
Q Consensus       104 ~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (436)
                      ++++|++|.   +++.++++.++++++|+++...+.+.....+.+++ ..... .............+++........+.
T Consensus       522 av~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (994)
T PRK07868        522 AVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVL-GGGES-RDLDLPDDADVIDMEKIDPDAVELPG  596 (994)
T ss_pred             CEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEe-cCCcc-ccccCCcchhhhhhhhcCcccccCCc
Confidence            999999985   67899999999999999987776655433232222 11100 00000000011112111110000000


Q ss_pred             -CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCc
Q 013780          184 -IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN  262 (436)
Q Consensus       184 -~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~  262 (436)
                       .......++++++|+|| ||||.||++.++|.+.............+  ..+|++++.+|++|.+++...++.++..|+
T Consensus       597 ~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l--~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~  673 (994)
T PRK07868        597 WYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAAL--DRRDTVYCLTPLHHESGLLVSLGGAVVGGS  673 (994)
T ss_pred             ccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCC--CCCCeEEEecChHHHhHHHHHHHHHhccce
Confidence             01112236889999998 57777777777877665443332233333  234999999999999999766777888888


Q ss_pred             EEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780          263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG  342 (436)
Q Consensus       263 ~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~  342 (436)
                      ++++.+.+++..+++.|+++++|+++++|+++..|.+.......++++||.++.  +.+++++.+++.+.|++.++++ .
T Consensus       674 ~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~g--~gl~~~l~~~~~~~~~~~~l~~-~  750 (994)
T PRK07868        674 RIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIG--SGMPTGLWERVVEAFAPAHVVE-F  750 (994)
T ss_pred             EEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEec--CCCCHHHHHHHHHHhCchheee-e
Confidence            888888899999999999999999999999999998875544456789998763  3499999999999998789999 9


Q ss_pred             ccccccCCcccccCCCCCccCcCccccccCCc-EEEEE--eC--------CCC--ccCCCCCceEEEEecCCcccCcccc
Q 013780          343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGV-EAQIV--SV--------DTL--KPLPPNQLGEIWVRGPNVTPGIVYI  409 (436)
Q Consensus       343 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~-~v~i~--d~--------~~~--~~~~~g~~Gel~v~g~~~~~g~~Y~  409 (436)
                      ||+||++.... .. .  ..+++++|+|+|++ +++|.  |+        ++|  +.++.|+.|||+++|+.      |+
T Consensus       751 YG~TE~~~~~~-~~-~--~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~------~~  820 (994)
T PRK07868        751 FATTDGQAVLA-NV-S--GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARG------PI  820 (994)
T ss_pred             eeccccccccc-cc-C--CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCC------CC
Confidence            99999865433 22 1  34678999999998 67664  21        345  56788999999999974      55


Q ss_pred             CChhhhhhhccccc-cCCeeecCCCCC
Q 013780          410 NFFVFTLFLWGCEH-TDSFIRGKDQQT  435 (436)
Q Consensus       410 ~~~~~~~~~~~~~~-~~~~~~tgD~~~  435 (436)
                       +|+.+... ++|. .++||+|||+|+
T Consensus       821 -~p~~t~~~-~~~~~~dgw~~TGDlg~  845 (994)
T PRK07868        821 -DPTASVKR-GVFAPADTWISTEYLFR  845 (994)
T ss_pred             -ChhhhhHh-cccccCCEEEeccceEE
Confidence             34443322 2232 478999999874

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.3e-44  Score=353.78  Aligned_cols=338  Identities=22%  Similarity=0.305  Sum_probs=275.5

Q ss_pred             chHHHH-hhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           28 SMVHFL-FRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        28 ti~~~l-~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      ++.+.+ .++++++|+++|+++.  ++.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         3 ~~~~~~~~~~a~~~~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~   80 (458)
T PRK09029          3 IFSDWPWRHWAQVRPQAIALRLN--DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARV   80 (458)
T ss_pred             hhhcChHHHHHHhCCCceeeecC--CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEE
Confidence            445555 4557899999999875  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +++++..+.+++..+++++++++++++++... +....  ..                     ...     ..  .....
T Consensus        81 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~--~~---------------------~~~-----~~--~~~~~  129 (458)
T PRK09029         81 LPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSALT--SL---------------------HLQ-----LV--EGAHA  129 (458)
T ss_pred             eecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhcc--cc---------------------ccc-----cc--cccCc
Confidence            99999999999999999999999998765422 11000  00                     000     00  11112


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++++|||||||.||+|.+||+++..++...........  +++++..+|++|.+++. .++.++..|+++++
T Consensus       130 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~--~~~~l~~~p~~h~~g~~-~~~~~l~~G~~v~~  206 (458)
T PRK09029        130 VAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTA--QDSWLLSLPLFHVSGQG-IVWRWLYAGATLVV  206 (458)
T ss_pred             ccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCc--cceEEEecCcHhhhhhH-HHHHHHhCCceEEe
Confidence            3345788999999999999999999999999998776655544433  38999999999999985 67788999999998


Q ss_pred             cCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccccc
Q 013780          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMT  346 (436)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~t  346 (436)
                      .+.   ..+++.+  .++|.+..+|+++..+......    ..++|.+++||+++++.+.+++.+.  +.++++ .||+|
T Consensus       207 ~~~---~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~-~YG~t  274 (458)
T PRK09029        207 RDK---QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWC-GYGLT  274 (458)
T ss_pred             CCh---HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEec-ccccc
Confidence            864   5566666  3799999999999998876543    3479999999999999999999865  499999 99999


Q ss_pred             ccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCC
Q 013780          347 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS  426 (436)
Q Consensus       347 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~  426 (436)
                      |++...+....    ....++|+|+++++++|++            |||+++|+.++.|  |+++++.+....    .++
T Consensus       275 E~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~g--Y~~~~~~~~~~~----~~~  332 (458)
T PRK09029        275 EMASTVCAKRA----DGLAGVGSPLPGREVKLVD------------GEIWLRGASLALG--YWRQGQLVPLVN----DEG  332 (458)
T ss_pred             ccCcceeccCC----CCCCCCCCCCCCCEEEEeC------------CEEEEecCceeee--eecCcccccccc----CCC
Confidence            99875543322    2235699999999999986            8999999999999  999998876543    478


Q ss_pred             eeecCCCCC
Q 013780          427 FIRGKDQQT  435 (436)
Q Consensus       427 ~~~tgD~~~  435 (436)
                      ||+|||+|+
T Consensus       333 ~~~TGD~~~  341 (458)
T PRK09029        333 WFATRDRGE  341 (458)
T ss_pred             ccCCCCcEE
Confidence            999999874

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=1.2e-44  Score=353.45  Aligned_cols=315  Identities=18%  Similarity=0.233  Sum_probs=252.9

Q ss_pred             ccccHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEE
Q 013780           53 ESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  131 (436)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~gv-~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi  131 (436)
                      .-+.|+||.++++++|+.|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++++++++++
T Consensus        18 ~~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i   97 (452)
T PRK07445         18 IGYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW   97 (452)
T ss_pred             eecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence            357899999999999999999998 5799999999999999999999999999999999999999999999999999999


Q ss_pred             EccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCccee
Q 013780          132 TVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI  211 (436)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~  211 (436)
                      ++.......            .         ..                 .........+++.++++|||||||.||+|+
T Consensus        98 ~~~~~~~~~------------~---------~~-----------------~~~~~~~~~~~~~~~i~~TSGTTG~PKgV~  139 (452)
T PRK07445         98 GLDQLKLSH------------P---------PP-----------------LPSQGILPNLETGWIMIPTGGSSGQIRFAI  139 (452)
T ss_pred             ecCcccccc------------C---------CC-----------------CCccccCCCCCCcEEEEeCCCCCCCCcEEE
Confidence            876532100            0         00                 000011134678999999999999999999


Q ss_pred             hhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecH
Q 013780          212 LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP  291 (436)
Q Consensus       212 ~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p  291 (436)
                      +||+++..++........+   .++.+++.+|++|.+|+. .++.++..|+++++.+............++++|++.++|
T Consensus       140 ~t~~~l~~~~~~~~~~~~~---~~~~~~~~~Pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP  215 (452)
T PRK07445        140 HTWETLTASVQGFQRYFQL---QQVNSFCVLPLYHVSGLM-QFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVP  215 (452)
T ss_pred             echHHHHHHHHHHHHHhcC---CCCceEeccCchhhhhHH-HHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehH
Confidence            9999998877765554433   225678899999999995 778899999999988643333333444578999999999


Q ss_pred             HHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCcccccc
Q 013780          292 PIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV  371 (436)
Q Consensus       292 ~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~  371 (436)
                      +++..+.+..   ...+++||.+++||+++++++.+++++.  ++++++ .||+||++..+....+.......+++|+|+
T Consensus       216 ~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~  289 (452)
T PRK07445        216 TQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAP-TYGMTETASQIATLKPDDFLAGNNSSGQVL  289 (452)
T ss_pred             HHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhc--CCeEec-CcchhhhcccccccCchhhccCCCcCCccC
Confidence            9999988632   2357899999999999999999998764  489999 999999986655443332223567899999


Q ss_pred             CCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       372 ~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |+++++|+         .|+.|||+++|+.++.|  |++++.         ..++||+|||+|+
T Consensus       290 p~~~v~i~---------~g~~Gel~v~g~~~~~g--Y~~~~~---------~~~g~~~TGDl~~  333 (452)
T PRK07445        290 PHAQITIP---------ANQTGNITIQAQSLALG--YYPQIL---------DSQGIFETDDLGY  333 (452)
T ss_pred             CCCeEEEc---------CCCcceEEEeCCccchh--hcCCcc---------CCCCEEECCCEEE
Confidence            99999998         36789999999999999  998543         2467999999864

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=9.2e-43  Score=340.50  Aligned_cols=329  Identities=26%  Similarity=0.352  Sum_probs=266.5

Q ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccc
Q 013780           56 SFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE  135 (436)
Q Consensus        56 Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~  135 (436)
                      ||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++++++.++.+++..++++++++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             hHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhh
Q 013780          136 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK  215 (436)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~  215 (436)
                      .....       ...                  ..+..+...... ..........+++++++|||||||.||+|.++|+
T Consensus        81 ~~~~~-------~~~------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~  134 (436)
T TIGR01923        81 LEEKD-------FQA------------------DSLDRIEAAGRY-ETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFR  134 (436)
T ss_pred             ccccc-------eee------------------cchHhhhhcccc-cccccccCCcCceEEEEeCCCCCCCCcEEEEehH
Confidence            32110       000                  011111111110 1111233456789999999999999999999999


Q ss_pred             HHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHH
Q 013780          216 NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIIL  295 (436)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~  295 (436)
                      ++..++...........  .+++++.+|++|..++. .++.++..|+++++.+.+  ..+++.++++++|++.++|+++.
T Consensus       135 ~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~  209 (436)
T TIGR01923       135 NHYASAVGSKENLGFTE--DDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLN  209 (436)
T ss_pred             HHHHHHHHHHhhcCCCC--CceEEEccCcHhHHHHH-HHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHH
Confidence            99988777665554433  39999999999999985 788999999999999765  39999999999999999999999


Q ss_pred             HHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcE
Q 013780          296 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVE  375 (436)
Q Consensus       296 ~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~  375 (436)
                      .+.+.....    +++|.+++||+++++++.+++++.  ++.+++ .||+||+++.++.........+. ++|.|+++++
T Consensus       210 ~l~~~~~~~----~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~-~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~~~~  281 (436)
T TIGR01923       210 RLLDEGGHN----ENLRKILLGGSAIPAPLIEEAQQY--GLPIYL-SYGMTETCSQVTTATPEMLHARP-DVGRPLAGRE  281 (436)
T ss_pred             HHHhCcCCC----CceEEEEECCCCCCHHHHHHHHHh--CCceee-EecCCccchhccCcCcccccccc-CCCccCCCcE
Confidence            998875422    689999999999999999998875  599999 99999998766544333212223 5999999999


Q ss_pred             EEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          376 AQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       376 v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +++.+.+.      ++.|||+++|+.++.|  |+++++.+...+    .++||+|||+++
T Consensus       282 ~~i~~~~~------~~~Gel~v~~~~~~~g--y~~~~~~~~~~~----~~~~~~TGD~~~  329 (436)
T TIGR01923       282 IKIKVDNK------EGHGEIMVKGANLMKG--YLYQGELTPAFE----QQGWFNTGDIGE  329 (436)
T ss_pred             EEEEeCCC------CCceEEEEECCccchh--hCCChhhhhhhh----cCCCeeccceEE
Confidence            99944222      2679999999999999  999888877665    468999999763

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=9.3e-43  Score=345.39  Aligned_cols=338  Identities=18%  Similarity=0.196  Sum_probs=245.8

Q ss_pred             cCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccch------HHHHhhc----CCCcEEeccCCc
Q 013780           86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL------WDKVKDL----NLPAVLLGSKDK  155 (436)
Q Consensus        86 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~------~~~~~~~----~~~~~~~~~~~~  155 (436)
                      ++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++..      .+.+...    ....+++.....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            589999999999999999999999999999999999999999999998642      1111111    111122211100


Q ss_pred             cccccccccCcccchhhHHhhhcCCC-----CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhc
Q 013780          156 VSSSGLISRSSKIVSFHDLIELSGSV-----TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL  230 (436)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~  230 (436)
                      ....   ........++++.......     .........++++++|+|||||||.||+|++||+++..++........+
T Consensus        81 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~  157 (499)
T PLN03051         81 PVAV---PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDI  157 (499)
T ss_pred             ccCC---ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCC
Confidence            0000   0001223455554221100     0111122356899999999999999999999999987765443333333


Q ss_pred             cCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCccC
Q 013780          231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFD  307 (436)
Q Consensus       231 ~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~~~  307 (436)
                      .  .+|++++.+|++|..++. .++.++..|+++++.+ .+++..+++.|+++++|++.++|+++..|.+...  ....+
T Consensus       158 ~--~~d~~l~~~pl~h~~g~~-~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~  234 (499)
T PLN03051        158 Q--PGDVVCWPTNLGWMMGPW-LLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLD  234 (499)
T ss_pred             C--CCCEEEEccCcceeeehH-HHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCC
Confidence            2  339999999999999975 7888999999999886 4788999999999999999999999999987643  33457


Q ss_pred             CCcceEEEecCCCCcHHHHHHHHhhCC-CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCcc
Q 013780          308 ISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP  386 (436)
Q Consensus       308 l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~  386 (436)
                      +++||.+++||+++++++.+++++.++ +..+++ .||+||+++.+....... ..+++++|+|.++++++|+| ++|++
T Consensus       235 ~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~ivd-~~g~~  311 (499)
T PLN03051        235 WSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIE-YCGGTELASGYISSTLLQ-PQAPGAFSTASLGTRFVLLN-DNGVP  311 (499)
T ss_pred             chhheEEEecCCCCCHHHHHHHHHhccccceeEe-eeccccccceeecccccC-CCCCccccCCCCCceEEEEC-CCCCC
Confidence            889999999999999999988887432 378899 999999875443322221 34568999999999999999 58999


Q ss_pred             CCCC--CceEEEEecCCc--ccCccccCChhhhhhhc-c--cc--ccCCeeecCCCCC
Q 013780          387 LPPN--QLGEIWVRGPNV--TPGIVYINFFVFTLFLW-G--CE--HTDSFIRGKDQQT  435 (436)
Q Consensus       387 ~~~g--~~Gel~v~g~~~--~~g~~Y~~~~~~~~~~~-~--~~--~~~~~~~tgD~~~  435 (436)
                      ++.|  ++|||+++|+.+  +.|  ||+++. +...+ +  |+  ....||+|||+|+
T Consensus       312 ~~~g~~~~Gel~v~g~~~~~~~g--y~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~  366 (499)
T PLN03051        312 YPDDQPCVGEVALAPPMLGASDR--LLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMK  366 (499)
T ss_pred             CCCCCCcceEEEEecCcCCCCcc--ccCCcc-cceeeecCCccccCCcceeecCCeEE
Confidence            9988  479999999976  589  998653 33222 1  11  1224899999874

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.9e-41  Score=324.53  Aligned_cols=406  Identities=24%  Similarity=0.316  Sum_probs=310.5

Q ss_pred             CcCCCCCCCchHHHHhhhc--ccCCCceEEEeCCCC----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH
Q 013780           19 LVLPSDPSFSMVHFLFRNS--ASYSSKLALIDADSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF   92 (436)
Q Consensus        19 ~~~~~~~~~ti~~~l~~~~--~~~p~~~a~~~~~~~----~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~   92 (436)
                      .+++.. -.|+.+.+..+.  ...++++++++...+    ..+||.|+.+++.++|+.|++.|+++||+|++++|+.+++
T Consensus        56 ~w~~g~-~ln~~~n~~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~  134 (626)
T KOG1175|consen   56 KWFPGA-FLNACYNCLDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEA  134 (626)
T ss_pred             cccccc-hhhhhHhhhhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHH
Confidence            444442 255555554433  224788888765222    4599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCcc-------ccccccccC
Q 013780           93 PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKV-------SSSGLISRS  165 (436)
Q Consensus        93 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  165 (436)
                      +++++||.++|++.+++-..++.+++...++.++++++++.+......+......++...-...       .........
T Consensus       135 ~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  214 (626)
T KOG1175|consen  135 VIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR  214 (626)
T ss_pred             HHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc
Confidence            9999999999999999999999999999999999999999976555433332111110000000       000000001


Q ss_pred             cccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhh-hhHHhhhhccCCCCcEEEechhH
Q 013780          166 SKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAAS-LMISAHQELVGELDHVVLCVLPM  244 (436)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~p~  244 (436)
                      .....+++.+....  +..+....+.+++.+|+|||||||.||++.+++....-.. ........  ..+.|++++....
T Consensus       215 ~~d~~~~~~~~~a~--~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d--~q~~dv~~~~~d~  290 (626)
T KOG1175|consen  215 NRDLFWSLELKKAS--PEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFD--LQPSDVLWCASDL  290 (626)
T ss_pred             cccccHHHHhhhcC--CCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceecc--CCCcceEEEeccc
Confidence            11234455544444  3334667788999999999999999999999888765442 22222222  2334999999999


Q ss_pred             HHHHHHHHHHHhhccCCcEEEEc--CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcceEEEecCCC
Q 013780          245 FHVFGLSVILYDQLQKGNCVVSM--GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLKLVGSGAAP  320 (436)
Q Consensus       245 ~~~~g~~~~~~~~l~~G~~v~~~--~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr~i~~gg~~  320 (436)
                      .|+.+.++..+.+|.+|+++++.  +++++..+++.+.++++|+++..|+.++.|.+....  ...++++||++.++||+
T Consensus       291 GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gep  370 (626)
T KOG1175|consen  291 GWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEP  370 (626)
T ss_pred             CeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCcc
Confidence            99999998899999999999998  356999999999999999999999999988776544  34455789999999999


Q ss_pred             CcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCC-CceEEEEec
Q 013780          321 LGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN-QLGEIWVRG  399 (436)
Q Consensus       321 l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g-~~Gel~v~g  399 (436)
                      +.++..+++.+.++..+|++ .||+||+|+.+....+....-++++.+.|.+++.+.|.|+ +|..++.+ +.|+|+++.
T Consensus       371 i~~~~~ew~~~~~~~~pv~e-~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de-~g~~~~~~~~~G~l~~~~  448 (626)
T KOG1175|consen  371 INPEAWEWWKRVTGLDPIYE-TYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDE-NGNELPPSTGNGELRLKP  448 (626)
T ss_pred             CCcchHHHHHHhcCccchhh-ceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECC-CCCCcCCCCceeEEEEeC
Confidence            99999999999998447999 9999999998887766633578999999999999999995 89988876 889999998


Q ss_pred             C---CcccCccccCChhhhhhhccccc-cCCeeecCCCCC
Q 013780          400 P---NVTPGIVYINFFVFTLFLWGCEH-TDSFIRGKDQQT  435 (436)
Q Consensus       400 ~---~~~~g~~Y~~~~~~~~~~~~~~~-~~~~~~tgD~~~  435 (436)
                      +   ..+.+  ||+|++....  .+|. -.||+.|||.++
T Consensus       449 ~~P~~~~r~--~~~n~erf~~--~yf~k~pg~y~tGD~~~  484 (626)
T KOG1175|consen  449 PWPPGMFRT--LWGNHERFRA--AYFKKFPGYYFTGDGGR  484 (626)
T ss_pred             CCCcccccc--ccCCHHHhhh--hhcccCCceEEecCceE
Confidence            5   56888  9999993222  2222 367888998874

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-40  Score=320.44  Aligned_cols=287  Identities=17%  Similarity=0.140  Sum_probs=242.8

Q ss_pred             EEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhc
Q 013780           46 LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS  125 (436)
Q Consensus        46 ~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~  125 (436)
                      +++.  ++.+||.||.++++++|+.|. .|+++|++|+|+++|+++++++++|++++|++++|+++..+.+++..+++++
T Consensus         2 ~~~~--~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~   78 (414)
T PRK08308          2 LIVN--DEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRA   78 (414)
T ss_pred             eEec--CceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhC
Confidence            4555  689999999999999999985 6899999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCC
Q 013780          126 NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG  205 (436)
Q Consensus       126 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG  205 (436)
                      +++++++++....           .  .                .               .....++++++++|||||||
T Consensus        79 ~~~~~i~~~~~~~-----------~--~----------------~---------------~~~~~~~~~~~i~~TSGtTG  114 (414)
T PRK08308         79 GCHGLLYGESDFT-----------K--L----------------E---------------AVNYLAEEPSLLQYSSGTTG  114 (414)
T ss_pred             CCCEEEecCcccc-----------c--c----------------c---------------CCCCCCCCceEEEECCCCCC
Confidence            9999998753100           0  0                0               00124578999999999999


Q ss_pred             CCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcce
Q 013780          206 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVT  285 (436)
Q Consensus       206 ~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t  285 (436)
                      .||+|++||+++..+...+...+....  +++++..+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|
T Consensus       115 ~PKgv~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t  192 (414)
T PRK08308        115 EPKLIRRSWTEIDREIEAYNEALNCEQ--DETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQH  192 (414)
T ss_pred             CCcEEEEehHhHHHHHHHHHHhhCCCc--ccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCe
Confidence            999999999999988776655554433  389999999999999987899999999999999889999999999999999


Q ss_pred             EEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcC
Q 013780          286 VWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSG  365 (436)
Q Consensus       286 ~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~  365 (436)
                      +++++|+++..|.+.....    .+++.+++||+++++++.+++++.  ..++++ .||+||++++....  .  ...++
T Consensus       193 ~~~~~P~~~~~l~~~~~~~----~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~-~YG~tE~~~~~~~~--~--~~~~~  261 (414)
T PRK08308        193 ILYAVPLMLHILGRLLPGT----FQFHAVMTSGTPLPEAWFYKLRER--TTYMMQ-QYGCSEAGCVSICP--D--MKSHL  261 (414)
T ss_pred             EEEcCHHHHHHHHhcCCcc----ccccEEEEccCCCCHHHHHHHHHh--CChhhh-ccCccccCCeeecC--C--CCCCC
Confidence            9999999999998765321    368899999999999999999987  378999 99999998644322  1  34567


Q ss_pred             ccccccCCcEEEEEeCCCCccCCCCCceEEEEec
Q 013780          366 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG  399 (436)
Q Consensus       366 ~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g  399 (436)
                      ++|+|+|++++++.+.       .++.|||++++
T Consensus       262 ~~G~p~~~~~~~~~~~-------~~~~gel~v~~  288 (414)
T PRK08308        262 DLGNPLPHVSVSAGSD-------ENAPEEIVVKM  288 (414)
T ss_pred             ccCccCCCeEEEEecC-------CCCCceEEEEc
Confidence            8999999999999762       36679999975

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=3.7e-39  Score=341.11  Aligned_cols=376  Identities=13%  Similarity=0.069  Sum_probs=276.2

Q ss_pred             CchHHHHhhhcccCCCceEEEeC-CCC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 013780           27 FSMVHFLFRNSASYSSKLALIDA-DSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~-~~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G  103 (436)
                      .|+.++|.+.++++|+++|+... ..+  +++||+|+.++++++|+.|.++|+++||+|+|+++|+++|+++.+||+++|
T Consensus       427 ~Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~G  506 (1452)
T PTZ00297        427 RSLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYG  506 (1452)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            68999999999999999999742 123  689999999999999999999999999999999999999999999999999


Q ss_pred             CeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC---CCcEEeccCCccccccc--cccCcccchhhHHhhhc
Q 013780          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGL--ISRSSKIVSFHDLIELS  178 (436)
Q Consensus       104 ~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  178 (436)
                      ++.||+.+  +.+++.+++++++++++|++.+....+....   .+.+++..+........  ......+.+|++++..+
T Consensus       507 aV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G  584 (1452)
T PTZ00297        507 FTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKG  584 (1452)
T ss_pred             CEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcC
Confidence            99999975  4679999999999999999988777665542   33444432110000000  00111356788888765


Q ss_pred             CCCCCCCCCCCCCCCeEEEEc---CCCCCCCCcceehhhhHHHhhhhhHHhhhhcc-CCCCcEEEechhHHHHHHHHHHH
Q 013780          179 GSVTDIPDVSVKQTDAAALLY---SSGTTGVSKGVILTHKNFIAASLMISAHQELV-GELDHVVLCVLPMFHVFGLSVIL  254 (436)
Q Consensus       179 ~~~~~~~~~~~~~~~~a~i~~---TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~g~~~~~  254 (436)
                      ............+++++.|+|   ||||||.||||++||+|++.++.......... ...+|++++.+|++|+++.. ..
T Consensus       585 ~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~-~~  663 (1452)
T PTZ00297        585 RLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRV-FV  663 (1452)
T ss_pred             cccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHH-HH
Confidence            421222223446788999985   99999999999999999999988765432211 12349999999999999975 66


Q ss_pred             HhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--------------------------Ccc--
Q 013780          255 YDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--------------------------RKF--  306 (436)
Q Consensus       255 ~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--------------------------~~~--  306 (436)
                      +.++..|+++..   +++..+++.|++++||+++++|++|+.+.+....                          ...  
T Consensus       664 ~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~  740 (1452)
T PTZ00297        664 LGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDS  740 (1452)
T ss_pred             HHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            778999999874   4789999999999999999999999876543100                          000  


Q ss_pred             --------------CCCcceEEEecCC--CCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccc
Q 013780          307 --------------DISSLKLVGSGAA--PLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTL  370 (436)
Q Consensus       307 --------------~l~~lr~i~~gg~--~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p  370 (436)
                                    --.++|.+++||+  +++..+..       ++++.. +||+||..   +.+.+.  ..+  ..|.|
T Consensus       741 ~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~-------~i~i~~-g~glTE~~---~~~~~~--~~~--~~G~P  805 (1452)
T PTZ00297        741 SLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE-------HISVCY-VPCLREVF---FLPSEG--VFC--VDGTP  805 (1452)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC-------CceEEE-ecceEEee---eecCCC--Ccc--cCCee
Confidence                          0046889998873  44433333       477888 99999943   233333  222  23999


Q ss_pred             cCCcEEEEEeC-CCCccCCCCCceEEEEecCCcccCccccCChhhhhhhc-cccccCCeeecCCCCCC
Q 013780          371 VAGVEAQIVSV-DTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW-GCEHTDSFIRGKDQQTD  436 (436)
Q Consensus       371 ~~~~~v~i~d~-~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~-~~~~~~~~~~tgD~~~d  436 (436)
                      +|++++||.+. |.+.   .+..|||++       +  |+++|+.|.+.+ +|+ .+|.++.=||-+|
T Consensus       806 lpgvEvKI~~~~E~~~---~~~~GEIlv-------r--~~kdpe~T~e~~~gW~-~dG~L~IidRkKd  860 (1452)
T PTZ00297        806 APSLQVDLEPFDEPSD---GAGIGQLVL-------A--KKGEPRRTLPIAAQWK-RDRTLRLLGPPLG  860 (1452)
T ss_pred             cCceEEEEcccccccC---CCCCCeEEE-------E--ECCChHHHHHhhCcCc-cCCeEEEEecccc
Confidence            99999999973 3222   134699999       3  568999999876 555 3456666666654

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.7e-34  Score=291.57  Aligned_cols=373  Identities=22%  Similarity=0.288  Sum_probs=297.6

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.+.+.+++...|++.|++..  +..+||+++..+++++|+.|.+.|+.++++|+++++.+.+++++++|++++|..+
T Consensus       227 ~~i~~~f~~~a~~~p~~~a~~~~--~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~~y  304 (642)
T COG1020         227 LTIHLLFEEQAATTPDAVALVRG--GQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAY  304 (642)
T ss_pred             chHHHHHHHHHHhCCCceeEecC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCCeE
Confidence            67999999999999999999987  7999999999999999999999999999999999988999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|++|.++.+.+.+++++.+++.+++.............    +.                   .......... .....
T Consensus       305 vP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~-------------------~~~~~~~~~~-~~~~~  360 (642)
T COG1020         305 VPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG----LA-------------------LDDALSEIPD-TDPIP  360 (642)
T ss_pred             ecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc----cc-------------------cccccccCCc-cCccc
Confidence            999999999999999999999999998332211111100    00                   0000000000 11112


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....+++.++++|||||||.||||.++|+++.+...........  ..+++++...++....... .++.++..|+++++
T Consensus       361 ~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~--~~~d~~l~~~s~~fD~~~~-~~f~~l~~G~~l~~  437 (642)
T COG1020         361 QALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGL--DADDRVLALASLSFDASVF-EIFGALLEGARLVL  437 (642)
T ss_pred             ccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCC--CcccEEeecCCcccchhHH-HHHHHHhCCCEEEe
Confidence            33456899999999999999999999999998855444444333  2338888888886666654 79999999999999


Q ss_pred             cCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCc--cCCCcceEEEecCCCCcHHHHHHHHhhCC-CCeeee
Q 013780          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIP-GATIFQ  340 (436)
Q Consensus       267 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~i~~  340 (436)
                      .+.   .++..+.+.+.++++|++..+|.++..+........  ...+.+|.+++||+.++.++.+.+.+... ...+.+
T Consensus       438 ~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~  517 (642)
T COG1020         438 APALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLN  517 (642)
T ss_pred             cCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEee
Confidence            964   589999999999999999999999999887732222  22335999999999999999999988764 367888


Q ss_pred             ccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780          341 VGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  420 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~  420 (436)
                       .||.||+..................+|+|+++..+.|.| +.++.+|.|..||+++.|..+..|  |++.|+.|...|-
T Consensus       518 -~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~g--y~~~p~lt~~~f~  593 (642)
T COG1020         518 -LYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALG--YLNRPDLTAERFI  593 (642)
T ss_pred             -ccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhh--hcCChhhhHHHhh
Confidence             999999655444333221111256899999999999999 699999999999999999999999  9999999999994


Q ss_pred             ccccCCeeecCCCCC
Q 013780          421 CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ~~~~~~~~~tgD~~~  435 (436)
                      ..   .+|+|||+++
T Consensus       594 ~~---~~y~tgD~~r  605 (642)
T COG1020         594 AL---RLYRTGDLAR  605 (642)
T ss_pred             hc---cCccCCCeee
Confidence            22   3899999875

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.96  E-value=1.4e-27  Score=209.84  Aligned_cols=220  Identities=19%  Similarity=0.137  Sum_probs=163.8

Q ss_pred             HhhhcccCCCceEEEeC-C---CCccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEe
Q 013780           33 LFRNSASYSSKLALIDA-D---SDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS  107 (436)
Q Consensus        33 l~~~~~~~p~~~a~~~~-~---~~~~~Ty~el~~~~~~la~~L~~-~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v  107 (436)
                      |...++++|+++|++.. +   ++.++||+|+.++++++|+.|++ .|+++||+|+|+++|+++++++++|++++|++++
T Consensus         2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v   81 (227)
T TIGR03089         2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV   81 (227)
T ss_pred             hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            56778889999999753 2   23579999999999999999998 7999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCCC
Q 013780          108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDV  187 (436)
Q Consensus       108 ~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (436)
                      |++             ++++++++++++..+.+.. ......+...... .........++.++.+......  ....+.
T Consensus        82 p~n-------------~s~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  144 (227)
T TIGR03089        82 LAG-------------DPDADVVVTGPDRLAAAAG-SGEVVALSLDPLG-RRVAGELPPGVIDFAPEVRVHG--DQFAPY  144 (227)
T ss_pred             eCC-------------CCCCCEEEeCcchhhhccc-CCceEEEeccccc-cCCCCCCCCcccchhhhhhccC--CCCCCC
Confidence            995             6789999999887776542 2222222111000 0000001223345555554322  111222


Q ss_pred             -CCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          188 -SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       188 -~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                       ...++|+++++||||+         +|.+++.+.    ....+  ..+|+++ .+|++|.+|+.+.++.+|..|+++++
T Consensus       145 ~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l--~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~  208 (227)
T TIGR03089       145 EPPDATAPALVAGGGEW---------TGAELVAAA----RAAGL--PPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVL  208 (227)
T ss_pred             CCCCCCcceeeeccccc---------cHHHHHHHH----hhcCC--CCCCeEE-ecCCCchHHHHHHHHHHhccCceEEE
Confidence             3466899999999985         566665553    22223  2339999 99999999998889999999999999


Q ss_pred             cCCCCHHHHHHHHHHhcce
Q 013780          267 MGKFDIEMALRAIEKYRVT  285 (436)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t  285 (436)
                      .++|++..+++.|+++|+|
T Consensus       209 ~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       209 VTHPDPARLDQIAETERVT  227 (227)
T ss_pred             ecCCCHHHHHHHHHhhcCC
Confidence            9999999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=1.9e-27  Score=226.18  Aligned_cols=207  Identities=24%  Similarity=0.307  Sum_probs=168.3

Q ss_pred             CCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE--
Q 013780          189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS--  266 (436)
Q Consensus       189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~--  266 (436)
                      ..++++++++|||||||.||+|+++|+++...........  .  ..+.++..+|++|.+++. .++.++..|+++++  
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~--~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v~~~  106 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--G--GPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPVELD  106 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--C--CCCeEEEECChHHHHHHH-HHHHHHHcCCeEEecC
Confidence            4568999999999999999999999999988766543322  1  237889999999999986 67788888888877  


Q ss_pred             -cCCCCHHHHHHHHHHhc--ceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          267 -MGKFDIEMALRAIEKYR--VTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       267 -~~~~~~~~~~~~l~~~~--~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                       ...+++..+++.+++++  .++...+|..+..+...... ..+++++|.+++||+++++++.+++.+.  ++++++ .|
T Consensus       107 ~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~-~Y  182 (358)
T PRK07824        107 VSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVR-TY  182 (358)
T ss_pred             cCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEe-cc
Confidence             34678999999999998  56677788888777665432 2367899999999999999999999864  599999 99


Q ss_pred             cccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccc
Q 013780          344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEH  423 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~  423 (436)
                      |+||++..+.            ..|.|++++++++.|            |||+++|+.++.|  |+++++.+.     +.
T Consensus       183 G~TE~~~~~~------------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~g--Y~~~~~~~~-----~~  231 (358)
T PRK07824        183 GMSETSGGCV------------YDGVPLDGVRVRVED------------GRIALGGPTLAKG--YRNPVDPDP-----FA  231 (358)
T ss_pred             cCCccCCCcC------------cCceeCCCCEEEecC------------CEEEEecCccccc--cCCCccccc-----cc
Confidence            9999875432            248899999999944            8999999999999  999887532     23


Q ss_pred             cCCeeecCCCCC
Q 013780          424 TDSFIRGKDQQT  435 (436)
Q Consensus       424 ~~~~~~tgD~~~  435 (436)
                      .++||+|||+|+
T Consensus       232 ~~g~~~TGDl~~  243 (358)
T PRK07824        232 EPGWFRTDDLGA  243 (358)
T ss_pred             CCCceecccEEE
Confidence            467999999864

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=220.18  Aligned_cols=392  Identities=16%  Similarity=0.181  Sum_probs=279.9

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCC----CccccHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADS----DESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIA  101 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~-gv~~gd~V~l~~~n~~~~~~~~lA~~~  101 (436)
                      .+|.+.|+.+++.+|+.+|+.....    +..+||++|.+++.+++..|... -+++||.|++++++++|++++++||+.
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly  849 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY  849 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence            7899999999999999999976532    38999999999999999999765 479999999999999999999999999


Q ss_pred             hCCeEeecCCCCC------HHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHh
Q 013780          102 IGAIASTANPVYT------VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI  175 (436)
Q Consensus       102 ~G~~~v~l~~~~~------~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (436)
                      +|++++|++|...      ...+..+++..++.+|+++.+....++.......   .+.        ...+-+..+.++.
T Consensus       850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~---~~~--------s~~p~i~~~~~~~  918 (1363)
T KOG3628|consen  850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAH---VDQ--------SAIPLILVLPKLP  918 (1363)
T ss_pred             cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHH---hhh--------hcchhhhcccccc
Confidence            9999999998643      4678889999999999999887665554421000   000        0000111111111


Q ss_pred             ---hhc-----CCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHH
Q 013780          176 ---ELS-----GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV  247 (436)
Q Consensus       176 ---~~~-----~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  247 (436)
                         ...     ......++-......+|++=+.--++|.--++-.+|..+++.++.+...+.+...  .-++...+.+..
T Consensus       919 ~t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~--rpl~~~~~~~sG  996 (1363)
T KOG3628|consen  919 ETIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKS--RPLLGCSSPYSG  996 (1363)
T ss_pred             hhhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccC--CceEEEecCccc
Confidence               100     0001112233456788999998889999999999999999999998888887655  667777777778


Q ss_pred             HHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcc------eEEEec
Q 013780          248 FGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL------KLVGSG  317 (436)
Q Consensus       248 ~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l------r~i~~g  317 (436)
                      .|+..+.+...+.|.+-++.++    -+|..++..++++++.-++.+-..+..+.+....+..+++..      ..++..
T Consensus       997 lgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~ 1076 (1363)
T KOG3628|consen  997 LGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPA 1076 (1363)
T ss_pred             hhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeec
Confidence            8888888999999988777754    389999999999999999999988888877554433333222      334444


Q ss_pred             CCCCcHHHHHHHHhhCCCCee-----eeccccccccCCcccccCCCCC------c------cC-------------cCcc
Q 013780          318 AAPLGKELMEDCQKNIPGATI-----FQVGYGMTETCAPISLENPLVG------V------RR-------------SGSA  367 (436)
Q Consensus       318 g~~l~~~~~~~~~~~~~~~~i-----~~~~YG~tE~~~~~~~~~~~~~------~------~~-------------~~~~  367 (436)
                      -++....+.+.|.+.|....+     .. .|++-=--.++........      +      .+             ....
T Consensus      1077 ~~RPr~ali~sf~klfa~igLsp~avSt-sys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dS 1155 (1363)
T KOG3628|consen 1077 EERPRIALIASFKKLFAAIGLSPRAVST-SYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDS 1155 (1363)
T ss_pred             CCccHHHHHHHHHHHHHHcCCChhhhcc-cccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccC
Confidence            566667777777776642322     33 4443322222222111100      0      00             0123


Q ss_pred             ccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChh-hhhhhc------cccccCCeeecCCCC
Q 013780          368 GTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFV-FTLFLW------GCEHTDSFIRGKDQQ  434 (436)
Q Consensus       368 G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~-~~~~~~------~~~~~~~~~~tgD~~  434 (436)
                      |+..+++++.|++||+..+|.+|+.||||+.|.+-+.+  |++..+ .....|      |...+..|.||||+|
T Consensus      1156 G~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~--~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LG 1227 (1363)
T KOG3628|consen 1156 GKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASC--SFTIGDELRSNHFNARLSSGDLLGKSYARTGDLG 1227 (1363)
T ss_pred             CcccccceeEEeCCccccccccCCcceEEecccccccc--ccccCchhhhhhhhhhccccccccccceeeeeee
Confidence            77779999999999999999999999999999999988  876322 222222      555566899999987

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.93  E-value=3.9e-25  Score=214.53  Aligned_cols=203  Identities=19%  Similarity=0.213  Sum_probs=153.7

Q ss_pred             CCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCC-CCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcC
Q 013780          190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG  268 (436)
Q Consensus       190 ~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~  268 (436)
                      ..++++.+++||||||.||+|.++|.++..+...........+. .+|++++..++.+..+.+...+.++..|++++..+
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  152 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS  152 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence            45678899999999999999999999987665444333322222 23788776655443343334566788899998887


Q ss_pred             CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccC--CCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccccc
Q 013780          269 KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMT  346 (436)
Q Consensus       269 ~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~t  346 (436)
                      ..++..+++.|+++++|+++++|+++..|++.....+.+  ..++|.+++||+++++++.+.+++.|+ +++++ .||+|
T Consensus       153 ~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~-~YG~t  230 (422)
T TIGR02155       153 GGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG-MKATD-IYGLS  230 (422)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC-CceEe-cccch
Confidence            778899999999999999999999999988764433322  358999999999999999999999997 99999 99999


Q ss_pred             ccCCc-ccccCCCCCccCcCcccccc--CCcEEEEEeCCCCccCCCCCceEEEEecC
Q 013780          347 ETCAP-ISLENPLVGVRRSGSAGTLV--AGVEAQIVSVDTLKPLPPNQLGEIWVRGP  400 (436)
Q Consensus       347 E~~~~-~~~~~~~~~~~~~~~~G~p~--~~~~v~i~d~~~~~~~~~g~~Gel~v~g~  400 (436)
                      |+++. +...+..   .   ..|.++  +++.++|+|+++++++++|+.|||++++.
T Consensus       231 E~~~~~~~~~~~~---~---~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~  281 (422)
T TIGR02155       231 EVIGPGVAMECVE---T---QDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL  281 (422)
T ss_pred             hhcCCceeecccc---c---CCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC
Confidence            98532 2222111   1   123333  45788999988999999999999999874

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.89  E-value=2.7e-22  Score=194.96  Aligned_cols=201  Identities=20%  Similarity=0.195  Sum_probs=152.5

Q ss_pred             CCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCC-CCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE-LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++.+.+||||||.||+|.+||.++...+......+...+. ++|+++...+..+..+.....+.++..|++++.
T Consensus        82 ~~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        82 SADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             cCCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            3456788999999999999999999999998766554444322222 238888888887766665455677888888765


Q ss_pred             cCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCcc--CCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccc
Q 013780          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYG  344 (436)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG  344 (436)
                      ...  ....++.|+++++|++.++|+.+..|++.....+.  ...++|.+++||+++++++.+.+.+.|+ +++++ .||
T Consensus       162 ~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g-~~v~~-~YG  237 (445)
T TIGR03335       162 EGK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWG-CEVYN-TYG  237 (445)
T ss_pred             CCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEe-cCC
Confidence            442  35678999999999999999998888765433332  2468999999999999999999999997 99999 999


Q ss_pred             ccccCCcccccCCCCCccCcCcccccc--CCcEEEEEeCCCCccCCCCCceEEEEecCC
Q 013780          345 MTETCAPISLENPLVGVRRSGSAGTLV--AGVEAQIVSVDTLKPLPPNQLGEIWVRGPN  401 (436)
Q Consensus       345 ~tE~~~~~~~~~~~~~~~~~~~~G~p~--~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~  401 (436)
                      +||++. +. .+     ..  ..|..+  +.+.++|+|++++.++++|+.|||++.+-.
T Consensus       238 ~TE~~~-~~-~c-----~~--~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~  287 (445)
T TIGR03335       238 STEGTM-CG-EC-----QA--VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLL  287 (445)
T ss_pred             hhhhhh-eE-Ee-----cC--CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecC
Confidence            999852 21 11     11  123333  567899999988899999999999998753

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.87  E-value=1.6e-21  Score=185.03  Aligned_cols=171  Identities=17%  Similarity=0.108  Sum_probs=138.0

Q ss_pred             CCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCC
Q 013780          192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFD  271 (436)
Q Consensus       192 ~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~  271 (436)
                      +..++++|||||||.||+|.+||+++..++..............+++++.+|++|.+|+...++.++..|+++++.++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~  174 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAP  174 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCC
Confidence            56899999999999999999999999988776666554433322689999999999998767888999999999998889


Q ss_pred             HHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCc
Q 013780          272 IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAP  351 (436)
Q Consensus       272 ~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~  351 (436)
                      +..+++.++.+  |+++++|.+++.|.+..    ..++++|. ++||+++++++.+.+++. +...+++ .||+||++++
T Consensus       175 ~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~-~YG~TEt~~i  245 (386)
T TIGR02372       175 ASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLE-VYGATETGGI  245 (386)
T ss_pred             hHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhh-eecccccccc
Confidence            98888888754  89999999999997753    34677886 678999999999999986 4257888 9999999876


Q ss_pred             ccccCCCCCccCcCccccccCCcEEEE
Q 013780          352 ISLENPLVGVRRSGSAGTLVAGVEAQI  378 (436)
Q Consensus       352 ~~~~~~~~~~~~~~~~G~p~~~~~v~i  378 (436)
                      ++...       ++..|.|+|++++++
T Consensus       246 ~~~~~-------~~~~~~~~p~~~~~~  265 (386)
T TIGR02372       246 GLREA-------PDDPFRLLPDLACFA  265 (386)
T ss_pred             ccccC-------CCCCcccCCCccccC
Confidence            54321       234577888887654

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.75  E-value=4.6e-17  Score=151.09  Aligned_cols=209  Identities=22%  Similarity=0.184  Sum_probs=160.9

Q ss_pred             CCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCC-cEEEechhHHHHHHHHHHHHhhccCCcE
Q 013780          185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELD-HVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (436)
Q Consensus       185 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~g~~~~~~~~l~~G~~  263 (436)
                      .......+++..|-.||||||+|+.+.+|+..+...+..++..+...+... |++....-..-..|-...-+.+-.-|++
T Consensus        83 ~~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~  162 (438)
T COG1541          83 GDFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGAT  162 (438)
T ss_pred             ccccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEE
Confidence            344556677777999999999999999999999998888888877765543 6555554422222222233444446777


Q ss_pred             EEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCc--cCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeec
Q 013780          264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV  341 (436)
Q Consensus       264 v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~  341 (436)
                      ++-..+-+.+.-++++..+++|++.++|+.+..|++.....+  ..-.+||.+++|+|+++++..+.+.+.|+ +.+++ 
T Consensus       163 vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g-~~~~d-  240 (438)
T COG1541         163 VIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG-CKAFD-  240 (438)
T ss_pred             EEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC-Cceee-
Confidence            766666688999999999999999999999999998877664  33458999999999999999999999998 99999 


Q ss_pred             cccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecC
Q 013780          342 GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP  400 (436)
Q Consensus       342 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~  400 (436)
                      .||+||..+.....+..     ..-.-..-+...++|+||++|+.+++|+.|||.+.+=
T Consensus       241 iYGltE~~g~g~~eC~~-----~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L  294 (438)
T COG1541         241 IYGLTEGFGPGAGECTE-----RNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTL  294 (438)
T ss_pred             ccccccccCCccccccc-----ccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEec
Confidence            99999997775222221     1112223477889999999999999999999999774

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.71  E-value=2.6e-16  Score=155.95  Aligned_cols=397  Identities=18%  Similarity=0.175  Sum_probs=265.1

Q ss_pred             CCCCCCcceeecCCCCCcCCCCCC---CchHHHHhhhcccCCCceEEEeCCCC---ccccHHHHHHHHHHHHH-HHHhcC
Q 013780            3 KSGYGRDGIYRSLRPPLVLPSDPS---FSMVHFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSH-SFRHLG   75 (436)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~---~ti~~~l~~~~~~~p~~~a~~~~~~~---~~~Ty~el~~~~~~la~-~L~~~g   75 (436)
                      ++...+++|-+-+..+...++...   -.+..+++..-..++...|.++-++.   ..+||..+..++.++|+ .|.+-|
T Consensus        67 k~~~~~p~i~~~~~~~~~ntsss~~a~~d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksg  146 (1363)
T KOG3628|consen   67 KLQFTEPRIARFPINDPRNTSSSMMALTDIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSG  146 (1363)
T ss_pred             ccccccccccccccCCCCCCchhhhhhcchHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccC
Confidence            444555665554443333333221   34666777777788888888766543   68999999999999999 777889


Q ss_pred             CCCCCEEEEEcCCC--CcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccC
Q 013780           76 ITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSK  153 (436)
Q Consensus        76 v~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  153 (436)
                      +.++|+|.++...+  .++++..++|..+|.+++|+.+..+.+++..+++....+++++.....+.+.....+...    
T Consensus       147 l~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~----  222 (1363)
T KOG3628|consen  147 LKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSL----  222 (1363)
T ss_pred             CCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccH----
Confidence            99999999999865  899999999999999999999999999999999999999999887654443332200000    


Q ss_pred             CccccccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhc---
Q 013780          154 DKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL---  230 (436)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~---  230 (436)
                               ...-.+....++-.... .+....+...-. .++|-||.+++|.--+++.+|. ++.+-+........   
T Consensus       223 ---------~k~v~~w~t~~~k~~~~-~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa  290 (1363)
T KOG3628|consen  223 ---------AKAVAWWKTNDFKGNYT-KDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPA  290 (1363)
T ss_pred             ---------HHHHHhhhcccccceee-hhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChH
Confidence                     00000000000000000 000111111122 8999999999999889999988 55543332221111   


Q ss_pred             --------------cC-CCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCC---CCHHHHHHHHHHhcceEEEecHH
Q 013780          231 --------------VG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPP  292 (436)
Q Consensus       231 --------------~~-~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~---~~~~~~~~~l~~~~~t~l~~~p~  292 (436)
                                    .+ ...+.++.........|++..++.++..|.|...+++   ..|..+.+.+-+++++++..--.
T Consensus       291 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~  370 (1363)
T KOG3628|consen  291 RFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYA  370 (1363)
T ss_pred             HHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeeccc
Confidence                          11 1126677777778888999899999999999998876   68899999999999999887655


Q ss_pred             HHHHHHhc----c-------ccCccCCCcceEEEecCCCCcHHHHHHH----HhhCC------------------CCeee
Q 013780          293 IILALAKN----S-------LVRKFDISSLKLVGSGAAPLGKELMEDC----QKNIP------------------GATIF  339 (436)
Q Consensus       293 ~~~~l~~~----~-------~~~~~~l~~lr~i~~gg~~l~~~~~~~~----~~~~~------------------~~~i~  339 (436)
                      .+.+....    +       .....++++||.+++.-..++.+..+..    .+-++                  ++.+.
T Consensus       371 ~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is  450 (1363)
T KOG3628|consen  371 GLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPIS  450 (1363)
T ss_pred             ccCcccccccCCcccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEE
Confidence            54443322    1       1122568899999998888886654433    33222                  22222


Q ss_pred             eccccccccCCcccccCCCCCc----------------------------cCcCccccccCC-cEEEEEeCCCCccCCCC
Q 013780          340 QVGYGMTETCAPISLENPLVGV----------------------------RRSGSAGTLVAG-VEAQIVSVDTLKPLPPN  390 (436)
Q Consensus       340 ~~~YG~tE~~~~~~~~~~~~~~----------------------------~~~~~~G~p~~~-~~v~i~d~~~~~~~~~g  390 (436)
                        +=+..|.+......+....+                            .....+|+..|| +.+.|+++++...|.++
T Consensus       451 --~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~  528 (1363)
T KOG3628|consen  451 --FKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTD  528 (1363)
T ss_pred             --eccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccC
Confidence              22345655544443331110                            111235665555 57788899999999999


Q ss_pred             CceEEEEecCCcccCccccCChhhhhhhc
Q 013780          391 QLGEIWVRGPNVTPGIVYINFFVFTLFLW  419 (436)
Q Consensus       391 ~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~  419 (436)
                      ++|||||.+++...+  ||.-+..|...|
T Consensus       529 eVGEIwVsS~~~~~~--~~al~~~t~~~F  555 (1363)
T KOG3628|consen  529 EVGEIWVSSNSLGKL--FYALDKQTENTF  555 (1363)
T ss_pred             cceeEEEecCCcccc--eeeccccccceE
Confidence            999999999999999  999888888877

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=8.2e-16  Score=156.62  Aligned_cols=313  Identities=18%  Similarity=0.151  Sum_probs=194.2

Q ss_pred             chHHHHhhhcccCCCceEEEeCC----CC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 013780           28 SMVHFLFRNSASYSSKLALIDAD----SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIA  101 (436)
Q Consensus        28 ti~~~l~~~~~~~p~~~a~~~~~----~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~  101 (436)
                      ++..-+.+.+...|+..+..+..    .+  ..+||++....++.+++.|...|...|+.|++++..+.++++..++.++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~  116 (1032)
T KOG1178|consen   37 TLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLA  116 (1032)
T ss_pred             chhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhh
Confidence            45556777788888877775331    12  7899999999999999999999999999999999999999999999999


Q ss_pred             hCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhh-cCC
Q 013780          102 IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL-SGS  180 (436)
Q Consensus       102 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  180 (436)
                      +|..+++++|.++.-+....+.+......-........+......     ..+.       .....+...++.+.. ...
T Consensus       117 ~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~-----~~~~-------~~~~sv~~~~~~f~~~~~~  184 (1032)
T KOG1178|consen  117 AGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDIL-----LNSL-------FPKLSVETIADSFQMVLHN  184 (1032)
T ss_pred             cceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHH-----hhcc-------ccccchhhccchhhhhhcc
Confidence            999999999999921111111111111111101111111000000     0000       000001111111111 111


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhH-HHHHHHHHHHHhhcc
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM-FHVFGLSVILYDQLQ  259 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~g~~~~~~~~l~  259 (436)
                      ..........++..+++.||||+||.||+|..+|..+.+.-...........  .+.+-..... ++..-. -++...+.
T Consensus       185 ~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~--s~~~~~~~~~~~~d~i~-~~~~~~L~  261 (1032)
T KOG1178|consen  185 EDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTG--SDRFTFKTSVYFDDTIQ-KFIGALLF  261 (1032)
T ss_pred             CCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCc--cchhhhhheeecccchH-HHHhhHhh
Confidence            1233344556777999999999999999999999998776333222211111  1332111111 121111 13344455


Q ss_pred             CCcEEEEcCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccC----------c---cCCCcceEEEecCCCCcH
Q 013780          260 KGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR----------K---FDISSLKLVGSGAAPLGK  323 (436)
Q Consensus       260 ~G~~v~~~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~----------~---~~l~~lr~i~~gg~~l~~  323 (436)
                      .|+.+..+..   -++..+...+++++++.++.+|++.++++......          .   ...+.|+....+|++...
T Consensus       262 ~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v  341 (1032)
T KOG1178|consen  262 NGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLV  341 (1032)
T ss_pred             cCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccch
Confidence            5555555532   34799999999999999999999988887654431          1   122489999999999999


Q ss_pred             HHHHHHHhhCCCCeeeeccccccccCCcccccC
Q 013780          324 ELMEDCQKNIPGATIFQVGYGMTETCAPISLEN  356 (436)
Q Consensus       324 ~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~  356 (436)
                      ++...+-..+...-... -|+.++..+...+..
T Consensus       342 ~l~~s~~~~~~~~~~~~-~y~s~~~~~~~s~~~  373 (1032)
T KOG1178|consen  342 SLYTSTFDLLAEIFFGL-PYLSTDPTGLVSYDD  373 (1032)
T ss_pred             hhhhhhhhcccceeeee-cccCCCCccceeHHh
Confidence            99986666665233333 689998887776543

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.26  E-value=8.5e-11  Score=112.30  Aligned_cols=145  Identities=16%  Similarity=0.089  Sum_probs=98.1

Q ss_pred             EEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCC--CcEEEe-chhHHHHHHHHHHHHhhccCC-cEEEEcC-C
Q 013780          195 AALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL--DHVVLC-VLPMFHVFGLSVILYDQLQKG-NCVVSMG-K  269 (436)
Q Consensus       195 a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~--~~~~~~-~~p~~~~~g~~~~~~~~l~~G-~~v~~~~-~  269 (436)
                      ..+..||||||.|-.+..+..................+..  +.+.+. ..+. +.+       ..+... ..+...+ .
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly-------~~~~~~~~~~~~~~l~  173 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLY-------QSVNNRWISLDFFDLL  173 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHH-------HHHHhccceeeecCCC
Confidence            3455799999999999999887654433322222221111  122222 2221 111       111111 1122221 2


Q ss_pred             CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccC
Q 013780          270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC  349 (436)
Q Consensus       270 ~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~  349 (436)
                      .+.+.+++.|++++|+++.++|+.+..|++.....+.+ .+++.++++||+++++..+.+++.|+ +++++ .||+|| |
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~-~YG~tE-g  249 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQ-IYQATE-G  249 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeE-ccCCch-h
Confidence            46889999999999999999999999999876554434 47999999999999999999999998 99999 999999 5


Q ss_pred             Cc
Q 013780          350 AP  351 (436)
Q Consensus       350 ~~  351 (436)
                      .+
T Consensus       250 ~l  251 (430)
T TIGR02304       250 FL  251 (430)
T ss_pred             he
Confidence            43

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.94  E-value=8.6e-08  Score=89.70  Aligned_cols=204  Identities=19%  Similarity=0.166  Sum_probs=124.8

Q ss_pred             CCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC---CCCcEEEechhHHH----HHHHHHHHHhhccCC
Q 013780          189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG---ELDHVVLCVLPMFH----VFGLSVILYDQLQKG  261 (436)
Q Consensus       189 ~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~----~~g~~~~~~~~l~~G  261 (436)
                      ...+++..++.||||||+|--+.+.+..+..+...+........   ..+..++...|...    +.......+..+..+
T Consensus        86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~  165 (365)
T PF04443_consen   86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG  165 (365)
T ss_pred             cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence            34567888999999999987677766666665544443333211   11123333222211    111111233334466


Q ss_pred             cEEEEc-CCCCHHHHHHHHH----HhcceEEEecHHHHHHHHhccccCcc--CCC-cceEEEecC------CCCc-HHHH
Q 013780          262 NCVVSM-GKFDIEMALRAIE----KYRVTVWWVVPPIILALAKNSLVRKF--DIS-SLKLVGSGA------APLG-KELM  326 (436)
Q Consensus       262 ~~v~~~-~~~~~~~~~~~l~----~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~-~lr~i~~gg------~~l~-~~~~  326 (436)
                      +...+- ..++...++..+.    +.++..+++.|.++..+.......+.  .|+ ..+++-.||      +.++ +++.
T Consensus       166 ~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~  245 (365)
T PF04443_consen  166 SRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY  245 (365)
T ss_pred             ceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence            665553 3467777776664    45789999999877776654443333  343 466777776      4464 6888


Q ss_pred             HHHHhhCCC---CeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcc
Q 013780          327 EDCQKNIPG---ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVT  403 (436)
Q Consensus       327 ~~~~~~~~~---~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~  403 (436)
                      +.+.+.||-   ..+++ .||+||.....+.....   .      ...|-- |.|+|+++.++++.|++|-|.+-++...
T Consensus       246 ~~l~~~~Gv~~~~~i~~-~ygmtEl~s~~~~~~~~---~------~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~  314 (365)
T PF04443_consen  246 ARLQEVFGVIPIENIYD-MYGMTELNSQAYECGHG---H------FHVPPW-VIIRDPETLEPLPPGETGLIQVIDLANT  314 (365)
T ss_pred             HHHHHHHCCCCHHHeee-eeeccccchhheeCCCC---c------ccCCCe-EEEECCCCCcCCCCCCeeEEEEEccccc
Confidence            888888973   37888 99999976543322111   1      122222 7788999999999999999999887533

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=96.59  E-value=0.0069  Score=60.37  Aligned_cols=88  Identities=19%  Similarity=0.137  Sum_probs=47.1

Q ss_pred             CCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCC----
Q 013780          308 ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT----  383 (436)
Q Consensus       308 l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~----  383 (436)
                      +++|+.|.+.+.--.....+++++.+|++.++.-.|++||. .+.....+.    ....+=.|-.+ -.+.++.++    
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg-~i~i~~~~~----~~~~~l~~~~~-ffEFip~~~~~~~  339 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEG-FIGIPLDPE----DPGYVLAPDSG-FFEFIPVDEDEQN  339 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTE-EEEEES-CC----C--EEE-TTSS-EEEEEE-STT---
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccce-EEEEecCCC----CCceEeecCCe-EEEEEeccCCccc
Confidence            68999777766666667888888888887777659999994 333322111    11111112222 455555432    


Q ss_pred             ----C-----ccCCCCCceEEEEecCC
Q 013780          384 ----L-----KPLPPNQLGEIWVRGPN  401 (436)
Q Consensus       384 ----~-----~~~~~g~~Gel~v~g~~  401 (436)
                          .     ..+..|+.-||.+++.+
T Consensus       340 ~~~~~~~l~~~ele~G~~YelviTt~~  366 (528)
T PF03321_consen  340 PSEQPKTLLLHELEVGEEYELVITTNS  366 (528)
T ss_dssp             ----SSSEEGGG--TT-EEEEEEESTT
T ss_pred             ccCCCceecHHHhcCCCeEEEEEeccc
Confidence                1     23667888899998864

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=96.53  E-value=0.18  Score=50.49  Aligned_cols=42  Identities=10%  Similarity=-0.009  Sum_probs=33.4

Q ss_pred             CCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccccccc
Q 013780          307 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET  348 (436)
Q Consensus       307 ~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~  348 (436)
                      -.++++.|.+...--.......++..+++++++.-.|++||+
T Consensus       291 LWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~  332 (606)
T PLN02247        291 LWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSEC  332 (606)
T ss_pred             hCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccce
Confidence            357888888765555677778888888889888779999995

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=96.28  E-value=0.18  Score=50.54  Aligned_cols=42  Identities=12%  Similarity=0.008  Sum_probs=33.3

Q ss_pred             CCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccccccc
Q 013780          307 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET  348 (436)
Q Consensus       307 ~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~  348 (436)
                      -.++++.|.+...--.......++..+++++++.-.|++||+
T Consensus       302 LWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~  343 (612)
T PLN02620        302 LWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSEC  343 (612)
T ss_pred             hCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccce
Confidence            357888887766556677778888888889998779999995

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=95.99  E-value=0.081  Score=53.23  Aligned_cols=30  Identities=23%  Similarity=0.240  Sum_probs=25.7

Q ss_pred             CCCCCeEEEEcCCCCC-CCCcceehhhhHHH
Q 013780          189 VKQTDAAALLYSSGTT-GVSKGVILTHKNFI  218 (436)
Q Consensus       189 ~~~~~~a~i~~TSGtT-G~pK~v~~t~~~l~  218 (436)
                      ..++.+.+...||||| |.+|-+++|.+.+.
T Consensus        97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~  127 (597)
T PLN02249         97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID  127 (597)
T ss_pred             eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence            4567788899999999 89999999997665

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=95.64  E-value=0.11  Score=49.66  Aligned_cols=87  Identities=16%  Similarity=0.069  Sum_probs=72.1

Q ss_pred             ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--CcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEE
Q 013780           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (436)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v  130 (436)
                      .-+|..|....+..+|+.|...|..+||+|..+..-+  ..-+-..+|+.++|+.++|+.+... +.-..++++.++.++
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~-~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNT-ERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccH-HHHHHHHHhcCCcEE
Confidence            4699999999999999999999999999999877622  2226788999999999999988433 455678999999999


Q ss_pred             EEccchHHHH
Q 013780          131 ITVPELWDKV  140 (436)
Q Consensus       131 i~~~~~~~~~  140 (436)
                      .+.+.+.-.+
T Consensus       187 ~~tps~~l~l  196 (438)
T COG1541         187 AATPSYLLYL  196 (438)
T ss_pred             EEChHHHHHH
Confidence            9998765443

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=90.42  E-value=2.7  Score=40.84  Aligned_cols=87  Identities=11%  Similarity=0.110  Sum_probs=66.9

Q ss_pred             ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEE
Q 013780           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (436)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v  130 (436)
                      ..+|..++......+++.+...|+++||++......+.  ......+++..+|+.++++++.. .+.+...+++.++.++
T Consensus        93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l  171 (422)
T TIGR02155        93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII  171 (422)
T ss_pred             eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence            45788888777777788888889999999887665442  22334677889999999887654 4778889999999999


Q ss_pred             EEccchHHHH
Q 013780          131 ITVPELWDKV  140 (436)
Q Consensus       131 i~~~~~~~~~  140 (436)
                      +..+..+..+
T Consensus       172 ~~~Ps~l~~L  181 (422)
T TIGR02155       172 MVTPSYMLNL  181 (422)
T ss_pred             EEcHHHHHHH
Confidence            9998766544

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=90.35  E-value=3  Score=40.92  Aligned_cols=82  Identities=16%  Similarity=0.155  Sum_probs=63.2

Q ss_pred             ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCc--HHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEE
Q 013780           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (436)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v  130 (436)
                      ..+|..++...+..+++.+...|+++||++.++.+.+..  .....+++..+|+.+++...   .+....++++.++.++
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l  180 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI  180 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence            468999999988888988888899999999998876543  23456788899998876643   2344677889999998


Q ss_pred             EEccchH
Q 013780          131 ITVPELW  137 (436)
Q Consensus       131 i~~~~~~  137 (436)
                      +......
T Consensus       181 ~~~ps~l  187 (445)
T TIGR03335       181 VASVFKL  187 (445)
T ss_pred             EECHHHH
Confidence            8776543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=84.13  E-value=8.7  Score=38.21  Aligned_cols=99  Identities=17%  Similarity=0.182  Sum_probs=72.6

Q ss_pred             CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEeecC
Q 013780           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTAN  110 (436)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~l~  110 (436)
                      .++.++++..-+|       ..+|+..+...+..+...+   ++++++++...++...  .+...+++++..|+.+++. 
T Consensus       164 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-  239 (513)
T PRK07656        164 DPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL---GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPL-  239 (513)
T ss_pred             CCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh---CCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEec-
Confidence            3456666543222       5689998877666655444   7889999988887543  3455678999999988875 


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780          111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (436)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (436)
                      +..+.+.+...+++.++.+++..+..+..+..
T Consensus       240 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~  271 (513)
T PRK07656        240 PVFDPDEVFRLIETERITVLPGPPTMYNSLLQ  271 (513)
T ss_pred             CcCCHHHHHHHHHHhCCeEEechHHHHHHHHc
Confidence            56678889999999999999998887766544

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=82.33  E-value=17  Score=36.21  Aligned_cols=99  Identities=17%  Similarity=0.176  Sum_probs=72.0

Q ss_pred             CCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCC-cHHHHHHHHHHhCCeEeecCCC
Q 013780           41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTANPV  112 (436)
Q Consensus        41 p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~-~~~~~~lA~~~~G~~~v~l~~~  112 (436)
                      ++.++++..-+|       ..+|+..+...+.....   ..+++++|++....+... ..+...++++..|+..+..+..
T Consensus       166 ~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~  242 (521)
T PRK06187        166 ENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCA---WLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRF  242 (521)
T ss_pred             ccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHH---hhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCCC
Confidence            345666543223       46899988876666655   447899999988887543 2234455588899998877664


Q ss_pred             CCHHHHHHHHHhcCCcEEEEccchHHHHhhc
Q 013780          113 YTVSELSKQVKDSNPKLVITVPELWDKVKDL  143 (436)
Q Consensus       113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  143 (436)
                       +.+.+...+++.++..+++.+..+..+...
T Consensus       243 -~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~  272 (521)
T PRK06187        243 -DPENLLDLIETERVTFFFAVPTIWQMLLKA  272 (521)
T ss_pred             -CHHHHHHHHHHhCCeEEEchHHHHHHHHcC
Confidence             888999999999999999998877766543

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=81.62  E-value=19  Score=36.32  Aligned_cols=100  Identities=15%  Similarity=0.181  Sum_probs=71.0

Q ss_pred             cCCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--CcHHHHHHHHHHhCCeEeec
Q 013780           39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTA  109 (436)
Q Consensus        39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l  109 (436)
                      ..++.+|++..-+|       ..+|++.+.........   ..++.++|++..++|-.  ..+...++..+..|+..+..
T Consensus       180 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~  256 (539)
T PRK06334        180 KDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLK---FFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFA  256 (539)
T ss_pred             CCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEe
Confidence            34677777644223       57899888765544433   34678899988887743  33334467778889888776


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEccchHHHHh
Q 013780          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (436)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (436)
                      ......+.+...+++.++.++...+..+..+.
T Consensus       257 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  288 (539)
T PRK06334        257 YNPLYPKKIVEMIDEAKVTFLGSTPVFFDYIL  288 (539)
T ss_pred             cCCCCHHHHHHHHHHhCCcEEEecHHHHHHHH
Confidence            55577888999999999999999888776553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	436
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		4e-62
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		9e-57
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		1e-35
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-33
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-33
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		2e-33
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-33
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-28
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-28
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-28
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		4e-23
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-22
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-22
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-22
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		1e-19
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-19
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-19
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		7e-18
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-15
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		5e-15
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		6e-15
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		1e-14
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		4e-13
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-12
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		1e-11
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		5e-11
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-10
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-10
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-10
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		2e-10
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		4e-10
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		5e-10
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		6e-10
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		6e-10
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		6e-10
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		6e-10
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-09
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		2e-09
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		3e-09
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		9e-09
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		1e-08
4gr4_A	469	Crystal Structure Of Slgn1deltaasub Length = 469		3e-07
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		4e-07
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		6e-07
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		1e-06
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		3e-06
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		2e-05
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		2e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  235 bits (599), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 156/426 (36%), Positives = 238/426 (55%), Gaps = 31/426 (7%)
Query: 1   MEK--SGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFS 58
           MEK  +    D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S
Sbjct: 35  MEKQSNNNNSDVIFRSKLPDIYIPN--HLSLHDYIFQNISEFATKPCLINGPTGHVYTYS 92
Query: 59  QFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSEL 118
               I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E+
Sbjct: 93  DVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152
Query: 119 SKQVKDSNPKLVITVPELWDKVKDL-NLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL 177
           +KQ K SN KL+IT     DK+K L N   V++   D                F +L + 
Sbjct: 153 AKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLR---FTELTQS 209
Query: 178 SGSVTDIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGE--- 233
           +   +++ D V +   D  AL YSSGTTG+ KGV+LTHK      L+ S  Q++ GE   
Sbjct: 210 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHK-----GLVTSVAQQVDGENPN 264
Query: 234 ----LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
                D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +
Sbjct: 265 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPM 324
Query: 290 VPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
           VPPI+LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + Q GYGMTE  
Sbjct: 325 VPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ-GYGMTEAG 383
Query: 350 APISL-----ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTP 404
             +++     + P     +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +  
Sbjct: 384 PVLAMSLGFAKEPF--PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMK 441
Query: 405 GIVYIN 410
           G  Y+N
Sbjct: 442 G--YLN 445

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  217 bits (553), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 141/408 (34%), Positives = 219/408 (53%), Gaps = 25/408 (6%)
Query: 11  IYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           I+RS  P + +P +    +  ++  N +++SSK  LI+  + +  +++  +    +V+  
Sbjct: 8   IFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASG 65
Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
              +GI + DV+++F P+S  F + FLG    GAI + ANP  T +EL+K  K S  KL+
Sbjct: 66  LNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLL 125
Query: 131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
           IT    ++KVKD          +                 F +L +      + P V + 
Sbjct: 126 ITQACYYEKVKDF-------ARESDVKVMCVDSAPDGCLHFSELTQ--ADENEAPQVDIS 176
Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVF 248
             D  AL YSSGTTG+ KGV+LTHK  I   A  +   +  L    + V+LCVLPMFH++
Sbjct: 177 PDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIY 236
Query: 249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
            L+ I+   L+ G  ++ M KF+I   L  IEKY+V++  VVPP+++++AK+  + K D+
Sbjct: 237 ALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDL 296
Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET------CAPISLENPLVGVR 362
           SSL+++ SG APLGKEL +  +   P A + Q GYGMTE       C   + E   +   
Sbjct: 297 SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ-GYGMTEAGPVLAMCLAFAKEPFDI--- 352
Query: 363 RSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           + G+ GT+V   E +IV  +T   LP NQ GEI +RG  +  G  Y+N
Sbjct: 353 KPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG--YLN 398

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/411 (28%), Positives = 196/411 (47%), Gaps = 35/411 (8%)
Query: 17  PPLV-LPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLG 75
           PP   L    +   +H   +  A     +A  DA ++ ++++S++  +  +++ + +  G
Sbjct: 46  PPFYPLEDGTAGEQLHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYG 105
Query: 76  ITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133
           +  +  + + + NS+ F  P+C  G + IG   +  N +Y   EL   +  S P +V   
Sbjct: 106 LGLQHHIAVCSENSLQFFMPVC--GALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCS 163
Query: 134 PELWDKVKDLN--LPA----VLLGSKDXXXXXXXXXXXXXXXXFHDLIE--LSGSVTD-- 183
                K+  +   LP     V+L S++                 +  IE  L     +  
Sbjct: 164 KRALQKILGVQKKLPIIQKIVILDSREDYMGKQS---------MYSFIESHLPAGFNEYD 214
Query: 184 -IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVL 239
            IPD   ++T  A ++ SSG+TG+ KGV LTHKN             + G     D  +L
Sbjct: 215 YIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVR--FSHCRDPVFGNQIIPDTAIL 272
Query: 240 CVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
            V+P  H FG+   L   L  G  +V M +F+ E+ LR+++ Y++    +VP +    AK
Sbjct: 273 TVIPFHHGFGMFTTL-GYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAK 331
Query: 300 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLV 359
           ++LV K+D+S+L  + SG APL KE+ E   K      I Q GYG+TET + I +  P  
Sbjct: 332 STLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQ-GYGLTETTSAIII-TPRG 389
Query: 360 GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
              + G+ G +V    A+IV +DT K L  NQ GE+ V+GP +  G  Y+N
Sbjct: 390 RDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKG--YVN 438

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 192/394 (48%), Gaps = 25/394 (6%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 29  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 88
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN +Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 89  NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 148
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 149 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 204
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+   A      A   + G     D  +L V+P  H FG+   L   L
Sbjct: 205 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 261
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L  + SG 
Sbjct: 262 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 321
Query: 319 APLGKELMEDCQK--NIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA 376
           APL KE+ E   K  ++PG    + GYG+TET + I L  P  G  + G+ G +V   EA
Sbjct: 322 APLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI-LITP-EGDDKPGAVGKVVPFFEA 376
Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           ++V +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 377 KVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVN 408

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 192/394 (48%), Gaps = 25/394 (6%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 24  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN +Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 84  NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 199
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+   A      A   + G     D  +L V+P  H FG+   L   L
Sbjct: 200 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 256
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L  + SG 
Sbjct: 257 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316
Query: 319 APLGKELMEDCQK--NIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA 376
           APL KE+ E   K  ++PG    + GYG+TET + I L  P  G  + G+ G +V   EA
Sbjct: 317 APLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI-LITP-EGDDKPGAVGKVVPFFEA 371
Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           ++V +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 372 KVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVN 403

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 192/394 (48%), Gaps = 25/394 (6%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 29  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSE 88
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN  Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 89  NSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 148
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 149 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 204
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+    A     A   + G     D  +L V+P  H FG+   L   L
Sbjct: 205 GSTGLPKGVALPHRAL--AVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTL-GYL 261
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +   LAK++L+ K+D+S+L  + SG 
Sbjct: 262 ISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGG 321
Query: 319 APLGKELMEDCQK--NIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA 376
           APL KE+ E   K  ++PG    + GYG+TET + I L  P  G  + G+ G +V   EA
Sbjct: 322 APLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI-LITP-KGDDKPGAVGKVVPFFEA 376
Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           ++V +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 377 KVVDLDTGKTLGVNQRGELSVRGPMIMSG--YVN 408

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 192/394 (48%), Gaps = 25/394 (6%)
Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
             +H   +  A     +A  DA  + +++++++  + ++++ + +  G+     +++ + 
Sbjct: 24  EQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83
Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--L 145
           NS+ F +  LG + IG   + AN +Y   EL   +  S P +V    +   K+ ++   L
Sbjct: 84  NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL 143
Query: 146 PAV----LLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
           P +    ++ SK                      E       +P+   +    A ++ SS
Sbjct: 144 PIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF----VPESFDRDKTIALIMNSS 199
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGEL---DHVVLCVLPMFHVFGLSVILYDQL 258
           G+TG+ KGV L H+   A      A   + G     D  +L V+P  H FG+   L   L
Sbjct: 200 GSTGLPKGVALPHRT--ACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYL 256
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGA 318
             G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L  + SG 
Sbjct: 257 ICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316
Query: 319 APLGKELMEDCQK--NIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA 376
           APL KE+ E   K  ++PG    + GYG+TET + I L  P  G  + G+ G +V   EA
Sbjct: 317 APLSKEVGEAVAKRFHLPG---IRQGYGLTETTSAI-LITP-EGDDKPGAVGKVVPFFEA 371
Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           ++V +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 372 KVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVN 403

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 179/375 (47%), Gaps = 19/375 (5%)
Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +A  +A +    S++++      +  + ++ G+     + + + N   F I  +  + IG
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
              +  N +YT+ EL   +  S P +V +  +  DKV  +      + +           
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----F 217
                  F       G   +    V V + +  AL+  SSG+TG+ KGV LTH+N    F
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 218 IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
             A   I  +Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
            ++ Y+ T   +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337
Query: 336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 395
               + GYG+TET + I +     G  + G++G +V   +A+++ +DT K L PN+ GE+
Sbjct: 338 V---RQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 396 WVRGPNVTPGIVYIN 410
            V+GP +  G  Y+N
Sbjct: 393 CVKGPMLMKG--YVN 405

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 179/375 (47%), Gaps = 19/375 (5%)
Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +A  +A +    S++++      +  + ++ G+     + + + N   F I  +  + IG
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
              +  N +YT+ EL   +  S P +V +  +  DKV  +      + +           
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----F 217
                  F       G   +    V V + +  AL+  SSG+TG+ KGV LTH+N    F
Sbjct: 162 GYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 218 IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
             A   I  +Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
            ++ Y+ T   +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337
Query: 336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 395
               + GYG+TET + I +     G  + G++G +V   +A+++ +DT K L PN+ GE+
Sbjct: 338 V---RQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 396 WVRGPNVTPGIVYIN 410
            V+GP +  G  Y+N
Sbjct: 393 CVKGPMLMKG--YVN 405

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/375 (28%), Positives = 179/375 (47%), Gaps = 19/375 (5%)
Query: 44  LALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103
           +A  +A +    S++++      +  + ++ G+     + + + N   F I  +  + IG
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101
Query: 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXX 163
              +  N +YT+ EL   +  S P +V +  +  DKV  +      + +           
Sbjct: 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR 161
Query: 164 XXXXXXXFHDLIELSG-SVTDIPDVSVKQTDAAALLY-SSGTTGVSKGVILTHKN----F 217
                  F       G   +    V V + +  AL+  SSG+TG+ KGV LTH+N    F
Sbjct: 162 GYQCLDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 218 IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALR 277
             A   I  +Q   G     VL V+P  H FG+   L   L  G  VV + KFD E  L+
Sbjct: 222 SHARDPIYGNQVSPGT---AVLTVVPFHHGFGMFTTL-GYLICGFRVVMLTKFDEETFLK 277
Query: 278 AIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK--NIPG 335
            ++ Y+ T   +VP +   L K+ L+ K+D+S+L  + SG APL KE+ E   +  N+PG
Sbjct: 278 TLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG 337
Query: 336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 395
               + GYG+TET + I +     G  + G++G +V   +A+++ +DT K L PN+ GE+
Sbjct: 338 V---RQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 396 WVRGPNVTPGIVYIN 410
            V+GP +  G  Y+N
Sbjct: 393 CVKGPMLMKG--YVN 405

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 159/373 (42%), Gaps = 40/373 (10%)
Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
           KLA+  A  D+ +S+++  +   +V++     G+   D V      S+   + +L  +  
Sbjct: 18  KLAIETAAGDK-ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRA 76
Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXX 162
           G +    N  YT+ EL   + D+ PK+V+  P   D +  +   A  +G+          
Sbjct: 77  GGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI---AAKVGATVETLGP--- 130
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                        +  GS+TD           +     D AA+LY+SGTTG SKG  L+H
Sbjct: 131 -------------DGRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAXLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L      + + KFD + 
Sbjct: 178 DNLASNSLTLVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDK 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
            L      R TV   VP     L ++  + K      +L  SG+APL    + D  +   
Sbjct: 236 ILDLXA--RATVLXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPL----LADTHREWS 289
Query: 335 GATIFQV--GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 392
             T   V   YG TET    S  NP  G R  G+ G  + GV A++   +T K LP   +
Sbjct: 290 AKTGHAVLERYGXTETNXNTS--NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI 347
Query: 393 GEIWVRGPNVTPG 405
           G I V+GPNV  G
Sbjct: 348 GXIEVKGPNVFKG 360

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 173/400 (43%), Gaps = 39/400 (9%)
Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITK 78
           P  S+   +   +  +  K A+I A+        ES +F +   +  K++      G+ K
Sbjct: 17  PKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRK 76
Query: 79  KDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD 138
            + V +  PNSI +      +  + A     NP Y   EL   + DS    ++    L++
Sbjct: 77  GEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYE 136
Query: 139 KVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL--SGSVTDIPDVSVK-QTDAA 195
                N   VL                      + L E+  SGS  D  +V V  + D A
Sbjct: 137 -----NFKPVL-------EKTGVERVFVVGGEVNSLSEVXDSGS-EDFENVKVNPEEDVA 183
Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV--FGLSVI 253
            + Y+ GTTG  KGV LTH N  A +L ++    L    D +V C  P FH   FGL  +
Sbjct: 184 LIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGL-SHXDTIVGCX-PXFHSAEFGLVNL 241
Query: 254 LYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSL 311
               +  GN  V  G F+ E     IEKY+ T  W VPP +  L     S  + +D S L
Sbjct: 242 ---XVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYL 298
Query: 312 KLVGSGAAPLGKELMEDCQK------NIPGATIFQVGYGMTETCAPISLENPLVGVRRSG 365
           K+  +GA P+   L+E   K      N P     Q+ +G TE C P    NP + + +S 
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQI-WGXTEAC-PXVTTNPPLRLDKST 356
Query: 366 SAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           + G   + +E +++S++  + L   + GEI +RGPN+  G
Sbjct: 357 TQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG 396

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 155/348 (44%), Gaps = 34/348 (9%)
Query: 30  VHFLFRNSASYSSKL-ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           + ++ R  A+ S +L A ++  +D  ++++Q  ++  + +     LGI K D V +  PN
Sbjct: 18  IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 77
Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S+ F   F G   +GA+A   N      E+S  + DS  K+VI                 
Sbjct: 78  SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----------------- 120
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLI-------ELSGSVTDIPDVSVKQTDAAALLYSS 201
             G+                    D I        L  +  D P V     D   ++Y+S
Sbjct: 121 -YGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTS 179
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG  KGV+ TH++  +A+   ++  ++       +L  LPMFHV  L+ +++  + +G
Sbjct: 180 GTTGHPKGVVHTHESVHSAASSWASTIDV--RYRDRLLLPLPMFHVAALTTVIFSAM-RG 236
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
             ++SM +FD       I + RV +   VP I+  + +     + D    +   +G AP+
Sbjct: 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM 296
Query: 322 GKELME-DCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAG 368
            + L++    KNI    + Q GY +TE+C   +L      +R++GSAG
Sbjct: 297 PEALIKIYAAKNI---EVVQ-GYALTESCGGGTLLLSEDALRKAGSAG 340

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 155/348 (44%), Gaps = 34/348 (9%)
Query: 30  VHFLFRNSASYSSKL-ALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           + ++ R  A+ S +L A ++  +D  ++++Q  ++  + +     LGI K D V +  PN
Sbjct: 4   IGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPN 63
Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S+ F   F G   +GA+A   N      E+S  + DS  K+VI                 
Sbjct: 64  SVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----------------- 106
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLI-------ELSGSVTDIPDVSVKQTDAAALLYSS 201
             G+                    D I        L  +  D P V     D   ++Y+S
Sbjct: 107 -YGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYTS 165
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG  KGV+ TH++  +A+   ++  ++       +L  LPMFHV  L+ +++  + +G
Sbjct: 166 GTTGHPKGVVHTHESVHSAASSWASTIDV--RYRDRLLLPLPMFHVAALTTVIFSAM-RG 222
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
             ++SM +FD       I + RV +   VP I+  + +     + D    +   +G AP+
Sbjct: 223 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPM 282
Query: 322 GKELME-DCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAG 368
            + L++    KNI    + Q GY +TE+C   +L      +R++GSAG
Sbjct: 283 PEALIKIYAAKNI---EVVQ-GYALTESCGGGTLLLSEDALRKAGSAG 326

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 153/373 (41%), Gaps = 47/373 (12%)
Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+  + + +S+++  +   +V++     G+   D V      S+   + +L  +  G + 
Sbjct: 21  IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
              N  YT+ EL   + D+ P +V+  P   D +  +          LG           
Sbjct: 81  LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           GS+TD           +     D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L     ++ +  FD + 
Sbjct: 178 DNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
            L  +   R TV   VP     L ++  +       ++L  SG+AP    L+ D  +   
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAP----LLADTHREWS 289
Query: 335 GATIFQV--GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 392
             T   V   YGMTET   ++  NP  G R  G+ G  + GV A++   +T   LP   +
Sbjct: 290 AXTGHAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDI 347
Query: 393 GEIWVRGPNVTPG 405
           G I V GPNV  G
Sbjct: 348 GMIEVXGPNVFXG 360

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 153/373 (41%), Gaps = 47/373 (12%)
Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+  + + +S+++  +   +V++     G+   D V      S+   + +L  +  G + 
Sbjct: 21  IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
              N  YT+ EL   + D+ P +V+  P   D +  +          LG           
Sbjct: 81  LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           GS+TD           +     D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L     ++ +  FD + 
Sbjct: 178 DNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
            L  +   R TV   VP     L ++  +       ++L  SG+AP    L+ D  +   
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAP----LLADTHREWS 289
Query: 335 GATIFQV--GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 392
             T   V   YGMTET   ++  NP  G R  G+ G  + GV A++   +T   LP   +
Sbjct: 290 AXTGHAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDI 347
Query: 393 GEIWVRGPNVTPG 405
           G I V GPNV  G
Sbjct: 348 GMIEVXGPNVFXG 360

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 153/373 (41%), Gaps = 47/373 (12%)
Query: 47  IDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106
           I+  + + +S+++  +   +V++     G+   D V      S+   + +L  +  G + 
Sbjct: 21  IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVY 80
Query: 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVL----LGSKDXXXXXXXX 162
              N  YT+ EL   + D+ P +V+  P   D +  +          LG           
Sbjct: 81  LPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDG-------- 132
Query: 163 XXXXXXXXFHDLIELSGSVTDIP--------DVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           GS+TD           +     D AA+LY+SGTTG S G +L+H
Sbjct: 133 ---------------RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSXGAMLSH 177
Query: 215 KNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEM 274
            N  + SL +  +       D V++  LP++H  GL V     L     ++ +  FD + 
Sbjct: 178 DNLASNSLTLVDYWRFT--PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDX 235
Query: 275 ALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334
            L  +   R TV   VP     L ++  +       ++L  SG+AP    L+ D  +   
Sbjct: 236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAP----LLADTHREWS 289
Query: 335 GATIFQV--GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 392
             T   V   YGMTET   ++  NP  G R  G+ G  + GV A++   +T   LP   +
Sbjct: 290 AXTGHAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDI 347
Query: 393 GEIWVRGPNVTPG 405
           G I V GPNV  G
Sbjct: 348 GMIEVXGPNVFXG 360

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 180/391 (46%), Gaps = 36/391 (9%)
Query: 27  FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA 86
            S+  +L++ +      +A+ D    ES ++   +++  + S   + L   ++  V ++ 
Sbjct: 1   MSLDFWLYKQAQQNGHHIAITDGQ--ESYTY---QNLYCEASLLAKRLKAYQQSRVGLYI 55
Query: 87  PNSIHFPI----CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI-TVPELWDKVK 141
            NSI   I    C+L  I I  I +   P    +E++ Q++  + +L+  T+P      +
Sbjct: 56  DNSIQSIILIHACWLANIEIAMINTRLTP----NEMTNQMRSIDVQLIFCTLPLELRGFQ 111
Query: 142 DLNLPAVLLGSKDXXXXXXXXXXX-XXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYS 200
            ++L  +    +D                  ++ +    S ++I + S    D A+++++
Sbjct: 112 IVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFT 171
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260
           SGTTG  K V  T +N  A++  I   + L  + D   L VLP++H+ GLSV+L   ++ 
Sbjct: 172 SGTTGPQKAVPQTFRNHYASA--IGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIE- 228
Query: 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAP 320
           G  V  + KF+ E  L  I+  R+T   +VP  +  L +  L   +++  + L   G A 
Sbjct: 229 GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILL---GGAK 285
Query: 321 LGKELMEDC-QKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIV 379
           L   ++E   Q N+P   I+   +GMTETC+      P +   R  + G   A V+ +I 
Sbjct: 286 LSATMIETALQYNLP---IYN-SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIK 341
Query: 380 SVDTLKPLPPNQ--LGEIWVRGPNVTPGIVY 408
           +        PN+   GE+ ++G NV  G +Y
Sbjct: 342 N--------PNKEGHGELMIKGANVMNGYLY 364

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 132/302 (43%), Gaps = 46/302 (15%)
Query: 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXX 169
           NP     EL+  + DS P LV+  P       D  LP  L G+ +               
Sbjct: 99  NPKSGDKELAHILSDSAPSLVLAPP-------DAELPPAL-GALERVDVD---------- 140
Query: 170 XFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE 229
                +   G+V   P+      D A ++Y+SGTTG  KG ++  +        ++   +
Sbjct: 141 -----VRARGAV---PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 230 LVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWV 289
             GE   V++  LP+FHV GL + +   L++G  V  +G+F  E A R +     T+ + 
Sbjct: 193 WTGE--DVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFG 249
Query: 290 VPPIILALAKN-----SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQV--G 342
           VP +   +A+       L +    + L + GS A P+         + I  AT  +V   
Sbjct: 250 VPTMYHRIAETLPADPELAKALAGARLLVSGSAALPV------HDHERIAAATGRRVIER 303
Query: 343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD--TLKPLPPNQLGEIWVRGP 400
           YGMTET    S+     G  R+G+ G  + GVE ++V  D   +  L    +GEI VRGP
Sbjct: 304 YGMTETLMNTSVR--ADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGP 361
Query: 401 NV 402
           N+
Sbjct: 362 NL 363

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 165/382 (43%), Gaps = 28/382 (7%)
Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L   +A Y  ++A+   ++    S+ +  +   +++  F+ LGI +KD V++  PN   
Sbjct: 30  LLRDRAAKYGDRIAITCGNT--HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE 87
Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           F      +  +GA+   A P +  SE++   + +     I +P   D     +  ++   
Sbjct: 88  FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQ 143
Query: 152 SKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
            +                 F  L +L      +P+V  K +D A L  S G+TG+SK + 
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIP 201
Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCV 264
            TH ++I  SL  S     V  LDH  V L  LPM H + LS      +LY     G  V
Sbjct: 202 RTHDDYIY-SLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY----AGGRV 253
Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
           V       + A   IE+ +VT+  +VPP+ +     +  R+ D+SSL+++  G A    E
Sbjct: 254 VLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAE 313
Query: 325 LMEDCQKNIPGATIFQVGYGMTETCAPIS-LENPLVGVRRSGSAGTLVAGVEAQIVSVDT 383
                 K + G T+ QV +GM E     + L++P   +    + G  ++  +   V  D 
Sbjct: 314 AARRV-KAVFGCTLQQV-FGMAEGLVNYTRLDDPEEII--VNTQGKPMSPYDESRVWDDH 369
Query: 384 LKPLPPNQLGEIWVRGPNVTPG 405
            + + P + G +  RGP    G
Sbjct: 370 DRDVKPGETGHLLTRGPYTIRG 391

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 175/408 (42%), Gaps = 34/408 (8%)
Query: 27  FSMVHFLFRNSASYSSKLA-LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85
           F++     RN+A +  + A ++D      L+   + +   +++      G+   D V I 
Sbjct: 6   FTLADVYRRNAALFPDRTAFMVDG---VRLTHRDYLARAERLASGLLRDGVHTGDRVAIL 62
Query: 86  APNSIHFPICFLGVIA-IGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
           + N     I  +G +A IGAI    N      E++  + D  P +V+   +  D V  + 
Sbjct: 63  SQNCSEM-IELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV- 120
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT 204
           LP+ L G K                 F DL     S T          D   +++++   
Sbjct: 121 LPS-LGGVK---KAYAIGDGSGPFAPFKDL----ASDTPFSAPEFGAADGFVIIHTAAVG 172
Query: 205 GVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           G  +G +++  N  IA S ++ A +  + E D V L +LP+FHV GL ++L  Q Q G  
Sbjct: 173 GRPRGALISQGNLLIAQSSLVDAWR--LTEAD-VNLGMLPLFHVTGLGLMLTLQ-QAGGA 228
Query: 264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323
            V   KFD   A R IE ++VTV     P++  +   +   +  ++SL+ V     P   
Sbjct: 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ--LASLRAVTGLDTP--- 283
Query: 324 ELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT 383
           E +E  +   P AT F   +G +ET   +S   P     R  SAG  +      +V  + 
Sbjct: 284 ETIERFEATCPNAT-FWATFGQSETSG-LSTFAPYR--DRPKSAGRPLFWRTVAVVDAED 339
Query: 384 LKPLPPNQLGEIWVRGPNVTPGIVYINFFVFT--LFLWGCEHTDSFIR 429
            +PLPP ++GEI +RGP V  G  Y N    T   F  G  HT    R
Sbjct: 340 -RPLPPGEVGEIVLRGPTVFKG--YWNNAAATQHAFRNGWHHTGDMGR 384

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 171/402 (42%), Gaps = 18/402 (4%)
Query: 13  RSLRPPLVLPSDPS--FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHS 70
           ++  PP      P   F+   +LFR + + + K A ID     S ++ + +    + + +
Sbjct: 7   KAANPPAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTG--STTYGELEERARRFASA 64
Query: 71  FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130
            R LG+  ++ +L+   +++  P+ FLG +  G +   AN + T ++    +  S+ + V
Sbjct: 65  LRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAV 124
Query: 131 ITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVK 190
           I    L   V      A   G +                 F +LI+ +            
Sbjct: 125 IASGALVQNVTQALESAEHDGCQ-LIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCD 183
Query: 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL 250
             D A  LYSSG+TG  KG + TH N    + + +     + E D VV     +F  +GL
Sbjct: 184 --DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND-VVFSAAKLFFAYGL 240
Query: 251 SVILYDQLQKGNCVVSMGKFDIEMALRA-IEKYRVTVWWVVPPIIL-ALAKNSLVRKFDI 308
              L   L  G   + M +     A+ A + ++R TV++ VP +    L   +L  + D+
Sbjct: 241 GNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADV 300
Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAG 368
            ++++  S    L +E+ E    +  G  I   G G TE    I L N   G    G+ G
Sbjct: 301 -AIRICTSAGEALPREIGERFTAHF-GCEILD-GIGSTEMLH-IFLSN-RAGAVEYGTTG 355
Query: 369 TLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
             V G E ++   +    +P  ++G+++++GP+    ++Y N
Sbjct: 356 RPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSA--AVMYWN 394

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 161/382 (42%), Gaps = 28/382 (7%)
Query: 32  FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
            L   +A Y  ++A+   ++    S+ +  +   +++  F+ LGI +KD V++  PN   
Sbjct: 30  LLRDRAAKYGDRIAITCGNT--HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE 87
Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLG 151
           F      +  +GA+   A P +  SE++   + +     I +P   D     +  ++   
Sbjct: 88  FFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI-IP---DAYSGFDYRSLARQ 143
Query: 152 SKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVI 211
            +                 F  L +L      +P+V  K +D A L  S G+TG+SK + 
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV--KSSDVAFLQLSGGSTGLSKLIP 201
Query: 212 LTHKNFIAASLMISAHQELVGELDH--VVLCVLPMFHVFGLSV-----ILYDQLQKGNCV 264
            TH ++I  SL  S     V  LDH  V L  LP  H + LS      +LY     G  V
Sbjct: 202 RTHDDYI-YSLKRSVE---VCWLDHSTVYLAALPXAHNYPLSSPGVLGVLY----AGGRV 253
Query: 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKE 324
           V       + A   IE+ +VT+  +VPP+       +  R+ D+SSL+++  G A    E
Sbjct: 254 VLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAE 313
Query: 325 LMEDCQKNIPGATIFQVGYGMTETCAPIS-LENPLVGVRRSGSAGTLVAGVEAQIVSVDT 383
                 K + G T+ QV +G  E     + L++P   +    + G   +  +   V  D 
Sbjct: 314 AARRV-KAVFGCTLQQV-FGXAEGLVNYTRLDDPEEII--VNTQGKPXSPYDESRVWDDH 369
Query: 384 LKPLPPNQLGEIWVRGPNVTPG 405
            + + P + G +  RGP    G
Sbjct: 370 DRDVKPGETGHLLTRGPYTIRG 391

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 164/397 (41%), Gaps = 30/397 (7%)
Query: 24  DPSFSMVHFLFRNSASYSSKLALIDADSDE--SLSFSQFKSIVIKVSHSFRHLGITKKDV 81
           D   ++  FL R +A +  K  +    + E    ++++      ++    R LG+   D 
Sbjct: 15  DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDR 74
Query: 82  VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141
           V     N       +  V  +GA+  TANP  +  E++  +  +  K+++  P L   V+
Sbjct: 75  VATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134
Query: 142 DLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSS 201
            +         +                 +    E  G   D   V V +  A  + Y++
Sbjct: 135 AIR-------GELKTVQHFVVMDEKAPEGYLAYEEALGEEAD--PVRVPERAACGMAYTT 185
Query: 202 GTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261
           GTTG+ KGV+ +H+  +  SL  S           VVL V+PMFHV    +     L   
Sbjct: 186 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 245
Query: 262 NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLK--LVGSGAA 319
             V+   + D    +   +   VT    VP + LALA         + +L+  +VG  AA
Sbjct: 246 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 305
Query: 320 PLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAG---TLVAGVEA 376
           P  + L+   ++   G  + Q GYG+TET +P+ ++N +     S S     TL A    
Sbjct: 306 P--RSLIARFERM--GVEVRQ-GYGLTET-SPVVVQNFVKSHLESLSEEEKLTLKAKTGL 359
Query: 377 QI------VSVDTLKPLPPN--QLGEIWVRGPNVTPG 405
            I      V+ +  +P+P +   LGE+ ++GP +T G
Sbjct: 360 PIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 396

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 132/311 (42%), Gaps = 24/311 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
             + ALA  +        + SL+ V    A +   ++E   +++PG  +   GYG TE  
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVN--GYGTTEAM 310
Query: 350 APISLENPLVG 360
             + +  P  G
Sbjct: 311 NSLYMRQPKTG 321

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
             + ALA  +        + SL+ V    A +   ++E   +++PG  +    YG TE  
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVN--AYGTTEAM 310
Query: 350 APISLENPLVG 360
             + +  P  G
Sbjct: 311 NSLYMRQPKTG 321

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
             + ALA  +        + SL+ V    A +   ++E   +++PG  +    YG TE  
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--YGTTEAM 310
Query: 350 APISLENPLVG 360
             + +  P  G
Sbjct: 311 NSLYMRQPKTG 321

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
             + ALA  +        + SL+ V    A +   ++E   +++PG  +    YG TE  
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--YGTTEAM 310
Query: 350 APISLENPLVG 360
             + +  P  G
Sbjct: 311 NSLYMRQPKTG 321

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 131/311 (42%), Gaps = 24/311 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K    ++   V  +  +V D    +   GS                    DL
Sbjct: 90  SAELAELIKRG--EMTAAVIAVGRQVADAIFQS---GSG------------ARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L +S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL ++P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
             + ALA  +        + SL+ V    A +   ++E   +++PG  +    YG TE  
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI--YGTTEAM 310
Query: 350 APISLENPLVG 360
             + +  P  G
Sbjct: 311 NSLYMRQPKTG 321

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 174/447 (38%), Gaps = 68/447 (15%)
Query: 26  SFSMVHFLFRNSASYSSKLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVV 82
           ++ +V    R+S     KLA+I   D  +++  +F   K    K ++ F   GI K D V
Sbjct: 58  AYDVVDVYARDSPE---KLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYV 114
Query: 83  LIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142
           ++   +   F  C LG+  +GAIA  A  +    ++  +++ +  K+++ + E  D  + 
Sbjct: 115 MLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAED-DVPEQ 173
Query: 143 LNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIP--DVSVKQTDAAALLYS 200
           ++      G                   F   +E S  + + P  +VS K  D   + +S
Sbjct: 174 VDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFS 233
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAH--QELVGELDHVVL-------CVLPMFH---VF 248
           SGT G  K  ++ H N      +++A   Q +  +  H  +       CV    +   + 
Sbjct: 234 SGTAGFPK--MVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA 291
Query: 249 GLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI 308
           G +V +YD            +F+ +  L    KY VT +   P I   L K  L   ++ 
Sbjct: 292 GCAVFVYD----------YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSH-YNF 340
Query: 309 SSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC-----------APISLENP 357
           S+LK       PL  E+     +   G  + + G+G TET             P S+  P
Sbjct: 341 STLKYAVVAGEPLNPEVFNRFLE-FTGIKLME-GFGQTETVVTIATFPWMEPKPGSIGKP 398
Query: 358 LVGVR-----RSGSAGTLVAGVEAQIVSVDTLKPLP----------PNQLGEIWVRGPNV 402
             G +     R G    +  G E +IV ++T++  P          P +  E W  G   
Sbjct: 399 TPGYKIELMDRDGRLCEV--GEEGEIV-INTMEGKPVGLFVHYGKDPERTEETWHDGYYH 455
Query: 403 TPGIVYINFFVFTLFLWGCEHTDSFIR 429
           T  + +++      +LW     D  I+
Sbjct: 456 TGDMAWMD---EDGYLWFVGRADDIIK 479

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 128/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++ ++ DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 146/382 (38%), Gaps = 48/382 (12%)
Query: 39  SYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG 98
           S+   LA+I  +    LS+ +   +   ++      G+ K D  L+  PN   F I F  
Sbjct: 42  SHPHSLAIICGE--RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99
Query: 99  VIAIGAIASTANPVYTVSELSKQVKDSNPKLVI--------TVPELWDKVKDLNL-PAVL 149
           ++  G +   A   +   EL+  +K   PKL+I        +  +  D + D+NL P ++
Sbjct: 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEII 159
Query: 150 LGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLY-SSGTTGVSK 208
           L                      D IE         D S    D  A    S G+TG  K
Sbjct: 160 L----------MLNHQATDFGLLDWIETPAET--FVDFSSTPADEVAFFQLSGGSTGTPK 207
Query: 209 GVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVS 266
            +  TH ++      + A  E+ G   +  +LC LP  H F LS       L  G CVV 
Sbjct: 208 LIPRTHNDY---DYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVM 264
Query: 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
               +       I++++V +  +VP  ++   + +   K  I SLKL+  G A   + L 
Sbjct: 265 APNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLA 324
Query: 327 EDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD---- 382
               + +    + QV +GM E          LV   R   +   +   + + +S D    
Sbjct: 325 RQVPE-VLNCKLQQV-FGMAEG---------LVNYTRLDDSDEQIFTTQGRPISSDDEIK 373
Query: 383 ----TLKPLPPNQLGEIWVRGP 400
                 + +P  ++G +  RGP
Sbjct: 374 IVDEQYREVPEGEIGMLATRGP 395

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 127/307 (41%), Gaps = 26/307 (8%)
Query: 48  DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107
           D    + +S+ +    V + +++   LGI K DVV I+ P      +  L    IGA+ S
Sbjct: 101 DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS 160
Query: 108 TANPVYTVSELSKQVKDSNPKLVITVPE-------------LWDKVKDLNLPAVLLGSKD 154
                ++   ++  + DS+ +LVIT  E             + D +K+ N+ +V      
Sbjct: 161 VIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVL 220
Query: 155 XXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTH 214
                           + DLIE   S    P+ ++   D   +LY+SG+TG  KGV+ T 
Sbjct: 221 KRTGSDIDWQEGRDLWWRDLIE-KASPEHQPE-AMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 215 KNFI--AASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFD 271
             ++  AA+          G+   +  C   +  V G S +LY  L  G   +   G  +
Sbjct: 279 GGYLVYAATTFKYVFDYHPGD---IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPN 335
Query: 272 IEMALR---AIEKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                R    ++K++V + +  P  I AL    +  +   D SSL+++GS   P+  E  
Sbjct: 336 WPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAW 395
Query: 327 EDCQKNI 333
           E   K I
Sbjct: 396 EWYWKKI 402

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 122/311 (39%), Gaps = 24/311 (7%)
Query: 55  LSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYT 114
           L+ ++ ++ V  V+      G+  +  V + APNS    I  L +  +GA+ +  NP   
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 115 VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXXFHDL 174
            +EL++ +K                 +     AV+   +                   DL
Sbjct: 90  SAELAELIK-----------------RGEXTAAVIAVGRQVADAIFQSGSGARIIFLGDL 132
Query: 175 IELSGSVTDIPDVSVKQTDAAA---LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV 231
           +      +  P +   Q + A    + Y+SGTTG+ K  I+  +   +  L  S    L 
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLR 192
Query: 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVP 291
               +VVL + P++HV G   +L   L      V + +F    AL+ +++ +VT  +  P
Sbjct: 193 HGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252
Query: 292 PIILALAKNSLV--RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC 349
             + ALA  +        + SL+ V    A     ++E   +++PG  +    YG TE  
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI--YGTTEAX 310
Query: 350 APISLENPLVG 360
             +    P  G
Sbjct: 311 NSLYXRQPKTG 321

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 145/360 (40%), Gaps = 34/360 (9%)
Query: 54  SLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV 112
           S+++ +    V +V+    + +G+ K D V ++ P      I  L +  IGAI S     
Sbjct: 113 SITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAG 172
Query: 113 YTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV----LLGSKDXXXXXXXXXXXXXX 168
           ++ + L  ++ D + K+VIT  E     K +    +    L  +                
Sbjct: 173 FSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS 232
Query: 169 XXFHDLIELSGSV------TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASL 222
             FH   +L  +       T  P   V   D   LLY+SG+TG  KGV  +   ++  +L
Sbjct: 233 VAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGAL 292
Query: 223 M-----ISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV----SMGKFDIE 273
           +        HQE       V      +  + G + ++Y  L  G   +    +    +  
Sbjct: 293 LTMRYTFDTHQE------DVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYS 346
Query: 274 MALRAIEKYRVTVWWVVPPI--ILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQK 331
                I++++VT ++V P    +L  A +S +    + SL+ +GS   P+  E+ E   +
Sbjct: 347 RYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSE 406
Query: 332 NIPGATIFQVG-YGMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPL 387
            I    I  V  Y  TE+ +   L  PL G     + GSA     G++A ++  +T + L
Sbjct: 407 KIGKNEIPIVDTYWQTESGS--HLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 464

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 154/411 (37%), Gaps = 81/411 (19%)
Query: 46  LIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKD-VVLIFAPNSIHFPI--CFLGVIAI 102
            ++ + +E+ ++ Q       ++ + +  G    D V+L+FAP     P+   FLG +  
Sbjct: 32  FLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPG---LPLIQAFLGCLYA 88
Query: 103 GAIASTANPVYTVSELSKQ---VKDSNPKLVI---------TVPELWDKVKDLNLPAVLL 150
           G IA    P      L K    V +S P +V+         T  EL    K L +PA+ L
Sbjct: 89  GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNTNPKFLKIPAIAL 148
Query: 151 GSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
            S                      IEL+ S +  P  S+K  D A L Y+SG+T   KGV
Sbjct: 149 ES----------------------IELNRSSSWQP-TSIKSNDIAFLQYTSGSTXHPKGV 185
Query: 211 ILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
            ++H N +     +  S H       + ++   LP  H  GL   +   +  G   +   
Sbjct: 186 XVSHHNLLDNLNKIFTSFHX----NDETIIFSWLPPHHDXGLIGCILTPIYGGIQAIXXS 241
Query: 269 KFDIEMA----LRAIEKYRVTVWW---VVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            F         L+ I KY+ T+           +   +       D+SS     +GA P+
Sbjct: 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPV 301
Query: 322 GKELMEDCQKNIPG----ATIFQVGYGMTE-----------------TCAPISLENPLVG 360
            +E  E   +           F   YG+ E                 T A    ++  V 
Sbjct: 302 REETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVH 361
Query: 361 VRRSGSAGT--LVAG----VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
                S G+  LV+      E +I+  DTL P   +Q+GEIWV+  +V  G
Sbjct: 362 FADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKG 412

>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 155/396 (39%), Gaps = 56/396 (14%)
Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           P+ + VH LF   A+ +     +  ++DE L++        +++H    LG+    +V +
Sbjct: 72  PAGACVHELFEAQAARAPDAVALLHEADE-LTYGALNERANRLAHRLVGLGVAPGTLVGV 130
Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
                    +  L V+  G   +  +P + V  L+  ++D+   L++T   L  ++    
Sbjct: 131 HLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTT 190
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD----VSVKQTDAAALLYS 200
                                        L     + +D P       V   D A ++++
Sbjct: 191 T----------------------------LYVEDEAASDAPAGNLATGVGPEDVACVMFT 222
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQL 258
           SG+TG  KGV+  H+      L     Q+  G   D V L   P+ +  FGL   L+  L
Sbjct: 223 SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLE--LFGAL 276
Query: 259 QKG-NCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLV 314
             G  CV+  G+    + +   + ++ VT+  +   +      N LV +       ++  
Sbjct: 277 LFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLF-----NFLVDEVPEAFEGVRYA 331
Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSA---GTLV 371
            +G  P     +   +++ P A     GYG  E+    +  + +V    SG+A   G  +
Sbjct: 332 ITGGEPASVPHVAKARRDHP-ALRLGNGYGPAESMG-FTTHHAVVAGDLSGTALPIGVPL 389
Query: 372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV 407
           AG  A ++  D LKP     LGE++V G  +  G V
Sbjct: 390 AGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYV 424

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 85/396 (21%), Positives = 155/396 (39%), Gaps = 56/396 (14%)
Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           P+ + VH LF   A+ +     +  ++DE L++        +++H    LG+    +V +
Sbjct: 72  PAGACVHELFEAQAARAPDAVALLHEADE-LTYGALNERANRLAHRLVGLGVAPGTLVGV 130
Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
                    +  L V+  G   +  +P + V  L+  ++D+   L++T   L  ++    
Sbjct: 131 HLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTT 190
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIELSGSVTDIPD----VSVKQTDAAALLYS 200
                                        L     + +D P       V   D A ++++
Sbjct: 191 T----------------------------LYVEDEAASDAPAGNLATGVGPEDVACVMFT 222
Query: 201 SGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQL 258
           SG+TG  KGV+  H+      L     Q+  G   D V L   P+ +  FGL   L+  L
Sbjct: 223 SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLE--LFGAL 276
Query: 259 QKG-NCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLV 314
             G  CV+  G+    + +   + ++ VT+  +   +      N LV +       ++  
Sbjct: 277 LFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLF-----NFLVDEVPEAFEGVRYA 331
Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSA---GTLV 371
            +G  P     +   +++ P A     GYG  E+    +  + +V    SG+A   G  +
Sbjct: 332 ITGGEPASVPHVAKARRDHP-ALRLGNGYGPAESMG-FTTHHAVVAGDLSGTALPIGVPL 389
Query: 372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV 407
           AG  A ++  D LKP     LGE++V G  +  G V
Sbjct: 390 AGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYV 424

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 20/166 (12%)
Query: 51  SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN 110
           S ++LS+ +      +++   +  G  K  VV ++   S+   I  LGV+  GA     +
Sbjct: 486 SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVD 545
Query: 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDXXXXXXXXXXXXXXXX 170
           P      +S  + DS    ++T  E+ ++  +L      L                    
Sbjct: 546 PKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTL-------------------F 586
Query: 171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKN 216
             D        +D P  ++   D A ++Y+SGTTG  KG I TH N
Sbjct: 587 IDDQTRFEEQASD-PATAIDPNDPAYIMYTSGTTGKPKGNITTHAN 631

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 186 DVSVKQ---TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL 242
           DV++++    D A L Y+SG+T   +GVI+TH+  + A+L   +H  +        +  L
Sbjct: 166 DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHRE-VXANLRAISHDGIKLRPGDRCVSWL 224
Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILALA 298
           P +H  GL   L   +     V  +   D        L+ I K R TV  V PP    L 
Sbjct: 225 PFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTV-SVAPPFGYELC 283
Query: 299 KNSLVRK----FDISSLKLVGSGAAPLGKELME---DC--QKNIPGATIFQVGYGMTETC 349
           +  +  K     D+S  ++ G GA P+  E +    +C  Q N    T F   YG+ E  
Sbjct: 284 QRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKT-FXPCYGLAENA 342
Query: 350 APISLENPLVGV 361
             +S  +   GV
Sbjct: 343 LAVSFSDEASGV 354

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 144/393 (36%), Gaps = 52/393 (13%)
Query: 29  MVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           +   L R++AS S  +A+ID +    LS+ +       ++ S R  GI   +  L+   N
Sbjct: 29  LTDILTRHAASDS--IAVIDGE--RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGN 84
Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
                I F  ++ +G     A   +  SEL+       P L+I      D+   L     
Sbjct: 85  VAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIA-----DRQHALFSGDD 139
Query: 149 LLGSKDXXXXXXXXXXXXXXXXFHDLIE-LSGSVTDIPDVSVKQTDAAALLYSSGTTGVS 207
            L +                   H+L + ++    D         + A    S GTTG  
Sbjct: 140 FLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTP 199
Query: 208 KGVILTHKNF---IAASLMISAHQELVGELDHVVLCVLPMFHVFGLS------VILYDQL 258
           K +  TH ++   +  S+ I    +         LC +P  H + +S      V L    
Sbjct: 200 KLIPRTHNDYYYSVRRSVEICQFTQQT-----RYLCAIPAAHNYAMSSPGSLGVFL---- 250
Query: 259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR---KFDISSLKLVG 315
             G  VV        +    IEK++V V  +VPP + +L   +L+    +  ++SLKL+ 
Sbjct: 251 -AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-SLWLQALIEGESRAQLASLKLLQ 308
Query: 316 SGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVE 375
            G A L   L       I G  + QV +GM E          LV   R   +   +   +
Sbjct: 309 VGGARLSATLAARIPAEI-GCQLQQV-FGMAEG---------LVNYTRLDDSAEKIIHTQ 357
Query: 376 AQIVSVDTL--------KPLPPNQLGEIWVRGP 400
              +  D           PLP  ++G +  RGP
Sbjct: 358 GYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGP 390

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 21/237 (8%)
Query: 179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV 238
           GSV+   D  VK+ +   ++Y+SG+TG  KGV ++  N  + +  I A   + G    + 
Sbjct: 132 GSVSQ--DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSG--GKIF 187
Query: 239 LCVLPMFHVFGLSVI-LYDQLQKG---NCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
           L   P    F LSV+ LY  LQ G   +CV        ++    ++K  + VW   P  +
Sbjct: 188 LNQAPF--SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFV 245
Query: 295 -LALAKNSLVRKFDISSLKLVGSGA---APLGKELMEDCQKNIPGATIFQVGYGMTE-TC 349
            + L      +     +   +  G      + K L+E      P A IF   YG TE T 
Sbjct: 246 QMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLE----RFPKAKIFNT-YGPTEATV 300
Query: 350 APISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL-KPLPPNQLGEIWVRGPNVTPG 405
           A  S+E     + RS S     A  +  I  +D   +PLP  + GEI + GP+V+ G
Sbjct: 301 AVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRG 357

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 75/337 (22%), Positives = 131/337 (38%), Gaps = 51/337 (15%)
Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
           P    +H LF    S       I  + +E L++ +      +++  F   GI K  +V I
Sbjct: 36  PRDKTIHQLFEEQVSKRPNNVAIVCE-NEQLTYHELNVKANQLARIFIEKGIGKDTLVGI 94
Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN 144
               SI   I  L V+  G      +  Y    +   + DS  ++++T   L   + ++ 
Sbjct: 95  MMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ 154
Query: 145 LPAVLLGSKDXXXXXXXXXXXXXXXXFHDLIEL-SGSVTDIPDVSVKQTDAAALLYSSGT 203
               +   ++                  D I++  G+   +P    K TD A ++Y+SGT
Sbjct: 155 FNGQVEIFEE------------------DTIKIREGTNLHVPS---KSTDLAYVIYTSGT 193
Query: 204 TGVSKGVILTHKN------FIAASLMISAHQELVGELDHVVL--CVLPMFHVFGLSVILY 255
           TG  KG +L HK       F   SL ++  ++ +G+   +     V  MF        LY
Sbjct: 194 TGNPKGTMLEHKGISNLKVFFENSLNVT-EKDRIGQFASISFDASVWEMFMALLTGASLY 252
Query: 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             L+  + +    KF+     + I +  +TV  + P  ++ L      R   I +L   G
Sbjct: 253 IILK--DTINDFVKFE-----QYINQKEITVITLPPTYVVHLDPE---RILSIQTLITAG 302
Query: 316 SGAAPLGKELMEDCQKNIPGATIFQVGYGMTET--CA 350
           S  +P    L+   ++ +     +   YG TET  CA
Sbjct: 303 SATSP---SLVNKWKEKV----TYINAYGPTETTICA 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	436
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-157
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-156
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-149
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-148
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-140
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-102
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-97
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	6e-96
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	3e-95
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	7e-91
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	5e-87
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-84
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-79
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-78
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-78
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	5e-57
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-48
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-45
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-45
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-43
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	7e-39
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-31
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-15
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-15
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-15
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	6e-15
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	1e-13
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-12
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	3e-12
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	1e-10
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	1e-07
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	1e-07
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	1e-07
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  455 bits (1173), Expect = e-157
 Identities = 139/412 (33%), Positives = 221/412 (53%), Gaps = 29/412 (7%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVS 68
           + I+RS  P + +P +    +  ++  N +++SSK  LI+  + +  +++  +    +V+
Sbjct: 6   EFIFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVA 63

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128
                +GI + DV+++F P+S  F + FLG    GAI + ANP  T +EL+K  K S  K
Sbjct: 64  SGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAK 123

Query: 129 LVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           L+IT    ++KVKD     ++  + + S                + F +L +   +  + 
Sbjct: 124 LLITQACYYEKVKDFARESDVKVMCVDSA-----------PDGCLHFSELTQADEN--EA 170

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL--DHVVLCVL 242
           P V +   D  AL YSSGTTG+ KGV+LTHK  I +                + V+LCVL
Sbjct: 171 PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVL 230

Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL 302
           PMFH++ L+ I+   L+ G  ++ M KF+I   L  IEKY+V++  VVPP+++++AK+  
Sbjct: 231 PMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD 290

Query: 303 VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG-- 360
           + K D+SSL+++ SG APLGKEL +  +   P A + Q GYGMTE   P+          
Sbjct: 291 LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ-GYGMTEAG-PVLAMCLAFAKE 348

Query: 361 --VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
               + G+ GT+V   E +IV  +T   LP NQ GEI +RG  +  G  Y+N
Sbjct: 349 PFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG--YLN 398

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  466 bits (1200), Expect = e-156
 Identities = 148/420 (35%), Positives = 230/420 (54%), Gaps = 23/420 (5%)

Query: 2   EKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFK 61
           + +    D I+RS  P + +P+    S+  ++F+N + +++K  LI+  +    ++S   
Sbjct: 38  QSNNNNSDVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVH 95

Query: 62  SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121
            I  +++ +F  LG+ + DVV++  PN   F + FL     GA A+ ANP +T +E++KQ
Sbjct: 96  VISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155

Query: 122 VKDSNPKLVITVPELWDKVKDL----NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 177
            K SN KL+IT     DK+K L     +  V +   + V            + F +L + 
Sbjct: 156 AKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIP------EGCLRFTELTQS 209

Query: 178 SGSVTD-IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISA--HQELVGEL 234
           +   ++ I  V +   D  AL YSSGTTG+ KGV+LTHK  + +        +  L    
Sbjct: 210 TTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHS 269

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
           D V+LCVLPMFH++ L+ I+   L+ G  ++ M KF+I + L  I++ +VTV  +VPPI+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 329

Query: 295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISL 354
           LA+AK+S   K+D+SS+++V SGAAPLGKEL +      P A + Q GYGMTE   P+  
Sbjct: 330 LAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ-GYGMTEAG-PVLA 387

Query: 355 ENPLVG----VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            +          +SG+ GT+V   E +IV  DT   L  NQ GEI +RG  +  G  Y+N
Sbjct: 388 MSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKG--YLN 445

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  435 bits (1120), Expect = e-149
 Identities = 110/416 (26%), Positives = 191/416 (45%), Gaps = 19/416 (4%)

Query: 1   MEKSGYGRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQF 60
           ME +      I +   P   L    +   +H   +  A     +A  DA  + +++++++
Sbjct: 1   MEDA----KNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEY 56

Query: 61  KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120
             + ++++ + +  G+     +++ + NS+ F +  LG + IG   + AN +Y   EL  
Sbjct: 57  FEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLN 116

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE---- 176
            +  S P +V    +   K+ ++      L    K+      +      S +  +     
Sbjct: 117 SMNISQPTVVFVSKKGLQKILNV---QKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP 173

Query: 177 -LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGEL- 234
                   +P+   +    A ++ SSG+TG+ KGV L H+                  + 
Sbjct: 174 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP 233

Query: 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPII 294
           D  +L V+P  H FG+   L   L  G  VV M +F+ E+ LR+++ Y++    +VP + 
Sbjct: 234 DTAILSVVPFHHGFGMFTTLG-YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292

Query: 295 LALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISL 354
              AK++L+ K+D+S+L  + SG APL KE+ E   K      I Q GYG+TET     L
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQ-GYGLTETT-SAIL 350

Query: 355 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
             P  G  + G+ G +V   EA++V +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 351 ITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVN 403

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  430 bits (1109), Expect = e-148
 Identities = 103/410 (25%), Positives = 180/410 (43%), Gaps = 20/410 (4%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYS--SKLALIDADSDESLSFSQFKSIVIK 66
           + I    +P   +           L +    Y+    +A  +A +    S++++      
Sbjct: 8   ENIVVGPKPFYPIEEGS---AGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCC 64

Query: 67  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 126
           +  + ++ G+     + + + N   F I  +  + IG   +  N +YT+ EL   +  S 
Sbjct: 65  LGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISK 124

Query: 127 PKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE----LSGSVT 182
           P +V +  +  DKV  +      + +   +                  I+         +
Sbjct: 125 PTIVFSSKKGLDKVITV---QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQAS 181

Query: 183 DIPDVSV-KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLC 240
               V V ++   A ++ SSG+TG+ KGV LTH+N +                    VL 
Sbjct: 182 SFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLT 241

Query: 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
           V+P  H FG+   L   L  G  VV + KFD E  L+ ++ Y+ T   +VP +   L K+
Sbjct: 242 VVPFHHGFGMFTTLG-YLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS 300

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG 360
            L+ K+D+S+L  + SG APL KE+ E   +      + Q GYG+TET     +  P  G
Sbjct: 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQ-GYGLTETT-SAIIITPE-G 357

Query: 361 VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
             + G++G +V   +A+++ +DT K L PN+ GE+ V+GP +  G  Y+N
Sbjct: 358 DDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKG--YVN 405

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  410 bits (1056), Expect = e-140
 Identities = 107/416 (25%), Positives = 186/416 (44%), Gaps = 34/416 (8%)

Query: 9   DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADS------DESLSFSQFKS 62
           +  Y+   P L  P     S+   +   +  +  K A+I A+        ES++F +   
Sbjct: 4   ELKYKIGFPSLYYPK---ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICE 60

Query: 63  IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122
           +  K++      G+ K + V +  PNSI + +    +  + A     NP+Y   EL   +
Sbjct: 61  VTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHIL 120

Query: 123 KDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVT 182
            DS    ++    L++  K +          +K     +     ++ S  ++++      
Sbjct: 121 NDSEATTLVVHSMLYENFKPV---------LEKTGVERVFVVGGEVNSLSEVMDSGSEDF 171

Query: 183 DIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVL 242
           +   V+  + D A + Y+ GTTG+ KGV+LTH N  A +L ++    L       ++  +
Sbjct: 172 ENVKVNP-EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH--MDTIVGCM 228

Query: 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS- 301
           PMFH     ++    +  GN  V MG F+ EM    IEKY+ T  W VPP +  L     
Sbjct: 229 PMFHSAEFGLVNL-MVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLE 287

Query: 302 -LVRKFDISSLKLVGSGAAPLGKELMEDCQK------NIPGATIFQVGYGMTETCAPISL 354
              + +D S LK+  +GA P+   L+E   K      N P     Q  +GMTE C P+  
Sbjct: 288 SSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQ-IWGMTEAC-PMVT 345

Query: 355 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            NP + + +S + G  ++ +E +++S++  + L   + GEI +RGPN+  G  Y  
Sbjct: 346 TNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG--YWK 399

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  311 bits (800), Expect = e-102
 Identities = 104/380 (27%), Positives = 166/380 (43%), Gaps = 23/380 (6%)

Query: 29  MVHFLF---RNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85
           M   LF    +      KLA+  A   + +S+++  +   +V++     G+   D V   
Sbjct: 1   MNANLFARLFDKLDDPHKLAIETAA-GDKISYAELVARAGRVANVLVARGLQVGDRVAAQ 59

Query: 86  APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL 145
              S+   + +L  +  G +    N  YT+ EL   + D+ PK+V+  P   D +  +  
Sbjct: 60  TEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAI-- 117

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTG 205
                    KV ++          S  D    +G+      +     D AA+LY+SGTTG
Sbjct: 118 -------AAKVGATVETLGPDGRGSLTDA--AAGASEAFATIDRGADDLAAILYTSGTTG 168

Query: 206 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265
            SKG +L+H N  + SL +  +       D V++  LP++H  GL V     L     ++
Sbjct: 169 RSKGAMLSHDNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMI 226

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
            + KFD +  L  +   R TV   VP     L ++  + K     ++L  SG+APL  + 
Sbjct: 227 FLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADT 284

Query: 326 MEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK 385
             +      G  + +  YGMTET    S  NP  G R  G+ G  + GV A++   +T K
Sbjct: 285 HREWSA-KTGHAVLE-RYGMTETNMNTS--NPYDGDRVPGAVGPALPGVSARVTDPETGK 340

Query: 386 PLPPNQLGEIWVRGPNVTPG 405
            LP   +G I V+GPNV  G
Sbjct: 341 ELPRGDIGMIEVKGPNVFKG 360

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  301 bits (772), Expect = 1e-97
 Identities = 87/389 (22%), Positives = 164/389 (42%), Gaps = 19/389 (4%)

Query: 17  PPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI 76
              V   D   ++   L + +       A ++  +D  ++++Q  ++  + +     LGI
Sbjct: 6   HHHVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGI 65

Query: 77  TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL 136
            K D V +  PNS+ F   F G   +GA+A   N      E+S  + DS  K+VI     
Sbjct: 66  AKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPS 125

Query: 137 WDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAA 196
              +  +         + +    G ++      S  +   L  +  D P V     D   
Sbjct: 126 APVIDAI---------RAQADPPGTVTDWIGADSLAER--LRSAAADEPAVECGGDDNLF 174

Query: 197 LLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD 256
           ++Y+SGTTG  KGV+ TH++  +A+   ++  ++       +L  LPMFHV  L+ +++ 
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRY--RDRLLLPLPMFHVAALTTVIF- 231

Query: 257 QLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS 316
              +G  ++SM +FD       I + RV +   VP I+  + +     + D    +   +
Sbjct: 232 SAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFIT 291

Query: 317 GAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEA 376
           G AP+ + L++          + Q GY +TE+C   +L      +R++GSAG      + 
Sbjct: 292 GGAPMPEALIKIYAA--KNIEVVQ-GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDV 348

Query: 377 QIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            +   D        + GE+ ++   +   
Sbjct: 349 AVRGDDG-VIREHGE-GEVVIKSDILLKE 375

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  296 bits (760), Expect = 6e-96
 Identities = 84/385 (21%), Positives = 164/385 (42%), Gaps = 24/385 (6%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
           S+  +L++ +      +A+ D    ES ++         ++     L   ++  V ++  
Sbjct: 2   SLDFWLYKQAQQNGHHIAITDGQ--ESYTYQNLYCEASLLAK---RLKAYQQSRVGLYID 56

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA 147
           NSI   I            +  N   T +E++ Q++  + +L+     L  +   +    
Sbjct: 57  NSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLD 116

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIEL--SGSVTDIPDVSVKQTDAAALLYSSGTTG 205
            +  +   ++++GL+  +  I        +    S ++I + S    D A+++++SGTTG
Sbjct: 117 DIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTG 176

Query: 206 VSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265
             K V  T +N  A+++            D   L VLP++H+ GLSV+L   + +G  V 
Sbjct: 177 PQKAVPQTFRNHYASAIGCKESLGFDR--DTNWLSVLPIYHISGLSVLLR-AVIEGFTVR 233

Query: 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKEL 325
            + KF+ E  L  I+  R+T   +VP  +  L +       +  +L+ +  G A L   +
Sbjct: 234 IVDKFNAEQILTMIKNERITHISLVPQTLNWLMQ---QGLHEPYNLQKILLGGAKLSATM 290

Query: 326 MEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLK 385
           +E   +      I+   +GMTETC+      P +   R  + G   A V+ +I + +   
Sbjct: 291 IETALQY--NLPIYN-SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN--- 344

Query: 386 PLPPNQLGEIWVRGPNVTPGIVYIN 410
                  GE+ ++G NV  G  Y+ 
Sbjct: 345 ---KEGHGELMIKGANVMNG--YLY 364

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  295 bits (757), Expect = 3e-95
 Identities = 87/391 (22%), Positives = 165/391 (42%), Gaps = 13/391 (3%)

Query: 17  PPLVLPSDPS-FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLG 75
           P   + + P+ F+   +LFR + + + K A ID     S ++ + +    + + + R LG
Sbjct: 12  PAATVEAPPALFNFAAYLFRLNETRAGKTAYIDDT--GSTTYGELEERARRFASALRTLG 69

Query: 76  ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135
           +  ++ +L+   +++  P+ FLG +  G +   AN + T ++    +  S+ + VI    
Sbjct: 70  VHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGA 129

Query: 136 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
           L   V      A   G +  + S    S       F +L  +  +       +    D A
Sbjct: 130 LVQNVTQALESAEHDGCQ-LIVSQPRESEPRLAPLFEEL--IDAAAPAAKAAATGCDDIA 186

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
             LYSSG+TG  KG + TH N    + + +     + E D VV     +F  +GL   L 
Sbjct: 187 FWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEND-VVFSAAKLFFAYGLGNGLT 245

Query: 256 DQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
             L  G   + M  +   +     + ++R TV++ VP +   +  +  +      ++++ 
Sbjct: 246 FPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRIC 305

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGV 374
            S    L +E+ E    +  G  I   G G TE    I L N   G    G+ G  V G 
Sbjct: 306 TSAGEALPREIGERFTAHF-GCEILD-GIGSTEM-LHIFLSNRA-GAVEYGTTGRPVPGY 361

Query: 375 EAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
           E ++   +    +P  ++G+++++GP+    
Sbjct: 362 EIELRD-EAGHAVPDGEVGDLYIKGPSAAVM 391

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  283 bits (726), Expect = 7e-91
 Identities = 87/383 (22%), Positives = 146/383 (38%), Gaps = 28/383 (7%)

Query: 25  PSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI 84
             F++     RN+A +  + A +       L+   + +   +++      G+   D V I
Sbjct: 4   HDFTLADVYRRNAALFPDRTAFMVDG--VRLTHRDYLARAERLASGLLRDGVHTGDRVAI 61

Query: 85  FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL- 143
            + N          V  IGAI    N      E++  + D  P +V+   +  D V  + 
Sbjct: 62  LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL 121

Query: 144 -NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
            +L  V              +       F    +L+   T          D   +++++ 
Sbjct: 122 PSLGGVKK----------AYAIGDGSGPFAPFKDLASD-TPFSAPEFGAADGFVIIHTAA 170

Query: 203 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGN 262
             G  +G +++  N + A   +     L      V L +LP+FHV GL ++L    Q G 
Sbjct: 171 VGGRPRGALISQGNLLIAQSSLVDAWRLTE--ADVNLGMLPLFHVTGLGLMLT-LQQAGG 227

Query: 263 CVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
             V   KFD   A R IE ++VTV     P++  +          ++SL+ V     P  
Sbjct: 228 ASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ--AAPAQLASLRAVTGLDTPET 285

Query: 323 KELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD 382
            E  E      P AT +   +G +ET    +         R  SAG  +      +V  +
Sbjct: 286 IERFEAT---CPNATFWA-TFGQSETSGLSTF---APYRDRPKSAGRPLFWRTVAVVDAE 338

Query: 383 TLKPLPPNQLGEIWVRGPNVTPG 405
             +PLPP ++GEI +RGP V  G
Sbjct: 339 D-RPLPPGEVGEIVLRGPTVFKG 360

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  273 bits (700), Expect = 5e-87
 Identities = 77/382 (20%), Positives = 142/382 (37%), Gaps = 30/382 (7%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
             L R +       AL        L+ ++ ++ V  V+      G+  +  V + APNS 
Sbjct: 6   EMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA 65

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV--PELWDKVKDLNLPAV 148
              I  L +  +GA+ +  NP    +EL++ +K       +     ++ D +      A 
Sbjct: 66  DVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGAR 125

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
           ++   D V      S                    I D   +    A + Y+SGTTG+ K
Sbjct: 126 IIFLGDLVRDGEPYSYG----------------PPIEDPQREPAQPAFIFYTSGTTGLPK 169

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
             I+  +   +  L +S    L     +VVL ++P++HV G   +L   L      V + 
Sbjct: 170 AAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE 229

Query: 269 KFDIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSLKLVGSGAAPLGKELM 326
           +F    AL+ +++ +VT  +  P  + ALA           + SL+ V    A +   ++
Sbjct: 230 EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVL 289

Query: 327 EDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT--L 384
           E   +++         YG TE               ++G+        E +IV +     
Sbjct: 290 ETVHQHL-PGEKVN-IYGTTEA-MNSLYMRQ----PKTGTEMAPGFFSEVRIVRIGGGVD 342

Query: 385 KPLPPNQLGEIWVRGPN-VTPG 405
           + +   + GE+ V   +    G
Sbjct: 343 EIVANGEEGELIVAASDSAFVG 364

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  267 bits (684), Expect = 1e-84
 Identities = 89/401 (22%), Positives = 158/401 (39%), Gaps = 47/401 (11%)

Query: 12  YRSLRPPLVLPSDPSFSMV--HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSH 69
           +       ++P     S +        + + + + AL     + SL++++  +     + 
Sbjct: 6   HHHHHSSGLVPRGSHMSSLFPALSPAPTGAPADRPALRF--GERSLTYAELAAAAGATAG 63

Query: 70  SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129
                 I     V ++A  ++   +  +  +  G  A   NP     EL+  + DS P L
Sbjct: 64  -----RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSL 118

Query: 130 VITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSV 189
           V+  P       D  LP  L                        +     +   +P+   
Sbjct: 119 VLAPP-------DAELPPALGA-------------------LERVDVDVRARGAVPEDGA 152

Query: 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFG 249
              D A ++Y+SGTTG  KG ++  +        ++   +  G  + V++  LP+FHV G
Sbjct: 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG--EDVLVQGLPLFHVHG 210

Query: 250 LSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKF--- 306
           L + +   L++G  V  +G+F  E A R +     T+ + VP +   +A+          
Sbjct: 211 LVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAK 269

Query: 307 DISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGS 366
            ++  +L+ SG+A L     E       G  + +  YGMTET    S      G  R+G+
Sbjct: 270 ALAGARLLVSGSAALPVHDHERIAA-ATGRRVIE-RYGMTETLMNTS--VRADGEPRAGT 325

Query: 367 AGTLVAGVEAQIVSVDT--LKPLPPNQLGEIWVRGPNVTPG 405
            G  + GVE ++V  D   +  L    +GEI VRGPN+   
Sbjct: 326 VGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTE 366

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  256 bits (657), Expect = 2e-79
 Identities = 78/369 (21%), Positives = 128/369 (34%), Gaps = 20/369 (5%)

Query: 43  KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAI 102
            +A+ID +    LS+ +       ++ S R  GI   +  L+   N     I F  ++ +
Sbjct: 41  SIAVIDGE--RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98

Query: 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSS--SG 160
           G     A   +  SEL+       P L+I   +        +    L     + SS    
Sbjct: 99  GVAPVLALFSHQRSELNAYASQIEPALLIADRQH----ALFSGDDFLNTFVTEHSSIRVV 154

Query: 161 LISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAA 220
            +   S   +  D   ++    D         + A    S GTTG  K +  TH ++  +
Sbjct: 155 QLLNDSGEHNLQDA--INHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYS 212

Query: 221 SLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGKFDIEMALRAI 279
                   +         LC +P  H + +S          G  VV        +    I
Sbjct: 213 VRRSVEICQFTQ--QTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLI 270

Query: 280 EKYRVTVWWVVPPIILAL--AKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT 337
           EK++V V  +VPP +     A      +  ++SLKL+  G A L   L       I G  
Sbjct: 271 EKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQ 329

Query: 338 IFQVGYGMTETCAPISLENPLVGVRRSGSAGT-LVAGVEAQIVSVDTLKPLPPNQLGEIW 396
           + QV +GM E              +   + G  +    E  +   +   PLP  ++G + 
Sbjct: 330 LQQV-FGMAEG-LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEG-NPLPQGEVGRLM 386

Query: 397 VRGPNVTPG 405
            RGP    G
Sbjct: 387 TRGPYTFRG 395

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  252 bits (647), Expect = 1e-78
 Identities = 84/382 (21%), Positives = 146/382 (38%), Gaps = 22/382 (5%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
             L     S+   LA+I  +    LS+ +   +   ++      G+ K D  L+  PN  
Sbjct: 34  RILTVGVQSHPHSLAIICGE--RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVA 91

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLL 150
            F I F  ++  G +   A   +   EL+  +K   PKL+I      +   +      L 
Sbjct: 92  EFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLI-GSRQHEVFSNNQFIDSLH 150

Query: 151 GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
                     +++  +      D IE + + T +   S    + A    S G+TG  K +
Sbjct: 151 DVNLSPEIILMLNHQATDFGLLDWIE-TPAETFVDFSSTPADEVAFFQLSGGSTGTPKLI 209

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK 269
             TH ++  +    +    L    +  +LC LP  H F LS       L  G CVV    
Sbjct: 210 PRTHNDYDYSVRASAEICGLNS--NTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPN 267

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC 329
            +       I++++V +  +VP  ++   + +   K  I SLKL+  G A   + L    
Sbjct: 268 PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQV 327

Query: 330 QKNIPGATIFQVGYGMTE-----TCAPISLENPLVGVRRSGSAGTLVAGV-EAQIVSVDT 383
            + +    + QV +GM E     T    S E      +   + G  ++   E +IV    
Sbjct: 328 PEVL-NCKLQQV-FGMAEGLVNYTRLDDSDE------QIFTTQGRPISSDDEIKIVDEQY 379

Query: 384 LKPLPPNQLGEIWVRGPNVTPG 405
            + +P  ++G +  RGP    G
Sbjct: 380 -REVPEGEIGMLATRGPYTFCG 400

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  252 bits (645), Expect = 2e-78
 Identities = 88/382 (23%), Positives = 156/382 (40%), Gaps = 26/382 (6%)

Query: 31  HFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
             L   +A Y  ++A+   +     S+ +  +   +++  F+ LGI +KD V++  PN  
Sbjct: 29  DLLRDRAAKYGDRIAITCGN--THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIK 86

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLL 150
            F      +  +GA+   A P +  SE++   + +     I      D     +  ++  
Sbjct: 87  EFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIP----DAYSGFDYRSLAR 142

Query: 151 GSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGV 210
             + K+ +   I  + +   F  L +L      +P+V    +D A L  S G+TG+SK +
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKS--SDVAFLQLSGGSTGLSKLI 200

Query: 211 ILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVVSMGK 269
             TH ++I +         L      V L  LPM H + LS   +   L  G  VV    
Sbjct: 201 PRTHDDYIYSLKRSVEVCWLDH--STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS 258

Query: 270 FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC 329
              + A   IE+ +VT+  +VPP+ +     +  R+ D+SSL+++  G A    E     
Sbjct: 259 PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV 318

Query: 330 QKNIPGATIFQVGYGMTE-----TCAPISLENPLVGVRRSGSAGT-LVAGVEAQIVSVDT 383
           +    G T+ QV +GM E     T      E          + G  +    E+++     
Sbjct: 319 KAVF-GCTLQQV-FGMAEGLVNYTRLDDPEE------IIVNTQGKPMSPYDESRVWDDHD 370

Query: 384 LKPLPPNQLGEIWVRGPNVTPG 405
            + + P + G +  RGP    G
Sbjct: 371 -RDVKPGETGHLLTRGPYTIRG 391

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  196 bits (500), Expect = 5e-57
 Identities = 66/382 (17%), Positives = 137/382 (35%), Gaps = 24/382 (6%)

Query: 31  HFLFRNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFA 86
                 +       AL   +        +F +      + ++      G+ + D V +  
Sbjct: 47  WADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVL 106

Query: 87  PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--N 144
           P    + +  LG I  G I          +++  +++ S  K ++   E+  +V  +   
Sbjct: 107 PRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE 166

Query: 145 LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTT 204
            P++    + K+  S         ++F  L+    + T    V     +A+A+ ++SGT+
Sbjct: 167 CPSL----RIKLLVSE--KSCDGWLNFKKLLN--EASTTHHCVETGSQEASAIYFTSGTS 218

Query: 205 GVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCV 264
           G+ K    ++ +    + M +    L  +   ++  +     +  +   L +    G C 
Sbjct: 219 GLPKMAEHSYSSLGLKAKMDAGWTGL--QASDIMWTISDTGWILNILCSLMEPWALGACT 276

Query: 265 VS--MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322
               + KFD  + L+ +  Y +      P +   L +  L   +    L+   +    L 
Sbjct: 277 FVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL-SSYKFPHLQNCVTVGESLL 335

Query: 323 KELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVD 382
            E +E+ +    G  I +  YG TET              + G  GT  +  + QI+   
Sbjct: 336 PETLENWRAQT-GLDIRE-SYGQTETGLTCM--VSKTMKIKPGYMGTAASCYDVQIIDDK 391

Query: 383 TLKPLPPNQLGEIWVRGPNVTP 404
               LPP   G+I +R   + P
Sbjct: 392 G-NVLPPGTEGDIGIRVKPIRP 412

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  173 bits (440), Expect = 2e-48
 Identities = 89/464 (19%), Positives = 160/464 (34%), Gaps = 74/464 (15%)

Query: 14  SLRPPLVLPSDPSFSMVHFLFRNSASYSSKLAL--IDADSDESLSFSQFKSIVIKVSHSF 71
           SL+   +       S+V  +   +    +K +   ++ + +E++++ Q       ++ + 
Sbjct: 2   SLKKEYLQCQ----SLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATL 57

Query: 72  RHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY------TVSELSKQVKDS 125
           +  G    D VL+     +     FLG +  G IA    P+Y       + +  + V +S
Sbjct: 58  QAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAV---PIYPPAQEKLLDKAQRIVTNS 114

Query: 126 NPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185
            P +V+ + +   K     L                       ++   +     S     
Sbjct: 115 KPVIVLMIADHIKKFTADELNTNPKF------------LKIPAIALESIELNRSSSWQPT 162

Query: 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMF 245
            +     D A L Y+SG+T   KGV+++H N +     I     +  +   +    LP  
Sbjct: 163 SIK--SNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHM-NDETIIFSW-LPPH 218

Query: 246 HVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPPIILALA--- 298
           H  GL   +   +  G   + M  F         L+ I KY+ T+    P          
Sbjct: 219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGS-PNFAYDYCVKR 277

Query: 299 -KNSLVRKFDISSLKLVGSGAAPLGKELMED-CQKNIP---GATIFQVGYGMTETCAPIS 353
            +       D+SS     +GA P+ +E ME   Q           F   YG+ E    ++
Sbjct: 278 IREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVT 337

Query: 354 -----------------LENPLVGVRRSGSAGTL------VAGVEAQIVSVDTLKPLPPN 390
                             ++  V      S G+           E +I+  DTL P   +
Sbjct: 338 GGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFD 397

Query: 391 QLGEIWVRGPNVTPGIVYIN-----FFVFTLFLWGCEHTDSFIR 429
           Q+GEIWV+  +V  G  Y N        F   +   E +  ++R
Sbjct: 398 QVGEIWVQSNSVAKG--YWNQPEETRHAFAGKIKDDERSAIYLR 439

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  165 bits (421), Expect = 1e-45
 Identities = 84/392 (21%), Positives = 147/392 (37%), Gaps = 44/392 (11%)

Query: 35  RNSASYSSKLALIDADSD---ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH 91
             +     KLA+I  D     +  +F   K    K ++ F   GI K D V++   +   
Sbjct: 64  VYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD 123

Query: 92  FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE--LWDKVKDL--NLPA 147
           F  C LG+  +GAIA  A  +    ++  +++ +  K+++ + E  + ++V +       
Sbjct: 124 FWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGD 183

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP--DVSVKQTDAAALLYSSGTTG 205
           + L    K    G        + F   +E S  + + P  +VS K  D   + +SSGT G
Sbjct: 184 IPL---KKAKVGG--DVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAG 238

Query: 206 VSKGVILTHKNFIAASLMISAHQ--ELVGEL--DHVVLCV-----LPMFHVFGLSVILYD 256
             K V   +      +  +      +    +  D +   V             +   LY 
Sbjct: 239 FPKMVEHDN------TYPLGHILTAKYWQNVEDDGLHYTVADSGW-----GKCVWGKLYG 287

Query: 257 QLQKGNCVVS--MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
           Q   G  V      +F+ +  L    KY VT +   P I   L K  L   ++ S+LK  
Sbjct: 288 QWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-SHYNFSTLKYA 346

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVR-RSGSAGTLVAG 373
                PL  E+     +   G  + + G+G TET   I+       +  + GS G    G
Sbjct: 347 VVAGEPLNPEVFNRFLEFT-GIKLME-GFGQTETVVTIA---TFPWMEPKPGSIGKPTPG 401

Query: 374 VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 405
            + +++  D  +     + GEI +      P 
Sbjct: 402 YKIELMDRDG-RLCEVGEEGEIVINTMEGKPV 432

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  163 bits (415), Expect = 1e-45
 Identities = 78/443 (17%), Positives = 140/443 (31%), Gaps = 72/443 (16%)

Query: 14  SLRPPLVLPSDPSFSMVHFLFRNSASYSSKLAL--IDADSD-----ESLSFSQFKSIVIK 66
           S   P         S+   L   +       A   +D + D      +L++SQ     + 
Sbjct: 12  SGLVPRGSHMSVR-SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLN 70

Query: 67  VSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY------TVSELSK 120
           V+      G +  D V+I AP  + + + FLG +  G IA    P+       T      
Sbjct: 71  VAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAV---PLSVPQGGVTDERSDS 126

Query: 121 QVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180
            + DS+P  ++T     D V                            +   DL++L   
Sbjct: 127 VLSDSSPVAILTTSSAVDDVVQHVARRPGESPPS--------------IIEVDLLDLDAP 172

Query: 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS----AHQELVGELDH 236
                    +    A L Y+SG+T    GV+++H+N       +     A  + +   + 
Sbjct: 173 -NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNS 231

Query: 237 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMA----LRAIEKYRVTVWWVVPP 292
            ++  LP +H  GL + +   +  G   V              +  +           P 
Sbjct: 232 ALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSAA-PN 290

Query: 293 IILALA----KNSLVRKFDISSLKLVGSGAAPLGKELMED-CQKNIP---GATIFQVGYG 344
               LA     +  +   D+ ++  + SG+  +    ++    +         + +  Y 
Sbjct: 291 FAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYW 350

Query: 345 MTETCAPIS-----------------LENPLVGVRRSGSAGTLV-----AGVEAQIVSVD 382
           + E    ++                 L          G A +L+          +IV  D
Sbjct: 351 LAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSD 410

Query: 383 TLKPLPPNQLGEIWVRGPNVTPG 405
           T    P   +GEIWV G NV  G
Sbjct: 411 TCIECPDGTVGEIWVHGDNVANG 433

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  146 bits (370), Expect = 7e-39
 Identities = 82/405 (20%), Positives = 152/405 (37%), Gaps = 60/405 (14%)

Query: 31  HFLFRNSASYSSKLALI--DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
            FL R +A +  K  +           ++++      ++    R LG+   D V     N
Sbjct: 22  DFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFN 81

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL--NLP 146
                  +  V  +GA+  TANP  +  E++  +  +  K+++  P L   V+ +   L 
Sbjct: 82  HFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK 141

Query: 147 AV----LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSG 202
            V    ++  K               +++ + +        +P+       A  + Y++G
Sbjct: 142 TVQHFVVMDEKA----------PEGYLAYEEALGEEADPVRVPE-----RAACGMAYTTG 186

Query: 203 TTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHV-----------FGLS 251
           TTG+ KGV+ +H+  +  SL  S           VVL V+PMFHV            G  
Sbjct: 187 TTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAK 246

Query: 252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
            +L              + D    +   +   VT    VP + LALA         + +L
Sbjct: 247 QVLPGP-----------RLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTL 295

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVG---------VR 362
           + +  G +   + L+   ++   G  + Q GYG+TET   +                 + 
Sbjct: 296 RRLVVGGSAAPRSLIARFERM--GVEVRQ-GYGLTETSPVVVQNFVKSHLESLSEEEKLT 352

Query: 363 RSGSAGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPG 405
                G  +  V  ++   +  +P+P +   LGE+ ++GP +T G
Sbjct: 353 LKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGG 396

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score =  123 bits (309), Expect = 1e-31
 Identities = 43/278 (15%), Positives = 79/278 (28%), Gaps = 34/278 (12%)

Query: 166 SKIVSFHDLIELSGSVTDIPD--------VSVKQTDAAALLYSSGTTGVSKGVILTHKNF 217
             + + +DL + S     +            +       +  S GTTG  K V+      
Sbjct: 57  KDVKTINDLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWI 116

Query: 218 IA-ASLMISAHQELVGELDHVVLCVLPMF-HVFGLSVILYDQLQKGNCV----------- 264
            A  S  +S +Q   G      L  +P   H+ G           G              
Sbjct: 117 EALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKR 176

Query: 265 -VSMGKFD---------IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314
            +S G            ++     +    +      PP++  L K   V      SL  +
Sbjct: 177 SLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQI 236

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGV 374
             G   L  + ++     I     F   YG T     +S    +    +     +    +
Sbjct: 237 TLGGTELNLDEIKFIASEILPDCEFSASYGSTSAL-GVSRSLLITSESQQVIYDSFSPFI 295

Query: 375 EAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFF 412
              +V   T + +   + G + V   +++P   Y    
Sbjct: 296 TYDVVDSITAQTVEYGERGNVIVT--HLSPWAFYPRVA 331

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 77.5 bits (192), Expect = 2e-15
 Identities = 70/356 (19%), Positives = 126/356 (35%), Gaps = 49/356 (13%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
           H         +  ++++        I FLG +  G     A    +       + +  ++
Sbjct: 41  HWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGH----AYIPVDLSIPADRVQRIAEN 96

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S  KL+++   +   V DL +  V                     +  D+       T  
Sbjct: 97  SGAKLLLSATAV--TVTDLPVRIVSE------------------DNLKDIFFTHKGNTPN 136

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL-VGELDHVVLCVLP 243
           P+ +VK  +   ++Y+SG+TG  KGV +T+   +  S    A ++  +     V L   P
Sbjct: 137 PEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV--SFTKWAVEDFNLQTGQ-VFLNQAP 193

Query: 244 MFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK 299
               F LSV+ +Y  L  G  +           +    ++E+  + VW   P        
Sbjct: 194 F--SFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251

Query: 300 NSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTE-----TCAPISL 354
            +   +  + ++K        L  E+     +  P ATI    YG TE     T   ++ 
Sbjct: 252 EASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNT-YGPTEATVAVTGIHVTE 310

Query: 355 ENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           E       +S   G   +     I+  D     P  + GEI + GP+V+ G  Y+ 
Sbjct: 311 EVL--DQYKSLPVGYCKSDCRLLIMKED-GTIAPDGEKGEIVIVGPSVSVG--YLG 361

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 76.4 bits (189), Expect = 3e-15
 Identities = 66/359 (18%), Positives = 123/359 (34%), Gaps = 56/359 (15%)

Query: 69  HSFRHLGITKKDV-VLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVK 123
            + +     +K   +L++     H  + FLG +  G          +       ++K ++
Sbjct: 41  AAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGH----PYIPVDLSIPSERIAKIIE 96

Query: 124 DSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTD 183
            S  +L+I    L        +  V                        + +  +   + 
Sbjct: 97  SSGAELLIHAAGLSIDAVGQQIQTVSA----------------------EELLENEGGSV 134

Query: 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHK---NFIAASLMISAHQELVGELDHVVLC 240
             D  VK+ +   ++Y+SG+TG  KGV ++     +F     + +     V     + L 
Sbjct: 135 SQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDW--ICADFP--VSGGK-IFLN 189

Query: 241 VLPMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILA 296
             P    F LSV+ LY  LQ G  +           ++    ++K  + VW   P  +  
Sbjct: 190 QAPF--SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247

Query: 297 LAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTE-----TCAP 351
              +    +  +            L   + +   +  P A IF   YG TE     T   
Sbjct: 248 CLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNT-YGPTEATVAVTSVE 306

Query: 352 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
           I+ +        S   G     +   I+  +  +PLP  + GEI + GP+V+ G  Y+ 
Sbjct: 307 ITNDVI--SRSESLPVGFAKPDMNIFIMDEE-GQPLPEGEKGEIVIAGPSVSRG--YLG 360

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 75.6 bits (187), Expect = 6e-15
 Identities = 73/376 (19%), Positives = 124/376 (32%), Gaps = 55/376 (14%)

Query: 52  DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA-- 109
            E  ++ Q K     ++     L +  K  VL+F   +      F+ +   G     A  
Sbjct: 27  GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGH----AYI 82

Query: 110 --NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSK 167
             +       +   ++ + P L+I + E    ++ ++L ++                   
Sbjct: 83  PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSE----------------- 125

Query: 168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHK---NFIAASLMI 224
                +  +L+    +    SVK  D   ++++SGTTG  KGV ++H    +F     MI
Sbjct: 126 ----IESAKLAEMPYE-RTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNW--MI 178

Query: 225 SAHQELVGELDHVVLCVLPMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIE 280
                 V +    +L   P    F LSV+     L  G  +         D +     I 
Sbjct: 179 EDAAFDVPKQP-QMLAQPPY--SFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIA 235

Query: 281 KYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340
           +  V +W   P        +    +  + +L         L         +  P A I  
Sbjct: 236 QLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN 295

Query: 341 VGYGMTE-----TCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDT-LKPLPPNQLGE 394
             YG TE     +   I+ E            G         I  +D   K L   + GE
Sbjct: 296 A-YGPTEATVALSAIEITREMV--DNYTRLPIGYPKPDSPTYI--IDEDGKELSSGEQGE 350

Query: 395 IWVRGPNVTPGIVYIN 410
           I V GP V+ G  Y+N
Sbjct: 351 IIVTGPAVSKG--YLN 364

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 76.5 bits (189), Expect = 6e-15
 Identities = 68/352 (19%), Positives = 116/352 (32%), Gaps = 46/352 (13%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
              +  G  K  VV ++   S+   I  LGV+  GA    A    +P      +S  + D
Sbjct: 504 RRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGA----AYLPVDPKLPEDRISYMLAD 559

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S    ++T  E+ ++  +L      L                    F D           
Sbjct: 560 SAAACLLTHQEMKEQAAELPYTGTTL--------------------FIDDQTRFEEQASD 599

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244
           P  ++   D A ++Y+SGTTG  KG I TH N     L+         + D   L V   
Sbjct: 600 PATAIDPNDPAYIMYTSGTTGKPKGNITTHANI--QGLVKHVDYMAFSDQD-TFLSVSN- 655

Query: 245 FHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKN 300
            + F       Y  +     ++        D E     I +  V V +    +   L   
Sbjct: 656 -YAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA 714

Query: 301 SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTET--CAPISLENPL 358
                  +  L+ +  G        +    + +    +    YG TE    A   + + L
Sbjct: 715 GEDW---MKGLRCILFGGERASVPHVRKALRIMGPGKLIN-CYGPTEGTVFATAHVVHDL 770

Query: 359 VGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
                S   G  ++     I++ +  +  P   +GE+ + G  V+ G  Y+N
Sbjct: 771 PDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKG--YVN 819

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 59/360 (16%), Positives = 114/360 (31%), Gaps = 57/360 (15%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
           +   H  +     + +    S+      +G++  G                   S  ++D
Sbjct: 70  NLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGN----TYVPIEAGLPNDRKSFLLRD 124

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S   +       +D V+      VL                           LS   T  
Sbjct: 125 SRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIE-----------------NLSTQDTSD 167

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLP- 243
              +  +   A LLY+SG+TG  KGV ++  N  +      A  +L+G +    L +   
Sbjct: 168 ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSS---FSDAWGKLIGNVAPKSLELGGV 224

Query: 244 ----MFH--VFGLSVI-LYDQLQKGNCVVSMGKFDIEMAL-RAIEKYRVTVWWVVPPIIL 295
                     F + +  ++   + G C V+  +  +   L R   +  VT   +VP    
Sbjct: 225 GKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVP---- 280

Query: 296 ALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTE-----TCA 350
           +L   + +   D   L  +G G   +     +    +     +    YG TE     +  
Sbjct: 281 SLLDQTGLVPEDAPHLVYLGVGGEKMTPRTQQIWSSS-DRVALVN-VYGPTEVTIGCSAG 338

Query: 351 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            I  ++           G  +    A +++  + + +     GE+ + G  V  G  Y+N
Sbjct: 339 RILPDSDTR------CIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANG--YLN 390

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 67.9 bits (167), Expect = 2e-12
 Identities = 69/357 (19%), Positives = 118/357 (33%), Gaps = 62/357 (17%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVI-AIGA---IASTANPVYTVSELSKQVKD 124
             F   GI K  +V I    SI   I  L V+ A GA   I    +  Y    +   + D
Sbjct: 79  RIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI----DIEYPKERIQYILDD 134

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
           S  ++++T   L   + ++     +                       +   +       
Sbjct: 135 SQARMLLTQKHLVHLIHNIQFNGQVEIF--------------------EEDTIKIREGTN 174

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQEL--VGELDHVVLCVL 242
             V  K TD A ++Y+SGTTG  KG +L HK       +    +    V E D  +    
Sbjct: 175 LHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISN---LKVFFENSLNVTEKD-RIGQFA 230

Query: 243 PMFHVFGLSVI-LYDQLQKGNCVV---SMGKFDIEMALRAIEKYRVTVWWVVPPIILALA 298
            +   F  SV  ++  L  G  +         D     + I +  +TV  + P  ++ L 
Sbjct: 231 SI--SFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD 288

Query: 299 KNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTE-----TCAPIS 353
              +       S++ + +  +     L+   +      T     YG TE     T    +
Sbjct: 289 PERI------LSIQTLITAGSATSPSLVNKWK---EKVTYIN-AYGPTETTICATTWVAT 338

Query: 354 LENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
            E     V      G  +   +  IV  + L+     + GE+ + G  +  G  Y  
Sbjct: 339 KETIGHSV----PIGAPIQNTQIYIVDEN-LQLKSVGEAGELCIGGEGLARG--YWK 388

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 67/322 (20%), Positives = 125/322 (38%), Gaps = 60/322 (18%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI 90
           R+      + A+I    D    + +S+ +    V + +++   LGI K DVV I+ P   
Sbjct: 84  RHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 143

Query: 91  HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL----- 145
              +  L    IGA+ S     ++   ++  + DS+ +LVIT  E     + + L     
Sbjct: 144 EAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVD 203

Query: 146 PAVLLGSKDKVSSSGLISRSSKIVSF--------HDLIELSGSVTDIPDVSVKQTDAAAL 197
            A+   +   V    ++ R+   + +         DLIE   +  +    ++   D   +
Sbjct: 204 DALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIE--KASPEHQPEAMNAEDPLFI 261

Query: 198 LYSSGTTGVSKGVI-----------LTHKNFIAASLMISAHQELVGELDHVVLCVLPMFH 246
           LY+SG+TG  KGV+            T K        +  +         +  C   +  
Sbjct: 262 LYTSGSTGKPKGVLHTTGGYLVYAATTFKY-------VFDYHP-----GDIYWCTADVGW 309

Query: 247 VFGLSVILYDQLQKGNCVV---------SMGKF-DIEMALRAIEKYRVTVWWVVPPIILA 296
           V G S +LY  L  G   +         +  +   +      ++K++V + +  P  I A
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV------VDKHQVNILYTAPTAIRA 363

Query: 297 LAK--NSLVRKFDISSLKLVGS 316
           L    +  +   D SSL+++GS
Sbjct: 364 LMAEGDKAIEGTDRSSLRILGS 385

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 62.5 bits (153), Expect = 1e-10
 Identities = 53/355 (14%), Positives = 101/355 (28%), Gaps = 58/355 (16%)

Query: 69  HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA----NPVYTVSELSKQVKD 124
                        + ++   S     C L ++  G          +     +  ++  + 
Sbjct: 67  DYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGH----HYLYIDLKQPAAWNAELCRQ 122

Query: 125 SNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDI 184
            + +L++           L  P V                         +  L  +   +
Sbjct: 123 VDCRLILDCSTTPTPANGL--PCV------------------------PVRHLPAAPASV 156

Query: 185 PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244
                     A + +SSGTTG  K +  TH       L +              L   P 
Sbjct: 157 ARPCFAADQIAYINFSSGTTGRPKAIACTHAG--ITRLCLGQSFLAFAPQM-RFLVNSP- 212

Query: 245 FHVFGLSVI-LYDQLQKGNCVV--SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNS 301
              F  + + ++  L  G C V   +G  D  +  + I +      W+   +   L    
Sbjct: 213 -LSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD 271

Query: 302 LVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTE-----TCAPISLEN 356
                 +  L+ + +G   L    +       P   +   GYG TE      C  ++   
Sbjct: 272 PDC---LGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN-GYGPTENTTFTCCHVVT--- 324

Query: 357 PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP-PNQLGEIWVRGPNVTPGIVYIN 410
                      G  +AG    ++  +  + +  P++ GEI   G  +  G  Y N
Sbjct: 325 DDDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQG--YRN 376

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 23/206 (11%)

Query: 200 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVF--GLSVILY 255
           SSGTTG    ++ +    +  A  +    +   + + D         + +F  GL     
Sbjct: 94  SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSS--GYGMFTGGL--GFQ 149

Query: 256 DQLQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLK 312
              ++ G   V     + +  ++ I  ++ T    +P   + LA+       D   ++LK
Sbjct: 150 YGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLK 209

Query: 313 LVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAP-ISLENPLVGVRRSGSAGTLV 371
            +  GA P   E     ++ +     +   +GMTE   P ++ E            G   
Sbjct: 210 TLVIGAEPHTDEQRRKIER-MLNVKAYNS-FGMTEMNGPGVAFECQ-------EQNGMHF 260

Query: 372 A--GVEAQIVSVDTLKPLPPNQLGEI 395
                  +I+  +T +P+P  ++GE+
Sbjct: 261 WEDCYLVEIIDPETGEPVPEGEIGEL 286

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 18/204 (8%)

Query: 200 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           SSGTTG    V  T    +  A  +  S         D V +         GL    +  
Sbjct: 98  SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL--GAHYG 155

Query: 258 LQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLKLV 314
            ++ G  V+  G    E  ++ I+ +R  +  V P  +L++A     +  D   SSL++ 
Sbjct: 156 AERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIG 215

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAP-ISLENPLVGVRRSGSAGTLVA- 372
             GA P   ++    ++ + G     + YG++E   P ++ E            G  +  
Sbjct: 216 IFGAEPWTNDMRVAIEQRM-GIDAVDI-YGLSEVMGPGVASECV------ETKDGPTIWE 267

Query: 373 -GVEAQIVSVDTLKPLPPNQLGEI 395
                +I+  +T + LP  +LGE+
Sbjct: 268 DHFYPEIIDPETGEVLPDGELGEL 291

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 18/204 (8%)

Query: 200 SSGTTGVSKGVILTHK--NFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           SSGTTG    V  T +  +  A     S         D +           GL   ++  
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL--GIHYG 157

Query: 258 LQK-GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDI--SSLKLV 314
            ++ G  VV M     E  ++ I  +   +  V P  +L L    + +  D   SSLK+ 
Sbjct: 158 AERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIG 217

Query: 315 GSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAP-ISLENPLVGVRRSGSAGTLVA- 372
             GA P  + L  + +  + G     + YG++E   P ++ E            G ++  
Sbjct: 218 IFGAEPWTQALRNEVETRV-GIDALDI-YGLSEVMGPGVACECV------ETKDGPVIWE 269

Query: 373 -GVEAQIVSVDTLKPLPPNQLGEI 395
                +I+   T + LP    GE+
Sbjct: 270 DHFYPEIIDPVTGEVLPDGSQGEL 293

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 38/214 (17%)

Query: 35  RNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAPNS 89
           R++    +K A+I    +     S+++ +    V +V+    + +G+ K D V ++ P  
Sbjct: 90  RHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMV 149

Query: 90  IHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITVPELWDKVKDLNL 145
               I  L +  IGAI S    V    ++ + L  ++ D + K+VIT  E     K +  
Sbjct: 150 PEAIITLLAISRIGAIHS----VVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 205

Query: 146 PAVL---LGSKDKVSSSGLISRSSKI---------VSFHDLIELSGSVTDIPDVSVKQTD 193
             ++   L     V    +  +++           + +    +     T  P   V   D
Sbjct: 206 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKK--KYKTYYPCTPVDSED 263

Query: 194 AAALLYSSGTTGVSKGVI-----------LTHKN 216
              LLY+SG+TG  KGV            LT + 
Sbjct: 264 PLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY 297

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 299 KNSLVRKFDISSLKLVGSGAAP-LG-KELME 327
           K +L +K   +SLKL    +AP L  K  ME
Sbjct: 19  KQAL-KKLQ-ASLKLYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	436
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.97
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.97
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	96.98
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	96.73
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	96.06
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	94.24
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	93.77
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	93.43
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	88.29
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	87.63
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	86.7
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	85.96
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	85.73
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	83.62
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	82.96
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	80.86
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	80.58
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	80.45

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.5e-64  Score=504.58  Aligned_cols=410  Identities=34%  Similarity=0.547  Sum_probs=347.2

Q ss_pred             CCcceeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Q 013780            7 GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA   86 (436)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~   86 (436)
                      ++..++++..+...+|.+  +|+.++|.++++++|+++|+++..+++.+||+||.++++++|+.|.+.|+++||+|+|++
T Consensus         4 ~~~~i~~~~~~~~~~p~~--~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~   81 (536)
T 3ni2_A            4 QEEFIFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFL   81 (536)
T ss_dssp             -CCCCBCCSSCCCCCCSS--CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             ccceEEecCCCCCCCCCC--CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence            456788888777777765  899999999999999999999986678999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC--CCcEEeccCCcccccccccc
Q 013780           87 PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISR  164 (436)
Q Consensus        87 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  164 (436)
                      +|++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+....  ....++..+         ..
T Consensus        82 ~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~  152 (536)
T 3ni2_A           82 PSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVD---------SA  152 (536)
T ss_dssp             CSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESS---------CC
T ss_pred             CCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEec---------CC
Confidence            9999999999999999999999999999999999999999999999987766554331  111222222         12


Q ss_pred             CcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh--ccCCCCcEEEech
Q 013780          165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE--LVGELDHVVLCVL  242 (436)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~  242 (436)
                      ..+...+.++.....  ...+.....++++++|+|||||||.||+|+++|+++...+........  +....++++++.+
T Consensus       153 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~  230 (536)
T 3ni2_A          153 PDGCLHFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVL  230 (536)
T ss_dssp             CTTCEETHHHHTSCG--GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECS
T ss_pred             CCCccCHHHHhhccc--cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEec
Confidence            223445555554433  233444567899999999999999999999999999887654332111  1122339999999


Q ss_pred             hHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCc
Q 013780          243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG  322 (436)
Q Consensus       243 p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~  322 (436)
                      |++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+++||++++
T Consensus       231 p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~  310 (536)
T 3ni2_A          231 PMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLG  310 (536)
T ss_dssp             CTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCC
T ss_pred             ChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCC
Confidence            99999999767899999999999999999999999999999999999999999999988777778999999999999999


Q ss_pred             HHHHHHHHhhCCCCeeeeccccccccCCcccccC---CCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEec
Q 013780          323 KELMEDCQKNIPGATIFQVGYGMTETCAPISLEN---PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG  399 (436)
Q Consensus       323 ~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~---~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g  399 (436)
                      +++.+++++.|+++++++ .||+||++.+++...   ......+++++|+|+++++++|+|++++++++.|+.|||+|+|
T Consensus       311 ~~~~~~~~~~~~~~~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g  389 (536)
T 3ni2_A          311 KELEDTVRAKFPQARLGQ-GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRG  389 (536)
T ss_dssp             HHHHHHHHHHCTTSEEEE-EEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEES
T ss_pred             HHHHHHHHHHCCCCCccc-cccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeC
Confidence            999999999997799999 999999987655431   1222457789999999999999998899999999999999999


Q ss_pred             CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          400 PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       400 ~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ++++.|  ||++|+.|.+.|   ..++||+|||+|+
T Consensus       390 ~~v~~G--Y~~~p~~t~~~~---~~~g~~~TGDl~~  420 (536)
T 3ni2_A          390 DQIMKG--YLNDPEATSRTI---DKEGWLHTGDIGY  420 (536)
T ss_dssp             TTSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred             cccchh--hcCChhHHHhhc---cCCCceEcccEEE
Confidence            999999  999999999987   3578999999874

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=3.1e-62  Score=488.66  Aligned_cols=411  Identities=25%  Similarity=0.343  Sum_probs=337.4

Q ss_pred             CCCCCcceeecCCCCCcCCCCCCCchHH-HHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 013780            4 SGYGRDGIYRSLRPPLVLPSDPSFSMVH-FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVV   82 (436)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~ti~~-~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V   82 (436)
                      ...+...++++..+....|..  +|+.+ +|.++++++ +++|+++...++.+||+||.++++++|+.|++.|+++||+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~p~~--~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V   80 (548)
T 2d1s_A            4 MENDENIVVGPKPFYPIEEGS--AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRI   80 (548)
T ss_dssp             ---CTTSEECCCCSSCCCSSC--HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEE
T ss_pred             CCCCcceEecCCCCCCCCCCc--CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence            344566788877665555543  78999 899999999 99999985447899999999999999999999999999999


Q ss_pred             EEEcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccc
Q 013780           83 LIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVS  157 (436)
Q Consensus        83 ~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~  157 (436)
                      +|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...+.+....     ...++.. +..  
T Consensus        81 ~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--  157 (548)
T 2d1s_A           81 ALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVIL-DSK--  157 (548)
T ss_dssp             EEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEET-TCS--
T ss_pred             EEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEe-CCc--
Confidence            99999999999999999999999999999999999999999999999999987766554321     1222222 210  


Q ss_pred             cccccccCcccchhhHHhhhcCCCCCCCCCCC------CCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh-c
Q 013780          158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSV------KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-L  230 (436)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~  230 (436)
                           ....+...++++...... ........      .++++++|+|||||||.||+|++||+++..+......... .
T Consensus       158 -----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~  231 (548)
T 2d1s_A          158 -----VDYRGYQCLDTFIKRNTP-PGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN  231 (548)
T ss_dssp             -----SCBTTBCBHHHHHHHTSC-TTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSC
T ss_pred             -----ccccccccHHHHHhcCcc-ccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhcc
Confidence                 001123346666554321 10111111      2389999999999999999999999999887665544311 1


Q ss_pred             cCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCc
Q 013780          231 VGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISS  310 (436)
Q Consensus       231 ~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~  310 (436)
                      .-..++++++.+|++|.+++...++.++ .|+++++.+.+++..+++.++++++|+++++|+++..|.+.......++++
T Consensus       232 ~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~  310 (548)
T 2d1s_A          232 QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSN  310 (548)
T ss_dssp             CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTT
T ss_pred             CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccc
Confidence            1123399999999999999975577788 999999999999999999999999999999999999999887666668899


Q ss_pred             ceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCC
Q 013780          311 LKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPN  390 (436)
Q Consensus       311 lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g  390 (436)
                      ||.+++||+++++++.+++++.|++.++++ .||+||++.+++.....  ..+.+++|+|+|+++++|+|+++++++++|
T Consensus       311 lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g  387 (548)
T 2d1s_A          311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQ-GYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLGPN  387 (548)
T ss_dssp             CCEEEECSSCCCHHHHHHHHHHTTCSCCEE-EEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCCTT
T ss_pred             eeEEEEcCccCCHHHHHHHHHHcCCCceee-ccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCCCC
Confidence            999999999999999999999997789999 99999998776664333  457789999999999999998799999999


Q ss_pred             CceEEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          391 QLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       391 ~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +.|||+++|++++.|  ||++|+.|.+.|.   .++||+|||+|+
T Consensus       388 ~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~---~~g~~~TGDl~~  427 (548)
T 2d1s_A          388 RRGEVCVKGPMLMKG--YVNNPEATKELID---EEGWLHTGDIGY  427 (548)
T ss_dssp             CCEEEEEESTTSCSE--ETTCHHHHHHHBC---TTSCEEEEEEEE
T ss_pred             CCeEEEECCHHHhhh--hcCChHHhhhccc---CCcEEEccCEEE
Confidence            999999999999999  9999999999882   578999999874

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=2.2e-62  Score=490.38  Aligned_cols=408  Identities=26%  Similarity=0.382  Sum_probs=334.7

Q ss_pred             CcceeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEE---eCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 013780            8 RDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLI   84 (436)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l   84 (436)
                      ...++.++.+....+.   .|+.++|.++++++|+++|++   +...++++||+||.++++++|+.|+++|+++||+|+|
T Consensus         4 ~~~~~~~~~~~~~~~~---~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i   80 (550)
T 3rix_A            4 AKNIKKGPAPFYPLED---GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV   80 (550)
T ss_dssp             GGGSEECCCCSSCCCC---SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred             ccceeeCCCCCCCccc---CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence            4456666655544443   799999999999999999975   5445689999999999999999999999999999999


Q ss_pred             EcCCCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccc
Q 013780           85 FAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSS  159 (436)
Q Consensus        85 ~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  159 (436)
                      +++|++++++++|||+++|++++|++|.++.+++.++++.++++++|+++...+.+....     ...+++....     
T Consensus        81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  155 (550)
T 3rix_A           81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK-----  155 (550)
T ss_dssp             ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS-----
T ss_pred             EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCC-----
Confidence            999999999999999999999999999999999999999999999999988766554331     2233332221     


Q ss_pred             cccccCcccchhhHHhhhcCCCC----CCCC-CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh-ccCC
Q 013780          160 GLISRSSKIVSFHDLIELSGSVT----DIPD-VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGE  233 (436)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~  233 (436)
                         ....+...+.++........    ...+ ....++++++|+|||||||.||+|+++|+++..+......... ....
T Consensus       156 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~  232 (550)
T 3rix_A          156 ---TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII  232 (550)
T ss_dssp             ---SCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCC
T ss_pred             ---ccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCC
Confidence               12233455666655433211    1111 2224578999999999999999999999999887655433321 1122


Q ss_pred             CCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceE
Q 013780          234 LDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKL  313 (436)
Q Consensus       234 ~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~  313 (436)
                      .++++++.+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..|++.......++++||.
T Consensus       233 ~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~  311 (550)
T 3rix_A          233 PDTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHE  311 (550)
T ss_dssp             TTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCE
T ss_pred             CCcEEEEechHHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccE
Confidence            349999999999999986 6788899999999999999999999999999999999999999999988777778999999


Q ss_pred             EEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCce
Q 013780          314 VGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG  393 (436)
Q Consensus       314 i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~G  393 (436)
                      +++||+++++++.+++++.|+...+++ .||+||+++.++.....  ..+.+++|+|+|+++++|+|+++++++++|+.|
T Consensus       312 i~~gG~~l~~~~~~~~~~~~~~~~v~~-~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~G  388 (550)
T 3rix_A          312 IASGGAPLSKEVGEAVAKRFHLPGIRQ-GYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRG  388 (550)
T ss_dssp             EEECSSCCCHHHHHHHHHHTTCSCCEE-EEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTTCCE
T ss_pred             EEEecCCCCHHHHHHHHHHcCCCcccc-ccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCCCCe
Confidence            999999999999999999998455888 99999999877766554  567899999999999999998889999999999


Q ss_pred             EEEEecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          394 EIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       394 el~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ||+|+|++++.|  ||++|+.|.+.|   ..++||+|||+|+
T Consensus       389 El~v~g~~v~~G--Y~~~~~~t~~~~---~~~g~~~TGDl~~  425 (550)
T 3rix_A          389 ELCVRGPMIMSG--YVNNPEATNALI---DKDGWLHSGDIAY  425 (550)
T ss_dssp             EEEEESTTSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred             EEEEeCCCcchh--hcCChhhhhhhc---CCCCCeecCcEEE
Confidence            999999999999  999999999987   3578999999874

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=1.4e-61  Score=484.46  Aligned_cols=387  Identities=27%  Similarity=0.439  Sum_probs=330.5

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCC------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHH
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGV   99 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~   99 (436)
                      ++|+.++|.++++++|+++|+++.+.+      +++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||
T Consensus        18 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~   97 (549)
T 3g7s_A           18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYAL   97 (549)
T ss_dssp             CCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            489999999999999999999987422      88999999999999999999999999999999999999999999999


Q ss_pred             HHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC----CCcEEeccCCccccccccccCcccchhhHHh
Q 013780          100 IAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLI  175 (436)
Q Consensus       100 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (436)
                      +++|++++|++|.++.+++.+++++++++++|+++...+.+....    ...+++..             .....+.++.
T Consensus        98 ~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~  164 (549)
T 3g7s_A           98 WRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVG-------------GEVNSLSEVM  164 (549)
T ss_dssp             HHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEET-------------CSSSCHHHHH
T ss_pred             HHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeC-------------CCCcCHHHHH
Confidence            999999999999999999999999999999999988766554432    22222221             1234566666


Q ss_pred             hhcCCCCCCCCCCCCC-CCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHH
Q 013780          176 ELSGSVTDIPDVSVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVIL  254 (436)
Q Consensus       176 ~~~~~~~~~~~~~~~~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~  254 (436)
                      ....  .........+ +++++|+|||||||.||+|+++|+++..++........+...  +++++.+|++|.+++. .+
T Consensus       165 ~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~~~~~p~~~~~~~~-~~  239 (549)
T 3g7s_A          165 DSGS--EDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHM--DTIVGCMPMFHSAEFG-LV  239 (549)
T ss_dssp             HHSC--SCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTT--CEEECCSCTTSHHHHH-HH
T ss_pred             hcCc--cccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCC--CEEEEeCcHHHHHHHH-HH
Confidence            5544  2223333334 899999999999999999999999999998877666655443  9999999999999997 48


Q ss_pred             HhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCc--cCCCcceEEEecCCCCcHHHHHHHHhh
Q 013780          255 YDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKN  332 (436)
Q Consensus       255 ~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~lr~i~~gg~~l~~~~~~~~~~~  332 (436)
                      +.++..|+++++.+.+++..+++.++++++|+++++|+++..|.+......  .++++||.+++||+++++++.+++.+.
T Consensus       240 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~  319 (549)
T 3g7s_A          240 NLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKL  319 (549)
T ss_dssp             TTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred             HHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999988765444  678999999999999999999999998


Q ss_pred             ----CC--CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCc
Q 013780          333 ----IP--GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGI  406 (436)
Q Consensus       333 ----~~--~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~  406 (436)
                          ++  ++++++ .||+||++.+++...... ..+..++|+|+++++++|+|+++++++++|+.|||+|+|++++.| 
T Consensus       320 ~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G-  396 (549)
T 3g7s_A          320 AAEKCNNPRLRHNQ-IWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG-  396 (549)
T ss_dssp             HHHHSSCTTCEEEE-EEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSE-
T ss_pred             HHhhcCCccccccc-eEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhh-
Confidence                54  388999 999999988777655432 357789999999999999998899999999999999999999999 


Q ss_pred             cccCChhhhhhhccccccCC--eeecCCCCC
Q 013780          407 VYINFFVFTLFLWGCEHTDS--FIRGKDQQT  435 (436)
Q Consensus       407 ~Y~~~~~~~~~~~~~~~~~~--~~~tgD~~~  435 (436)
                       ||++|+.|.+.|. .+.+|  ||+|||+|+
T Consensus       397 -Y~~~~~~t~~~f~-~~~~g~~~~~TGDl~~  425 (549)
T 3g7s_A          397 -YWKREKENQECWW-YDEKGRKFFRTGDVGF  425 (549)
T ss_dssp             -ETTCTTGGGTSEE-ECTTCCEEEEEEEEEE
T ss_pred             -hCCChhhhhhhhh-ccCCCCceEccCcEEE
Confidence             9999999999872 23355  999999874

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=6.8e-62  Score=479.89  Aligned_cols=394  Identities=19%  Similarity=0.187  Sum_probs=311.8

Q ss_pred             CCCCCCCchHHHHhhhcccCCCceEEEeCC-----CC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHH
Q 013780           21 LPSDPSFSMVHFLFRNSASYSSKLALIDAD-----SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP   93 (436)
Q Consensus        21 ~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~   93 (436)
                      ...-+++|+.++|.++++++|+++|+++.+     ++  +++||+||.++++++|+.|.++|+ +||+|+|+++|+++++
T Consensus        18 ~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~   96 (480)
T 3t5a_A           18 GSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV   96 (480)
T ss_dssp             ------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH
T ss_pred             cCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH
Confidence            333445899999999999999999998763     22  789999999999999999999996 9999999999999999


Q ss_pred             HHHHHHHHhCCeEeecCC---CCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccch
Q 013780           94 ICFLGVIAIGAIASTANP---VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVS  170 (436)
Q Consensus        94 ~~~lA~~~~G~~~v~l~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (436)
                      +++|||+++|+++||+++   .++.+++.+++++++++++|++....+.+..........             ....+..
T Consensus        97 ~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-------------~~~~~~~  163 (480)
T 3t5a_A           97 VAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE-------------SPPSIIE  163 (480)
T ss_dssp             HHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------------------CCEEEE
T ss_pred             HHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc-------------cccceeE
Confidence            999999999999999999   778899999999999999999998877666543211100             0000111


Q ss_pred             hhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC----CCCcEEEechhHHH
Q 013780          171 FHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG----ELDHVVLCVLPMFH  246 (436)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~  246 (436)
                      ++.......  .........++++++|+|||||||.||+|++||+++..++...........    ...+++++.+|++|
T Consensus       164 ~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h  241 (480)
T 3t5a_A          164 VDLLDLDAP--NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYH  241 (480)
T ss_dssp             GGGSCTTCC-----CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTS
T ss_pred             ecccccccc--cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcC
Confidence            111111111  222334556789999999999999999999999999998877666655543    11499999999999


Q ss_pred             HHHHHHHHHhhccCCcEEEEcCCC----CHHHHHHHHHHhcceEEEecHHHHHHHHhc----cccCccCCCcceEEEecC
Q 013780          247 VFGLSVILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN----SLVRKFDISSLKLVGSGA  318 (436)
Q Consensus       247 ~~g~~~~~~~~l~~G~~v~~~~~~----~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~----~~~~~~~l~~lr~i~~gg  318 (436)
                      .+|+...++.++..|+++++.++.    ++..+++.++++++| +.++|+++..++..    ......++++||.+++||
T Consensus       242 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG  320 (480)
T 3t5a_A          242 DMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGS  320 (480)
T ss_dssp             TTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECC
T ss_pred             ccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecC
Confidence            999877789999999999999754    899999999999999 88899988887763    334556789999999999


Q ss_pred             CCCcHHHHHHHHhhCC-----CCeeeeccccccccCCcccccCCCCC-----------------------ccCcCccccc
Q 013780          319 APLGKELMEDCQKNIP-----GATIFQVGYGMTETCAPISLENPLVG-----------------------VRRSGSAGTL  370 (436)
Q Consensus       319 ~~l~~~~~~~~~~~~~-----~~~i~~~~YG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~p  370 (436)
                      +++++++.++|++.|+     +..+++ .||+||++.+++.......                       ..+..++|+|
T Consensus       321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p  399 (480)
T 3t5a_A          321 ERVQAATIKRFADRFARFNLQERVIRP-SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP  399 (480)
T ss_dssp             TTCCHHHHHHHHHHSGGGTCCGGGEEE-EEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECC
T ss_pred             CcCCHHHHHHHHHHHhhcCCChhhccc-cccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcc
Confidence            9999999999999984     457999 9999999987776543311                       1345689999


Q ss_pred             cCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc--------ccccCCeeecCCCCC
Q 013780          371 VAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--------CEHTDSFIRGKDQQT  435 (436)
Q Consensus       371 ~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~--------~~~~~~~~~tgD~~~  435 (436)
                      ++ ++++|+|++++++++.|++|||+|+|++++.|  ||++|+.|.+.|.        -...++||+|||+|+
T Consensus       400 ~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~  469 (480)
T 3t5a_A          400 RS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANG--YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGF  469 (480)
T ss_dssp             SS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCC--BTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEE
T ss_pred             cC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccc--cccCcchhHHHHhhhhccccCCCCCCCeeeccceee
Confidence            99 99999998779999999999999999999999  9999999999982        112467999999874

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=7.6e-61  Score=475.56  Aligned_cols=380  Identities=23%  Similarity=0.327  Sum_probs=323.5

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      ..|+.++|.++++++|+++|+++.+.+.++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus        15 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   94 (517)
T 3r44_A           15 MKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAV   94 (517)
T ss_dssp             GGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             ccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence            38999999999999999999998844459999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCC-----CcEEeccCCccccccccccCcccchhhHHhhhcCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNL-----PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (436)
                      ++|++|.++.+++.+++++++++++|++......+.....     ..++..              .....+.+...... 
T Consensus        95 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-  159 (517)
T 3r44_A           95 AVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDW--------------IGADSLAERLRSAA-  159 (517)
T ss_dssp             EEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEE--------------EEHHHHHHHHHHCC-
T ss_pred             EEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEc--------------cCcccHHHHhhccC-
Confidence            9999999999999999999999999999877665543310     000000              00123444444333 


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  260 (436)
                       .........++++++|+|||||||.||+|+++|+++..++......+.+...  +++++.+|++|.+++...++..+ .
T Consensus       160 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~~~~~~~~~~~-~  235 (517)
T 3r44_A          160 -ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYR--DRLLLPLPMFHVAALTTVIFSAM-R  235 (517)
T ss_dssp             -CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTT--CEEEECSCTTSHHHHHHHHHHHH-H
T ss_pred             -cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCC--CEEEEeCchHHHHHHHHHHHHHh-c
Confidence             3334455678999999999999999999999999999988776666655333  99999999999999974455555 9


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (436)
Q Consensus       261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~  340 (436)
                      |+++++.+.+++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.+++.+.  ++++++
T Consensus       236 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~  313 (517)
T 3r44_A          236 GVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQ  313 (517)
T ss_dssp             TCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEE
T ss_pred             CeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEE
Confidence            999999999999999999999999999999999999998877667788999999999999999999999988  599999


Q ss_pred             ccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780          341 VGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  420 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~  420 (436)
                       .||+||+++.++.........+.+++|+|+++++++|+| +++.+++.| .|||+|+|+.++.|  ||++|+.|.+.| 
T Consensus       314 -~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~G--Y~~~p~~t~~~f-  387 (517)
T 3r44_A          314 -GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKE--YWNRPEATRDAF-  387 (517)
T ss_dssp             -EEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSE--ETTCHHHHHHTE-
T ss_pred             -eecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhh--hCCChhhhHhhh-
Confidence             999999988776654443356788999999999999999 589999989 89999999999999  999999999999 


Q ss_pred             ccccCCeeecCCCCC
Q 013780          421 CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ~~~~~~~~~tgD~~~  435 (436)
                         .++||+|||+|+
T Consensus       388 ---~~g~~~TGDl~~  399 (517)
T 3r44_A          388 ---DNGWFRTGDIGE  399 (517)
T ss_dssp             ---ETTEEEEEEEEE
T ss_pred             ---cCCCEecceeEE
Confidence               588999999874

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1.6e-60  Score=476.05  Aligned_cols=384  Identities=22%  Similarity=0.292  Sum_probs=321.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.++|.++++++|+++|+++.  ++++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus        30 ~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~  107 (544)
T 3o83_A           30 QPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV  107 (544)
T ss_dssp             CCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence            78999999999999999999987  7999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchH--------HHHhhcC--CCcEEeccCCccccccccccCcccchhhHHhh
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      +|+++.++.+++.+++++++++++|++....        ..+....  ...++....           ......+.++..
T Consensus       108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  176 (544)
T 3o83_A          108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNH-----------QATDFGLLDWIE  176 (544)
T ss_dssp             EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETC-----------CTTSEEHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecC-----------Cccccchhhhhh
Confidence            9999999999999999999999999987542        2222221  122222211           001112333333


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH-HHH
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~  255 (436)
                      .... .........++++++|+|||||||.||+|+++|+++..++........+...  +++++.+|++|.+++.. .++
T Consensus       177 ~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~h~~~~~~~~~~  253 (544)
T 3o83_A          177 TPAE-TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSN--TRLLCALPAPHNFMLSSPGAL  253 (544)
T ss_dssp             SCCS-SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHHSSHHH
T ss_pred             cccc-cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCC--CeEEEecCcceEeecchHHHH
Confidence            3221 1112244568899999999999999999999999999998877666655443  99999999999998864 488


Q ss_pred             hhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCC
Q 013780          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (436)
Q Consensus       256 ~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~  335 (436)
                      .++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++++.+++++.++ 
T Consensus       254 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-  332 (544)
T 3o83_A          254 GVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN-  332 (544)
T ss_dssp             HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC-
T ss_pred             HHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC-
Confidence            8999999999999999999999999999999999999999999887766667899999999999999999999999996 


Q ss_pred             CeeeeccccccccCCcccccCCCCCccCcCcccccc-CCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhh
Q 013780          336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVF  414 (436)
Q Consensus       336 ~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~  414 (436)
                      +++++ .||+||++..+...... ......++|+|+ ++++++|+| ++++++++|++|||+++|++++.|  ||++|+.
T Consensus       333 ~~~~~-~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~  407 (544)
T 3o83_A          333 CKLQQ-VFGMAEGLVNYTRLDDS-DEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCG--YYQSPEH  407 (544)
T ss_dssp             SEEEE-EEECTTSCEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSC--CTTCHHH
T ss_pred             CcEEe-eeccccccceeecCCCc-hhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchh--hcCChhh
Confidence            99999 99999987544432221 134567899996 899999999 699999999999999999999999  9999999


Q ss_pred             hhhhccccccCCeeecCCCCC
Q 013780          415 TLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       415 ~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |.+.|.   .++||+|||+|+
T Consensus       408 t~~~f~---~~g~~~TGDlg~  425 (544)
T 3o83_A          408 NSQVFD---EDNYYYSGDLVQ  425 (544)
T ss_dssp             HHHHBC---TTCCEEEEEEEE
T ss_pred             hhhhCC---CCCCeEcCCEEE
Confidence            999883   578999999873

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.3e-60  Score=473.92  Aligned_cols=380  Identities=18%  Similarity=0.233  Sum_probs=320.5

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      ||+.+.|.++++++|+++|+++.  ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~   78 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR--DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY   78 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC--CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            68999999999999999999997  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|+++.++.+++.++++.++++++|++......    .....+...                ..+.+.............
T Consensus        79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~  138 (512)
T 3fce_A           79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVT----DLPVRIVSE----------------DNLKDIFFTHKGNTPNPE  138 (512)
T ss_dssp             EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS----CCSSEEEET----------------HHHHHHHHHTTTCCCCGG
T ss_pred             EeeCCCCcHHHHHHHHHhcCCCEEEecCccccc----ccccceech----------------hhhhhhcccccccCCCcc
Confidence            999999999999999999999999997543110    011111110                122222222221122233


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++|+|||||||.||+|+++|+++.+.+........+...  +++++.+|++|..++. .++.++..|+++++
T Consensus       139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~  215 (512)
T 3fce_A          139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTG--QVFLNQAPFSFDLSVM-DIYPSLVTGGTLWA  215 (512)
T ss_dssp             GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSS--CEEEECSCTTSGGGHH-HHHHHHHTTCEEEE
T ss_pred             ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCC--CEEEEeCCccHhHHHH-HHHHHHhCCCEEEE
Confidence            45578899999999999999999999999999988776666555333  9999999999999985 78999999999999


Q ss_pred             cCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       267 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      .+.   +++..+++.++++++|++.++|+++..++........++++||.+++||+++++++.+++.+.|+++++++ .|
T Consensus       216 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~-~Y  294 (512)
T 3fce_A          216 IDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN-TY  294 (512)
T ss_dssp             CCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE-EE
T ss_pred             CCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe-Cc
Confidence            976   68999999999999999999999999999888777778999999999999999999999999997799999 99


Q ss_pred             cccccCCcccccCCCCC---ccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780          344 GMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  420 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~  420 (436)
                      |+||+++.++.......   ..+..++|+|+++++++|+| ++|+++++|+.|||+++|++++.|  ||++|+.+.+.|.
T Consensus       295 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~  371 (512)
T 3fce_A          295 GPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVG--YLGSPELTEKAFT  371 (512)
T ss_dssp             CCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSC--BTTCHHHHHHHEE
T ss_pred             ccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChh--hcCCchhhhhccc
Confidence            99999887665432211   23567899999999999999 599999999999999999999999  9999999999985


Q ss_pred             ccccCCeeecCCCCC
Q 013780          421 CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ~~~~~~~~~tgD~~~  435 (436)
                      ..+.++||+|||+|+
T Consensus       372 ~~~~~~~~~TGDlg~  386 (512)
T 3fce_A          372 MIDGERAYKTGDAGY  386 (512)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             cCCCCEEEeCCceEE
Confidence            556678999999874

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.1e-60  Score=472.93  Aligned_cols=378  Identities=26%  Similarity=0.352  Sum_probs=316.8

Q ss_pred             HHHhhhcccCCCceEEEeC-CCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeEeec
Q 013780           31 HFLFRNSASYSSKLALIDA-DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA  109 (436)
Q Consensus        31 ~~l~~~~~~~p~~~a~~~~-~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l  109 (436)
                      ++|.+.++++|+++++... ..++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl   83 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL   83 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence            5678888999999988742 236899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC---CCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN---LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|.++.+++.+++++++++++|+++...+.+....   ...+.....            .....+.+......  .....
T Consensus        84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~--~~~~~  149 (503)
T 4fuq_A           84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGP------------DGRGSLTDAAAGAS--EAFAT  149 (503)
T ss_dssp             CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCT------------TSCSHHHHHHHTSC--SCCCC
T ss_pred             CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecC------------CcccccchhhhcCC--CCcCc
Confidence            99999999999999999999999986544332221   111111111            00112222222222  23334


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++|+|||||||.||+|+++|+++.+++......+.+...  +++++.+|++|.+|+...++.++..|+++++
T Consensus       150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~  227 (503)
T 4fuq_A          150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPD--DVLIHALPIYHTHGLFVASNVTLFARGSMIF  227 (503)
T ss_dssp             CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCSSSHCCCCCCHHHHHHTTCEEEE
T ss_pred             CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCC--CEEEEeCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            45678999999999999999999999999999988877666655443  9999999999999986567889999999999


Q ss_pred             cCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecccccc
Q 013780          267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMT  346 (436)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~t  346 (436)
                      .+.+++..+++.++  ++|+++++|+++..|++........++++|.+++||+++++++.++|.+.++ .++++ .||+|
T Consensus       228 ~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~-~YG~T  303 (503)
T 4fuq_A          228 LPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLE-RYGMT  303 (503)
T ss_dssp             CSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEE-CCEET
T ss_pred             cCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccc-eEccc
Confidence            99999999999998  8999999999999999988777778899999999999999999999999997 89999 99999


Q ss_pred             ccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccccCC
Q 013780          347 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS  426 (436)
Q Consensus       347 E~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~  426 (436)
                      |++..++....  ....++++|+|+++++++|+|+++++++++|+.|||+|+|++++.|  ||++|+.|.+.|.   .++
T Consensus       304 E~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~---~~g  376 (503)
T 4fuq_A          304 ETNMNTSNPYD--GDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKG--YWRMPEKTKSEFR---DDG  376 (503)
T ss_dssp             TTEECBCCCSS--SCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCC--BTTCHHHHHHTBC---TTS
T ss_pred             ccCcccccCCC--CCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhh--hcCChhhhHhhhC---CCC
Confidence            99876543322  2567889999999999999998899999999999999999999999  9999999999883   578


Q ss_pred             eeecCCCCC
Q 013780          427 FIRGKDQQT  435 (436)
Q Consensus       427 ~~~tgD~~~  435 (436)
                      ||+|||+|+
T Consensus       377 ~~~TGDl~~  385 (503)
T 4fuq_A          377 FFITGDLGK  385 (503)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEcceeEE
Confidence            999999874

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=3.7e-60  Score=472.94  Aligned_cols=380  Identities=23%  Similarity=0.289  Sum_probs=317.4

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|+++
T Consensus        25 ~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~  102 (539)
T 1mdb_A           25 ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP  102 (539)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence            78999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchH--------HHHhhc-C-CCcEEeccCCccccccccccCcccchhhHHhh
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDL-N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      +|++|.++.+++.++++.++++++|+++...        ..+... . .+.+++..+.           .   .+.++..
T Consensus       103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~  168 (539)
T 1mdb_A          103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-----------E---EFLPLED  168 (539)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-----------T---TSEEGGG
T ss_pred             ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc-----------c---chhhhhh
Confidence            9999999999999999999999999987531        122111 1 2222221110           0   1222221


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH-HHH
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY  255 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~~  255 (436)
                      ...  .........++++++|+|||||||.||+|+++|+++..++........+..  ++++++.+|++|.+++.. .++
T Consensus       169 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~--~d~~l~~~p~~h~~~~~~~~~~  244 (539)
T 1mdb_A          169 LHT--EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH--STVYLAALPMAHNYPLSSPGVL  244 (539)
T ss_dssp             CCC--CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCT--TCEEEECSCTTSHHHHHSSHHH
T ss_pred             ccc--cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCC--CCEEEEeecccccchhhHHHHH
Confidence            111  111223456789999999999999999999999999988777666555533  399999999999999875 588


Q ss_pred             hhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCC
Q 013780          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (436)
Q Consensus       256 ~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~  335 (436)
                      .+|..|+++++.+.+++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.+++++.++ 
T Consensus       245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-  323 (539)
T 1mdb_A          245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-  323 (539)
T ss_dssp             HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-
T ss_pred             HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC-
Confidence            9999999999999999999999999999999999999999998876666668899999999999999999999999997 


Q ss_pred             CeeeeccccccccCCcccccCCCCCccCcCccccccCC-cEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhh
Q 013780          336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAG-VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVF  414 (436)
Q Consensus       336 ~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~-~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~  414 (436)
                      +++++ .||+||++..+. ..........+++|+|+++ .+++|+| ++++++++|+.|||+|+|++++.|  ||++|+.
T Consensus       324 ~~~~~-~YG~TE~~~~~~-~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~  398 (539)
T 1mdb_A          324 CTLQQ-VFGMAEGLVNYT-RLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRG--YYKAEEH  398 (539)
T ss_dssp             SEEEE-EEECTTSCEEEC-CTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSS--CTTCHHH
T ss_pred             CcEEE-EEcCCCCccccc-CCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchh--hcCChhh
Confidence            99999 999999653322 2222112356789999976 5899999 589999999999999999999999  9999999


Q ss_pred             hhhhccccccCCeeecCCCCC
Q 013780          415 TLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       415 ~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |.+.|.   .++||+|||+|+
T Consensus       399 t~~~f~---~~g~~~TGDlg~  416 (539)
T 1mdb_A          399 NAASFT---EDGFYRTGDIVR  416 (539)
T ss_dssp             HHHHBC---TTSCEEEEEEEE
T ss_pred             hhhhcc---CCCCeecCceEE
Confidence            999883   578999999874

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=7.2e-60  Score=473.91  Aligned_cols=388  Identities=22%  Similarity=0.274  Sum_probs=322.1

Q ss_pred             CCCchH-HHHhhhcccCCCceEEEeCC---CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHH
Q 013780           25 PSFSMV-HFLFRNSASYSSKLALIDAD---SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI  100 (436)
Q Consensus        25 ~~~ti~-~~l~~~~~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~  100 (436)
                      .++|+. ++|.++++++|+++|+++.+   .++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+
T Consensus        53 ~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~  132 (580)
T 3etc_A           53 ENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLH  132 (580)
T ss_dssp             SSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            347787 99999999999999998632   23789999999999999999999999999999999999999999999999


Q ss_pred             HhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchH--HHHhhc----C-C-CcEEeccCCccccccccccCcccchhh
Q 013780          101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW--DKVKDL----N-L-PAVLLGSKDKVSSSGLISRSSKIVSFH  172 (436)
Q Consensus       101 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (436)
                      ++|++++|+++.++.+++.+++++++++++|++.+..  ..+...    . . ..++....         ....++..+.
T Consensus       133 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~  203 (580)
T 3etc_A          133 KLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGG---------DVLEGWIDFR  203 (580)
T ss_dssp             HHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESS---------SCCTTCEEHH
T ss_pred             hCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCC---------ccccccccHH
Confidence            9999999999999999999999999999999987643  333221    1 1 22222211         1234556677


Q ss_pred             HHhhhcCCCCCCCC--CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHH
Q 013780          173 DLIELSGSVTDIPD--VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGL  250 (436)
Q Consensus       173 ~~~~~~~~~~~~~~--~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~  250 (436)
                      +.+.........+.  ....++++++|+|||||||.||+|.++|.++............+  ...+++++..|++|..++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  281 (580)
T 3etc_A          204 KELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNV--EDDGLHYTVADSGWGKCV  281 (580)
T ss_dssp             HHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCC--CTTCEEEECCCTTSTHHH
T ss_pred             HHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCC--CCCceEEEeCChHHHHHH
Confidence            76665442111111  34678999999999999999999999999888765543333333  233899999999998888


Q ss_pred             HHHHHhhccCCcEEEEc--CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHH
Q 013780          251 SVILYDQLQKGNCVVSM--GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED  328 (436)
Q Consensus       251 ~~~~~~~l~~G~~v~~~--~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~  328 (436)
                      +..++.++..|+++++.  ..+++..+++.++++++|+++++|++++.|.+.. ....++++||.+++||+++++++.++
T Consensus       282 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe~l~~~~~~~  360 (580)
T 3etc_A          282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNPEVFNR  360 (580)
T ss_dssp             HHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSSCCCHHHHHH
T ss_pred             HHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccCCCCHHHHHH
Confidence            76688899999999987  5789999999999999999999999999998863 34557899999999999999999999


Q ss_pred             HHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEec-----CCcc
Q 013780          329 CQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG-----PNVT  403 (436)
Q Consensus       329 ~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g-----~~~~  403 (436)
                      |++.++ +++++ .||+||++..++..+..  ..+++++|+|+|+++++|+|+ +|+++++|+.|||+|+|     +.++
T Consensus       361 ~~~~~g-~~i~~-~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~  435 (580)
T 3etc_A          361 FLEFTG-IKLME-GFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMDR-DGRLCEVGEEGEIVINTMEGKPVGLF  435 (580)
T ss_dssp             HHHHHS-CCCEE-EECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEECTTCCCTTCC
T ss_pred             HHHHhC-CeEec-ccccccccceeecCCCC--CCCCCccccCCCCCEEEEECC-CCCCCCCCCceEEEEecCCCCCCeee
Confidence            999887 99999 99999998766655443  567899999999999999995 79999999999999997     7899


Q ss_pred             cCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          404 PGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       404 ~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .|  ||++|+.|.+.|    .+|||+|||+|+
T Consensus       436 ~g--Y~~~p~~t~~~f----~~gwy~TGDlg~  461 (580)
T 3etc_A          436 VH--YGKDPERTEETW----HDGYYHTGDMAW  461 (580)
T ss_dssp             CE--ETTCHHHHHHHE----ETTEEEEEEEEE
T ss_pred             cc--ccCCHhHHHhhc----CCCEEecCcEEE
Confidence            99  999999999999    588999999874

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=5.2e-60  Score=502.89  Aligned_cols=415  Identities=36%  Similarity=0.569  Sum_probs=343.1

Q ss_pred             cceeecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Q 013780            9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN   88 (436)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n   88 (436)
                      ..++++..+...+|..  +|+.++|.++++++|+++|+++...++.+||+||.++++++|+.|+++|+++||+|+|+++|
T Consensus        45 ~~~~~~~~~~~~~p~~--~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n  122 (979)
T 3tsy_A           45 DVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPN  122 (979)
T ss_dssp             CCCBCCSSCCCCCCTT--SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSS
T ss_pred             CceeecCCCCCCCCCC--CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCC
Confidence            4456666666666655  89999999999999999999998767899999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC--CCcEEeccCCccccccccccCc
Q 013780           89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSS  166 (436)
Q Consensus        89 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  166 (436)
                      ++++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+....  ....++..+...    ......
T Consensus       123 s~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  198 (979)
T 3tsy_A          123 CPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNE----SVPIPE  198 (979)
T ss_dssp             CHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCT----TSCCCT
T ss_pred             CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcc----cccCCc
Confidence            99999999999999999999999999999999999999999999987655443321  122222222110    001112


Q ss_pred             ccchhhHHhhhcCCC-CCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh--ccCCCCcEEEechh
Q 013780          167 KIVSFHDLIELSGSV-TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE--LVGELDHVVLCVLP  243 (436)
Q Consensus       167 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~p  243 (436)
                      +...+.++....... .........++++++|+|||||||.||+|+++|+++...+........  +.-..++++++.+|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p  278 (979)
T 3tsy_A          199 GCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLP  278 (979)
T ss_dssp             TEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSC
T ss_pred             ccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECc
Confidence            334444444332210 122334567899999999999999999999999999887654332211  11223499999999


Q ss_pred             HHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcH
Q 013780          244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK  323 (436)
Q Consensus       244 ~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~  323 (436)
                      ++|.+++...++.++..|+++++.+++++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++
T Consensus       279 ~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~  358 (979)
T 3tsy_A          279 MFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGK  358 (979)
T ss_dssp             SSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCS
T ss_pred             hHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCH
Confidence            99999997678899999999999999999999999999999999999999999999888777789999999999999999


Q ss_pred             HHHHHHHhhCCCCeeeeccccccccCCcccccC---CCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecC
Q 013780          324 ELMEDCQKNIPGATIFQVGYGMTETCAPISLEN---PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP  400 (436)
Q Consensus       324 ~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~---~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~  400 (436)
                      ++.+++++.|+++++++ .||+||++.+++...   ......+.+++|+|+++++++|+|+++++++++|+.|||+|+|+
T Consensus       359 ~~~~~~~~~~~~~~l~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~  437 (979)
T 3tsy_A          359 ELEDAVNAKFPNAKLGQ-GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGH  437 (979)
T ss_dssp             SHHHHHHHHCTTCEEEE-CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEEST
T ss_pred             HHHHHHHHHCCCCeEEe-eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECC
Confidence            99999999998799999 999999987655431   12224567899999999999999988899999999999999999


Q ss_pred             CcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          401 NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       401 ~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .++.|  ||++|+.|.+.|   ..++||+|||+|+
T Consensus       438 ~v~~G--Y~~~p~~t~~~f---~~~g~~~TGDl~~  467 (979)
T 3tsy_A          438 QIMKG--YLNNPAATAETI---DKDGWLHTGDIGL  467 (979)
T ss_dssp             TSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred             Ccccc--ccCChhhhhhhc---cCCCcEEcCCEEE
Confidence            99999  999999999987   3678999999874

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.2e-59  Score=464.06  Aligned_cols=375  Identities=22%  Similarity=0.289  Sum_probs=311.8

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      +|+.++|.++++++|+++|+++...++++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus         2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   81 (504)
T 1t5h_X            2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (504)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence            57999999999999999999987556899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEE--ccchHHHH-hhcCCCcEEeccCCccccccccccCcccchhhHHhhhcC---C
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVIT--VPELWDKV-KDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG---S  180 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  180 (436)
                      +|++|.++.+++.+++++++++++++  +....+.+ .... ...++                   .++++.....   .
T Consensus        82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~  141 (504)
T 1t5h_X           82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARII-------------------FLGDLVRDGEPYSY  141 (504)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC-CCEEE-------------------EGGGTEETTEECCC
T ss_pred             EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc-cceeE-------------------EecchhhcCccccc
Confidence            99999999999999999999999999  76655554 3321 11111                   1222221110   0


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  260 (436)
                      ..........++++++|+|||||||.||+|+++|+++...+........+.....+++++.+|++|.+++...++.++..
T Consensus       142 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~  221 (504)
T 1t5h_X          142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALAL  221 (504)
T ss_dssp             SCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHT
T ss_pred             CCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHc
Confidence            01111134567899999999999999999999999999887766555544223449999999999999986578899999


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCee
Q 013780          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (436)
Q Consensus       261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i  338 (436)
                      |+++++.+.+++..+++.++++++|+++++|+++..|.+...  ....++++||.+++||+++++++.++|++.++ ..+
T Consensus       222 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~  300 (504)
T 1t5h_X          222 DGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEK  300 (504)
T ss_dssp             TCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC-SEE
T ss_pred             CceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC-cce
Confidence            999999999999999999999999999999999999988652  24457899999999999999999999999997 899


Q ss_pred             eeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCC---ccCCCCCceEEEEe-cCCcccCccccCChhh
Q 013780          339 FQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL---KPLPPNQLGEIWVR-GPNVTPGIVYINFFVF  414 (436)
Q Consensus       339 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~---~~~~~g~~Gel~v~-g~~~~~g~~Y~~~~~~  414 (436)
                      ++ .||+||++ .+....    ..+.+++|.|.++++++|+|. ++   +++++|+.|||+++ |+.++.|  ||++|+.
T Consensus       301 ~~-~YG~TE~~-~~~~~~----~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~G--Y~~~~~~  371 (504)
T 1t5h_X          301 VN-IYGTTEAM-NSLYMR----QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVG--YLNQPQA  371 (504)
T ss_dssp             EE-EEEETTTE-EEEEEE----SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCC--BTTCHHH
T ss_pred             ee-eecccccc-cccccc----CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeece--ecCCchh
Confidence            99 99999983 222221    345688999999999999995 55   89999999999999 9999999  9999999


Q ss_pred             hhhhccccccCCeeecCCCCC
Q 013780          415 TLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       415 ~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |.+.|    .+|||+|||+|+
T Consensus       372 t~~~f----~~g~~~TGDlg~  388 (504)
T 1t5h_X          372 TAEKL----QDGWYRTSDVAV  388 (504)
T ss_dssp             HHHHE----ETTEEEEEEEEE
T ss_pred             hhhhh----cCCccccCcEEE
Confidence            99998    578999999873

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=3.9e-59  Score=465.77  Aligned_cols=385  Identities=23%  Similarity=0.324  Sum_probs=316.1

Q ss_pred             CchHHHHhhhcccCCCceEEEeCC--CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCC
Q 013780           27 FSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA  104 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~  104 (436)
                      .|+.++|.++++++|+++|+++.+  .++++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus        18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga   97 (541)
T 1v25_A           18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA   97 (541)
T ss_dssp             CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence            789999999999999999998532  247899999999999999999999999999999999999999999999999999


Q ss_pred             eEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchhhHHhhhcC
Q 013780          105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (436)
Q Consensus       105 ~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (436)
                      +++|++|.++.+++.+++++++++++|+++...+.+....     .+.++...+.         ...+...++++.....
T Consensus        98 v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  168 (541)
T 1v25_A           98 VLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEK---------APEGYLAYEEALGEEA  168 (541)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSC---------CCTTCEEHHHHCCSCC
T ss_pred             EEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCC---------CCcccccHHHHhhccC
Confidence            9999999999999999999999999999988766554321     1222222110         0112334555543322


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhcc
Q 013780          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (436)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~  259 (436)
                        .   .....++++++|+|||||||.||+|++||+++..++........+.-...|++++.+|++|.+++. .++.++.
T Consensus       169 --~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~  242 (541)
T 1v25_A          169 --D---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPYAATL  242 (541)
T ss_dssp             --C---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHHHHHH
T ss_pred             --C---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHHHHHh
Confidence              1   134467899999999999999999999999998765432111112122349999999999999985 6778899


Q ss_pred             CCcEEEEcC-CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCee
Q 013780          260 KGNCVVSMG-KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (436)
Q Consensus       260 ~G~~v~~~~-~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i  338 (436)
                      .|+++++.+ .+++..+++.++++++|+++++|+++..|.+.......++++||.+++||+++++++.+++ +.++ +++
T Consensus       243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g-~~~  320 (541)
T 1v25_A          243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMG-VEV  320 (541)
T ss_dssp             HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTT-CEE
T ss_pred             cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhC-Cce
Confidence            999999986 4799999999999999999999999999988766555678999999999999999999999 6675 999


Q ss_pred             eeccccccccCCcccccCCCCC---------ccCcCccccccCCcEEEEEeCCCCccCCC--CCceEEEEecCCcccCcc
Q 013780          339 FQVGYGMTETCAPISLENPLVG---------VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPGIV  407 (436)
Q Consensus       339 ~~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~--g~~Gel~v~g~~~~~g~~  407 (436)
                      ++ .||+||++.+++.......         .....++|+|+|+++++|+|+ ++++++.  ++.|||+++|++++.|  
T Consensus       321 ~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~G--  396 (541)
T 1v25_A          321 RQ-GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGG--  396 (541)
T ss_dssp             EE-EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSS--
T ss_pred             ee-cccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECC-CCCCCCCCCCcceEEEEeCcchhcc--
Confidence            99 9999999877665433210         124678999999999999995 7888884  3689999999999999  


Q ss_pred             ccCChhhhhhhccccccCCeeecCCCCC
Q 013780          408 YINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       408 Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ||++|+.|.+.|.   .+|||+|||+|+
T Consensus       397 Y~~~p~~t~~~f~---~~g~~~TGDlg~  421 (541)
T 1v25_A          397 YYGNEEATRSALT---PDGFFRTGDIAV  421 (541)
T ss_dssp             CBTCHHHHHTTBC---TTSCEEEEEEEE
T ss_pred             ccCChhhhhhhcc---CCCCeEcCCEEE
Confidence            9999999999882   488999999874

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=4.6e-59  Score=464.60  Aligned_cols=384  Identities=21%  Similarity=0.328  Sum_probs=310.7

Q ss_pred             Cc-hHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           27 FS-MVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        27 ~t-i~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      +| +.++|.++++ +|+++|+++.  +.++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus        23 ~~~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~   99 (529)
T 2v7b_A           23 FNFAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVV   99 (529)
T ss_dssp             CCHHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCE
T ss_pred             eeHHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCce
Confidence            55 7888888888 9999999987  689999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----C-CcEEeccCCccccccccccCcccchhhHHhhhcC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (436)
                      ++|+++.++.+++.+++++++++++|+++...+.+....     . ..+++.....       ........++++.....
T Consensus       100 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  172 (529)
T 2v7b_A          100 PVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRE-------SEPRLAPLFEELIDAAA  172 (529)
T ss_dssp             EEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-------------CCCBHHHHHHTSC
T ss_pred             EEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccc-------cccccccchhhhhccCC
Confidence            999999999999999999999999999987765544321     1 2222211100       00001224555554322


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHH-HhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhc
Q 013780          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL  258 (436)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l  258 (436)
                        .........++++++|+|||||||.||+|+++|+++ ............+  ...+++++.+|++|.+++...++.++
T Consensus       173 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~~~~~~~l  248 (529)
T 2v7b_A          173 --PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI--AENDVVFSAAKLFFAYGLGNGLTFPL  248 (529)
T ss_dssp             --CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCC--CTTCEEEESSCTTSHHHHHHHTHHHH
T ss_pred             --CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCC--CCCcEEEEeecHHHHHHHHHHHHHHH
Confidence              222233456789999999999999999999999999 4543322222222  23399999999999999976678899


Q ss_pred             cCCcEEEEc-CCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCe
Q 013780          259 QKGNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGAT  337 (436)
Q Consensus       259 ~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~  337 (436)
                      ..|+++++. +.+++..+++.++++++|+++++|+++..+.+..........+||.+++||+++++++.+++++.++ ++
T Consensus       249 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g-~~  327 (529)
T 2v7b_A          249 SVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFG-CE  327 (529)
T ss_dssp             HHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHS-CC
T ss_pred             hcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhC-Cc
Confidence            999999988 6789999999999999999999999999998875544331248999999999999999999999986 99


Q ss_pred             eeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhh
Q 013780          338 IFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLF  417 (436)
Q Consensus       338 i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~  417 (436)
                      +++ .||+||++++++.....  ....+++|+|+++++++|+| ++|+++++|+.|||+|+|++++.|  ||++|+.+.+
T Consensus       328 i~~-~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~g--Y~~~~~~t~~  401 (529)
T 2v7b_A          328 ILD-GIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVM--YWNNREKSRA  401 (529)
T ss_dssp             EEE-EEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCC--BTTCHHHHHH
T ss_pred             eee-eEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccc--cCCChHHHHH
Confidence            999 99999997766554433  35678999999999999999 589999999999999999999999  9999999999


Q ss_pred             hccccccCCeeecCCCCC
Q 013780          418 LWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       418 ~~~~~~~~~~~~tgD~~~  435 (436)
                      .|    .++||+|||+|+
T Consensus       402 ~f----~~~~~~TGDl~~  415 (529)
T 2v7b_A          402 TF----LGEWIRSGDKYC  415 (529)
T ss_dssp             HE----ETTEEEEEEEEE
T ss_pred             hh----hcCCcccCceEE
Confidence            98    488999999863

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=3.1e-59  Score=463.67  Aligned_cols=378  Identities=20%  Similarity=0.267  Sum_probs=319.2

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      ||+.++|.++++++|+++|+++.  ++++||+||.++++++|+.|.+. |+++|++|+++++|++++++++|||+++|++
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~   78 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP   78 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence            68999999999999999999987  79999999999999999999874 8889999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (436)
                      ++|+++.++.+++.+++++++++++|+++......  .                   ........+.++...... ....
T Consensus        79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~-~~~~  136 (511)
T 3e7w_A           79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA--V-------------------GQQIQTVSAEELLENEGG-SVSQ  136 (511)
T ss_dssp             EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC--C-------------------CCSSCEEEHHHHHTSCSC-CCCG
T ss_pred             EEecCCCChHHHHHHHHHhCCCCEEEecccccchh--c-------------------ccccceecHhhhhccccC-Cccc
Confidence            99999999999999999999999999975432110  0                   001112234444433221 1122


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (436)
Q Consensus       186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~  265 (436)
                      .....++++++|+|||||||.||+|++||+++...+........+...  +++++.+|++|..++. .++.++..|++++
T Consensus       137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~  213 (511)
T 3e7w_A          137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGG--KIFLNQAPFSFDLSVM-DLYPCLQSGGTLH  213 (511)
T ss_dssp             GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTT--CEEEECSCTTSTHHHH-HHHHHHHTTCEEE
T ss_pred             cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCcc--ceEEEeCCccHHHHHH-HHHHHHhcCCEEE
Confidence            234567899999999999999999999999999988776666555433  9999999999999985 7899999999999


Q ss_pred             EcCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780          266 SMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG  342 (436)
Q Consensus       266 ~~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~  342 (436)
                      +.+.   +++..+++.++++++|++.++|+++..+++........++++|.+++||+++++++.+++++.|+++++++ .
T Consensus       214 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~-~  292 (511)
T 3e7w_A          214 CVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFN-T  292 (511)
T ss_dssp             ECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE-C
T ss_pred             EcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEe-C
Confidence            9875   68999999999999999999999999999987777778899999999999999999999999997799999 9


Q ss_pred             ccccccCCcccccCCCC---CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhc
Q 013780          343 YGMTETCAPISLENPLV---GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW  419 (436)
Q Consensus       343 YG~tE~~~~~~~~~~~~---~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~  419 (436)
                      ||+||+++.++......   ......++|+|+++++++|+|+ +|+++++|+.|||+|+|++++.|  ||++|+.|.+.|
T Consensus       293 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f  369 (511)
T 3e7w_A          293 YGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDE-EGQPLPEGEKGEIVIAGPSVSRG--YLGEPELTEKAF  369 (511)
T ss_dssp             CCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCC--BTTCHHHHHHHE
T ss_pred             cccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECC-CCCCCCCCCceEEEEecCccChh--hCCCcccchhhh
Confidence            99999987766432221   1235567999999999999995 79999999999999999999999  999999999988


Q ss_pred             cccccCCeeecCCCCC
Q 013780          420 GCEHTDSFIRGKDQQT  435 (436)
Q Consensus       420 ~~~~~~~~~~tgD~~~  435 (436)
                      ...+.+.||+|||+|+
T Consensus       370 ~~~~g~~~~~TGDlg~  385 (511)
T 3e7w_A          370 FSHEGQWAYRTGDAGF  385 (511)
T ss_dssp             EESSSSEEEEEEEEEE
T ss_pred             cCCCCCEEEeCCCeEE
Confidence            3222233799999874

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=2.7e-59  Score=465.60  Aligned_cols=380  Identities=17%  Similarity=0.177  Sum_probs=317.1

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.+.|.++++++|+++|+++.  ++++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|+++
T Consensus         4 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (521)
T 3l8c_A            4 KDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY   81 (521)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            67999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|+++.++.+++.++++.++++++|++++....+..    ..++.                ...+........  .....
T Consensus        82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~----~~~~~----------------~~~~~~~~~~~~--~~~~~  139 (521)
T 3l8c_A           82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEG----ISLVS----------------LSEIESAKLAEM--PYERT  139 (521)
T ss_dssp             EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTT----SEEEE----------------HHHHHHHHHHTC--CCCCS
T ss_pred             EecCccccHHHHHHHHHhCCCCEEEecCcccccccc----Ccccc----------------hhhhhhcccccC--CcccC
Confidence            999999999999999999999999998764322111    01110                011111111111  22233


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++|+|||||||.||+|++||+++.+.+........+.....+++++..|++|..++. .++.++..|+++++
T Consensus       140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~~~~~  218 (521)
T 3l8c_A          140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGGTLFA  218 (521)
T ss_dssp             SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTCEEEE
T ss_pred             CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCCEEEE
Confidence            45678999999999999999999999999999876655444323333448999999999988875 78889999999999


Q ss_pred             cCCC---CHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          267 MGKF---DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       267 ~~~~---~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      .+..   ++..+++.+.++++|++.++|+++..+..........+++||.+++||+++++++.+++.+.++++++++ .|
T Consensus       219 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~-~Y  297 (521)
T 3l8c_A          219 LPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIIN-AY  297 (521)
T ss_dssp             CCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE-EE
T ss_pred             cCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEe-Cc
Confidence            8754   8999999999999999999999999998887767778899999999999999999999999997799999 99


Q ss_pred             cccccCCcccccCCCCC---ccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780          344 GMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  420 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~  420 (436)
                      |+||+++.++.......   .....++|+|+++++++|+| ++|+++++|+.|||+|+|++++.|  ||++|+.+.+.|.
T Consensus       298 G~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~  374 (521)
T 3l8c_A          298 GPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKG--YLNNPEKTAEAFF  374 (521)
T ss_dssp             CCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSC--BTTCHHHHHHHEE
T ss_pred             CccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChh--hcCCchHhhccCc
Confidence            99999887664322211   23567899999999999999 589999999999999999999999  9999999999884


Q ss_pred             ccccCCeeecCCCCC
Q 013780          421 CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ~~~~~~~~~tgD~~~  435 (436)
                      ..+.++||+|||+|+
T Consensus       375 ~~~~~~~~~TGDlg~  389 (521)
T 3l8c_A          375 TFKGQPAYHTGDIGS  389 (521)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             CCCCceeeeCCCEEE
Confidence            445678999999873

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=5.3e-59  Score=461.98  Aligned_cols=375  Identities=24%  Similarity=0.342  Sum_probs=311.6

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      ++|+.++|.++++++|+++|+++.  ++++||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|++
T Consensus         5 ~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~   82 (509)
T 3ivr_A            5 DFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI   82 (509)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred             cCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence            489999999999999999999997  799999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhc----C-CCcEEeccCCccccccccccCcccchhhHHhhhcCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS  180 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (436)
                      ++|++|.++.+++.+++++++++++|++....+.+...    . ...++...+             ....+.++......
T Consensus        83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~  149 (509)
T 3ivr_A           83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD-------------GSGPFAPFKDLASD  149 (509)
T ss_dssp             EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC-------------CCSSCEEGGGTCCC
T ss_pred             EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC-------------CCcChhhHhhccCC
Confidence            99999999999999999999999999998876553222    1 122222111             11122222221111


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  260 (436)
                       .........++++++|+|||||||.||+|+++|+++...+......+.+...  +++++.+|++|.+++...+...+..
T Consensus       150 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~~~~  226 (509)
T 3ivr_A          150 -TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEA--DVNLGMLPLFHVTGLGLMLTLQQAG  226 (509)
T ss_dssp             -SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred             -CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCC--cEEEEeCCCcchhHHHHHHHHHHhC
Confidence             2233445678999999999999999999999999999988877666655443  9999999999999997444445555


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeee
Q 013780          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ  340 (436)
Q Consensus       261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~  340 (436)
                      |++++ ...+++..+++.++++++|++.++|+++..|++..  ...++++||.++.+|++   ++.+.+.+.++++++++
T Consensus       227 g~~~~-~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~  300 (509)
T 3ivr_A          227 GASVI-AAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWA  300 (509)
T ss_dssp             CEEEE-CSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEE
T ss_pred             CcEEE-ecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEc
Confidence            55555 44889999999999999999999999999998876  34567899999999987   89999999997799999


Q ss_pred             ccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780          341 VGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  420 (436)
Q Consensus       341 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~  420 (436)
                       .||+||++++++.....   ....++|+|+++++++|+|+ +++++++|+.|||+|+|++++.|  ||++|+.+.+.| 
T Consensus       301 -~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~g--Y~~~~~~t~~~f-  372 (509)
T 3ivr_A          301 -TFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDA-EDRPLPPGEVGEIVLRGPTVFKG--YWNNAAATQHAF-  372 (509)
T ss_dssp             -EEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECT-TSCBCCTTCCEEEEEESTTSCCE--ETTCHHHHHHHT-
T ss_pred             -ccCccccccccccCccc---cCCCcccccCCCcEEEEECC-CCCCCCCCCceEEEEecCCcccc--ccCCHHHhHHHh-
Confidence             99999998876654332   33456999999999999995 79999999999999999999999  999999999999 


Q ss_pred             ccccCCeeecCCCCC
Q 013780          421 CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 ~~~~~~~~~tgD~~~  435 (436)
                         .++||+|||+|+
T Consensus       373 ---~~g~~~TGDl~~  384 (509)
T 3ivr_A          373 ---RNGWHHTGDMGR  384 (509)
T ss_dssp             ---GGGSEEEEEEEE
T ss_pred             ---hcCCcccccEEE
Confidence               588999999873

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=2.7e-58  Score=461.89  Aligned_cols=382  Identities=19%  Similarity=0.239  Sum_probs=316.7

Q ss_pred             Cc-hHHHHhhhccc-----CCCceEEEeCC-C--CccccHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCCCcHHHHH
Q 013780           27 FS-MVHFLFRNSAS-----YSSKLALIDAD-S--DESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICF   96 (436)
Q Consensus        27 ~t-i~~~l~~~~~~-----~p~~~a~~~~~-~--~~~~Ty~el~~~~~~la~~L~~~-gv~~gd~V~l~~~n~~~~~~~~   96 (436)
                      ++ +.++|.+++++     +|+++|+++.+ +  ++.+||+||.++++++|+.|.+. |+++||+|+|+++|++++++++
T Consensus        37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~  116 (570)
T 3c5e_A           37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI  116 (570)
T ss_dssp             CCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred             ccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence            44 46888888888     99999998742 1  37899999999999999999998 9999999999999999999999


Q ss_pred             HHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchh
Q 013780           97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSF  171 (436)
Q Consensus        97 lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (436)
                      |||+++|++++|+++.++.+++.++++.++++++|+++...+.+....     .+.++...+         ....++..+
T Consensus       117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~  187 (570)
T 3c5e_A          117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE---------KSCDGWLNF  187 (570)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS---------SCCTTSEEH
T ss_pred             HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc---------cCccccccH
Confidence            999999999999999999999999999999999999988766554321     122222211         011234456


Q ss_pred             hHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHh--hhhhHHhhhhccCCCCcEEEechhHHHHHH
Q 013780          172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFG  249 (436)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g  249 (436)
                      ++++....  .........++++++|+|||||||.||+|+++|+ ++.  ..... ....+  ...|++++.+|++|.++
T Consensus       188 ~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~--~~~d~~~~~~p~~~~~~  261 (570)
T 3c5e_A          188 KKLLNEAS--TTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL--QASDIMWTISDTGWILN  261 (570)
T ss_dssp             HHHHHHSC--SCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC--CTTCEEEECCCTTSHHH
T ss_pred             HHHhhccc--ccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC--CCCceEEEcCchHHHHH
Confidence            66665443  2223344567899999999999999999999999 444  22221 22222  23399999999999999


Q ss_pred             HHHHHHhhccCCcEEEEcC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHH
Q 013780          250 LSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME  327 (436)
Q Consensus       250 ~~~~~~~~l~~G~~v~~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~  327 (436)
                      +...++.++..|+++++.+  .+++..+++.++++++|+++++|+++..|.+.. ....++++||.+++||+++++++.+
T Consensus       262 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~  340 (570)
T 3c5e_A          262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLE  340 (570)
T ss_dssp             HHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHH
T ss_pred             HHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHH
Confidence            8767889999999999985  689999999999999999999999999998873 3344688999999999999999999


Q ss_pred             HHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEe-----cCCc
Q 013780          328 DCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR-----GPNV  402 (436)
Q Consensus       328 ~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~-----g~~~  402 (436)
                      +|++.++ +++++ .||+||++..++.....  ..+.+++|+|+++++++|+|+ +++++++|+.|||+++     |+.+
T Consensus       341 ~~~~~~g-~~i~~-~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d~-~g~~~~~G~~GEl~v~~~~~~g~~v  415 (570)
T 3c5e_A          341 NWRAQTG-LDIRE-SYGQTETGLTCMVSKTM--KIKPGYMGTAASCYDVQIIDD-KGNVLPPGTEGDIGIRVKPIRPIGI  415 (570)
T ss_dssp             HHHHHHS-CCCEE-EEEETTTEEEEECCTTS--CCCTTCCCEECTTCCEEEECT-TSCBCCTTCCEEEEEECSSBCCTTC
T ss_pred             HHHHHhC-Cchhh-ccchhhcccceecCccc--ccCCCcccccCCCceEEEECC-CCCCCCCCCCCeeEEeccCCCCchh
Confidence            9999886 89999 99999998665544332  457789999999999999994 8999999999999999     9999


Q ss_pred             ccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          403 TPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       403 ~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      +.|  ||++|+.|.+.|    .++||+|||+|+
T Consensus       416 ~~G--Y~~~~~~t~~~f----~~~~~~TGDlg~  442 (570)
T 3c5e_A          416 FSG--YVDNPDKTAANI----RGDFWLLGDRGI  442 (570)
T ss_dssp             CCE--ETTCHHHHHHTE----ETTEEEEEEEEE
T ss_pred             hcc--ccCChhHhhhhh----cCCccccceeEE
Confidence            999  999999999998    588999999873

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.4e-58  Score=464.65  Aligned_cols=373  Identities=18%  Similarity=0.242  Sum_probs=309.0

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      ..++.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus        74 ~~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~  151 (570)
T 4gr5_A           74 GACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGG  151 (570)
T ss_dssp             SCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred             cCCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence            378999999999999999999987  789999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (436)
                      ++|++|.++.+++.+++++++++++|++......+...   ..+...+                   .......  ....
T Consensus       152 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~--~~~~  207 (570)
T 4gr5_A          152 YTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT---TTLYVED-------------------EAASDAP--AGNL  207 (570)
T ss_dssp             EEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS---EEEECCC----------------------------CCCC
T ss_pred             EEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC---cceeeec-------------------ccccccc--cccc
Confidence            99999999999999999999999999987654332211   1111111                   0000001  1222


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (436)
Q Consensus       186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~  265 (436)
                      .....++++++|+|||||||.||+|+++|+++.+..... ....+  ..++++++.+|++|..+.. .++.++..|++++
T Consensus       208 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~--~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  283 (570)
T 4gr5_A          208 ATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYAGF--GPDEVFLQCSPVSWDAFGL-ELFGALLFGARCV  283 (570)
T ss_dssp             CCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSSCC--STTCEEEECSCTTSSTHHH-HHHHHHTTTCEEE
T ss_pred             CCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhcCC--CCCCEEEEecCccHHHHHH-HHHHHHhcCCEEE
Confidence            344578999999999999999999999999997664431 11222  2339999999998866654 7888999999999


Q ss_pred             EcC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          266 SMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       266 ~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      +.+  .+++..+++.++++++|++.++|+++..|.+...   ..+++||.+++||+++++++.+++.+.++++++++ .|
T Consensus       284 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~-~Y  359 (570)
T 4gr5_A          284 LQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN-GY  359 (570)
T ss_dssp             ECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE-EE
T ss_pred             EcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE-ee
Confidence            986  4689999999999999999999999999987643   35789999999999999999999999998799999 99


Q ss_pred             cccccCCcccccCCCC--CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc-
Q 013780          344 GMTETCAPISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG-  420 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~--~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~-  420 (436)
                      |+||++++++......  ......++|+|+++++++|+| ++++++++|++|||+|+|++++.|  ||++|+.|.+.|. 
T Consensus       360 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~  436 (570)
T 4gr5_A          360 GPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHG--YVSRPALTAERFVA  436 (570)
T ss_dssp             CCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCE--ETTCHHHHHHHEEE
T ss_pred             chhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchh--cCCCchhhhccccc
Confidence            9999988766443221  133456799999999999999 589999999999999999999999  9999999999882 


Q ss_pred             -cc---ccCCeeecCCCCC
Q 013780          421 -CE---HTDSFIRGKDQQT  435 (436)
Q Consensus       421 -~~---~~~~~~~tgD~~~  435 (436)
                       .+   ..++||+|||+|+
T Consensus       437 ~~~~~~~~~~w~~TGDlg~  455 (570)
T 4gr5_A          437 DPFAGPGGERMYRTGDLAR  455 (570)
T ss_dssp             CTTCCSSCCEEEEEEEEEE
T ss_pred             CCCCCCCCCEEEeCCCeEE
Confidence             11   2347999999873

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=3e-58  Score=468.38  Aligned_cols=405  Identities=20%  Similarity=0.232  Sum_probs=321.6

Q ss_pred             CcCCCCCCCchHHHHhhhcccCCCceEEEeCC----CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH
Q 013780           19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI   94 (436)
Q Consensus        19 ~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~   94 (436)
                      .|+++..-.++.++|.++++++|+++|+++..    .++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++
T Consensus        68 ~wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vv  147 (652)
T 1pg4_A           68 KWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAV  147 (652)
T ss_dssp             EESTTCEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHH
T ss_pred             EECCCCChhHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence            44544321346677888889999999999732    24789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHH---------HHh----hc---CCCcEEeccCCcccc
Q 013780           95 CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVK----DL---NLPAVLLGSKDKVSS  158 (436)
Q Consensus        95 ~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~----~~---~~~~~~~~~~~~~~~  158 (436)
                      ++|||+++|++++|+++.++.+++.+++++++++++|+++....         .+.    ..   ..+.+++...... .
T Consensus       148 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~-~  226 (652)
T 1pg4_A          148 AMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS-D  226 (652)
T ss_dssp             HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCC-C
T ss_pred             HHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCC-c
Confidence            99999999999999999999999999999999999999875421         111    11   1122222211000 0


Q ss_pred             ccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhh-HHhhhhccCCCCcE
Q 013780          159 SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLM-ISAHQELVGELDHV  237 (436)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~~~~~  237 (436)
                      ..  ........+++++....  .........++++++|+|||||||.||||+++|++++.+... ......+.  .+|+
T Consensus       227 ~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~--~~d~  300 (652)
T 1pg4_A          227 ID--WQEGRDLWWRDLIEKAS--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH--PGDI  300 (652)
T ss_dssp             CC--CCBTTEEEHHHHHTTSC--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCC--TTCE
T ss_pred             cc--ccCCCceeHHHHHhhcC--CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCC--CCCE
Confidence            00  00112235666665433  222334456789999999999999999999999998776532 22333332  3399


Q ss_pred             EEechhHHHHHHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCccCCCcc
Q 013780          238 VLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSL  311 (436)
Q Consensus       238 ~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l  311 (436)
                      +++..|++|.+++...++.+|..|+++++.+.    +++..+++.++++++|+++++|+++..|.+...  ....++++|
T Consensus       301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sL  380 (652)
T 1pg4_A          301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL  380 (652)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTC
T ss_pred             EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCce
Confidence            99999999999996678899999999999864    589999999999999999999999999998764  344578999


Q ss_pred             eEEEecCCCCcHHHHHHHHhhCC--CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCC
Q 013780          312 KLVGSGAAPLGKELMEDCQKNIP--GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP  389 (436)
Q Consensus       312 r~i~~gg~~l~~~~~~~~~~~~~--~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~  389 (436)
                      |.+++||+++++++.+++.+.++  ++++++ .||+||+++.++...+.....+++++|+|++|++++|+|+ +|++++.
T Consensus       381 r~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~-~g~~v~~  458 (652)
T 1pg4_A          381 RILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEG  458 (652)
T ss_dssp             CEEEEESSCCCHHHHHHHHHHTTTTCSCEEE-EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCBCCS
T ss_pred             EEEEEecCCCCHHHHHHHHHHhCCCCCcEEc-cccCcccccceecCCCCCcCccCCccccCcCCCeEEEECC-CCCCcCC
Confidence            99999999999999999999886  388999 9999999887766544333567899999999999999994 8999999


Q ss_pred             CCceEEEEec--CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          390 NQLGEIWVRG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       390 g~~Gel~v~g--~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |+.|||+|+|  |.++.|  ||++|+.+.+.+- -..+|||+|||+|+
T Consensus       459 g~~GEl~i~g~~p~~~~g--Y~~~~e~~~~~~~-~~~~g~y~TGDlg~  503 (652)
T 1pg4_A          459 ATEGNLVITDSWPGQART--LFGDHERFEQTYF-STFKNMYFSGDGAR  503 (652)
T ss_dssp             SEEEEEEECSCCTTCCCE--ETTCHHHHHHHHH-SSSTTSEEEEEEEE
T ss_pred             CceEEEEEccCCCchhhh--hcCCHHHHHhhhh-hcCCCEEECCcEEE
Confidence            9999999999  789999  9999998887651 11367999999873

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=4e-58  Score=459.91  Aligned_cols=371  Identities=18%  Similarity=0.239  Sum_probs=304.9

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .|+.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|+++
T Consensus        39 ~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~  116 (563)
T 1amu_A           39 KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY  116 (563)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence            78999999999999999999987  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      +|++|.++.+++.+++++++++++|++......+........+...+.           .   .+    ....  .....
T Consensus       117 vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~----~~~~--~~~~~  176 (563)
T 1amu_A          117 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEE-----------D---TI----KIRE--GTNLH  176 (563)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCC-----------S---TT----TTSC--CSCCC
T ss_pred             EEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecc-----------h---hh----cccc--CccCC
Confidence            999999999999999999999999999877665544432211111110           0   00    0000  11112


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++++|+|||||||.||+|++||+++.+.+........+..  .|++++.+|++|..++. .++.++..|+++++
T Consensus       177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v~  253 (563)
T 1amu_A          177 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTE--KDRIGQFASISFDASVW-EMFMALLTGASLYI  253 (563)
T ss_dssp             CCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCT--TCEEEECSCTTSTHHHH-HHHHHHTTTCEEEE
T ss_pred             CCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCC--CCEEEEeCCccHHHHHH-HHHHHHHCCCEEEE
Confidence            3346789999999999999999999999999887766555444433  39999999999998885 77889999999999


Q ss_pred             cCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       267 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      .+.   +++..+++.++++++|++.++|+++..|...      .+++||.+++||+++++++.++|++.   +++++ .|
T Consensus       254 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~-~Y  323 (563)
T 1amu_A          254 ILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYIN-AY  323 (563)
T ss_dssp             CCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEE-EE
T ss_pred             cChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEE-EE
Confidence            865   6899999999999999999999998877432      46789999999999999999999874   78999 99


Q ss_pred             cccccCCcccccCCCC-CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc--
Q 013780          344 GMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--  420 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~--  420 (436)
                      |+||++.+++...... ......++|+|+++++++|+| +++++++.|+.|||+|+|++++.|  ||++|+.|.+.|.  
T Consensus       324 G~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~pe~t~~~f~~~  400 (563)
T 1amu_A          324 GPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARG--YWKRPELTSQKFVDN  400 (563)
T ss_dssp             CCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCE--ETTCHHHHHHHEEEC
T ss_pred             CcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChh--hCCCchhhhhhcccC
Confidence            9999987666533221 123567899999999999999 589999999999999999999999  9999999999882  


Q ss_pred             -ccccCCeeecCCCCC
Q 013780          421 -CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 -~~~~~~~~~tgD~~~  435 (436)
                       +...++||+|||+|+
T Consensus       401 ~~~~g~~w~~TGDlg~  416 (563)
T 1amu_A          401 PFVPGEKLYKTGDQAR  416 (563)
T ss_dssp             SSSTTSEEEEEEEEEE
T ss_pred             CCCCCCEEEecCCEEE
Confidence             223457999999874

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.7e-57  Score=460.74  Aligned_cols=381  Identities=22%  Similarity=0.287  Sum_probs=318.4

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      +.|+.++|.++++  |+++|+++.  ++++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus        26 ~~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~  101 (617)
T 3rg2_A           26 DLPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA  101 (617)
T ss_dssp             CCCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             cCCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence            3899999999988  999999987  789999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchH--------HHHh-hcC-CCcEEeccCCccccccccccCcccchhhHHh
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVK-DLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLI  175 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (436)
                      +||++|.++.+++.++++++++++++++....        ..+. ... ...+....+            .....+.+..
T Consensus       102 ~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  169 (617)
T 3rg2_A          102 PVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND------------SGEHNLQDAI  169 (617)
T ss_dssp             EEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETC------------CSTTBHHHHH
T ss_pred             EccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccc------------ccccchhhhh
Confidence            99999999999999999999999999987543        1111 111 222222111            1112233333


Q ss_pred             hhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHH-HH
Q 013780          176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-IL  254 (436)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~-~~  254 (436)
                      ....  .........++++++|+|||||||.||+|+++|+++.+.+........+...  +++++.+|++|.+++.. .+
T Consensus       170 ~~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~--~~~l~~~p~~~~~~~~~~~~  245 (617)
T 3rg2_A          170 NHPA--EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQ--TRYLCAIPAAHNYAMSSPGS  245 (617)
T ss_dssp             HSCC--SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTT--CEEEECSCTTSHHHHHSSHH
T ss_pred             cccc--cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCc--ceEEEeccchhhhhhhHHHH
Confidence            3322  2233445568899999999999999999999999999988877666655443  99999999999998864 48


Q ss_pred             HhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCc--cCCCcceEEEecCCCCcHHHHHHHHhh
Q 013780          255 YDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKN  332 (436)
Q Consensus       255 ~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~lr~i~~gg~~l~~~~~~~~~~~  332 (436)
                      +.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+......  ..+++||.+++||+++++++.+++.+.
T Consensus       246 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~  325 (617)
T 3rg2_A          246 LGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAE  325 (617)
T ss_dssp             HHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHH
Confidence            899999999999988999999999999999999999999999887644332  368999999999999999999999999


Q ss_pred             CCCCeeeeccccccccCCcccccCCCCCccCcCcccccc-CCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCC
Q 013780          333 IPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINF  411 (436)
Q Consensus       333 ~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~  411 (436)
                      ++ +++++ .||+||++..++..... ......++|+|+ ++++++|+| +++++++.|++|||+|+|+.++.|  ||++
T Consensus       326 ~~-~~~~~-~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~G--Y~~~  399 (617)
T 3rg2_A          326 IG-CQLQQ-VFGMAEGLVNYTRLDDS-AEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRG--YYKS  399 (617)
T ss_dssp             TC-SEEEE-EEEETTEEEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSC--CTTC
T ss_pred             hC-CcEEE-EeccCcceeecccCCCc-ccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccch--hcCC
Confidence            97 99999 99999987544432221 133456889998 788999999 589999999999999999999999  9999


Q ss_pred             hhhhhhhccccccCCeeecCCCCC
Q 013780          412 FVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |+.|.+.|.   .++||+|||+|+
T Consensus       400 p~~t~~~f~---~~~~yrTGDl~~  420 (617)
T 3rg2_A          400 PQHNASAFD---ANGFYCSGDLIS  420 (617)
T ss_dssp             HHHHHHHBC---TTSCEEEEEEEE
T ss_pred             hhhhhhccC---CCCceecCceEE
Confidence            999999983   578999999874

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=9.9e-58  Score=464.73  Aligned_cols=407  Identities=20%  Similarity=0.247  Sum_probs=322.0

Q ss_pred             CcCCCCCCCchHHHHhhhcccCCCceEEEeCC----CCccccHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCCcHH
Q 013780           19 LVLPSDPSFSMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFP   93 (436)
Q Consensus        19 ~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~gv~~gd~V~l~~~n~~~~~   93 (436)
                      .|+++..-.++.++|.++++++|+++|+++..    .++++||+||.+++.++|+.|+ ++|+++||+|+|+++|+++++
T Consensus        74 ~wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v  153 (663)
T 1ry2_A           74 AWFLNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI  153 (663)
T ss_dssp             CBSTTCEECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH
T ss_pred             CcCCCCCccHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH
Confidence            45655332356678889999999999999732    3478999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHH---------HHhhc----C-CCcEEeccCCccccc
Q 013780           94 ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDL----N-LPAVLLGSKDKVSSS  159 (436)
Q Consensus        94 ~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~----~-~~~~~~~~~~~~~~~  159 (436)
                      +++|||+++|++++|+++.++.+++.+++++++++++|+++....         .+...    . .+.+++.........
T Consensus       154 ~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~  233 (663)
T 1ry2_A          154 ITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV  233 (663)
T ss_dssp             HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC
T ss_pred             HHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcc
Confidence            999999999999999999999999999999999999999875421         12111    1 122222211100000


Q ss_pred             cccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhH-HhhhhccCCCCcEE
Q 013780          160 GLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI-SAHQELVGELDHVV  238 (436)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~~~  238 (436)
                      .  ........+.++.....  .........++++++|+|||||||.||||+++|++++.+.... .....+  ...|++
T Consensus       234 ~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~  307 (663)
T 1ry2_A          234 A--FHAPRDLDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT--HQEDVF  307 (663)
T ss_dssp             C--CCSSSEEEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC--CSSCEE
T ss_pred             c--cCCCccccHHHHHhhcC--CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCC--CCCcEE
Confidence            0  00112234666655432  2223344568899999999999999999999999987665322 222333  233999


Q ss_pred             EechhHHHHHHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCccCCCcce
Q 013780          239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLK  312 (436)
Q Consensus       239 ~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~lr  312 (436)
                      ++..|++|++++.+.++.+|..|+++++.+.    +++..+++.|+++++|+++++|++++.|.+...  ....++++||
T Consensus       308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr  387 (663)
T 1ry2_A          308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLR  387 (663)
T ss_dssp             EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCC
T ss_pred             EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceE
Confidence            9999999999987678899999999999853    589999999999999999999999999988764  3455789999


Q ss_pred             EEEecCCCCcHHHHHHHHhhCC--CCeeeeccccccccCCcccccCC-CCCccCcCccccccCCcEEEEEeCCCCccCCC
Q 013780          313 LVGSGAAPLGKELMEDCQKNIP--GATIFQVGYGMTETCAPISLENP-LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP  389 (436)
Q Consensus       313 ~i~~gg~~l~~~~~~~~~~~~~--~~~i~~~~YG~tE~~~~~~~~~~-~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~  389 (436)
                      .+++||+++++++.+++.+.++  ++++++ .||+||+++.++...+ .....+++++|+|++|++++|+|+++|++++.
T Consensus       388 ~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~-~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~  466 (663)
T 1ry2_A          388 CLGSVGEPIAAEVWEWYSEKIGKNEIPIVD-TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNT  466 (663)
T ss_dssp             EEEECSSCCCHHHHHHHHHTTSCSSSCEEE-CBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEEC
T ss_pred             EEEEEcCCCCHHHHHHHHHHhCCCCceEEE-eECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCC
Confidence            9999999999999999999886  488999 9999999877665543 22256789999999999999999658999998


Q ss_pred             -CCceEEEEec--CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          390 -NQLGEIWVRG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       390 -g~~Gel~v~g--~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                       |+.|||+++|  |+++.|  ||++|+.+.+.+. -..+|||+|||+|+
T Consensus       467 ~g~~Gel~i~g~~p~~~~g--y~~~~~~~~~~~~-~~~~g~y~TGDlg~  512 (663)
T 1ry2_A          467 SHAEGVLAVKAAWPSFART--IWKNHDRYLDTYL-NPYPGYYFTGDGAA  512 (663)
T ss_dssp             SSCEEEEEESSCCTTSCCE--ETTCHHHHHHHHT-SSSTTSEEEEEEEE
T ss_pred             CCcceEEEEecCCCchhcc--cccChHHHHHhhh-cCCCCEEEcCCEEE
Confidence             9999999999  589999  9999999888651 11267999999873

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=7.7e-58  Score=461.71  Aligned_cols=371  Identities=16%  Similarity=0.149  Sum_probs=306.9

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      +.|+.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus        26 ~~tl~~~~~~~a~~~Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~  103 (620)
T 4dg8_A           26 HPTVVARFSEMAALHPHREAIRDR--FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH  103 (620)
T ss_dssp             SCCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence            478999999999999999999997  789999999999999999999999999999999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (436)
                      ++|++|.++.+++.+++++++++++++++.........  ...                     .+...   ........
T Consensus       104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~~---------------------~~~~~---~~~~~~~~  157 (620)
T 4dg8_A          104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL--PCV---------------------PVRHL---PAAPASVA  157 (620)
T ss_dssp             EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS--CEE---------------------EGGGC---CCCCCCSS
T ss_pred             EEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCC--cee---------------------eeccC---CcCCcccc
Confidence            99999999999999999999999999765432111100  000                     00000   00001122


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (436)
Q Consensus       186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~  265 (436)
                      .....++++++|+|||||||.||||+++|+++.+.+.. .....+  ..++++++.+|++|..++. .++.+|..|++++
T Consensus       158 ~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~--~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v  233 (620)
T 4dg8_A          158 RPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAF--APQMRFLVNSPLSFDAATL-EIWGALLNGGCCV  233 (620)
T ss_dssp             CCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTT--CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred             CCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCC--CCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence            23446889999999999999999999999999876544 222222  2339999999999999986 6899999999999


Q ss_pred             EcC--CCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          266 SMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       266 ~~~--~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      +.+  .+++..+++.++++++|+++++|+++..|.+..   ...+++||.+++||+++++++.+++.+.++++++++ .|
T Consensus       234 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n-~Y  309 (620)
T 4dg8_A          234 LNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN-GY  309 (620)
T ss_dssp             ECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE-EE
T ss_pred             eCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe-eE
Confidence            964  679999999999999999999999999998753   236789999999999999999999999887799999 99


Q ss_pred             cccccCCcccccCC--CCCccCcCccccccCCcEEEEEeCCCCcc-CCCCCceEEEEecCCcccCccccCChhhhhhhcc
Q 013780          344 GMTETCAPISLENP--LVGVRRSGSAGTLVAGVEAQIVSVDTLKP-LPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG  420 (436)
Q Consensus       344 G~tE~~~~~~~~~~--~~~~~~~~~~G~p~~~~~v~i~d~~~~~~-~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~  420 (436)
                      |+||++.+++....  ........++|+|+++++++|+|+ ++.+ ++.|++|||+|+|+.++.|  ||++|+.|.+.|.
T Consensus       310 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~~~~g~~GEl~i~G~~v~~G--Y~~~p~~t~~~f~  386 (620)
T 4dg8_A          310 GPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDE-HGQEIAEPDRAGEIVAFGAGLAQG--YRNDAARTRASFV  386 (620)
T ss_dssp             CCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECT-TSCBCCSSSCCEEEEEEETTCCSE--ETTCHHHHHHHEE
T ss_pred             chhhhhhheEEEeccccccCCCCCCceecccCcEEEEECc-cCCCCCCCCCceEEEEeccccccc--cCCChhhhhhhhc
Confidence            99999877654322  211345678999999999999996 5555 8899999999999999999  9999999999982


Q ss_pred             c--cccC--CeeecCCCCC
Q 013780          421 C--EHTD--SFIRGKDQQT  435 (436)
Q Consensus       421 ~--~~~~--~~~~tgD~~~  435 (436)
                      .  +..+  +||+|||+|+
T Consensus       387 ~~p~~~~~~~~yrTGDl~~  405 (620)
T 4dg8_A          387 ELPYRGRLLRAYRTGDRAR  405 (620)
T ss_dssp             EEEETTEEEEEEEEEEEEE
T ss_pred             cCCCCCCCceEEeCCCEEE
Confidence            1  1111  7999999874

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=4.1e-58  Score=464.13  Aligned_cols=388  Identities=22%  Similarity=0.295  Sum_probs=315.5

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCC--CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G  103 (436)
                      .+|+.++|.++++++|+++|+++.+  .++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|
T Consensus        10 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   89 (590)
T 3kxw_A           10 CQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAG   89 (590)
T ss_dssp             CSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhC
Confidence            3899999999999999999998653  24899999999999999999999999999999999999999999999999999


Q ss_pred             CeEeecCCCCC---HHHHHHHHHhcCCcEEEEccchHHHHhhcCCCc-EEeccCCccccccccccCcccchhhHHhhhcC
Q 013780          104 AIASTANPVYT---VSELSKQVKDSNPKLVITVPELWDKVKDLNLPA-VLLGSKDKVSSSGLISRSSKIVSFHDLIELSG  179 (436)
Q Consensus       104 ~~~v~l~~~~~---~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (436)
                      ++++|++|.++   .+++.++++.+++++++++.+....+....... ....             ...+...+.+.....
T Consensus        90 ~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~  156 (590)
T 3kxw_A           90 CIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFL-------------KIPAIALESIELNRS  156 (590)
T ss_dssp             CEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEET-------------TEEEEEGGGCCGGGG
T ss_pred             cEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccc-------------ccceeechhcccccc
Confidence            99999999884   578999999999999999988776654432000 0000             000001111111111


Q ss_pred             CCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhcc
Q 013780          180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ  259 (436)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~  259 (436)
                        .........++++++|+|||||||.||+|++||+++..++......+.+...  +++++.+|++|.+|+...++.++.
T Consensus       157 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~h~~g~~~~~~~~l~  232 (590)
T 3kxw_A          157 --SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDE--TIIFSWLPPHHDMGLIGCILTPIY  232 (590)
T ss_dssp             --GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHHTTTHHHHH
T ss_pred             --ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCc--CeEEEecCCCcchhhHHHHHHHHh
Confidence              2223345678899999999999999999999999999998877666655443  999999999999999755899999


Q ss_pred             CCcEEEEcCCC----CHHHHHHHHHHhcceEEEecHHHHHHHHhc---cccCccCCCcceEEEecCCCCcHHHHHHHHhh
Q 013780          260 KGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN---SLVRKFDISSLKLVGSGAAPLGKELMEDCQKN  332 (436)
Q Consensus       260 ~G~~v~~~~~~----~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~---~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~  332 (436)
                      .|+++++.+++    ++..+++.++++++|++.++|.++..+.+.   ......++++||.+++||+++++++.++|++.
T Consensus       233 ~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~  312 (590)
T 3kxw_A          233 GGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQA  312 (590)
T ss_dssp             HTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred             cCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHH
Confidence            99999999765    899999999999999999999999988775   33345678999999999999999999999998


Q ss_pred             CC-----CCeeeeccccccccCCcccccCCC-------------------------CCccCcCccccccCCcEEEEEeCC
Q 013780          333 IP-----GATIFQVGYGMTETCAPISLENPL-------------------------VGVRRSGSAGTLVAGVEAQIVSVD  382 (436)
Q Consensus       333 ~~-----~~~i~~~~YG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~p~~~~~v~i~d~~  382 (436)
                      |+     +.++++ .||+||++++++.....                         ....+..++|+|+++  ++|+|++
T Consensus       313 ~~~~g~~~~~~~~-~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~  389 (590)
T 3kxw_A          313 FKEFGFRKEAFYP-CYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPD  389 (590)
T ss_dssp             HGGGTCCGGGEEE-EEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTT
T ss_pred             HHHcCCCcccccc-ccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCC
Confidence            74     357999 99999999877654321                         112345789999998  8899987


Q ss_pred             CCccCCCCCceEEEEecCCcccCccccCChhhhhhhccc--ccc-CC--eeecCCCCC
Q 013780          383 TLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC--EHT-DS--FIRGKDQQT  435 (436)
Q Consensus       383 ~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~--~~~-~~--~~~tgD~~~  435 (436)
                      ++.++++|++|||+|+|++++.|  ||++|+.|.+.|..  ++. +|  ||+|||+|+
T Consensus       390 ~~~~~~~g~~GEl~v~g~~v~~G--Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~  445 (590)
T 3kxw_A          390 TLIPCDFDQVGEIWVQSNSVAKG--YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGF  445 (590)
T ss_dssp             TCCBCCTTBCEEEEEESTTSCCC--BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEE
T ss_pred             CCcCCCCCCEEEEEEeCCccccc--ccCChhHHHHHHhccccCCCCCCcEEecCcEEE
Confidence            79999999999999999999999  99999999999821  111 13  999999874

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.2e-56  Score=450.53  Aligned_cols=381  Identities=17%  Similarity=0.158  Sum_probs=306.2

Q ss_pred             CCCchHHHHhhhcccCCCceEEEeCCC--------CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHH
Q 013780           25 PSFSMVHFLFRNSASYSSKLALIDADS--------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF   96 (436)
Q Consensus        25 ~~~ti~~~l~~~~~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~   96 (436)
                      +++|+.++|.++++++|+++|+++.+.        ++++||+||.++++++|+.|.+.|+ +||+|+|+++|++++++++
T Consensus        18 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~   96 (562)
T 3ite_A           18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII   96 (562)
T ss_dssp             CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHH
Confidence            349999999999999999999987531        2789999999999999999999999 7999999999999999999


Q ss_pred             HHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhh
Q 013780           97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus        97 lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      |||+++|++++|++|.++.+++.+++++++++++|+++.....+.... ...++...              ...+.+...
T Consensus        97 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~  161 (562)
T 3ite_A           97 VGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPP-ETKVLDTK--------------NQSFIENLS  161 (562)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCT-TCEEEETT--------------CHHHHHHHH
T ss_pred             HHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCc-cceeeccc--------------chhhhhhcc
Confidence            999999999999999999999999999999999999876543321111 11111111              112333333


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhh------ccCCCCcEEEechhHHHHHHH
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE------LVGELDHVVLCVLPMFHVFGL  250 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~~~g~  250 (436)
                      ...  .........++++++|+|||||||.||+|+++|+++...+........      ..-...+++++..|+.|..++
T Consensus       162 ~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (562)
T 3ite_A          162 TQD--TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI  239 (562)
T ss_dssp             HSC--CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH
T ss_pred             ccc--ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhH
Confidence            332  222334456788999999999999999999999999888766544332      111223889999999888877


Q ss_pred             HHHHHhhccCCcEEEEcCCCC-HHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHH
Q 013780          251 SVILYDQLQKGNCVVSMGKFD-IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDC  329 (436)
Q Consensus       251 ~~~~~~~l~~G~~v~~~~~~~-~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~  329 (436)
                      . .++.++..|+++++.+.+. +..+++.++++++|++.++|+++..+....    .++++||.+++||+++++++.++|
T Consensus       240 ~-~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~----~~~~~lr~~~~gG~~l~~~~~~~~  314 (562)
T 3ite_A          240 G-EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP----EDAPHLVYLGVGGEKMTPRTQQIW  314 (562)
T ss_dssp             H-HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG----GGSTTCCEEEEESSCCCHHHHHHH
T ss_pred             H-HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc----cccCceEEEEEecCCCCHHHHHHH
Confidence            5 6788999999999986543 577889999999999999999988775433    367899999999999999999999


Q ss_pred             HhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCcccc
Q 013780          330 QKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYI  409 (436)
Q Consensus       330 ~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~  409 (436)
                      ++.++ +++++ .||+||++..++...... .....++|+|+++++++|+|++++.++++|+.|||+|+|++++.|  ||
T Consensus       315 ~~~~~-~~~~~-~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~G--Y~  389 (562)
T 3ite_A          315 SSSDR-VALVN-VYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANG--YL  389 (562)
T ss_dssp             TTCSS-CEEEE-EECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCE--ES
T ss_pred             hhCCC-cEEEE-eeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchh--hC
Confidence            99876 99999 999999987666543332 456788999999999999998889999999999999999999999  99


Q ss_pred             CChhhhhhhccccccCCeeecCCCCC
Q 013780          410 NFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ++|+.+...+  .+.++||+|||+|+
T Consensus       390 ~~p~~t~~~~--~~g~~w~~TGDlg~  413 (562)
T 3ite_A          390 NRPDAKGFCD--INGRKMYRTGDIVR  413 (562)
T ss_dssp             SCTTCCSEEE--ETTEEEEEEEEEEE
T ss_pred             CCcccccccc--CCCCEEEecCCEEE
Confidence            9999887654  22335999999874

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=5.4e-57  Score=446.88  Aligned_cols=381  Identities=22%  Similarity=0.300  Sum_probs=299.6

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      |||.++|.++++++|+++|+++.  ++++||+||.++++++|+.|++.   +||+|+|+++|++++++++|||+++|+++
T Consensus         1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~   75 (501)
T 3ipl_A            1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI   75 (501)
T ss_dssp             --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence            57899999999999999999987  78999999999999999999986   89999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC--CCcEEeccCCccccccccccCccc-chhhHHhhhcCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSSKI-VSFHDLIELSGSVTD  183 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  183 (436)
                      +|+++.++.+++.++++.++++++|++...........  ........................ ...+....... ...
T Consensus        76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  154 (501)
T 3ipl_A           76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKES-PSN  154 (501)
T ss_dssp             EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CC-HHH
T ss_pred             EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCC-ccc
Confidence            99999999999999999999999999876543221110  000000000000000000000000 00000000000 001


Q ss_pred             CCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcE
Q 013780          184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC  263 (436)
Q Consensus       184 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  263 (436)
                      .......++++++|+|||||||.||+|+++|+++...+........+...  +++++.+|++|.+|+. .++.++..|++
T Consensus       155 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~-~~~~~l~~G~~  231 (501)
T 3ipl_A          155 ILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRD--TNWLSVLPIYHISGLS-VLLRAVIEGFT  231 (501)
T ss_dssp             HTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTT--CEEEECSCTTSHHHHH-HHHHHHHHTCE
T ss_pred             ccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCcc--CEEEEeCcHHHHHHHH-HHHHHHHcCce
Confidence            12234568899999999999999999999999999988776666555333  9999999999999996 58899999999


Q ss_pred             EEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       264 v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      +++.+++++..+++.++++++|+++++|+++..|.+......   .+||.+++||+++++++.+++++.  ++++++ .|
T Consensus       232 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~-~Y  305 (501)
T 3ipl_A          232 VRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYN-SF  305 (501)
T ss_dssp             EEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEE-EE
T ss_pred             EEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEec-cc
Confidence            999999999999999999999999999999999988765433   289999999999999999999984  599999 99


Q ss_pred             cccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhccccc
Q 013780          344 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEH  423 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~~  423 (436)
                      |+||+++.++.........+.+++|+|+++++++|+|++      +|+.|||+++|+.++.|  ||++|+.+.. |    
T Consensus       306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~g--Y~~~~~~t~~-~----  372 (501)
T 3ipl_A          306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNG--YLYPTDLTGT-F----  372 (501)
T ss_dssp             EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSC--CSBSTTCCCS-E----
T ss_pred             cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhh--hCcChhhcch-h----
Confidence            999998765554433224577899999999999999963      46789999999999999  9999999887 5    


Q ss_pred             cCCeeecCCCCC
Q 013780          424 TDSFIRGKDQQT  435 (436)
Q Consensus       424 ~~~~~~tgD~~~  435 (436)
                      .++||+|||+|+
T Consensus       373 ~~g~~~TGDl~~  384 (501)
T 3ipl_A          373 ENGYFNTGDIAE  384 (501)
T ss_dssp             ETTEEEEEEEEE
T ss_pred             cCCceecCCEEE
Confidence            578999999874

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=6.6e-57  Score=445.76  Aligned_cols=363  Identities=25%  Similarity=0.340  Sum_probs=299.0

Q ss_pred             CchHHHHhhhcccCCC-ceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCe
Q 013780           27 FSMVHFLFRNSASYSS-KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI  105 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~  105 (436)
                      +|+.+.|.++++++|+ ++|+++.  ++++||+||.++++++|+.|.     .|++|+|+++|++++++++|||+++|++
T Consensus        22 ~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~   94 (505)
T 3nyq_A           22 SSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA   94 (505)
T ss_dssp             --CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred             chhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence            6799999999999997 9999997  799999999999999999874     4889999999999999999999999999


Q ss_pred             EeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCC
Q 013780          106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP  185 (436)
Q Consensus       106 ~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (436)
                      ++|++|.++.+++.+++++++++++|++.....  .........+..+                   .   ...  ....
T Consensus        95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~-------------------~---~~~--~~~~  148 (505)
T 3nyq_A           95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL--PPALGALERVDVD-------------------V---RAR--GAVP  148 (505)
T ss_dssp             EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC--CGGGTTSEEEECC-------------------T---TCC--CCCC
T ss_pred             EEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc--chhhccccccccc-------------------c---ccc--cCCC
Confidence            999999999999999999999999999864210  0000000000000                   0   000  1122


Q ss_pred             CCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780          186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (436)
Q Consensus       186 ~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~  265 (436)
                      .....++++++|+|||||||.||+|+++|+++...+......+.+...  +++++.+|++|..|+...++.++..|++++
T Consensus       149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~  226 (505)
T 3nyq_A          149 EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGE--DVLVQGLPLFHVHGLVLGILGPLRRGGSVR  226 (505)
T ss_dssp             CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTT--CEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred             CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCC--cEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence            334567899999999999999999999999999998877776666444  999999999999998767899999999999


Q ss_pred             EcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc---CccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeecc
Q 013780          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV---RKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVG  342 (436)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~---~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~  342 (436)
                      +.+.+++..+++.+ ++++|+++++|+++..|.+....   ....++++|.+++||+++++++.+++++.++ .++++ .
T Consensus       227 ~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~~~-~  303 (505)
T 3nyq_A          227 HLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATG-RRVIE-R  303 (505)
T ss_dssp             ECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHS-CCCEE-E
T ss_pred             ECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcC-Ceeec-c
Confidence            99999999999999 88999999999999999874332   2235788999999999999999999999986 99999 9


Q ss_pred             ccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCC---CCceEEEEecCCcccCccccCChhhhhhhc
Q 013780          343 YGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP---NQLGEIWVRGPNVTPGIVYINFFVFTLFLW  419 (436)
Q Consensus       343 YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~---g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~  419 (436)
                      ||+||++..++.....  ....+++|+|+++++++|+|+ ++++++.   |++|||+|+|++++.|  ||++|+.|.+.|
T Consensus       304 YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f  378 (505)
T 3nyq_A          304 YGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTE--YLNRPDATAAAF  378 (505)
T ss_dssp             EEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCE--ETTCHHHHHHTB
T ss_pred             cchhhcccccccCCCC--CCCCCCcccCCCCCEEEEECC-CCCCcccCCCCceEEEEEecCchhhh--hCCChhHhhhhh
Confidence            9999998766654433  567789999999999999995 7888876   8999999999999999  999999999988


Q ss_pred             cccccCCeeecCCCCC
Q 013780          420 GCEHTDSFIRGKDQQT  435 (436)
Q Consensus       420 ~~~~~~~~~~tgD~~~  435 (436)
                      .   .++||+|||+|+
T Consensus       379 ~---~~g~y~TGDl~~  391 (505)
T 3nyq_A          379 T---EDGFFRTGDMAV  391 (505)
T ss_dssp             C---TTSCEEEEEEEE
T ss_pred             c---CCCCCccCCeEE
Confidence            3   578999999874

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=2.6e-54  Score=470.10  Aligned_cols=376  Identities=19%  Similarity=0.223  Sum_probs=310.7

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .++.++|.++++++|+++|+++.  ++.+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++|||+++|+++
T Consensus       464 ~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~  541 (1304)
T 2vsq_A          464 KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY  541 (1304)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence            68999999999999999999987  7899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchhhHHhhhcCCCCCCCC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD  186 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (436)
                      ||++|.++.+++.++++++++++++++......+.........+..+..             ..+    . ..  .....
T Consensus       542 vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~----~-~~--~~~~~  601 (1304)
T 2vsq_A          542 LPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ-------------TRF----E-EQ--ASDPA  601 (1304)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG-------------GGG----G-SC--SSCCC
T ss_pred             EEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc-------------ccc----c-cc--cCCCC
Confidence            9999999999999999999999999997765443322211111111100             000    0 01  11223


Q ss_pred             CCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEE
Q 013780          187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS  266 (436)
Q Consensus       187 ~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~  266 (436)
                      ....++++|+|+|||||||.||||+++|+++.+.. .......+  ...++++...|++|..+.+ .++.+|..|+++++
T Consensus       602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~~~--~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~  677 (1304)
T 2vsq_A          602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYMAF--SDQDTFLSVSNYAFDAFTF-DFYASMLNAARLII  677 (1304)
T ss_dssp             CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSSCC--CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEE
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhcCC--CCCCEEEEECCccHHHHHH-HHHHHHHcCCEEEE
Confidence            34568899999999999999999999999998652 21122222  2338999999998887774 78999999999999


Q ss_pred             cCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       267 ~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      .+.   +++..+++.+.++++|++.++|+++..|.+...   ..+++||.+++||+++++++.++|.+.+++.++++ .|
T Consensus       678 ~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n-~Y  753 (1304)
T 2vsq_A          678 ADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DWMKGLRCILFGGERASVPHVRKALRIMGPGKLIN-CY  753 (1304)
T ss_dssp             CCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEE-EE
T ss_pred             CChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEE-eE
Confidence            964   689999999999999999999999999976532   24678999999999999999999999988789999 99


Q ss_pred             cccccCCcccccCCCC--CccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcc-
Q 013780          344 GMTETCAPISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG-  420 (436)
Q Consensus       344 G~tE~~~~~~~~~~~~--~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~-  420 (436)
                      |+||++..++......  ......++|+|+++++++|+| ++++++|.|++|||+|+|+.++.|  |+++|+.|.++|. 
T Consensus       754 G~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~G--Y~~~p~~T~~~f~~  830 (1304)
T 2vsq_A          754 GPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKG--YVNRADLTKEKFIE  830 (1304)
T ss_dssp             CCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCC--BTTCHHHHHHHEEE
T ss_pred             ChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCcc--ccCCcccchhhhcc
Confidence            9999987766543221  134567899999999999999 489999999999999999999999  9999999999982 


Q ss_pred             --ccccCCeeecCCCCC
Q 013780          421 --CEHTDSFIRGKDQQT  435 (436)
Q Consensus       421 --~~~~~~~~~tgD~~~  435 (436)
                        +...++||+|||+|+
T Consensus       831 ~p~~~g~~~yrTGDl~~  847 (1304)
T 2vsq_A          831 NPFKPGETLYRTGDLAR  847 (1304)
T ss_dssp             CTTSTTCEEEEEEEEEE
T ss_pred             CCCCCCCeeEecCCeEE
Confidence              223457999999874

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=1e-32  Score=268.02  Aligned_cols=223  Identities=18%  Similarity=0.222  Sum_probs=182.1

Q ss_pred             CCCC-CCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC-CCCcEEEechhHHHHHHHHHHHHhhccCCcEEE
Q 013780          188 SVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV  265 (436)
Q Consensus       188 ~~~~-~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~  265 (436)
                      ...+ +++++|+|||||||.||+|+++|+++...+..........+ ..++++++..|+.|..+....++.++..|++++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            3455 88999999999999999999999999887665544332222 233999999998777776667888999999999


Q ss_pred             EcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccC--CCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      +.+.+++..+++.|+++++|+++++|+++..|++.......+  +++||.+++||+++++++.+++++.|+ +++++ .|
T Consensus       161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~-~Y  238 (436)
T 3qov_A          161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYN-SF  238 (436)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEE-EE
T ss_pred             eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEe-cC
Confidence            998889999999999999999999999999998876554443  789999999999999999999999996 99999 99


Q ss_pred             cccccCCc-ccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780          344 GMTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  422 (436)
Q Consensus       344 G~tE~~~~-~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~  422 (436)
                      |+||+++. +.....     ....+|.|.++++++|+|+++++++++|+.|||+++|....              .+   
T Consensus       239 G~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~--------------~~---  296 (436)
T 3qov_A          239 GMTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDRE--------------MM---  296 (436)
T ss_dssp             EEGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCC--------------SS---
T ss_pred             cchhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcC--------------Cc---
Confidence            99999654 333321     12236778889999999988999999999999999985311              11   


Q ss_pred             ccCCeeecCCCCC
Q 013780          423 HTDSFIRGKDQQT  435 (436)
Q Consensus       423 ~~~~~~~tgD~~~  435 (436)
                       .++||+|||+|+
T Consensus       297 -~~~~y~TGDl~~  308 (436)
T 3qov_A          297 -PLIRYRTRDLTR  308 (436)
T ss_dssp             -CCCSEEEEEEEC
T ss_pred             -eEEEEEcCCEEE
Confidence             356888888764

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.97  E-value=2.5e-31  Score=258.29  Aligned_cols=223  Identities=21%  Similarity=0.232  Sum_probs=177.1

Q ss_pred             CCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC-CCCcEEEechhH-HHHHHHHHHHHhhccCCcEEE
Q 013780          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV  265 (436)
Q Consensus       188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~v~  265 (436)
                      ...++++++++|||||||.||+|+++|+++...+..........+ ..+|++++.+|+ +|..++. ..+.++..|++++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~  164 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTVI  164 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEEE
Confidence            446788999999999999999999999999877654433222222 233899999998 5666664 6788899999999


Q ss_pred             EcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccC--CCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      +.+.+++..+++.|+++++|+++++|+++..|++.......+  +++||.+++||+++++++.+++++.|+ +++++ .|
T Consensus       165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~-~Y  242 (437)
T 2y27_A          165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVD-IY  242 (437)
T ss_dssp             CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEE-EE
T ss_pred             eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEe-cC
Confidence            888889999999999999999999999999998865433333  579999999999999999999999886 99999 99


Q ss_pred             cccccCCc-ccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780          344 GMTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  422 (436)
Q Consensus       344 G~tE~~~~-~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~  422 (436)
                      |+||+++. +......    ....++.|.++++++|+|+++|+++++|+.|||+++|..              .+.+   
T Consensus       243 G~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t--------------~~~~---  301 (437)
T 2y27_A          243 GLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT--------------KEAL---  301 (437)
T ss_dssp             EETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS--------------CSSS---
T ss_pred             CchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC--------------cCCc---
Confidence            99998543 3333221    111256677899999999878999999999999999842              1112   


Q ss_pred             ccCCeeecCCCCC
Q 013780          423 HTDSFIRGKDQQT  435 (436)
Q Consensus       423 ~~~~~~~tgD~~~  435 (436)
                       .++||+|||+|+
T Consensus       302 -~~~~y~TGDl~~  313 (437)
T 2y27_A          302 -PIIRYRTRDLTR  313 (437)
T ss_dssp             -CCCSEEEEEEEC
T ss_pred             -hhheeecCCEEE
Confidence             356888888764

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.97  E-value=5.9e-32  Score=256.75  Aligned_cols=227  Identities=15%  Similarity=0.088  Sum_probs=179.2

Q ss_pred             CCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC-CCCcEEEechhH-HHHHHHHHHHHhhccCCcEEE
Q 013780          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV  265 (436)
Q Consensus       188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~v~  265 (436)
                      ...++++++|+|||||||.||+|+++|+++...+..........+ ..++++++.+|+ +|..++. ..+.++..|+ ++
T Consensus        87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v  164 (369)
T 3hgu_A           87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MF  164 (369)
T ss_dssp             TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CE
T ss_pred             cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EE
Confidence            457788999999999999999999999999888764433322222 233899999999 9999886 5555688888 66


Q ss_pred             EcCCCCHH-----------------------HHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCc
Q 013780          266 SMGKFDIE-----------------------MALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG  322 (436)
Q Consensus       266 ~~~~~~~~-----------------------~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~  322 (436)
                      +...++|.                       .+++.++++++|++.++|+++..|++.......++++||.+++||++++
T Consensus       165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~  244 (369)
T 3hgu_A          165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN  244 (369)
T ss_dssp             ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred             ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence            67677887                       8888999999999999999999999886544456789999999999999


Q ss_pred             HHHHHHHH-hhCCCCeeeeccccccccCCcccccCCCCCccCcC-ccccc------cCCcEEEEEeCCCCccCCCCCceE
Q 013780          323 KELMEDCQ-KNIPGATIFQVGYGMTETCAPISLENPLVGVRRSG-SAGTL------VAGVEAQIVSVDTLKPLPPNQLGE  394 (436)
Q Consensus       323 ~~~~~~~~-~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~-~~G~p------~~~~~v~i~d~~~~~~~~~g~~Ge  394 (436)
                      +++.++++ +.||++++++ .||+||+++++...        +. ++|+|      +++++++|+|+++++++++|+.||
T Consensus       245 ~~~~~~~~~~~~p~~~v~~-~YG~TE~~~~~~~~--------~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GE  315 (369)
T 3hgu_A          245 LDEIKFIASEILPDCEFSA-SYGSTSALGVSRSL--------LITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGN  315 (369)
T ss_dssp             HHHHHHHHHHTCTTSEEEE-EEEEGGGTEEEEEC--------CBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEE
T ss_pred             HHHHHHHHHHhCCCcEEEc-ccCchhhhcceecc--------ccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceE
Confidence            99999999 9997799999 99999988655321        22 58998      999999999987999999999999


Q ss_pred             EEEecC---CcccCccccCChhhhhhhccccccCCeeecC
Q 013780          395 IWVRGP---NVTPGIVYINFFVFTLFLWGCEHTDSFIRGK  431 (436)
Q Consensus       395 l~v~g~---~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tg  431 (436)
                      |+|++.   ..+.+  |+..+..+....    .++|+.+|
T Consensus       316 l~vt~l~~~~~l~r--y~tgD~~~~~~~----~~g~~~d~  349 (369)
T 3hgu_A          316 VIVTHLSPWAFYPR--VAERDTAIRLPG----VSGFAGDR  349 (369)
T ss_dssp             EEEEEEETTEEEEE--EEEEEEEEEECC----STTCSSCE
T ss_pred             EEEEEcCccccccc--ccCCceEEEecC----CCCCcCcc
Confidence            999983   23566  776555544433    34554443

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.97  E-value=3.2e-32  Score=256.70  Aligned_cols=193  Identities=19%  Similarity=0.227  Sum_probs=162.2

Q ss_pred             CCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccCCcEEEEcCCC
Q 013780          191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF  270 (436)
Q Consensus       191 ~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~  270 (436)
                      .+++++|+|||||||.||+|++||+++.+++......+.+...  |++++.+|++|.+|+. .++.++..|+++++.++.
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~--d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~  112 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPG--TRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPT  112 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCC--CEEEEECChHHHHHHH-HHHHHHHhCcEEEecCcc
Confidence            4689999999999999999999999999988877776665444  9999999999999996 678888899998887532


Q ss_pred             CHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccccccccCC
Q 013780          271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCA  350 (436)
Q Consensus       271 ~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~  350 (436)
                        ...++.++++++|++.++|+++..|++..... .++++||.+++||+++++++.+++++.  ++++++ .||+||+++
T Consensus       113 --~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~-~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~-~YG~TEt~~  186 (358)
T 4gs5_A          113 --ANPLAGLDHADFDFVAMVPMQLQSILENSATS-GQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQ-SYGMTETVS  186 (358)
T ss_dssp             --SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTG-GGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEE-EEECGGGSS
T ss_pred             --ccHHHHHHHhCCeEEEcChHHHHHhhcccccc-ccCCcceEEEEcccCCCchheeccccc--CceEEe-ccccccccc
Confidence              23467789999999999999999999876543 478999999999999999999999875  599999 999999988


Q ss_pred             cccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccC
Q 013780          351 PISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG  405 (436)
Q Consensus       351 ~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g  405 (436)
                      .++.....  ....+++|.+.|++++.+.+           .|||+++|+....|
T Consensus       187 ~~~~~~~~--~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~~~g  228 (358)
T 4gs5_A          187 HVALKALN--GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVTNGQ  228 (358)
T ss_dssp             EEEEEECS--STTCCSCEEECTTCEEEECT-----------TSEEEEESGGGTTC
T ss_pred             eeeccccc--ccccceeeccCCCeEEEecC-----------cCceEEecccccCc
Confidence            77766544  45678899999999988755           39999998754444

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.97  E-value=4.1e-31  Score=257.22  Aligned_cols=223  Identities=21%  Similarity=0.219  Sum_probs=176.1

Q ss_pred             CCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC-CCCcEEEechhH-HHHHHHHHHHHhhccCCcEEE
Q 013780          188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV  265 (436)
Q Consensus       188 ~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~-~~~~g~~~~~~~~l~~G~~v~  265 (436)
                      ...++++++++|||||||.||+|+++|+++...+..........+ ..++++++.+|+ .|..++. ..+.++..|++++
T Consensus        88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~~~~~G~~~~  166 (443)
T 2y4o_A           88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLG-IHYGAERLGCMVV  166 (443)
T ss_dssp             SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHHTCEEE
T ss_pred             CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHH-HHHHHHHcCCEEE
Confidence            346788999999999999999999999999876654443222222 233899999998 4555553 6788899999999


Q ss_pred             EcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccC--CCcceEEEecCCCCcHHHHHHHHhhCCCCeeeeccc
Q 013780          266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQVGY  343 (436)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i~~~~Y  343 (436)
                      +.+.+++..+++.|+++++|+++++|+++..|++.......+  +++||.+++||+++++++.+++++.|+ +++++ .|
T Consensus       167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~-~Y  244 (443)
T 2y4o_A          167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG-IDALD-IY  244 (443)
T ss_dssp             CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEE-EE
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEe-cc
Confidence            998889999999999999999999999999998865443333  589999999999999999999999986 99999 99


Q ss_pred             cccccCCc-ccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhhhhhcccc
Q 013780          344 GMTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE  422 (436)
Q Consensus       344 G~tE~~~~-~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~~~~~~~~  422 (436)
                      |+||+++. +......    ....++.|.++++++|+|+++|+++++|+.|||+++|.. .             +.+   
T Consensus       245 G~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t-~-------------~~~---  303 (443)
T 2y4o_A          245 GLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT-K-------------EAM---  303 (443)
T ss_dssp             EETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS-C-------------SSS---
T ss_pred             CchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC-c-------------ccC---
Confidence            99998543 3333221    111255677899999999878999999999999999842 1             112   


Q ss_pred             ccCCeeecCCCCC
Q 013780          423 HTDSFIRGKDQQT  435 (436)
Q Consensus       423 ~~~~~~~tgD~~~  435 (436)
                       .++||+|||+|+
T Consensus       304 -p~~~y~TGDl~~  315 (443)
T 2y4o_A          304 -PVIRYRTRDLTA  315 (443)
T ss_dssp             -CCSSEEEEEEEC
T ss_pred             -hhheeecCCEEE
Confidence             356888888764

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=96.98  E-value=0.0028  Score=62.11  Aligned_cols=86  Identities=13%  Similarity=0.058  Sum_probs=50.1

Q ss_pred             CCc---ceEEEecCCCCcHHHHHHHHhhCCCCeee-eccccccccCCcccccCCCCCccCcCccccc-cCC-cEEEEEeC
Q 013780          308 ISS---LKLVGSGAAPLGKELMEDCQKNIPGATIF-QVGYGMTETCAPISLENPLVGVRRSGSAGTL-VAG-VEAQIVSV  381 (436)
Q Consensus       308 l~~---lr~i~~gg~~l~~~~~~~~~~~~~~~~i~-~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p-~~~-~~v~i~d~  381 (436)
                      +++   +.++..||-   ..-...+++.+|+.+++ . .|++||. .+.....+.   ..+...+.. +|+ +-.+.++.
T Consensus       296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~-~Y~ASEg-~~gi~~~p~---~~~~~~~~~L~~~~~ffEFip~  367 (581)
T 4eql_A          296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVST-TYGSSET-TFGINLDPL---CKPEDVSYTFMPNMSYFEFIPM  367 (581)
T ss_dssp             STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECC-EEECSSC-EEEECSCTT---SCGGGCCEEECTTSSEEEEEEC
T ss_pred             CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccC-ccccccc-eeeeccCCC---CCcccCceeecCCcEEEEEEec
Confidence            566   555666773   44445555666678888 7 9999994 333322221   122233332 222 45567653


Q ss_pred             CCC--------ccCCCCCceEEEEecCC
Q 013780          382 DTL--------KPLPPNQLGEIWVRGPN  401 (436)
Q Consensus       382 ~~~--------~~~~~g~~Gel~v~g~~  401 (436)
                      +..        ..+..|+.+||.+++-.
T Consensus       368 ~~~~~~~~v~l~eVe~G~~YelViTt~~  395 (581)
T 4eql_A          368 DGGDKNDVVDLEDVKLGCTYEPVVTNFA  395 (581)
T ss_dssp             STTCCSSCEEGGGCCTTCEEEEEEECSS
T ss_pred             cccCCCcEeCHHHcCCCceEEEEEeecc
Confidence            221        34678999999998864

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=96.73  E-value=0.0044  Score=60.86  Aligned_cols=31  Identities=23%  Similarity=0.232  Sum_probs=26.8

Q ss_pred             CCCCCeEEEEcCCCCC-CCCcceehhhhHHHh
Q 013780          189 VKQTDAAALLYSSGTT-GVSKGVILTHKNFIA  219 (436)
Q Consensus       189 ~~~~~~a~i~~TSGtT-G~pK~v~~t~~~l~~  219 (436)
                      ..++.+..+..||||| |.||-+++|.+.+..
T Consensus        96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~  127 (609)
T 4b2g_A           96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR  127 (609)
T ss_dssp             SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence            3667788999999999 789999999998765

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=96.06  E-value=0.021  Score=55.81  Aligned_cols=32  Identities=25%  Similarity=0.229  Sum_probs=26.9

Q ss_pred             CCCCCCeEEEEcCCCCC-CCCcceehhhhHHHh
Q 013780          188 SVKQTDAAALLYSSGTT-GVSKGVILTHKNFIA  219 (436)
Q Consensus       188 ~~~~~~~a~i~~TSGtT-G~pK~v~~t~~~l~~  219 (436)
                      -..++.+.....||||| |.+|-+++|.+.+..
T Consensus        94 iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~  126 (581)
T 4epl_A           94 ILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN  126 (581)
T ss_dssp             SSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             ccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence            34667788899999999 779999999998765

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=94.24  E-value=0.33  Score=46.03  Aligned_cols=88  Identities=13%  Similarity=0.116  Sum_probs=71.6

Q ss_pred             ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEE
Q 013780           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (436)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v  130 (436)
                      ..+|.+.+...+..+++.+...|+.++|++...++.+.  ..+...++++..|+.+++++. .+.+.+...+++.++.++
T Consensus       108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l  186 (437)
T 2y27_A          108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII  186 (437)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred             EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence            56899999888888888887889999999999888642  334557888999999998765 478888999999999999


Q ss_pred             EEccchHHHHh
Q 013780          131 ITVPELWDKVK  141 (436)
Q Consensus       131 i~~~~~~~~~~  141 (436)
                      +..+..+..+.
T Consensus       187 ~~~Ps~~~~l~  197 (437)
T 2y27_A          187 MVTPSYMLSIA  197 (437)
T ss_dssp             EECHHHHHHHH
T ss_pred             EECHHHHHHHH
Confidence            99887766543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=93.77  E-value=0.33  Score=45.99  Aligned_cols=88  Identities=16%  Similarity=0.075  Sum_probs=72.4

Q ss_pred             ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCC--CcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEE
Q 013780           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (436)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v  130 (436)
                      ..+|.+.+...+..+++.+...|+.++|++....+-+  ...+..+++++..|+..++.++. ..+.+...+++.++.++
T Consensus       104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~  182 (436)
T 3qov_A          104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL  182 (436)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred             EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence            5689999999888888888888999999999988753  33445678889999999987654 67888899999999999


Q ss_pred             EEccchHHHHh
Q 013780          131 ITVPELWDKVK  141 (436)
Q Consensus       131 i~~~~~~~~~~  141 (436)
                      +..+..+..+.
T Consensus       183 ~~~P~~~~~l~  193 (436)
T 3qov_A          183 HAIPSYAIRLA  193 (436)
T ss_dssp             ECCHHHHHHHH
T ss_pred             EECHHHHHHHH
Confidence            99887766553

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=93.43  E-value=0.53  Score=44.68  Aligned_cols=87  Identities=11%  Similarity=0.111  Sum_probs=71.4

Q ss_pred             ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCC--cHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEE
Q 013780           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV  130 (436)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~v  130 (436)
                      ..+|.+.+...+..+++.+...|+.++|++...++-+.  ..+...++++..|+..++++.. +.+.+...+++.++.++
T Consensus       110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l  188 (443)
T 2y4o_A          110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII  188 (443)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred             EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence            56899999888888888887889999999999888643  3345678888999999887654 78888899999999999


Q ss_pred             EEccchHHHH
Q 013780          131 ITVPELWDKV  140 (436)
Q Consensus       131 i~~~~~~~~~  140 (436)
                      +..+..+..+
T Consensus       189 ~~~Ps~~~~l  198 (443)
T 2y4o_A          189 LVTPSYMLNL  198 (443)
T ss_dssp             EECHHHHHHH
T ss_pred             EECHHHHHHH
Confidence            9988776554

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=88.29  E-value=4.8  Score=38.66  Aligned_cols=101  Identities=15%  Similarity=0.125  Sum_probs=76.2

Q ss_pred             cCCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCc-HHHHHHHHHHhCCeEeecC
Q 013780           39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGAIASTAN  110 (436)
Q Consensus        39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~-~~~~~lA~~~~G~~~v~l~  110 (436)
                      ..++.+|++..-+|       ..+|.+.+...+..+...   .++.++|++...+|-... .+..+++++..|+..++.+
T Consensus       160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~  236 (501)
T 3ipl_A          160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD  236 (501)
T ss_dssp             CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence            35677777644323       578999888777666554   488999999998886533 2344677888999988875


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEccchHHHHhhc
Q 013780          111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDL  143 (436)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~  143 (436)
                       ..+.+.+...+++.++.+++..+..+..+...
T Consensus       237 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~  268 (501)
T 3ipl_A          237 -KFNAEQILTMIKNERITHISLVPQTLNWLMQQ  268 (501)
T ss_dssp             -SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence             46888999999999999999998877766543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=87.63  E-value=1.8  Score=39.82  Aligned_cols=88  Identities=9%  Similarity=0.098  Sum_probs=65.2

Q ss_pred             ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCc--HHHHHHHHHHhCCeEeecCCCCCHH--------------
Q 013780           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVS--------------  116 (436)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~--------------  116 (436)
                      ..+|.+.+...+..+++.+...|+.++|++..++|-+.+  .+...++++..|+.+++.  .+++.              
T Consensus       109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~  186 (369)
T 3hgu_A          109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV  186 (369)
T ss_dssp             EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred             EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence            568999998888877777888899999999999886332  334455568889955543  33444              


Q ss_pred             ---------HHHHHHHhcCCcEEEEccchHHHHhh
Q 013780          117 ---------ELSKQVKDSNPKLVITVPELWDKVKD  142 (436)
Q Consensus       117 ---------~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (436)
                               .+...+++.++.+++..+..+..+.+
T Consensus       187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~  221 (369)
T 3hgu_A          187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK  221 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence                     66668899999999998877766543

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=86.70  E-value=8.3  Score=37.40  Aligned_cols=98  Identities=14%  Similarity=0.153  Sum_probs=73.4

Q ss_pred             CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEeec
Q 013780           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA  109 (436)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v~l  109 (436)
                      .|+.+|++..-+|       ..+|.+.+...+..+...   .++.++|++...+|-+..+-.   .+++++..|+..+..
T Consensus       180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  256 (539)
T 1mdb_A          180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS  256 (539)
T ss_dssp             CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence            4667777643222       578999887776665554   478899999988886654433   478889999999877


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEccchHHHHh
Q 013780          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVK  141 (436)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (436)
                      + ....+.+...+++.++.+++..+..+..+.
T Consensus       257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  287 (539)
T 1mdb_A          257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWM  287 (539)
T ss_dssp             S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHH
Confidence            5 467888999999999999999887766553

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=85.96  E-value=4.1  Score=39.75  Aligned_cols=99  Identities=18%  Similarity=0.186  Sum_probs=73.5

Q ss_pred             CceEEEeCCC-------CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHH--HHHHHHHHhCCeEeecCCC
Q 013780           42 SKLALIDADS-------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP--ICFLGVIAIGAIASTANPV  112 (436)
Q Consensus        42 ~~~a~~~~~~-------~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~--~~~lA~~~~G~~~v~l~~~  112 (436)
                      +.+|++..-+       +..+|.+.+...+......+...++.++|++...+|-...+-  ..+++++ .|+..+.++ .
T Consensus       192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~  269 (548)
T 2d1s_A          192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K  269 (548)
T ss_dssp             TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred             CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence            7777764422       357999988877666555443368889999988888654443  2356667 999998875 5


Q ss_pred             CCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780          113 YTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (436)
Q Consensus       113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (436)
                      .+.+.+...+++.++.+++..+..+..+..
T Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  299 (548)
T 2d1s_A          270 FDEETFLKTLQDYKCTSVILVPTLFAILNK  299 (548)
T ss_dssp             CCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence            688899999999999999999887776644

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=85.73  E-value=8.4  Score=37.42  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=73.5

Q ss_pred             CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHH---HHHHHHHhCCeEeec
Q 013780           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA  109 (436)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~---~~lA~~~~G~~~v~l  109 (436)
                      .++.+|++..-+|       ..+|.+.+...+..++..+   ++.++|++...+|....+-.   .+++++..|+..+..
T Consensus       189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  265 (544)
T 3o83_A          189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC---GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA  265 (544)
T ss_dssp             CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh---CCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence            4567777643223       5789999887777766544   78999999999887655543   378888899998877


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEccchHHHH
Q 013780          110 NPVYTVSELSKQVKDSNPKLVITVPELWDKV  140 (436)
Q Consensus       110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~  140 (436)
                      + ......+...+++.++.++...+..+..+
T Consensus       266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  295 (544)
T 3o83_A          266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMW  295 (544)
T ss_dssp             S-SCCHHHHHHHHHHHTCCEEEECHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHCCCEEEechHHHHHH
Confidence            5 45778888999999999999988766554

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=83.62  E-value=11  Score=36.31  Aligned_cols=98  Identities=9%  Similarity=0.091  Sum_probs=72.0

Q ss_pred             CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHH--HHHHHHhCCeEeecC
Q 013780           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC--FLGVIAIGAIASTAN  110 (436)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~--~lA~~~~G~~~v~l~  110 (436)
                      .|+.+|++..-+|       ..+|.+.+...+..++..+   ++.++|++...+|-...+-..  +++++ .|+..+..+
T Consensus       168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~  243 (517)
T 3r44_A          168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP  243 (517)
T ss_dssp             CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS
T ss_pred             CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC
Confidence            3566776533222       6799999888777766554   789999999988876544333  44455 899988774


Q ss_pred             CCCCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780          111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (436)
Q Consensus       111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (436)
                       ....+.+...+++.++.++...+..+..+..
T Consensus       244 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  274 (517)
T 3r44_A          244 -QFDATKVWSLIVEERVCIGGAVPAILNFMRQ  274 (517)
T ss_dssp             -SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence             5788899999999999999999877765543

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=82.96  E-value=7.6  Score=35.40  Aligned_cols=84  Identities=8%  Similarity=0.088  Sum_probs=61.0

Q ss_pred             ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEE
Q 013780           53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI  131 (436)
Q Consensus        53 ~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi  131 (436)
                      ..+|.+.+...+..++..   .+++++|++..++|-...+ +..++..+..|+..+..++....   ...+++.++.++.
T Consensus        55 V~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~  128 (358)
T 4gs5_A           55 ITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP---LAGLDHADFDFVA  128 (358)
T ss_dssp             EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEE
T ss_pred             EEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH---HHHHHHhCCeEEE
Confidence            679999988777666654   4789999999988865433 44556677888888877765432   3457788899999


Q ss_pred             EccchHHHHhh
Q 013780          132 TVPELWDKVKD  142 (436)
Q Consensus       132 ~~~~~~~~~~~  142 (436)
                      ..+..+..+..
T Consensus       129 ~~P~~l~~ll~  139 (358)
T 4gs5_A          129 MVPMQLQSILE  139 (358)
T ss_dssp             ECHHHHHHHHH
T ss_pred             cChHHHHHhhc
Confidence            88877666543

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=80.86  E-value=7  Score=37.61  Aligned_cols=99  Identities=12%  Similarity=0.103  Sum_probs=73.7

Q ss_pred             CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEeecCC
Q 013780           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP  111 (436)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~  111 (436)
                      .++.+|++..-+|       ..+|.+.+...+......   .++.++|++...+|-+..+ +..+++++..|+..+.+++
T Consensus       142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  218 (512)
T 3fce_A          142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVED---FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK  218 (512)
T ss_dssp             CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHH---TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred             CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHh---cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence            4566676533222       578998888776655544   4789999999999876433 4557888999999998865


Q ss_pred             C--CCHHHHHHHHHhcCCcEEEEccchHHHHh
Q 013780          112 V--YTVSELSKQVKDSNPKLVITVPELWDKVK  141 (436)
Q Consensus       112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~  141 (436)
                      .  ...+.+...+++.++.+++..+.....+.
T Consensus       219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~  250 (512)
T 3fce_A          219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCL  250 (512)
T ss_dssp             HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHT
T ss_pred             HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence            3  46778888999999999999988776654

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=80.58  E-value=8.2  Score=37.10  Aligned_cols=100  Identities=13%  Similarity=0.090  Sum_probs=73.5

Q ss_pred             CCCceEEEeCCCC-------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEeecCC
Q 013780           40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP  111 (436)
Q Consensus        40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~  111 (436)
                      .++.++++..-+|       ..+|.+.+...+..+...   .++.++|++....|-+..+ +..+++++..|+..+.++.
T Consensus       141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  217 (511)
T 3e7w_A          141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK  217 (511)
T ss_dssp             CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred             CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence            3566666533222       578998888777665554   4788999999998876443 4457888999999888765


Q ss_pred             C--CCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780          112 V--YTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (436)
Q Consensus       112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (436)
                      .  ...+.+...+++.++.+++..+..+..+..
T Consensus       218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  250 (511)
T 3e7w_A          218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLM  250 (511)
T ss_dssp             HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHT
T ss_pred             hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence            3  466788889999999999999887776543

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=80.45  E-value=9.2  Score=37.18  Aligned_cols=101  Identities=16%  Similarity=0.145  Sum_probs=73.2

Q ss_pred             CCceEEEeCCC-------CccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcH-HHHHHHHHHhCCeEeecCCC
Q 013780           41 SSKLALIDADS-------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPV  112 (436)
Q Consensus        41 p~~~a~~~~~~-------~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~-~~~~lA~~~~G~~~v~l~~~  112 (436)
                      ++.+|++..-+       +..+|.+.+..........+...++.+++++...+|-...+ +...++++..|+..+.++ .
T Consensus       189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~  267 (550)
T 3rix_A          189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-R  267 (550)
T ss_dssp             TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred             CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-C
Confidence            35566653322       26789888877665555444446788999999888865432 345677888999988875 5


Q ss_pred             CCHHHHHHHHHhcCCcEEEEccchHHHHhh
Q 013780          113 YTVSELSKQVKDSNPKLVITVPELWDKVKD  142 (436)
Q Consensus       113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~  142 (436)
                      ...+.+...+++.++.+++..+..+..+..
T Consensus       268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  297 (550)
T 3rix_A          268 FEEELFLRSLQDYKIQSALLVPTLFSFFAK  297 (550)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCeEEEeCcHHHHHHHh
Confidence            678889999999999999999887766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	436
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	4e-76
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-61
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-58
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-55
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-46
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	5e-41
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-38

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  247 bits (632), Expect = 4e-76
 Identities = 82/401 (20%), Positives = 151/401 (37%), Gaps = 26/401 (6%)

Query: 33  LFRNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           L R+      + A+I    D    + +S+ +    V + +++   LGI K DVV I+ P 
Sbjct: 78  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKV-----KDL 143
                +  L    IGA+ S     ++   ++  + DS+ +LVIT  E          K  
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 197

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL------SGSVTDIPDVSVKQTDAAAL 197
              A+   +   V    ++ R+   + + +  +L        +  +    ++   D   +
Sbjct: 198 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFI 257

Query: 198 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           LY+SG+TG  KGV+ T   ++  +     +       D +  C   +  V G S +LY  
Sbjct: 258 LYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGD-IYWCTADVGWVTGHSYLLYGP 316

Query: 258 LQKGNCVV----SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSL 311
           L  G   +               + ++K++V + +  P  I AL    +  +   D SSL
Sbjct: 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376

Query: 312 KLVGSGAAPLGKELMEDCQKNI--PGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGT 369
           +++GS   P+  E  E   K I      +    +  TET   +    P     ++GSA  
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGGFMITPLPGAIELKAGSATR 435

Query: 370 LVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
              GV+  +V  +   P      G + +             
Sbjct: 436 PFFGVQPALVD-NEGHPQEGATEGNLVITDSWPGQARTLFG 475

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  205 bits (521), Expect = 5e-61
 Identities = 100/399 (25%), Positives = 181/399 (45%), Gaps = 11/399 (2%)

Query: 17  PPLVLPSDPSFSMVHFLFRNSASYSS---KLALIDADSDESLSFSQFKSIVIKVSHSFRH 73
           P    P     +    L +    Y+     +A  DA  + +++++++  + ++++ + + 
Sbjct: 8   PAPFYP-LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR 66

Query: 74  LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133
            G+     +++ + NS+ F +  LG + IG   + AN +Y   EL   +  S P +V   
Sbjct: 67  YGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 126

Query: 134 PELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF--HDLIELSGSVTDIPDVSVKQ 191
            +   K+ ++     ++     + S         + +F    L         +P+   + 
Sbjct: 127 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 186

Query: 192 TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS 251
              A ++ SSG+TG+ KGV L H+                  +    +  +  FH     
Sbjct: 187 KTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 246

Query: 252 VILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311
                 L  G  VV M +F+ E+ LR+++ Y++    +VP +    AK++L+ K+D+S+L
Sbjct: 247 FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNL 306

Query: 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLV 371
             + SG APL KE+ E   K      I Q GYG+TET + I +     G  + G+ G +V
Sbjct: 307 HEIASGGAPLSKEVGEAVAKRFHLPGIRQ-GYGLTETTSAILITPE--GDDKPGAVGKVV 363

Query: 372 AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYIN 410
              EA++V +DT K L  NQ GE+ VRGP +  G  Y+N
Sbjct: 364 PFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG--YVN 400

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  200 bits (508), Expect = 2e-58
 Identities = 75/402 (18%), Positives = 152/402 (37%), Gaps = 25/402 (6%)

Query: 33  LFRNSASYSSKLALI----DADSDESLSFSQFKSIVIKVSHSFRH-LGITKKDVVLIFAP 87
           + R++    +K A+I    +     S+++ +    V +V+    + +G+ K D V ++ P
Sbjct: 65  VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 124

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA 147
                 I  L +  IGAI S     ++ + L  ++ D + K+VIT  E     K +    
Sbjct: 125 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKR 184

Query: 148 VLLGSKDKVSS----------SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAAL 197
           ++  +  +             +                E     T  P   V   D   L
Sbjct: 185 IVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFL 244

Query: 198 LYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQ 257
           LY+SG+TG  KGV  +   ++  +L+   +     + D V      +  + G + ++Y  
Sbjct: 245 LYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQED-VFFTAGDIGWITGHTYVVYGP 303

Query: 258 LQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAK--NSLVRKFDISSL 311
           L  G   +         +       I++++VT ++V P  +  L +  +S +    + SL
Sbjct: 304 LLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSL 363

Query: 312 KLVGSGAAPLGKELMEDCQKNIP--GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGT 369
           + +GS   P+  E+ E   + I      I    +        ++     V   + GSA  
Sbjct: 364 RCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASF 423

Query: 370 LVAGVEAQIVSVDTLKPLPPNQ-LGEIWVRGPNVTPGIVYIN 410
              G++A ++  +T + L  +   G + V+    +       
Sbjct: 424 PFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK 465

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  190 bits (483), Expect = 1e-55
 Identities = 85/401 (21%), Positives = 159/401 (39%), Gaps = 29/401 (7%)

Query: 21  LPS---DPSFSMVHFLFRNSASYSSKLALIDADSDE--SLSFSQFKSIVIKVSHSFRHLG 75
            PS   D   ++  FL R +A +  K  +    + E    ++++      ++    R LG
Sbjct: 2   FPSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG 61

Query: 76  ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPE 135
           +   D V     N       +  V  +GA+  TANP  +  E++  +  +  K+++  P 
Sbjct: 62  VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPN 121

Query: 136 LWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAA 195
           L   V+ +         + ++ +        +      L        +   V V +  A 
Sbjct: 122 LLPLVEAI---------RGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAAC 172

Query: 196 ALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILY 255
            + Y++GTTG+ KGV+ +H+  +  SL  S           VVL V+PMFHV    +   
Sbjct: 173 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 232

Query: 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVG 315
             L     V+   + D    +   +   VT    VP + LALA         + +L+ + 
Sbjct: 233 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLV 292

Query: 316 SGAAPLGKELMEDCQKNIPGATIFQVGYGMTETC---------APISLENPLVGVRRSGS 366
            G +   + L+   ++   G  + Q GYG+TET          + +   +    +     
Sbjct: 293 VGGSAAPRSLIARFER--MGVEVRQ-GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAK 349

Query: 367 AGTLVAGVEAQIVSVDTLKPLPPN--QLGEIWVRGPNVTPG 405
            G  +  V  ++   +  +P+P +   LGE+ ++GP +T G
Sbjct: 350 TGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGG 389

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  166 bits (420), Expect = 1e-46
 Identities = 87/406 (21%), Positives = 157/406 (38%), Gaps = 14/406 (3%)

Query: 28  SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP 87
           +    L   +A Y  ++A+   +     S+ +  +   +++  F+ LGI +KD V++  P
Sbjct: 26  TFGDLLRDRAAKYGDRIAITCGN--THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83

Query: 88  NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPA 147
           N   F      +  +GA+   A P +  SE++   + +     I      D     +  +
Sbjct: 84  NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYII----PDAYSGFDYRS 139

Query: 148 VLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVS 207
           +    + K+ +   I  + +   F  L +L      +P+V    +D A L  S G+TG+S
Sbjct: 140 LARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVK--SSDVAFLQLSGGSTGLS 197

Query: 208 KGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ-KGNCVVS 266
           K +  TH ++I +         L      V L  LPM H + LS      +   G  VV 
Sbjct: 198 KLIPRTHDDYIYSLKRSVEVCWLDH--STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255

Query: 267 MGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
                 + A   IE+ +VT+  +VPP+ +     +  R+ D+SSL+++  G A    E  
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315

Query: 327 EDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP 386
              +    G T+ QV            L++P        + G  ++  +   V  D  + 
Sbjct: 316 RRVKAV-FGCTLQQVFGMAEGLVNYTRLDDP--EEIIVNTQGKPMSPYDESRVWDDHDRD 372

Query: 387 LPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKD 432
           + P + G +  RGP    G           F     +    I    
Sbjct: 373 VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  150 bits (380), Expect = 5e-41
 Identities = 65/385 (16%), Positives = 129/385 (33%), Gaps = 39/385 (10%)

Query: 25  PSFSMVHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83
           P    +H LF    S   + +A++  +  E L++ +      +++  F   GI K  +V 
Sbjct: 20  PRDKTIHQLFEEQVSKRPNNVAIVCEN--EQLTYHELNVKANQLARIFIEKGIGKDTLVG 77

Query: 84  IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143
           I    SI   I  L V+  G      +  Y    +   + DS  ++++T   L   + ++
Sbjct: 78  IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI 137

Query: 144 NLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGT 203
                                    V   +   +         V  K TD A ++Y+SGT
Sbjct: 138 QFNGQ--------------------VEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGT 177

Query: 204 TGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263
           TG  KG +L HK      +               +     +     +  +    L   + 
Sbjct: 178 TGNPKGTMLEHKGISNLKVFFENSLN--VTEKDRIGQFASISFDASVWEMFMALLTGASL 235

Query: 264 VVSMGK--FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPL 321
            + +     D     + I +  +TV  + P  +        +    I S++ + +  +  
Sbjct: 236 YIILKDTINDFVKFEQYINQKEITVITLPPTYV------VHLDPERILSIQTLITAGSAT 289

Query: 322 GKELMEDCQKNIPGATIFQVGYGMTETCAPIS-LENPLVGVRRSGSAGTLVAGVEAQIVS 380
              L+   ++ +     +   YG TET    +        +  S   G  +   +  IV 
Sbjct: 290 SPSLVNKWKEKVT----YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD 345

Query: 381 VDTLKPLPPNQLGEIWVRGPNVTPG 405
            + L+     + GE+ + G  +  G
Sbjct: 346 -ENLQLKSVGEAGELCIGGEGLARG 369

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  142 bits (358), Expect = 3e-38
 Identities = 78/384 (20%), Positives = 146/384 (38%), Gaps = 22/384 (5%)

Query: 30  VHFLFRNSAS-YSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88
           V+ + R +A+      AL        L+ ++ ++ V  V+      G+  +  V + APN
Sbjct: 4   VNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPN 63

Query: 89  SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAV 148
           S    I  L +  +GA+ +  NP    +EL++ +K       +         + +     
Sbjct: 64  SADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-----RQVADAIF 118

Query: 149 LLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSK 208
             GS  ++   G + R  +  S+   IE         D   +    A + Y+SGTTG+ K
Sbjct: 119 QSGSGARIIFLGDLVRDGEPYSYGPPIE---------DPQREPAQPAFIFYTSGTTGLPK 169

Query: 209 GVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMG 268
             I+  +   +  L +S    L     +VVL ++P++HV G   +L   L      V + 
Sbjct: 170 AAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE 229

Query: 269 KFDIEMALRAIEKYRVTVW--WVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELM 326
           +F    AL+ +++ +VT           LA A         + SL+ V    A +   ++
Sbjct: 230 EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVL 289

Query: 327 EDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKP 386
           E   +++P        YG TE    + +  P  G   +    + V  V    +     + 
Sbjct: 290 ETVHQHLP--GEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIV---RIGGGVDEI 344

Query: 387 LPPNQLGEIWVRGPNVTPGIVYIN 410
           +   + GE+ V   +         
Sbjct: 345 VANGEEGELIVAASDSAFVGYLNQ 368

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	436
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	80.25

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=3.7e-58  Score=464.19  Aligned_cols=404  Identities=20%  Similarity=0.227  Sum_probs=319.0

Q ss_pred             CcCCCCCCCchHHHHh-hhcccCCCceEEEeCC----CCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHH
Q 013780           19 LVLPSDPSFSMVHFLF-RNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP   93 (436)
Q Consensus        19 ~~~~~~~~~ti~~~l~-~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~   93 (436)
                      .|+++ +..|+.+.+. ++++++||++|+++..    ..+++||+||.+++.++|+.|+++|+++||+|+++++|+++++
T Consensus        64 ~wf~~-~~~N~~~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~i  142 (643)
T d1pg4a_          64 KWYED-GTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA  142 (643)
T ss_dssp             EESTT-CEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH
T ss_pred             eeCCC-ChhhHHHHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHH
Confidence            35554 3488887654 7778899999998542    1268999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHH-------------HHhhc---CCCcEEeccCCccc
Q 013780           94 ICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD-------------KVKDL---NLPAVLLGSKDKVS  157 (436)
Q Consensus        94 ~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~  157 (436)
                      +++|||+++|++++|+++.++.+++.+++++++++++|+++....             .+...   ....++........
T Consensus       143 v~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~  222 (643)
T d1pg4a_         143 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD  222 (643)
T ss_dssp             HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCC
T ss_pred             HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcc
Confidence            999999999999999999999999999999999999999864321             11111   12222222111000


Q ss_pred             cccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhH-HhhhhccCCCCc
Q 013780          158 SSGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI-SAHQELVGELDH  236 (436)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~~  236 (436)
                       .  ...........+......  ....+....++++++|+|||||||.||+|+++|++++.+.... .....+.  .+|
T Consensus       223 -~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~--~~d  295 (643)
T d1pg4a_         223 -I--DWQEGRDLWWRDLIEKAS--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH--PGD  295 (643)
T ss_dssp             -C--CCCBTTEEEHHHHHTTSC--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCC--TTC
T ss_pred             -c--ccccccchhhhhhhcccC--cccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCC--CCC
Confidence             0  001111122333333332  3444556678999999999999999999999999977654332 2233332  339


Q ss_pred             EEEechhHHHHHHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCc
Q 013780          237 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISS  310 (436)
Q Consensus       237 ~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~  310 (436)
                      ++++.+|++|++++...++.+|..|+++++.+.    +++..+++.++++++|+++++|+++..|.+....  ...++++
T Consensus       296 ~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~s  375 (643)
T d1pg4a_         296 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSS  375 (643)
T ss_dssp             EEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTT
T ss_pred             EEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCc
Confidence            999999999999997678899999999998743    4889999999999999999999999999887543  4567899


Q ss_pred             ceEEEecCCCCcHHHHHHHHhhCC--CCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCC
Q 013780          311 LKLVGSGAAPLGKELMEDCQKNIP--GATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLP  388 (436)
Q Consensus       311 lr~i~~gg~~l~~~~~~~~~~~~~--~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~  388 (436)
                      ||.+++||+++++++++++.+.++  ++++++ .||+||++++++...+.....+.+++|+|++|++++|+|+ +|++++
T Consensus       376 Lr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~-~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~-~g~~~~  453 (643)
T d1pg4a_         376 LRILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQE  453 (643)
T ss_dssp             CCEEEEESSCCCHHHHHHHHHHTTTTCSCEEE-EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCBCC
T ss_pred             eEEEEEEeCCCCHHHHHHHHHHhCCCCceEEE-eechhhccceEEecCCCccCCCCCccccccCCCEEEEECC-CCCCCC
Confidence            999999999999999999999986  577999 9999999987776655444678899999999999999995 899999


Q ss_pred             CCCceEEEEecC--CcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          389 PNQLGEIWVRGP--NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       389 ~g~~Gel~v~g~--~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .|+.|||+|+|+  +++.|  ||++++.+.+.+- -..+|||+|||+|+
T Consensus       454 ~g~~Gel~v~~~~p~~~~~--~~~~~~~~~~~~~-~~~~g~~~TGDl~~  499 (643)
T d1pg4a_         454 GATEGNLVITDSWPGQART--LFGDHERFEQTYF-STFKNMYFSGDGAR  499 (643)
T ss_dssp             SSEEEEEEECSCCTTCCCE--ETTCHHHHHHHHH-SSSTTSEEEEEEEE
T ss_pred             CCceEEEEEecCCCccccc--ccCChhhchhhhc-ccCCCeEEcCCEEE
Confidence            999999999994  68899  9999998877651 12367999999873

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=6.4e-57  Score=448.66  Aligned_cols=405  Identities=26%  Similarity=0.398  Sum_probs=327.7

Q ss_pred             eeecCCCCCcCCCCCCCchHHHHhhhcccC---CCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 013780           11 IYRSLRPPLVLPSDPSFSMVHFLFRNSASY---SSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAP   87 (436)
Q Consensus        11 ~~~~~~~~~~~~~~~~~ti~~~l~~~~~~~---p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~   87 (436)
                      |.++|.|...++   +.|+.+.|.+.++++   |+++|+++.+.++++||+||.+++.++|+.|.++||++||+|+|+++
T Consensus         4 ~~~~p~p~~p~~---~~t~~~~l~~~~~~~~~~P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~   80 (541)
T d1lcia_           4 IKKGPAPFYPLE---DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE   80 (541)
T ss_dssp             SEECCCCSSCCC---SSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred             CCcCCCCCCCCC---CCCHHHHHHHHHHhhCCCCCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeC
Confidence            455655543333   368999999888777   88889998877789999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhc----C-CCcEEeccCCcccccccc
Q 013780           88 NSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDL----N-LPAVLLGSKDKVSSSGLI  162 (436)
Q Consensus        88 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~  162 (436)
                      |++++++++|||+++|++++|+++.++.+++.++++.++++++|++++..+.+.+.    . .+.+++....        
T Consensus        81 ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  152 (541)
T d1lcia_          81 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK--------  152 (541)
T ss_dssp             SCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS--------
T ss_pred             CCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCC--------
Confidence            99999999999999999999999999999999999999999999999877665443    2 2222222211        


Q ss_pred             ccCcccchhhHHhhhcCC-----CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccC-CCCc
Q 013780          163 SRSSKIVSFHDLIELSGS-----VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDH  236 (436)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~~  236 (436)
                      .....+..+.+.......     ....+.....++++++|+|||||||.||+|+++|++++.............. ...+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~  232 (541)
T d1lcia_         153 TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT  232 (541)
T ss_dssp             SCBTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTC
T ss_pred             ccccccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccc
Confidence            122233333333332211     1122234456788999999999999999999999999876555443333322 2339


Q ss_pred             EEEechhHHHHHHHHHHHHhhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEe
Q 013780          237 VVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGS  316 (436)
Q Consensus       237 ~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~  316 (436)
                      ++++.+|++|..++. ..+..+..++.+......+.......+.++++|.+..+|.++..+.+.......++++||.+++
T Consensus       233 ~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~  311 (541)
T d1lcia_         233 AILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS  311 (541)
T ss_dssp             EEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEEC
T ss_pred             ccccccccccccccc-ccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEe
Confidence            999999999999986 6777778888888888889999999999999999999999999999988888888999999999


Q ss_pred             cCCCCcHHHHHHHHhhCCCCeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEE
Q 013780          317 GAAPLGKELMEDCQKNIPGATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIW  396 (436)
Q Consensus       317 gg~~l~~~~~~~~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~  396 (436)
                      ||++++++..+++.+.++...+++ .||+||+++.++.....  ..+++++|+|+|+++++|+|+|++++++.|+.|||+
T Consensus       312 gG~~~~~~~~~~~~~~~~~~~~~~-~YG~TE~~~~~~~~~~~--~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~  388 (541)
T d1lcia_         312 GGAPLSKEVGEAVAKRFHLPGIRQ-GYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELC  388 (541)
T ss_dssp             TTCCCCHHHHHHHHHHTTCSCCBC-EECCGGGSSCSEECCCC-----CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEE
T ss_pred             cccccccccccccccccCCceeee-cCCccccCceEEecCcc--cCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEE
Confidence            999999999999999998677889 99999999988877665  678899999999999999999899999999999999


Q ss_pred             EecCCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          397 VRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       397 v~g~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      |+|++++.|  |+++++.+...+   ..++||+|||+|.
T Consensus       389 v~g~~~~~g--Y~~~~~~~~~~~---~~~~~~~TGDl~~  422 (541)
T d1lcia_         389 VRGPMIMSG--YVNNPEATNALI---DKDGWLHSGDIAY  422 (541)
T ss_dssp             EESTTSCSE--ETTBHHHHHHHB---CTTSCEEEEEEEE
T ss_pred             EccCccCCe--eCCChhhhhhcc---cCCccccCCCeeE
Confidence            999999999  999999888776   3578999999863

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.6e-56  Score=442.58  Aligned_cols=387  Identities=23%  Similarity=0.326  Sum_probs=317.0

Q ss_pred             CCchHHHHhhhcccCCCceEEEeCCCC--ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhC
Q 013780           26 SFSMVHFLFRNSASYSSKLALIDADSD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG  103 (436)
Q Consensus        26 ~~ti~~~l~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G  103 (436)
                      ++||.++|.++++++|+++|+++.+++  +++||+||.+++.++|+.|.++|+++||+|+|+++|++++++++|||+++|
T Consensus        10 ~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G   89 (534)
T d1v25a_          10 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG   89 (534)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence            389999999999999999999988665  469999999999999999999999999999999999999999999999999


Q ss_pred             CeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcC-----CCcEEeccCCccccccccccCcccchhhHHhhhc
Q 013780          104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS  178 (436)
Q Consensus       104 ~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (436)
                      ++++|++|.++.+++.++++.+++++++++...........     .+..+.....         .........   ...
T Consensus        90 ~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~---~~~  157 (534)
T d1v25a_          90 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEK---------APEGYLAYE---EAL  157 (534)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSC---------CCTTCEEHH---HHC
T ss_pred             cEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecc---------ccccccccc---ccc
Confidence            99999999999999999999999999999987776655442     2222222110         111111111   111


Q ss_pred             CCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhc
Q 013780          179 GSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQL  258 (436)
Q Consensus       179 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l  258 (436)
                      .  .........++++++++|||||||.||+|+++|.++..++..............+++++.+|++|..++...++..+
T Consensus       158 ~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~  235 (534)
T d1v25a_         158 G--EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATL  235 (534)
T ss_dssp             C--SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHH
T ss_pred             c--ccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeee
Confidence            1  22334556788999999999999999999999999987655444443333334489999999999999975555555


Q ss_pred             cCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCee
Q 013780          259 QKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (436)
Q Consensus       259 ~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i  338 (436)
                      ..|.++.+.+.+++..+...+.++++|++.++|.++..++........++++||.+++||++++++..+++++.  +.++
T Consensus       236 ~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i  313 (534)
T d1v25a_         236 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEV  313 (534)
T ss_dssp             HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEE
T ss_pred             ecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh--CCee
Confidence            55555555577899999999999999999999999999998877777789999999999999999999999866  4899


Q ss_pred             eeccccccccCCcccccCCCCC---------ccCcCccccccCCcEEEEEeCCCCccCCC--CCceEEEEecCCcccCcc
Q 013780          339 FQVGYGMTETCAPISLENPLVG---------VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPGIV  407 (436)
Q Consensus       339 ~~~~YG~tE~~~~~~~~~~~~~---------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~--g~~Gel~v~g~~~~~g~~  407 (436)
                      ++ .||+||++.++........         ..+.+++|+|+||++++|+|+ +++.++.  |+.|||+++|++++.|  
T Consensus       314 ~~-~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~-~~~~~~~~~~~~Gel~v~g~~v~~g--  389 (534)
T d1v25a_         314 RQ-GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADE-EGRPVPKDGKALGEVQLKGPWITGG--  389 (534)
T ss_dssp             EE-EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECT-TSCBCCSSSCCCEEEEEESTTSBSS--
T ss_pred             ee-eccccccccceeecccCccccccCccccccccccceeccCCcEEEEECC-CCCCCCCCCCeeEEEEEcCCcccce--
Confidence            99 9999999988776543321         124578999999999999995 7887775  6789999999999999  


Q ss_pred             ccCChhhhhhhccccccCCeeecCCCCC
Q 013780          408 YINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       408 Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      ||++++.+...+.   .+|||+|||+|+
T Consensus       390 Y~~~~~~t~~~~~---~dg~~~TGDlg~  414 (534)
T d1v25a_         390 YYGNEEATRSALT---PDGFFRTGDIAV  414 (534)
T ss_dssp             CBTCHHHHHTTBC---TTSCEEEEEEEE
T ss_pred             ecCChhhhhhhcc---cCCCCccCceeE
Confidence            9999999998873   678999999873

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-54  Score=437.27  Aligned_cols=407  Identities=20%  Similarity=0.239  Sum_probs=312.2

Q ss_pred             CcCCCCCCCchHH-HHhhhcccCCCceEEEeCC----CCccccHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCCcH
Q 013780           19 LVLPSDPSFSMVH-FLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHF   92 (436)
Q Consensus        19 ~~~~~~~~~ti~~-~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~gv~~gd~V~l~~~n~~~~   92 (436)
                      .|+++. ..|+.+ .|.++++++|+++|+++..    .++++||+||.++++++|+.|+ ++|+++||+|+|+++|++++
T Consensus        51 ~wf~~~-~lN~~~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~  129 (640)
T d1ry2a_          51 AWFLNG-QLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA  129 (640)
T ss_dssp             CBSTTC-EECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH
T ss_pred             cCCCCC-chhHHHHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHH
Confidence            455543 367755 4567889999999998542    2378999999999999999997 68999999999999999999


Q ss_pred             HHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHH---------HHhhcC-----CCcEEeccCCcccc
Q 013780           93 PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDLN-----LPAVLLGSKDKVSS  158 (436)
Q Consensus        93 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~  158 (436)
                      ++++|||+++|++++|+++.++.+++.++++++++++++++.....         .+....     ..............
T Consensus       130 ~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (640)
T d1ry2a_         130 IITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS  209 (640)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS
T ss_pred             HHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccc
Confidence            9999999999999999999999999999999999999999864321         111111     11111111100000


Q ss_pred             ccccccCcccchhhHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEE
Q 013780          159 SGLISRSSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVV  238 (436)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~  238 (436)
                      .  ..................  .........++++++|+|||||||.||||+++|.+++.+........ .....+|++
T Consensus       210 ~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~-~~~~~~d~~  284 (640)
T d1ry2a_         210 V--AFHAPRDLDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT-FDTHQEDVF  284 (640)
T ss_dssp             C--CCCSSSEEEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH-SCCCSSCEE
T ss_pred             c--cccccccccccccccccc--cccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh-cCCCcccce
Confidence            0  000111111222222221  33344556788999999999999999999999999887654433222 122334999


Q ss_pred             EechhHHHHHHHHHHHHhhccCCcEEEEcCC----CCHHHHHHHHHHhcceEEEecHHHHHHHHhcccc--CccCCCcce
Q 013780          239 LCVLPMFHVFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLV--RKFDISSLK  312 (436)
Q Consensus       239 ~~~~p~~~~~g~~~~~~~~l~~G~~v~~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~lr  312 (436)
                      ++.+|++|++|+...++.+|..|+++++.+.    +++..+++.++++++|+++++|+++..|.+....  ...++++||
T Consensus       285 l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr  364 (640)
T d1ry2a_         285 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLR  364 (640)
T ss_dssp             EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCC
T ss_pred             eeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceE
Confidence            9999999999987778889999999888753    3789999999999999999999999999876543  456799999


Q ss_pred             EEEecCCCCcHHHHHHHHhhCC--CCeeeeccccccccCCcccccCCCC-CccCcCccccccCCcEEEEEeCCCCccCC-
Q 013780          313 LVGSGAAPLGKELMEDCQKNIP--GATIFQVGYGMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLP-  388 (436)
Q Consensus       313 ~i~~gg~~l~~~~~~~~~~~~~--~~~i~~~~YG~tE~~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~-  388 (436)
                      .+++||+++++++.+++++.++  ...+++ .||+||++.......... ...+++++|+|+++++++|+|++++..++ 
T Consensus       365 ~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~-~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~  443 (640)
T d1ry2a_         365 CLGSVGEPIAAEVWEWYSEKIGKNEIPIVD-TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNT  443 (640)
T ss_dssp             EEEECSSCCCHHHHHHHHHTTSCSSSCEEE-CBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEEC
T ss_pred             EEEEecccCcHHHHHHHHHhcCCCcceEEe-eecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCC
Confidence            9999999999999999999997  356889 999999988766544332 25678999999999999999987766554 


Q ss_pred             CCCceEEEEec--CCcccCccccCChhhhhhhccccccCCeeecCCCCC
Q 013780          389 PNQLGEIWVRG--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       389 ~g~~Gel~v~g--~~~~~g~~Y~~~~~~~~~~~~~~~~~~~~~tgD~~~  435 (436)
                      .+..|||+++|  |+++.|  ||++++.+.+.+- .+.+|||+|||+|+
T Consensus       444 ~~~~Gel~i~~~~p~~~~g--y~~~~e~t~~~~~-~~~~gw~~TGDlg~  489 (640)
T d1ry2a_         444 SHAEGVLAVKAAWPSFART--IWKNHDRYLDTYL-NPYPGYYFTGDGAA  489 (640)
T ss_dssp             SSCEEEEEESSCCTTSCCE--ETTCHHHHHHHHT-SSSTTSEEEEEEEE
T ss_pred             CCceEEEEEEecCCCcccc--cccCHHHHHhhhc-cCCCCeEEcCCcee
Confidence            45679999999  589999  9999999988761 23457999999863

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.9e-52  Score=412.36  Aligned_cols=384  Identities=18%  Similarity=0.218  Sum_probs=315.1

Q ss_pred             eecCCCCCcCCCCCCCchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCc
Q 013780           12 YRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH   91 (436)
Q Consensus        12 ~~~~~~~~~~~~~~~~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~   91 (436)
                      |........+|..  .||.++|+++++++||++|+++.  ++++||+||.++++++|+.|+++|+++||+|+|+++|+++
T Consensus        10 ~~~~~~~~~~~~~--~tl~~l~~~~a~~~Pd~~Al~~~--~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~   85 (514)
T d1amua_          10 FAVNNTKAEYPRD--KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID   85 (514)
T ss_dssp             HHTTCCCCCCCTT--CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH
T ss_pred             HHhcCCCCCCCCC--CcHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHH
Confidence            3445555667766  99999999999999999999997  7999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCeEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHhhcCCCcEEeccCCccccccccccCcccchh
Q 013780           92 FPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSF  171 (436)
Q Consensus        92 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (436)
                      |++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+...............                
T Consensus        86 ~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~----------------  149 (514)
T d1amua_          86 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEED----------------  149 (514)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCS----------------
T ss_pred             HHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccccccccccc----------------
Confidence            9999999999999999999999999999999999999999999888877666533332221100                


Q ss_pred             hHHhhhcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHH
Q 013780          172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLS  251 (436)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~  251 (436)
                         ... ............++++++|+|||||||.||+|++||.++..++............  +++++..|++|..++.
T Consensus       150 ---~~~-~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~~~~  223 (514)
T d1amua_         150 ---TIK-IREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEK--DRIGQFASISFDASVW  223 (514)
T ss_dssp             ---TTT-TSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTT--CEEEECSCTTSTHHHH
T ss_pred             ---ccc-ccccccCCCCCCcccceEEEEccCCCCCccccccccccccccccccccccccccc--ccccceeccccccccc
Confidence               000 0002222334567889999999999999999999999999998877666655444  9999999999999986


Q ss_pred             HHHHhhccCCcEEEEcCC---CCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHH
Q 013780          252 VILYDQLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMED  328 (436)
Q Consensus       252 ~~~~~~l~~G~~v~~~~~---~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~  328 (436)
                       .++.++..|+++++...   .+....++.+..+.++.+..+|..+..      ....+++++|.+++||+++++++.++
T Consensus       224 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~~~~~~  296 (514)
T d1amua_         224 -EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDPERILSIQTLITAGSATSPSLVNK  296 (514)
T ss_dssp             -HHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCHHHHHH
T ss_pred             -cccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccc------ccccccccccEEEEecccCCHHHhhh
Confidence             67778888888888753   467888999999999999999976543      23456889999999999999999988


Q ss_pred             HHhhCCCCeeeeccccccccCCcccccCCCCC-ccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCcc
Q 013780          329 CQKNIPGATIFQVGYGMTETCAPISLENPLVG-VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIV  407 (436)
Q Consensus       329 ~~~~~~~~~i~~~~YG~tE~~~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~  407 (436)
                      +.+   +..+++ .||+||++.+++....... .....+.|.+.++.++.+.| +++++++.|+.|||+|+|++++.|  
T Consensus       297 ~~~---~~~~~~-~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~g--  369 (514)
T d1amua_         297 WKE---KVTYIN-AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARG--  369 (514)
T ss_dssp             HTT---TSEEEE-EECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCE--
T ss_pred             hcc---ceeEEE-eeccccCceeeeeccccccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCccccc--
Confidence            776   478999 9999999988776544422 33456788999999999999 699999999999999999999999  


Q ss_pred             ccCChhhhhhhc--cc-cccCCeeecCCCCC
Q 013780          408 YINFFVFTLFLW--GC-EHTDSFIRGKDQQT  435 (436)
Q Consensus       408 Y~~~~~~~~~~~--~~-~~~~~~~~tgD~~~  435 (436)
                      ||++++.+...|  ++ .+.++||+|||+|+
T Consensus       370 Y~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~  400 (514)
T d1amua_         370 YWKRPELTSQKFVDNPFVPGEKLYKTGDQAR  400 (514)
T ss_dssp             ETTCHHHHHHHEEECSSSTTSEEEEEEEEEE
T ss_pred             ccccccccceeeEeccccCCCceEEECCEEE
Confidence            999999999988  33 34478999999874

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=6.7e-51  Score=404.50  Aligned_cols=380  Identities=23%  Similarity=0.284  Sum_probs=312.5

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .||.++|.++++++||++|+++.  ++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|+++
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~G~i~  102 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP  102 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC--CEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            58999999999999999999997  6899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHHHH---------hhcC-CCcEEeccCCccccccccccCcccchhhHHhh
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKV---------KDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE  176 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (436)
                      +|++|.++.+++.++++.++++++++++......         .... ....+..           ........++++..
T Consensus       103 vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~  171 (536)
T d1mdba_         103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVA-----------GEAEEFLPLEDLHT  171 (536)
T ss_dssp             EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEE-----------SCCTTSEEGGGCCC
T ss_pred             EecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeee-----------eccccccchhhccc
Confidence            9999999999999999999999999986432110         0000 1111111           11112222222211


Q ss_pred             hcCCCCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHH-HH
Q 013780          177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVI-LY  255 (436)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~-~~  255 (436)
                           .........++++++|+|||||||.||+|++||+++..++........+...  +++++..|++|.+++... +.
T Consensus       172 -----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~--d~~l~~~~~~~~~~l~~~~~~  244 (536)
T d1mdba_         172 -----EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHS--TVYLAALPMAHNYPLSSPGVL  244 (536)
T ss_dssp             -----CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTT--CEEEECSCTTSHHHHHSSHHH
T ss_pred             -----CCcCCCccCccchHHhhhcccccccceecccccccccccccccccccccccc--cccccccccccccceeecccc
Confidence                 2223345678899999999999999999999999999998887776665444  999999999999987544 44


Q ss_pred             hhccCCcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccccCccCCCcceEEEecCCCCcHHHHHHHHhhCCC
Q 013780          256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG  335 (436)
Q Consensus       256 ~~l~~G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~  335 (436)
                      ..+..|.+++..+.+++..++..+++++++.+..+|..+..+..........++++|.+++||+++++.+.+++.+.++ 
T Consensus       245 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~-  323 (536)
T d1mdba_         245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-  323 (536)
T ss_dssp             HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-
T ss_pred             ccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccC-
Confidence            4445577888778899999999999999999999999999998888777788999999999999999999999999998 


Q ss_pred             CeeeeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEecCCcccCccccCChhhh
Q 013780          336 ATIFQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFT  415 (436)
Q Consensus       336 ~~i~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~g~~Y~~~~~~~  415 (436)
                      ..... .|+.+|.+..+...... .....+++|.|+++....+++.++|++++.++.|||+++|+.++.|  |+++++.+
T Consensus       324 ~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~g--Y~~~~~~~  399 (536)
T d1mdba_         324 CTLQQ-VFGMAEGLVNYTRLDDP-EEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRG--YYKAEEHN  399 (536)
T ss_dssp             SEEEE-EEECTTSCEEECCTTSC-HHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSS--CTTCHHHH
T ss_pred             ceeee-ccccccccccccccccc-cccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccc--cccccccc
Confidence            88888 78888876555544332 2556789999997665555555799999999999999999999999  99999988


Q ss_pred             hhhccccccCCeeecCCCC
Q 013780          416 LFLWGCEHTDSFIRGKDQQ  434 (436)
Q Consensus       416 ~~~~~~~~~~~~~~tgD~~  434 (436)
                      ...+.   .++|++|||++
T Consensus       400 ~~~~~---~~~~~~tGD~~  415 (536)
T d1mdba_         400 AASFT---EDGFYRTGDIV  415 (536)
T ss_dssp             HHHBC---TTSCEEEEEEE
T ss_pred             ccccc---ccCccccCccc
Confidence            88773   57899999876

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=5.6e-47  Score=372.64  Aligned_cols=378  Identities=21%  Similarity=0.279  Sum_probs=308.8

Q ss_pred             CchHHHHhhhcccCCCceEEEeCCCCccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCcHHHHHHHHHHhCCeE
Q 013780           27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA  106 (436)
Q Consensus        27 ~ti~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~  106 (436)
                      .||.++|.++++++|+++|+++.++++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus         2 ~ti~~~l~~~a~~~pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~   81 (503)
T d3cw9a1           2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP   81 (503)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhCCCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCcEE
Confidence            47999999999999999999998777899999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCHHHHHHHHHhcCCcEEEEccchHH--HHhhcC-CCcEEeccCCccccccccccCcccchhhHHhhhc---CC
Q 013780          107 STANPVYTVSELSKQVKDSNPKLVITVPELWD--KVKDLN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS---GS  180 (436)
Q Consensus       107 v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  180 (436)
                      +|++|.++.+++.+++++++++++|++.....  .+.... ...++..                    .++....   ..
T Consensus        82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~--------------------~~~~~~~~~~~~  141 (503)
T d3cw9a1          82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFL--------------------GDLVRDGEPYSY  141 (503)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEH--------------------HHHEETTEECCC
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccc--------------------hhhhhhhccccc
Confidence            99999999999999999999999999875422  122222 2222221                    1111111   01


Q ss_pred             CCCCCCCCCCCCCeEEEEcCCCCCCCCcceehhhhHHHhhhhhHHhhhhccCCCCcEEEechhHHHHHHHHHHHHhhccC
Q 013780          181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK  260 (436)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~  260 (436)
                      ..........++++++++|||||||.||+|.++|.++..................+.++..+|+.|..+.....+.+...
T Consensus       142 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  221 (503)
T d3cw9a1         142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALAL  221 (503)
T ss_dssp             SCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHT
T ss_pred             CCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCcccccccccccccccccc
Confidence            12233445678899999999999999999999999999988776655555444458999999998888887778888899


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEEecHHHHHHHHhccc--cCccCCCcceEEEecCCCCcHHHHHHHHhhCCCCee
Q 013780          261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI  338 (436)
Q Consensus       261 G~~v~~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~i  338 (436)
                      ++++++.+++++..+...+.+++++++..+|..+..+.....  .....+++||.+++||+++++++...+++.++ ..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~-~~~  300 (503)
T d3cw9a1         222 DGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEK  300 (503)
T ss_dssp             TCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCC-SEE
T ss_pred             ccccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEecccccccccccccccccc-ccc
Confidence            999999999999999999999999999999999887765433  24456789999999999999999999999997 889


Q ss_pred             eeccccccccCCcccccCCCCCccCcCccccccCCcEEEEEeCCCCccCCCCCceEEEEec-CCcccCccccCChhhhhh
Q 013780          339 FQVGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG-PNVTPGIVYINFFVFTLF  417 (436)
Q Consensus       339 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g-~~~~~g~~Y~~~~~~~~~  417 (436)
                      .+ .||.+|++..+......  .....+.+.+.+...+.+.+ +.++.++.|+.|++.+.+ .....+  |+++++.+.+
T Consensus       301 ~~-~yg~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~~~~t~~  374 (503)
T d3cw9a1         301 VN-IYGTTEAMNSLYMRQPK--TGTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVG--YLNQPQATAE  374 (503)
T ss_dssp             EE-EEEETTTEEEEEEESCS--SSSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCC--BTTCHHHHHH
T ss_pred             cc-cccccccceeeeecccc--ccccccccccccceeeeeec-ccCcccCCCcccccccccccccccc--ccCChhhhHH
Confidence            99 99999998877765544  34444455555555555555 688999999999887765 567778  8999999999


Q ss_pred             hccccccCCeeecCCCCC
Q 013780          418 LWGCEHTDSFIRGKDQQT  435 (436)
Q Consensus       418 ~~~~~~~~~~~~tgD~~~  435 (436)
                      .|    .+|||+|||+|+
T Consensus       375 ~~----~~g~~~TgD~g~  388 (503)
T d3cw9a1         375 KL----QDGWYRTSDVAV  388 (503)
T ss_dssp             HE----ETTEEEEEEEEE
T ss_pred             Hh----cCCceecccccc
Confidence            88    578999999874

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=80.25  E-value=1.1  Score=41.06  Aligned_cols=103  Identities=12%  Similarity=0.082  Sum_probs=74.9

Q ss_pred             eehhhhHHHhhhhhHHhhhhccCCC-CcEEEechhHHHHHHHHHHHHhhccCCcEEEEc-CCCCHHHHHHHHHHhcceEE
Q 013780          210 VILTHKNFIAASLMISAHQELVGEL-DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVW  287 (436)
Q Consensus       210 v~~t~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~g~~~~~~~~l~~G~~v~~~-~~~~~~~~~~~l~~~~~t~l  287 (436)
                      ..+|++.+...+..++..+.-.+.+ +|++...++-..  .+...+++++..|+..+.. +.++...+...++..+++++
T Consensus        46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~--e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~v  123 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL--QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV  123 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCS--STHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred             eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCH--HHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEE
Confidence            4589999999988888777654433 377776665442  3334778889999988877 56788999999999999999


Q ss_pred             EecHHHHHHHHhccccCccCCCcceEEEecC
Q 013780          288 WVVPPIILALAKNSLVRKFDISSLKLVGSGA  318 (436)
Q Consensus       288 ~~~p~~~~~l~~~~~~~~~~l~~lr~i~~gg  318 (436)
                      ++....+..+.+...    .++.++.+....
T Consensus       124 i~~~~~~~~~~~~~~----~~~~~~~~~~~~  150 (541)
T d1lcia_         124 FVSKKGLQKILNVQK----KLPIIQKIIIMD  150 (541)
T ss_dssp             EECGGGHHHHHHHHH----HCTTCCEEEETT
T ss_pred             eeeccccccchhccc----cccccceeeeec
Confidence            999988777665432    234555555543